BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043060
         (707 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score = 1168 bits (3021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/730 (76%), Positives = 619/730 (84%), Gaps = 29/730 (3%)

Query: 7   SLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALS 66
           SL + P  LHF P+SDPPYKLLQN PSL LLS C + QN+KQ+HSQIIKTGLHNTQFALS
Sbjct: 9   SLVMPPPTLHFQPTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALS 68

Query: 67  KLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGF 126
           KLIE CA+SPFG+LSYALL+FE+I +PNQ IWN +IRG+SLSSSPV AI FYVRM+L G 
Sbjct: 69  KLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGV 128

Query: 127 VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARL 186
            PN+YTFPF+LKSCAK+ A  EGKQIH HVLKLGLESDPFVHTSLINMYAQNGEL  A L
Sbjct: 129 EPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAEL 188

Query: 187 VFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREE------------------- 227
           VF+KSSLRDAVS+TALITGY  RG LDDAR+LF+E+P+R+                    
Sbjct: 189 VFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEA 248

Query: 228 ----------NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDM 277
                     N  PNEST+VTVLSACA  GSLELGNWV S IE HGLGSNL + NALIDM
Sbjct: 249 LAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDM 308

Query: 278 YSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTF 337
           YSKCGDL KARDLFE I ++D+ISWNVMIGGY+H + YKEAL LFR+M QSN+EPNDVTF
Sbjct: 309 YSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTF 368

Query: 338 LSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG 397
           +S+LPACAYLGALDLGKWIHAYIDK    L N SLWTSLIDMYAKCGNI+AA+QVF GM 
Sbjct: 369 VSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMK 428

Query: 398 YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
            K+L SWNAMISGLAMHG A+ AL LF +M  EG +PDDITFVGVLSAC+HAGL+++GRQ
Sbjct: 429 PKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQ 488

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
            F++M++DY ISPKLQHYGCM+DLLGRAGLFDEAEAL+K MEMKPD AIW SLLGACRVH
Sbjct: 489 CFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVH 548

Query: 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577
           G +ELGE  AKHL ELEPENPGAYVLLSN+YA AGRWDDVA IRT+LNDKGMKKVPGCSS
Sbjct: 549 GNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSS 608

Query: 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALS 637
           IEV SVVHEFLVGDKVH QS+ IY+MLDEID LLEK+G VPDTSEVLYDMDEEWKEG+LS
Sbjct: 609 IEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSLS 668

Query: 638 HHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFK 697
           HHSEKLAIA+GLISTKP TTIRIVKNLRVCGNCHSA KLISKIFNREIIARDRNRFHHFK
Sbjct: 669 HHSEKLAIAFGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHFK 728

Query: 698 DGNCSCNDYW 707
           DG+CSC DYW
Sbjct: 729 DGSCSCMDYW 738


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score = 1093 bits (2827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/738 (71%), Positives = 601/738 (81%), Gaps = 36/738 (4%)

Query: 1   MALPPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHN 60
           +A P S+L     +L F   S PPYKL+ + PSL LLS C  +Q +KQ+HSQIIKTGLHN
Sbjct: 4   LASPVSTL----QVLSFSDPS-PPYKLVHDHPSLTLLSNCKTLQTLKQIHSQIIKTGLHN 58

Query: 61  TQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVR 120
           T FALSKLIE CAVSP GDLSYAL +F+TIR PN VIWN++IRG S S SP +A+++YV 
Sbjct: 59  THFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVH 118

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           MI SG  PN YTFP I KSC KI    EGKQ+HAHVLKLGLE + FVHTSLINMYAQNGE
Sbjct: 119 MISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGE 178

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE-------------- 226
           L +ARLVF+KSS+RDAVS+TALITGYAS+G+LD+AR+LFDE+P+R+              
Sbjct: 179 LVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQS 238

Query: 227 ---------------ENFVPNESTVVTVLSACAHMGS-LELGNWVCSLIEGHGLGSNLHV 270
                              PN ST+++VLSACA  GS L+LGNWV S IE  GLGSN+ +
Sbjct: 239 GRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRL 298

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            N LIDMY KCGDL +A +LFE I+ ++V+SWNVMIGGYTH S YKEAL LFR+M+QSNI
Sbjct: 299 VNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNI 358

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL-NNVSLWTSLIDMYAKCGNIKAA 389
           +PNDVTFLS+LPACA LGALDLGKW+HAY+DKN + + N V+LWTSLIDMYAKCG++  A
Sbjct: 359 DPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVA 418

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
           +++FD M  K+LA+WNAMISG AMHG  D AL LFSRM  EG  PDDITFVGVL+AC HA
Sbjct: 419 KRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHA 478

Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
           GLL +GR+YF++MIQDYK+SPKL HYGCM+DL GRAGLFDEAE L+K MEMKPD AIW S
Sbjct: 479 GLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCS 538

Query: 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
           LLGACR+H R+EL ESVAKHL ELEPENP AYVLLSN+YAGAGRW+DVA IRTRLND  M
Sbjct: 539 LLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRM 598

Query: 570 KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE 629
           KKVPGCSSIEV SVVHEFLVGDKVHPQS  IY+MLDEID  LEK+GFVPDTSEVLYDMDE
Sbjct: 599 KKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEIDMRLEKAGFVPDTSEVLYDMDE 658

Query: 630 EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
           EWKEG LSHHSEKLAIA+GLISTKPGTTIRI+KNLRVCGNCHSATKLISKIFNREIIARD
Sbjct: 659 EWKEGVLSHHSEKLAIAFGLISTKPGTTIRIMKNLRVCGNCHSATKLISKIFNREIIARD 718

Query: 690 RNRFHHFKDGNCSCNDYW 707
           RNRFHHFKDG+CSC DYW
Sbjct: 719 RNRFHHFKDGSCSCKDYW 736


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score = 1045 bits (2702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/722 (69%), Positives = 593/722 (82%), Gaps = 30/722 (4%)

Query: 15  LHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAV 74
            H  PSSDPPY++LQ  PSL LLSKC +++  KQ+H+ IIKTGLHNT FALSKLIE  AV
Sbjct: 14  FHVLPSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAV 73

Query: 75  SPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFP 134
           S  GD+SYA+ +F +I EPN  IWN++IRG S+S SP +A+ F+VRMI SG  PN+YTFP
Sbjct: 74  SRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFP 133

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
           F+LKSCAK+++  EGKQIHAHVLKLG  SD F+HTSLINMYAQ+GE+ +A+LVF++S+ R
Sbjct: 134 FLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFR 193

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPI-----------------------------R 225
           DA+S+TALI GYA  GY+D ARQLFDEMP+                             R
Sbjct: 194 DAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMR 253

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
           + N  PNEST+V+VLSACA   +L+LGN + S IE  GL SNL + NALIDMYSKCGDL 
Sbjct: 254 KANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQ 313

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
            AR+LF+ + +RDVISWNVMIGGYTH   YKEAL LFR+ML S +EP ++TFLS+LP+CA
Sbjct: 314 TARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCA 373

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
           +LGA+DLGKWIHAYI+KN   ++     TSLID+YAKCGNI AA QVFDGM  K+LASWN
Sbjct: 374 HLGAIDLGKWIHAYINKNFNSVSTSLS-TSLIDLYAKCGNIVAARQVFDGMKIKSLASWN 432

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
           AMI GLAMHG+ADKA  LFS+M  +G++P++ITFVG+LSAC HAGL+D+G+Q+F++M+QD
Sbjct: 433 AMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQD 492

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
           YKISPK QHYGCM+DLLGRAGLF+EAE+LL+ ME+KPD AIW SLLGACR HGR+ELGE 
Sbjct: 493 YKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGEL 552

Query: 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVH 585
           VA+ L ELEP+NPGAYVLLSN+YAGAG+WDDVA IRTRLND+GMKKVPGC++IEV +VVH
Sbjct: 553 VAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVH 612

Query: 586 EFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAI 645
           EFLVGDKVHPQS+ IY ML+E+D  L+  GFV DTSEVLYDMDEEWKEGALSHHSEKLAI
Sbjct: 613 EFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKEGALSHHSEKLAI 672

Query: 646 AYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCND 705
           A+GLISTKPGT IRI+KNLRVC NCHSATKLISKIFNREIIARDRNRFHHFKDG+CSCND
Sbjct: 673 AFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCND 732

Query: 706 YW 707
           YW
Sbjct: 733 YW 734


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score = 1009 bits (2610), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/732 (65%), Positives = 577/732 (78%), Gaps = 34/732 (4%)

Query: 10  LSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLI 69
           LSP  +HF PSSDPPYKLL+N P L LL+KC ++ ++KQ+HS IIK+GLHNT FA SKLI
Sbjct: 5   LSPPFVHFLPSSDPPYKLLENHPHLNLLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLI 64

Query: 70  EICAVSPFGDLSYALLVFETI--REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV 127
           E CA+SP  DLSYAL +F +I  + PN  IWN +IR HSL+ +P  ++  + +M+ SG  
Sbjct: 65  EFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLY 124

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           PN++TFP + KSCAK  A  E KQ+HAH LKL L   P VHTSLI+MY+Q GEL  ARLV
Sbjct: 125 PNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLV 184

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP------------------------ 223
           F+KS+LRDAVS+TALITGY S G++DDAR+LFDE+P                        
Sbjct: 185 FDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEAL 244

Query: 224 -----IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMY 278
                ++E +  PN+ST+V+VLSAC H+ SLELG W+ S +   G G NL + NAL+DMY
Sbjct: 245 ACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMY 304

Query: 279 SKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
           SKCG++  AR LF+ +E +DVI WN MIGGY H S Y+EAL+LF  ML+ N+ PNDVTFL
Sbjct: 305 SKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFL 364

Query: 339 SVLPACAYLGALDLGKWIHAYIDKNHQ---KLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
           +VLPACA LGALDLGKW+HAYIDKN +    +NNVSLWTS+I MYAKCG ++ AEQVF  
Sbjct: 365 AVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRS 424

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
           MG ++LASWNAMISGLAM+G A++AL LF  MI EG QPDDITFVGVLSAC  AG +++G
Sbjct: 425 MGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELG 484

Query: 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACR 515
            +YF++M +DY ISPKLQHYGCM+DLL R+G FDEA+ L+  MEM+PD AIW SLL ACR
Sbjct: 485 HRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACR 544

Query: 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGC 575
           +HG++E GE VA+ L ELEPEN GAYVLLSN+YAGAGRWDDVA IRT+LNDKGMKKVPGC
Sbjct: 545 IHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGC 604

Query: 576 SSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGA 635
           +SIE+  VVHEFLVGDK HPQS++I+ MLDE+D LLE++GFVPDTSEVLYDMDEEWKEGA
Sbjct: 605 TSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFVPDTSEVLYDMDEEWKEGA 664

Query: 636 LSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHH 695
           L+ HSEKLAIA+GLISTKPG+TIRIVKNLRVC NCHSATKLISKIFNREIIARDRNRFHH
Sbjct: 665 LTQHSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHSATKLISKIFNREIIARDRNRFHH 724

Query: 696 FKDGNCSCNDYW 707
           FKDG CSCND W
Sbjct: 725 FKDGFCSCNDRW 736


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score = 1008 bits (2606), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/689 (71%), Positives = 553/689 (80%), Gaps = 55/689 (7%)

Query: 7   SLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALS 66
           SL + P  LHF P+SDPPYKLLQN PSL LLS C + QN+KQ+HSQIIKTGLHNTQFALS
Sbjct: 9   SLVMPPPTLHFQPTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALS 68

Query: 67  KLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGF 126
           KLIE CA+SPFG+LSYALL+FE+I +PNQ IWN +IRG+SLSSSPV AI FYVRM+L G 
Sbjct: 69  KLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGV 128

Query: 127 VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARL 186
            PN+YTFPF+LKSCAK+ A  EGKQIH HVLKLGLESDPFVHTSLINMYAQNGEL  A L
Sbjct: 129 EPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAEL 188

Query: 187 VFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREE------------------- 227
           VF+KSSLRDAVS+TALITGY  RG LDDAR+LF+E+P+R+                    
Sbjct: 189 VFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEA 248

Query: 228 ----------NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDM 277
                     N  PNEST+VTVLSACA  GSLELGNWV S IE HGLGSNL + NALIDM
Sbjct: 249 LAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDM 308

Query: 278 YSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTF 337
           YSKCGDL KARDLFE I ++D+ISWNVMIGGY+H + YKEAL LFR+M QSN+EPNDVTF
Sbjct: 309 YSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTF 368

Query: 338 LSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG 397
           +S+LPACAYLGALDLGKWIHAYIDK    L N SLWTSLIDMYAKCGNI+AA+QVF GM 
Sbjct: 369 VSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMK 428

Query: 398 YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
            K+L SWNAMISGLAMHG A+ AL LF +M  EG +PDDITFVGVLSAC+HAGL+++GRQ
Sbjct: 429 PKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQ 488

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
            F++M++DY ISPKLQHYGCM+DLLGRAGLFDEAEAL+K MEMKPD AIW SLLGACRVH
Sbjct: 489 CFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVH 548

Query: 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577
           G +ELGE  AKHL ELEPENPGAYVLLSN+YA AGRWDDVA IRT+LNDKGMKK      
Sbjct: 549 GNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKK------ 602

Query: 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEID-ALLEKSGFVPDTSEVLYDMDEEWKEGAL 636
                               + IY+MLDEID +  E+ G VPDTSEVLYDMDEEWKEG+L
Sbjct: 603 -------------------XQDIYKMLDEIDQSFGERPGXVPDTSEVLYDMDEEWKEGSL 643

Query: 637 SHHSEKLAIAYGLISTKPGTTIRIVKNLR 665
           SHHSEKLAIA+GLISTKP TTIRIVKNLR
Sbjct: 644 SHHSEKLAIAFGLISTKPETTIRIVKNLR 672


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  994 bits (2571), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/730 (66%), Positives = 577/730 (79%), Gaps = 33/730 (4%)

Query: 11  SPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIE 70
           SPSILHF P+SDPPYK+L+  P L LL KC N+   KQ+HS IIKTGL+NT F  SKLI 
Sbjct: 9   SPSILHFLPASDPPYKILEQHPYLNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIH 68

Query: 71  ICAVSPFGDLSYALLVFETIREP---NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV 127
            CAVSP GDLSYAL +FE  ++    N  IWN++IRG+SLSSSP+ ++  + RM+  G  
Sbjct: 69  FCAVSPSGDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQ 128

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           PN++TFPF+ KSC K  A  EGKQ+HAH LKL L  +P VHTS+I+MYA  GE++ ARLV
Sbjct: 129 PNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLV 188

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR---------------------- 225
           F+KSSLRDAVS+TALITGY S+G LDDAR+LFDE+P++                      
Sbjct: 189 FDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAI 248

Query: 226 -------EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMY 278
                  E N +PN+ST+V VLSAC H  S ELG W+ S +  +G GSNL +TNALIDMY
Sbjct: 249 VCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMY 308

Query: 279 SKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
            KCG+   AR+LF+ IE++DVISWN MIGGY++ S Y+EAL LF  ML+SN++PNDVTFL
Sbjct: 309 CKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFL 368

Query: 339 SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
            +L ACA LGALDLGKW+HAYIDKN +  +N SLWTSLIDMYAKCG I+AAE+VF  M  
Sbjct: 369 GILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHS 428

Query: 399 KTLASWNAMISGLAMHGKADKALSLFSRMIGEGL-QPDDITFVGVLSACNHAGLLDIGRQ 457
           + LASWNAM+SG AMHG A++AL+LFS M+ +GL +PDDITFVGVLSAC  AGL+D+G Q
Sbjct: 429 RNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQ 488

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
           YF +MIQDY ISPKLQHYGCM+DLL RA  F+EAE L+K MEM+PD AIW SLL AC+ H
Sbjct: 489 YFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAH 548

Query: 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577
           GR+E GE VA+ L +LEPEN GA+VLLSN+YAGAGRWDDVA IRTRLNDKGMKKVPGC+S
Sbjct: 549 GRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTS 608

Query: 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALS 637
           IE+   VHEFLVGDK HP+  +IY+ML+E+D LLE++GFVP+TSEVLYDMDEEWKEGALS
Sbjct: 609 IEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTSEVLYDMDEEWKEGALS 668

Query: 638 HHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFK 697
            HSEKLAI++GLI TKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFK
Sbjct: 669 QHSEKLAISFGLIKTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFK 728

Query: 698 DGNCSCNDYW 707
           DG CSCND W
Sbjct: 729 DGFCSCNDCW 738


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  967 bits (2500), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/735 (62%), Positives = 571/735 (77%), Gaps = 32/735 (4%)

Query: 5   PSSLTLSPSILHF-PPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQF 63
           P ++  S    HF P SSDPPY  L+N PSL+LL  C  +Q+++ +H+Q+IKTGLHNT +
Sbjct: 7   PLTVPSSSYPFHFLPSSSDPPYDSLRNHPSLSLLHNCKTLQSLRLIHAQMIKTGLHNTNY 66

Query: 64  ALSKLIEICAVSP-FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI 122
           ALSKL+E+C +SP F  L YA+ VFETI+EPN +IWN + RGH+LSS PV A+K YV MI
Sbjct: 67  ALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMI 126

Query: 123 LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELE 182
             G +PN+YTFPF+LKSCAK  A  EG+QIH HVLKLG + D FVHTSLI++Y QNG LE
Sbjct: 127 SLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLE 186

Query: 183 SARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE---------------- 226
            AR VF++S  RD VSYTALI GYASRGY++ A++LFDE+P+++                
Sbjct: 187 DARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGN 246

Query: 227 -------------ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
                         N  P+EST+VTV+SACA  GS+ELG  V S I+ HG GSNL + N+
Sbjct: 247 YKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNS 306

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           L+D+YSKCG+L  A  LFE +  +DVISWN +IGGYTH + YKEAL+LF++ML+S   PN
Sbjct: 307 LMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPN 366

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS-LWTSLIDMYAKCGNIKAAEQV 392
           DVT LS+LPACA+LGA+D+G+WIH YIDK  +   N S L TSLIDMYAKCG+I+AA QV
Sbjct: 367 DVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQV 426

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F+ + +K+L+SWNAMI G AMHG+AD A  +FSRM   G++PDDITFVG+LSAC+ +G+L
Sbjct: 427 FNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGML 486

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           D+GR  F  M QDYKI+PKL+HYGCM+DLLG +GLF EAE ++  MEM+PD  IW SLL 
Sbjct: 487 DLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLK 546

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           AC++ G +ELGES A++L+++EPENPG YVLLSN+YA AGRW++VA IR  LNDKGMKKV
Sbjct: 547 ACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKV 606

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
           PGCSSIE+ SVVHEF++GDK HP+++ IY ML+E++ LLEK+GFVPDTSEVL +M+EEWK
Sbjct: 607 PGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWK 666

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
           EGAL HHSEKLAIA+GLISTKPGT + IVKNLRVC NCH ATKLISKI+ REIIARDR R
Sbjct: 667 EGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTR 726

Query: 693 FHHFKDGNCSCNDYW 707
           FHHF+DG CSCNDYW
Sbjct: 727 FHHFRDGVCSCNDYW 741


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  948 bits (2451), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/741 (62%), Positives = 574/741 (77%), Gaps = 34/741 (4%)

Query: 1   MALPPSSLTLSPSI--LHF-PPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTG 57
           M L  S LT+  S    HF P SSDPPY  ++N PSL+LL  C  +Q+++ +H+Q+IK G
Sbjct: 1   MMLSCSPLTVPSSSYPFHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIG 60

Query: 58  LHNTQFALSKLIEICAVSP-FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIK 116
           LHNT +ALSKLIE C +SP F  L YA+ VF+TI+EPN +IWN + RGH+LSS PV A+K
Sbjct: 61  LHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALK 120

Query: 117 FYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYA 176
            YV MI  G +PN+YTFPF+LKSCAK  A  EG+QIH HVLKLG + D +VHTSLI+MY 
Sbjct: 121 LYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYV 180

Query: 177 QNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE---------- 226
           QNG LE A  VF+KS  RD VSYTALI GYASRGY+++A++LFDE+P+++          
Sbjct: 181 QNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISG 240

Query: 227 -------------------ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
                               N  P+EST+VTV+SACA  GS+ELG  V   I+ HG GSN
Sbjct: 241 YAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSN 300

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
           L + NALID+YSKCG+L  A  LFE +  +DVISWN +IGGYTH + YKEAL+LF++ML+
Sbjct: 301 LKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 360

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS-LWTSLIDMYAKCGNI 386
           S   PNDVT LS+LPACA+LGA+D+G+WIH YIDK  + + N S L TSLIDMYAKCG+I
Sbjct: 361 SGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDI 420

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
           +AA QVF+ + +K+L+SWNAMI G AMHG+AD +  LFSRM   G+QPDDITFVG+LSAC
Sbjct: 421 EAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSAC 480

Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
           +H+G+LD+GR  F  M QDYK++PKL+HYGCM+DLLG +GLF EAE ++  MEM+PD  I
Sbjct: 481 SHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVI 540

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
           W SLL AC++HG +ELGES A++L+++EPENPG+YVLLSN+YA AGRW++VA  R  LND
Sbjct: 541 WCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLND 600

Query: 567 KGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYD 626
           KGMKKVPGCSSIE+ SVVHEF++GDK HP+++ IY ML+E++ LLEK+GFVPDTSEVL +
Sbjct: 601 KGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQE 660

Query: 627 MDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREII 686
           M+EEWKEGAL HHSEKLAIA+GLISTKPGT + IVKNLRVC NCH ATKLISKI+ REII
Sbjct: 661 MEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREII 720

Query: 687 ARDRNRFHHFKDGNCSCNDYW 707
           ARDR RFHHF+DG CSCNDYW
Sbjct: 721 ARDRTRFHHFRDGVCSCNDYW 741


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  918 bits (2373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/710 (62%), Positives = 557/710 (78%), Gaps = 31/710 (4%)

Query: 29  QNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSP-FGDLSYALLVF 87
           +N PSL+LL  C  +Q+++ +H+Q+IKTGLHNT +ALS+L+E C +SP F  L YA+ VF
Sbjct: 1   RNHPSLSLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVF 60

Query: 88  ETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAIS 147
           ETI+EPN +IWN + RGH+LSS PV AIK YV MI  G +PN+YTFPF+LKSCAK+    
Sbjct: 61  ETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSK 120

Query: 148 EGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA 207
           EG+QIH HVLKLG E D +VHTSLI+MY +NG  + A  VF+ SS RD VSYTALITGYA
Sbjct: 121 EGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYA 180

Query: 208 SRGYLDDARQLFDEMPIRE-----------------------------ENFVPNESTVVT 238
           SRGY++ A+++FDE+P+++                              N  P+EST+VT
Sbjct: 181 SRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVT 240

Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD 298
           V+SACA  GS++LG  V S I+ HGLGSNL + NALID+YSKCG++  A  LF+ +  +D
Sbjct: 241 VVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKD 300

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
           VISWN MIGGYTH + YKEAL+LF++ML+S   PNDVT LS+LPACA LGA+D G+WIH 
Sbjct: 301 VISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHV 360

Query: 359 YIDKNHQKLNNVS-LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA 417
           YIDK  + + N S L TSLIDMYAKCG+I+AA QVF+ M ++TL++ NAMI G AMHG+A
Sbjct: 361 YIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRA 420

Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
           + A  +FSRM   G++PDDITFVG+LSAC+H+G+LD+GR+ F +M Q+YKI+PKL+HYGC
Sbjct: 421 NAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGC 480

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537
           M+DLLG  GLF EAE ++ TM M+PD  IW SLL AC++HG +ELGES A+ L+++EPEN
Sbjct: 481 MIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPEN 540

Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQS 597
           PG+YVLLSN+YA AGRW++VA IR  LNDKGMKKVPGCSSIE+ SVVHEF++GDK HP++
Sbjct: 541 PGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRN 600

Query: 598 KHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTT 657
           + IY ML+E++ LLE++GFVPDTSEVL +M+EE+K+GAL HHSEKLAIA+GLISTKPGT 
Sbjct: 601 REIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEFKQGALRHHSEKLAIAFGLISTKPGTK 660

Query: 658 IRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           + IVKNLRVC NCH ATKLISKI+ REIIARDR RFHHF+DG CSCNDYW
Sbjct: 661 LTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  915 bits (2364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/710 (61%), Positives = 556/710 (78%), Gaps = 31/710 (4%)

Query: 29  QNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSP-FGDLSYALLVF 87
           +N PSL+LL  C  +Q+++ +H+Q+IKTGLHNT +ALSKLIE C +SP F  L YA+ VF
Sbjct: 1   RNHPSLSLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVF 60

Query: 88  ETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAIS 147
           ETI+EPN +IWN + RGH+LSS PV A+  YV MI  G +PN YTFPF+LKSCAK  A  
Sbjct: 61  ETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFR 120

Query: 148 EGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA 207
           EG+QIH HVLKLG + D +VHTSLI+MY QNG LE AR VF++SS RD VSYTALITGYA
Sbjct: 121 EGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYA 180

Query: 208 SRGYLDDARQLFDEMPIRE-----------------------------ENFVPNESTVVT 238
           S+GY+  A+++FDE+PI++                              N  P+EST+V+
Sbjct: 181 SKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVS 240

Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD 298
           V+SACA   S+ELG  V S I+ HG GSNL + NALID+Y KCG++  A  LFE +  +D
Sbjct: 241 VVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKD 300

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
           VISWN +IGGYTH + YKEAL+LF++ML+S   PNDVT LS+LPACA+LGA+++G+WIH 
Sbjct: 301 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHV 360

Query: 359 YIDKNHQKLNNVSL-WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA 417
           YI+K  + + N S   TSLIDMYAKCG+I+AA+QVFD +  ++L+SWNAMI G AMHG+A
Sbjct: 361 YINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRA 420

Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
           + A  +FSRM    ++PDDITFVG+LSAC+H+G+LD+GR  F +M +DYKI+PKL+HYGC
Sbjct: 421 NAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGC 480

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537
           M+DLLG +GLF EAE ++ TMEM+PD  IW SLL AC+++  +ELGES A++L+++EP+N
Sbjct: 481 MIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKN 540

Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQS 597
           PG+YVLLSN+YA AGRW++VA IR  LNDKGMKKVPGCSSIE+ SVVHEF++GDK HP++
Sbjct: 541 PGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRN 600

Query: 598 KHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTT 657
           + IY ML+E++ LLE++GFVPDTSEVL +M+EEWKEGAL HHSEKLAIA+GLISTKPGT 
Sbjct: 601 REIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTK 660

Query: 658 IRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           + IVKNLRVC NCH ATKLISKI+ REIIARDR RFHHF+DG CSCNDYW
Sbjct: 661 LTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  912 bits (2358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/710 (61%), Positives = 551/710 (77%), Gaps = 31/710 (4%)

Query: 29  QNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSP-FGDLSYALLVF 87
           +N PSL+LL  C  +Q+++ +H+Q+IKTGLHNT +ALSKL+E C +SP F  L YA+ VF
Sbjct: 1   RNHPSLSLLHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVF 60

Query: 88  ETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAIS 147
           +TI+EP  +IWN + RGH+LSS PV A+K YV M+  G +PN+YTFPF+LKSCAK  A  
Sbjct: 61  DTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFK 120

Query: 148 EGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA 207
           EG+Q+H  VLK G + D ++HTSLI+MY QNG LE A+ V +KSS RD VSYTALITGYA
Sbjct: 121 EGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYA 180

Query: 208 SRGYLDDARQLFDEMPIRE-----------------------------ENFVPNESTVVT 238
           SRG ++ A ++FDE+P+++                              N  P+EST+VT
Sbjct: 181 SRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVT 240

Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD 298
           VLSACA  GS+ELG  V S I  HG G NL + NALID+YSKCG+L  A  LF+ +  +D
Sbjct: 241 VLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKD 300

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
           VISWN +IGGYTH + YKEAL+LF+ ML+S  +PNDVT LS+L ACA+LGA+D+G+WIH 
Sbjct: 301 VISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHV 360

Query: 359 YIDKNHQKLNNVS-LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA 417
           YIDK  + + N S L TSLIDMYAKCG+I+AA+QVFD M  ++L+SWNAMI G AMHG+A
Sbjct: 361 YIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRA 420

Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
           + A  +FSRM   G++PDDITFVG+LSAC+H+G+LD+GR  F +M +DYK+ PKL+HYGC
Sbjct: 421 NAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGC 480

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537
           M+DL G +GLF EAE ++ TMEM+PD  IW SLL AC++HG +ELGES A++L+++EPEN
Sbjct: 481 MIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPEN 540

Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQS 597
           PG+YVLLSN+YA A RW++VA  R  LNDKGMKKVPGCSSIE+ SVVHEF++GDK HP++
Sbjct: 541 PGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRN 600

Query: 598 KHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTT 657
           + IY ML+E++ LLE++GFVPDTSEVL +M+EEWKEGAL HHSEKLAIA+GLISTKPGT 
Sbjct: 601 REIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTK 660

Query: 658 IRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           + IVKNLRVC NCH ATKLISKI+ REIIARDR RFHHF+DG CSCNDYW
Sbjct: 661 LTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGECSCNDYW 710


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  900 bits (2327), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/694 (62%), Positives = 546/694 (78%), Gaps = 31/694 (4%)

Query: 45  NIKQVHSQIIKTGLHNTQFALSKLIEICAVSP-FGDLSYALLVFETIREPNQVIWNNIIR 103
           +++ +H+Q+IKTGLHNT +ALSKLIE C +SP F  L YA+ VFETI+EPN +IWN + R
Sbjct: 2   SLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFR 61

Query: 104 GHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLES 163
           GH+LSS PV A+  YV MI  G +PN YTFPF+LKSCAK  A  EG+QIH HVLKLG + 
Sbjct: 62  GHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDL 121

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
           D +VHTSLI+MY QNG LE AR VF++SS RD VSYTALITGYAS+GY+  A+++FDE+P
Sbjct: 122 DLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIP 181

Query: 224 IRE-----------------------------ENFVPNESTVVTVLSACAHMGSLELGNW 254
           I++                              N  P+EST+V+V+SACA   S+ELG  
Sbjct: 182 IKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQ 241

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           V S I+ HG GSNL + NALID+Y KCG++  A  LFE +  +DVISWN +IGGYTH + 
Sbjct: 242 VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNL 301

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL-W 373
           YKEAL+LF++ML+S   PNDVT LS+LPACA+LGA+++G+WIH YI+K  + + N S   
Sbjct: 302 YKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHR 361

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
           TSLIDMYAKCG+I+AA+QVFD +  ++L+SWNAMI G AMHG+A+ A  +FSRM    ++
Sbjct: 362 TSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIE 421

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
           PDDITFVG+LSAC+H+G+LD+GR  F +M +DYKI+PKL+HYGCM+DLLG +GLF EAE 
Sbjct: 422 PDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEE 481

Query: 494 LLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGR 553
           ++ TMEM+PD  IW SLL AC++HG +ELGES A++L+++EP+NPG+YVLLSN+YA AGR
Sbjct: 482 MINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGR 541

Query: 554 WDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEK 613
           W++VA IR  LNDKGMKKVPGCSSIE+ SVVHEF++GDK HP+++ IY ML+E++ LLE+
Sbjct: 542 WNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEE 601

Query: 614 SGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSA 673
           +GFVPDTSEVL +M+EEWKEGAL HHSEKLAIA+GLISTKPGT + IVKNLRVC NCH A
Sbjct: 602 AGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEA 661

Query: 674 TKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           TKLISKI+ REIIARDR RFHHF+DG CSCNDYW
Sbjct: 662 TKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 695


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  898 bits (2321), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/706 (61%), Positives = 551/706 (78%), Gaps = 31/706 (4%)

Query: 29  QNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSP-FGDLSYALLVF 87
           +N PSL+LL  C  +Q+++ +H+++IKTGLHNT +ALSKLIE   +SP F  L+YA+ VF
Sbjct: 1   RNHPSLSLLHNCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVF 60

Query: 88  ETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAIS 147
           ++I+EPN +IWN + RGH+LSS PV A+  YV MI  G VPN+YTFPF+LK+CAK  A  
Sbjct: 61  DSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFR 120

Query: 148 EGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA 207
           EG+QIH HVLKLG + D +VHTSLI MY +NG  E AR VF++SS RD VSYTALI GYA
Sbjct: 121 EGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYA 180

Query: 208 SRGYLDDARQLFDEMPIRE-----------------------------ENFVPNESTVVT 238
           S GY+  A+++FDE+P+++                              N  P+EST+VT
Sbjct: 181 SNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVT 240

Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD 298
           VLSACA   S+ELG  V S I+ HG GSNL + NALID+Y KCG++  A  LFE +  +D
Sbjct: 241 VLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKD 300

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
           VISWN +IGGYTH + YKEAL+LF++ML+S   PN+VT LS+LPACA+LGA+D+G+WIH 
Sbjct: 301 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHV 360

Query: 359 YIDKNHQKLNN-VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA 417
           YIDK  + ++N  SL TSLIDMYAKCG+I+AA+QVFD M  ++L+SWNAMI G AMHG+A
Sbjct: 361 YIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRA 420

Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
           + A  +FSRM  +G++PDDITFVG+LSAC+H+G+LD+GR  F +M +DYKI+PKL+HYGC
Sbjct: 421 NPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGC 480

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537
           M+DLLG +GLF EAE ++ +MEM PD  IW SLL AC++HG +ELGES A++L+++EP+N
Sbjct: 481 MIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKN 540

Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQS 597
            G+YVLLSN+YA AGRW++VA  R  LNDKGMKKVPGCSSIE+ SVVHEF++GDK+HP++
Sbjct: 541 SGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRN 600

Query: 598 KHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTT 657
           + IY ML+E++ LLE++GFVPDTSEVL +M+EEWKEGAL HHSEKLAIA+GLISTKPGT 
Sbjct: 601 REIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTK 660

Query: 658 IRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSC 703
           + IVKNLRVC NCH ATKLISKI+ REIIARDR RFHHF DG CSC
Sbjct: 661 LTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFXDGVCSC 706


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/691 (61%), Positives = 528/691 (76%), Gaps = 32/691 (4%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSP-FGDLSYALLVFETIREPNQVIWNNIIRGHSL 107
            H+Q++KTGLHNT +ALSKL+E+C VSP F  L YA+ VFET +EPN +IWN ++RG + 
Sbjct: 1   THAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLAS 60

Query: 108 SSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFV 167
           SS  V  ++ YVRM+  G VPN YTFPF+LKSCAK     EG+QIHA V+KLG E D + 
Sbjct: 61  SSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYA 120

Query: 168 HTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE- 226
           HTSLI+MYA+NG LE AR VF+ SS RD VS TALITGYASRG +  AR++FD +  R+ 
Sbjct: 121 HTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDV 180

Query: 227 ----------------------------ENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
                                        N  P+E T+V+VLSACA  GS+ELG  + +L
Sbjct: 181 VSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTL 240

Query: 259 IEG-HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
           ++  HG GS+L + NA I +YSKCGD+  A  LFE +  +DV+SWN +IGGYTH + YKE
Sbjct: 241 VDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKE 300

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS-LWTSL 376
           AL+LF++ML+S   PNDVT LSVLPACA+LGA+D+G+WIH YIDK  + + N S L TSL
Sbjct: 301 ALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSL 360

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           IDMYAKCG+I+AA QVF+ M +K+L+SWNAMI G AMHG+A+ A  LFSRM   G++PDD
Sbjct: 361 IDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDD 420

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
           IT VG+LSAC+H+GLLD+GR  F ++ QDY I+PKL+HYGCM+DLLG AGLF EAE ++ 
Sbjct: 421 ITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIH 480

Query: 497 TMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
            M M+PD  IW SLL AC++HG LEL ES A+ L+E+EPEN G+YVLLSN+YA AGRW+D
Sbjct: 481 MMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWED 540

Query: 557 VATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGF 616
           VA IR  LN KGMKKVPGCSSIE+ SVVHEF++GDK+HPQS+ IY ML+E+D LLE++GF
Sbjct: 541 VARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRMLEEMDVLLEEAGF 600

Query: 617 VPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKL 676
           VPDTSEVL +M+EEWKEGAL HHSEKLAIA+GLISTKPGT + +VKNLRVC NCH ATKL
Sbjct: 601 VPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTVVKNLRVCRNCHEATKL 660

Query: 677 ISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           ISKI+ REI+ARDR RFHHF+DG CSC DYW
Sbjct: 661 ISKIYKREIVARDRTRFHHFRDGVCSCCDYW 691


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  878 bits (2269), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/679 (61%), Positives = 526/679 (77%), Gaps = 31/679 (4%)

Query: 54  IKTGLHNTQFALSKLIEICAVSP-FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPV 112
           IK GLHNT +ALSKL++ C ++P F  L YA+ VF++I+EPNQ+ WN +IRGH+LSS P+
Sbjct: 1   IKIGLHNTNYALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPI 60

Query: 113 VAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLI 172
            A+  YV MI  G  PN+YTFPF+ KSCAK  A  EGKQIHA +LK GL  D  VHTSLI
Sbjct: 61  SALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLI 120

Query: 173 NMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE------ 226
           +MYAQNG +E A  VF+ SS RD VSYTA+ITGYASRG +D A+++FDE+PI++      
Sbjct: 121 SMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNA 180

Query: 227 -----------------------ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG 263
                                   +  P+EST+ TVLS C H G++ELG  + S I+ HG
Sbjct: 181 MISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHG 240

Query: 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFR 323
            GSNL + NALID+YSKCG++ +A  LFE ++ +DVISWN +IGGY + + +KEAL++F+
Sbjct: 241 FGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQ 300

Query: 324 QMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL-NNVSLWTSLIDMYAK 382
           +ML+    PNDVT LS+LPACA+LGA+D+G+WIH YIDK  + +  N SL TSLIDMYAK
Sbjct: 301 EMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAK 360

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
           CGNI+AA QVFD +  K+L+S NAMI G AMHG+AD A  L SRM  +G++PDDITFVG+
Sbjct: 361 CGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGL 420

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
           LSAC+HAGL D+GR+ F +M  DY+I PKL+HYGCM+DLLGR+GLF EAE L+ +M M+P
Sbjct: 421 LSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEP 480

Query: 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562
           D  IW SLL AC++H  LELGE +A+ L+++EP+NPG+YVLLSN+YA + RWDDVA +RT
Sbjct: 481 DGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRT 540

Query: 563 RLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSE 622
            LNDKG+KKVPGCSSIE+ S+VHEFL+GDK HPQ+K IY+ML+EID+LL ++GFV DTSE
Sbjct: 541 LLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFHPQNKEIYKMLEEIDSLLAETGFVSDTSE 600

Query: 623 VLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFN 682
           VL +M+EE KEGALS+HSEKLAIA+GLISTKPGT +RIVKNLRVC NCH ATKLISKI+ 
Sbjct: 601 VLQEMEEELKEGALSYHSEKLAIAFGLISTKPGTKLRIVKNLRVCRNCHEATKLISKIYK 660

Query: 683 REIIARDRNRFHHFKDGNC 701
           REIIARDR+RFHHFKDG C
Sbjct: 661 REIIARDRSRFHHFKDGMC 679



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 206/409 (50%), Gaps = 34/409 (8%)

Query: 38  SKCTNMQNIKQVHSQIIKTGL------HN---TQFALSKLIE------------------ 70
           +K    Q  KQ+H+QI+K GL      H    + +A + ++E                  
Sbjct: 89  AKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYT 148

Query: 71  --ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVP 128
             I   +  G++  A  +F+ I   + V WN +I G++       A++ +  M+     P
Sbjct: 149 AMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKP 208

Query: 129 NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF 188
           +  T   +L +C     +  G+QIH+ +   G  S+  +  +LI++Y++ GE+E A  +F
Sbjct: 209 DESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLF 268

Query: 189 NKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS 248
                +D +S+  LI GYA   +  +A  +F EM    E   PN+ T++++L ACAH+G+
Sbjct: 269 EGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGE--TPNDVTMLSILPACAHLGA 326

Query: 249 LELGNWVCSLIEG--HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMI 306
           +++G W+   I+    G+ +N  +  +LIDMY+KCG++  A  +F++I  + + S N MI
Sbjct: 327 IDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMI 386

Query: 307 GGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK 366
            G+        A  L  +M +  IEP+D+TF+ +L AC++ G  DLG+ I   +  +++ 
Sbjct: 387 FGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRI 446

Query: 367 LNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMH 414
              +  +  +ID+  + G  K AE++ + M  +     W +++    +H
Sbjct: 447 EPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIH 495


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  871 bits (2250), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/675 (62%), Positives = 517/675 (76%), Gaps = 35/675 (5%)

Query: 68  LIEICAVSP-FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGF 126
           L+E+C VSP F  L YA+ VFETI+EPN +IWN ++RGH+ SS PV A++ YVRM+  G 
Sbjct: 1   LLELCVVSPHFDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGH 60

Query: 127 VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARL 186
           +PN+Y+FPF+LKSCAK  A  EG+QIHA VLKLG   D +VHTSLI+MYA+NG LE AR 
Sbjct: 61  LPNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARK 120

Query: 187 VFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE-------------------- 226
           VF+ SS RD VS TALITGYASRG    AR++FDE+  R+                    
Sbjct: 121 VFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEA 180

Query: 227 ---------ENFVPNESTVVTVLSACAHMGSLELG----NWVCSLIEGHGLGSNLHVTNA 273
                     N  P+E T+V+V+SACA  GS+ELG    +WV    + HG  S+L + NA
Sbjct: 181 LELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNA 240

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           LID+YSKCGD+  A  LFE +  +DV+SWN +IGGYTHT+ YKEAL+LF++ML+S   PN
Sbjct: 241 LIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPN 300

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNN-VSLWTSLIDMYAKCGNIKAAEQV 392
           DVT LSVLPACA+LGA+D+G+WIH YIDK  + + N  SL TSLIDMYAKCG+I+AA QV
Sbjct: 301 DVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQV 360

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F+ M Y++L+SWNAMI G AMHG+A+ A  LFSRM G  ++PDDITFVG+LSAC+H+GLL
Sbjct: 361 FNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLL 420

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           D+GRQ F +M QDY ++PKL+HYGCM+DLLG +GLF EAE ++ TM M+PD  IW SLL 
Sbjct: 421 DLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLK 480

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           AC+ HG LEL ES A+ L+++EPEN G+YVLLSN+YA AGRW+DVA +R  LN KGMKKV
Sbjct: 481 ACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKV 540

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
           PGCSSIEV SVVHEF++GDK+HP+ + IY ML+E+D  LE++GF PDTSEVL +M+EEWK
Sbjct: 541 PGCSSIEVDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQEMEEEWK 600

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
           EGAL HHSEKLAIA+GLISTKPGT + IVKNLRVC NCH ATKLISKI+ REI+ARDR R
Sbjct: 601 EGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIVARDRTR 660

Query: 693 FHHFKDGNCSCNDYW 707
           FHHF+DG CSC DYW
Sbjct: 661 FHHFRDGVCSCCDYW 675


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  867 bits (2239), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/673 (62%), Positives = 522/673 (77%), Gaps = 31/673 (4%)

Query: 66  SKLIEICAVSP-FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILS 124
           SKL+E C +SP F    YA+ VF TI+EPNQ+IWN ++RG++LSS PV A+K YV MI  
Sbjct: 1   SKLLEFCVLSPHFDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISL 60

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
           G +PN+YTFPF+LKSCAK  A  EG+QIH HVLKLG E D +VHTSLI+MYAQNG LE A
Sbjct: 61  GLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDA 120

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE------------------ 226
             VF++SS RD VSYTALITGYAS G +  A+++FDE+P+++                  
Sbjct: 121 HKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYK 180

Query: 227 -----------ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALI 275
                       N  P+E T+VTVLSACA   S+ELG  V S I+ HG GSNL + NALI
Sbjct: 181 EALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALI 240

Query: 276 DMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV 335
           D+YSKCG +  A  LFE +  +DV+SWN +IGGYTH + YKEAL+LF++ML+S   PNDV
Sbjct: 241 DLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDV 300

Query: 336 TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNV-SLWTSLIDMYAKCGNIKAAEQVFD 394
           T +S+LPACA+LGA+D+G+WIH YIDK  + + N  SL TSLIDMYAKCG+I+AA QVF+
Sbjct: 301 TIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFN 360

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
            M +K+L+SWNAMI G AMHG+A+    LFSRM   G++PDDITFVG+LSAC+H+G LD+
Sbjct: 361 SMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDL 420

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
           GR  F +M QDY I+PKL+HYGCM+DLLG +GLF EA+ ++KTM M+PD  IW SLL AC
Sbjct: 421 GRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKAC 480

Query: 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPG 574
           R HG LEL ES A++L+++EPENPG+YVLLSN+YA AG WD+VA +R  LN KGMKKVPG
Sbjct: 481 RRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPG 540

Query: 575 CSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEG 634
           CSSIE+ S VHEF+VGDK+HP+++ IY ML+E++ALLE++GFVPDTSEVL +M+EEWKEG
Sbjct: 541 CSSIEIDSEVHEFIVGDKLHPRNREIYGMLEEMEALLEEAGFVPDTSEVLQEMEEEWKEG 600

Query: 635 ALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFH 694
           AL HHSEKLAIA+GLISTKPGT + IVKNLRVC NCH ATKL+SKI+ REIIARDR RFH
Sbjct: 601 ALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLVSKIYKREIIARDRTRFH 660

Query: 695 HFKDGNCSCNDYW 707
           HF+DG CSCND+W
Sbjct: 661 HFRDGVCSCNDFW 673


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  866 bits (2238), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/670 (61%), Positives = 515/670 (76%), Gaps = 31/670 (4%)

Query: 69  IEICAVSP-FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV 127
           +E C +SP F  L YA+ VFETI+EPN +IWN + RGH+LS  PV A+K YV MI  G +
Sbjct: 1   LEFCILSPHFEGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLL 60

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           PN+YTFPF+LKSCAK+ A  EG QIH HVLKLG E D +VHTSLI+MY QN  LE A  V
Sbjct: 61  PNSYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKV 120

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE--------------------- 226
           F++SS RD VSYTAL+TGYASRGY++ AR +FDE+P+++                     
Sbjct: 121 FDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEAL 180

Query: 227 --------ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMY 278
                    N  P+EST+VTV+SA A  GS+ELG  V S I  HG GSNL + NALID Y
Sbjct: 181 ELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFY 240

Query: 279 SKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
           SKCG++  A  LF  +  +DVISWN++IGGYTH + YKEAL+LF++ML+S   PNDVT L
Sbjct: 241 SKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTML 300

Query: 339 SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS-LWTSLIDMYAKCGNIKAAEQVFDGMG 397
           S+L ACA+LGA+D+G+WIH YIDK  + + N S L TSLIDMY+KCG+I+AA QVF+ M 
Sbjct: 301 SILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSML 360

Query: 398 YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
           +K+L +WNAMI G AMHG+A+ A  +FSRM    ++PDDITFVG+LSAC+HAG+LD+GR 
Sbjct: 361 HKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRH 420

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
            F +M  +YKI+PKL+HYGCM+DLLG +GLF EAE ++ TM M+PD  IW SLL AC++H
Sbjct: 421 IFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMH 480

Query: 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577
           G +ELGE  A++L ++EP NPG+YVLLSN+YA AGRW++VA IR  LNDKGMKKVPGCSS
Sbjct: 481 GNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSS 540

Query: 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALS 637
           IE+ SVVHEF++GDK HP+++ IY ML+E++ LL+++GFVPDTSEVL +M+EE+KEGAL 
Sbjct: 541 IEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVLQEMEEEFKEGALR 600

Query: 638 HHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFK 697
           HHSEKLAIA+GLISTKP T + IVKNLRVC NCH ATKLISKI+ REIIARDR RFHHF+
Sbjct: 601 HHSEKLAIAFGLISTKPETKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFR 660

Query: 698 DGNCSCNDYW 707
           DG CSCNDYW
Sbjct: 661 DGVCSCNDYW 670


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  865 bits (2236), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/671 (63%), Positives = 522/671 (77%), Gaps = 31/671 (4%)

Query: 68  LIEICAVSP-FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGF 126
           LIE+C  SP F  L YA  VFETI+EPNQ+IWN +IRGH+LSS PV ++  YV M+  G 
Sbjct: 1   LIELCVPSPHFDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGL 60

Query: 127 VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARL 186
           +PN+YTFPF+LKSCAK    +EG+QIH  VLKLG + D +VHTSLI+MY QN  LE A  
Sbjct: 61  LPNSYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYK 120

Query: 187 VFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR--------------------- 225
           VF++SS RD VSYTALITGYASRG +  A++LFDE+P++                     
Sbjct: 121 VFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEA 180

Query: 226 ----EE----NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDM 277
               EE    N  P+EST VTVLSACAH GS+ELG  V S ++ HG  SNL + NALID+
Sbjct: 181 LELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDL 240

Query: 278 YSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTF 337
           YSKCG++  A  LF+ +  +DVISWN +IGGYTH + YKEAL+LF++ML+S   PNDVT 
Sbjct: 241 YSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTM 300

Query: 338 LSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS-LWTSLIDMYAKCGNIKAAEQVFDGM 396
           LSVLPACA+LGA+D+G+WIH YIDK  + + N S L TSLIDMYAKCG+I+AA QVF+ M
Sbjct: 301 LSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM 360

Query: 397 GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR 456
            +K+L+SWNAMI G AMHG+AD +  LFSRM   G++PDDITFVG+LSAC+H+G+LD+GR
Sbjct: 361 LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGR 420

Query: 457 QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRV 516
             F +M QDYK++PKL+HYGCM+DLLG +GLF EAE ++ TMEM+PD  IW SLL AC++
Sbjct: 421 HIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKM 480

Query: 517 HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCS 576
           HG +EL ES A++L+++EPENP +Y+LLSN+YA AGRW+DVA IR  LN K MKKVPGCS
Sbjct: 481 HGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCS 540

Query: 577 SIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGAL 636
           SIEV SVV EF+VGDK HPQ++ IY ML+E++ LLE++GFVPDTSEVL +M+EEWKEGAL
Sbjct: 541 SIEVDSVVFEFVVGDKFHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGAL 600

Query: 637 SHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHF 696
            HHSEKLAIA+GLISTKPGT + IVKNLRVC NCH ATKL+SKI+ REI+ARDR RFHHF
Sbjct: 601 RHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLLSKIYKREIVARDRTRFHHF 660

Query: 697 KDGNCSCNDYW 707
           +DG CSCNDYW
Sbjct: 661 RDGVCSCNDYW 671


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  863 bits (2229), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/692 (60%), Positives = 534/692 (77%), Gaps = 35/692 (5%)

Query: 45  NIKQVHSQIIKTGLHNTQFALSKLIEICAVSP-FGDLSYALLVFETIREPNQVIWNNIIR 103
           +++ +H+Q+IKTGLHNT +ALSKL+E C VSP F    YA+ VF+TI+EPN +IWN + R
Sbjct: 3   SVRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFR 62

Query: 104 GHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLES 163
           GH+LSS PV A+K Y+ MI  G +P++YTFPF+LKSCAK     EG+QIH HVLKLG + 
Sbjct: 63  GHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDL 122

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
           D +VHTSLI+MYAQNG LE AR VF+ SS RD VSYTALI GY SRGY++ A++LFDE+P
Sbjct: 123 DIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIP 182

Query: 224 IRE------------------------------ENFVPNESTVVTVLSACAHMGSLELGN 253
            ++                               N  P+EST+VTV+SACA   S+ELG 
Sbjct: 183 GKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGR 242

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTS 313
            V S I  HG  SNL + NALID+YSK G++  A +LF+ +  +DVISWN +IGGYTH +
Sbjct: 243 HVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMN 302

Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL--NNVS 371
            YKEAL+LF++ML+S   PNDVT LS+LPACA+LGA+D+G+WIH YI+K  + +  N  S
Sbjct: 303 LYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSS 362

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDG-MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE 430
           L TSLIDMYAKCG+I AA+QVFD  M  ++L++WNAMISG AMHG+A+ A  +FSRM   
Sbjct: 363 LQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMN 422

Query: 431 GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
           G++PDDITFVG+LSAC+H+G+LD+GR  F +M + Y+I+PKL+HYGCM+DLLG +GLF E
Sbjct: 423 GIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKE 482

Query: 491 AEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAG 550
           AE ++ TM M+PD  IW SLL AC++HG LELGES AK L+++EP N G+YVLLSN+YA 
Sbjct: 483 AEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAA 542

Query: 551 AGRWDDVATIRTRLNDKGM-KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDA 609
           AGRW++VA IR  LNDKGM KKVPGCSSIE+ SVVHEF++GDK+HPQ++ IY ML+E++ 
Sbjct: 543 AGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEV 602

Query: 610 LLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGN 669
           LLE++GFVPDTSEVL +M+EEW+EGAL HHSEKLAIA+GLISTKPGT + I+KNLRVC N
Sbjct: 603 LLEEAGFVPDTSEVLQEMEEEWREGALRHHSEKLAIAFGLISTKPGTKLTIMKNLRVCKN 662

Query: 670 CHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
           CH ATKLISKI+ REIIARDR RF HF+DG C
Sbjct: 663 CHEATKLISKIYKREIIARDRTRFXHFRDGVC 694



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 199/412 (48%), Gaps = 44/412 (10%)

Query: 147 SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELES---ARLVFNKSSLRDAVSYTALI 203
           S  + IHA ++K GL +  +  + L+     +   +    A  VF+     + + +  + 
Sbjct: 2   SSVRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMF 61

Query: 204 TGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG 263
            G+A       A +L+  + +     +P+  T   +L +CA     + G  +   +   G
Sbjct: 62  RGHALSSDPVSALKLY--LVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLG 119

Query: 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV------------------- 304
              +++V  +LI MY++ G L  AR +F+    RDV+S+                     
Sbjct: 120 FDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFD 179

Query: 305 ------------MIGGYTHTSDYKEALMLFRQ-MLQSNIEPNDVTFLSVLPACAYLGALD 351
                       MI GY  T +YKEAL LF++ M+ +N+ P++ T ++V+ ACA   +++
Sbjct: 180 EIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIE 239

Query: 352 LGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGL 411
           LG+ +H++I+ +H   +N+ +  +LID+Y+K G ++ A ++FDG+  K + SWN +I G 
Sbjct: 240 LGRHVHSWIN-DHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGY 298

Query: 412 AMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ---YFNAMIQDYKI 468
                  +AL LF  M+  G  P+D+T + +L AC H G +DIGR    Y N  ++    
Sbjct: 299 THMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVT 358

Query: 469 S-PKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
           +   LQ    ++D+  + G  D A+ +  +       + W +++    +HGR
Sbjct: 359 NVSSLQ--TSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGR 408



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 160/329 (48%), Gaps = 46/329 (13%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           + ++S C    +I   + VHS I   G  +    ++ LI++   S FG++  A  +F+ +
Sbjct: 226 VTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDL--YSKFGEVETACELFDGL 283

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
              + + WN +I G++  +    A+  +  M+ SG  PN  T   IL +CA + AI  G+
Sbjct: 284 WNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGR 343

Query: 151 QIHAHV---LKLGLESDPFVHTSLINMYAQNGELESARLVFNKS-SLRDAVSYTALITGY 206
            IH ++   LK  + +   + TSLI+MYA+ G++++A+ VF+ S S R   ++ A+I+G+
Sbjct: 344 WIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGF 403

Query: 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLG 265
           A  G  + A  +F  M  R     P++ T V +LSAC+H G L+LG N   S+  G+ + 
Sbjct: 404 AMHGRANAAFDIFSRM--RMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEIT 461

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
             L     +ID+                                 H+  +KEA  +   M
Sbjct: 462 PKLEHYGCMIDLLG-------------------------------HSGLFKEAEEMINTM 490

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGK 354
               +EP+ V + S+L AC   G L+LG+
Sbjct: 491 ---PMEPDGVIWCSLLKACKIHGNLELGE 516


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  856 bits (2211), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/672 (61%), Positives = 524/672 (77%), Gaps = 31/672 (4%)

Query: 67  KLIEICAVSP-FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG 125
           +LIE   +SP F  LSYA+ +FETI+EPN +IWN + RGH+L+S  V A+K YV MI  G
Sbjct: 1   QLIEFSVLSPHFDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLG 60

Query: 126 FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR 185
            +PN+Y+FPF+LKSCAK  A+ EG+QIH HVLKLG + D +V+TSLI+MYAQNG LE A 
Sbjct: 61  LLPNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAH 120

Query: 186 LVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE------------------- 226
            VF++SS R  VSYTALITGYASRGY+++AR+LFDE+ +++                   
Sbjct: 121 KVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKE 180

Query: 227 ----------ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALID 276
                      N  P+EST+VTV+SACA  GS+ELG  + S IE HG GSN+ + N LID
Sbjct: 181 ALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLID 240

Query: 277 MYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVT 336
           +YSKCG++  A  LF+ + K+DVISWN +IGG+TH + YKEAL+LF++ML+S   PNDVT
Sbjct: 241 LYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVT 300

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS-LWTSLIDMYAKCGNIKAAEQVFDG 395
            LSVLPACA+LGA+D+G+WIH YI+K  + + N S L TSLIDMYAKCG+I+AA+QVFD 
Sbjct: 301 MLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDS 360

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
           M  ++L+SWNAMI G AMHGKA+ A  LFS+M   G+ PDDITFVG+LSAC+H+G+LD+G
Sbjct: 361 MLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLG 420

Query: 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACR 515
           R  F +M QDYKI+PKL+HYGCM+DLLG  GLF EA+ +++TM M+PD  IW SLL AC+
Sbjct: 421 RHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACK 480

Query: 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGC 575
           +H  +ELGES A++L+++EPENPG+YVLLSN+YA AGRWD VA IRT LNDKG+KK PGC
Sbjct: 481 MHNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGC 540

Query: 576 SSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGA 635
           SSIE+ SVVHEF++GDK HP+++ IY ML+E++ L+E++GFVPDTSEVL +M+EEWKEGA
Sbjct: 541 SSIEIDSVVHEFIIGDKFHPRNREIYRMLEEMEMLMEETGFVPDTSEVLQEMEEEWKEGA 600

Query: 636 LSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHH 695
           L HHSEKLAIA+GLISTKPGT + IVKNLRVC NCH ATKLISKI+ REIIARDR R H 
Sbjct: 601 LRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRLHL 660

Query: 696 FKDGNCSCNDYW 707
            KDG  SC+DYW
Sbjct: 661 LKDGVWSCHDYW 672


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  853 bits (2203), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/664 (62%), Positives = 522/664 (78%), Gaps = 31/664 (4%)

Query: 43  MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSP-FGDLSYALLVFETIREPNQVIWNNI 101
           +Q+++ +H+Q+IKTGLHNT +ALSKLIE C +SP F  L YA+ VFETI+EPN +IWN +
Sbjct: 3   LQSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTM 62

Query: 102 IRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGL 161
            RGH+LSS PV A+K YV MI  G +PN+YTFPF+LKSCAK  A  EG+QIH HVLKLG 
Sbjct: 63  FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGC 122

Query: 162 ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDE 221
           + D +VHTSLI+MY QNG LE A  VF++S  RD VSYTALI GYASRGY+++A+++FDE
Sbjct: 123 DLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDE 182

Query: 222 MPIRE-----------------------------ENFVPNESTVVTVLSACAHMGSLELG 252
           +P+++                              N  P+EST+VTV+SACA  GS+ELG
Sbjct: 183 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 242

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
             V S I+ HG GSNL + NALID+YSKCG+L  A  LFE +  +DVISWN +IGGYTH 
Sbjct: 243 RQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHM 302

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS- 371
           + YKEAL+LF++ML+S   PNDVT LS+LPACA+LGA+D+G+WIH YIDK  + + N S 
Sbjct: 303 NLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASS 362

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
           L TSLIDMYAKCG+I+AA QVF+ + +K+L+SWNAMI G AMHG+AD +  +FSRM   G
Sbjct: 363 LRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNG 422

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
           ++PDDITFVG+LSAC+H+G+LD+GR  F +M QDYK++PKL+HYGCM+DLLG +GLF EA
Sbjct: 423 IEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEA 482

Query: 492 EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA 551
           E ++ TMEM+PD  IW SLL AC++HG +ELGES A++L+++EPENPG+YVLLSN+YA A
Sbjct: 483 EEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATA 542

Query: 552 GRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALL 611
           GRW++VA  R  LNDKGMKKVPGCSSIE+ SVVHEF++GDK HP+++ IY ML+E++ LL
Sbjct: 543 GRWNEVANTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLL 602

Query: 612 EKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCH 671
           E++GFVPDTSEVL +M+EEWKEGAL HHSEKLAIA+GLISTKPGT + IVKNLRVC NCH
Sbjct: 603 EEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCH 662

Query: 672 SATK 675
            A K
Sbjct: 663 EAYK 666


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  844 bits (2181), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/668 (62%), Positives = 516/668 (77%), Gaps = 35/668 (5%)

Query: 60  NTQFALSKLIEICAVSP-FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFY 118
           NT +A S+L+E C +SP F  L YA+ VFETI EPNQ+IWN + RGH+LSS PV A+K Y
Sbjct: 4   NTHYAXSQLLEFCILSPHFDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLY 63

Query: 119 VRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN 178
           V MI  G +PN +TFPF+LKSCAK     EG+QIH HVLKLG + D +VHTSLI+MYAQN
Sbjct: 64  VVMISLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQN 123

Query: 179 GELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE------------ 226
           G LE A+ VF++SS RD VSYTALITGYASRGY++ A+++FDE+PI++            
Sbjct: 124 GRLEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYA 183

Query: 227 -----------------ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
                             N  P+EST+ TV+SACA  GS+ELG  V S I  HG GSNL 
Sbjct: 184 ETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLK 243

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           + NALID+YSKCG++  A +L E +  +DVISWN +IGGYTH + YKEAL+LF++ML+S 
Sbjct: 244 IVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG 303

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL---NNVSLWTSLIDMYAKCGNI 386
             PNDVT LS+LPACA+LGA+D+G+WIH YIDK  + +   N  SL TSLIDMYAKCG+I
Sbjct: 304 ETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDI 363

Query: 387 KAAEQVFDGMGY-KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
            AA QV D   + ++L++WNAMI G AMHG+A+ A  +FSRM   G++PDDITFVG+LSA
Sbjct: 364 DAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSA 423

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           C+H+G+LD+GR  F +M QDY I+PKL+HYGCM+DLLG +GLF EAE ++ TM M+PD  
Sbjct: 424 CSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGV 483

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
           IW SLL AC++HG LELGES AK L+++EPENPG+YVLLSN+YA AG+W++V  IRT LN
Sbjct: 484 IWCSLLKACKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLN 543

Query: 566 DKGM-KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVL 624
           DKGM KKVPGCSSIE+ SVVHEF++GDK+HPQ++ IY ML+E++ LLE++GFVPDTSEVL
Sbjct: 544 DKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVL 603

Query: 625 YDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNRE 684
            +M+EEWKEGAL HHSEKLAIA+GLISTKPGT + IVKNLRVC NCH ATKLISKI+ RE
Sbjct: 604 QEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKRE 663

Query: 685 IIARDRNR 692
           IIARDR R
Sbjct: 664 IIARDRTR 671



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 158/333 (47%), Gaps = 55/333 (16%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
            ++S C    +I   +QVHS I   G  +    ++ LI++   S  G++  A  + E + 
Sbjct: 212 TVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDL--YSKCGEVETACELLEGLS 269

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             + + WN +I G++  +    A+  +  M+ SG  PN  T   IL +CA + AI  G+ 
Sbjct: 270 NKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRW 329

Query: 152 IHAHVLK----LGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVS-YTALITGY 206
           IH ++ K    + + +   + TSLI+MYA+ G++++A  V + S+   ++S + A+I G+
Sbjct: 330 IHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGF 389

Query: 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS 266
           A  G  + A  +F  M  R+    P++ T V +LSAC+H G L+LG              
Sbjct: 390 AMHGRANAAFDIFSRM--RKNGIEPDDITFVGLLSACSHSGMLDLG-------------- 433

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVIS-----WNVMIGGYTHTSDYKEALML 321
                                R++F S+ +   I+     +  MI    H+  +KEA  +
Sbjct: 434 ---------------------RNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEM 472

Query: 322 FRQMLQSNIEPNDVTFLSVLPACAYLGALDLGK 354
              M    +EP+ V + S+L AC   G L+LG+
Sbjct: 473 INTM---PMEPDGVIWCSLLKACKIHGNLELGE 502


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/689 (45%), Positives = 469/689 (68%), Gaps = 3/689 (0%)

Query: 19  PSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFG 78
           P++     L    P   +L +C  ++++ ++H+ +IKT L         L+E  A+    
Sbjct: 13  PTAKTSISLFPENPKTLILEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPT 72

Query: 79  DLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILK 138
            + YA+ +F  I EP+   +N +IRG +L  SP  AI  +  M  +   P+ +TFP ILK
Sbjct: 73  SMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILK 132

Query: 139 SCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVS 198
            C+++ A+SEG+QIHA ++K G  S  FV  +LI+MYA  GE+E AR VF++ S R+  +
Sbjct: 133 VCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRT 192

Query: 199 YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           + ++  GY   G  ++  +LF EM   +  F  +E T+V+VL+AC  +  LELG W+   
Sbjct: 193 WNSMFAGYTKSGNWEEVVKLFHEMLELDIRF--DEVTLVSVLTACGRLADLELGEWINRY 250

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
           +E  GL  N  +  +L+DMY+KCG +  AR LF+ +++RDV++W+ MI GY+  S  +EA
Sbjct: 251 VEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREA 310

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
           L LF +M ++NI+PN++T +S+L +CA LGAL+ GKW+H +I K   KL  V+L T+L+D
Sbjct: 311 LDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLT-VTLGTALMD 369

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
            YAKCG+++++ +VF  M  K + SW  +I GLA +G+  KAL  F  M+ + ++P+D+T
Sbjct: 370 FYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVT 429

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
           F+GVLSAC+HAGL+D GR  F +M +D+ I P+++HYGCMVD+LGRAGL +EA   +K M
Sbjct: 430 FIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNM 489

Query: 499 EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVA 558
            ++P+A IW +LL +C+VH  +E+GE   K L+ LEP + G Y+LLSN+YA  GRW+D  
Sbjct: 490 PIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDAL 549

Query: 559 TIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVP 618
            +R  + +KG+KK PGCS IE+  V+HEF   D VH QS+ IY  ++++   ++ +G+VP
Sbjct: 550 KVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGYVP 609

Query: 619 DTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLIS 678
           +T+E   D +E+ KE ++SHHSEKLAIA+GLI + PGTTIRI KNLRVC +CH+ATKL+S
Sbjct: 610 NTAEARLDAEEDDKESSVSHHSEKLAIAFGLIKSPPGTTIRITKNLRVCTDCHNATKLVS 669

Query: 679 KIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           K+FNREI+ RDR RFHHFK+G+CSCNDYW
Sbjct: 670 KVFNREIVVRDRTRFHHFKEGSCSCNDYW 698


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/733 (44%), Positives = 473/733 (64%), Gaps = 42/733 (5%)

Query: 6   SSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFAL 65
           S+ TLSP   H P         L   P L+L+  C +M  +KQ+HSQ I TGL +     
Sbjct: 3   SATTLSPPPTHLPS--------LPQTPPLSLIKTCKSMAQLKQIHSQTICTGLISNPIVP 54

Query: 66  SKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG 125
           +++I  C     GD+ YA +VF+T+  PN  +WNN+I+G+S    P  A+  Y  M+  G
Sbjct: 55  AQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERG 114

Query: 126 FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR 185
            +P+ YT+PF+LK   + +A+  G+++H H++KLG  S+ FV  +LI++Y+ +GE+  AR
Sbjct: 115 VMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVAR 174

Query: 186 LVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH 245
            VF++SS  D V++  +I+GY      D++ +LFDEM       +P+  T+V+VLSAC+ 
Sbjct: 175 GVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEM--ERMRVLPSSITLVSVLSACSK 232

Query: 246 MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL---------VKARDL------ 290
           +  L +G  V   ++   +     + NALIDMY+ CGD+         +K+RD+      
Sbjct: 233 LKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAI 292

Query: 291 ----------------FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
                           F+ + +RD +SW  MI GY   + +KE L LFR+M  +NI+P++
Sbjct: 293 VTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDE 352

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
            T +S+L ACA+LGAL+LG+WI AYIDKN  K+++  +  +LIDMY  CGN++ A ++F+
Sbjct: 353 FTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSF-VGNALIDMYFNCGNVEKAIRIFN 411

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
            M ++   SW A+I GLA++G  ++AL +FS+M+   + PD++T +GVL AC H+G++D 
Sbjct: 412 AMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDK 471

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
           G+++F  M   + I P + HYGCMVDLLGRAG   EA  ++K M +KP++ +W SLLGAC
Sbjct: 472 GKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGAC 531

Query: 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPG 574
           RVH   E+ E  A+ +LELEPEN   YVLL N+YA   RW+ +  +R  + D+G+KK PG
Sbjct: 532 RVHRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPG 591

Query: 575 CSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEG 634
           CS IE+   VHEF+ GD+VHPQSK IY  LDE+   L+ +G+ PDTSEV  D+ EE KE 
Sbjct: 592 CSLIEMNGSVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKES 651

Query: 635 ALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFH 694
           A+  HSEKLAIA+GLIS+ PG TIRIVKNLR+C +CH   KL+SK++NRE+I RDR RFH
Sbjct: 652 AVYRHSEKLAIAFGLISSGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFH 711

Query: 695 HFKDGNCSCNDYW 707
           HF+ G+CSC DYW
Sbjct: 712 HFRHGSCSCKDYW 724


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/680 (49%), Positives = 454/680 (66%), Gaps = 6/680 (0%)

Query: 28  LQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVF 87
           +Q  P L  L KCT M  +KQ+H+Q+++T L    F+ SK++  CA+   G L YA LVF
Sbjct: 38  IQLHPCLLSLEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVF 97

Query: 88  ETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAIS 147
             I  P     N+IIRG++  + P  AI FY  M+L G  P+ +TFP + KSC     + 
Sbjct: 98  NQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCG---VLC 154

Query: 148 EGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA 207
           EGKQ+H H  KLG  SD ++  +L+NMY+  G L SAR VF+K   +  VS+  +I  YA
Sbjct: 155 EGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYA 214

Query: 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
                 +A +LF  M I   +  PNE T+V VL+ACA    LE    V   I+  G+G +
Sbjct: 215 QWDLPHEAIKLFRRMEI--ASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFH 272

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
             +T+AL+D+Y KCG    ARDLF  + ++++  WN+MI G+   SDY+EAL LF +M  
Sbjct: 273 TVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQL 332

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
           S ++ + VT  S+L AC +LGAL+LGKW+H YI+K   +++ V+L T+L+DMYAKCG+I+
Sbjct: 333 SGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVD-VALGTALVDMYAKCGSIE 391

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
           +A +VF  M  K + +W A+I GLAM G+  KAL LF  M    ++PD ITFVGVL+AC+
Sbjct: 392 SAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACS 451

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
           HAGL++ G  YFN+M   Y I P ++HYGCMVD+LGRAG   EAE L++ M M PD  + 
Sbjct: 452 HAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVL 511

Query: 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
             LL ACR+HG L + E  A+ L+EL+P+N G YVLLSN+Y+    W+    +R  + ++
Sbjct: 512 VGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVER 571

Query: 568 GMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
            +KK PGCS+IEVG VVHEF+ GD  HPQS  IYE LD++   L+ +G+VPD SEVL+DM
Sbjct: 572 NIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDM 631

Query: 628 DEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIA 687
           DE+ KE  LS HSEKLAIA+GL+ST PGT IR+VKNLRVC +CHSA K IS+++NREII 
Sbjct: 632 DEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIV 691

Query: 688 RDRNRFHHFKDGNCSCNDYW 707
           RDRNRFHHF  G+CSC D+W
Sbjct: 692 RDRNRFHHFTKGSCSCRDFW 711


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/666 (49%), Positives = 452/666 (67%), Gaps = 7/666 (1%)

Query: 43  MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNII 102
           M  +KQ+H+Q+++TGL    F  SK++  C++   G L YA LVF  I  P     N+II
Sbjct: 1   MSQLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSII 60

Query: 103 RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE 162
           RG +  +    A+ FY  M++ G +P+ YTFP + KSC   S   EGKQIH H  KLG  
Sbjct: 61  RGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSS---EGKQIHCHSTKLGFA 117

Query: 163 SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
           SD +   +L+NMY+  G L SAR VF+K   +  VS+  +I  +A     ++A +LFD M
Sbjct: 118 SDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRM 177

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
            ++ EN  PNE T+V VL+ACA    L +   +   I+ HG G ++ +   L+D+Y KCG
Sbjct: 178 -MKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCG 236

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
            +  ARDLF+  +++++ SWN+MI G+   S+Y+EAL+LFR+M    I+ + VT  S+L 
Sbjct: 237 CVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLL 296

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLN-NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
           AC +LGAL+LGKW+HAYI K  Q+++ +V+L T+L+DMYAKCG+I+ A QVF  M  K +
Sbjct: 297 ACTHLGALELGKWLHAYIKK--QRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDV 354

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
            +W A+I GLAM G+A+ AL  F  M  +G++PD ITFVGVL+AC+HAG +D G  +FN+
Sbjct: 355 MTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNS 414

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
           M   Y I P ++HYG +VD+LGRAG   EAE L+K+M M PD  +   LLGACR+HG LE
Sbjct: 415 MSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLE 474

Query: 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
             E  AK LLE++P + G YVLLSN+Y  + +W++    R  + ++GM+K PGCS IEV 
Sbjct: 475 AAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVH 534

Query: 582 SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
            VVHEF+ GD  H QS  I EML+++ + L+ +G+VPD SEVL+DM EE KE  LS HSE
Sbjct: 535 GVVHEFVKGDSSHRQSSEINEMLEDMISKLKNAGYVPDKSEVLFDMAEEEKETELSLHSE 594

Query: 642 KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
           KLAIA+GL+ST  GT IR+VKNLR+C +CHSATKLISK++NREII RDRNRFHHFKDG C
Sbjct: 595 KLAIAFGLLSTSVGTPIRVVKNLRICSDCHSATKLISKLYNREIIVRDRNRFHHFKDGTC 654

Query: 702 SCNDYW 707
           SC  +W
Sbjct: 655 SCRGFW 660



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 187/363 (51%), Gaps = 5/363 (1%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           +L   C N    KQ+H    K G  +  +A + L+ +   S  G L  A  VF+ + +  
Sbjct: 93  SLFKSCRNSSEGKQIHCHSTKLGFASDTYAQNTLMNM--YSNCGCLVSARKVFDKMEDKT 150

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQIH 153
            V W  +I  H+    P  A++ + RM+ S  V PN  T   +L +CA+   ++  K+IH
Sbjct: 151 VVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIH 210

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
            ++ + G      ++T L+++Y + G ++ AR +F+K+  ++  S+  +I G+      +
Sbjct: 211 EYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYE 270

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           +A  LF EM  +      ++ T+ ++L AC H+G+LELG W+ + I+   +  ++ +  A
Sbjct: 271 EALLLFREMQTK--GIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTA 328

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           L+DMY+KCG +  A  +F  + ++DV++W  +I G       + AL  F +M    ++P+
Sbjct: 329 LVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPD 388

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
            +TF+ VL AC++ G +D G      +   +     +  +  L+D+  + G I  AE++ 
Sbjct: 389 AITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELI 448

Query: 394 DGM 396
             M
Sbjct: 449 KSM 451


>gi|255566945|ref|XP_002524455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536243|gb|EEF37895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 486

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/478 (66%), Positives = 376/478 (78%), Gaps = 29/478 (6%)

Query: 8   LTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSK 67
           + +SP+ L   P SDPPYK LQ  PSL LLS C N++ +KQ+HSQ+IKTGLHNT FALSK
Sbjct: 2   MIISPANLQILPFSDPPYKFLQTHPSLTLLSTCKNLKTLKQIHSQVIKTGLHNTHFALSK 61

Query: 68  LIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV 127
           LIE C +SP+GDLSYALL+F++I +PNQ+IWNNIIRG SLS SP++AI++YV MI SGF 
Sbjct: 62  LIEFCVISPYGDLSYALLLFKSIGKPNQIIWNNIIRGLSLSESPILAIQYYVDMISSGFT 121

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           PNTYT+PF+LKSCA+IS+  EGKQIH  +LKLG ++D FVHTSLI MY QNGEL +ARLV
Sbjct: 122 PNTYTYPFVLKSCARISSTHEGKQIHGQILKLGFDNDAFVHTSLITMYVQNGELGNARLV 181

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE--------------------- 226
           F +SS+RD VSYTALITGYASRG+LD A +LFDE+P+R+                     
Sbjct: 182 FERSSMRDVVSYTALITGYASRGFLDQALELFDEIPVRDVVSWNAMIAGYTQSGRFEEAL 241

Query: 227 --------ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMY 278
                    N  PN ST+++VLSACA  GSL++GNWV S IE HGL SN+ V NALIDMY
Sbjct: 242 IFFEEMLRANVTPNMSTLLSVLSACAQSGSLKMGNWVSSWIEEHGLESNIKVMNALIDMY 301

Query: 279 SKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
           +KCGDL  A  LFE I+ ++VISWNVMIGGYTH S YKEAL LFRQMLQSN+EPNDVT L
Sbjct: 302 AKCGDLENALHLFEGIKNKNVISWNVMIGGYTHLSCYKEALGLFRQMLQSNVEPNDVTLL 361

Query: 339 SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
           S+LPACA LGAL LGKWIHAYIDKN + L N +LWTSLIDMYAKCGNI+ A Q+FDGM  
Sbjct: 362 SILPACANLGALGLGKWIHAYIDKNMKNLANNALWTSLIDMYAKCGNIEVANQIFDGMNP 421

Query: 399 KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR 456
           K+LASWNAMISG AMHG+AD A+SLFSRM  EGL PD+ITF+GVLSACNHAGLLD+G 
Sbjct: 422 KSLASWNAMISGFAMHGQADLAISLFSRMTKEGLVPDNITFIGVLSACNHAGLLDLGH 479



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 130/437 (29%), Positives = 219/437 (50%), Gaps = 42/437 (9%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLIN--MYAQNGELESARLVFNKSSL 193
           +L +C  +  +   KQIH+ V+K GL +  F  + LI   + +  G+L  A L+F     
Sbjct: 30  LLSTCKNLKTL---KQIHSQVIKTGLHNTHFALSKLIEFCVISPYGDLSYALLLFKSIGK 86

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
            + + +  +I G +       A Q + +M      F PN  T   VL +CA + S   G 
Sbjct: 87  PNQIIWNNIIRGLSLSESPILAIQYYVDM--ISSGFTPNTYTYPFVLKSCARISSTHEGK 144

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR------------------------- 288
            +   I   G  ++  V  +LI MY + G+L  AR                         
Sbjct: 145 QIHGQILKLGFDNDAFVHTSLITMYVQNGELGNARLVFERSSMRDVVSYTALITGYASRG 204

Query: 289 ------DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
                 +LF+ I  RDV+SWN MI GYT +  ++EAL+ F +ML++N+ PN  T LSVL 
Sbjct: 205 FLDQALELFDEIPVRDVVSWNAMIAGYTQSGRFEEALIFFEEMLRANVTPNMSTLLSVLS 264

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           ACA  G+L +G W+ ++I++ H   +N+ +  +LIDMYAKCG+++ A  +F+G+  K + 
Sbjct: 265 ACAQSGSLKMGNWVSSWIEE-HGLESNIKVMNALIDMYAKCGDLENALHLFEGIKNKNVI 323

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           SWN MI G        +AL LF +M+   ++P+D+T + +L AC + G L +G+     +
Sbjct: 324 SWNVMIGGYTHLSCYKEALGLFRQMLQSNVEPNDVTLLSILPACANLGALGLGKWIHAYI 383

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
            ++ K       +  ++D+  + G  + A  +   M  K  A+ W +++    +HG+ +L
Sbjct: 384 DKNMKNLANNALWTSLIDMYAKCGNIEVANQIFDGMNPKSLAS-WNAMISGFAMHGQADL 442

Query: 523 GESVAKHLLE--LEPEN 537
             S+   + +  L P+N
Sbjct: 443 AISLFSRMTKEGLVPDN 459



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 180/346 (52%), Gaps = 34/346 (9%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIE-----------------------------ICAVSPF 77
           KQ+H QI+K G  N  F  + LI                              I   +  
Sbjct: 144 KQIHGQILKLGFDNDAFVHTSLITMYVQNGELGNARLVFERSSMRDVVSYTALITGYASR 203

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G L  AL +F+ I   + V WN +I G++ S     A+ F+  M+ +   PN  T   +L
Sbjct: 204 GFLDQALELFDEIPVRDVVSWNAMIAGYTQSGRFEEALIFFEEMLRANVTPNMSTLLSVL 263

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
            +CA+  ++  G  + + + + GLES+  V  +LI+MYA+ G+LE+A  +F     ++ +
Sbjct: 264 SACAQSGSLKMGNWVSSWIEEHGLESNIKVMNALIDMYAKCGDLENALHLFEGIKNKNVI 323

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           S+  +I GY       +A  LF +M   + N  PN+ T++++L ACA++G+L LG W+ +
Sbjct: 324 SWNVMIGGYTHLSCYKEALGLFRQM--LQSNVEPNDVTLLSILPACANLGALGLGKWIHA 381

Query: 258 LIEGH--GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
            I+ +   L +N   T +LIDMY+KCG++  A  +F+ +  + + SWN MI G+      
Sbjct: 382 YIDKNMKNLANNALWT-SLIDMYAKCGNIEVANQIFDGMNPKSLASWNAMISGFAMHGQA 440

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361
             A+ LF +M +  + P+++TF+ VL AC + G LDLG   H +ID
Sbjct: 441 DLAISLFSRMTKEGLVPDNITFIGVLSACNHAGLLDLGHINHFHID 486


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/739 (45%), Positives = 467/739 (63%), Gaps = 43/739 (5%)

Query: 9   TLSPSILHFPPSSDPPYKLLQNQ----PSLA--LLSKCTNMQNIKQVHSQIIKTGLHNTQ 62
           TL   +   P SS+P      N+    PS    L+ KC N +++KQ+H+ +++TGL    
Sbjct: 3   TLGNPLASVPISSNPTILTANNEQKSNPSTVPILIDKCANKKHLKQLHAHMLRTGLFFDP 62

Query: 63  FALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI 122
            + +KL   CA+S    L YA  VF+ I  PN   WN +IR  + S  P+  +  +++M+
Sbjct: 63  PSATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQML 122

Query: 123 -LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGEL 181
             S   PN+YTFPF++K+  ++S++  G+ IH  V+K    SD F+  SLI+ Y+  G+L
Sbjct: 123 HESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDL 182

Query: 182 ESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLS 241
           +SA LVF+K   +D VS+ ++I+G+   G  ++A QLF  M +  EN  PN  T+V VLS
Sbjct: 183 DSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKM--ENARPNRVTMVGVLS 240

Query: 242 ACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVIS 301
           ACA    LE G W C  IE +G+  NL ++NA++DMY KCG L  AR LF+ +E++D++S
Sbjct: 241 ACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVS 300

Query: 302 WNVMIGGYTHTSDY-------------------------------KEALMLFRQM-LQSN 329
           W  MI GY    DY                               KEAL +FR++ L  N
Sbjct: 301 WTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKN 360

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
            +PN+VT  S L ACA LGA+DLG WIH YI K   KLN   + TSLIDMY+KCG+++ A
Sbjct: 361 TKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLN-FHITTSLIDMYSKCGHLEKA 419

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
            +VF  +  + +  W+AMI+GLAMHG    A+ LFS+M    ++P+ +TF  +L AC+H+
Sbjct: 420 LEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHS 479

Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
           GL+D GR +FN M   Y + P  +HY CMVD+LGRAG  +EA  L++ M + P A++W +
Sbjct: 480 GLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGA 539

Query: 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
           LLGACR++G +EL E     LLE +  N GAYVLLSN+YA AG+WD V+ +R  +   G+
Sbjct: 540 LLGACRIYGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGL 599

Query: 570 KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE 629
           +K PGCSSIEV  ++HEFLVGD  HP S  IY  LDEI A ++ +G+V D S +L  ++E
Sbjct: 600 EKEPGCSSIEVNGIIHEFLVGDNSHPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEE 659

Query: 630 EW-KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIAR 688
           E+ KE AL+ HSEKLAIAYGLI  +P   IRIVKNLRVCG+CHS  KLISK++NR+I+ R
Sbjct: 660 EYMKEHALNLHSEKLAIAYGLIRMEPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLR 719

Query: 689 DRNRFHHFKDGNCSCNDYW 707
           DR RFHHF  GNCSC DYW
Sbjct: 720 DRYRFHHFSGGNCSCMDYW 738


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/747 (45%), Positives = 472/747 (63%), Gaps = 44/747 (5%)

Query: 1   MALPPSSLTLSPSILHFPPSSDPPY------KLLQNQPSLALLSKCTNMQNIKQVHSQII 54
           MA+P   L   P   H  P+ +P        +   N P+L+L+ +C+  + +KQ+H+Q++
Sbjct: 1   MAIPNPCLVSLPRS-HSLPTPNPNSITLNNDRYFANHPTLSLIDQCSETKQLKQIHAQML 59

Query: 55  KTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVA 114
           +TGL    F+ S+LI   A+SPF  L YA  VF+ I  PN   WN +IR ++ SS+P  +
Sbjct: 60  RTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQS 119

Query: 115 IKFYVRMI-LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLIN 173
           +  ++RM+  S   P+ +TFPF++K+ +++  +  GK  H  V+K+ L SD F+  SLI+
Sbjct: 120 LLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIH 179

Query: 174 MYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
            YA+ GEL     VF     RD VS+ ++IT +   G  ++A +LF EM    +N  PN 
Sbjct: 180 FYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEM--ETQNVKPNG 237

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
            T+V VLSACA     E G WV S IE + +G +L ++NA++DMY+KCG +  A+ LF+ 
Sbjct: 238 ITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDK 297

Query: 294 IEKRDVISWNVMIGGYTHTSDY-------------------------------KEALMLF 322
           + ++D++SW  M+ GY    +Y                               KEAL LF
Sbjct: 298 MPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELF 357

Query: 323 RQM-LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381
            ++ L    +P++VT +S L ACA LGA+DLG WIH YI K   KLN   L TSLIDMY 
Sbjct: 358 HELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLN-CHLTTSLIDMYC 416

Query: 382 KCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVG 441
           KCG+++ A  VF  +  K +  W+AMI+GLAMHG    A++LFS+M  + ++P+ +TF  
Sbjct: 417 KCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTN 476

Query: 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK 501
           +L AC+H GL++ GR +FN M   Y + P ++HY CMVD+LGRAGL +EA  L++ M M 
Sbjct: 477 ILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMA 536

Query: 502 PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIR 561
           P A++W +LLGAC +H  + L E     L+ELEP N GAYVLLSN+YA AG+WD V+ +R
Sbjct: 537 PAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLR 596

Query: 562 TRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTS 621
             + D G+KK PGCSSIEV  +VHEFLVGD  HP +K IY  LDEI A LE  G+VP+ S
Sbjct: 597 KLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKS 656

Query: 622 EVLYDMDEE-WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKI 680
            +L  ++EE  KE AL  HSEKLAIA+GLIST     IRIVKNLRVCG+CHS  KL+SK+
Sbjct: 657 HLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKL 716

Query: 681 FNREIIARDRNRFHHFKDGNCSCNDYW 707
           ++REI+ RDR RFHHF++G+CSC DYW
Sbjct: 717 YDREILLRDRYRFHHFREGHCSCMDYW 743


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/719 (43%), Positives = 451/719 (62%), Gaps = 39/719 (5%)

Query: 20  SSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGD 79
           S  PP       P ++LL  C +M  ++QVH Q IK GL+      ++++  C    +GD
Sbjct: 13  SFSPP-----THPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGD 67

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKS 139
             YA  +F+ I EPN  IWN +IRG+S    P + +  Y+ M+  G  P+ YTFPF+ K 
Sbjct: 68  FQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKG 127

Query: 140 CAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSY 199
             +  A+  G+Q+H HVLK GL+ + FVHT+L+ MY   G+L++AR VF+     D +++
Sbjct: 128 FTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITW 187

Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
             +I+ Y   G  +++R+LF  + + ++  +P   T+V VLSAC+ +  L  G  V S +
Sbjct: 188 NMIISAYNKVGKFEESRRLF--LVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYV 245

Query: 260 EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV--------------- 304
           +   + SNL + NA+IDMY+ CG++  A  +F S+  RD+ISW                 
Sbjct: 246 KNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVAR 305

Query: 305 ----------------MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
                           MI GY  ++ +KEAL LFR M  +N++P++ T +SVL ACA+LG
Sbjct: 306 NYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLG 365

Query: 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI 408
           AL+LG+WI  YID+N  K N++ +  +LIDMY KCG++  AE +F  M  +   +W AMI
Sbjct: 366 ALELGEWIRTYIDRNKIK-NDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMI 424

Query: 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
            GLA++G  +KAL +FS M+   + PD+IT++GVLSAC H GL+D GR+YF  M   + I
Sbjct: 425 VGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGI 484

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
            P + HYGC+VDLL RAG   EA  +++ M +K ++ +W +LL  CRV+   ++ E V K
Sbjct: 485 EPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVK 544

Query: 529 HLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFL 588
            +LELEP+N   YVLL N+YA   RW+D+  +R  + DKG+KK PGCS IE+   VHEF+
Sbjct: 545 QILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFV 604

Query: 589 VGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYG 648
            GD+ HPQ+K+I   LD++   L+ +G+ PD SEV  D+ EE KE ++  HSEKLAIA+G
Sbjct: 605 AGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFG 664

Query: 649 LISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           LI++ PG TIRI KNLR+C +CH+  KL+SK++NRE+I RDR RFHHFK G CSC DYW
Sbjct: 665 LINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 723


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/734 (42%), Positives = 455/734 (61%), Gaps = 39/734 (5%)

Query: 5   PSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFA 64
           P  +T   +      S  PP       P ++LL  C +M  ++QVH Q IK GL+     
Sbjct: 19  PKQMTTIAATSSALKSFSPP-----THPLISLLETCESMDQLQQVHCQAIKKGLNANPVL 73

Query: 65  LSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILS 124
            ++++  C    +GD  YA  +F+ I EPN  IWN +IRG+S    P + +  Y+ M+  
Sbjct: 74  QNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRR 133

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
           G  P+ YTFPF+ K   +  A+  G+Q+H HVLK GL+ + FVHT+L+ MY   G+L++A
Sbjct: 134 GVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTA 193

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
           R VF+     D +++  +I+ Y   G  +++R+LF  + + ++  +P   T+V VLSAC+
Sbjct: 194 RGVFDVCPKADVITWNMIISAYNKVGKFEESRRLF--LVMEDKQVLPTTVTLVLVLSACS 251

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
            +  L  G  V S ++   + SNL + NA+IDMY+ CG++  A  +F S+  RD+ISW  
Sbjct: 252 KLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTT 311

Query: 305 -------------------------------MIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
                                          MI GY  ++ +KEAL LFR M  +N++P+
Sbjct: 312 IVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPD 371

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
           + T +SVL ACA+LGAL+LG+WI  YID+N  K N++ +  +LIDMY KCG++  AE +F
Sbjct: 372 EFTMVSVLTACAHLGALELGEWIRTYIDRNKIK-NDLFVRNALIDMYFKCGDVDKAESIF 430

Query: 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLD 453
             M  +   +W AMI GLA++G  +KAL +FS M+   + PD+IT++GVLSAC H GL+D
Sbjct: 431 REMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVD 490

Query: 454 IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
            GR+YF  M   + I P + HYGC+VDLL RAG   EA  +++ M +K ++ +W +LL  
Sbjct: 491 KGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAG 550

Query: 514 CRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVP 573
           CRV+   ++ E V K +LELEP+N   YVLL N+YA   RW+D+  +R  + DKG+KK P
Sbjct: 551 CRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXP 610

Query: 574 GCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKE 633
           GCS IE+   VHEF+ GD+ HPQ+K+I   LD++   L+ +G+ PD SEV  D+ EE KE
Sbjct: 611 GCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKE 670

Query: 634 GALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRF 693
            ++  HSEKLAIA+GLI++ PG TIRI KNLR+C +CH+  KL+SK++NRE+I RDR RF
Sbjct: 671 NSVFRHSEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRF 730

Query: 694 HHFKDGNCSCNDYW 707
           HHFK G CSC DYW
Sbjct: 731 HHFKHGLCSCKDYW 744


>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
          Length = 526

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/525 (58%), Positives = 395/525 (75%), Gaps = 31/525 (5%)

Query: 45  NIKQVHSQIIKTGLHNTQFALSKLIEICAVSP-FGDLSYALLVFETIREPNQVIWNNIIR 103
           +++ +H+Q+IKTGLHNT +ALSKLIE C +SP F  L YA+ VFETI+EPN +IWN + R
Sbjct: 2   SLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFR 61

Query: 104 GHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLES 163
           GH+LSS PV A+  YV MI  G +PN YTFPF+LKSCAK  A  EG+QIH HVLKLG + 
Sbjct: 62  GHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDL 121

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
           D +VHTSLI+MY QNG LE AR VF++SS RD VSYTALI GYASRGY+++A++LFDE+P
Sbjct: 122 DLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIKGYASRGYIENAQKLFDEIP 181

Query: 224 IRE-----------------------------ENFVPNESTVVTVLSACAHMGSLELGNW 254
           +++                              N  P+EST+VTV+SACA  GS+ELG  
Sbjct: 182 VKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQ 241

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           V   I+ HG GSNL + NALID+YSKCG++  A  LFE +  +DVISWN +IGGYTH + 
Sbjct: 242 VHLWIDDHGFGSNLKIVNALIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNL 301

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS-LW 373
           YKEAL+LF++ML+S   PNDVT LS+LPACA+LGA+D+G+WIH YI+K  + + N S L 
Sbjct: 302 YKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSLL 361

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
           TSLIDMYAKCG+I+AA+QVFD M  ++L+SWNAMI G AMHGKA+ A  LFS+M   G+ 
Sbjct: 362 TSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGID 421

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
           PDDITFVG+LSAC+H+G+LD+GR  F +M QDYKI+PKL+HYGCM+DLLG  GLF EA+ 
Sbjct: 422 PDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKE 481

Query: 494 LLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
           +++TM M+PD  IW SLL AC++H  +ELGES A++L+++EPE P
Sbjct: 482 MIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPETP 526


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  632 bits (1630), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 311/653 (47%), Positives = 435/653 (66%), Gaps = 5/653 (0%)

Query: 55  KTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVA 114
           + GL +  + L+ ++  C+   F D +Y   +F  I++PN  +WN +IRG   +     A
Sbjct: 39  RFGLCHDNYLLNMILR-CSFD-FSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDA 96

Query: 115 IKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINM 174
           I+FY  M   GF+PN +TFPF+LK+CA++  +  G +IH  V+K G + D FV TSL+ +
Sbjct: 97  IEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCL 156

Query: 175 YAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNES 234
           YA+ G LE A  VF+    ++ VS+TA+I+GY   G   +A  +F  +   E N  P+  
Sbjct: 157 YAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRL--LEMNLAPDSF 214

Query: 235 TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
           T+V VLSAC  +G L  G W+   I   G+  N+ V  +L+DMY+KCG++ KAR +F+ +
Sbjct: 215 TIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGM 274

Query: 295 EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGK 354
            ++D++SW  MI GY      KEA+ LF QM + N++P+  T + VL ACA LGAL+LG+
Sbjct: 275 PEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGE 334

Query: 355 WIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMH 414
           W+   +D+N + L N  L T+LID+YAKCG++  A +VF GM  K    WNA+ISGLAM+
Sbjct: 335 WVSGLVDRN-EFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMN 393

Query: 415 GKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQH 474
           G    +  LF ++   G++PD  TF+G+L  C HAGL+D GR+YFN+M + + ++P ++H
Sbjct: 394 GYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEH 453

Query: 475 YGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534
           YGCMVDLLGRAGL DEA  L++ M M+ +A +W +LLGACR+H   +L E   K L+ELE
Sbjct: 454 YGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELE 513

Query: 535 PENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVH 594
           P N G YVLLSN+Y+   +WD+ A +R  +N+K ++K PGCS IEV  +VHEFLVGDK H
Sbjct: 514 PWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYH 573

Query: 595 PQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKP 654
           P S+ IY  LDE+   ++ +G+VP T  VL+D++EE KE  L  HSEKLAIA+GLIS  P
Sbjct: 574 PLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFLGCHSEKLAIAFGLISATP 633

Query: 655 GTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
              IR+VKNLRVCG+CH A KLIS I  REI  RD NRFH F++G+CSCNDYW
Sbjct: 634 TAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDYW 686


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 309/705 (43%), Positives = 447/705 (63%), Gaps = 17/705 (2%)

Query: 3   LPPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQ 62
           LP  SLT   SI  FP +           P   +L +C   ++++QVH+ ++KT      
Sbjct: 8   LPNISLT---SITQFPEN-----------PKSLILQQCKTPKDLQQVHAHLLKTRRLLDP 53

Query: 63  FALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI 122
                ++E  A+     + YAL +F  I +P    +N +IRG +   SP  A+  + +M 
Sbjct: 54  IITEAVLESAALLLPDTIDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMH 113

Query: 123 LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELE 182
                 + +TF  +LK+C+++ A+ EG+Q+HA +LK G +S+ FV  +LI MYA  G++ 
Sbjct: 114 EKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIG 173

Query: 183 SARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSA 242
            AR VF+    R  V++ ++++GY   G  D+  +LF +  I E     ++ T+++VL A
Sbjct: 174 VARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRK--ILELRIEFDDVTMISVLMA 231

Query: 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
           C  + +LE+G  +   I   GL  N  +T +LIDMY+KCG +  AR LF+ ++KRDV++W
Sbjct: 232 CGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAW 291

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
           + MI GY      KEAL LF +M + N+ PN+VT +SVL +CA LGA + GKW+H YI K
Sbjct: 292 SAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKK 351

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALS 422
              KL  V+L T LID YAKCG I  + +VF  M +K + +W A+I GLA +G+   AL 
Sbjct: 352 KKMKLT-VTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALE 410

Query: 423 LFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482
            FS M+   ++P+D+TF+GVLSAC+HA L+D GR  FN+M +D+ I P+++HYGCMVD+L
Sbjct: 411 FFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDIL 470

Query: 483 GRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV 542
           GRAG  +EA   +  M   P+A +W +LL +CR H  +E+ E   +H+  LEP + G Y+
Sbjct: 471 GRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYI 530

Query: 543 LLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYE 602
           LLSN YA  GR +D   +R+ + +K +KK+PGCS IE+  VVHEF   D  H  SK I++
Sbjct: 531 LLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHD 590

Query: 603 MLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVK 662
            LD++   +++ G+VP+T +   + +EE KE ++SHHSEKLAIAYGLI T P TTIRI K
Sbjct: 591 ALDKMMKQIKRLGYVPNTDDARLEAEEESKETSVSHHSEKLAIAYGLIRTSPRTTIRISK 650

Query: 663 NLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           NLR+C +CH+ATK IS++F R II RDRNRFHHFKDG CSCNDYW
Sbjct: 651 NLRMCRDCHNATKFISQVFERMIIVRDRNRFHHFKDGLCSCNDYW 695


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 305/674 (45%), Positives = 453/674 (67%), Gaps = 5/674 (0%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGL-HNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           L + CT++   KQ H+ +++T L HN  F+ SKLI   A+S  GDL+YA  +F  ++ P+
Sbjct: 17  LKTHCTSISKTKQAHALLLRTHLLHNPLFS-SKLISFLALSHSGDLNYARKLFTQMQNPD 75

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
             I N +IRG++ S +P  A+  Y  M+  G   + YT+PF+L +CA++ A+  G++ H 
Sbjct: 76  PFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHC 135

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
            VLK G  SD FV  +LI  Y   G    A  VF++S++RD V++  +I  + ++G  + 
Sbjct: 136 EVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEK 195

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274
           A  L DEM  + +N  P+E T+V+++ ACA +G+LE G ++ S  +  GL  NL V NA+
Sbjct: 196 AFDLLDEMT-KLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAI 254

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
           +DMY KC D+  A+++F  I ++DV+SW  M+ G   +  ++EAL LF++M  + IE ++
Sbjct: 255 LDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDE 314

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           +T + VL ACA  GALD GK+IH  IDK     + V L T+L+DMYAKCG+I  A QVF 
Sbjct: 315 ITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLV-LETALVDMYAKCGSIDLALQVFR 373

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
            M  + + +WNA+I GLAMHG  + A+SLF +M  + L PDD+TF+ +L AC+HAGL+D 
Sbjct: 374 RMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDE 433

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
           G   F AM   ++I P+++HYGC+VDLL RA   D+A A ++ M +K ++ +W +LLGAC
Sbjct: 434 GLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGAC 493

Query: 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPG 574
           R  G  +L E + + ++ELEP++ G YV+LSN+YAG  +WD    +R ++ +KG++K PG
Sbjct: 494 RSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPG 553

Query: 575 CSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE-KSGFVPDTSEVLYDMDEEWKE 633
           CS IE+  ++H+F+ GD+ H Q++ IY M++E+   +    G VP T+ VL+D++EE KE
Sbjct: 554 CSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKE 613

Query: 634 GALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRF 693
            +L  HSEKLAIA GLIST  G+ IRIVKNLRVC +CHS  K+ SK++NREI+ARDR+RF
Sbjct: 614 HSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRF 673

Query: 694 HHFKDGNCSCNDYW 707
           HHFK+G+CSC D+W
Sbjct: 674 HHFKEGSCSCMDFW 687


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 308/680 (45%), Positives = 438/680 (64%), Gaps = 14/680 (2%)

Query: 34  LALLSKC---TNMQNIKQVHSQIIKTGLHNTQF---ALSKLIEICAVSPFGDLSYALLVF 87
           L+++  C   +++Q  ++VH  II  G  +      AL+ +   C     G L  A  VF
Sbjct: 124 LSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKC-----GSLENARQVF 178

Query: 88  ETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAIS 147
           + + + + V WN II G+S +  P  A+  +  M ++G  PN+ T   ++  CA + A+ 
Sbjct: 179 DRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALE 238

Query: 148 EGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA 207
           +GKQIH + ++ G+ESD  V   L+NMYA+ G + +A  +F +  +RD  S+ A+I GY+
Sbjct: 239 QGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYS 298

Query: 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
                 +A   F+ M +R     PN  T+V+VL ACAH+ +LE G  +       G  SN
Sbjct: 299 LNSQHHEALAFFNRMQVR--GIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESN 356

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
             V NAL++MY+KCG++  A  LFE + K++V++WN +I GY+      EAL LF +M  
Sbjct: 357 DVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQA 416

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
             I+P+    +SVLPACA+  AL+ GK IH Y  ++  + +NV + T L+D+YAKCGN+ 
Sbjct: 417 QGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFE-SNVVVGTGLVDIYAKCGNVN 475

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
            A+++F+ M  + + SW  MI    +HG  + AL+LFS+M   G + D I F  +L+AC+
Sbjct: 476 TAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACS 535

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
           HAGL+D G QYF  M  DY ++PKL+HY C+VDLLGRAG  DEA  ++K M ++PDA +W
Sbjct: 536 HAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVW 595

Query: 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
            +LLGACR+H  +ELGE  AKHL EL+P+N G YVLLSN+YA A RW+DVA +R  + +K
Sbjct: 596 GALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEK 655

Query: 568 GMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
           G+KK PGCS + V   V  FLVGD+ HPQS+ IY ML+ +   + K+G+VP+T+  L D+
Sbjct: 656 GVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLALQDV 715

Query: 628 DEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIA 687
           +EE KE  LS HSEKLAI++G+I+T PG  IRI+KNLRVC +CH+ATK ISKI  REII 
Sbjct: 716 EEEAKENILSSHSEKLAISFGIINTSPGIPIRIMKNLRVCSDCHNATKFISKIVGREIIV 775

Query: 688 RDRNRFHHFKDGNCSCNDYW 707
           RD NRFHH K+G CSC DYW
Sbjct: 776 RDANRFHHVKNGFCSCGDYW 795



 Score =  297 bits (760), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 161/428 (37%), Positives = 251/428 (58%), Gaps = 5/428 (1%)

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           N V+W   I G+  +     A++ Y +M  +G  P+   F  ++K+C   S +  G+++H
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
             ++  G ESD  V T+L +MY + G LE+AR VF++   RD VS+ A+I GY+  G   
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPY 203

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           +A  LF EM +      PN ST+V+V+  CAH+ +LE G  +       G+ S++ V N 
Sbjct: 204 EALALFSEMQV--NGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNG 261

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           L++MY+KCG++  A  LFE +  RDV SWN +IGGY+  S + EAL  F +M    I+PN
Sbjct: 262 LVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPN 321

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
            +T +SVLPACA+L AL+ G+ IH Y  ++  + N+V +  +L++MYAKCGN+ +A ++F
Sbjct: 322 SITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDV-VGNALVNMYAKCGNVNSAYKLF 380

Query: 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLD 453
           + M  K + +WNA+ISG + HG   +AL+LF  M  +G++PD    V VL AC H   L+
Sbjct: 381 ERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALE 440

Query: 454 IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
            G+Q     I+    S  +   G +VD+  + G  + A+ L + M  + D   WT+++ A
Sbjct: 441 QGKQIHGYTIRSGFESNVVVGTG-LVDIYAKCGNVNTAQKLFERMP-EQDVVSWTTMILA 498

Query: 514 CRVHGRLE 521
             +HG  E
Sbjct: 499 YGIHGHGE 506



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 115/336 (34%), Positives = 186/336 (55%), Gaps = 14/336 (4%)

Query: 188 FNKSSLRD-AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHM 246
           F ++ +R+ AV +   I GY   G+ + A +L+ +M  +     P++   ++V+ AC   
Sbjct: 76  FTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQM--QRTGINPDKLVFLSVIKACGSQ 133

Query: 247 GSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMI 306
             L+ G  V   I   G  S++ V  AL  MY+KCG L  AR +F+ + KRDV+SWN +I
Sbjct: 134 SDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAII 193

Query: 307 GGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK 366
            GY+      EAL LF +M  + I+PN  T +SV+P CA+L AL+ GK IH Y  ++  +
Sbjct: 194 AGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIE 253

Query: 367 LNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSR 426
            ++V +   L++MYAKCGN+  A ++F+ M  + +ASWNA+I G +++ +  +AL+ F+R
Sbjct: 254 -SDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNR 312

Query: 427 MIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY----GCMVDLL 482
           M   G++P+ IT V VL AC H   L+ G+Q     I  Y I    +        +V++ 
Sbjct: 313 MQVRGIKPNSITMVSVLPACAHLFALEQGQQ-----IHGYAIRSGFESNDVVGNALVNMY 367

Query: 483 GRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
            + G  + A  L + M  K +   W +++     HG
Sbjct: 368 AKCGNVNSAYKLFERMP-KKNVVAWNAIISGYSQHG 402


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 322/731 (44%), Positives = 452/731 (61%), Gaps = 42/731 (5%)

Query: 14  ILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICA 73
           + H  P+  P      N    AL  +CT+ + +KQ+H+Q+++T   +  +A S+L    A
Sbjct: 125 VQHSSPT--PASATATNVGDRALFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAA 182

Query: 74  VSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMIL-SGFVPNTYT 132
            S F  L YA  VF+ I +PN   WN +IR  + SS P+ ++  ++RM+  S F PN +T
Sbjct: 183 FSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFT 242

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN--K 190
           FP ++K+ A+      GK +H   +K     D FV  SLI+ YA  G L+ A LVF   +
Sbjct: 243 FPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIE 302

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250
            + +D VS+ +++TG+   GY D A  LF+ M  R E   PN  T+V+V+SACA   +L 
Sbjct: 303 GNNKDIVSWNSMVTGFVQGGYPDKALDLFERM--RNEGVHPNAVTMVSVMSACAKTMNLT 360

Query: 251 LGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW-------- 302
           LG  VC  I+ + +  NL+V NA IDM+ KCG++  AR LF+++EKRDV+SW        
Sbjct: 361 LGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYA 420

Query: 303 -----------------------NVMIGGYTHTSDYKEALMLFR--QMLQSNIEPNDVTF 337
                                  NV+I GY  +   KEAL +FR  Q+ +S   P+ VT 
Sbjct: 421 KMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTL 480

Query: 338 LSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG 397
           LS L ACA LGA+D+G+WIH YI K   +LN  +L TSLIDMY+K G+++ A +VF  +G
Sbjct: 481 LSTLSACAQLGAMDIGEWIHGYIKKERIQLNR-NLATSLIDMYSKSGDVEKAIEVFHSIG 539

Query: 398 YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
            K +  W+AMI+GLAMHG+ + A+ LF  M    ++P+ +TF  +L AC+H+GL+D G++
Sbjct: 540 NKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKR 599

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
            F+ M + Y + PK +HY CMVD+LGRAG  +EA   ++ M + P A++W +LLGAC +H
Sbjct: 600 LFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIH 659

Query: 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577
           G LEL E     LLE+EP N GAYVLLSN+YA  G W+ V+ +R ++ D G+KK  GCSS
Sbjct: 660 GNLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSS 719

Query: 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVL-YDMDEEWKEGAL 636
           IE+   VHEF+VGD  HP S+ IY  LDEI A L   G+V +T  +L +  +EE KE AL
Sbjct: 720 IEIDGTVHEFIVGDNAHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKAL 779

Query: 637 SHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHF 696
             HSEK+AIA+GLI       IRIVKNLRVC +CH+  K++SK++ R+I+ RDR RFHHF
Sbjct: 780 KLHSEKMAIAFGLIRADSQQAIRIVKNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHHF 839

Query: 697 KDGNCSCNDYW 707
             G+CSC DYW
Sbjct: 840 SGGHCSCQDYW 850


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  619 bits (1597), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 306/743 (41%), Positives = 470/743 (63%), Gaps = 39/743 (5%)

Query: 1   MALPPSSLTLS-PSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLH 59
           MA+  ++  LS P   +F   + P     +++ +++L+ +C++++ +KQ H+ +I+TG+ 
Sbjct: 1   MAIFSTAQPLSLPRHPNFSNPNQPTTNNERSRHTISLIDRCSSLRQLKQTHAHMIRTGMF 60

Query: 60  NTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYV 119
           +  ++ SKL  I A+S F  L YA  VF+ I +PN   WN +IR ++    PV +I  ++
Sbjct: 61  SDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFL 120

Query: 120 RMILS--GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ 177
            M+ S     PN YTFPF++K+ A++S++S G+ +H   +K  + SD FV  SLI+ Y  
Sbjct: 121 DMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFS 180

Query: 178 NGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVV 237
            G+L+SA  VF     +D VS+ ++I G+  +G  D A +LF +M    E+   +  T+V
Sbjct: 181 CGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKM--ESEDVKASHVTMV 238

Query: 238 TVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR 297
            VLSACA +  LE G  VCS IE + +  NL + NA++DMY+KCG +  A+ LF+++E++
Sbjct: 239 GVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEK 298

Query: 298 DVISWNVMIGGYTHTSDYK-------------------------------EALMLFRQM- 325
           D ++W  M+ GY  + DY+                               EAL++F ++ 
Sbjct: 299 DNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQ 358

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
           LQ NI+ N +T +S L ACA +GAL+LG+WIH+YI KN  K+ N  + ++LI MY+KCG+
Sbjct: 359 LQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKM-NFYVTSALIHMYSKCGD 417

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           ++ A +VF+ +  + +  W+AMI GLAMHG   +A+ +F +M    ++P+ +TF  V  A
Sbjct: 418 LEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCA 477

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           C+H GL+D     F  M   Y I P+ +HY C+VD+LGR+G  ++A   ++ M + P  +
Sbjct: 478 CSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTS 537

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
           +W +LLGAC++H  L L E     LLELEP N GA+VLLSN+YA +G+WD+V+ +R  + 
Sbjct: 538 VWGALLGACKIHANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMR 597

Query: 566 DKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLY 625
             G+KK PGCSSIE+  ++HEFL GD  HP S+ +Y  L E+   L+ +G+ P+ S VL 
Sbjct: 598 VTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQ 657

Query: 626 DM-DEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNRE 684
            + +EE KE +L+ HSEKLAI YGLIST+    IR++KNLR+CG+CH+  KLIS+++NRE
Sbjct: 658 IIEEEEMKEQSLNLHSEKLAICYGLISTEAPKAIRVIKNLRMCGDCHAVAKLISQLYNRE 717

Query: 685 IIARDRNRFHHFKDGNCSCNDYW 707
           II RDR RFHHF++G CSCND+W
Sbjct: 718 IIVRDRYRFHHFRNGQCSCNDFW 740


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  619 bits (1597), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 323/716 (45%), Positives = 456/716 (63%), Gaps = 53/716 (7%)

Query: 1   MALPPSSLTLSPSILH--FPPSSDPPYKLLQNQPSLALL-SKCT-NMQNIKQVHSQIIKT 56
           M+   ++ T +P   H   P         L ++  L LL ++CT ++ ++KQ H+ I++T
Sbjct: 1   MSSTATTATEAPYHHHHLIPNGHSTETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRT 60

Query: 57  G-LHNTQFALSKLIEICAVSPFGDLSY--ALLVFETIREPNQVIWNNIIRGHSLSSSPVV 113
           G L ++  A S +     VS    LS+  +L VF+ +R+PN  +WN +I+    ++ P  
Sbjct: 61  GHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFK 120

Query: 114 AIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLIN 173
           AI  Y  M+++ F PN YT+P +LK+C+    ++EG Q+HAH++K GL  D  + +S I 
Sbjct: 121 AILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIR 180

Query: 174 MYAQNGEL-ESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPN 232
           MYA  G L E+ R++ +K    DAV + A+I GY   G ++ AR+LF+ MP R       
Sbjct: 181 MYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDR------- 233

Query: 233 ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFE 292
                                            S +   NA+I  +S+CG +  AR+ F+
Sbjct: 234 ---------------------------------SMISTWNAMISGFSRCGMVEVAREFFD 260

Query: 293 SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL 352
            +++RD ISW+ MI GY     + EAL +F QM +  I P      SVL ACA LGALD 
Sbjct: 261 EMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQ 320

Query: 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLA 412
           G+WIH Y  +N  +L+ V L TSL+DMYAKCG I  A +VF+ M  K ++SWNAMI GLA
Sbjct: 321 GRWIHTYAKRNSIQLDGV-LGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLA 379

Query: 413 MHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL 472
           MHG+A+ A+ LFS+M    + P++ITFVGVL+AC H GL+  G   FN+M ++Y + P++
Sbjct: 380 MHGRAEDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQI 436

Query: 473 QHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
           +HYGC+VDLLGRAGL  EAE ++ ++  +P  A+W +LLGACR HG +ELGE V K LLE
Sbjct: 437 EHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLE 496

Query: 533 LEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG-SVVHEFLVGD 591
           LEP+N G Y LLSN+YA AGRW++V  +R  + ++G+K  PG S I++G   VH+F++GD
Sbjct: 497 LEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGD 556

Query: 592 KVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLIS 651
             HPQ K IY+MLD++   L+  G+ PD S+VL+D+DEE KE A+  HSEKLAI +GLI+
Sbjct: 557 GSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLIN 616

Query: 652 TKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           T PGTTIRIVKNLRVC +CHSATKLIS+++NREII RDR R+HHF++G CSC D+W
Sbjct: 617 TSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 672


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 303/708 (42%), Positives = 444/708 (62%), Gaps = 34/708 (4%)

Query: 31  QPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           +  ++LL KC +M  +KQ+HS  IK GL +      ++I  C     G + YA  VF+ I
Sbjct: 8   ESPISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAI 67

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            +P   IWN +I+G+S  + P   +  Y+ M+ S   P+ +TFPF+LK   +  A+  GK
Sbjct: 68  PQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGK 127

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            +  H +K G +S+ FV  + I+M++    ++ AR VF+     + V++  +++GY    
Sbjct: 128 VLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVK 187

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
               ++ LF EM  R     PN  T+V +LSAC+ +  LE G  +   I G  +  NL +
Sbjct: 188 QFKKSKMLFIEMEKR--GVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLIL 245

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWN--------------------------- 303
            N LIDM++ CG++ +A+ +F++++ RDVISW                            
Sbjct: 246 ENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDY 305

Query: 304 ----VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
                MI GY   + + EAL LFR+M  SN++P++ T +S+L ACA+LGAL+LG+W+  Y
Sbjct: 306 VSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTY 365

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADK 419
           IDKN  K N+  +  +LIDMY KCGN+  A++VF  M +K   +W AMI GLA++G  ++
Sbjct: 366 IDKNSIK-NDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEE 424

Query: 420 ALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479
           AL++FS MI   + PD+IT++GVL AC HAG+++ G+ +F +M   + I P + HYGCMV
Sbjct: 425 ALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMV 484

Query: 480 DLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG 539
           DLLGRAG  +EA  ++  M +KP++ +W SLLGACRVH  ++L E  AK +LELEPEN  
Sbjct: 485 DLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGA 544

Query: 540 AYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKH 599
            YVLL N+YA   RW+++  +R  + ++G+KK PGCS +E+   V+EF+ GD+ HPQSK 
Sbjct: 545 VYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKE 604

Query: 600 IYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIR 659
           IY  L+ +   L K+G+ PDTSEV  D+ EE KE AL  HSEKLAIAY LIS+ PG TIR
Sbjct: 605 IYAKLENMMQDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGITIR 664

Query: 660 IVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           IVKNLR+C +CH   KL+S+ +NRE+I RD+ RFHHF+ G+CSCN++W
Sbjct: 665 IVKNLRMCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 306/707 (43%), Positives = 449/707 (63%), Gaps = 28/707 (3%)

Query: 5   PSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTG-LHNTQF 63
           P+     P+  H P  +DP Y                    + Q+H+ +IK+G L  +  
Sbjct: 11  PTPAGAGPAPPHAPLRTDPRY--------------------LPQLHAALIKSGELTGSPK 50

Query: 64  ALSKLIEICAVSPFGDLSYALLVFETIREP--NQVIWNNIIRGHSLSSSPVVAIKFYVRM 121
               L+E  A SP   L YA+ +F     P  +   +N ++R    +  P  A+  +V M
Sbjct: 51  CFHSLLEAAAASP-TLLPYAVSLFRLGPRPPLSTPCYNVLMRALLHAGHPEDALHLFVEM 109

Query: 122 I-LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           + ++   P+ +T    LKSC+++  +  G+ I A+ +K GL +D FV +SLI+MYA   +
Sbjct: 110 LDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRD 169

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
           + +A+L+F+       V + A+IT Y   G   +  ++F  M   E     +E T+V+V+
Sbjct: 170 VAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGM--LEVGVAFDEITLVSVV 227

Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVI 300
           +AC  +G  +LG WV   ++  GL  N ++  ALIDMY+KCG+L KAR LF+ ++ RDV+
Sbjct: 228 TACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVV 287

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           +W+ MI GYT     +EAL LF +M  + +EPNDVT +SVL ACA LGAL+ GKW+H+YI
Sbjct: 288 AWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYI 347

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
            +    L  + L T+L+D YAKCG I  A + F+ M  K   +W A+I G+A +G+  +A
Sbjct: 348 RRKRLSLT-IILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREA 406

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
           L LFS M    ++P D+TF+GVL AC+H+ L++ GR++F++M QDY I P+ +HYGC+VD
Sbjct: 407 LELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVD 466

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540
           LLGRAGL DEA   ++TM ++P+A IW +LL +C VH  +E+GE   K ++ L P + G 
Sbjct: 467 LLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLNPSHSGD 526

Query: 541 YVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHI 600
           Y+LLSN+YA  G+W + A IR  + D+G++K PGCS IE+  VV EF   D  HPQ K I
Sbjct: 527 YILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEFFAEDSDHPQLKEI 586

Query: 601 YEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRI 660
           Y+ ++E+   ++ +G++P+T++V  ++DE  KE ++SHHSEKLAIA+GL+   PG TIR+
Sbjct: 587 YQKVEEMIDRIKMAGYIPNTADVRLEVDEHEKEVSVSHHSEKLAIAFGLMKLDPGATIRL 646

Query: 661 VKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            KNLRVC +CHSATKLISK++NREI+ RDRNRFHHFKDG CSCNDYW
Sbjct: 647 SKNLRVCTDCHSATKLISKVYNREIVVRDRNRFHHFKDGTCSCNDYW 693


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 306/715 (42%), Positives = 447/715 (62%), Gaps = 37/715 (5%)

Query: 27  LLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLV 86
           L +N   L+ + KC++ + +K+VH+++++TGL    F+ SKL    A+S F  L YA  +
Sbjct: 22  LFRNHQILSTIDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNL 81

Query: 87  FETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI-LSGFVPNTYTFPFILKSCAKISA 145
           F+ I +PN   WN +IR ++ SS P  +   ++ ++     +PN +TFPF++K+ +++ A
Sbjct: 82  FDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKA 141

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
              G  +H   +KL    D ++  SL+  Y   G+L  A  +F   S +D VS+ ++I+ 
Sbjct: 142 SRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISA 201

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           +A     +DA +LF  + +  EN +PN  T+V VLSACA    LE G WVCS IE  G+ 
Sbjct: 202 FAQGNCPEDALELF--LKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIK 259

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY---------- 315
            +L + NA++DMY+KCG +  A+ LF+ + +RDV SW +M+ GY    DY          
Sbjct: 260 VDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAM 319

Query: 316 ---------------------KEALMLFRQMLQSNI-EPNDVTFLSVLPACAYLGALDLG 353
                                KEAL +F ++  S I +P++VT +S L ACA LGA+DLG
Sbjct: 320 PVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLG 379

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAM 413
            WIH YI +    LN   L +SL+DMYAKCG+++ A +VF  +  + +  W+AMI+GL M
Sbjct: 380 GWIHVYIKREGIVLN-CHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGM 438

Query: 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQ 473
           HG+   A+ LF  M    ++P+ +TF  VL AC+HAGL+D GR +F+ M   Y + P+++
Sbjct: 439 HGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMK 498

Query: 474 HYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL 533
           HY CMVD+LGRAG  +EA  L+  M   P A++W +LLGAC +H  +ELGE  +  LL+L
Sbjct: 499 HYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKL 558

Query: 534 EPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKV 593
           EP N GA VLLSN+YA  GRW+ V+ +R  + D  +KK PGCSSIE    VHEFLVGD  
Sbjct: 559 EPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNT 618

Query: 594 HPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE-EWKEGALSHHSEKLAIAYGLIST 652
           HP S +IY  L+EI   L+  G+ P+ S +L  ++E + KE ALS HSEKLAIA+GL++ 
Sbjct: 619 HPLSSNIYSKLEEIATKLKSVGYEPNKSHLLQLIEEDDLKEQALSLHSEKLAIAFGLVTL 678

Query: 653 KPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            P   IR+VKNLR+CG+CH+  KL+S++++R+I+ RDR RFHHF+DG+CSC DYW
Sbjct: 679 APSQPIRVVKNLRICGDCHAFAKLVSRVYDRDILLRDRYRFHHFRDGHCSCMDYW 733



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/460 (28%), Positives = 232/460 (50%), Gaps = 55/460 (11%)

Query: 5   PSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQN-------IKQ--------- 48
           P+  T +  I  +  SSDP    +     L LL KC ++ N       IK          
Sbjct: 88  PNLYTWNTLIRAYASSSDPFQSFV---IFLDLLDKCEDLPNKFTFPFVIKAASELKASRV 144

Query: 49  ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
              VH   IK       + L+ L+        GDLS A  +F+ I   + V WN++I   
Sbjct: 145 GTAVHGMAIKLSFGMDLYILNSLVRFYGAC--GDLSMAERLFKGISCKDVVSWNSMISAF 202

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
           +  + P  A++ +++M     +PN+ T   +L +CAK   +  G+ + +++ + G++ D 
Sbjct: 203 AQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDL 262

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
            +  ++++MY + G ++ A+ +F++   RD  S+T ++ GYA  G  D AR +F+ MP++
Sbjct: 263 TLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVK 322

Query: 226 E------------------ENFV------------PNESTVVTVLSACAHMGSLELGNWV 255
           E                  E               P+E T+V+ LSACA +G+++LG W+
Sbjct: 323 EIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWI 382

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
              I+  G+  N H+ ++L+DMY+KCG L KA ++F S+E+RDV  W+ MI G       
Sbjct: 383 HVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRG 442

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
           K A+ LF +M ++ ++PN VTF +VL AC++ G +D G+     ++  +  +  +  +  
Sbjct: 443 KAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYAC 502

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMH 414
           ++D+  + G ++ A ++ + M     AS W A++   ++H
Sbjct: 503 MVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLH 542


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 322/717 (44%), Positives = 455/717 (63%), Gaps = 54/717 (7%)

Query: 1   MALPPSSLTLSPSILH---FPPSSDPPYKLLQNQPSLALL-SKCT-NMQNIKQVHSQIIK 55
           M+   ++ T +P   H    P         L ++  L LL ++CT ++ ++KQ H+ I++
Sbjct: 1   MSSTATTATEAPYHHHHHLIPKGHSTETSKLSHKAILHLLNTQCTTSLHHLKQAHALILR 60

Query: 56  TG-LHNTQFALSKLIEICAVSPFGDLSY--ALLVFETIREPNQVIWNNIIRGHSLSSSPV 112
           TG L ++  A S +     VS    LS+  +L VF+ +R+PN  +WN +I+    ++ P 
Sbjct: 61  TGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPF 120

Query: 113 VAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLI 172
            AI  Y  M+++   PN YT+P +LK+C+    ++EG Q+HAH++K GL  D  + +S I
Sbjct: 121 KAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAI 180

Query: 173 NMYAQNGEL-ESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVP 231
            MYA  G L E+ R++ +K    DAV + A+I GY   G ++ AR+LF+ MP R      
Sbjct: 181 RMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDR------ 234

Query: 232 NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLF 291
                                             S +   NA+I  +S+CG +  AR+ F
Sbjct: 235 ----------------------------------SMISTWNAMISGFSRCGMVEVAREFF 260

Query: 292 ESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALD 351
           + +++RD ISW+ MI GY     + EAL +F QM +  I P      SVL ACA LGALD
Sbjct: 261 DEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALD 320

Query: 352 LGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGL 411
            G+WIH Y  +N  +L+ V L TSL+DMYAKCG I  A +VF+ M  K ++SWNAMI GL
Sbjct: 321 QGRWIHTYAKRNSIQLDGV-LGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGL 379

Query: 412 AMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK 471
           AMHG+A+ A+ LFS+M    + P++ITFVGVL+AC H GL+  G   FN+M ++Y + P+
Sbjct: 380 AMHGRAEDAIDLFSKM---DIYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQ 436

Query: 472 LQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLL 531
           ++HYGC+VDLLGRAGL  EAE ++ ++  +P  A+W +LLGACR HG +ELGE V K LL
Sbjct: 437 IEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILL 496

Query: 532 ELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG-SVVHEFLVG 590
           ELEP+N G Y LLSN+YA AGRW++V  +R  + ++G+K  PG S I++G   VH+F++G
Sbjct: 497 ELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIG 556

Query: 591 DKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLI 650
           D  HPQ K IY+MLD++   L+  G+ PD S+VL+D+DEE KE A+  HSEKLAI +GLI
Sbjct: 557 DGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLI 616

Query: 651 STKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +T PGTTIRIVKNLRVC +CHSATKLIS+++NREII RDR R+HHF++G CSC D+W
Sbjct: 617 NTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 673


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 316/762 (41%), Positives = 459/762 (60%), Gaps = 92/762 (12%)

Query: 37  LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQV 96
           L  C N++   ++ SQ+I TG  +  FA S+L++    SPF  L Y+L +F+ I   N  
Sbjct: 48  LHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGF 107

Query: 97  IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHV 156
           +WN ++R +  S+S   A+  Y  M+ +   P+ YT+P ++++CA       GK+IH HV
Sbjct: 108 MWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHV 167

Query: 157 LKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDAR 216
           LK+G +SD +V  +LINMYA  G +  AR +F++S + D+VS+ +++ GY  +G +++A+
Sbjct: 168 LKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAK 227

Query: 217 -------------------------------QLFDEMP------------------IREE 227
                                          +LF+EM                   + EE
Sbjct: 228 LIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEE 287

Query: 228 NFVP-----------NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALID 276
             V            +E  VV+VLSACAH+  ++ G  +  L+   G+ S +++ NALI 
Sbjct: 288 ALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIH 347

Query: 277 MYS-------------------------------KCGDLVKARDLFESIEKRDVISWNVM 305
           MYS                               KCG + KAR LF+ + ++D++SW+ +
Sbjct: 348 MYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAV 407

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365
           I GY     + E L LF +M    I P++   +SV+ AC +L ALD GKW+HAYI KN  
Sbjct: 408 ISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGL 467

Query: 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
           K+N V L T+L+DMY KCG ++ A +VF+GM  K ++SWNA+I GLA++G  +++L +FS
Sbjct: 468 KVN-VILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFS 526

Query: 426 RMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485
            M   G+ P++ITF+GVL AC H GL+D GR +F +MI+ + I P ++HYGCMVDLLGRA
Sbjct: 527 EMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRA 586

Query: 486 GLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545
           GL +EAE L+++M M PD A W +LLGAC+ HG  E+GE V + L+EL+P++ G +VLLS
Sbjct: 587 GLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLS 646

Query: 546 NMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLD 605
           N++A  G W+DV  +R  +  +G+ K PGCS IE   VVHEFL GDK HP    +  ML+
Sbjct: 647 NIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLN 706

Query: 606 EIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLR 665
           E+   L+  G+ PDT+EV  D+DEE KE  L  HSEKLAIA+GL++  P T IRI+KNLR
Sbjct: 707 EMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLR 766

Query: 666 VCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +C +CH+A KLISK + REI+ RDR+RFH+FK+G CSC DYW
Sbjct: 767 ICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 808


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 327/786 (41%), Positives = 460/786 (58%), Gaps = 101/786 (12%)

Query: 19  PSSDPPYKLLQNQPSLAL------LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEIC 72
           P   P + L   +P+L L      L KC N++   Q+ SQ+I +G     FA S+L++  
Sbjct: 12  PFKIPTFTL---KPTLTLPILETHLQKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFS 68

Query: 73  AVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYT 132
              PF +++ +  +F  I  PN  I N +++G+   +SP  AI  Y  M+ S    + YT
Sbjct: 69  TELPFININQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYT 128

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           +P + +SC+   A  +GK I  HVLK+G +SD ++  +LINMYA  G L  AR VF+ SS
Sbjct: 129 YPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSS 188

Query: 193 LRDAVSYTALITGY-------------------------------ASRGYLDDARQLFDE 221
           + D VS+ +++ GY                                 +G +++A +LF+E
Sbjct: 189 VLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNE 248

Query: 222 MPIR------------EEN-----------------FVPNESTVVTVLSACAHMGSLELG 252
           M  +            E+N                  + +E  V++VLSAC+ +  +  G
Sbjct: 249 MKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITG 308

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYS-------------------------------KC 281
             V  L+   G+ + +++ NALI MYS                               KC
Sbjct: 309 KLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKC 368

Query: 282 GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
           G++ KAR LF+S+  +D +SW+ MI GY     + E L+LF++M     +P++   +SV+
Sbjct: 369 GEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVI 428

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
            AC +L ALD GKWIHAYI KN  K+N + L T+LI+MY K G ++ A +VF G+  K +
Sbjct: 429 SACTHLAALDQGKWIHAYIRKNGLKIN-IILGTTLINMYMKLGCVEDALEVFKGLEEKGV 487

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
           ++WNA+I GLAM+G  DK+L  FS M   G+ P++ITFV VL AC H GL+D G ++FN+
Sbjct: 488 STWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNS 547

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
           MIQ++KI P ++HYGCMVDLLGRAG+  EAE L+++M M PD + W +LLGAC+ +G  E
Sbjct: 548 MIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNE 607

Query: 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
            GE + + L+EL P++ G  VLLSN+YA  G W DV  +R  +   G+ K PGCS IE  
Sbjct: 608 TGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAH 667

Query: 582 SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
             VHEFL GDK HPQ++HI  MLDE+   L+  G+ PDT EV  D+DEE KE  L  HSE
Sbjct: 668 GRVHEFLAGDKTHPQNEHIEHMLDEMAKKLKLEGYAPDTREVSLDIDEEEKETTLFRHSE 727

Query: 642 KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
           KLAIA+GLI+  P T IRIVKNLR+C +CH+A KLISK FNREI+ RDR+RFHHFK G+C
Sbjct: 728 KLAIAFGLIAIDPPTPIRIVKNLRICNDCHTAAKLISKAFNREIVVRDRHRFHHFKQGSC 787

Query: 702 SCNDYW 707
           SC DYW
Sbjct: 788 SCMDYW 793


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  613 bits (1580), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 300/731 (41%), Positives = 465/731 (63%), Gaps = 39/731 (5%)

Query: 13  SILHFPPSSDPPYKLLQNQPS--LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIE 70
           S+   P  S+P      N+ S  ++L+ +C +++ +KQ H  +I+TG  +  ++ SKL  
Sbjct: 11  SLPRHPNFSNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFA 70

Query: 71  ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMIL-SGFVPN 129
           + A+S F  L YA  VF+ I +PN   WN +IR ++    PV++I  ++ M+  S   PN
Sbjct: 71  MAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPN 130

Query: 130 TYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN 189
            YTFPF++K+ A++S++S G+ +H   +K  + SD FV  SLI+ Y   G+L+SA  VF 
Sbjct: 131 KYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFT 190

Query: 190 KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL 249
               +D VS+ ++I G+  +G  D A +LF +M    E+   +  T+V VLSACA + +L
Sbjct: 191 TIKEKDVVSWNSMINGFVQKGSPDKALELFKKM--ESEDVKASHVTMVGVLSACAKIRNL 248

Query: 250 ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309
           E G  VCS IE + +  NL + NA++DMY+KCG +  A+ LF+++E++D ++W  M+ GY
Sbjct: 249 EFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGY 308

Query: 310 THTSDYK-------------------------------EALMLFRQM-LQSNIEPNDVTF 337
             + DY+                               EAL++F ++ LQ N++ N +T 
Sbjct: 309 AISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITL 368

Query: 338 LSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG 397
           +S L ACA +GAL+LG+WIH+YI K+  ++ N  + ++LI MY+KCG+++ + +VF+ + 
Sbjct: 369 VSTLSACAQVGALELGRWIHSYIKKHGIRM-NFHVTSALIHMYSKCGDLEKSREVFNSVE 427

Query: 398 YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
            + +  W+AMI GLAMHG  ++A+ +F +M    ++P+ +TF  V  AC+H GL+D    
Sbjct: 428 KRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAES 487

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
            F+ M  +Y I P+ +HY C+VD+LGR+G  ++A   ++ M + P  ++W +LLGAC++H
Sbjct: 488 LFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIH 547

Query: 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577
             L L E     LLELEP N GA+VLLSN+YA  G+W++V+ +R  +   G+KK PGCSS
Sbjct: 548 ANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSS 607

Query: 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM-DEEWKEGAL 636
           IE+  ++HEFL GD  HP S+ +Y  L E+   L+ +G+ P+ S+VL  + +EE KE +L
Sbjct: 608 IEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSL 667

Query: 637 SHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHF 696
           + HSEKLAI YGLIST+    IR++KNLRVCG+CHS  KLIS++++REII RDR RFHHF
Sbjct: 668 NLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHF 727

Query: 697 KDGNCSCNDYW 707
           ++G CSCND+W
Sbjct: 728 RNGQCSCNDFW 738


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 299/690 (43%), Positives = 446/690 (64%), Gaps = 20/690 (2%)

Query: 23  PPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTG-LHNTQFALSKLIEICAVSPFGDLS 81
           PP   L+  PS            + Q+H+ +IK+G L  +  +   L+E  A SP   L 
Sbjct: 20  PPRAPLRADPSY-----------LPQLHAALIKSGELTGSAKSFHSLLEAAAASP-TLLP 67

Query: 82  YALLVFETIREP--NQVIWNNIIRGHSLSSSPVVAIKFYVRMI--LSGFVPNTYTFPFIL 137
           YA+ +F     P  +   +N ++R    +  P  A+  ++ M+   S    + +T    L
Sbjct: 68  YAVSLFRLGPRPPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACAL 127

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
           KSC+++ A+  G+ + A+ +K GL +D FV +SLI+MYA  G++ +ARLVF+ +     V
Sbjct: 128 KSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVV 187

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
            + A++  Y   G   +  ++F  M   E     +E T+V+V++AC  +G  +LG WV  
Sbjct: 188 MWNAIVAAYLKNGDWMEVVEMFKGM--LEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAG 245

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
            ++  GL  N  +  AL+DMY+KCG++ KAR LF+ ++ RDV++W+ MI GYT     +E
Sbjct: 246 HVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCRE 305

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           AL LF +M  + +EPNDVT +SVL ACA LGAL+ GKW+H+Y+ +    L  + L T+L+
Sbjct: 306 ALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTI-LGTALV 364

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI 437
           D YAKCG I  A + F+ M  K   +W A+I G+A +G+  +AL LFS M   G++P D+
Sbjct: 365 DFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDV 424

Query: 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT 497
           TF+GVL AC+H+ L++ GR++F++M +DY I P+++HYGCMVDLLGRAGL DEA   ++T
Sbjct: 425 TFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRT 484

Query: 498 MEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557
           M ++P+A IW +LL +C VH  + +GE   K ++ L P + G YVLLSN+YA AG+W D 
Sbjct: 485 MPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDA 544

Query: 558 ATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFV 617
           A +R  + D+G++K PGCS IE+  VV EF   D  HP+ + IY+ ++E+   ++ +G+V
Sbjct: 545 AMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDHPELREIYQKVEEMIGRIKVAGYV 604

Query: 618 PDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLI 677
           P+T++V  +++E  KE ++SHHSEKLAIA+GL+   PG TIR+ KNLRVC +CHSATKLI
Sbjct: 605 PNTADVRLEVEEREKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCADCHSATKLI 664

Query: 678 SKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           SK+++REI+ RDRN FHHFKDG CSCNDYW
Sbjct: 665 SKVYDREIVVRDRNIFHHFKDGTCSCNDYW 694


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 305/688 (44%), Positives = 439/688 (63%), Gaps = 16/688 (2%)

Query: 31  QPSLALLSKCTNMQN-----------IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGD 79
            PS  + SK   ++N           +K +H+++++  L    + L+ LI  CA+  FG 
Sbjct: 6   NPSSPVFSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLN-LILCCALD-FGS 63

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKS 139
            +Y+ LVF  ++EPN  +WN +IRG         AI  Y  M   GF+PN +T PF+LK+
Sbjct: 64  TNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKA 123

Query: 140 CAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSY 199
           CA+   +  G +IH+ ++K G + D FV TSL+++Y +    + A  VF+    ++ VS+
Sbjct: 124 CARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSW 183

Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
           TA+ITGY S G+  +A   F ++   E    P+  ++V VL+ACA +G    G W+   I
Sbjct: 184 TAIITGYISSGHFREAIGAFKKL--LEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYI 241

Query: 260 EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEAL 319
              G+G N+ V  +L+DMY KCG+L +A  +F ++ ++D++SW+ MI GY      ++AL
Sbjct: 242 SDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQAL 301

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
            LF QM   N++P+  T + VL ACA LGALDLG W  + +D+N + L+N  L T+LIDM
Sbjct: 302 DLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRN-EFLSNPVLGTALIDM 360

Query: 380 YAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439
           Y+KCG++  A ++F  M  K    WNAM+ GL+M+G A    SLFS +   G++PD+ TF
Sbjct: 361 YSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTF 420

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME 499
           +G+L  C H G ++ GRQ+FN M + + ++P ++HYGCMVDLLGRAGL +EA  L+  M 
Sbjct: 421 IGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMP 480

Query: 500 MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559
           MKP+A +W +LLG C++H    L E V K L+ELEP N G YV LSN+Y+G  RW++   
Sbjct: 481 MKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEK 540

Query: 560 IRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPD 619
           IR+ + ++ ++K+  CS IE+  +VHEFLVGDK H  S+ IY  LDE+   L+  G VP 
Sbjct: 541 IRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPT 600

Query: 620 TSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISK 679
           T  VL+D++EE KE  L +HSEKLA+A+GLI++ P   IR+VKNLRVCG+CH A KLISK
Sbjct: 601 TEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISK 660

Query: 680 IFNREIIARDRNRFHHFKDGNCSCNDYW 707
           I  REII RD NRFH F DG+CSC DYW
Sbjct: 661 ITKREIIIRDTNRFHTFIDGSCSCRDYW 688


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 304/672 (45%), Positives = 435/672 (64%), Gaps = 6/672 (0%)

Query: 37  LSKCTNMQN-IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ 95
           LS   N  N +K +H+++++  L    + L+ LI  CA+  FG  +Y+ LVF  ++EPN 
Sbjct: 22  LSNGLNFFNQLKHIHARLLRLHLDQDNYLLN-LILCCALD-FGSTNYSKLVFSQVKEPNI 79

Query: 96  VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAH 155
            +WN +IRG         AI  Y  M   GF+PN +T PF+LK+CA+   +  G +IH+ 
Sbjct: 80  FLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSL 139

Query: 156 VLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDA 215
           ++K G + D FV TSL+++Y +    + A  VF+    ++ VS+TA+ITGY S G+  +A
Sbjct: 140 LVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREA 199

Query: 216 RQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALI 275
              F ++   E    P+  ++V VL+ACA +G    G W+   I   G+G N+ V  +L+
Sbjct: 200 IGAFKKL--LEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLL 257

Query: 276 DMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV 335
           DMY KCG+L +A  +F ++ ++D++SW+ MI GY      ++AL LF QM   N++P+  
Sbjct: 258 DMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCY 317

Query: 336 TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
           T + VL ACA LGALDLG W  + +D+N + L+N  L T+LIDMY+KCG++  A ++F  
Sbjct: 318 TMVGVLSACATLGALDLGIWASSLMDRN-EFLSNPVLGTALIDMYSKCGSVTQAWEIFTA 376

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
           M  K    WNAM+ GL+M+G A    SLFS +   G++PD+ TF+G+L  C H G ++ G
Sbjct: 377 MKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEG 436

Query: 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACR 515
           RQ+FN M + + ++P ++HYGCMVDLLGRAGL +EA  L+  M MKP+A +W +LLG C+
Sbjct: 437 RQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCK 496

Query: 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGC 575
           +H    L E V K L+ELEP N G YV LSN+Y+G  RW++   IR+ + ++ ++K+  C
Sbjct: 497 LHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRAC 556

Query: 576 SSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGA 635
           S IE+  +VHEFLVGDK H  S+ IY  LDE+   L+  G VP T  VL+D++EE KE  
Sbjct: 557 SWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHF 616

Query: 636 LSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHH 695
           L +HSEKLA+A+GLI++ P   IR+VKNLRVCG+CH A KLISKI  REII RD NRFH 
Sbjct: 617 LGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHT 676

Query: 696 FKDGNCSCNDYW 707
           F DG+CSC DYW
Sbjct: 677 FIDGSCSCRDYW 688


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  602 bits (1553), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 303/720 (42%), Positives = 454/720 (63%), Gaps = 42/720 (5%)

Query: 27  LLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGD-LSYALL 85
           LL+N  SL LL  C + +   Q+H+Q I  GLH+  F++S+LI   ++    D L ++ L
Sbjct: 6   LLENPSSLCLLESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRL 65

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVP-NTYTFPFILKSCAKIS 144
           +F  I  PN  +WN +IRG+S S +P  AI  Y+ MI  G  P N +TFPF+L SCA++S
Sbjct: 66  LFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLS 125

Query: 145 AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
           ++  G ++H+H++K G ESD FV  +LI++Y+  G L  AR +F++S +RD VSY  +I 
Sbjct: 126 SLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIK 185

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH-- 262
           GYA     + A  LF EM  +    +P+E T V + S C+ +    +G  + + +  +  
Sbjct: 186 GYAEVNQPESALCLFGEM--QNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLR 243

Query: 263 GLGSNLHVTNALIDMYSKCG--------------------------------DLVKARDL 290
            + SN+ + +A++DMY+KCG                                ++  AR L
Sbjct: 244 SIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKL 303

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350
           F  + +RDVISW  MI GY+      EAL LF++M    I+P++VT ++VL ACA LGA 
Sbjct: 304 FNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAF 363

Query: 351 DLGKWI-HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG--YKTLASWNAM 407
           DLGK + H YI+      N + L  +++DMYAKCG+I +A ++F  +G   KT   +N+M
Sbjct: 364 DLGKRLYHQYIENGVFNQNTI-LTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSM 422

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           I+GLA HG  + A+++F  +I  GL+PD++TFVGVL AC H+GL++ G++ F +M   Y 
Sbjct: 423 IAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYG 482

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
           I P+++HYGCMVDLLGR G  +EA  L++ M  + ++ IW +LL ACR HG +++GE   
Sbjct: 483 IKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAG 542

Query: 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF 587
           + LLE+E ++   YVLLSN+ A A +W++   +R  + D G++K PG S IE+G  +H F
Sbjct: 543 QKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRF 602

Query: 588 LVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAY 647
           +  DK HPQ K I  ML ++   L+ +G+VP+T++V++D+DEE KE  +S+HSEKLA+A+
Sbjct: 603 VASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALAF 662

Query: 648 GLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           GL+   P  TIRIVKNLR+C +CH A KL+S+I+ REI  RD  RFHHF++G+CSC D+W
Sbjct: 663 GLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDFW 722


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  599 bits (1544), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 299/658 (45%), Positives = 440/658 (66%), Gaps = 7/658 (1%)

Query: 53  IIKTGLHNTQFALSKLI-EICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSP 111
           ++ TG  + + +L+KLI  + ++   G + YA  VF   RE + + WN+++R    S+ P
Sbjct: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLG-VGYAYSVFAHTRELDVLTWNSMLRAFVNSNMP 59

Query: 112 VVAIKFYVRMI-LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTS 170
             A++ Y  M+  S  VP+ +TFP +LK CA +     GK +H  V+K  L SD ++ T+
Sbjct: 60  RRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETT 119

Query: 171 LINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV 230
           L+NMYA  G+L+SAR +F +   R+ V +T++I+GY      ++A  L+ +M   E+ F 
Sbjct: 120 LLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKME--EDGFS 177

Query: 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDL 290
           P+E T+ T++SACA +  L +G  + S I    +     + +AL++MY+KCGDL  AR +
Sbjct: 178 PDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQV 237

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ-SNIEPNDVTFLSVLPACAYLGA 349
           F+ +  +DV +W+ +I GY   +   EAL LFR++   SN+ PN+VT L+V+ ACA LG 
Sbjct: 238 FDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGD 297

Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
           L+ G+W+H YI +  QK ++VSL  SLIDM++KCG+I AA+++FD M YK L SWN+M++
Sbjct: 298 LETGRWVHDYITRT-QKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVN 356

Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS 469
           G A+HG   +AL+ F  M    LQPD+ITF+GVL+AC+HAGL+  G++ F  +   Y + 
Sbjct: 357 GFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVR 416

Query: 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKH 529
            K +HYGCMVDLL RAGL  EA   ++ M ++PD AIW S+LGACRV+  LELGE  A+ 
Sbjct: 417 LKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARF 476

Query: 530 LLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLV 589
           LL+LEP N G Y+LLSN+YA    W++V  +R  +N+KG++K PGCSS+ + ++ H FL 
Sbjct: 477 LLKLEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLA 536

Query: 590 GDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGL 649
           GD  HP+   I  ML ++   L+ +G+V DTSEVL ++D+  KE ++S HSEKLA+ YGL
Sbjct: 537 GDCSHPEIAEISIMLRQVREKLKLAGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGL 596

Query: 650 ISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           + ++ G  I I+KNLRVC +CH+  KL+SKI+ R+I  RDRNRFHHFKDG+CSC DYW
Sbjct: 597 LKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 118/363 (32%), Positives = 209/363 (57%), Gaps = 4/363 (1%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K +H Q++K  LH+  +  + L+ + A    GDL  A  +FE +   N+V+W ++I G+ 
Sbjct: 99  KVLHGQVVKYMLHSDLYIETTLLNMYAAC--GDLKSARFLFERMGHRNKVVWTSMISGYM 156

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +  P  A+  Y +M   GF P+  T   ++ +CA++  +  G ++H+H+ ++ ++    
Sbjct: 157 KNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAV 216

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           + ++L+NMYA+ G+L++AR VF+K S +D  +++ALI GY       +A QLF E+    
Sbjct: 217 LGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVA-GG 275

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
            N  PNE T++ V+SACA +G LE G WV   I     G ++ + N+LIDM+SKCGD+  
Sbjct: 276 SNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDA 335

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A+ +F+S+  +D+ISWN M+ G+      +EAL  FR M  ++++P+++TF+ VL AC++
Sbjct: 336 AKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSH 395

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWN 405
            G +  GK +   I+  +        +  ++D+  + G +  A +    M  +   A W 
Sbjct: 396 AGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWG 455

Query: 406 AMI 408
           +M+
Sbjct: 456 SML 458


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 318/772 (41%), Positives = 448/772 (58%), Gaps = 103/772 (13%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVS----PFGDLSYALLVFETI 90
           +LL  C   ++ KQ+ SQ I TGL    +A S+LI   + S    PF    Y+L +F  +
Sbjct: 8   SLLQSCKCPRHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPF---HYSLRIFNHL 64

Query: 91  REPNQVIWNNIIRGH-SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG 149
           R PN   WN I+R H  L +SP  A+  Y   + S   P++YT+P +L+ CA   +  EG
Sbjct: 65  RNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEG 124

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           +Q+HAH +  G + D +V  +L+N+YA  G + SAR VF +S + D VS+  L+ GY   
Sbjct: 125 RQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQA 184

Query: 210 GYLDDARQLFDEMPIR-------------------------------------------- 225
           G +++A ++F+ MP R                                            
Sbjct: 185 GEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSC 244

Query: 226 -EENFVPNESTVVTV-----------------LSACAHMGSLELGNWVCSLIEGHGLGSN 267
            E+N +  E+ V+ V                 LSAC+ + ++E+G WV  L    G+   
Sbjct: 245 YEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDY 304

Query: 268 LHVTNALIDMYSKCGDLVKARDLFE--------------------------------SIE 295
           + + NALI +YS CG++V AR +F+                                S+ 
Sbjct: 305 VSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMP 364

Query: 296 KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKW 355
           ++DV+SW+ MI GY     + EAL LF++M    + P++   +S + AC +L  LDLGKW
Sbjct: 365 EKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKW 424

Query: 356 IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHG 415
           IHAYI +N  ++N V L T+LIDMY KCG ++ A +VF  M  K +++WNA+I GLAM+G
Sbjct: 425 IHAYISRNKLQVN-VILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNG 483

Query: 416 KADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY 475
             +++L++F+ M   G  P++ITF+GVL AC H GL++ GR YFN+MI ++KI   ++HY
Sbjct: 484 SVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHY 543

Query: 476 GCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEP 535
           GCMVDLLGRAGL  EAE L+ +M M PD A W +LLGACR H   E+GE + + L++L+P
Sbjct: 544 GCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQP 603

Query: 536 ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHP 595
           ++ G +VLLSN+YA  G W +V  IR  +   G+ K PGCS IE    VHEFL GDK HP
Sbjct: 604 DHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKTHP 663

Query: 596 QSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPG 655
           Q   I  MLD + A L+  G+VP TSEV  D+DEE KE AL  HSEKLA+A+GLI+  P 
Sbjct: 664 QINDIEHMLDVVAAKLKIEGYVPTTSEVSLDIDEEEKETALFRHSEKLAVAFGLITISPP 723

Query: 656 TTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           T IR+ KNLR+C +CH+  KLISK F+R+I+ RDR+RFHHFK G CSC D+W
Sbjct: 724 TPIRVTKNLRICNDCHTVVKLISKAFDRDIVVRDRHRFHHFKHGACSCMDFW 775



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 107/526 (20%), Positives = 212/526 (40%), Gaps = 90/526 (17%)

Query: 132 TFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGEL---ESARLVF 188
           T   +L+SC         KQ+ +  +  GL +DP+  + LIN  + +  L     +  +F
Sbjct: 5   TLDSLLQSC---KCPRHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIF 61

Query: 189 NKSSLRDAVSYTALITGYASRGYLDDA--RQLFDEMPIREENFVPNESTVVTVLSACAHM 246
           N     +  ++  ++  +    YL ++  + L         +  P+  T   +L  CA  
Sbjct: 62  NHLRNPNTFTWNTIMRAHL---YLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAAR 118

Query: 247 GSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMI 306
            S   G  + +     G   +++V N L+++Y+ CG +  AR +FE     D++SWN ++
Sbjct: 119 VSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLL 178

Query: 307 GGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK 366
            GY    + +EA  +F  M + N   ++                                
Sbjct: 179 AGYVQAGEVEEAERVFEGMPERNTIASN-------------------------------- 206

Query: 367 LNNVSLWTSLIDMYAKCGNIKAAEQVFDGM--GYKTLASWNAMISGLAMHGKADKALSLF 424
                   S+I ++ + G ++ A ++F+G+    + + SW+AM+S    +   ++AL LF
Sbjct: 207 --------SMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLF 258

Query: 425 SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQY----FNAMIQDY-KISPKLQH-YGCM 478
             M G G+  D++  V  LSAC+    +++GR          ++DY  +   L H Y   
Sbjct: 259 VEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSC 318

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
            +++    +FD+   LL       D   W S++      G ++  E +   + E +  + 
Sbjct: 319 GEIVDARRIFDDGGELL-------DLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSW 371

Query: 539 GAYV--------------LLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVV 584
            A +              L   M     R D+ A +        +      +++++G  +
Sbjct: 372 SAMISGYAQHECFSEALALFQEMQLHGVRPDETALV------SAISACTHLATLDLGKWI 425

Query: 585 HEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           H ++  +K+         ++D    +  K G V +  EV Y M+E+
Sbjct: 426 HAYISRNKLQVNVILSTTLID----MYMKCGCVENALEVFYAMEEK 467


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 300/658 (45%), Positives = 439/658 (66%), Gaps = 7/658 (1%)

Query: 53  IIKTGLHNTQFALSKLI-EICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSP 111
           ++ TG  + + +L+KLI  + ++   G + YA  VF   R  + + WN+++R    S+ P
Sbjct: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLG-VGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMP 59

Query: 112 VVAIKFYVRMI-LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTS 170
             A++ Y  M+  S  VP+ +TFP +LK CA +     GK +H  V+K  L SD ++ T+
Sbjct: 60  RRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETT 119

Query: 171 LINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV 230
           L+NMYA  G+L+SAR +F +   R+ V +T++I+GY      ++A  L+ +M   E+ F 
Sbjct: 120 LLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKME--EDGFS 177

Query: 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDL 290
           P+E T+ T++SACA +  L +G  + S I    +     + +AL++MY+KCGDL  AR +
Sbjct: 178 PDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQV 237

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ-SNIEPNDVTFLSVLPACAYLGA 349
           F+ +  +DV +W+ +I GY   +   EAL LFR++   SN+ PN+VT L+V+ ACA LG 
Sbjct: 238 FDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGD 297

Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
           L+ G+W+H YI +  QK ++VSL  SLIDM++KCG+I AA+++FD M YK L SWN+M++
Sbjct: 298 LETGRWVHDYITRT-QKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVN 356

Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS 469
           GLA+HG   +AL+ F  M    LQPD+ITF+GVL+AC+HAGL+  G++ F  +   Y + 
Sbjct: 357 GLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVR 416

Query: 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKH 529
            K +HYGCMVDLL RAGL  EA   ++ M ++PD AIW S+LGACRV+  LELGE  A+ 
Sbjct: 417 LKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARC 476

Query: 530 LLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLV 589
           LLELEP N G Y+LLSN+YA    W++V  +R  +N+KG++K PGCSS+ + ++ H FL 
Sbjct: 477 LLELEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLA 536

Query: 590 GDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGL 649
           GD  HP+   I  ML ++   L+  G+V DTSEVL ++D+  KE ++S HSEKLA+ YGL
Sbjct: 537 GDCSHPEIAEISIMLRQVREKLKLVGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGL 596

Query: 650 ISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           + ++ G  I I+KNLRVC +CH+  KL+SKI+ R+I  RDRNRFHHFKDG+CSC DYW
Sbjct: 597 LKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 116/363 (31%), Positives = 207/363 (57%), Gaps = 4/363 (1%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K +H Q++K  LH+  +  + L+ + A    GDL  A  +FE +   N+V+W ++I G+ 
Sbjct: 99  KVLHGQVVKYMLHSDLYIETTLLNMYAAC--GDLKSARFLFERMGHRNKVVWTSMISGYM 156

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +  P  A+  Y +M   GF P+  T   ++ +CA++  +  G ++H+H+ ++ ++    
Sbjct: 157 KNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAV 216

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           + ++L+NMYA+ G+L++AR VF++ S +D  +++ALI GY       +A QLF E+    
Sbjct: 217 LGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVA-GG 275

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
            N  PNE T++ V+SACA +G LE G WV   I     G ++ + N+LIDM+SKCGD+  
Sbjct: 276 SNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDA 335

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A+ +F+S+  +D+ISWN M+ G       +EAL  F  M  ++++P+++TF+ VL AC++
Sbjct: 336 AKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSH 395

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWN 405
            G +  GK +   I+  +        +  ++D+  + G +  A +    M  +   A W 
Sbjct: 396 AGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWG 455

Query: 406 AMI 408
           +M+
Sbjct: 456 SML 458


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 300/672 (44%), Positives = 436/672 (64%), Gaps = 5/672 (0%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ 95
           L+   + ++++K +H+ +++ GL    + L+K++       FG+ +Y+  + +  +EPN 
Sbjct: 16  LIQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSF--NFGNTNYSFRILDQTKEPNI 73

Query: 96  VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAH 155
            ++N +IRG  L+     +I+ Y  M   G  P+++TFPF+LK+CA++     G ++H+ 
Sbjct: 74  FLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSL 133

Query: 156 VLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDA 215
           V+K G E+D FV  SLIN+Y + G +++A  VF+    ++  S+TA I+GY   G   +A
Sbjct: 134 VVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREA 193

Query: 216 RQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALI 275
             +F  +   E    P+  ++V VLSAC   G L  G W+   I  +G+  N+ V  AL+
Sbjct: 194 IDMFRRLL--EMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALV 251

Query: 276 DMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV 335
           D Y KCG++ +AR +F+ + +++++SW+ MI GY      KEAL LF +ML   ++P+  
Sbjct: 252 DFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCY 311

Query: 336 TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
             + VL +CA LGAL+LG W    I+ N + L+N  L T+LIDMYAKCG +  A +VF G
Sbjct: 312 AMVGVLCSCARLGALELGDWASNLINGN-EFLDNSVLGTALIDMYAKCGRMDRAWEVFRG 370

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
           M  K    WNA ISGLAM G    AL LF +M   G++PD  TFVG+L AC HAGL++ G
Sbjct: 371 MRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEG 430

Query: 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACR 515
           R+YFN+M   + ++P+++HYGCMVDLLGRAG  DEA  L+K+M M+ +A +W +LLG CR
Sbjct: 431 RRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCR 490

Query: 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGC 575
           +H   +L E V K L+ LEP + G YVLLSN+YA + +W++ A IR+ ++++G+KK+PG 
Sbjct: 491 LHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGY 550

Query: 576 SSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGA 635
           S IEV  VVH+FLVGD  HP S+ IY  L E+   L+ +G+VP T  VL+D++EE KE  
Sbjct: 551 SWIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGYVPTTDHVLFDIEEEEKEHF 610

Query: 636 LSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHH 695
           +  HSEKLA+A+GLIST P   I +VKNLRVCG+CH A K IS+I  REII RD NRFH 
Sbjct: 611 IGCHSEKLAVAFGLISTAPNDKILVVKNLRVCGDCHEAIKHISRIAGREIIVRDNNRFHC 670

Query: 696 FKDGNCSCNDYW 707
           F DG CSC DYW
Sbjct: 671 FTDGLCSCKDYW 682


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 302/676 (44%), Positives = 427/676 (63%), Gaps = 44/676 (6%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIE-ICAVSPFGDLSYALLVFETIRE 92
           ++LL   T +  I Q+H+ IIKT L    F L+KL+  + A S   DL YA  VF+ I  
Sbjct: 7   MSLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPS 66

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVP-NTYTFPFILKSCAKISAISEGKQ 151
           P+  IWN +IR +  S +P  ++  + +M     +P ++Y+   ++++C ++     G++
Sbjct: 67  PDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQK 126

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +H  VLK+GL SD FV T+LI MYA+ G++E AR + ++ +  D V Y  L+  Y   G 
Sbjct: 127 LHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGE 186

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
           ++ A  LFD MP R+                        L +W                 
Sbjct: 187 INLAHDLFDRMPERD------------------------LVSW----------------- 205

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N +I  ++  GD+  A+ LF+   +RD+ISW+ MI  Y       EAL LF +M  +N+ 
Sbjct: 206 NTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVL 265

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+ VT +SVL AC  +GAL +GK IH  I++N  +++ + L TSL+DMYAKCG+I  + +
Sbjct: 266 PDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEID-LKLGTSLVDMYAKCGDIDNSLR 324

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VF+GM  + + +W+AMI GLA HG  + AL  FS+MI E ++P+D+TF+GVLSAC+H GL
Sbjct: 325 VFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGL 384

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           +D G  YF +M + Y +SPK++HYGC+VD+LGRAG   EA  L+K+M   PDA +W +LL
Sbjct: 385 VDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALL 444

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
           GACR++  +E+ E    +LLELEP   G YVLLSN+Y+ A  WD V  +R  + +  ++K
Sbjct: 445 GACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRRMMKNINIQK 504

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
           VPG SSIEV + VHEF+ GD+ HP+SK I  ML EI A L+ +G+ P T+ VL D DE+ 
Sbjct: 505 VPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEITARLKANGYAPLTASVLQDFDEKE 564

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           KE AL+HHSEKLAIA+GL+ST PG+TIRIVKNLRVC +CH A KLIS+ + R II RDRN
Sbjct: 565 KENALAHHSEKLAIAFGLLSTAPGSTIRIVKNLRVCDDCHIAIKLISRTYKRRIIVRDRN 624

Query: 692 RFHHFKDGNCSCNDYW 707
           RFHHF +G+CSC DYW
Sbjct: 625 RFHHFVNGSCSCKDYW 640


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 286/673 (42%), Positives = 432/673 (64%), Gaps = 11/673 (1%)

Query: 43  MQNIKQVHSQIIKTGLHNT-----QFALSKLIEICAVSPFGDLSYALLVFETIREPNQVI 97
           ++++ Q+H+ ++K+G   T        L         +    LSYA+ +F     P +  
Sbjct: 76  LRDVPQLHATLLKSGAMTTSPDSFHSLLEAAALPAPATSSAHLSYAIRLFRLGPHPPRSA 135

Query: 98  --WNNIIRGHSLSSSPVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQIHA 154
             +N +IR    +  P  A+  +V M+    V P+ +T    +KSC+++  +S G+ + A
Sbjct: 136 RSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQA 195

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
           +  K G   D FV  SLI+MYA  G++ +A ++F+   ++  +++ A+I GY   G   +
Sbjct: 196 YAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKE 255

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274
             ++F  M      F  +E T+++V +AC  +G   LG W+    E  G+  + ++  AL
Sbjct: 256 VVEMFKGMLEVRAPF--DEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATAL 313

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
           +DMY+KCG+L KAR LF+ +  RDV++W+ MI GYT +   +EAL +F +M  + + PND
Sbjct: 314 VDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPND 373

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           VT +SVL ACA LGAL+ GKW+H+YI +    L  V L T+L+D YAKCG IK A + F+
Sbjct: 374 VTMVSVLSACAVLGALETGKWVHSYIRRKDLPLT-VILGTALVDFYAKCGCIKDAVKAFE 432

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
            M  +   +W A+I G+A +G++ +AL LFS M+   ++P D+TF+GVL AC+H  L++ 
Sbjct: 433 SMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEE 492

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
           GR++F +M QDY I P+++HYGCMVDLLGRAGL DEA   ++ M ++P+A +W +LL AC
Sbjct: 493 GRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSAC 552

Query: 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPG 574
            VH  +E+GE   K ++ L+P + G Y+LLSN YA  G+W + A +R  + +KG++K+PG
Sbjct: 553 TVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPG 612

Query: 575 CSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEG 634
           CS IE+   + EF   D  HPQ   IYE + E+   ++  G++P+T++   D+DE  K+ 
Sbjct: 613 CSLIELEGTIFEFFAEDSEHPQLTEIYEKVHEMIENIKMVGYIPNTADARLDVDEYEKQV 672

Query: 635 ALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFH 694
           ++SHHSEKLAIA+GL+ ++PG TIR+ KNLRVC +CHSATKLISK++NREII RDRNRFH
Sbjct: 673 SVSHHSEKLAIAFGLMKSRPGATIRLSKNLRVCIDCHSATKLISKVYNREIIVRDRNRFH 732

Query: 695 HFKDGNCSCNDYW 707
           HFKDG CSCNDYW
Sbjct: 733 HFKDGLCSCNDYW 745


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 300/670 (44%), Positives = 434/670 (64%), Gaps = 21/670 (3%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEI---CAVSPFGDLSYALLVFETIREPNQVIWNNIIR 103
           K++H  ++K GL    F  + L+ +   CA      + YA LVF+ + E + V W+ +IR
Sbjct: 114 KEIHGFVLKKGLDRDVFVGNALMLMYGECAC-----VEYARLVFDKMMERDVVSWSTMIR 168

Query: 104 GHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLK----- 158
             S +    +A++    M      P+      ++   A  + +  GK +HA+V++     
Sbjct: 169 SLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNE 228

Query: 159 -LGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ 217
            +G+ +     T+L++MYA+ G L  AR +FN  + +  VS+TA+I G      L++  +
Sbjct: 229 HMGVPTT----TALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTK 284

Query: 218 LFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDM 277
           LF  M  +EEN  PNE T+++++  C   G+L+LG  + + I  +G   +L +  AL+DM
Sbjct: 285 LFIRM--QEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDM 342

Query: 278 YSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTF 337
           Y KC D+  AR LF+S + RDV+ W  M+  Y   +   +A  LF QM  S + P  VT 
Sbjct: 343 YGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTI 402

Query: 338 LSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG 397
           +S+L  CA  GALDLGKW+H+YIDK   +++ + L T+L+DMYAKCG+I AA ++F    
Sbjct: 403 VSLLSLCAVAGALDLGKWVHSYIDKERVEVDCI-LNTALVDMYAKCGDINAAGRLFIEAI 461

Query: 398 YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
            + +  WNA+I+G AMHG  ++AL +F+ M  +G++P+DITF+G+L AC+HAGL+  G++
Sbjct: 462 SRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKK 521

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
            F  M+  + + P+++HYGCMVDLLGRAGL DEA  ++K+M +KP+  +W +L+ ACR+H
Sbjct: 522 LFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLH 581

Query: 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577
              +LGE  A  LLE+EPEN G  VL+SN+YA A RW D A +R  +   GMKK PG S 
Sbjct: 582 KNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSV 641

Query: 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALS 637
           IEV   VHEFL+GD+ HPQ + I EML E+   L ++G+VPDTS VL ++DEE KE AL+
Sbjct: 642 IEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALT 701

Query: 638 HHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFK 697
           +HSEKLA+A+GLIST P T IRIVKNLRVC +CH+ATKL+SKI+ R II RDRNRFHHF+
Sbjct: 702 YHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFR 761

Query: 698 DGNCSCNDYW 707
           +G CSC DYW
Sbjct: 762 EGYCSCGDYW 771



 Score =  229 bits (584), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 137/411 (33%), Positives = 226/411 (54%), Gaps = 16/411 (3%)

Query: 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK 190
           +  P +LK+C ++S    GK+IH  VLK GL+ D FV  +L+ MY +   +E ARLVF+K
Sbjct: 95  FMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDK 154

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV---PNESTVVTVLSACAHMG 247
              RD VS++ +I   +     D A +L     IRE NF+   P+E  +V++++  A   
Sbjct: 155 MMERDVVSWSTMIRSLSRNKEFDMALEL-----IREMNFMQVRPSEVAMVSMVNLFADTA 209

Query: 248 SLELGNWVCSLIEGHGLGSNLHV--TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVM 305
           ++ +G  + + +  +    ++ V  T AL+DMY+KCG L  AR LF  + ++ V+SW  M
Sbjct: 210 NMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAM 269

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365
           I G   ++  +E   LF +M + NI PN++T LS++  C + GAL LGK +HAYI +N  
Sbjct: 270 IAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGF 329

Query: 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
            + +++L T+L+DMY KC +I+ A  +FD    + +  W AM+S  A     D+A +LF 
Sbjct: 330 SV-SLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFD 388

Query: 426 RMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485
           +M   G++P  +T V +LS C  AG LD+G+ + ++ I   ++         +VD+  + 
Sbjct: 389 QMRTSGVRPTKVTIVSLLSLCAVAGALDLGK-WVHSYIDKERVEVDCILNTALVDMYAKC 447

Query: 486 GLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536
           G  + A  L     +  D  +W +++    +HG    GE       E+E +
Sbjct: 448 GDINAAGRLF-IEAISRDICMWNAIITGFAMHG---YGEEALDIFAEMERQ 494


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 306/708 (43%), Positives = 431/708 (60%), Gaps = 37/708 (5%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L  + +CTN   +KQ+H+ +++T      +  SKL+   A+S    L YA  VF  I +P
Sbjct: 76  LEFIDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQP 135

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILS-GFVPNTYTFPFILKSCAKISAISEGKQI 152
           N   WN +IRG++ SS P  +   ++ M+ S    PN +TFPF+ K+ +++  +  G  +
Sbjct: 136 NLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVL 195

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H  V+K  L SD F+  SLIN Y  +G  + A  VF     +D VS+ A+I  +A  G  
Sbjct: 196 HGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLP 255

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           D A  LF EM +++    PN  T+V+VLSACA    LE G W+CS IE +G   +L + N
Sbjct: 256 DKALLLFQEMEMKDVK--PNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNN 313

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA-------------- 318
           A++DMY KCG +  A+DLF  + ++D++SW  M+ G+    +Y EA              
Sbjct: 314 AMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAA 373

Query: 319 -----------------LMLFRQM-LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
                            L LF +M L  + +P++VT +  L A A LGA+D G WIH YI
Sbjct: 374 WNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYI 433

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
            K+   LN   L TSL+DMYAKCGN+  A +VF  +  K +  W+AMI  LAM+G+   A
Sbjct: 434 KKHDINLN-CHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAA 492

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
           L LFS M+   ++P+ +TF  +L ACNHAGL++ G Q F  M   Y I P++QHY C+VD
Sbjct: 493 LDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVD 552

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540
           + GRAGL ++A + ++ M + P AA+W +LLGAC  HG +EL E   ++LLELEP N GA
Sbjct: 553 IFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCNHGA 612

Query: 541 YVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHI 600
           +VLLSN+YA AG W+ V+ +R  + D  +KK P CSSI+V  +VHEFLVGD  HP S+ I
Sbjct: 613 FVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFSQKI 672

Query: 601 YEMLDEIDALLEKSGFVPDTSEVLYDMDEE-WKEGALSHHSEKLAIAYGLISTKPGTTIR 659
           Y  LDEI    +  G+ PD S +L   +E+   E +L+ HSEKLAIA+GLIST     IR
Sbjct: 673 YSKLDEISEKFKPIGYKPDMSNLLQLSEEDNLMEQSLNVHSEKLAIAFGLISTASSQPIR 732

Query: 660 IVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           IVKN+R+CG+CH+  KL+S++++R+I+ RDR RFHHF+ G CSC DYW
Sbjct: 733 IVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFHHFRGGKCSCLDYW 780


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  592 bits (1527), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 298/680 (43%), Positives = 427/680 (62%), Gaps = 17/680 (2%)

Query: 37  LSKC-----TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           L KC      ++   KQ H  +++ GLH   + ++ L+   +   F    YA +VF    
Sbjct: 5   LKKCFAWGLKSLHQAKQCHCLLLRLGLHQDTYLINLLLR--SSLHFAATQYATVVFAQTP 62

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS-AISEGK 150
            PN  ++N +IRG   + +   A+  Y  M   GF P+ +TFPF+LK+C ++      G 
Sbjct: 63  HPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGL 122

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            +H+ V+K G + D FV T L+ +Y++NG L  AR VF++   ++ VS+TA+I GY   G
Sbjct: 123 SLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESG 182

Query: 211 YLDDARQLFD---EMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
              +A  LF    EM +R ++F     T+V +L AC+ +G L  G W+   +   G   N
Sbjct: 183 CFGEALGLFRGLLEMGLRPDSF-----TLVRILYACSRVGDLASGRWIDGYMRESGSVGN 237

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
           + V  +L+DMY+KCG + +AR +F+ + ++DV+ W+ +I GY      KEAL +F +M +
Sbjct: 238 VFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQR 297

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
            N+ P+    + V  AC+ LGAL+LG W    +D + + L+N  L T+LID YAKCG++ 
Sbjct: 298 ENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGD-EFLSNPVLGTALIDFYAKCGSVA 356

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
            A++VF GM  K    +NA+ISGLAM G    A  +F +M+  G+QPD  TFVG+L  C 
Sbjct: 357 QAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCT 416

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
           HAGL+D G +YF+ M   + ++P ++HYGCMVDL  RAGL  EA+ L+++M M+ ++ +W
Sbjct: 417 HAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVW 476

Query: 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
            +LLG CR+H   +L E V K L+ELEP N G YVLLSN+Y+ + RWD+   IR+ LN K
Sbjct: 477 GALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQK 536

Query: 568 GMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
           GM+K+PGCS +EV  VVHEFLVGD  HP S  IYE L+ +   L ++G+ P T  VL+D+
Sbjct: 537 GMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLESLFKDLREAGYNPTTEFVLFDV 596

Query: 628 DEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIA 687
           +EE KE  L  HSEKLA+A+ LIST     IR+VKNLRVCG+CH A KL+SK+  REII 
Sbjct: 597 EEEEKEYFLGCHSEKLAVAFALISTGAKDVIRVVKNLRVCGDCHEAIKLVSKVTGREIIV 656

Query: 688 RDRNRFHHFKDGNCSCNDYW 707
           RD NRFHHF +G+CSC DYW
Sbjct: 657 RDNNRFHHFTEGSCSCRDYW 676


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  592 bits (1527), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 296/662 (44%), Positives = 431/662 (65%), Gaps = 7/662 (1%)

Query: 47   KQVHSQIIKTGLHNTQFAL-SKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
            K VHS I+  G H +  A+ + L+++ A    G       VFE +   + + WN +I G 
Sbjct: 365  KTVHSHILNAG-HESDLAVGTALVKMYA--KCGSYKDCRQVFEKLVNRDLIAWNTMIGGL 421

Query: 106  SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
            +   +   A + Y +M   G +PN  T+  +L +C   +A+  G++IH+ V+K G   D 
Sbjct: 422  AEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDI 481

Query: 166  FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
             V  +LI+MYA+ G ++ ARL+FNK   +D +S+TA+I G A  G   +A  +F +M  +
Sbjct: 482  SVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDM--Q 539

Query: 226  EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
            +    PN  T  ++L+AC+   +L+ G  +   +   GL ++ HV N L++MYS CG + 
Sbjct: 540  QAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVK 599

Query: 286  KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
             AR +F+ + +RD++++N MIGGY   +  KEAL LF ++ +  ++P+ VT++++L ACA
Sbjct: 600  DARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACA 659

Query: 346  YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
              G+L+  K IH+ + K+   L++ SL  +L+  YAKCG+   A  VFD M  + + SWN
Sbjct: 660  NSGSLEWAKEIHSLVLKDGY-LSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWN 718

Query: 406  AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
            A+I G A HG+    L LF RM  EG++PD +TFV +LSAC+HAGLL+ GR+YF +M +D
Sbjct: 719  AIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRD 778

Query: 466  YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
            + I+P ++HYGCMVDLLGRAG  DE EAL+KTM  + +  IW +LLGACR+HG + + E 
Sbjct: 779  FGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAER 838

Query: 526  VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVH 585
             A+  L+L+P+N   YV LS+MYA AG WD  A +R  +  +G+ K PG S IEVG  +H
Sbjct: 839  AAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLH 898

Query: 586  EFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAI 645
             F+  D+ HP+S+ IY  LD++   ++  G+VPDT  V++D+DE  KE A+ HHSE+LAI
Sbjct: 899  YFVAEDRSHPESEKIYAELDKLTHAMKMEGYVPDTRSVMHDVDEGEKENAVCHHSERLAI 958

Query: 646  AYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCND 705
            AYGLIST PGT IRI KNLRVC +CH+ATK I+KI +REI+ARD NRFHHFKDG CSC D
Sbjct: 959  AYGLISTLPGTPIRIFKNLRVCPDCHTATKFITKIVDREIVARDVNRFHHFKDGVCSCGD 1018

Query: 706  YW 707
            YW
Sbjct: 1019 YW 1020



 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 169/575 (29%), Positives = 287/575 (49%), Gaps = 25/575 (4%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           + +L +C  ++++   ++VH  II+      Q+ ++ LI +      G +  A  V+  +
Sbjct: 145 MKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINM--YIQCGSIEEARQVWNKL 202

Query: 91  REPNQVI--WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE 148
               + +  WN ++ G+        A+K    M   G      T   +L SC   SA+  
Sbjct: 203 NHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALEC 262

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           G++IH   +K  L  D  V   ++NMYA+ G +  AR VF+K   +  VS+T +I GYA 
Sbjct: 263 GREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYAD 322

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
            G+ + A ++F +M  ++E  VPN  T + VL+A +   +L+ G  V S I   G  S+L
Sbjct: 323 CGHSEIAFEIFQKM--QQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDL 380

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
            V  AL+ MY+KCG     R +FE +  RD+I+WN MIGG     +++EA  ++ QM + 
Sbjct: 381 AVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQRE 440

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            + PN +T++ +L AC    AL  G+ IH+ + K+   + ++S+  +LI MYA+CG+IK 
Sbjct: 441 GMMPNKITYVILLNACVNPTALHWGREIHSRVVKD-GFMFDISVQNALISMYARCGSIKD 499

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A  +F+ M  K + SW AMI GLA  G   +AL++F  M   GL+P+ +T+  +L+AC+ 
Sbjct: 500 ARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSS 559

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
              LD GR+    +I+   ++        +V++    G   +A  +   M  + D   + 
Sbjct: 560 PAALDWGRRIHQQVIE-AGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQR-DIVAYN 617

Query: 509 SLLGACRVHGRLELGESVAKHLLELEPE----NPGAYVLLSNMYAGAGRWDDVATIRT-- 562
           +++G    H    LG+   K    L+ E    +   Y+ + N  A +G  +    I +  
Sbjct: 618 AMIGGYAAH---NLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLV 674

Query: 563 ----RLNDKGMKKVPGCSSIEVGSVVHEFLVGDKV 593
                L+D  +      +  + GS     LV DK+
Sbjct: 675 LKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKM 709



 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 165/605 (27%), Positives = 302/605 (49%), Gaps = 66/605 (10%)

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
           G   N+  +  +LK C ++  +  G+++H H+++     D +   +LINMY Q G +E A
Sbjct: 136 GARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEA 195

Query: 185 RLVFNK--SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSA 242
           R V+NK   + R   S+ A++ GY   GY+++A +L  EM  ++       +T + +LS+
Sbjct: 196 RQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREM--QQHGLALGRATTMRLLSS 253

Query: 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
           C    +LE G  +        L  +++V N +++MY+KCG + +AR++F+ +E + V+SW
Sbjct: 254 CKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSW 313

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI-D 361
            ++IGGY      + A  +F++M Q  + PN +T+++VL A +   AL  GK +H++I +
Sbjct: 314 TIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILN 373

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421
             H+  +++++ T+L+ MYAKCG+ K   QVF+ +  + L +WN MI GLA  G  ++A 
Sbjct: 374 AGHE--SDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEAS 431

Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD---YKISPK------- 471
            ++ +M  EG+ P+ IT+V +L+AC +   L  GR+  + +++D   + IS +       
Sbjct: 432 EIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMY 491

Query: 472 --------------------LQHYGCMVDLLGRAGLFDEAEALLKTME---MKPDAAIWT 508
                               +  +  M+  L ++GL  EA A+ + M+   +KP+   +T
Sbjct: 492 ARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYT 551

Query: 509 SLLGACRVHGRLELGESVAKHLLE--LEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
           S+L AC     L+ G  + + ++E  L  +   A  L+ NMY+  G   D   +  R+  
Sbjct: 552 SILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLV-NMYSMCGSVKDARQVFDRMTQ 610

Query: 567 KGMKKVPGCSSIEVGSVVHEFLVGD-KVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLY 625
           + +             V +  ++G    H   K   ++ D     L++ G  PD    + 
Sbjct: 611 RDI-------------VAYNAMIGGYAAHNLGKEALKLFDR----LQEEGLKPDKVTYIN 653

Query: 626 DMDEEWKEGALSHHSE--KLAIAYGLIS-TKPGTTIRIVKNLRVCGNCHSATKLISKIFN 682
            ++     G+L    E   L +  G +S T  G    +V     CG+   A  +  K+  
Sbjct: 654 MLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNA--LVSTYAKCGSFSDALLVFDKMMK 711

Query: 683 REIIA 687
           R +I+
Sbjct: 712 RNVIS 716


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  592 bits (1527), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 289/623 (46%), Positives = 415/623 (66%), Gaps = 25/623 (4%)

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
             S P  A+  Y  M       +++  P +LK+C++IS    GK+IH   +K GL SD F
Sbjct: 86  FESHPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVF 145

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSY----------------------TALIT 204
           V  +L+ MY++ G L SARL+F+K S RD VS+                      TA+I 
Sbjct: 146 VVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIA 205

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
           GY     L++  +LF  M   EEN  PN+ T+++++ +C  +G+++LG  + + I  +G 
Sbjct: 206 GYIRCNDLEEGERLFVRMI--EENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGF 263

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
           G +L +  AL+DMY KCG++  AR +F+S++ +DV++W  MI  Y   +    A  LF Q
Sbjct: 264 GMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQ 323

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           M  + + PN++T +S+L  CA  GALD+GKW HAYIDK   +++ V L T+LIDMYAKCG
Sbjct: 324 MRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVD-VILKTALIDMYAKCG 382

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
           +I  A+++F     + + +WN M++G  MHG  +KAL LF+ M   G++P+DITF+G L 
Sbjct: 383 DISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALH 442

Query: 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504
           AC+HAGL+  G+  F  MI D+ + PK++HYGCMVDLLGRAGL DEA  ++++M + P+ 
Sbjct: 443 ACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNI 502

Query: 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564
           AIW ++L AC++H    +GE  A+ LL LEP+N G  VL+SN+YA A RW+DVA +R  +
Sbjct: 503 AIWGAMLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAV 562

Query: 565 NDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVL 624
            D G+KK PG SSIEV  +VH+F +GD  HP  + I EML E+   L+++G++PDTS VL
Sbjct: 563 KDTGIKKEPGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPDTSVVL 622

Query: 625 YDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNRE 684
           +++DEE KE AL++HSEKLA+A+GLIST PGT IR+VKNLR+C +CH+ TKL+SKI+ R 
Sbjct: 623 HNIDEEEKETALNYHSEKLAMAFGLISTAPGTPIRVVKNLRICDDCHTVTKLLSKIYKRV 682

Query: 685 IIARDRNRFHHFKDGNCSCNDYW 707
           II RDRNRFHHF++G+CSC  YW
Sbjct: 683 IIVRDRNRFHHFREGSCSCGGYW 705



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 121/395 (30%), Positives = 214/395 (54%), Gaps = 27/395 (6%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH- 105
           K++H   +K GL +  F ++ L+++   S  G L  A L+F+ + E + V W+ +IR + 
Sbjct: 129 KEIHGFSVKNGLVSDVFVVNALMQM--YSECGSLVSARLLFDKMSERDVVSWSTMIRAYI 186

Query: 106 ----SLSSSPVVAI-----------------KFYVRMILSGFVPNTYTFPFILKSCAKIS 144
                 S   +V+                  + +VRMI     PN  T   ++ SC  + 
Sbjct: 187 TLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVG 246

Query: 145 AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
           A+  GK++HA++L+ G      + T+L++MY + GE+ SAR +F+    +D +++TA+I+
Sbjct: 247 AVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMIS 306

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
            YA    +D A QLF +M  R+    PNE T+V++LS CA  G+L++G W  + I+  G+
Sbjct: 307 AYAQANCIDYAFQLFVQM--RDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGV 364

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
             ++ +  ALIDMY+KCGD+  A+ LF     RD+ +WNVM+ GY      ++AL LF +
Sbjct: 365 EVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTE 424

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           M    ++PND+TF+  L AC++ G +  GK +   +  +   +  V  +  ++D+  + G
Sbjct: 425 METLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAG 484

Query: 385 NIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKAD 418
            +  A ++ + M     +A W AM++   +H  ++
Sbjct: 485 LLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSN 519


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 301/667 (45%), Positives = 423/667 (63%), Gaps = 42/667 (6%)

Query: 41  TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNN 100
           T++ ++KQVH+  ++TG     +    L++  A   F +L++AL VFE +  PN  ++N 
Sbjct: 41  TSLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNI 100

Query: 101 IIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG 160
           II+G   ++ P  AI  Y +M+++   PN +T+P + K+C    A  EG Q+HAHV+K G
Sbjct: 101 IIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQG 160

Query: 161 LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD 220
           L  D  + ++ I MY   GE+E AR +  +    D + + A+I GY   G ++ A++LF 
Sbjct: 161 LSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFW 220

Query: 221 EMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK 280
            M  +                         +G+W                 N ++   +K
Sbjct: 221 SMEDKN------------------------VGSW-----------------NVMVSGMAK 239

Query: 281 CGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSV 340
           CG + +AR+LF  +++++ ISW+ MI GY     YKEAL +F  M +  I P      SV
Sbjct: 240 CGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSV 299

Query: 341 LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT 400
           L ACA LGALD G+WIHAY++ N    + V L T+L+DMYAKCG +  A  VF+ M  K 
Sbjct: 300 LAACANLGALDQGRWIHAYVNNNSNSFDAV-LGTALVDMYAKCGRLDMAWDVFEKMEKKE 358

Query: 401 LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFN 460
           + +WNAMI GL MHG+A+ A+ LF +M  +  +P+ IT +GVLSAC H+G++D G + FN
Sbjct: 359 VFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFN 418

Query: 461 AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRL 520
           +M + Y I P ++HYGC+VDLLGRAGL  EAE ++ +M M+P AA+W +LLGACR HG +
Sbjct: 419 SMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDV 478

Query: 521 ELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEV 580
           ELGE V K LLELEP+N G Y LLSN+YA AGRWDDVA +R  + ++G+K   G S I+ 
Sbjct: 479 ELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDF 538

Query: 581 GSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHS 640
             VVHEF +GD  HPQ K+IY ML  +   L+  GF P+TS+VL+D++EE KE  L +HS
Sbjct: 539 DGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKMEGFSPNTSQVLFDIEEEEKEAELQYHS 598

Query: 641 EKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGN 700
           EKLAIA+GLI+TKPGTTI +VKNLR+C +CHSA KLIS++++REII RDR R+HHFK G 
Sbjct: 599 EKLAIAFGLINTKPGTTIHVVKNLRMCEDCHSAFKLISQVYDREIIVRDRARYHHFKTGT 658

Query: 701 CSCNDYW 707
           CSC D+W
Sbjct: 659 CSCKDFW 665


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 309/707 (43%), Positives = 434/707 (61%), Gaps = 45/707 (6%)

Query: 37  LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKL-IEICAVSPFGDLSYALLVFETIREPNQ 95
           LS  T++ ++KQVH+QI+++ L  +   L KL I  CA+S    L YAL VF  I +P  
Sbjct: 30  LSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALS--SSLDYALSVFNLIPKPET 87

Query: 96  VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAH 155
            + N  +R  S S  P   +  Y RM   G   + ++FP +LK+ +++ ++ EG +IH  
Sbjct: 88  HLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGL 147

Query: 156 VLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDA 215
             KLG +SDPFV T L+ MYA  G +  ARL+F+K   RD V+++ +I GY   G  +DA
Sbjct: 148 AAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDA 207

Query: 216 RQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALI 275
             LF+EM  +  N  P+E  + TVLSAC   G+L  G  +   I  + +  + H+ +AL+
Sbjct: 208 LLLFEEM--KNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALV 265

Query: 276 DMYSKCGDLVKARDLFESIE-------------------------------KRDVISWNV 304
            MY+ CG +  A +LFE +                                K+D++ W+ 
Sbjct: 266 TMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSA 325

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN- 363
           MI GY  +   +EAL LF +M    I+P+ VT LSV+ ACA+LGALD  KWIH ++DKN 
Sbjct: 326 MISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNG 385

Query: 364 ---HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
                 +NN     +LI+MYAKCG+++ A ++FD M  K + SW  MIS  AMHG A  A
Sbjct: 386 FGGALPINN-----ALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSA 440

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
           L  F +M  E ++P+ ITFVGVL AC+HAGL++ GR+ F +MI ++ I+PK  HYGCMVD
Sbjct: 441 LRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVD 500

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540
           L GRA L  EA  L++ M + P+  IW SL+ ACRVHG +ELGE  AK LLEL+P++ GA
Sbjct: 501 LFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGA 560

Query: 541 YVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHI 600
           +V LSN+YA A RW+DV  +R  +  KG+ K  GCS  E+ + +HEFLV D+ H  +  I
Sbjct: 561 HVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHADEI 620

Query: 601 YEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRI 660
           YE L E+ + L+  G+ P+T  +L D++EE K+  +  HSEKLA+ YGL+    G+ IRI
Sbjct: 621 YEKLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHSEKLALCYGLMRDGTGSCIRI 680

Query: 661 VKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +KNLRVC +CH+  KL SK++ REI+ RDR RFHH+KDG CSC DYW
Sbjct: 681 IKNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCSCKDYW 727


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  590 bits (1520), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 311/740 (42%), Positives = 447/740 (60%), Gaps = 74/740 (10%)

Query: 4   PPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQF 63
           P S+L  +P+ L  PP+S   + L             + ++  KQ+H+ IIKT  H+   
Sbjct: 30  PHSTLKFNPTPLQTPPTSPSQHDL-------------STLEQTKQIHAHIIKTHFHHA-- 74

Query: 64  ALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMIL 123
                ++I    P  D    L        P+   WN +I  ++  + P  A+  Y ++  
Sbjct: 75  -----LQI----PLNDFPSGL-------SPS-AQWNFVITSYTKRNQPRNALNVYAQLRK 117

Query: 124 SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELES 183
             F  + +  P +LK+C ++S    GK+IH  VLK GL+ D FV  +L+ MY +   +E 
Sbjct: 118 MDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEY 177

Query: 184 ARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV---PNESTVVTVL 240
           ARLVF+K   RD VS++ +I   +     D A +L     IRE NF+   P+E  +V+++
Sbjct: 178 ARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALEL-----IREMNFMQVRPSEVAMVSMV 232

Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNLHV--TNALIDMYSKCG---------------- 282
           +  A   ++ +G  + + +  +    ++ V  T AL+DMY+KCG                
Sbjct: 233 NLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKT 292

Query: 283 ---------------DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
                           L +AR LF+S + RDV+ W  M+  Y   +   +A  LF QM  
Sbjct: 293 VVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRT 352

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
           S + P  VT +S+L  CA  GALDLGKW+H+YIDK   +++ + L T+L+DMYAKCG+I 
Sbjct: 353 SGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCI-LNTALVDMYAKCGDIN 411

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
           AA ++F     + +  WNA+I+G AMHG  ++AL +F+ M  +G++P+DITF+G+L AC+
Sbjct: 412 AAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACS 471

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
           HAGL+  G++ F  M+  + + P+++HYGCMVDLLGRAGL DEA  ++K+M +KP+  +W
Sbjct: 472 HAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVW 531

Query: 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
            +L+ ACR+H   +LGE  A  LLE+EPEN G  VL+SN+YA A RW D A +R  +   
Sbjct: 532 GALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTV 591

Query: 568 GMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
           GMKK PG S IEV   VHEFL+GD+ HPQ + I EML E+   L ++G+VPDTS VL ++
Sbjct: 592 GMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNI 651

Query: 628 DEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIA 687
           DEE KE AL++HSEKLA+A+GLIST P T IRIVKNLRVC +CH+ATKL+SKI+ R II 
Sbjct: 652 DEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIV 711

Query: 688 RDRNRFHHFKDGNCSCNDYW 707
           RDRNRFHHF++G CSC DYW
Sbjct: 712 RDRNRFHHFREGYCSCGDYW 731


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  589 bits (1519), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 295/661 (44%), Positives = 424/661 (64%), Gaps = 5/661 (0%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K VHS+I+  G  +     + L+++ A    G       VFE +   + + WN +I G +
Sbjct: 247 KAVHSRILNAGHESDTAVGTALVKMYA--KCGSYKDCRQVFEKLVNRDLIAWNTMIGGLA 304

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
                  A + Y +M   G +PN  T+  +L +C   +A+  GK+IH+ V K G  SD  
Sbjct: 305 EGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIG 364

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V  +LI+MY++ G ++ ARLVF+K   +D +S+TA+I G A  G+  +A  ++ EM  ++
Sbjct: 365 VQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEM--QQ 422

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
               PN  T  ++L+AC+   +LE G  +   +   GL ++ HV N L++MYS CG +  
Sbjct: 423 AGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKD 482

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           AR +F+ + +RD++++N MIGGY   +  KEAL LF ++ +  ++P+ VT++++L ACA 
Sbjct: 483 ARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACAN 542

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
            G+L+  + IH  + K     ++ S+  +L+  YAKCG+   A  VF+ M  + + SWNA
Sbjct: 543 SGSLEWAREIHTLVRKG-GFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNA 601

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
           +I G A HG+   AL LF RM  EG++PD +TFV +LSAC+HAGLL+ GR+YF +M QD+
Sbjct: 602 IIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDF 661

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
            I P ++HYGCMVDLLGRAG  DEAEAL+KTM  + +  IW +LLGACR+HG + + E  
Sbjct: 662 AIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERA 721

Query: 527 AKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHE 586
           A+  L+L+ +N   YV LS+MYA AG WD  A +R  +  +G+ K PG S I+VG  +H 
Sbjct: 722 AESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHY 781

Query: 587 FLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIA 646
           F+  D+ HPQS+ IY  LD +   ++  G+VPDT  V++D+DE  KE A+ HHSE+LAIA
Sbjct: 782 FVAEDRSHPQSEKIYAELDRLTHAMKMKGYVPDTRSVMHDVDEGEKENAVCHHSERLAIA 841

Query: 647 YGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDY 706
           YGLIST PGT I I KNLRVC +CH+ATK ISKI +REIIARD NRFHHFKDG CSC DY
Sbjct: 842 YGLISTPPGTRIHIFKNLRVCPDCHTATKFISKIVDREIIARDVNRFHHFKDGVCSCGDY 901

Query: 707 W 707
           W
Sbjct: 902 W 902



 Score =  275 bits (702), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 154/489 (31%), Positives = 271/489 (55%), Gaps = 10/489 (2%)

Query: 34  LALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           ++ LS C +   ++  +++H Q ++ GL       + ++ + A    G +  A  VF+ +
Sbjct: 130 MSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYA--KCGSIEEAREVFDKM 187

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            + + V W   I G++       A + + +M   G VPN  T+  +L + +  +A+  GK
Sbjct: 188 EKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGK 247

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            +H+ +L  G ESD  V T+L+ MYA+ G  +  R VF K   RD +++  +I G A  G
Sbjct: 248 AVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGG 307

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
           Y ++A +++++M  + E  +PN+ T V +L+AC +  +L  G  + S +   G  S++ V
Sbjct: 308 YWEEASEVYNQM--QREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGV 365

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            NALI MYS+CG +  AR +F+ + ++DVISW  MIGG   +    EAL ++++M Q+ +
Sbjct: 366 QNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGV 425

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           EPN VT+ S+L AC+   AL+ G+ IH  + +      +  +  +L++MY+ CG++K A 
Sbjct: 426 EPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLA-TDAHVGNTLVNMYSMCGSVKDAR 484

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           QVFD M  + + ++NAMI G A H    +AL LF R+  EGL+PD +T++ +L+AC ++G
Sbjct: 485 QVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSG 544

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
            L+  R+  + +++             +V    + G F +A  + + M  K +   W ++
Sbjct: 545 SLEWARE-IHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKM-TKRNVISWNAI 602

Query: 511 LGACRVHGR 519
           +G    HGR
Sbjct: 603 IGGSAQHGR 611



 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 159/531 (29%), Positives = 261/531 (49%), Gaps = 43/531 (8%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           + +L +C  ++++   +QVH  II+      Q+ ++ LI +      G +  A  V++ +
Sbjct: 27  MKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINM--YIQCGSIEEARQVWKKL 84

Query: 91  REPNQVI--WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE 148
               + +  WN ++ G+        A+K   +M   G  P+  T    L SC    A+  
Sbjct: 85  SYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEW 144

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           G++IH   ++ GL  D  V   ++NMYA+ G +E AR VF+K   +  VS+T  I GYA 
Sbjct: 145 GREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYAD 204

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
            G  + A ++F +M   +E  VPN  T ++VL+A +   +L+ G  V S I   G  S+ 
Sbjct: 205 CGRSETAFEIFQKM--EQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDT 262

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
            V  AL+ MY+KCG     R +FE +  RD+I+WN MIGG      ++EA  ++ QM + 
Sbjct: 263 AVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQRE 322

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            + PN +T++ +L AC    AL  GK IH+ + K     +++ +  +LI MY++CG+IK 
Sbjct: 323 GVMPNKITYVILLNACVNSAALHWGKEIHSRVAKA-GFTSDIGVQNALISMYSRCGSIKD 381

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A  VFD M  K + SW AMI GLA  G   +AL+++  M   G++P+ +T+  +L+AC+ 
Sbjct: 382 ARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSS 441

Query: 449 AGLLDIGRQYFNAMIQ------------------------------DYKISPKLQHYGCM 478
              L+ GR+    +++                              D  I   +  Y  M
Sbjct: 442 PAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAM 501

Query: 479 VDLLGRAGLFDEAEALLKTME---MKPDAAIWTSLLGACRVHGRLELGESV 526
           +       L  EA  L   ++   +KPD   + ++L AC   G LE    +
Sbjct: 502 IGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREI 552



 Score =  238 bits (607), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 172/607 (28%), Positives = 298/607 (49%), Gaps = 70/607 (11%)

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
           G   N+  +  +LK C ++  +  G+Q+H H+++     D +   +LINMY Q G +E A
Sbjct: 18  GAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEA 77

Query: 185 RLVFNKSSL--RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSA 242
           R V+ K S   R   S+ A++ GY   GY++ A +L  +M  ++    P+ +T+++ LS+
Sbjct: 78  RQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQM--QQHGLAPDRTTIMSFLSS 135

Query: 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
           C   G+LE G  +       GL  ++ V N +++MY+KCG + +AR++F+ +EK+ V+SW
Sbjct: 136 CKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSW 195

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI-D 361
            + IGGY      + A  +F++M Q  + PN +T++SVL A +   AL  GK +H+ I +
Sbjct: 196 TITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILN 255

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421
             H+  ++ ++ T+L+ MYAKCG+ K   QVF+ +  + L +WN MI GLA  G  ++A 
Sbjct: 256 AGHE--SDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEAS 313

Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGLL-----------------DIGRQYFNAMIQ 464
            ++++M  EG+ P+ IT+V +L+AC ++  L                 DIG Q  NA+I 
Sbjct: 314 EVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQ--NALIS 371

Query: 465 DYK---------------ISPKLQHYGCMVDLLGRAGLFDEAEALLKTME---MKPDAAI 506
            Y                +   +  +  M+  L ++G   EA  + + M+   ++P+   
Sbjct: 372 MYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVT 431

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV--LLSNMYAGAGRWDDVATIRTRL 564
           +TS+L AC     LE G  + + ++E       A+V   L NMY+  G   D   +  R+
Sbjct: 432 YTSILNACSSPAALEWGRRIHQQVVEAGLATD-AHVGNTLVNMYSMCGSVKDARQVFDRM 490

Query: 565 NDKGMKKVPGCSSIEVGSVVHEFLVGD-KVHPQSKHIYEMLDEIDALLEKSGFVPDTSEV 623
                        I+   V +  ++G    H   K   ++ D     L++ G  PD    
Sbjct: 491 -------------IQRDIVAYNAMIGGYAAHNLGKEALKLFDR----LQEEGLKPDKVTY 533

Query: 624 LYDMDEEWKEGALSHHSE--KLAIAYGLIS-TKPGTTIRIVKNLRVCGNCHSATKLISKI 680
           +  ++     G+L    E   L    G  S T  G    +V     CG+   A+ +  K+
Sbjct: 534 INMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNA--LVSTYAKCGSFSDASIVFEKM 591

Query: 681 FNREIIA 687
             R +I+
Sbjct: 592 TKRNVIS 598



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 127/495 (25%), Positives = 218/495 (44%), Gaps = 42/495 (8%)

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
           ++++    N S  + +L  C  +  L  G  V   I  H    + +  NALI+MY +CG 
Sbjct: 14  LQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGS 73

Query: 284 LVKARDLFESIE--KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
           + +AR +++ +   +R V SWN M+ GY      ++AL L RQM Q  + P+  T +S L
Sbjct: 74  IEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFL 133

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
            +C   GAL+ G+ IH +       L +V +   +++MYAKCG+I+ A +VFD M  K++
Sbjct: 134 SSCKSPGALEWGREIH-FQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSV 192

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
            SW   I G A  G+++ A  +F +M  EG+ P+ IT++ VL+A +    L  G+   + 
Sbjct: 193 VSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSR 252

Query: 462 MIQ-----DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRV 516
           ++      D  +   L      V +  + G + +   + + + +  D   W +++G    
Sbjct: 253 ILNAGHESDTAVGTAL------VKMYAKCGSYKDCRQVFEKL-VNRDLIAWNTMIGGLAE 305

Query: 517 HGRLELGESVAKHL-LELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGC 575
            G  E    V   +  E    N   YV+L N    +        I +R+   G     G 
Sbjct: 306 GGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGV 365

Query: 576 SSI------EVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE 629
            +         GS+    LV DK+    K +      I   L KSGF  +   V  +M +
Sbjct: 366 QNALISMYSRCGSIKDARLVFDKM--VRKDVISWTAMIGG-LAKSGFGAEALTVYQEMQQ 422

Query: 630 EWKE-------GALSHHSEKLAIAYGL----------ISTKPGTTIRIVKNLRVCGNCHS 672
              E         L+  S   A+ +G           ++T       +V    +CG+   
Sbjct: 423 AGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKD 482

Query: 673 ATKLISKIFNREIIA 687
           A ++  ++  R+I+A
Sbjct: 483 ARQVFDRMIQRDIVA 497


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  587 bits (1512), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 305/671 (45%), Positives = 408/671 (60%), Gaps = 73/671 (10%)

Query: 37  LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQV 96
           L  C+ M  +KQ HSQII+ GL     A+ ++I+ CA+S  GDL+YAL VF+ I  P+  
Sbjct: 27  LDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAY 86

Query: 97  IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHV 156
           I+N I RG+         I  Y RM+     PN +T+P ++++C    AI EGKQIHAHV
Sbjct: 87  IYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHV 146

Query: 157 LKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDAR 216
           LK G  +D F                               S   LI  Y +   L+ AR
Sbjct: 147 LKFGFGADGF-------------------------------SLNNLIHMYVNFQSLEQAR 175

Query: 217 QLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALID 276
           ++FD MP R+         VV+               W  SLI G               
Sbjct: 176 RVFDNMPQRD---------VVS---------------WT-SLITG--------------- 195

Query: 277 MYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVT 336
            YS+ G + KAR++FE + +R+ +SWN MI  Y  ++   EA  LF +M   N+  +   
Sbjct: 196 -YSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFV 254

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
             S+L AC  LGAL+ GKWIH YI+K+  +L++  L T++IDMY KCG ++ A +VF+ +
Sbjct: 255 AASMLSACTGLGALEQGKWIHGYIEKSGIELDS-KLATTVIDMYCKCGCLEKASEVFNEL 313

Query: 397 GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR 456
             K ++SWN MI GLAMHGK + A+ LF  M  E + PD ITFV VLSAC H+GL++ G+
Sbjct: 314 PQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGK 373

Query: 457 QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRV 516
            YF  M +   + P ++H+GCMVDLLGRAGL +EA  L+  M + PDA +  +L+GACR+
Sbjct: 374 HYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRI 433

Query: 517 HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCS 576
           HG  ELGE + K ++ELEP N G YVLL+N+YA AGRW+DVA +R  +ND+G+KK PG S
Sbjct: 434 HGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFS 493

Query: 577 SIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGAL 636
            IE  S V EF+ G + HPQ+K IY  LDEI   +   G+VPDT  VL+D+DEE KE  L
Sbjct: 494 MIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPL 553

Query: 637 SHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHF 696
            +HSEKLAIA+GL+ TKPG T+RI KNLR+C +CH A+KLISK+++REII RDRNRFHHF
Sbjct: 554 YYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHF 613

Query: 697 KDGNCSCNDYW 707
           + G CSC DYW
Sbjct: 614 RMGGCSCKDYW 624


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  585 bits (1509), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 298/664 (44%), Positives = 423/664 (63%), Gaps = 9/664 (1%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           ++VH  ++K G H   F  + LI +   S  G L+ A L+F+ I   + V W+ +IR + 
Sbjct: 144 QEVHGFVVKNGFHGDVFVCNALIMM--YSEVGSLALARLLFDKIENKDVVSWSTMIRSYD 201

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL---KLGLES 163
            S     A+     M +    P+      I    A+++ +  GK +HA+V+   K G   
Sbjct: 202 RSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSG 261

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
            P   T+LI+MY +   L  AR VF+  S    +S+TA+I  Y     L++  +LF +M 
Sbjct: 262 VPLC-TALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKM- 319

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
              E   PNE T+++++  C   G+LELG  + +    +G   +L +  A IDMY KCGD
Sbjct: 320 -LGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGD 378

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           +  AR +F+S + +D++ W+ MI  Y   +   EA  +F  M    I PN+ T +S+L  
Sbjct: 379 VRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMI 438

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
           CA  G+L++GKWIH+YIDK   K  ++ L TS +DMYA CG+I  A ++F     + ++ 
Sbjct: 439 CAKAGSLEMGKWIHSYIDKQGIK-GDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISM 497

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
           WNAMISG AMHG  + AL LF  M   G+ P+DITF+G L AC+H+GLL  G++ F+ M+
Sbjct: 498 WNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMV 557

Query: 464 QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELG 523
            ++  +PK++HYGCMVDLLGRAGL DEA  L+K+M M+P+ A++ S L AC++H  ++LG
Sbjct: 558 HEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLG 617

Query: 524 ESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSV 583
           E  AK  L LEP   G  VL+SN+YA A RW DVA IR  + D+G+ K PG SSIEV  +
Sbjct: 618 EWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGL 677

Query: 584 VHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKL 643
           +HEF++GD+ HP +K +YEM+DE+   LE +G+ PD S VL+++D+E K  AL++HSEKL
Sbjct: 678 LHEFIMGDREHPDAKKVYEMIDEMREKLEDAGYTPDVSCVLHNIDKEKKVSALNYHSEKL 737

Query: 644 AIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSC 703
           A+AYGLIST PG  IRIVKNLRVC +CH+ATKL+SKI+ REII RDRNRFHHFK+G+CSC
Sbjct: 738 AMAYGLISTAPGVPIRIVKNLRVCDDCHNATKLLSKIYGREIIVRDRNRFHHFKEGSCSC 797

Query: 704 NDYW 707
            DYW
Sbjct: 798 CDYW 801



 Score =  246 bits (628), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 164/538 (30%), Positives = 267/538 (49%), Gaps = 34/538 (6%)

Query: 4   PPSSLTLS-PSILHFPPSSDPPYKLLQNQPSLAL----LSKCTNMQNIKQVHSQIIKTGL 58
           PPS L +S  S  +      P  K  Q+QP   +         N+   +Q+H   IKT  
Sbjct: 12  PPSPLPISIHSFQNTNQYHSPTLKFTQSQPKPNVPHIQQELHINLNETQQLHGHFIKTSS 71

Query: 59  HNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFY 118
           +      S  + + A+  +                N  I + +I  +  ++ P  A K Y
Sbjct: 72  N-----CSYRVPLAALESYSS--------------NAAIHSFLITSYIKNNCPADAAKIY 112

Query: 119 VRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN 178
             M  +    + +  P +LK+C  I +   G+++H  V+K G   D FV  +LI MY++ 
Sbjct: 113 AYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEV 172

Query: 179 GELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVT 238
           G L  ARL+F+K   +D VS++ +I  Y   G LD+A  L  +M +      P+E  +++
Sbjct: 173 GSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVK--PSEIGMIS 230

Query: 239 VLSACAHMGSLELGNWVCSLIEGHGL--GSNLHVTNALIDMYSKCGDLVKARDLFESIEK 296
           +    A +  L+LG  + + +  +G    S + +  ALIDMY KC +L  AR +F+ + K
Sbjct: 231 ITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSK 290

Query: 297 RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
             +ISW  MI  Y H ++  E + LF +ML   + PN++T LS++  C   GAL+LGK +
Sbjct: 291 ASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLL 350

Query: 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGK 416
           HA+  +N   L+ V L T+ IDMY KCG++++A  VFD    K L  W+AMIS  A +  
Sbjct: 351 HAFTLRNGFTLSLV-LATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNC 409

Query: 417 ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG 476
            D+A  +F  M G G++P++ T V +L  C  AG L++G+ + ++ I    I   +    
Sbjct: 410 IDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGK-WIHSYIDKQGIKGDMILKT 468

Query: 477 CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534
             VD+    G  D A  L      + D ++W +++    +HG    GE+  +   E+E
Sbjct: 469 SFVDMYANCGDIDTAHRLFAEATDR-DISMWNAMISGFAMHGH---GEAALELFEEME 522



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 124/431 (28%), Positives = 211/431 (48%), Gaps = 31/431 (7%)

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
           ++E +Q+H H +K        V  + +  Y+ N  + S                  LIT 
Sbjct: 56  LNETQQLHGHFIKTSSNCSYRVPLAALESYSSNAAIHSF-----------------LITS 98

Query: 206 YASRGYLDDARQLFDEM---PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
           Y       DA +++  M       +NFV     + +VL AC  + S  LG  V   +  +
Sbjct: 99  YIKNNCPADAAKIYAYMRGTDTEVDNFV-----IPSVLKACCLIPSFLLGQEVHGFVVKN 153

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
           G   ++ V NALI MYS+ G L  AR LF+ IE +DV+SW+ MI  Y  +    EAL L 
Sbjct: 154 GFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLL 213

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ-KLNNVSLWTSLIDMYA 381
           R M    ++P+++  +S+    A L  L LGK +HAY+ +N +   + V L T+LIDMY 
Sbjct: 214 RDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYV 273

Query: 382 KCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVG 441
           KC N+  A +VFDG+   ++ SW AMI+        ++ + LF +M+GEG+ P++IT + 
Sbjct: 274 KCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLS 333

Query: 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK 501
           ++  C  AG L++G+   +A       +  L      +D+ G+ G    A ++  + + K
Sbjct: 334 LVKECGTAGALELGK-LLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSK 392

Query: 502 PDAAIWTSLLGACRVHGRLELGESVAKHL--LELEPENPGAYVLLSNMYAGAGRWDDVAT 559
            D  +W++++ +   +  ++    +  H+    + P N    V L  + A AG  +    
Sbjct: 393 -DLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRP-NERTMVSLLMICAKAGSLEMGKW 450

Query: 560 IRTRLNDKGMK 570
           I + ++ +G+K
Sbjct: 451 IHSYIDKQGIK 461


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 297/712 (41%), Positives = 434/712 (60%), Gaps = 35/712 (4%)

Query: 21  SDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDL 80
           S+ P       P ++LL  C  M  I Q+HSQ IKTGL +    L+K+I  C     GD+
Sbjct: 27  SNTPLHSFVKSP-ISLLETCNTMYEINQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDV 85

Query: 81  SYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSC 140
            YA  VF+ I +P+  IWN +I+G+S  +     +  Y  M++    P+ +TFPF+LK  
Sbjct: 86  YYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGF 145

Query: 141 AKISAISEGKQIHAHVLKLG-LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSY 199
            K  A+  GK +  H +  G L+S+ FV    I++++  G +  AR +F+     + V++
Sbjct: 146 TKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTW 205

Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
             +++GY      +++++LF EM  + E   PN  T+V +LSAC+ +  L  G  + +  
Sbjct: 206 NVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKY 265

Query: 260 EGHGLGS-NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN--------------- 303
              G+   NL + NALIDM++ CG++  AR +F+ ++ RDVISW                
Sbjct: 266 IKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLA 325

Query: 304 ----------------VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347
                            MI GY   + +KE L LFR M  SN++P++ T +S+L ACA+L
Sbjct: 326 RKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHL 385

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
           GAL+LG+W   YIDKN  K N+  +  +LIDMY KCGN++ A+++F+ M  K   +W AM
Sbjct: 386 GALELGEWAKTYIDKNKIK-NDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAM 444

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           I GLA +G  ++AL++FS M+   + PD+IT++GV+ AC H GL+  G+ +F+ M   + 
Sbjct: 445 IVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHG 504

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
           I P L HYGCMVDLLGRAG   EA  ++  M +KP++ +W SLLGACRVH  ++L E  A
Sbjct: 505 IKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAA 564

Query: 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF 587
             +LELEPEN   YVLL N+YA   +W ++  +R  + ++G+KK+PGCS +E+  +V+EF
Sbjct: 565 NEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEF 624

Query: 588 LVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAY 647
           + GDK HPQSK IY  L+ +   L  +G+ PDTSEV  D+ EE KE AL  HSEKLAIAY
Sbjct: 625 VAGDKSHPQSKEIYAKLENMKQDLSNAGYSPDTSEVFLDVGEEDKETALYMHSEKLAIAY 684

Query: 648 GLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDG 699
            LIS+  G TIRIVKNLR+C +CH    ++SK++NRE+I RD+ RFHHF+ G
Sbjct: 685 ALISSGKGVTIRIVKNLRMCVDCHHMAMVVSKVYNRELIVRDKTRFHHFRHG 736


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 295/705 (41%), Positives = 432/705 (61%), Gaps = 71/705 (10%)

Query: 6   SSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFAL 65
           ++L   P+   + P  D P            +  C +M+ +KQVH+ ++KTG  +     
Sbjct: 2   NALMFQPNTASYYPRLDVPQ-----------IKACKSMRELKQVHAFLVKTGQTHDNAIA 50

Query: 66  SKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSP-VVAIKFYVRMILS 124
           ++++ + A S F D+ YAL VF+ + E N   WN +IR  + +    + A+  + +M+  
Sbjct: 51  TEILRLSATSDFRDIGYALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSE 110

Query: 125 GFV-PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELES 183
             V PN +TFP +LK+CA ++ ++EGKQ+H  +LK GL  D FV T+L+ MY   G +E 
Sbjct: 111 ATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMED 170

Query: 184 ARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC 243
           A ++F                 Y +   +DD R L  +   RE N V             
Sbjct: 171 ANVLF-----------------YRNVEGVDDVRNLVRDERGREFNVV------------- 200

Query: 244 AHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN 303
                                     + N ++D Y++ G+L  AR+LF+ + +R V+SWN
Sbjct: 201 --------------------------LCNVMVDGYARVGNLKAARELFDRMAQRSVVSWN 234

Query: 304 VMIGGYTHTSDYKEALMLFRQMLQ-SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
           VMI GY     YKEA+ +F +M+Q  ++ PN VT +SVLPA + LG L+LGKW+H Y +K
Sbjct: 235 VMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEK 294

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALS 422
           N  ++++V L ++L+DMYAKCG+I+ A QVF+ +    + +WNA+I GLAMHGKA+   +
Sbjct: 295 NKIRIDDV-LGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFN 353

Query: 423 LFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482
             SRM   G+ P D+T++ +LSAC+HAGL+D GR +FN M+    + PK++HYGCMVDLL
Sbjct: 354 YLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLL 413

Query: 483 GRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV 542
           GRAG  +EAE L+  M MKPD  IW +LLGA ++H  +++G   A+ L+++ P + GAYV
Sbjct: 414 GRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYV 473

Query: 543 LLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYE 602
            LSNMYA +G WD VA +R  + D  ++K PGCS IE+  V+HEFLV D  H ++K I+ 
Sbjct: 474 ALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHS 533

Query: 603 MLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVK 662
           ML+EI   L   G +PDT++VL  MDE+ KE  L +HSEK+A+A+GLIST P T + IVK
Sbjct: 534 MLEEISNKLSLEGHMPDTTQVLLKMDEKHKESVLHYHSEKIAVAFGLISTPPKTPLCIVK 593

Query: 663 NLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           NLR+C +CHS+ KLISK++ R+I+ RDR RFHHF+ G+CSC DYW
Sbjct: 594 NLRICEDCHSSMKLISKMYERKIVIRDRKRFHHFEHGSCSCMDYW 638


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 290/673 (43%), Positives = 432/673 (64%), Gaps = 6/673 (0%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           +LL    + +++ Q+H+Q++ +GL  + F ++K +   A    G++ YA  VF+   EP+
Sbjct: 76  SLLDHSVHKRHLNQIHAQLVVSGLVESGFLVTKFVN--ASWNIGEIGYARKVFDEFPEPS 133

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
             +WN IIRG+S  +    AI+ Y RM  SG  P+ +T P +LK+C+ +  +  GK++H 
Sbjct: 134 VFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHG 193

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
            + +LG ESD FV   L+ +YA+ G +E AR+VF     R+ VS+T++I+GY   G   +
Sbjct: 194 QIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPME 253

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274
           A ++F +M  R+ N  P+   +V+VL A   +  LE G  +   +   GL     +  +L
Sbjct: 254 ALRIFGQM--RQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISL 311

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
             MY+KCG ++ AR  F+ +E  +V+ WN MI GY       EA+ LF++M+  NI  + 
Sbjct: 312 TAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDS 371

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           +T  S + ACA +G+LDL KW+  YI+K   + N+V + T+LIDM+AKCG++  A +VFD
Sbjct: 372 ITVRSAILACAQVGSLDLAKWMGDYINKTEYR-NDVFVNTALIDMFAKCGSVDLAREVFD 430

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
               K +  W+AMI G  +HG+   A+ LF  M   G+ P+D+TFVG+L+ACNH+GL++ 
Sbjct: 431 RTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEE 490

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
           G + F++M + Y I  + QHY C+VDLLGR+G  +EA   + TM ++P  ++W +LLGAC
Sbjct: 491 GWELFHSM-KYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGAC 549

Query: 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPG 574
           +++  + LGE  A+ L  L+P N G YV LSN+YA +  WD VA +R  + +KG+ K  G
Sbjct: 550 KIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLG 609

Query: 575 CSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEG 634
            S IE+   +  F VGDK HP+ K I+E L+ ++  L+++GF+P    VL+D+++E KE 
Sbjct: 610 YSLIEINGKLQAFRVGDKSHPRFKEIFEELESLERRLKEAGFIPHIESVLHDLNQEEKEE 669

Query: 635 ALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFH 694
            L +HSE+LAIAYGLIST PGTT+RI KNLR C NCHSATKLISK+ NREI+ RD NRFH
Sbjct: 670 TLCNHSERLAIAYGLISTAPGTTLRITKNLRACINCHSATKLISKLVNREIVVRDANRFH 729

Query: 695 HFKDGNCSCNDYW 707
           HFK+G CSC DYW
Sbjct: 730 HFKNGVCSCRDYW 742


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  579 bits (1493), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 300/677 (44%), Positives = 427/677 (63%), Gaps = 9/677 (1%)

Query: 34  LALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           ++LL  C +   ++  K+VH+++ + GL    +  + L+ +   +  G +  AL VF  +
Sbjct: 310 VSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSM--YTKCGSMEDALEVFNLV 367

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
           +  N V W  +I G +       A  F+ +MI SG  PN  TF  IL +C++ SA+ +G+
Sbjct: 368 KGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGR 427

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           QIH  ++K G  +D  V T+L++MYA+ G L  AR VF + S ++ V++ A+IT Y    
Sbjct: 428 QIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHE 487

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
             D+A   F    + +E   P+ ST  ++L+ C    +LELG WV SLI   G  S+LH+
Sbjct: 488 KYDNAVATFQ--ALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHI 545

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            NAL+ M+  CGDL+ A +LF  + +RD++SWN +I G+    + + A   F+ M +S +
Sbjct: 546 RNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGV 605

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           +P+ +TF  +L ACA   AL  G+ +HA I +     + V + T LI MY KCG+I  A 
Sbjct: 606 KPDQITFTGLLNACASPEALTEGRRLHALITEAALDCD-VVVGTGLISMYTKCGSIDDAH 664

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
            VF  +  K + SW +MI+G A HG+  +AL LF +M  EG++PD ITFVG LSAC HAG
Sbjct: 665 LVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAG 724

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L+  G  +F +M +D+ I P+++HYGCMVDL GRAGL  EA   +  M++KPD+ +W +L
Sbjct: 725 LIKEGLHHFESM-KDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGAL 783

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           LGAC+VH  +EL E VA+  LEL+P + G YV+LSN+YA AG W +V  +R  + D+G+ 
Sbjct: 784 LGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVV 843

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           K PG S IEV   VH F   DK HPQ + I+  L  +   ++K G+VPDT  VL+D+++ 
Sbjct: 844 KKPGQSWIEVDGRVHIFCSDDKTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVEDS 903

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KE AL HHSE+LAIAYGL+ T P T I I KNLRVCG+CH+ATKLISKI  R+IIARD 
Sbjct: 904 EKEHALCHHSERLAIAYGLLKTPPLTPIVISKNLRVCGDCHTATKLISKITKRQIIARDS 963

Query: 691 NRFHHFKDGNCSCNDYW 707
           NRFHHFKDG CSC D+W
Sbjct: 964 NRFHHFKDGVCSCGDFW 980



 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 155/516 (30%), Positives = 269/516 (52%), Gaps = 10/516 (1%)

Query: 20  SSDPPYKLLQNQPSLALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSP 76
           S D P+  +  Q   +LL  C   +N+   +++H+ I  + +    F  + LI + A   
Sbjct: 94  SVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYA--K 151

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
            G+ + A  +F+ + + +   WN ++ G+        A + + +M+  G  P+ YTF ++
Sbjct: 152 CGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYM 211

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L +CA    + +G ++ + +L  G ++D FV T+LINM+ + G ++ A  VFN    RD 
Sbjct: 212 LNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDL 271

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           +++T++ITG A       A  LF  M   EE   P++   V++L AC H  +LE G  V 
Sbjct: 272 ITWTSMITGLARHRQFKQACNLFQVM--EEEGVQPDKVAFVSLLKACNHPEALEQGKRVH 329

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
           + ++  GL + ++V  AL+ MY+KCG +  A ++F  ++ R+V+SW  MI G+      +
Sbjct: 330 ARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRME 389

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           EA + F +M++S IEPN VTF+S+L AC+   AL  G+ IH  I K    + +  + T+L
Sbjct: 390 EAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKA-GYITDDRVRTAL 448

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           + MYAKCG++  A  VF+ +  + + +WNAMI+    H K D A++ F  ++ EG++PD 
Sbjct: 449 LSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDS 508

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
            TF  +L+ C     L++G+ +  ++I        L     +V +    G    A  L  
Sbjct: 509 STFTSILNVCKSPDALELGK-WVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFN 567

Query: 497 TMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
            M  + D   W +++     HG  +      K + E
Sbjct: 568 DMPER-DLVSWNTIIAGFVQHGENQFAFDYFKMMQE 602



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 139/304 (45%), Gaps = 37/304 (12%)

Query: 292 ESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALD 351
           E ++ ++    N  +   +      EA+++   +   +I+ +  T+ S+L  C     L 
Sbjct: 62  EFVDIKNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLG 121

Query: 352 LGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGL 411
            G+ IH +I K  +   ++ +W  LI MYAKCGN  +A+Q+FD M  K + SWN ++ G 
Sbjct: 122 DGERIHNHI-KFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGY 180

Query: 412 AMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ-----DY 466
             H + ++A  L  +M+ +G++PD  TFV +L+AC  A  +D G + F+ ++      D 
Sbjct: 181 VQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDL 240

Query: 467 KISPKL--QHYGC-----------------------MVDLLGRAGLFDEAEALLKTME-- 499
            +   L   H  C                       M+  L R   F +A  L + ME  
Sbjct: 241 FVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEE 300

Query: 500 -MKPDAAIWTSLLGACRVHGRLELGESVAKHLLE--LEPENPGAYVLLSNMYAGAGRWDD 556
            ++PD   + SLL AC     LE G+ V   + E  L+ E      LLS MY   G  +D
Sbjct: 301 GVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLS-MYTKCGSMED 359

Query: 557 VATI 560
              +
Sbjct: 360 ALEV 363


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  579 bits (1492), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 306/704 (43%), Positives = 441/704 (62%), Gaps = 24/704 (3%)

Query: 6   SSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFAL 65
           SS++ +P+ L  PPS         N   L+L + C  ++++KQVH+QII    HN+ F L
Sbjct: 81  SSMSRTPNPLTNPPS---------NPQILSLFNPCKTLRHLKQVHAQIITH--HNSPFQL 129

Query: 66  SKLIEICAVSPFGD-LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILS 124
           S L  + A+SPF   L+YA  +F  ++ P   ++N++IR  S S +P+ A+  Y  M+ S
Sbjct: 130 SALASLSALSPFPTFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQS 189

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
           G  P+  T+PF++K+C + S    G  +H HV+K G E D ++ +SLI++YA   +L +A
Sbjct: 190 GLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAA 249

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
           + +FN  S RD VS+ A+I GY     +  AR +FD M  R+        +  T+++  A
Sbjct: 250 KQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDV------ISWNTMINGYA 303

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
            +G ++    +   +       NL   N+++  + KCG++  A  LF  +  RDV+SWN 
Sbjct: 304 IVGKIDEAKRLFDEMPER----NLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNS 359

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           M+  Y       EAL LF QM    ++P + T +S+L ACA+LGALD G  +H YI+ N 
Sbjct: 360 MLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNR 419

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF 424
            ++N++ + T+L+DMYAKCG I  A QVF+ M  K + +WN +I+G+A+HG   +A  LF
Sbjct: 420 IEVNSI-VGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLF 478

Query: 425 SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484
             M   G++P+DITFV +LSAC+HAG++D G++  + M   Y I PK++HYGC++DLL R
Sbjct: 479 KEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLAR 538

Query: 485 AGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL 544
           AG  +EA  L+ TM M+P+ +   +LLG CR+HG  ELGE V K L+ L+P + G Y+LL
Sbjct: 539 AGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILL 598

Query: 545 SNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEML 604
           SN+YA A +WDD   +R  +   G+ KVPG S IE+  +VH F+ GD  HP+S  IYE L
Sbjct: 599 SNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKL 658

Query: 605 DEIDALLEKS-GFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKN 663
           +EI   L+ + G+  DT  VL DM+EE KE AL+ HSEKLAIAYGL+       IRIVKN
Sbjct: 659 NEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKN 718

Query: 664 LRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           LRVC +CH   KLISK++ REII RDRNRFHHF+DG CSC D+W
Sbjct: 719 LRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 762


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 297/677 (43%), Positives = 429/677 (63%), Gaps = 9/677 (1%)

Query: 34  LALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           ++LL  C +   ++  K+VH+++ + G     +  + ++ +   +  G +  AL VF+ +
Sbjct: 316 VSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSM--YTKCGSMEDALEVFDLV 373

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
           +  N V W  +I G +       A  F+ +MI SG  PN  TF  IL +C+  SA+  G+
Sbjct: 374 KGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQ 433

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           QI  H+++ G  SD  V T+L++MYA+ G L+ A  VF K S ++ V++ A+IT Y    
Sbjct: 434 QIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHE 493

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
             D+A   F    + +E   PN ST  ++L+ C    SLELG WV  LI   GL S+LHV
Sbjct: 494 QYDNALATFQ--ALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHV 551

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
           +NAL+ M+  CGDL+ A++LF  + KRD++SWN +I G+      + A   F+ M +S I
Sbjct: 552 SNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGI 611

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           +P+ +TF  +L ACA   AL  G+ +HA I +     + V + T LI MY KCG+I+ A 
Sbjct: 612 KPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCD-VLVGTGLISMYTKCGSIEDAH 670

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           QVF  +  K + SW +MI+G A HG+  +AL LF +M  EG++PD ITFVG LSAC HAG
Sbjct: 671 QVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAG 730

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L++ G  +F +M +++ I P+++HYGCMVDL GRAGL +EA   +  M+++PD+ +W +L
Sbjct: 731 LIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGAL 789

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           LGAC+VH  +EL E  A+  LEL+P + G +V+LSN+YA AG W +VA +R  + D+G+ 
Sbjct: 790 LGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVV 849

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           K PG S IEV   VH F   DK HPQ++ I+  L+ +   + + G+VPDT  VL+D+++ 
Sbjct: 850 KKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDN 909

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KE AL +HSE+LAI YGL+ T P T I I KNLRVCG+CH+ATK ISKI  R+IIARD 
Sbjct: 910 EKEQALFYHSERLAITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDS 969

Query: 691 NRFHHFKDGNCSCNDYW 707
           NRFHHFKDG CSC D+W
Sbjct: 970 NRFHHFKDGVCSCGDFW 986



 Score =  265 bits (678), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 155/514 (30%), Positives = 275/514 (53%), Gaps = 10/514 (1%)

Query: 22  DPPYKLLQNQPSLALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFG 78
           D  +  +  Q   ALL  C   +N+   +++++ I K+G+    F  + LI + A    G
Sbjct: 102 DSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYA--KCG 159

Query: 79  DLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILK 138
           +   A  +F+ +RE +   WN ++ G+        A K + +M+     P+  TF  +L 
Sbjct: 160 NTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLN 219

Query: 139 SCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVS 198
           +CA    + +G++++  +LK G ++D FV T+LINM+ + G++  A  VF+    RD V+
Sbjct: 220 ACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVT 279

Query: 199 YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           +T++ITG A  G    A  LF  M   EE   P++   V++L AC H  +LE G  V + 
Sbjct: 280 WTSMITGLARHGRFKQACNLFQRM--EEEGVQPDKVAFVSLLRACNHPEALEQGKKVHAR 337

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
           ++  G  + ++V  A++ MY+KCG +  A ++F+ ++ R+V+SW  MI G+       EA
Sbjct: 338 MKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEA 397

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
            + F +M++S IEPN VTF+S+L AC+   AL  G+ I  +I +     ++  + T+L+ 
Sbjct: 398 FLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDD-RVRTALLS 456

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
           MYAKCG++K A +VF+ +  + + +WNAMI+    H + D AL+ F  ++ EG++P+  T
Sbjct: 457 MYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSST 516

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
           F  +L+ C  +  L++G+ + + +I    +   L     +V +    G    A+ L   M
Sbjct: 517 FTSILNVCKSSDSLELGK-WVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDM 575

Query: 499 EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
             K D   W +++     HG+ ++     K + E
Sbjct: 576 P-KRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQE 608



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 143/299 (47%), Gaps = 37/299 (12%)

Query: 297 RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
           +D    N ++   +    + EA+ +  ++  S+I+    T+ ++L  C     L  G+ I
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGK 416
           + +I K+  +  ++ +W +LI+MYAKCGN  +A+Q+FD M  K + SWN ++ G   HG 
Sbjct: 133 YNHIKKSGVQ-PDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGL 191

Query: 417 ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ-----DYKISPK 471
            ++A  L  +M+ + ++PD  TFV +L+AC  A  +D GR+ +N +++     D  +   
Sbjct: 192 YEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTA 251

Query: 472 L--QHYGC-----------------------MVDLLGRAGLFDEAEALLKTME---MKPD 503
           L   H  C                       M+  L R G F +A  L + ME   ++PD
Sbjct: 252 LINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPD 311

Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLEL--EPENPGAYVLLSNMYAGAGRWDDVATI 560
              + SLL AC     LE G+ V   + E+  + E      +LS MY   G  +D   +
Sbjct: 312 KVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILS-MYTKCGSMEDALEV 369


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 297/677 (43%), Positives = 429/677 (63%), Gaps = 9/677 (1%)

Query: 34  LALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           ++LL  C +   ++  K+VH+++ + G     +  + ++ +   +  G +  AL VF+ +
Sbjct: 316 VSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSM--YTKCGSMEDALEVFDLV 373

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
           +  N V W  +I G +       A  F+ +MI SG  PN  TF  IL +C+  SA+  G+
Sbjct: 374 KGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQ 433

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           QI  H+++ G  SD  V T+L++MYA+ G L+ A  VF K S ++ V++ A+IT Y    
Sbjct: 434 QIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHE 493

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
             D+A   F    + +E   PN ST  ++L+ C    SLELG WV  LI   GL S+LHV
Sbjct: 494 QYDNALATFQ--ALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHV 551

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
           +NAL+ M+  CGDL+ A++LF  + KRD++SWN +I G+      + A   F+ M +S I
Sbjct: 552 SNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGI 611

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           +P+ +TF  +L ACA   AL  G+ +HA I +     + V + T LI MY KCG+I+ A 
Sbjct: 612 KPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCD-VLVGTGLISMYTKCGSIEDAH 670

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           QVF  +  K + SW +MI+G A HG+  +AL LF +M  EG++PD ITFVG LSAC HAG
Sbjct: 671 QVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAG 730

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L++ G  +F +M +++ I P+++HYGCMVDL GRAGL +EA   +  M+++PD+ +W +L
Sbjct: 731 LIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGAL 789

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           LGAC+VH  +EL E  A+  LEL+P + G +V+LSN+YA AG W +VA +R  + D+G+ 
Sbjct: 790 LGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVV 849

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           K PG S IEV   VH F   DK HPQ++ I+  L+ +   + + G+VPDT  VL+D+++ 
Sbjct: 850 KKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDN 909

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KE AL +HSE+LAI YGL+ T P T I I KNLRVCG+CH+ATK ISKI  R+IIARD 
Sbjct: 910 EKEQALFYHSERLAITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDS 969

Query: 691 NRFHHFKDGNCSCNDYW 707
           NRFHHFKDG CSC D+W
Sbjct: 970 NRFHHFKDGVCSCGDFW 986



 Score =  265 bits (678), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 155/514 (30%), Positives = 275/514 (53%), Gaps = 10/514 (1%)

Query: 22  DPPYKLLQNQPSLALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFG 78
           D  +  +  Q   ALL  C   +N+   +++++ I K+G+    F  + LI + A    G
Sbjct: 102 DSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYA--KCG 159

Query: 79  DLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILK 138
           +   A  +F+ +RE +   WN ++ G+        A K + +M+     P+  TF  +L 
Sbjct: 160 NTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLN 219

Query: 139 SCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVS 198
           +CA    + +G++++  +LK G ++D FV T+LINM+ + G++  A  VF+    RD V+
Sbjct: 220 ACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVT 279

Query: 199 YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           +T++ITG A  G    A  LF  M   EE   P++   V++L AC H  +LE G  V + 
Sbjct: 280 WTSMITGLARHGRFKQACNLFQRM--EEEGVQPDKVAFVSLLRACNHPEALEQGKKVHAR 337

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
           ++  G  + ++V  A++ MY+KCG +  A ++F+ ++ R+V+SW  MI G+       EA
Sbjct: 338 MKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEA 397

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
            + F +M++S IEPN VTF+S+L AC+   AL  G+ I  +I +     ++  + T+L+ 
Sbjct: 398 FLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDD-RVRTALLS 456

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
           MYAKCG++K A +VF+ +  + + +WNAMI+    H + D AL+ F  ++ EG++P+  T
Sbjct: 457 MYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSST 516

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
           F  +L+ C  +  L++G+ + + +I    +   L     +V +    G    A+ L   M
Sbjct: 517 FTSILNVCKSSDSLELGK-WVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDM 575

Query: 499 EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
             K D   W +++     HG+ ++     K + E
Sbjct: 576 P-KRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQE 608



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 142/299 (47%), Gaps = 37/299 (12%)

Query: 297 RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
           +D    N ++   +    + EA+ +  ++  S+I+    T+ ++L  C     L  G+ I
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGK 416
           + +I K+  +  ++ +  +LI+MYAKCGN  +A+Q+FD M  K + SWN ++ G   HG 
Sbjct: 133 YNHIKKSGVQ-PDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGL 191

Query: 417 ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ-----DYKISPK 471
            ++A  L  +M+ + ++PD  TFV +L+AC  A  +D GR+ +N +++     D  +   
Sbjct: 192 YEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTA 251

Query: 472 L--QHYGC-----------------------MVDLLGRAGLFDEAEALLKTME---MKPD 503
           L   H  C                       M+  L R G F +A  L + ME   ++PD
Sbjct: 252 LINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPD 311

Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLEL--EPENPGAYVLLSNMYAGAGRWDDVATI 560
              + SLL AC     LE G+ V   + E+  + E      +LS MY   G  +D   +
Sbjct: 312 KVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILS-MYTKCGSMEDALEV 369


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 293/667 (43%), Positives = 428/667 (64%), Gaps = 17/667 (2%)

Query: 44  QNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIR 103
           Q ++Q+H+  +KT + N  F  S+L+ + +     DL YA  +F+ I+  + + WN II+
Sbjct: 27  QEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIK 86

Query: 104 GHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLES 163
            +  +      I  +  ++   ++P+ +T P ++K CA++  + EGKQIH   LK+G  S
Sbjct: 87  CYVENQFSHDGIVLFHELVHE-YLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGS 145

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
           D FV  SL+NMY++ GE++ AR VF+    +D V + +LI GYA  G +D A QLF+EMP
Sbjct: 146 DVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMP 205

Query: 224 IREENFVPNESTVVTVLSACAHMGSLE--LGNWVCSLIEGHGLGSNLHVTNALIDMYSKC 281
            R+     + + +V  LS C  + S         C          NL   NA+I+ Y K 
Sbjct: 206 ERD---AFSWTVLVDGLSKCGKVESARKLFDQMPCR---------NLVSWNAMINGYMKS 253

Query: 282 GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
           GD   A +LF  +   D+++WN+MI GY     + +A+ +F  ML+    P+  T +SVL
Sbjct: 254 GDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVL 313

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
            A + L  L  G+WIH+Y++KN  +L+ + L TSLI+MYAKCG I++A  VF  +  K +
Sbjct: 314 SAVSGLAVLGKGRWIHSYMEKNGFELDGI-LGTSLIEMYAKCGCIESALTVFRAIQKKKV 372

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
             W A+I GL +HG A+ AL+LF  M   GL+P+ I F+GVL+ACNHAGL+D GRQYF+ 
Sbjct: 373 GHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDM 432

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
           M+ +YKI P L+HYGC+VD+L RAG  +EA+  ++ M + P+  IW SLLG  R HG+++
Sbjct: 433 MMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKID 492

Query: 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
           +GE  A+ ++E+ PE  G Y+LLSNMYA +G W+ V+ +R  +  +G +K PGCSS+E  
Sbjct: 493 IGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHK 552

Query: 582 SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD-EEWKEGALSHHS 640
             +HEF+VGD  HPQ+K IY  + E+   L+  G VPDT++VL  ++ E+ KE  L +HS
Sbjct: 553 GTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHS 612

Query: 641 EKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGN 700
           E+LAIA+GLI+ KPG  IRI+KNLRVC +CHS TKL+SKI++REII RD  RFHHFK+G+
Sbjct: 613 ERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGS 672

Query: 701 CSCNDYW 707
           CSC DYW
Sbjct: 673 CSCMDYW 679



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 191/379 (50%), Gaps = 18/379 (4%)

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYA--QNGELESARLVFNKSSLRDAVSYT 200
           + A  E +Q+HA  LK  + + PFV + L+ +Y+  +  +L  AR +F++   R  + + 
Sbjct: 23  LCAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWN 82

Query: 201 ALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE 260
            +I  Y    +  D   LF E+      ++P+  T+  V+  CA +G ++ G  +  L  
Sbjct: 83  TIIKCYVENQFSHDGIVLFHELV---HEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLAL 139

Query: 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALM 320
             G GS++ V  +L++MYSKCG++  AR +F+ +  +DV+ WN +I GY    +   AL 
Sbjct: 140 KIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQ 199

Query: 321 LFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMY 380
           LF +M     E +  ++  ++   +  G ++  + +      +     N+  W ++I+ Y
Sbjct: 200 LFEEM----PERDAFSWTVLVDGLSKCGKVESARKLF-----DQMPCRNLVSWNAMINGY 250

Query: 381 AKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFV 440
            K G+  +A ++F  M    L +WN MI+G  ++G+   A+ +F  M+  G +P   T V
Sbjct: 251 MKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLV 310

Query: 441 GVLSACNHAGLLDIGRQYFNAMIQD-YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME 499
            VLSA +   +L  GR   + M ++ +++   L     ++++  + G  + A  + + ++
Sbjct: 311 SVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILG--TSLIEMYAKCGCIESALTVFRAIQ 368

Query: 500 MKPDAAIWTSLLGACRVHG 518
            K     WT+++    +HG
Sbjct: 369 -KKKVGHWTAIIVGLGIHG 386


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 291/713 (40%), Positives = 424/713 (59%), Gaps = 44/713 (6%)

Query: 34  LALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           L++L  C N   ++  +++H+ +  +G+       + LI +   S  G++S A  +F+ +
Sbjct: 183 LSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITM--YSKCGEISLACEIFQKM 240

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
           +E N V W  II+ ++       A + Y +M+ +G  PN  TF  +L SC    A++ G+
Sbjct: 241 KERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGR 300

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           +IH+H+ + GLE+D  V  +LI MY +   ++ AR  F++ S RD +S++A+I GYA  G
Sbjct: 301 RIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSG 360

Query: 211 Y-----LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           Y     LD+  QL + M  R E   PN+ T +++L AC+  G+LE G  + + I   G  
Sbjct: 361 YQDKESLDEVFQLLERM--RREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFE 418

Query: 266 SNLHVTNALIDMYSKCG-------------------------------DLVKARDLFESI 294
           S+  +  A+ +MY+KCG                               DL  A  +F  +
Sbjct: 419 SDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEM 478

Query: 295 EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGK 354
             R+V+SWN+MI GY  + D  +   L   M     +P+ VT +S+L AC  L AL+ GK
Sbjct: 479 STRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGK 538

Query: 355 WIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMH 414
            +HA   K   + + V + TSLI MY+KCG +  A  VFD +  +   +WNAM++G   H
Sbjct: 539 LVHAEAVKLGLESDTV-VATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQH 597

Query: 415 GKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQH 474
           G   +A+ LF RM+ E + P++ITF  V+SAC  AGL+  GR+ F  M +D+++ P  QH
Sbjct: 598 GIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQH 657

Query: 475 YGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534
           YGCMVDLLGRAG   EAE  ++ M  +PD ++W +LLGAC+ H  ++L E  A H+L LE
Sbjct: 658 YGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLE 717

Query: 535 PENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVH 594
           P N   YV LSN+YA AGRWDD   +R  ++DKG+KK  G SSIE+   +H F+  D  H
Sbjct: 718 PSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAEDCAH 777

Query: 595 PQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKP 654
           P+   I+  L+ +   ++++G+ PD   VL+D+DE  KE AL HHSEKLAIAYGL+ T P
Sbjct: 778 PEIDSIHAELEMLTKEMKEAGYTPDMRFVLHDVDEVQKERALCHHSEKLAIAYGLLKTPP 837

Query: 655 GTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           GT IRI+KNLRVCG+CH+ATK ISKI  REI+ARD NRFH+FK+G CSC D+W
Sbjct: 838 GTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFKNGTCSCGDFW 890



 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 181/597 (30%), Positives = 285/597 (47%), Gaps = 74/597 (12%)

Query: 38  SKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVI 97
           +K    ++ K VH Q+ + GL    +  + LI     S FGD++    VF  +   + V 
Sbjct: 89  AKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINF--YSKFGDVASVEQVFRRMTLRDVVT 146

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
           W+++I  ++ ++ P  A   + RM  +   PN  TF  ILK+C   S + + ++IH  V 
Sbjct: 147 WSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVK 206

Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ 217
             G+E+D  V T+LI MY++ GE+  A  +F K   R+ VS+TA+I   A    L++A +
Sbjct: 207 ASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFE 266

Query: 218 LFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDM 277
           L+++M   +    PN  T V++L++C    +L  G  + S I   GL +++ V NALI M
Sbjct: 267 LYEKML--QAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITM 324

Query: 278 YSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT-----SDYKEALMLFRQMLQSNIEP 332
           Y KC  +  AR+ F+ + KRDVISW+ MI GY  +         E   L  +M +  + P
Sbjct: 325 YCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFP 384

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDK------------------------------ 362
           N VTF+S+L AC+  GAL+ G+ IHA I K                              
Sbjct: 385 NKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVF 444

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALS 422
           +  +  NV  W SL+ MY KCG++ +AE+VF  M  + + SWN MI+G A  G   K   
Sbjct: 445 SKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFE 504

Query: 423 LFSRMIGEGLQPDDITFVGVLSACN-----------HAGLLDIGRQ----YFNAMIQDY- 466
           L S M  EG QPD +T + +L AC            HA  + +G +       ++I  Y 
Sbjct: 505 LLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYS 564

Query: 467 -------------KISPK-LQHYGCMVDLLGRAGLFDEAEALLKTM---EMKPDAAIWTS 509
                        KIS +    +  M+   G+ G+  EA  L K M    + P+   +T+
Sbjct: 565 KCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTA 624

Query: 510 LLGACRVHGRLELGESVAKHLLELEPENPGA--YVLLSNMYAGAGRWDDVATIRTRL 564
           ++ AC   G ++ G  + + + E     PG   Y  + ++   AGR  +      R+
Sbjct: 625 VISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRM 681



 Score =  242 bits (618), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 150/480 (31%), Positives = 251/480 (52%), Gaps = 15/480 (3%)

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
           G + N+ T+  I++ CAK+    +GK +H  + +LGL  D ++  SLIN Y++ G++ S 
Sbjct: 73  GLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASV 132

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
             VF + +LRD V+++++I  YA   +   A   F+ M  ++ N  PN  T +++L AC 
Sbjct: 133 EQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERM--KDANIEPNRITFLSILKACN 190

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
           +   LE    + ++++  G+ +++ V  ALI MYSKCG++  A ++F+ +++R+V+SW  
Sbjct: 191 NYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTA 250

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           +I          EA  L+ +MLQ+ I PN VTF+S+L +C    AL+ G+ IH++I +  
Sbjct: 251 IIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERG 310

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADK----- 419
            +  +V +  +LI MY KC  I+ A + FD M  + + SW+AMI+G A  G  DK     
Sbjct: 311 LE-TDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDE 369

Query: 420 ALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479
              L  RM  EG+ P+ +TF+ +L AC+  G L+ GRQ  +A I              + 
Sbjct: 370 VFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQ-IHAEISKVGFESDRSLQTAIF 428

Query: 480 DLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG 539
           ++  + G   EAE +   ME K +   W SLL      G L   E V     E+   N  
Sbjct: 429 NMYAKCGSIYEAEQVFSKMENK-NVVAWASLLTMYIKCGDLTSAEKV---FSEMSTRNVV 484

Query: 540 AYVLLSNMYAGAGRWDDVATIRTRLNDKGMK--KVPGCSSIEVGSVVHEFLVGDKVHPQS 597
           ++ L+   YA +G    V  + + +  +G +  +V   S +E    +     G  VH ++
Sbjct: 485 SWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEA 544



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 141/537 (26%), Positives = 245/537 (45%), Gaps = 66/537 (12%)

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
           G L +A QL     I++   + N +T   ++  CA +   E G  V   ++  GL  +++
Sbjct: 57  GRLKEAIQLLG--IIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIY 114

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           + N+LI+ YSK GD+     +F  +  RDV++W+ MI  Y   +   +A   F +M  +N
Sbjct: 115 LGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDAN 174

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           IEPN +TFLS+L AC     L+  + IH  +  +  +  +V++ T+LI MY+KCG I  A
Sbjct: 175 IEPNRITFLSILKACNNYSMLEKAREIHTVVKASGME-TDVAVATALITMYSKCGEISLA 233

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
            ++F  M  + + SW A+I   A H K ++A  L+ +M+  G+ P+ +TFV +L++CN  
Sbjct: 234 CEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTP 293

Query: 450 GLLDIGRQYF---------------NAMIQDY--------------KISPK-LQHYGCMV 479
             L+ GR+                 NA+I  Y              ++S + +  +  M+
Sbjct: 294 EALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMI 353

Query: 480 DLLGRAGL-----FDEAEALLKTMEMK---PDAAIWTSLLGACRVHGRLELGESVAKHLL 531
               ++G       DE   LL+ M  +   P+   + S+L AC VHG LE G  +   + 
Sbjct: 354 AGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEIS 413

Query: 532 ELEPENPGA-YVLLSNMYAGAGRWDDVATIRTRLNDKG-------MKKVPGCSSIEVGSV 583
           ++  E+  +    + NMYA  G   +   + +++ +K        +     C  +     
Sbjct: 414 KVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEK 473

Query: 584 VHEFLVGDKV---------HPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEG 634
           V   +    V         + QS  I ++  E+ + ++  GF PD   ++  ++      
Sbjct: 474 VFSEMSTRNVVSWNLMIAGYAQSGDIAKVF-ELLSSMKVEGFQPDRVTIISILEACGALS 532

Query: 635 ALSH----HSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIA 687
           AL      H+E  A+  GL S     T  ++     CG    A  +  KI NR+ +A
Sbjct: 533 ALERGKLVHAE--AVKLGLESDTVVAT-SLIGMYSKCGEVTEARTVFDKISNRDTVA 586


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  577 bits (1486), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 293/677 (43%), Positives = 420/677 (62%), Gaps = 8/677 (1%)

Query: 34   LALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
            L LLS CTN     + K +H  I+++G+ +     + L+ +      G +  A  VFE  
Sbjct: 490  LHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNM--YRRCGSIMEAQNVFEGT 547

Query: 91   REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            R  + + WN++I GH+   S   A K ++ M   G  P+  TF  +L  C    A+  G+
Sbjct: 548  RARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGR 607

Query: 151  QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            QIH  +++ GL+ D  +  +LINMY + G L+ A  VF+    R+ +S+TA+I G+A +G
Sbjct: 608  QIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQG 667

Query: 211  YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
                A +LF +M  + + F P +ST  ++L AC     L+ G  V + I   G   +  V
Sbjct: 668  EDRKAFELFWQM--QNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGV 725

Query: 271  TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
             NALI  YSK G +  AR +F+ +  RD++SWN MI GY        AL    QM +  +
Sbjct: 726  GNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGV 785

Query: 331  EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
              N  +F+S+L AC+   AL+ GK +HA I K   +  +V +  +LI MYAKCG+++ A+
Sbjct: 786  VLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQ-GDVRVGAALISMYAKCGSLEEAQ 844

Query: 391  QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
            +VFD    K + +WNAMI+  A HG A KAL  F+ M  EG++PD  TF  +LSACNH+G
Sbjct: 845  EVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSG 904

Query: 451  LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
            L+  G + F+++   + +SP ++HYGC+V LLGRAG F EAE L+  M   PDAA+W +L
Sbjct: 905  LVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETL 964

Query: 511  LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
            LGACR+HG + L E  A + L+L   NP  YVLLSN+YA AGRWDDVA IR  +  +G++
Sbjct: 965  LGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIR 1024

Query: 571  KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
            K PG S IEV +++HEF+  D+ HP++  IYE L  +   +E++G+ PDT  VL+++D+E
Sbjct: 1025 KEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRLSLEMERAGYSPDTQYVLHNLDKE 1084

Query: 631  WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
             +E +L  HSE+LAIAYGL+ T PGT IRI KNLR+CG+CH+A+K ISK+  REIIARD 
Sbjct: 1085 HQETSLCTHSERLAIAYGLLKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDS 1144

Query: 691  NRFHHFKDGNCSCNDYW 707
            NRFH FK+G CSC D+W
Sbjct: 1145 NRFHTFKNGKCSCEDFW 1161



 Score =  263 bits (671), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 183/595 (30%), Positives = 297/595 (49%), Gaps = 46/595 (7%)

Query: 34  LALLSKC---TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           +++L+ C     ++  K++HS+II+ G        + L+ +       DL  A  VF  I
Sbjct: 187 ISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCE--DLPSARQVFSGI 244

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
              + V +N ++  ++  +     I  + +M   G  P+  T+  +L +    S + EGK
Sbjct: 245 YRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGK 304

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           +IH   +  GL SD  V T+L  M+ + G++  A+      + RD V Y ALI   A  G
Sbjct: 305 RIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHG 364

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
           + ++A + + +M  R +  V N +T ++VL+AC+   +L  G  + S I   G  S++ +
Sbjct: 365 HYEEAFEQYYQM--RSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQI 422

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            N+LI MY++CGDL +AR+LF ++ KRD+ISWN +I GY    D  EA+ L++QM    +
Sbjct: 423 GNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGV 482

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           +P  VTFL +L AC    A   GK IH  I ++  K +N  L  +L++MY +CG+I  A+
Sbjct: 483 KPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIK-SNGHLANALMNMYRRCGSIMEAQ 541

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
            VF+G   + + SWN+MI+G A HG  + A  LF  M  EGL+PD ITF  VL  C +  
Sbjct: 542 NVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPE 601

Query: 451 LLDIGRQYF---------------NAMI---------QD-YKISPKLQHYGCMVDLLGRA 485
            L++GRQ                 NA+I         QD Y++   L+H   M       
Sbjct: 602 ALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIG 661

Query: 486 GLFDEAE-----ALLKTME---MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE- 536
           G  D+ E      L   M+    KP  + ++S+L AC     L+ G+ V  H+L    E 
Sbjct: 662 GFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYEL 721

Query: 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM----KKVPGCSSIEVGSVVHEF 587
           + G    L + Y+ +G   D   +  ++ ++ +    K + G +   +G    +F
Sbjct: 722 DTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQF 776



 Score =  242 bits (617), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 150/508 (29%), Positives = 263/508 (51%), Gaps = 21/508 (4%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           L+  CT  +++   K++H+Q+++ G+    F  + LI +        +S A  VF  +  
Sbjct: 88  LVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCR--SVSDAHQVFLKMPR 145

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + + WN++I  ++       A + +  M  +GF+P+  T+  IL +C   + +  GK+I
Sbjct: 146 RDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKI 205

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H+ +++ G + DP V  SL+NMY +  +L SAR VF+    RD VSY  ++  YA + Y+
Sbjct: 206 HSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYV 265

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           ++   LF +M    E   P++ T + +L A      L+ G  +  L    GL S++ V  
Sbjct: 266 EECIGLFGQMS--SEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGT 323

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           AL  M+ +CGD+  A+   E+   RDV+ +N +I        Y+EA   + QM    +  
Sbjct: 324 ALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVM 383

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N  T+LSVL AC+   AL  G+ IH++I +     ++V +  SLI MYA+CG++  A ++
Sbjct: 384 NRTTYLSVLNACSTSKALGAGELIHSHISEVGHS-SDVQIGNSLISMYARCGDLPRAREL 442

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F+ M  + L SWNA+I+G A      +A+ L+ +M  EG++P  +TF+ +LSAC ++   
Sbjct: 443 FNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAY 502

Query: 453 DIGRQYFNAMIQDYKISPKLQHYG----CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
             G+     MI +  +   ++  G     ++++  R G   EA+ + +    + D   W 
Sbjct: 503 SDGK-----MIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRAR-DIISWN 556

Query: 509 SLLGACRVHGRLELGESVAKHLLELEPE 536
           S++     HG     E+  K  LE++ E
Sbjct: 557 SMIAGHAQHGSY---EAAYKLFLEMKKE 581



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 129/418 (30%), Positives = 225/418 (53%), Gaps = 10/418 (2%)

Query: 129 NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF 188
           N   +  ++++C +  +++E K+IHA +++ G+  D F+   LINMY +   +  A  VF
Sbjct: 81  NRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVF 140

Query: 189 NKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS 248
            K   RD +S+ +LI+ YA +G+   A QLF+EM  +   F+P++ T +++L+AC     
Sbjct: 141 LKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEM--QTAGFIPSKITYISILTACCSPAE 198

Query: 249 LELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGG 308
           LE G  + S I   G   +  V N+L++MY KC DL  AR +F  I +RDV+S+N M+G 
Sbjct: 199 LEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGL 258

Query: 309 YTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN 368
           Y   +  +E + LF QM    I P+ VT++++L A      LD GK IH  +  N    +
Sbjct: 259 YAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHK-LAVNEGLNS 317

Query: 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMI 428
           ++ + T+L  M+ +CG++  A+Q  +    + +  +NA+I+ LA HG  ++A   + +M 
Sbjct: 318 DIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMR 377

Query: 429 GEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488
            +G+  +  T++ VL+AC+ +  L  G +  ++ I +   S  +Q    ++ +  R G  
Sbjct: 378 SDGVVMNRTTYLSVLNACSTSKALGAG-ELIHSHISEVGHSSDVQIGNSLISMYARCGDL 436

Query: 489 DEAEALLKTMEMKPDAAIWTSLL-GACRVHGRLELGESVAKH-LLELEPENPGAYVLL 544
             A  L  TM  K D   W +++ G  R   R + GE++  +  ++ E   PG    L
Sbjct: 437 PRARELFNTMP-KRDLISWNAIIAGYAR---REDRGEAMKLYKQMQSEGVKPGRVTFL 490


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 289/662 (43%), Positives = 418/662 (63%), Gaps = 6/662 (0%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K++H   ++ GL++     + L+ +C     GD+  A   F+ I + + V++N +I   +
Sbjct: 249 KRIHKLTVEEGLNSDIRVGTALVTMCVRC--GDVDSAKQAFKGIADRDVVVYNALIAALA 306

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
                V A + Y RM   G   N  T+  IL +C+   A+  GK IH+H+ + G  SD  
Sbjct: 307 QHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQ 366

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           +  +LI+MYA+ G+L  AR +F     RD +S+ A+I GYA R    +A +L+ +M  + 
Sbjct: 367 IGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQM--QS 424

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           E   P   T + +LSACA+  +   G  +   I   G+ SN H+ NAL++MY +CG L++
Sbjct: 425 EGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLME 484

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A+++FE  + RDVISWN MI G+     Y+ A  LF++M    +EP+++TF SVL  C  
Sbjct: 485 AQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKN 544

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
             AL+LGK IH  I ++  +L+ V+L  +LI+MY +CG+++ A  VF  + ++ + SW A
Sbjct: 545 PEALELGKQIHGRITESGLQLD-VNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTA 603

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
           MI G A  G+  KA+ LF +M  EG +P D  TF  +LSACNHAGL+  G Q F++M  +
Sbjct: 604 MIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESE 663

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
           Y + P ++HYGC+V LLGRA  F EAE L+  M   PDAA+W +LLGACR+HG + L E 
Sbjct: 664 YGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEH 723

Query: 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVH 585
            A + L+L   NP  Y+LLSN+YA AGRWDDVA IR  +  +G++K PG S IEV +++H
Sbjct: 724 AANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIH 783

Query: 586 EFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAI 645
           EF+  D+ HP++  IY  L  +   +E++G+ PDT  VL+D+ +  +E +L  HSE+LAI
Sbjct: 784 EFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAI 843

Query: 646 AYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCND 705
           AYGLI T PGT IRI KNLR+CG+CH+A+K ISK+  REIIARD NRFH FK+G CSC D
Sbjct: 844 AYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCED 903

Query: 706 YW 707
           YW
Sbjct: 904 YW 905



 Score =  246 bits (628), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 155/513 (30%), Positives = 266/513 (51%), Gaps = 20/513 (3%)

Query: 34  LALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           +ALL  CT    +   K++H+Q+++ G+    F LS L+    V     L  A  VF+ +
Sbjct: 31  VALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIF-LSNLLINMYVKCRSVLD-AHQVFKEM 88

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
              + + WN++I  ++       A + +  M  +GF+PN  T+  IL +C   + +  GK
Sbjct: 89  PRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGK 148

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           +IH+ ++K G + DP V  SL++MY + G+L  AR VF   S RD VSY  ++  YA + 
Sbjct: 149 KIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKA 208

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
           Y+ +   LF +M    E   P++ T + +L A      L+ G  +  L    GL S++ V
Sbjct: 209 YVKECLGLFGQMS--SEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRV 266

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
             AL+ M  +CGD+  A+  F+ I  RDV+ +N +I          EA   + +M    +
Sbjct: 267 GTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGV 326

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
             N  T+LS+L AC+   AL+ GK IH++I ++    ++V +  +LI MYA+CG++  A 
Sbjct: 327 ALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHS-SDVQIGNALISMYARCGDLPKAR 385

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           ++F  M  + L SWNA+I+G A      +A+ L+ +M  EG++P  +TF+ +LSAC ++ 
Sbjct: 386 ELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSS 445

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYG----CMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
               G+     MI +  +   ++  G     ++++  R G   EA+ + +  + + D   
Sbjct: 446 AYADGK-----MIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQAR-DVIS 499

Query: 507 WTSLLGACRVHGRLELGESVAKHLL--ELEPEN 537
           W S++     HG  E    + + +   ELEP+N
Sbjct: 500 WNSMIAGHAQHGSYETAYKLFQEMQNEELEPDN 532



 Score =  222 bits (565), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 138/423 (32%), Positives = 231/423 (54%), Gaps = 12/423 (2%)

Query: 132 TFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKS 191
           T+  +L++C +   + E K+IHA +++ G+  D F+   LINMY +   +  A  VF + 
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEM 88

Query: 192 SLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL 251
             RD +S+ +LI+ YA +G+   A QLF+EM  +   F+PN+ T +++L+AC     LE 
Sbjct: 89  PRRDVISWNSLISCYAQQGFKKKAFQLFEEM--QNAGFIPNKITYISILTACYSPAELEN 146

Query: 252 GNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311
           G  + S I   G   +  V N+L+ MY KCGDL +AR +F  I  RDV+S+N M+G Y  
Sbjct: 147 GKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQ 206

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN-NV 370
            +  KE L LF QM    I P+ VT++++L A      LD GK IH    +  + LN ++
Sbjct: 207 KAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVE--EGLNSDI 264

Query: 371 SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE 430
            + T+L+ M  +CG++ +A+Q F G+  + +  +NA+I+ LA HG   +A   + RM  +
Sbjct: 265 RVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSD 324

Query: 431 GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
           G+  +  T++ +L+AC+ +  L+ G+   ++ I +   S  +Q    ++ +  R G   +
Sbjct: 325 GVALNRTTYLSILNACSTSKALEAGK-LIHSHISEDGHSSDVQIGNALISMYARCGDLPK 383

Query: 491 AEALLKTMEMKPDAAIWTSLL-GACRVHGRLELGESVAKH-LLELEPENPGAYVLLSNMY 548
           A  L  TM  K D   W +++ G  R   R + GE++  +  ++ E   PG    L  + 
Sbjct: 384 ARELFYTMP-KRDLISWNAIIAGYAR---REDRGEAMRLYKQMQSEGVKPGRVTFLHLLS 439

Query: 549 AGA 551
           A A
Sbjct: 440 ACA 442



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 110/400 (27%), Positives = 188/400 (47%), Gaps = 38/400 (9%)

Query: 232 NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLF 291
           + +T V +L  C     L     + + +   G+G ++ ++N LI+MY KC  ++ A  +F
Sbjct: 26  DRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVF 85

Query: 292 ESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALD 351
           + + +RDVISWN +I  Y      K+A  LF +M  +   PN +T++S+L AC     L+
Sbjct: 86  KEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELE 145

Query: 352 LGKWIHAYIDK-NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISG 410
            GK IH+ I K  +Q+  +  +  SL+ MY KCG++  A QVF G+  + + S+N M+  
Sbjct: 146 NGKKIHSQIIKAGYQR--DPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGL 203

Query: 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470
            A      + L LF +M  EG+ PD +T++ +L A     +LD G++     +++  ++ 
Sbjct: 204 YAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEE-GLNS 262

Query: 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHL 530
            ++    +V +  R G  D A+   K +  + D  ++ +L+ A   HG            
Sbjct: 263 DIRVGTALVTMCVRCGDVDSAKQAFKGIADR-DVVVYNALIAALAQHG------------ 309

Query: 531 LELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS---IEVGSVVHEF 587
                 N  A+     M     R D VA  RT      +  +  CS+   +E G ++H  
Sbjct: 310 -----HNVEAFEQYYRM-----RSDGVALNRTTY----LSILNACSTSKALEAGKLIHSH 355

Query: 588 LVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
           +  D  H     I   L  + A   + G +P   E+ Y M
Sbjct: 356 ISEDG-HSSDVQIGNALISMYA---RCGDLPKARELFYTM 391


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 290/711 (40%), Positives = 444/711 (62%), Gaps = 14/711 (1%)

Query: 1   MALPPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTG-LH 59
           M+L  ++ TL P      PSS   +  LQ    L  L+   ++    Q+H+ +   G L 
Sbjct: 1   MSLLKTTATLIPK-----PSSTSTFDSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLR 55

Query: 60  NTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYV 119
              +  +KL    AV   G + YA  +F+ I   N  +WN++IRG++ ++SP  A+  Y+
Sbjct: 56  RNTYLATKLAACYAVC--GHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYL 113

Query: 120 RMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNG 179
           +M+  G  P+ +T+PF+LK+C  +     G+++HA V+  GLE D +V  S+++MY + G
Sbjct: 114 KMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFG 173

Query: 180 ELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTV 239
           ++E+AR+VF++  +RD  S+  +++G+   G    A ++F +M  R + FV + +T++ +
Sbjct: 174 DVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDM--RRDGFVGDRTTLLAL 231

Query: 240 LSACAHMGSLELGNWVCSLIEGHGLGS---NLHVTNALIDMYSKCGDLVKARDLFESIEK 296
           LSAC  +  L++G  +   +  +G      N  + N++IDMY  C  +  AR LFE +  
Sbjct: 232 LSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRV 291

Query: 297 RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
           +DV+SWN +I GY    D  +AL LF +M+     P++VT +SVL AC  + AL LG  +
Sbjct: 292 KDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATV 351

Query: 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGK 416
            +Y+ K    +N V + T+LI MYA CG++  A +VFD M  K L +   M++G  +HG+
Sbjct: 352 QSYVVKRGYVVN-VVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGR 410

Query: 417 ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG 476
             +A+S+F  M+G+G+ PD+  F  VLSAC+H+GL+D G++ F  M +DY + P+  HY 
Sbjct: 411 GREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYS 470

Query: 477 CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536
           C+VDLLGRAG  DEA A+++ M++KP+  +WT+LL ACR+H  ++L    A+ L EL P+
Sbjct: 471 CLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPD 530

Query: 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQ 596
               YV LSN+YA   RW+DV  +R  +  + ++K P  S +E+  +VH+F VGD  H Q
Sbjct: 531 GVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQ 590

Query: 597 SKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGT 656
           S  IY  L +++  L+K+G+ PDTS VLYD++EE KE  L  HSE+LA+A+ LI+T PGT
Sbjct: 591 SDDIYAKLKDLNEQLKKAGYKPDTSLVLYDVEEEIKEKMLWDHSERLALAFALINTGPGT 650

Query: 657 TIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           TIRI KNLRVCG+CH+  K+ISK+ NREII RD  RFHHF+DG CSC  YW
Sbjct: 651 TIRITKNLRVCGDCHTVIKMISKLTNREIIMRDICRFHHFRDGLCSCGGYW 701


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 294/677 (43%), Positives = 414/677 (61%), Gaps = 8/677 (1%)

Query: 34   LALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
            L LLS C N     + K +H  I+++G+ +     + L+ +      G L  A  VFE  
Sbjct: 435  LHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNM--YRRCGSLMEAQNVFEGT 492

Query: 91   REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            +  + + WN++I GH+   S   A K +  M      P+  TF  +L  C    A+  GK
Sbjct: 493  QARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGK 552

Query: 151  QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            QIH  + + GL+ D  +  +LINMY + G L+ AR VF+    RD +S+TA+I G A +G
Sbjct: 553  QIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQG 612

Query: 211  YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
                A +LF +M  + E F P +ST  ++L  C     L+ G  V + I   G   +  V
Sbjct: 613  EDMKAIELFWQM--QNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGV 670

Query: 271  TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
             NALI  YSK G +  AR++F+ +  RD++SWN +I GY      + A+    QM + ++
Sbjct: 671  GNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDV 730

Query: 331  EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
             PN  +F+S+L AC+   AL+ GK +HA I K   +  +V +  +LI MYAKCG+   A+
Sbjct: 731  VPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQ-GDVRVGAALISMYAKCGSQGEAQ 789

Query: 391  QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
            +VFD +  K + +WNAMI+  A HG A KAL  F+ M  EG++PD  TF  +LSACNHAG
Sbjct: 790  EVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAG 849

Query: 451  LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
            L+  G Q F++M  +Y + P ++HYGC+V LLGRA  F EAE L+  M   PDAA+W +L
Sbjct: 850  LVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETL 909

Query: 511  LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
            LGACR+HG + L E  A + L+L   NP  Y+LLSN+YA AGRWDDVA IR  +  +G++
Sbjct: 910  LGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIR 969

Query: 571  KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
            K PG S IEV +++HEF+  D+ HP++  IY  L  +   +E++G+ PDT  VL+D+ + 
Sbjct: 970  KEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKA 1029

Query: 631  WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
             +E +L  HSE+LAIAYGLI T PGT IRI KNLR+CG+CH+A+K ISK+  REIIARD 
Sbjct: 1030 HQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDS 1089

Query: 691  NRFHHFKDGNCSCNDYW 707
            NRFH FK+G CSC DYW
Sbjct: 1090 NRFHSFKNGKCSCEDYW 1106



 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 163/488 (33%), Positives = 269/488 (55%), Gaps = 10/488 (2%)

Query: 34  LALLSKC---TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           +++L+ C     ++N K++HSQIIK G        + L+ +      GDL  A  VF  I
Sbjct: 132 ISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSM--YGKCGDLPRARQVFAGI 189

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
              + V +N ++  ++  +     +  + +M   G  P+  T+  +L +    S + EGK
Sbjct: 190 SPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGK 249

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           +IH   ++ GL SD  V T+L+ M  + G+++SA+  F  ++ RD V Y ALI   A  G
Sbjct: 250 RIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHG 309

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
           +  +A + +  M  R +    N +T +++L+AC+   +LE G  + S I   G  S++ +
Sbjct: 310 HNVEAFEQYYRM--RSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQI 367

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            NALI MY++CGDL KAR+LF ++ KRD+ISWN +I GY    D  EA+ L++QM    +
Sbjct: 368 GNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGV 427

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           +P  VTFL +L ACA   A   GK IH  I ++  K +N  L  +L++MY +CG++  A+
Sbjct: 428 KPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIK-SNGHLANALMNMYRRCGSLMEAQ 486

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
            VF+G   + + SWN+MI+G A HG  + A  LF  M  E L+PD+ITF  VLS C +  
Sbjct: 487 NVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPE 546

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
            L++G+Q  +  I +  +   +     ++++  R G   +A  +  +++ + D   WT++
Sbjct: 547 ALELGKQ-IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAM 604

Query: 511 LGACRVHG 518
           +G C   G
Sbjct: 605 IGGCADQG 612



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 153/513 (29%), Positives = 264/513 (51%), Gaps = 20/513 (3%)

Query: 34  LALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           +ALL  CT    +   K++H+Q+++  +    F LS L+    V     L  A  VF+ +
Sbjct: 31  VALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIF-LSNLLINMYVKCRSVLD-AHQVFKEM 88

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
              + + WN++I  ++       A + +  M  +GF+PN  T+  IL +C   + +  GK
Sbjct: 89  PRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGK 148

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           +IH+ ++K G + DP V  SL++MY + G+L  AR VF   S RD VSY  ++  YA + 
Sbjct: 149 KIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKA 208

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
           Y+ +   LF +M    E   P++ T + +L A      L+ G  +  L    GL S++ V
Sbjct: 209 YVKECLGLFGQMS--SEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRV 266

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
             AL+ M  +CGD+  A+  F+    RDV+ +N +I          EA   + +M    +
Sbjct: 267 GTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGV 326

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
             N  T+LS+L AC+   AL+ GK IH++I ++    ++V +  +LI MYA+CG++  A 
Sbjct: 327 ALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHS-SDVQIGNALISMYARCGDLPKAR 385

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           ++F  M  + L SWNA+I+G A      +A+ L+ +M  EG++P  +TF+ +LSAC ++ 
Sbjct: 386 ELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSS 445

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYG----CMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
               G+     MI +  +   ++  G     ++++  R G   EA+ + +  + + D   
Sbjct: 446 AYADGK-----MIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQAR-DVIS 499

Query: 507 WTSLLGACRVHGRLELGESVAKHLL--ELEPEN 537
           W S++     HG  E    + + +   ELEP+N
Sbjct: 500 WNSMIAGHAQHGSYETAYKLFQEMQNEELEPDN 532



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 135/416 (32%), Positives = 226/416 (54%), Gaps = 12/416 (2%)

Query: 132 TFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKS 191
           T+  +L++C +   + E K+IHA +++  +  D F+   LINMY +   +  A  VF + 
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEM 88

Query: 192 SLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL 251
             RD +S+ +LI+ YA +G+   A QLF+EM  +   F+PN+ T +++L+AC     LE 
Sbjct: 89  PRRDVISWNSLISCYAQQGFKKKAFQLFEEM--QNAGFIPNKITYISILTACYSPAELEN 146

Query: 252 GNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311
           G  + S I   G   +  V N+L+ MY KCGDL +AR +F  I  RDV+S+N M+G Y  
Sbjct: 147 GKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQ 206

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN-NV 370
            +  KE L LF QM    I P+ VT++++L A      LD GK IH    +  + LN ++
Sbjct: 207 KAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVE--EGLNSDI 264

Query: 371 SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE 430
            + T+L+ M  +CG++ +A+Q F G   + +  +NA+I+ LA HG   +A   + RM  +
Sbjct: 265 RVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSD 324

Query: 431 GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
           G+  +  T++ +L+AC+ +  L+ G+   ++ I +   S  +Q    ++ +  R G   +
Sbjct: 325 GVALNRTTYLSILNACSTSKALEAGK-LIHSHISEDGHSSDVQIGNALISMYARCGDLPK 383

Query: 491 AEALLKTMEMKPDAAIWTSLL-GACRVHGRLELGESVAKH-LLELEPENPGAYVLL 544
           A  L  TM  K D   W +++ G  R   R + GE++  +  ++ E   PG    L
Sbjct: 384 ARELFYTMP-KRDLISWNAIIAGYAR---REDRGEAMRLYKQMQSEGVKPGRVTFL 435


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  573 bits (1476), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 283/681 (41%), Positives = 420/681 (61%), Gaps = 58/681 (8%)

Query: 28  LQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVF 87
           +   P L+L   C +M ++KQ+HS+ IKTG+       +K++  C    FGD+ YA  +F
Sbjct: 12  VTENPPLSLFETCKSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLF 71

Query: 88  ETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAIS 147
           +TI EP+   WN + +G+S  + P + +  Y+ M+     P+ YT+PF+ K   +  A+ 
Sbjct: 72  DTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQ 131

Query: 148 EGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA 207
            G+++H HV+K GL+S         N++A N                      ALI  Y+
Sbjct: 132 LGRELHCHVVKYGLDS---------NVFAHN----------------------ALINMYS 160

Query: 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG-LGS 266
             G +D AR +FD         +  +S VVT               W  ++I G+  +  
Sbjct: 161 LCGLIDMARGIFD---------MSCKSDVVT---------------WN-AMISGYNRIKK 195

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML 326
           ++    A++  +   G +  AR  F  + +RD +SW  MI GY   + YKEALMLFR+M 
Sbjct: 196 DVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQ 255

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
            S I+P++ T +SVL ACA LGAL+LG+WI  YIDKN  K N+  +  +LIDMY KCGN+
Sbjct: 256 TSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVK-NDTFVGNALIDMYFKCGNV 314

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
           + A  +F+ +  +   +W AM+ GLA++G  ++AL++FS+M+   + PD++T+VGVLSAC
Sbjct: 315 EMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSAC 374

Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
            H G++D G+++F +M   + I P + HYGCMVDLLG+AG   EA  ++K M MKP++ +
Sbjct: 375 THTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIV 434

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
           W +LLGACR+H   E+ E   + +LELEP N   YVL  N+YA   +WD +  +R  + D
Sbjct: 435 WGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMD 494

Query: 567 KGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYD 626
           +G+KK PGCS IE+  +VHEF+ GD+ HPQ+K IY  L+++ + L+ +G+ P+TSEV  D
Sbjct: 495 RGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYSPNTSEVFLD 554

Query: 627 MDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREII 686
           + EE KE A+  HSEKLAIA+GLI++ PG TIRIVKNLR+C +CH   KL+SK+++RE+I
Sbjct: 555 IAEEDKENAVYRHSEKLAIAFGLINSGPGVTIRIVKNLRMCIDCHHVAKLVSKVYDREVI 614

Query: 687 ARDRNRFHHFKDGNCSCNDYW 707
            RDR RFHHF+ G+CSC DYW
Sbjct: 615 VRDRTRFHHFRHGSCSCKDYW 635


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 289/676 (42%), Positives = 424/676 (62%), Gaps = 8/676 (1%)

Query: 35  ALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
            LL +C  +++++Q   VH+ I+K+G+   ++  + L+ + A    G L+ A  VF+ IR
Sbjct: 101 GLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYA--KCGSLTDARRVFDGIR 158

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           + N V W  +I      +  + A K Y  M L+G  P+  TF  +L +      +  G++
Sbjct: 159 DRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQK 218

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +H  + K GLE +P V TSL+ MYA+ G++  A+++F+K   ++ V++T LI GYA +G 
Sbjct: 219 VHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQ 278

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
           +D A +L ++M  ++    PN+ T  ++L  C    +LE G  V   I   G G  + V 
Sbjct: 279 VDVALELLEKM--QQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVV 336

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           NALI MY KCG L +AR LF  +  RDV++W  M+ GY     + EA+ LFR+M Q  I+
Sbjct: 337 NALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIK 396

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+ +TF S L +C+    L  GK IH  +      L+ V L ++L+ MYAKCG++  A  
Sbjct: 397 PDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLD-VYLQSALVSMYAKCGSMDDARL 455

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VF+ M  + + +W AMI+G A HG+  +AL  F +M  +G++PD +TF  VLSAC H GL
Sbjct: 456 VFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGL 515

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           ++ GR++F +M  DY I P ++HY C VDLLGRAG  +EAE ++ TM  +P  ++W +LL
Sbjct: 516 VEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALL 575

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
            ACR+H  +E GE  A+++L+L+P++ GAYV LSN+YA AGR++D   +R  +  + + K
Sbjct: 576 SACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVK 635

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
            PG S IEV   VH F V DK HP++K IY  L ++   +++ G+VPDT  VL+D+DEE 
Sbjct: 636 EPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELGKLTEQIKEQGYVPDTRFVLHDVDEEQ 695

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           K   L  HSE+LAI YGL+ T PGT IRIVKNLRVCG+CH+A+K ISK+  REIIARD +
Sbjct: 696 KVQTLCSHSERLAITYGLMKTPPGTPIRIVKNLRVCGDCHTASKFISKVVGREIIARDAH 755

Query: 692 RFHHFKDGNCSCNDYW 707
           RFHHF DG CSC D+W
Sbjct: 756 RFHHFVDGVCSCGDFW 771



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 128/416 (30%), Positives = 227/416 (54%), Gaps = 15/416 (3%)

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           MIL G    +  F  +L+ CA++ ++ +G+++HA +LK G++ + ++  +L++MYA+ G 
Sbjct: 87  MILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGS 146

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
           L  AR VF+    R+ VS+TA+I  + +     +A + ++ M +      P++ T V++L
Sbjct: 147 LTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKL--AGCKPDKVTFVSLL 204

Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVI 300
           +A  +   L++G  V   I   GL     V  +L+ MY+KCGD+ KA+ +F+ + +++V+
Sbjct: 205 NAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVV 264

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           +W ++I GY        AL L  +M Q+ + PN +T+ S+L  C    AL+ GK +H YI
Sbjct: 265 TWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYI 324

Query: 361 DKNHQKLNNVSLWT--SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKAD 418
               Q      +W   +LI MY KCG +K A ++F  + ++ + +W AM++G A  G  D
Sbjct: 325 I---QSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHD 381

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ-DYKISPKLQHYGC 477
           +A+ LF RM  +G++PD +TF   L++C+    L  G+     ++   Y +   LQ    
Sbjct: 382 EAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQ--SA 439

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR----LELGESVAKH 529
           +V +  + G  D+A  +   M  + +   WT+++  C  HGR    LE  E + K 
Sbjct: 440 LVSMYAKCGSMDDARLVFNQMSER-NVVAWTAMITGCAQHGRCREALEYFEQMKKQ 494



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 107/218 (49%), Gaps = 9/218 (4%)

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
           KEAL +   M+          F  +L  CA L +L+ G+ +HA I K+  + N   L  +
Sbjct: 78  KEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY-LENT 136

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           L+ MYAKCG++  A +VFDG+  + + SW AMI       +  +A   +  M   G +PD
Sbjct: 137 LLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPD 196

Query: 436 DITFVGVLSACNHAGLLDIGRQ-YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494
            +TFV +L+A  +  LL +G++ +        ++ P++     +V +  + G   +A+ +
Sbjct: 197 KVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVG--TSLVGMYAKCGDISKAQVI 254

Query: 495 LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
              +  K +   WT L+      G+++    VA  LLE
Sbjct: 255 FDKLPEK-NVVTWTLLIAGYAQQGQVD----VALELLE 287


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  570 bits (1469), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 281/677 (41%), Positives = 425/677 (62%), Gaps = 34/677 (5%)

Query: 31  QPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           +  ++LL KC +M  +KQ+HS  IK GL +     +++I  C     G+++YA  VF+TI
Sbjct: 8   ESPISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTI 67

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
             P+  IWN +I+G+S  S P   +  Y+ M+ S   P+ +TFPF LK   +  A+  GK
Sbjct: 68  PHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGK 127

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           ++  H +K G +S+ FV  + I+M++  G ++ A  VF+     + V++  +++GY    
Sbjct: 128 ELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYN--- 184

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
                         R + F    S ++ VLSAC+ +  LE G  +   I G         
Sbjct: 185 --------------RVKQF--KISKMLLVLSACSKLKDLEWGKHIFKYING--------- 219

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
              +  M++ CG++ +A+ +F++++ RDV+SW  MI GY   + +  AL LFR+M  SN+
Sbjct: 220 -GIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNV 278

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           +P++ T +S+L ACA LGAL+LG+W+   IDKN  K N+  +  +L+DMY KCGN++ A+
Sbjct: 279 KPDEFTMVSILIACALLGALELGEWVKTCIDKNSNK-NDSFVGNALVDMYFKCGNVRKAK 337

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           +VF  M  K   +W  MI GLA++G  ++AL++FS MI   + PD+IT++GVL AC    
Sbjct: 338 KVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASVTPDEITYIGVLCAC---- 393

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           ++D G+ +F  M   + I P + HYGCMVDLLG  G  +EA  ++  M +KP++ +W S 
Sbjct: 394 MVDKGKSFFTNMTMQHGIKPTVTHYGCMVDLLGCVGCLEEALEVIVNMPVKPNSIVWGSP 453

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           LGACRVH  ++L +  AK +LELEPEN   YVLL N+YA + +W+++  +R  + ++G+K
Sbjct: 454 LGACRVHKNVQLADMAAKQILELEPENGAVYVLLCNIYAASKKWENLCQVRKLMMERGIK 513

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           K PGCS +E+   V+EF+ GD+ HPQSK IY  L+ +   L K+G+ PDTSEV  D+ EE
Sbjct: 514 KTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQGLIKAGYSPDTSEVFLDLGEE 573

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KE AL  HSEKLAIAY LIS+ PG TIRIVKNLR+C +CH   KL+S+ +NRE+I +D+
Sbjct: 574 DKETALYRHSEKLAIAYALISSGPGVTIRIVKNLRMCVDCHHMAKLVSQAYNRELIVKDK 633

Query: 691 NRFHHFKDGNCSCNDYW 707
            RFHHF+ G+CSCN++W
Sbjct: 634 TRFHHFRHGSCSCNNFW 650


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 290/670 (43%), Positives = 418/670 (62%), Gaps = 7/670 (1%)

Query: 39  KCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVF-ETIREPNQVI 97
           KC  +++ K  H ++++  LH+    LS ++    ++   +  Y +LVF +T    N  +
Sbjct: 15  KC--LKHAKLAHCRLLRLNLHHDNDLLSIILR-STINFSNNAQYPILVFHKTPTNSNTFL 71

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
           +N +IRG         A+  Y  M  +  VP+++TF F+LK+CA+++    G  IH+ V 
Sbjct: 72  YNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVF 131

Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ 217
           K G + D FV T+++  Y++ G L  A  VF+   +++ VS+T +I G    G   +A  
Sbjct: 132 KTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVD 191

Query: 218 LFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDM 277
           LF    + E    P+   +V VL ACA +G LE G W+   +   GL  N+ V  +L+DM
Sbjct: 192 LFR--GLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDM 249

Query: 278 YSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTF 337
           Y+KCG + +AR +F+ + ++D++ W+ MI GY      +EA+ LF +M + N+ P+    
Sbjct: 250 YTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAM 309

Query: 338 LSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG 397
           +  L +CA LGAL+LG W    ++   + L+N  L TSLID YAKCG+++ A  V+  M 
Sbjct: 310 VGALSSCASLGALELGNWAKGLMNYE-EFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMK 368

Query: 398 YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
            K    +NA+ISGLAM+G+   A  +F +M   G+ P++ TFVG+L  C HAGL+D GR 
Sbjct: 369 EKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRH 428

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
           YFN+M  D+ ++P ++HYGCMVDLL RAG  DEA  L+K M MK +  +W SLLG CR+H
Sbjct: 429 YFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLH 488

Query: 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577
              +L E V K L+ELEP N G YVLLSN+Y+ + RWD+   IR+ +N+KGM+K+PG S 
Sbjct: 489 RETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSW 548

Query: 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALS 637
           +EV  VVHEFLVGD  HP S+ IYE L+ +   L+++G+ P T  VL+D++EE KE  L 
Sbjct: 549 VEVDGVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEFVLFDVEEEEKEHFLG 608

Query: 638 HHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFK 697
            HSEKLA+A+ LIST     IR+VKNLRVCG+CH A K ISK+  REI+ RD NRFH F 
Sbjct: 609 CHSEKLAVAFALISTGAKYVIRVVKNLRVCGDCHEAIKHISKVTGREIVIRDNNRFHCFS 668

Query: 698 DGNCSCNDYW 707
           DG CSC DYW
Sbjct: 669 DGACSCRDYW 678


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  567 bits (1460), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 289/678 (42%), Positives = 425/678 (62%), Gaps = 11/678 (1%)

Query: 35  ALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
            LL +C  +++++Q   VH+ I+K+G+   ++  + L+ + A    G L+ A  VF++IR
Sbjct: 52  GLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYA--KCGSLTDARRVFDSIR 109

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           + N V W  +I      +  + A K Y  M L+G  P+  TF  +L +      +  G++
Sbjct: 110 DRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQK 169

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +H  +++ GLE +P V TSL+ MYA+ G++  AR++F++   ++ V++T LI GYA +G 
Sbjct: 170 VHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQ 229

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
           +D A +L + M  ++    PN+ T  ++L  C    +LE G  V   I   G G  L V 
Sbjct: 230 VDVALELLETM--QQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVV 287

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N+LI MY KCG L +AR LF  +  RDV++W  M+ GY     + EA+ LFR+M Q  I+
Sbjct: 288 NSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIK 347

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN-NVSLWTSLIDMYAKCGNIKAAE 390
           P+ +TF SVL +C+    L  GK IH  +   H   N +V L ++L+ MYAKCG++  A 
Sbjct: 348 PDKMTFTSVLTSCSSPAFLQEGKRIHQQL--VHAGYNLDVYLQSALVSMYAKCGSMDDAS 405

Query: 391 QVFDGMGYKTLASWNAMISGL-AMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
            VF+ M  + + +W A+I+G  A HG+  +AL  F +M  +G++PD +TF  VLSAC H 
Sbjct: 406 LVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHV 465

Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
           GL++ GR++F +M  DY I P ++HY C VDLLGRAG  +EAE ++ +M   P  ++W +
Sbjct: 466 GLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGA 525

Query: 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
           LL ACRVH  +E GE  A+++L+L+P++ GAYV LS++YA AGR++D   +R  +  + +
Sbjct: 526 LLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDV 585

Query: 570 KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE 629
            K PG S IEV   VH F V DK HP+S+ IY  L ++   +++ G+VPDT  VL+D+DE
Sbjct: 586 VKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVELGKLTEQIKEMGYVPDTRFVLHDVDE 645

Query: 630 EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
           E KE  L  HSE+LAI YGL+ T PG  IRIVKNLRVCG+CH+ATK ISK+  REIIARD
Sbjct: 646 EQKERILFSHSERLAITYGLMKTPPGMPIRIVKNLRVCGDCHTATKFISKVVGREIIARD 705

Query: 690 RNRFHHFKDGNCSCNDYW 707
             RFHHF DG CSC D+W
Sbjct: 706 AQRFHHFADGVCSCGDFW 723



 Score =  235 bits (600), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 130/403 (32%), Positives = 225/403 (55%), Gaps = 12/403 (2%)

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           MIL G    +  F  +L+ CA++ ++ +G+++HA +LK G++ + ++  +L++MYA+ G 
Sbjct: 38  MILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGS 97

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
           L  AR VF+    R+ VS+TA+I  + +     +A + ++ M +      P++ T V++L
Sbjct: 98  LTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKL--AGCKPDKVTFVSLL 155

Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVI 300
           +A  +   L+LG  V   I   GL     V  +L+ MY+KCGD+ KAR +F+ + +++V+
Sbjct: 156 NAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVV 215

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           +W ++I GY        AL L   M Q+ + PN +TF S+L  C    AL+ GK +H YI
Sbjct: 216 TWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYI 275

Query: 361 DKNHQKLNNVSLWT--SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKAD 418
               Q      LW   SLI MY KCG ++ A ++F  + ++ + +W AM++G A  G  D
Sbjct: 276 I---QSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHD 332

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ-DYKISPKLQHYGC 477
           +A++LF RM  +G++PD +TF  VL++C+    L  G++    ++   Y +   LQ    
Sbjct: 333 EAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQ--SA 390

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL-GACRVHGR 519
           +V +  + G  D+A  +   M  + +   WT+++ G C  HGR
Sbjct: 391 LVSMYAKCGSMDDASLVFNQMSER-NVVAWTAIITGCCAQHGR 432



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 116/254 (45%), Gaps = 34/254 (13%)

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
           T   KEAL +   M+          F  +L  CA L +L+ G+ +HA I K+  + N   
Sbjct: 25  TGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY- 83

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
           L  +L+ MYAKCG++  A +VFD +  + + SW AMI       K  +A   +  M   G
Sbjct: 84  LENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAG 143

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ-DYKISPKL------QHYGC------- 477
            +PD +TFV +L+A  +  LL +G++    +++   ++ P++       +  C       
Sbjct: 144 CKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKAR 203

Query: 478 ----------------MVDLLGRAGLFDEAEALLKTM---EMKPDAAIWTSLLGACRVHG 518
                           ++    + G  D A  LL+TM   E+ P+   + S+L  C    
Sbjct: 204 VIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPA 263

Query: 519 RLELGESVAKHLLE 532
            LE G+ V +++++
Sbjct: 264 ALEHGKKVHRYIIQ 277


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  566 bits (1459), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 288/678 (42%), Positives = 431/678 (63%), Gaps = 10/678 (1%)

Query: 35  ALLSKCTNMQNIKQ---VHSQIIKTG-LHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           ALL   TN ++ KQ   +H+ +I    L N  +  +KL    A    G +S A ++F+ I
Sbjct: 64  ALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYA--GCGLMSQAEVIFDGI 121

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
              N  +WN +IRG++ +  P+ ++  Y  M+  G   + +T+PF+LK+C  +  +  G+
Sbjct: 122 VLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGR 181

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           ++H+ V+  GLESD +V  SL+ MYA+ G++ +AR+VF++ + RD  S+  +I+GYA   
Sbjct: 182 RVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNA 241

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS-NLH 269
               A  +FD M   +     + +T++ +LSACA + +++ G  +      + +G+ N  
Sbjct: 242 DSGTAFLVFDLMG--KAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKF 299

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
            TN+LI+MY  C  +V AR LFE +  +D +SWN MI GY    D  E+L LFR+M    
Sbjct: 300 FTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDG 359

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
             P+ VTF++VL AC  + AL  G  IH+Y+ K     N + + T+L+DMY+KCG++  +
Sbjct: 360 SGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTI-VGTALVDMYSKCGSLACS 418

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
            +VFD M  K+L SW+AM++G  +HG+  +A+S+   M    + PD+  F  +LSAC+HA
Sbjct: 419 RRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHA 478

Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
           GL+  G++ F  M ++Y + P L HY CMVDLLGRAG  DEA  +++TME+KP + IW +
Sbjct: 479 GLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAA 538

Query: 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
           LL A R+H  ++L E  A+ + ++ P+   +Y+ LSN+YA   RWDDV  +R  +  KG+
Sbjct: 539 LLTASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGL 598

Query: 570 KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE 629
           KK PGCS IE+ ++VH FLVGDK H Q++ IY  L+E+   L+++G+ PDTS V YD++E
Sbjct: 599 KKSPGCSFIELDNMVHRFLVGDKSHQQTEDIYAKLNELKQQLKEAGYKPDTSLVFYDVEE 658

Query: 630 EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
           E KE  L  HSE+LAIA+ LI+T PGT IRI KNLRVCG+CH+ TKLIS++  REII RD
Sbjct: 659 EVKEKMLWDHSERLAIAFALINTGPGTVIRITKNLRVCGDCHTVTKLISELTGREIIMRD 718

Query: 690 RNRFHHFKDGNCSCNDYW 707
            +RFHHF  G CSC DYW
Sbjct: 719 IHRFHHFIKGFCSCGDYW 736


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 286/677 (42%), Positives = 422/677 (62%), Gaps = 8/677 (1%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           +++LS C++   +   +++H ++++ GL N     + LI + A    G +  A  VF+ +
Sbjct: 133 VSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYA--KCGSVRDARRVFDAM 190

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
              ++V W  +   ++ S     ++K Y  M+     P+  T+  +L +C  ++A+ +GK
Sbjct: 191 ASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGK 250

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           QIHAH+++    SD  V T+L  MY + G  + AR VF   S RD +++  +I G+   G
Sbjct: 251 QIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSG 310

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
            L++A   F  M   EE   P+ +T  TVLSACA  G L  G  + +     GL S++  
Sbjct: 311 QLEEAHGTFHRML--EEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRF 368

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            NALI+MYSK G +  AR +F+ + KRDV+SW  ++G Y       E+   F+QMLQ  +
Sbjct: 369 GNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGV 428

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           + N +T++ VL AC+   AL  GK IHA + K    L ++++  +L+ MY KCG+++ A 
Sbjct: 429 KANKITYMCVLKACSNPVALKWGKEIHAEVVKAGL-LADLAVTNALMSMYFKCGSVEDAI 487

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           +VF+GM  + + +WN +I GL  +G+  +AL  +  M  EG++P+  TFV VLSAC    
Sbjct: 488 RVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCN 547

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L++ GR+ F  M +DY I P  +HY CMVD+L RAG   EAE ++ T+ +KP AA+W +L
Sbjct: 548 LVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGAL 607

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           L ACR+H  +E+GE  A+H L+LEP+N G YV LS +YA AG W DVA +R  + ++G+K
Sbjct: 608 LAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVK 667

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           K PG S IE+   VH F+  D+ HP+++ IY  L+ +   ++  G+VPDT  V++D+D+E
Sbjct: 668 KEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELETLKKQMKSLGYVPDTRFVMHDLDDE 727

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KE A+ HHSEKLAIAYGLIST PGT IRI KNLRVC +CH+ATK ISKI  REIIARD 
Sbjct: 728 GKERAVCHHSEKLAIAYGLISTPPGTPIRISKNLRVCTDCHTATKFISKITKREIIARDA 787

Query: 691 NRFHHFKDGNCSCNDYW 707
           +RFHHFK+G CSC DYW
Sbjct: 788 HRFHHFKNGECSCGDYW 804



 Score =  254 bits (650), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 133/384 (34%), Positives = 222/384 (57%), Gaps = 5/384 (1%)

Query: 129 NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF 188
           ++Y +  +L+SC K   ++ GKQ+H H+L+ G++ + ++  +L+ +YA  G +  AR +F
Sbjct: 27  DSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLF 86

Query: 189 NKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS 248
           +K S +  VS+  +I+GYA RG   +A  LF  M  ++E   P++ T V++LSAC+    
Sbjct: 87  DKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLM--QQERLEPDKFTFVSILSACSSPAV 144

Query: 249 LELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGG 308
           L  G  +   +   GL ++  V NALI MY+KCG +  AR +F+++  RD +SW  + G 
Sbjct: 145 LNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGA 204

Query: 309 YTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN 368
           Y  +   +E+L  +  MLQ  + P+ +T+++VL AC  L AL+ GK IHA+I ++    +
Sbjct: 205 YAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYH-S 263

Query: 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMI 428
           +V + T+L  MY KCG  K A +VF+ + Y+ + +WN MI G    G+ ++A   F RM+
Sbjct: 264 DVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRML 323

Query: 429 GEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488
            EG+ PD  T+  VLSAC   G L  G++      +D  +S  ++    ++++  +AG  
Sbjct: 324 EEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVS-DVRFGNALINMYSKAGSM 382

Query: 489 DEAEALLKTMEMKPDAAIWTSLLG 512
            +A  +   M  K D   WT+LLG
Sbjct: 383 KDARQVFDRMP-KRDVVSWTTLLG 405



 Score =  253 bits (647), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 150/489 (30%), Positives = 262/489 (53%), Gaps = 10/489 (2%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           + LL  C   +++   KQVH  I++ G+    +  + L+++ A    G ++ A  +F+  
Sbjct: 32  VKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYA--HCGSVNEARQLFDKF 89

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
              + V WN +I G++       A   +  M      P+ +TF  IL +C+  + ++ G+
Sbjct: 90  SNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGR 149

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           +IH  V++ GL +D  V  +LI+MYA+ G +  AR VF+  + RD VS+T L   YA  G
Sbjct: 150 EIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESG 209

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
           Y +++ + +  M   +E   P+  T + VLSAC  + +LE G  + + I      S++ V
Sbjct: 210 YGEESLKTYHAML--QERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRV 267

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
           + AL  MY KCG    AR++FE +  RDVI+WN MI G+  +   +EA   F +ML+  +
Sbjct: 268 STALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGV 327

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
            P+  T+ +VL ACA  G L  GK IHA   K+   +++V    +LI+MY+K G++K A 
Sbjct: 328 APDRATYTTVLSACARPGGLARGKEIHARAAKDGL-VSDVRFGNALINMYSKAGSMKDAR 386

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           QVFD M  + + SW  ++   A   +  ++ + F +M+ +G++ + IT++ VL AC++  
Sbjct: 387 QVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPV 446

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
            L  G++  +A +    +   L     ++ +  + G  ++A  + + M M+ D   W +L
Sbjct: 447 ALKWGKE-IHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMR-DVVTWNTL 504

Query: 511 LGACRVHGR 519
           +G    +GR
Sbjct: 505 IGGLGQNGR 513


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 289/631 (45%), Positives = 399/631 (63%), Gaps = 4/631 (0%)

Query: 78   GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
            G+   A  +F  ++  + V W+ II     +  P  A+  +  M      PN  T   IL
Sbjct: 378  GETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSIL 437

Query: 138  KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
             +CA +S +  GK IH   +K  ++SD    T+L++MYA+ G   +A   FN+ S RD V
Sbjct: 438  PACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIV 497

Query: 198  SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
            ++ +LI GYA  G   +A  +F ++ +   N  P+  T+V V+ ACA +  L+ G  +  
Sbjct: 498  TWNSLINGYAQIGDPYNAIDMFYKLRLSAIN--PDAGTMVGVVPACALLNDLDQGTCIHG 555

Query: 258  LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYK 316
            LI   G  S+ HV NALIDMY+KCG L  A  LF   +  +D ++WNV+I  Y      K
Sbjct: 556  LIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAK 615

Query: 317  EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
            EA+  F QM   N  PN VTF+SVLPA AYL A   G   HA I +    L+N  +  SL
Sbjct: 616  EAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQ-MGFLSNTLVGNSL 674

Query: 377  IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
            IDMYAKCG +  +E++F+ M +K   SWNAM+SG A+HG  D+A++LFS M    +Q D 
Sbjct: 675  IDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDS 734

Query: 437  ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
            ++FV VLSAC HAGL++ GR+ F++M   Y I P L+HY CMVDLLGRAGLFDE    +K
Sbjct: 735  VSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIK 794

Query: 497  TMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
             M ++PDA +W +LLG+CR+H  ++LGE    HL++LEP NP  +V+LS++YA +GRW D
Sbjct: 795  VMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWAD 854

Query: 557  VATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGF 616
                R+++ND G+KK PGCS +E+ + VH F VGDK HPQ + ++ + + +   +EK G+
Sbjct: 855  AGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGY 914

Query: 617  VPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKL 676
            VPD S VL +++EE KE  L  HSE+LAI + L++T PG+TI+IVKNLRVC +CH+ TK 
Sbjct: 915  VPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKF 974

Query: 677  ISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            ISKI  R II RD  RFHHF+DG CSCNDYW
Sbjct: 975  ISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  248 bits (633), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 162/545 (29%), Positives = 276/545 (50%), Gaps = 27/545 (4%)

Query: 3   LPPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQ 62
           L  S  +++ +   FP  S   Y    + P L  LS C ++  + Q+H+QII +G  +  
Sbjct: 7   LRRSFTSIATAASEFPSLSSSTYTNYLHYPRL--LSSCKHLNPLLQIHAQIIVSGFKH-H 63

Query: 63  FALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI 122
            +++ LI +   S F     A  VF++   P++++WN++IR ++ S     A++ Y  M+
Sbjct: 64  HSITHLINL--YSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMV 121

Query: 123 LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELE 182
             G  P+ YTF F+LK+C     + EG   H  + + GLE D F+   L++MY++ G+L+
Sbjct: 122 EKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLK 181

Query: 183 SARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSA 242
            AR VF+K   RD V++ A+I G +      +A   F  M +      P+  +++ +   
Sbjct: 182 RAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQL--VGVEPSSVSLLNLFPG 239

Query: 243 CAHMGSLELGNWVCSLIEGHGLGSNLH--VTNALIDMYSKCGDLVKARDLFESIEKRDVI 300
              + ++EL    C  I G+    +    V+N LID+YSKCGD+  AR +F+ +  +D +
Sbjct: 240 ICKLSNIEL----CRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDV 295

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           SW  M+ GY H   + E L LF +M   N+  N V+ +S   A A    L+ GK IH   
Sbjct: 296 SWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCA 355

Query: 361 DKNHQKLN-NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADK 419
            +  Q+++ ++ + T L+ MYAKCG  + A+Q+F G+  + L +W+A+I+ L   G  ++
Sbjct: 356 LQ--QRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEE 413

Query: 420 ALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479
           ALSLF  M  + ++P+ +T + +L AC    LL +G+   +       +   L     +V
Sbjct: 414 ALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKS-IHCFTVKADMDSDLSTGTALV 472

Query: 480 DLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK----HLLELEP 535
            +  + G F  A      M  + D   W SL     ++G  ++G+        + L L  
Sbjct: 473 SMYAKCGFFTAALTTFNRMSSR-DIVTWNSL-----INGYAQIGDPYNAIDMFYKLRLSA 526

Query: 536 ENPGA 540
            NP A
Sbjct: 527 INPDA 531


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  563 bits (1450), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 298/704 (42%), Positives = 432/704 (61%), Gaps = 30/704 (4%)

Query: 10  LSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALS 66
           L PSI+ F                L++L  C++   +   K+VH+Q++  G     F   
Sbjct: 154 LEPSIITF----------------LSVLDACSSPAGLNWGKEVHAQVVTAG-----FVSD 192

Query: 67  KLIEICAVSPF---GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMIL 123
             I    VS +   G +  A  VF+ +   +   +N ++ G++ S     A + + RM  
Sbjct: 193 FRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQ 252

Query: 124 SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELES 183
            G  PN  +F  IL  C    A++ GK +HA  +  GL  D  V TSLI MY   G +E 
Sbjct: 253 VGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEG 312

Query: 184 ARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC 243
           AR VF+   +RD VS+T +I GYA  G ++DA  LF  M  +EE   P+  T + +++AC
Sbjct: 313 ARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATM--QEEGIQPDRITYMHIMNAC 370

Query: 244 AHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN 303
           A   +L     + S ++  G G++L V+ AL+ MY+KCG +  AR +F+++ +RDV+SW+
Sbjct: 371 AISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWS 430

Query: 304 VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363
            MIG Y       EA   F  M +SNIEP+ VT++++L AC +LGALD+G  I+    K 
Sbjct: 431 AMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKA 490

Query: 364 HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSL 423
              +++V L  +LI M AK G+++ A  +FD M  + + +WNAMI G ++HG A +AL L
Sbjct: 491 -DLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYL 549

Query: 424 FSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLG 483
           F RM+ E  +P+ +TFVGVLSAC+ AG +D GR++F  +++   I P ++ YGCMVDLLG
Sbjct: 550 FDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLG 609

Query: 484 RAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVL 543
           RAG  DEAE L+K+M +KP ++IW+SLL ACR+HG L++ E  A+  L ++P +   YV 
Sbjct: 610 RAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQ 669

Query: 544 LSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEM 603
           LS+MYA AG W++VA +R  +  +G++K  GC+ IEV   VH F+V D+ HP    IY  
Sbjct: 670 LSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDRSHPLVGEIYAE 729

Query: 604 LDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKN 663
           L  +   +++ G++P T  VL+D+ E+ KE A+S+HSEKLAIAYG++S   GT IRI KN
Sbjct: 730 LARLMNAIKREGYIPITQNVLHDVGEQQKEEAISYHSEKLAIAYGVLSLPSGTPIRIYKN 789

Query: 664 LRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           LRVC +CHSA+K ISK+  REIIARD +RFHHFKDG CSC DYW
Sbjct: 790 LRVCSDCHSASKFISKVTGREIIARDASRFHHFKDGVCSCGDYW 833



 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 145/494 (29%), Positives = 268/494 (54%), Gaps = 10/494 (2%)

Query: 28  LQNQPSLALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYAL 84
           + ++  + L  +CT +++    KQV   II+ G     + L+ LI++ ++   G+++ A 
Sbjct: 55  IDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSIC--GNVTEAR 112

Query: 85  LVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS 144
            +F+++     V WN +I G++       A   + +M+  G  P+  TF  +L +C+  +
Sbjct: 113 QIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPA 172

Query: 145 AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
            ++ GK++HA V+  G  SD  + T+L++MY + G ++ AR VF+   +RD  ++  ++ 
Sbjct: 173 GLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVG 232

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
           GYA  G  + A +LF  M  ++    PN+ + +++L  C    +L  G  V +     GL
Sbjct: 233 GYAKSGDWEKAFELFYRM--QQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGL 290

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
             ++ V  +LI MY+ CG +  AR +F++++ RDV+SW VMI GY    + ++A  LF  
Sbjct: 291 VDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFAT 350

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           M +  I+P+ +T++ ++ ACA    L+  + IH+ +D       ++ + T+L+ MYAKCG
Sbjct: 351 MQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFG-TDLLVSTALVHMYAKCG 409

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
            IK A QVFD M  + + SW+AMI     +G   +A   F  M    ++PD +T++ +L+
Sbjct: 410 AIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLN 469

Query: 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504
           AC H G LD+G + +   I+   +S  +     ++ +  + G  + A  +  TM ++ D 
Sbjct: 470 ACGHLGALDVGMEIYTQAIKADLVS-HVPLGNALIIMNAKHGSVERARYIFDTM-VRRDV 527

Query: 505 AIWTSLLGACRVHG 518
             W +++G   +HG
Sbjct: 528 ITWNAMIGGYSLHG 541



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 95/295 (32%), Positives = 157/295 (53%), Gaps = 13/295 (4%)

Query: 232 NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLF 291
           +  T V +   C  +    LG  V   I   G   N++  N LI +YS CG++ +AR +F
Sbjct: 56  DSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIF 115

Query: 292 ESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALD 351
           +S+E + V++WN +I GY      KEA  LFRQM+   +EP+ +TFLSVL AC+    L+
Sbjct: 116 DSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLN 175

Query: 352 LGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGL 411
            GK +HA +      +++  + T+L+ MY K G++  A QVFDG+  + ++++N M+ G 
Sbjct: 176 WGKEVHAQV-VTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGY 234

Query: 412 AMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR----QYFNA-MIQDY 466
           A  G  +KA  LF RM   GL+P+ I+F+ +L  C     L  G+    Q  NA ++ D 
Sbjct: 235 AKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDI 294

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
           +++  L      + +    G  + A  +   M+++ D   WT ++     +G +E
Sbjct: 295 RVATSL------IRMYTTCGSIEGARRVFDNMKVR-DVVSWTVMIEGYAENGNIE 342


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  563 bits (1450), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 283/713 (39%), Positives = 419/713 (58%), Gaps = 44/713 (6%)

Query: 34  LALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           L++L  C N   ++  +++H+ +   G+       + LI +   S  G++S A  VF  +
Sbjct: 161 LSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITM--YSKCGEISVACEVFHKM 218

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            E N V W  II+ ++       A + Y +M+ +G  PN  TF  +L SC    A++ G+
Sbjct: 219 TERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGR 278

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           +IH+H+ + GLE+D  V  +LI MY +   ++ AR +F++ S RD +S++A+I GYA  G
Sbjct: 279 RIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSG 338

Query: 211 Y-----LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           Y     +D+  QL + M  R E   PN+ T +++L AC   G+LE G  + + +   G  
Sbjct: 339 YKDKESIDEVFQLLERM--RREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFE 396

Query: 266 SNLHVTNALIDMYSKCG-------------------------------DLVKARDLFESI 294
            +  +  A+ +MY+KCG                               DL  A  +F  +
Sbjct: 397 LDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEM 456

Query: 295 EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGK 354
             R+V+SWN+MI GY    D  +   L   M     +P+ VT +++L AC  L  L+ GK
Sbjct: 457 PTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGK 516

Query: 355 WIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMH 414
            +HA   K   + + V + TSLI MY+KCG +  A  VFD M  +   +WNAM++G   H
Sbjct: 517 LVHAEAVKLGLESDTV-VATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQH 575

Query: 415 GKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQH 474
           G   +A+ LF RM+ E + P++IT   V+SAC+ AGL+  GR+ F  M +D+K++P+ QH
Sbjct: 576 GDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQH 635

Query: 475 YGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534
           YGCMVDLLGRAG   EAE  +++M  +PD ++W +LLGAC+ H  ++L E  A H+LELE
Sbjct: 636 YGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELE 695

Query: 535 PENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVH 594
           P     Y+ LSN+YA AGRWDD   +R  ++D+G+KK  G SSIE+   +H F+  D  H
Sbjct: 696 PSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVAEDCAH 755

Query: 595 PQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKP 654
           P+   I+  L+ +   ++++G+ PD   VL+D+D+  KE AL HHSEKLAIAYGL+ T  
Sbjct: 756 PEIDAIHAELETLTKEMKEAGYTPDMRFVLHDVDDVQKEKALCHHSEKLAIAYGLLKTPS 815

Query: 655 GTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           GT IRI+KNLRVCG+CH+ATK ISKI  REI+ARD NRFH+F +G CSC D+W
Sbjct: 816 GTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFNNGTCSCGDFW 868



 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 168/522 (32%), Positives = 264/522 (50%), Gaps = 53/522 (10%)

Query: 38  SKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVI 97
           +K    ++ K VH Q+ + G+    +  + LI     S F D++ A  VF  +   + V 
Sbjct: 67  AKARRFEDGKMVHKQLDELGVEIDIYLGNSLINF--YSKFEDVASAEQVFRRMTLRDVVT 124

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
           W+++I  ++ ++ P  A   + RM  +   PN  TF  ILK+C   S + +G++IH  V 
Sbjct: 125 WSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVK 184

Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ 217
            +G+E+D  V T+LI MY++ GE+  A  VF+K + R+ VS+TA+I   A    L++A +
Sbjct: 185 AMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFE 244

Query: 218 LFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDM 277
           L+++M   +    PN  T V++L++C    +L  G  + S I   GL +++ V NALI M
Sbjct: 245 LYEQML--QAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITM 302

Query: 278 YSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK------EALMLFRQMLQSNIE 331
           Y KC  + +AR++F+ + KRDVISW+ MI GY   S YK      E   L  +M +  + 
Sbjct: 303 YCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQ-SGYKDKESIDEVFQLLERMRREGVF 361

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN----------------------- 368
           PN VTF+S+L AC   GAL+ G+ IHA + K   +L+                       
Sbjct: 362 PNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQV 421

Query: 369 -------NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421
                  NV  WTS + MY KCG++ +AE+VF  M  + + SWN MI+G A +G   K  
Sbjct: 422 FSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVF 481

Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ-----DYKISPKLQHYG 476
            L S M  EG QPD +T + +L AC     L+ G+      ++     D  ++  L    
Sbjct: 482 ELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSL---- 537

Query: 477 CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
             + +  + G   EA  +   M  + D   W ++L     HG
Sbjct: 538 --IGMYSKCGQVAEARTVFDKMSNR-DTVAWNAMLAGYGQHG 576



 Score =  238 bits (607), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 140/434 (32%), Positives = 234/434 (53%), Gaps = 15/434 (3%)

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
           G + N+ T+  +++ CAK     +GK +H  + +LG+E D ++  SLIN Y++  ++ SA
Sbjct: 51  GLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASA 110

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
             VF + +LRD V+++++I  YA   +   A   F+ M   + N  PN  T +++L AC 
Sbjct: 111 EQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMT--DANIEPNRITFLSILKACN 168

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
           +   LE G  + ++++  G+ +++ V  ALI MYSKCG++  A ++F  + +R+V+SW  
Sbjct: 169 NYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTA 228

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           +I          EA  L+ QMLQ+ I PN VTF+S+L +C    AL+ G+ IH++I +  
Sbjct: 229 IIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERG 288

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADK----- 419
            + + + +  +LI MY KC +++ A ++FD M  + + SW+AMI+G A  G  DK     
Sbjct: 289 LETDMI-VANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDE 347

Query: 420 ALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ-DYKISPKLQHYGCM 478
              L  RM  EG+ P+ +TF+ +L AC   G L+ GRQ    + +  +++   LQ    +
Sbjct: 348 VFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQ--TAI 405

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
            ++  + G   EAE +   M  K +   WTS L      G L   E V     E+   N 
Sbjct: 406 FNMYAKCGSIYEAEQVFSKMANK-NVVAWTSFLSMYIKCGDLSSAEKV---FSEMPTRNV 461

Query: 539 GAYVLLSNMYAGAG 552
            ++ L+   YA  G
Sbjct: 462 VSWNLMIAGYAQNG 475



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 145/540 (26%), Positives = 240/540 (44%), Gaps = 72/540 (13%)

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
           G L +A QL     I++   + N +T   V+  CA     E G  V   ++  G+  +++
Sbjct: 35  GRLREAIQLLG--IIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIY 92

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           + N+LI+ YSK  D+  A  +F  +  RDV++W+ MI  Y   +   +A   F +M  +N
Sbjct: 93  LGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDAN 152

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           IEPN +TFLS+L AC     L+ G+ IH  + K      +V++ T+LI MY+KCG I  A
Sbjct: 153 IEPNRITFLSILKACNNYSILEKGRKIHTIV-KAMGMETDVAVATALITMYSKCGEISVA 211

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
            +VF  M  + + SW A+I   A H K ++A  L+ +M+  G+ P+ +TFV +L++CN  
Sbjct: 212 CEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTP 271

Query: 450 GLLDIGRQYF---------------NAMIQDYKISPKLQHYGCMVDLLGRAGL------- 487
             L+ GR+                 NA+I  Y     +Q    + D + +  +       
Sbjct: 272 EALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMI 331

Query: 488 -------------FDEAEALLKTMEMK---PDAAIWTSLLGACRVHGRLELGESVAKHLL 531
                         DE   LL+ M  +   P+   + S+L AC  HG LE G  +   L 
Sbjct: 332 AGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELS 391

Query: 532 ELEPE-NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK----------KVPGCSSIEV 580
           ++  E +      + NMYA  G   +   + +++ +K +           K    SS E 
Sbjct: 392 KVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAE- 450

Query: 581 GSVVHEFLVGDKV--------HPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD---- 628
             V  E    + V        + Q+  I ++  E+ + ++  GF PD   V+  ++    
Sbjct: 451 -KVFSEMPTRNVVSWNLMIAGYAQNGDIVKVF-ELLSSMKAEGFQPDRVTVITILEACGA 508

Query: 629 -EEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIA 687
               + G L H     A+  GL S     T  ++     CG    A  +  K+ NR+ +A
Sbjct: 509 LAGLERGKLVHAE---AVKLGLESDTVVAT-SLIGMYSKCGQVAEARTVFDKMSNRDTVA 564


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  563 bits (1450), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 288/631 (45%), Positives = 398/631 (63%), Gaps = 4/631 (0%)

Query: 78   GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
            G+   A  +F  ++  + V W+ II     +  P  A+  +  M      PN  T   IL
Sbjct: 378  GETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSIL 437

Query: 138  KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
             +CA +S +  GK IH   +K  ++SD    T+L++MYA+ G   +A   FN+ S RD V
Sbjct: 438  PACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIV 497

Query: 198  SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
            ++ +LI GYA  G   +A  +F ++ +   N  P+  T+V V+ ACA +  L+ G  +  
Sbjct: 498  TWNSLINGYAQIGDPYNAIDMFYKLRLSAIN--PDAGTMVGVVPACALLNDLDQGTCIHG 555

Query: 258  LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYK 316
            LI   G  S+ HV NALIDMY+KCG L  A  LF   +  +D ++WNV+I  Y      K
Sbjct: 556  LIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAK 615

Query: 317  EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
            EA+  F QM   N  PN VTF+SVLPA AYL A   G   HA I +    L+N  +  SL
Sbjct: 616  EAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQ-MGFLSNTLVGNSL 674

Query: 377  IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
            IDMYAKCG +  +E++F+ M +K   SWNAM+SG A+HG  D+A++LFS M    +Q D 
Sbjct: 675  IDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDS 734

Query: 437  ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
            ++FV VLSAC H GL++ GR+ F++M   Y I P L+HY CMVDLLGRAGLFDE    +K
Sbjct: 735  VSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIK 794

Query: 497  TMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
             M ++PDA +W +LLG+CR+H  ++LGE    HL++LEP NP  +V+LS++YA +GRW D
Sbjct: 795  VMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWAD 854

Query: 557  VATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGF 616
                R+++ND G+KK PGCS +E+ + VH F VGDK HPQ + ++ + + +   +EK G+
Sbjct: 855  AGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGY 914

Query: 617  VPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKL 676
            VPD S VL +++EE KE  L  HSE+LAI + L++T PG+TI+IVKNLRVC +CH+ TK 
Sbjct: 915  VPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKF 974

Query: 677  ISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            ISKI  R II RD  RFHHF+DG CSCNDYW
Sbjct: 975  ISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 160/531 (30%), Positives = 270/531 (50%), Gaps = 27/531 (5%)

Query: 17  FPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSP 76
           FP  S   Y    + P L  LS C ++  + Q+H+QII +G  +   +++ LI +   S 
Sbjct: 21  FPSLSSSTYTNYLHYPRL--LSSCKHLNPLLQIHAQIIVSGFKH-HHSITHLINL--YSL 75

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
           F     A  VF++   P++++WN++IR ++ S     A++ Y  M+  G  P+ YTF F+
Sbjct: 76  FHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFV 135

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           LK+C     + EG   H  + + GLE D F+   L++MY++ G+L+ AR VF+K   RD 
Sbjct: 136 LKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDV 195

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           V++ A+I G +      +A   F  M +      P+  +++ +      + ++EL    C
Sbjct: 196 VAWNAMIAGLSQSEDPCEAVDFFRSMQL--VGVEPSSVSLLNLFPGICKLSNIEL----C 249

Query: 257 SLIEGHGLGSNLH--VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
             I G+    +    V+N LID+YSKCGD+  AR +F+ +  +D +SW  M+ GY H   
Sbjct: 250 RSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGC 309

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN-NVSLW 373
           + E L LF +M   N+  N V+ +S   A A    L+ GK IH    +  Q+++ ++ + 
Sbjct: 310 FVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQ--QRIDSDILVA 367

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
           T L+ MYAKCG  + A+Q+F G+  + L +W+A+I+ L   G  ++ALSLF  M  + ++
Sbjct: 368 TPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMK 427

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
           P+ +T + +L AC    LL +G+   +       +   L     +V +  + G F  A  
Sbjct: 428 PNRVTLMSILPACADLSLLKLGKS-IHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALT 486

Query: 494 LLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK----HLLELEPENPGA 540
               M  + D   W SL     ++G  ++G+        + L L   NP A
Sbjct: 487 TFNRMSSR-DIVTWNSL-----INGYAQIGDPYNAIDMFYKLRLSAINPDA 531


>gi|297743485|emb|CBI36352.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 283/702 (40%), Positives = 413/702 (58%), Gaps = 99/702 (14%)

Query: 6   SSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFAL 65
           S+ TLSP   H P         L   P L+L+  C +M  +KQ+HSQ I TGL +     
Sbjct: 3   SATTLSPPPTHLPS--------LPQTPPLSLIKTCKSMAQLKQIHSQTICTGLISNPIVP 54

Query: 66  SKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG 125
           +++I  C     GD+ YA +VF+T+  PN  +WNN+I+G+S    P  A+  Y  M+  G
Sbjct: 55  AQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERG 114

Query: 126 FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR 185
            +P+ YT+PF+LK   + +A+  G+++H H++KLG  S+ FV  +LI++Y+ +GE+  AR
Sbjct: 115 VMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVAR 174

Query: 186 LVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH 245
            VF++SS  D V++  +I+GY      D++ +LFDEM       +P+  T+V+VLSAC+ 
Sbjct: 175 GVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEM--ERMRVLPSSITLVSVLSACSK 232

Query: 246 MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVM 305
           +  L +G  V                                R+ F+ + +RD +SW  M
Sbjct: 233 LKDLNVGKRV-------------------------------HRNYFDKMPERDFVSWTAM 261

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365
           I GY   + +KE L LFR+M  +NI+P++ T +S+L ACA+LGAL+LG+WI AYIDKN  
Sbjct: 262 IDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEI 321

Query: 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
           K+++  +  +LIDMY  CGN++ A ++F+ M ++   SW A+I GLA++G  ++AL +FS
Sbjct: 322 KIDSF-VGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFS 380

Query: 426 RMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485
           +M+   + PD++                         I++  + P               
Sbjct: 381 QMLKASITPDEV-------------------------IKNMPVKP--------------- 400

Query: 486 GLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545
                            ++ +W SLLGACRVH   E+ E  A+ +LELEPEN   YVLL 
Sbjct: 401 -----------------NSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLC 443

Query: 546 NMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLD 605
           N+YA   RW+ +  +R  + D+G+KK PGCS IE+   VHEF+ GD+VHPQSK IY  LD
Sbjct: 444 NIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKEIYSKLD 503

Query: 606 EIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLR 665
           E+   L+ +G+ PDTSEV  D+ EE KE A+  HSEKLAIA+GLIS+ PG TIRIVKNLR
Sbjct: 504 EMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHSEKLAIAFGLISSGPGVTIRIVKNLR 563

Query: 666 VCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +C +CH   KL+SK++NRE+I RDR RFHHF+ G+CSC DYW
Sbjct: 564 MCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHGSCSCKDYW 605


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 279/632 (44%), Positives = 409/632 (64%), Gaps = 8/632 (1%)

Query: 83   ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
            A   ++ + + N   WN++I   +     V A++ +  +   G +P   +FP  +KSC+ 
Sbjct: 1095 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSA 1154

Query: 143  ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
            +  +  G+  H      G E+D FV ++LI+MY++ G+L+ AR +F++  LR+ VS+T++
Sbjct: 1155 LCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSM 1214

Query: 203  ITGYASRGYLDDARQLF-----DEMPIREENFVPNESTV-VTVLSACAHMGSLELGNWVC 256
            ITGY      D+A  LF     +E  + + N VP +S V V+VLSAC+ +    +   V 
Sbjct: 1215 ITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVH 1274

Query: 257  SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
              +   G   ++ V N L+D Y+KCG  + ++ +F+ +E++D ISWN MI  Y  +    
Sbjct: 1275 GFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSG 1334

Query: 317  EALMLFRQMLQS-NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
            EAL +F  M++   +  N VT  +VL ACA+ GAL  GK IH  + K   + N V + TS
Sbjct: 1335 EALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYN-VCVGTS 1393

Query: 376  LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
            +IDMY KCG ++ A++ FD M  K + SW AM++G  MHG+A +AL +F +M+  G++P+
Sbjct: 1394 IIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPN 1453

Query: 436  DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
             ITFV VL+AC+HAGL++ G  +FNAM   Y I P ++HYGCMVDL GRAG  +EA  L+
Sbjct: 1454 YITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLI 1513

Query: 496  KTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555
            K M+MKPD  +W SLLGACR+H  ++LGE  A+ L EL+P+N G YVLLSN+YA AGRW 
Sbjct: 1514 KRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWA 1573

Query: 556  DVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSG 615
            DV  +R  + ++ + K PG S +E+   VH FLVGDK HP  + IY+ L+++   L+K G
Sbjct: 1574 DVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIG 1633

Query: 616  FVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATK 675
            +VP+ + VL+D+DEE KE  L  HSEKLA+A+G++++ PGTTI I+KNLRVCG+CH+  K
Sbjct: 1634 YVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIK 1693

Query: 676  LISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            LISK+ +R+ + RD  RFHHFKDG CSC DYW
Sbjct: 1694 LISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 1725



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 136/388 (35%), Positives = 206/388 (53%), Gaps = 37/388 (9%)

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
           F+L++C     +   +QIHA +++ GL +D  +   LI++Y+ +G +  A L+F +    
Sbjct: 32  FLLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNP 88

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
              ++  +I      G  + A  L+  M    +    ++ T   V+ AC +  S++LG  
Sbjct: 89  CTFTWNLIIRANTINGLSEQALMLYKNMVC--QGIAADKFTFPFVIKACTNFLSIDLGKV 146

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCG-------------------------------D 283
           V   +  +G   ++ V N LID Y KCG                               D
Sbjct: 147 VHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGD 206

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           L +AR +F+ I  ++V+SW  MI GY      +EAL LF++M   NI PN+ T +S++ A
Sbjct: 207 LQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKA 266

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
           C  +G L LG+ IH Y  KN  ++  V L T+LIDMY+KCG+IK A +VF+ M  K+L +
Sbjct: 267 CTEMGILTLGRGIHDYAIKNCIEIG-VYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPT 325

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
           WN+MI+ L +HG   +AL+LFS M    ++PD ITF+GVL AC H   +  G  YF  M 
Sbjct: 326 WNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMT 385

Query: 464 QDYKISPKLQHYGCMVDLLGRAGLFDEA 491
           Q Y I+P  +HY CM +L  R+   DEA
Sbjct: 386 QHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score =  224 bits (572), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 128/407 (31%), Positives = 215/407 (52%), Gaps = 39/407 (9%)

Query: 17  FPPSSDP--PYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAV 74
           FP  + P  P   ++ + +L LL  C N ++++Q+H++II++GL N Q    KLI +   
Sbjct: 12  FPSKNIPLTPRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHL--Y 69

Query: 75  SPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFP 134
           S  G ++YA+L+F  I+ P    WN IIR ++++     A+  Y  M+  G   + +TFP
Sbjct: 70  STHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFP 129

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
           F++K+C    +I  GK +H  ++K G   D FV  +LI+ Y + G    A  VF K  +R
Sbjct: 130 FVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVR 189

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMP-----------------------------IR 225
           + VS+T +I+G  S G L +AR++FDE+P                             ++
Sbjct: 190 NVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQ 249

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
            EN  PNE T+V+++ AC  MG L LG  +      + +   +++  ALIDMYSKCG + 
Sbjct: 250 AENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIK 309

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
            A ++FE++ ++ + +WN MI         +EAL LF +M + N++P+ +TF+ VL AC 
Sbjct: 310 DAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACV 369

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSL---WTSLIDMYAKCGNIKAA 389
           ++  +  G    AY  +  Q      +   +  + ++YA+  N+  A
Sbjct: 370 HIKNVKEG---CAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 145/309 (46%), Gaps = 43/309 (13%)

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
           GL ++  +T  LI +YS  G +  A  LF  I+     +WN++I   T     ++ALML+
Sbjct: 54  GLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLY 113

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK-------------------- 362
           + M+   I  +  TF  V+ AC    ++DLGK +H  + K                    
Sbjct: 114 KNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKC 173

Query: 363 ----------NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLA 412
                        ++ NV  WT++I     CG+++ A ++FD +  K + SW AMI+G  
Sbjct: 174 GHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYI 233

Query: 413 MHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL 472
            + + ++AL LF RM  E + P++ T V ++ AC   G+L +GR      I DY I   +
Sbjct: 234 RNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRG-----IHDYAIKNCI 288

Query: 473 Q---HYG-CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
           +   + G  ++D+  + G   +A  + +TM  K     W S++ +  VHG   LG+    
Sbjct: 289 EIGVYLGTALIDMYSKCGSIKDAIEVFETMPRK-SLPTWNSMITSLGVHG---LGQEALN 344

Query: 529 HLLELEPEN 537
              E+E  N
Sbjct: 345 LFSEMERVN 353



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 147/281 (52%), Gaps = 10/281 (3%)

Query: 34   LALLSKCTNMQN---IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
            +++LS C+ +      + VH  ++K G   +    + L++  A +  G    +  VF+ +
Sbjct: 1255 VSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMD--AYAKCGQPLVSKKVFDWM 1312

Query: 91   REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILS-GFVPNTYTFPFILKSCAKISAISEG 149
             E + + WN++I  ++ S     A++ +  M+   G   N  T   +L +CA   A+  G
Sbjct: 1313 EEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAG 1372

Query: 150  KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
            K IH  V+K+ LE +  V TS+I+MY + G +E A+  F++   ++  S+TA++ GY   
Sbjct: 1373 KCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMH 1432

Query: 210  GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNL 268
            G   +A  +F +M +R     PN  T V+VL+AC+H G +E G +W  ++   + +   +
Sbjct: 1433 GRAKEALDIFYKM-VR-AGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGI 1490

Query: 269  HVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGG 308
                 ++D++ + G L +A +L + ++ K D + W  ++G 
Sbjct: 1491 EHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGA 1531



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 101/223 (45%), Gaps = 13/223 (5%)

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT-SLIDMYAKCGN 385
           + NI      FL  L  C     L   + IHA I ++   L+N  L T  LI +Y+  G 
Sbjct: 22  RGNIRAKKALFL--LQNCKNFKHL---RQIHAKIIRS--GLSNDQLLTRKLIHLYSTHGR 74

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           I  A  +F  +      +WN +I    ++G +++AL L+  M+ +G+  D  TF  V+ A
Sbjct: 75  IAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKA 134

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           C +   +D+G+    ++I+ Y  S  +     ++D   + G    A  + + M ++ +  
Sbjct: 135 CTNFLSIDLGKVVHGSLIK-YGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVR-NVV 192

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548
            WT+++      G L+    +     E+  +N  ++  + N Y
Sbjct: 193 SWTTVISGLISCGDLQEARRI---FDEIPSKNVVSWTAMINGY 232


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 297/677 (43%), Positives = 416/677 (61%), Gaps = 8/677 (1%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           + +L +C   +++   KQVH  IIK+ +      ++ L+ +      G L  A  VF+ +
Sbjct: 32  VEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHV--YIECGRLQEARCVFDAL 89

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            + +   WN +I G+        A++ +  M   G  PN  T+  ILK+CA +SA+  GK
Sbjct: 90  VKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGK 149

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           ++HA +   GLESD  V T+L+ MY + G +  AR +F+     D +S+T +I  YA  G
Sbjct: 150 EVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSG 209

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
              +A +L  +M   +E F PN  T V++L+ACA  G+L+    V       GL  ++ V
Sbjct: 210 NGKEAYRLMLQME--QEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRV 267

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
             AL+ MY+K G +  AR +F+ ++ RDV+SWNVMIG +       EA  LF QM     
Sbjct: 268 GTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGC 327

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           +P+ + FLS+L ACA  GAL+  K IH +   +  +++ V + T+L+ MY+K G+I  A 
Sbjct: 328 KPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVD-VRVGTALVHMYSKSGSIDDAR 386

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
            VFD M  + + SWNAMISGLA HG    AL +F RM   G++PD +TFV VLSAC+HAG
Sbjct: 387 VVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAG 446

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L+D GR  + AM Q Y I P + H  CMVDLLGRAG   EA+  +  M + PD A W +L
Sbjct: 447 LVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGAL 506

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           LG+CR +G +ELGE VAK  L+L+P+N   YVLLSN+YA AG+WD V+ +RT + ++G++
Sbjct: 507 LGSCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIR 566

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           K PG S IEV + +H+FLV D  HP+ K I E  D++   ++  G++PDT  VL + + +
Sbjct: 567 KEPGRSWIEVDNKIHDFLVADSSHPECKEINESKDKVIEKIKAEGYIPDTRLVLKNKNMK 626

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KE  +  HSEKLAI YGL+ T PG  IR+ KNLRVC +CH ATKLISK+  REII RD 
Sbjct: 627 DKELDICSHSEKLAIVYGLMHTPPGNPIRVFKNLRVCTDCHGATKLISKVEGREIIVRDA 686

Query: 691 NRFHHFKDGNCSCNDYW 707
           NRFHHFKDG CSC DYW
Sbjct: 687 NRFHHFKDGVCSCGDYW 703



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 138/410 (33%), Positives = 224/410 (54%), Gaps = 15/410 (3%)

Query: 114 AIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLIN 173
           AI   +  +  G + +++ +  +LK C K   +   KQ+H  ++K  +E +  V  +L++
Sbjct: 12  AIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLH 71

Query: 174 MYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
           +Y + G L+ AR VF+    +   S+ A+I GY    + +DA +LF EM    E   PN 
Sbjct: 72  VYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMC--HEGVQPNA 129

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
            T + +L ACA + +L+ G  V + I   GL S++ V  AL+ MY KCG + +AR +F++
Sbjct: 130 GTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDN 189

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
           +   D+ISW VMIG Y  + + KEA  L  QM Q   +PN +T++S+L ACA  GAL   
Sbjct: 190 LMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWV 249

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAM 413
           K +H +      +L +V + T+L+ MYAK G+I  A  VFD M  + + SWN MI   A 
Sbjct: 250 KRVHRHALDAGLEL-DVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAE 308

Query: 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLD----IGRQYFNAMIQ-DYKI 468
           HG+  +A  LF +M  EG +PD I F+ +L+AC  AG L+    I R   ++ ++ D ++
Sbjct: 309 HGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRV 368

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
              L H      +  ++G  D+A  +   M+++ +   W +++     HG
Sbjct: 369 GTALVH------MYSKSGSIDDARVVFDRMKVR-NVVSWNAMISGLAQHG 411



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 176/351 (50%), Gaps = 14/351 (3%)

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
           +   + +    V VL  C     L     V   I    +  N HV N L+ +Y +CG L 
Sbjct: 21  QRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQ 80

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
           +AR +F+++ K+   SWN MI GY      ++A+ LFR+M    ++PN  T++ +L ACA
Sbjct: 81  EARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACA 140

Query: 346 YLGALDLGKWIHAYIDKNHQKL-NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
            L AL  GK +HA I   H  L ++V + T+L+ MY KCG+I  A ++FD +    + SW
Sbjct: 141 SLSALKWGKEVHACI--RHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISW 198

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLD-IGRQYFNAMI 463
             MI   A  G   +A  L  +M  EG +P+ IT+V +L+AC   G L  + R + +A+ 
Sbjct: 199 TVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHAL- 257

Query: 464 QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELG 523
            D  +   ++    +V +  ++G  D+A  +   M+++ D   W  ++GA   HGR   G
Sbjct: 258 -DAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVR-DVVSWNVMIGAFAEHGR---G 312

Query: 524 ESVAKHLLELEPE--NPGAYVLLS--NMYAGAGRWDDVATIRTRLNDKGMK 570
                  L+++ E   P A + LS  N  A AG  + V  I     D G++
Sbjct: 313 HEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLE 363


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 279/632 (44%), Positives = 409/632 (64%), Gaps = 8/632 (1%)

Query: 83   ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
            A   ++ + + N   WN++I   +     V A++ +  +   G +P   +FP  +KSC+ 
Sbjct: 1968 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSA 2027

Query: 143  ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
            +  +  G+  H      G E+D FV ++LI+MY++ G+L+ AR +F++  LR+ VS+T++
Sbjct: 2028 LCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSM 2087

Query: 203  ITGYASRGYLDDARQLF-----DEMPIREENFVPNESTV-VTVLSACAHMGSLELGNWVC 256
            ITGY      D+A  LF     +E  + + N VP +S V V+VLSAC+ +    +   V 
Sbjct: 2088 ITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVH 2147

Query: 257  SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
              +   G   ++ V N L+D Y+KCG  + ++ +F+ +E++D ISWN MI  Y  +    
Sbjct: 2148 GFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSG 2207

Query: 317  EALMLFRQMLQS-NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
            EAL +F  M++   +  N VT  +VL ACA+ GAL  GK IH  + K   + N V + TS
Sbjct: 2208 EALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYN-VCVGTS 2266

Query: 376  LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
            +IDMY KCG ++ A++ FD M  K + SW AM++G  MHG+A +AL +F +M+  G++P+
Sbjct: 2267 IIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPN 2326

Query: 436  DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
             ITFV VL+AC+HAGL++ G  +FNAM   Y I P ++HYGCMVDL GRAG  +EA  L+
Sbjct: 2327 YITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLI 2386

Query: 496  KTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555
            K M+MKPD  +W SLLGACR+H  ++LGE  A+ L EL+P+N G YVLLSN+YA AGRW 
Sbjct: 2387 KRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWA 2446

Query: 556  DVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSG 615
            DV  +R  + ++ + K PG S +E+   VH FLVGDK HP  + IY+ L+++   L+K G
Sbjct: 2447 DVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIG 2506

Query: 616  FVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATK 675
            +VP+ + VL+D+DEE KE  L  HSEKLA+A+G++++ PGTTI I+KNLRVCG+CH+  K
Sbjct: 2507 YVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIK 2566

Query: 676  LISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            LISK+ +R+ + RD  RFHHFKDG CSC DYW
Sbjct: 2567 LISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 2598



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 136/388 (35%), Positives = 206/388 (53%), Gaps = 37/388 (9%)

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
           F+L++C     +   +QIHA +++ GL +D  +   LI++Y+ +G +  A L+F +    
Sbjct: 32  FLLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNP 88

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
              ++  +I      G  + A  L+  M    +    ++ T   V+ AC +  S++LG  
Sbjct: 89  CTFTWNLIIRANTINGLSEQALMLYKNMVC--QGIAADKFTFPFVIKACTNFLSIDLGKV 146

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCG-------------------------------D 283
           V   +  +G   ++ V N LID Y KCG                               D
Sbjct: 147 VHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGD 206

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           L +AR +F+ I  ++V+SW  MI GY      +EAL LF++M   NI PN+ T +S++ A
Sbjct: 207 LQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKA 266

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
           C  +G L LG+ IH Y  KN  ++  V L T+LIDMY+KCG+IK A +VF+ M  K+L +
Sbjct: 267 CTEMGILTLGRGIHDYAIKNCIEIG-VYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPT 325

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
           WN+MI+ L +HG   +AL+LFS M    ++PD ITF+GVL AC H   +  G  YF  M 
Sbjct: 326 WNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMT 385

Query: 464 QDYKISPKLQHYGCMVDLLGRAGLFDEA 491
           Q Y I+P  +HY CM +L  R+   DEA
Sbjct: 386 QHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 128/407 (31%), Positives = 215/407 (52%), Gaps = 39/407 (9%)

Query: 17  FPPSSDP--PYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAV 74
           FP  + P  P   ++ + +L LL  C N ++++Q+H++II++GL N Q    KLI +   
Sbjct: 12  FPSKNIPLTPRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHL--Y 69

Query: 75  SPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFP 134
           S  G ++YA+L+F  I+ P    WN IIR ++++     A+  Y  M+  G   + +TFP
Sbjct: 70  STHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFP 129

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
           F++K+C    +I  GK +H  ++K G   D FV  +LI+ Y + G    A  VF K  +R
Sbjct: 130 FVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVR 189

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMP-----------------------------IR 225
           + VS+T +I+G  S G L +AR++FDE+P                             ++
Sbjct: 190 NVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQ 249

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
            EN  PNE T+V+++ AC  MG L LG  +      + +   +++  ALIDMYSKCG + 
Sbjct: 250 AENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIK 309

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
            A ++FE++ ++ + +WN MI         +EAL LF +M + N++P+ +TF+ VL AC 
Sbjct: 310 DAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACV 369

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSL---WTSLIDMYAKCGNIKAA 389
           ++  +  G    AY  +  Q      +   +  + ++YA+  N+  A
Sbjct: 370 HIKNVKEG---CAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 145/309 (46%), Gaps = 43/309 (13%)

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
           GL ++  +T  LI +YS  G +  A  LF  I+     +WN++I   T     ++ALML+
Sbjct: 54  GLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLY 113

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK-------------------- 362
           + M+   I  +  TF  V+ AC    ++DLGK +H  + K                    
Sbjct: 114 KNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKC 173

Query: 363 ----------NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLA 412
                        ++ NV  WT++I     CG+++ A ++FD +  K + SW AMI+G  
Sbjct: 174 GHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYI 233

Query: 413 MHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL 472
            + + ++AL LF RM  E + P++ T V ++ AC   G+L +GR      I DY I   +
Sbjct: 234 RNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRG-----IHDYAIKNCI 288

Query: 473 Q---HYG-CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
           +   + G  ++D+  + G   +A  + +TM  K     W S++ +  VHG   LG+    
Sbjct: 289 EIGVYLGTALIDMYSKCGSIKDAIEVFETMPRK-SLPTWNSMITSLGVHG---LGQEALN 344

Query: 529 HLLELEPEN 537
              E+E  N
Sbjct: 345 LFSEMERVN 353



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 145/281 (51%), Gaps = 10/281 (3%)

Query: 34   LALLSKCTNMQN---IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
            +++LS C+ +      + VH  ++K G   +    + L++  A +  G    +  VF+ +
Sbjct: 2128 VSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMD--AYAKCGQPLVSKKVFDWM 2185

Query: 91   REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILS-GFVPNTYTFPFILKSCAKISAISEG 149
             E + + WN++I  ++ S     A++ +  M+   G   N  T   +L +CA   A+  G
Sbjct: 2186 EEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAG 2245

Query: 150  KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
            K IH  V+K+ LE +  V TS+I+MY + G +E A+  F++   ++  S+TA++ GY   
Sbjct: 2246 KCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMH 2305

Query: 210  GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNL 268
            G   +A  +F +M        PN  T V+VL+AC+H G +E G +W  ++   + +   +
Sbjct: 2306 GRAKEALDIFYKMV--RAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGI 2363

Query: 269  HVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGG 308
                 ++D++ + G L +A +L + ++ K D + W  ++G 
Sbjct: 2364 EHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGA 2404



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 101/223 (45%), Gaps = 13/223 (5%)

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT-SLIDMYAKCGN 385
           + NI      FL  L  C     L   + IHA I ++   L+N  L T  LI +Y+  G 
Sbjct: 22  RGNIRAKKALFL--LQNCKNFKHL---RQIHAKIIRS--GLSNDQLLTRKLIHLYSTHGR 74

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           I  A  +F  +      +WN +I    ++G +++AL L+  M+ +G+  D  TF  V+ A
Sbjct: 75  IAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKA 134

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           C +   +D+G+    ++I+ Y  S  +     ++D   + G    A  + + M ++ +  
Sbjct: 135 CTNFLSIDLGKVVHGSLIK-YGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVR-NVV 192

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548
            WT+++      G L+    +     E+  +N  ++  + N Y
Sbjct: 193 SWTTVISGLISCGDLQEARRI---FDEIPSKNVVSWTAMINGY 232


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 286/680 (42%), Positives = 426/680 (62%), Gaps = 14/680 (2%)

Query: 34  LALLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPF---GDLSYALLVF 87
           L +L  C++   +K   + H+Q+IK G     F     I    VS +   G +  A  VF
Sbjct: 166 LIVLDACSSPAGLKLGKEFHAQVIKVG-----FVSDFRIGTALVSMYVKGGSMDGARQVF 220

Query: 88  ETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAIS 147
           + + + +   +N +I G++ S     A + + RM   GF PN  +F  IL  C+   A++
Sbjct: 221 DGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALA 280

Query: 148 EGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA 207
            GK +HA  +  GL  D  V T+LI MY   G +E AR VF+K  +RD VS+T +I GYA
Sbjct: 281 WGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYA 340

Query: 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
               ++DA  LF  M  +EE   P+  T + +++ACA    L L   + S +   G G++
Sbjct: 341 ENSNIEDAFGLFATM--QEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTD 398

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
           L V  AL+ MY+KCG +  AR +F+++ +RDV+SW+ MIG Y      +EA   F  M +
Sbjct: 399 LLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKR 458

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
           +N+EP+ VT++++L AC +LGALDLG  I+    K    ++++ +  +LI+M  K G+I+
Sbjct: 459 NNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKA-DLVSHIPVGNALINMNVKHGSIE 517

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
            A  +F+ M  + + +WN MI G ++HG A +AL LF RM+ E  +P+ +TFVGVLSAC+
Sbjct: 518 RARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACS 577

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
            AG ++ GR++F+ ++    I P ++ YGCMVDLLGRAG  DEAE L+  M +KP+++IW
Sbjct: 578 RAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIW 637

Query: 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
           ++LL ACR++G L++ E  A+  L  EP +   YV LS+MYA AG W++VA +R  +  +
Sbjct: 638 STLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESR 697

Query: 568 GMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
           G++K  GC+ IEV   +H F+V D+ HPQ+  IY  L  +   +++ G++P T  VL+++
Sbjct: 698 GVRKEQGCTWIEVEGKLHTFVVEDRSHPQAGEIYAELARLMTAIKREGYIPVTQNVLHNV 757

Query: 628 DEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIA 687
            E+ KE A+S+HSEKLAIAYG++S   G  IRI KNLRVCG+CHSA+K ISK+  REIIA
Sbjct: 758 GEQEKEEAISYHSEKLAIAYGVLSLPSGAPIRIFKNLRVCGDCHSASKFISKVTGREIIA 817

Query: 688 RDRNRFHHFKDGNCSCNDYW 707
           RD +RFHHFK+G CSC DYW
Sbjct: 818 RDASRFHHFKNGVCSCGDYW 837



 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 150/494 (30%), Positives = 266/494 (53%), Gaps = 10/494 (2%)

Query: 28  LQNQPSLALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYAL 84
           + ++  + L  +C  +++    KQV   II++G     + L+ LI++ ++   G++  A 
Sbjct: 59  IDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSIC--GNMLEAR 116

Query: 85  LVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS 144
             F+++     V WN II G++       A   + +M+     P+  TF  +L +C+  +
Sbjct: 117 QTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPA 176

Query: 145 AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
            +  GK+ HA V+K+G  SD  + T+L++MY + G ++ AR VF+    RD  ++  +I 
Sbjct: 177 GLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIG 236

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
           GYA  G  + A QLF  M  ++E F PN  + +++L  C+   +L  G  V +     GL
Sbjct: 237 GYAKSGDGEKAFQLFYRM--QQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGL 294

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
             ++ V  ALI MY  CG +  AR +F+ ++ RDV+SW VMI GY   S+ ++A  LF  
Sbjct: 295 VDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFAT 354

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           M +  I+P+ +T++ ++ ACA    L L + IH+ + +      ++ + T+L+ MYAKCG
Sbjct: 355 MQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFG-TDLLVDTALVHMYAKCG 413

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
            IK A QVFD M  + + SW+AMI     +G  ++A   F  M    ++PD +T++ +L+
Sbjct: 414 AIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLN 473

Query: 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504
           AC H G LD+G + +   I+   +S  +     ++++  + G  + A  + + M ++ D 
Sbjct: 474 ACGHLGALDLGMEIYTQAIKADLVS-HIPVGNALINMNVKHGSIERARYIFENM-VQRDV 531

Query: 505 AIWTSLLGACRVHG 518
             W  ++G   +HG
Sbjct: 532 VTWNVMIGGYSLHG 545


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  560 bits (1443), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 275/675 (40%), Positives = 432/675 (64%), Gaps = 8/675 (1%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           +L+   T+   ++Q+H++++  GL  + F ++KLI   A S +GD+++A  VF+ +  P 
Sbjct: 26  SLIDSSTHKAQLRQIHARLLVLGLQFSGFLITKLIH--ASSSYGDITFARQVFDDLPRPQ 83

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
              WN IIRG+S ++    A+  Y +M L+   P+++TFP +LK+C  +S +  G+ +HA
Sbjct: 84  VFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHA 143

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL--RDAVSYTALITGYASRGYL 212
            V +LG E+D FV   LI +YA+   L  AR VF    L  R  VS+TA+++ YA  G  
Sbjct: 144 QVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEP 203

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
            +A ++F +M  R+ +  P+   +V+VL+A   +  LE G  + + +   GL +   +  
Sbjct: 204 VEALEIFSQM--RKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLI 261

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           +L  MY+KCG +  A+ LF+ ++  ++I WN MI GY      K+A+ LF +M+  ++ P
Sbjct: 262 SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRP 321

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           + ++  S + ACA +G+L+  +W+  Y+ ++  + ++V + ++LIDM+AKCG+++ A  V
Sbjct: 322 DTISITSAISACAQVGSLEQARWMDEYVSRSDYR-DDVFISSALIDMFAKCGSVECARSV 380

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           FD    + +  W+AMI G  +HG+A +A+SL+  M  +G+ P+D+TF+G+L ACNH+G++
Sbjct: 381 FDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMV 440

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
             G  +FN M  D+KI+P+ QHY C++DLLGRAG  D+A  ++K M ++P   +W +LL 
Sbjct: 441 REGWWFFNRM-ADHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLS 499

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           AC+ H  +ELG+  A+ L  ++P N G YV LSN+YA A  WD VA +R R+ +KG+ K 
Sbjct: 500 ACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKD 559

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
            GCS +EV   +  F VGDK HP+ + I   ++ I++ L++ GFV +    L+D+++E  
Sbjct: 560 VGCSWVEVRGRLEGFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEA 619

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
           E  L  HSE++ IAYGLIST  GTT+RI KNLR C NCH+ATKLISK+  REI+ RD NR
Sbjct: 620 EETLCSHSERITIAYGLISTPQGTTLRITKNLRACVNCHAATKLISKLVGREIVVRDTNR 679

Query: 693 FHHFKDGNCSCNDYW 707
           FHHFKDG CSC DYW
Sbjct: 680 FHHFKDGVCSCGDYW 694


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 289/717 (40%), Positives = 434/717 (60%), Gaps = 38/717 (5%)

Query: 26  KLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF---GDLSY 82
           +L+ +     LL+ C  ++++KQ+H+QI+++ + N+   L KL+  C   P      L Y
Sbjct: 8   RLIPSPSEKGLLASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDY 67

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           AL +F  I  P     N ++R  S   +P   +  Y+ +  +GF  + ++FP +LK+ +K
Sbjct: 68  ALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSK 127

Query: 143 ISAISEGKQIHAHVLKLGL-ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTA 201
           +SA++ G +IH    K G   +DPF+ ++LI MYA  G +  AR +F+K S RD V++  
Sbjct: 128 LSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNI 187

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
           +I GY+   + D   +L++EM  +     P+   + TVLSACAH G+L  G  +   I+ 
Sbjct: 188 MIDGYSQNAHYDHVLKLYEEM--KTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKD 245

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARD-------------------------------L 290
           +G     H+  +L++MY+ CG +  AR+                               +
Sbjct: 246 NGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFI 305

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350
           F+ + ++D++ W+ MI GY  +    EAL LF +M +  I P+ +T LSV+ ACA +GAL
Sbjct: 306 FDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGAL 365

Query: 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISG 410
              KWIH Y DKN      + +  +LIDMYAKCGN+  A +VF+ M  K + SW++MI+ 
Sbjct: 366 VQAKWIHTYADKNGFG-RTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINA 424

Query: 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470
            AMHG AD A++LF RM  + ++P+ +TF+GVL AC+HAGL++ G+++F++MI +++ISP
Sbjct: 425 FAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISP 484

Query: 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHL 530
           + +HYGCMVDL  RA    +A  L++TM   P+  IW SL+ AC+ HG +ELGE  A  L
Sbjct: 485 QREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRL 544

Query: 531 LELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVG 590
           LELEP++ GA V+LSN+YA   RWDDV  +R  +  KG+ K   CS IEV + VH F++ 
Sbjct: 545 LELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMA 604

Query: 591 DKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLI 650
           D+ H QS  IY+ LD + + L+  G+ P TS +L D++EE K+  +  HSEKLA+ YGLI
Sbjct: 605 DRYHKQSDEIYKKLDAVVSQLKLVGYTPSTSGILVDLEEEEKKEVVLWHSEKLALCYGLI 664

Query: 651 STKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
             +  + IRIVKNLR+C +CHS  KL+SK+   EI+ RDR RFHHF  G CSC DYW
Sbjct: 665 GERKESCIRIVKNLRICEDCHSFMKLVSKVHRIEIVMRDRTRFHHFNGGICSCRDYW 721


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  556 bits (1433), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 283/677 (41%), Positives = 419/677 (61%), Gaps = 8/677 (1%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           +++LS C++   +   ++VH ++++ GL N     + LI + A    G +  A  VF+ +
Sbjct: 149 VSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYA--KCGSVRDARRVFDAM 206

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
              ++V W  +   ++ S     ++K Y  M+  G  P+  T+  +L +C  ++A+ +GK
Sbjct: 207 ASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGK 266

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           QIHA +++    SD  V T+L  MY + G ++ AR VF     RD +++  +I G    G
Sbjct: 267 QIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSG 326

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
            L++A  +F  M   +E   P+  T + +LSACA  G L  G  + +     GL S++  
Sbjct: 327 QLEEAHGMFHRML--KECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRF 384

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            NALI+MYSK G +  AR +F+ + KRDV+SW  ++GGY       E+   F++MLQ  +
Sbjct: 385 GNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGV 444

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           E N +T++ VL AC+   AL  GK IHA + K      ++++  +L+ MY KCG+++ A 
Sbjct: 445 EANKITYMCVLKACSNPVALKWGKEIHAEVVKA-GIFADLAVANALMSMYFKCGSVEDAI 503

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           +V +GM  + + +WN +I GLA +G+  +AL  F  M  E ++P+  TFV V+SAC    
Sbjct: 504 RVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRN 563

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L++ GR+ F +M +DY I P  +HY CMVD+L RAG   EAE ++ TM  KP AA+W +L
Sbjct: 564 LVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGAL 623

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           L ACR HG +E+GE  A+  L+LEP+N G YV LS +YA AG W DVA +R  + ++G+K
Sbjct: 624 LAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVK 683

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           K PG S IEV   VH F+ GD+ HP+++ IY  L+ +   ++  G+VPDT  V++D+D+E
Sbjct: 684 KEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQIKSLGYVPDTRFVMHDLDQE 743

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KE A+ HHSEKLAIAYGLIST P T IR+ KNLRVC +CH+ATK ISKI  REIIARD 
Sbjct: 744 GKERAVCHHSEKLAIAYGLISTPPETPIRVSKNLRVCTDCHTATKFISKITGREIIARDA 803

Query: 691 NRFHHFKDGNCSCNDYW 707
           +RFHHFK+G CSC DYW
Sbjct: 804 HRFHHFKNGECSCGDYW 820



 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 162/520 (31%), Positives = 282/520 (54%), Gaps = 13/520 (2%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           + LL  C   +++   KQVH  I++ G+    + ++ L+++      G ++ A  +F+  
Sbjct: 48  VKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKL--YVHCGSVNEARRLFDKF 105

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
              + V WN +I G++       A   +  M   G  P+ +TF  IL +C+  +A++ G+
Sbjct: 106 SNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGR 165

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           ++H  V++ GL ++  V  +LI+MYA+ G +  AR VF+  + RD VS+T L   YA  G
Sbjct: 166 EVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESG 225

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
           Y  ++ + +  M   +E   P+  T + VLSAC  + +LE G  + + I      S++ V
Sbjct: 226 YAQESLKTYHAML--QEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRV 283

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
           + AL  MY KCG +  AR++FE +  RDVI+WN MIGG   +   +EA  +F +ML+  +
Sbjct: 284 STALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECV 343

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
            P+ VT+L++L ACA  G L  GK IHA   K+   +++V    +LI+MY+K G++K A 
Sbjct: 344 APDRVTYLAILSACARPGGLACGKEIHARAVKDGL-VSDVRFGNALINMYSKAGSMKDAR 402

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           QVFD M  + + SW A++ G A  G+  ++ S F +M+ +G++ + IT++ VL AC++  
Sbjct: 403 QVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPV 462

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
            L  G++  +A +    I   L     ++ +  + G  ++A  + + M  + D   W +L
Sbjct: 463 ALKWGKE-IHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTR-DVVTWNTL 520

Query: 511 LGACRVHGR-LELGESVAKHLLELEPENPGAYVLLSNMYA 549
           +G    +GR LE  +     +++ E   P A   ++ M A
Sbjct: 521 IGGLAQNGRGLEALQKF--EVMKSEEMRPNATTFVNVMSA 558



 Score =  256 bits (653), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 135/404 (33%), Positives = 233/404 (57%), Gaps = 5/404 (1%)

Query: 129 NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF 188
           ++Y +  +L+SC K   ++ GKQ+H H+L+ G++ + ++  +L+ +Y   G +  AR +F
Sbjct: 43  DSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLF 102

Query: 189 NKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS 248
           +K S +  VS+  +I+GYA RG   +A  LF  M  ++E   P++ T V++LSAC+   +
Sbjct: 103 DKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLM--QQEGLEPDKFTFVSILSACSSPAA 160

Query: 249 LELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGG 308
           L  G  V   +   GL +N  V NALI MY+KCG +  AR +F+++  RD +SW  + G 
Sbjct: 161 LNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGA 220

Query: 309 YTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN 368
           Y  +   +E+L  +  MLQ  + P+ +T+++VL AC  L AL+ GK IHA I ++    +
Sbjct: 221 YAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHH-S 279

Query: 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMI 428
           +V + T+L  MY KCG +K A +VF+ +  + + +WN MI GL   G+ ++A  +F RM+
Sbjct: 280 DVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRML 339

Query: 429 GEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488
            E + PD +T++ +LSAC   G L  G++     ++D  +S  ++    ++++  +AG  
Sbjct: 340 KECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVS-DVRFGNALINMYSKAGSM 398

Query: 489 DEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
            +A  +   M  K D   WT+L+G     G++    S  K +L+
Sbjct: 399 KDARQVFDRMP-KRDVVSWTALVGGYADCGQVVESFSTFKKMLQ 441


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 298/699 (42%), Positives = 422/699 (60%), Gaps = 39/699 (5%)

Query: 45  NIKQVHSQII--KTGLHNTQFALSKL--IEICAVSPFGDLSYALLVFETIREPNQVIWNN 100
           ++KQ+H+QI+   T   NT   LSKL        S    L YAL VF  I  P+    N 
Sbjct: 31  HLKQIHAQILHSNTTPENTNTLLSKLALSICTLSSSSSSLHYALSVFSQIPNPHTHFSNQ 90

Query: 101 IIRGHSLSSSPVVAIKFYVRM-ILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKL 159
           ++R  S SS P   I  Y  +  ++ F  + ++FP +LK+ +K+SA + G +IH    KL
Sbjct: 91  LLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAFNHGLEIHGLASKL 150

Query: 160 GLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLF 219
           G   DPF+ T LI MYA    +  ARL+F+K    DAV++  +I GY   G+ DDA +LF
Sbjct: 151 GFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLF 210

Query: 220 DEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYS 279
           ++M  R  +  P+   + TVLSAC H G+L  G  +   ++ +G   + H+  ALI+MY+
Sbjct: 211 EDM--RSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYA 268

Query: 280 KCG--DLVK-----------------------------ARDLFESIEKRDVISWNVMIGG 308
            CG  DL +                             AR +F+ + +RD++ W+ MI G
Sbjct: 269 NCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISG 328

Query: 309 YTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN 368
           Y  +   +EAL LF +MLQ    P+ +T LSV+ AC+++GAL    WIH Y+D++     
Sbjct: 329 YAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFG-R 387

Query: 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMI 428
            +S+  +LIDMYAKCGN+  A +VF+ M  K + SW++MI+  AMHG AD A+ LF RM 
Sbjct: 388 ALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMK 447

Query: 429 GEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488
              ++P+ +TF+GVL AC HAGL++ G + F++MI ++ ISP  +HYGCMVDL  RA   
Sbjct: 448 EVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFL 507

Query: 489 DEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548
            +A  L++TM   P+  IW SL+ AC+VHG  ELGE  AK LLELEP++ GA V+LSN+Y
Sbjct: 508 RKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIY 567

Query: 549 AGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEID 608
           A   RW+DV  IR  ++ KG+ K    S IE+ + VH F++ D+ H QS  IYE LDE+ 
Sbjct: 568 AKEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEIYEKLDEVV 627

Query: 609 ALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCG 668
           + L+  G+ P TS +L D++EE K+  +  HSEKLA+ YGLIS +  + IRIVKNLR+C 
Sbjct: 628 SKLKLVGYKPSTSGILIDLEEEDKKELVLWHSEKLAVCYGLISRRNESCIRIVKNLRICE 687

Query: 669 NCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +CHS  KL+SK++  EI+ RDR RFHH   G CSC DYW
Sbjct: 688 DCHSFMKLVSKVYQIEIVVRDRTRFHHCSGGICSCRDYW 726



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 40/224 (17%)

Query: 34  LALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           L+++S C+++  + Q   +H+ + ++G        + LI++ A    G+L  A  VFE +
Sbjct: 358 LSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYA--KCGNLVKAREVFENM 415

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
              N + W+++I   ++  +   AIK + RM      PN  TF  +L +C     + EG+
Sbjct: 416 PRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGE 475

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           ++                +S+IN +  +   E                Y  ++  Y    
Sbjct: 476 KL---------------FSSMINEHGISPTRE---------------HYGCMVDLYCRAN 505

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
           +L  A +L + MP     F PN     +++SAC   G  ELG +
Sbjct: 506 FLRKAIELIETMP-----FAPNVIIWGSLMSACQVHGEAELGEF 544


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 283/664 (42%), Positives = 416/664 (62%), Gaps = 6/664 (0%)

Query: 44  QNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIR 103
           +++ QV+ Q+I +GLH  +F + K I  C    FGD++YA   F  + EP+ ++WN II+
Sbjct: 1   KHLDQVYVQLIVSGLHKCRFLMIKFINACL--HFGDVNYAHKAFREVSEPDILLWNAIIK 58

Query: 104 GHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLES 163
           G++  +     I+ Y+ M +S   PN +TF ++LK+C   S    GKQIH    K G  S
Sbjct: 59  GYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGS 118

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
           + FV  SL++MYA+ G++  AR+VF+K   R  VS+T++I+GY   G   +A  +F EM 
Sbjct: 119 NVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEM- 177

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
            R+ N  P+   +V+V++A  ++  L  G  +  L+   GL     +  +L  MY+K G 
Sbjct: 178 -RQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGL 236

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           +  AR  F  +EK ++I WN MI GY +    +EA+ LFR+M+  NI  + +T  S + A
Sbjct: 237 VEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLA 296

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
            A +G+L+L +W+  YI K+  + ++  + T LIDMYAKCG+I  A  VFD +  K +  
Sbjct: 297 SAQVGSLELARWLDGYISKSEYR-DDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVL 355

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
           W+ MI G  +HG   +A+ L++ M   G+ P+D TF+G+L+AC ++GL+  G + F+ M 
Sbjct: 356 WSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLM- 414

Query: 464 QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELG 523
            D+ I P  QHY C+VDLLGRAG  ++A   + +M +KP  ++W +LL AC++H ++ LG
Sbjct: 415 PDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLG 474

Query: 524 ESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSV 583
           E  A+ L  L+P N G YV LSN+YA A  W  VA +R  +  KG+ K  G SSIE+   
Sbjct: 475 EIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGN 534

Query: 584 VHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKL 643
           +  F VGD+ HP+SK I+E LD ++  L+ +G+VP    VL+D++ E  E  L HHSE+L
Sbjct: 535 LETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERL 594

Query: 644 AIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSC 703
           A+AYG+IST PGTT+RI KNLR C NCHSA KLISK+ +REII RD  RFHHFKDG CSC
Sbjct: 595 AVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSC 654

Query: 704 NDYW 707
            D+W
Sbjct: 655 GDFW 658


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 283/665 (42%), Positives = 417/665 (62%), Gaps = 6/665 (0%)

Query: 43  MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNII 102
           ++++ QV+ Q+I +GLH  +F + K I  C    FGD++YA   F  + EP+ ++WN II
Sbjct: 15  LKHLDQVYVQLIVSGLHKCRFLMIKFINACL--HFGDVNYAHKAFREVSEPDILLWNAII 72

Query: 103 RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE 162
           +G++  +     I+ Y+ M +S   PN +TF ++LK+C   S    GKQIH    K G  
Sbjct: 73  KGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFG 132

Query: 163 SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
           S+ FV  SL++MYA+ G++  AR+VF+K   R  VS+T++I+GY   G   +A  +F EM
Sbjct: 133 SNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEM 192

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
             R+ N  P+   +V+V++A  ++  L  G  +  L+   GL     +  +L  MY+K G
Sbjct: 193 --RQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRG 250

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
            +  AR  F  +EK ++I WN MI GY +    +EA+ LFR+M+  NI  + +T  S + 
Sbjct: 251 LVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVL 310

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           A A +G+L+L +W+  YI K+  + ++  + T LIDMYAKCG+I  A  VFD +  K + 
Sbjct: 311 ASAQVGSLELARWLDGYISKSEYR-DDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVV 369

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
            W+ MI G  +HG   +A+ L++ M   G+ P+D TF+G+L+AC ++GL+  G + F+ M
Sbjct: 370 LWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLM 429

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
             D+ I P  QHY C+VDLLGRAG  ++A   + +M +KP  ++W +LL AC++H ++ L
Sbjct: 430 -PDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRL 488

Query: 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582
           GE  A+ L  L+P N G YV LSN+YA A  W  VA +R  +  KG+ K  G SSIE+  
Sbjct: 489 GEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEING 548

Query: 583 VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEK 642
            +  F VGD+ HP+SK I+E LD ++  L+ +G+VP    VL+D++ E  E  L HHSE+
Sbjct: 549 NLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSER 608

Query: 643 LAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCS 702
           LA+AYG+IST PGTT+RI KNLR C NCHSA KLISK+ +REII RD  RFHHFKDG CS
Sbjct: 609 LAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCS 668

Query: 703 CNDYW 707
           C D+W
Sbjct: 669 CGDFW 673


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 275/675 (40%), Positives = 432/675 (64%), Gaps = 8/675 (1%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           +L+   T+   +KQ+H++++  GL  + F ++KLI   A S FGD+++A  VF+ +  P 
Sbjct: 26  SLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIH--ASSSFGDITFARQVFDDLPRPQ 83

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
              WN IIRG+S ++    A+  Y  M L+   P+++TFP +LK+C+ +S +  G+ +HA
Sbjct: 84  IFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHA 143

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL--RDAVSYTALITGYASRGYL 212
            V +LG ++D FV   LI +YA+   L SAR VF    L  R  VS+TA+++ YA  G  
Sbjct: 144 QVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEP 203

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
            +A ++F +M  R+ +  P+   +V+VL+A   +  L+ G  + + +   GL     +  
Sbjct: 204 MEALEIFSQM--RKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLI 261

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           +L  MY+KCG +  A+ LF+ ++  ++I WN MI GY      +EA+ +F +M+  ++ P
Sbjct: 262 SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRP 321

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           + ++  S + ACA +G+L+  + ++ Y+ ++  + ++V + ++LIDM+AKCG+++ A  V
Sbjct: 322 DTISITSAISACAQVGSLEQARSMYEYVGRSDYR-DDVFISSALIDMFAKCGSVEGARLV 380

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           FD    + +  W+AMI G  +HG+A +A+SL+  M   G+ P+D+TF+G+L ACNH+G++
Sbjct: 381 FDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMV 440

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
             G  +FN M  D+KI+P+ QHY C++DLLGRAG  D+A  ++K M ++P   +W +LL 
Sbjct: 441 REGWWFFNRM-ADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLS 499

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           AC+ H  +ELGE  A+ L  ++P N G YV LSN+YA A  WD VA +R R+ +KG+ K 
Sbjct: 500 ACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKD 559

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
            GCS +EV   +  F VGDK HP+ + I   ++ I++ L++ GFV +    L+D+++E  
Sbjct: 560 VGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEA 619

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
           E  L  HSE++AIAYGLIST  GT +RI KNLR C NCH+ATKLISK+ +REI+ RD NR
Sbjct: 620 EETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNR 679

Query: 693 FHHFKDGNCSCNDYW 707
           FHHFKDG CSC DYW
Sbjct: 680 FHHFKDGVCSCGDYW 694


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 288/695 (41%), Positives = 419/695 (60%), Gaps = 11/695 (1%)

Query: 13  SILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEIC 72
           SI+  P S+       + Q    L+S  +   ++KQVH  +I   LH+  F ++ L++  
Sbjct: 2   SIVTVPSSTS------KVQQIKTLISVASTFNHLKQVHVSLIHHHLHHDTFLVNLLLKRT 55

Query: 73  AVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYT 132
               F    Y+ L+F   + PN  ++N +I G   +      +  ++ +   G   + +T
Sbjct: 56  LF--FRQTHYSFLLFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFT 113

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           FP +LK+C + S    G  +H+ V+K G   D    TSL+++Y+ +G L  A  VF +  
Sbjct: 114 FPLVLKACTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIP 173

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
            R  V++TAL +GY + G   +A  LF +M   E    P+   +V VLSAC H+G L+ G
Sbjct: 174 ERSVVTWTALFSGYTTAGKHREAIDLFKKMV--EMGVRPDSYFIVQVLSACVHVGDLDSG 231

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
            W+   +E   +  N  V   L+++Y+KCG + KAR +F+S+ ++D+++W+ MI GY   
Sbjct: 232 EWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASN 291

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
           S  KE +  F QMLQ N++P+  + +  L +CA LGALDLG+W  + ID+ H+ L N+ +
Sbjct: 292 SFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDR-HEFLTNLFM 350

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
             +LIDMYAKCG +    +VF  M  K +   NA ISGLA +G    + ++F +    G+
Sbjct: 351 ANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGI 410

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
            PD  TF+G+L  C HAGL+  G ++FNA+   Y +   ++HYGCMVDL GRAG+ D+A 
Sbjct: 411 SPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAY 470

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552
            L+  M M+P+A +W +LL  CR+    +L E+V K L+ LEP N G YV LSN+Y+ +G
Sbjct: 471 RLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVSG 530

Query: 553 RWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE 612
           RWD+ A +R  +N KGMKK+PG S IE+   VHEFL  DK HP S  IY  L+++   + 
Sbjct: 531 RWDEAAEVRDMMNRKGMKKIPGYSWIELEGTVHEFLADDKSHPLSDKIYAKLEDLGNEMR 590

Query: 613 KSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHS 672
             GFVP T  V +D+++E KE  L HHSEKLA+A+GLIST  G  IR+VKNLRVCG+CH 
Sbjct: 591 LMGFVPTTEFVFFDVEDEEKERVLGHHSEKLAVAFGLISTDHGQVIRVVKNLRVCGDCHE 650

Query: 673 ATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
             KLISKI  REI+ RD NRFH F +G+CSCNDYW
Sbjct: 651 VMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 277/673 (41%), Positives = 420/673 (62%), Gaps = 6/673 (0%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           +L+    +  ++ Q++++++ TGL    F ++KL+     S  G++S A  +F+   +P+
Sbjct: 80  SLIDDSIHKTHLNQIYAKLLVTGLQYGGFLIAKLVN--KASNIGEVSCARKLFDKFPDPD 137

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
             +WN I+R +S       AI+ Y RM ++   P+ ++FP +LK+C+ + A+  G+++H 
Sbjct: 138 VFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHG 197

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
            + + G ESD FV   L+ +YA+ GE+  A  VF +   R  VS+T++I+GYA  G   +
Sbjct: 198 QIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIE 257

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274
           A ++F EM  R+ N  P+   +V+VL A   +  LE G  +   +   GL     +  +L
Sbjct: 258 ALRIFSEM--RKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISL 315

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
             +Y+KCG ++ AR  F  +E   +I WN MI GY      +EA+ LFR M   NI P+ 
Sbjct: 316 TSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDS 375

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           +T  S + ACA +G+L+L +W+  YI  +  + N+V + TSLID YAKCG++  A  VFD
Sbjct: 376 ITVTSSIAACAQIGSLELARWMDEYISMSEFR-NDVIVNTSLIDTYAKCGSVDMARFVFD 434

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
            +  K +  W+AM+ G  +HG+  +++ LF  M   G+ P+D+TFVG+L+AC ++GL++ 
Sbjct: 435 RIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEE 494

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
           G   F+ M +DY I P+ QHY C+VDLLGRAG  D A   +  M ++P  ++W +LL AC
Sbjct: 495 GWDLFHRM-RDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSAC 553

Query: 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPG 574
           ++H  + LGE  A+ L  L+P N G YV LSN+YA +  WD VA +R  + +KG+ K  G
Sbjct: 554 KIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLG 613

Query: 575 CSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEG 634
            S IE+   +  F  GDK HP+SK I+E +++++  L+++GFVP T  VL+D++ E  E 
Sbjct: 614 YSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKEAGFVPHTESVLHDLNYEETEE 673

Query: 635 ALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFH 694
            L +HSE+LAIAYGLIST PGTT+RI KNLR C NCH+A KLISK+ +REI+ RD  RFH
Sbjct: 674 TLCNHSERLAIAYGLISTPPGTTLRITKNLRACDNCHAAIKLISKLVSREIVVRDACRFH 733

Query: 695 HFKDGNCSCNDYW 707
           HFKDG CSC DYW
Sbjct: 734 HFKDGACSCGDYW 746


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  553 bits (1425), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 275/675 (40%), Positives = 431/675 (63%), Gaps = 8/675 (1%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           +L+   T+   +KQ+H++++  GL  + F ++KLI   A S FGD+++A  VF+ +  P 
Sbjct: 26  SLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIH--ASSSFGDITFARQVFDDLPRPQ 83

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
              WN IIRG+S ++    A+  Y  M L+   P+++TFP +LK+C+ +S +  G+ +HA
Sbjct: 84  IFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHA 143

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL--RDAVSYTALITGYASRGYL 212
            V +LG ++D FV   LI +YA+   L SAR VF    L  R  VS+TA+++ YA  G  
Sbjct: 144 QVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEP 203

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
            +A ++F  M  R+ +  P+   +V+VL+A   +  L+ G  + + +   GL     +  
Sbjct: 204 MEALEIFSHM--RKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLI 261

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           +L  MY+KCG +  A+ LF+ ++  ++I WN MI GY      +EA+ +F +M+  ++ P
Sbjct: 262 SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRP 321

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           + ++  S + ACA +G+L+  + ++ Y+ ++  + ++V + ++LIDM+AKCG+++ A  V
Sbjct: 322 DTISITSAISACAQVGSLEQARSMYEYVGRSDYR-DDVFISSALIDMFAKCGSVEGARLV 380

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           FD    + +  W+AMI G  +HG+A +A+SL+  M   G+ P+D+TF+G+L ACNH+G++
Sbjct: 381 FDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMV 440

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
             G  +FN M  D+KI+P+ QHY C++DLLGRAG  D+A  ++K M ++P   +W +LL 
Sbjct: 441 REGWWFFNLM-ADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLS 499

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           AC+ H  +ELGE  A+ L  ++P N G YV LSN+YA A  WD VA +R R+ +KG+ K 
Sbjct: 500 ACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKD 559

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
            GCS +EV   +  F VGDK HP+ + I   ++ I++ L++ GFV +    L+D+++E  
Sbjct: 560 VGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEA 619

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
           E  L  HSE++AIAYGLIST  GT +RI KNLR C NCH+ATKLISK+ +REI+ RD NR
Sbjct: 620 EETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNR 679

Query: 693 FHHFKDGNCSCNDYW 707
           FHHFKDG CSC DYW
Sbjct: 680 FHHFKDGVCSCGDYW 694


>gi|347954532|gb|AEP33766.1| organelle transcript processing 82, partial [Lepidium virginicum]
          Length = 464

 Score =  553 bits (1424), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 271/464 (58%), Positives = 341/464 (73%), Gaps = 31/464 (6%)

Query: 59  HNTQFALSKLIEICAVSP-FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKF 117
           HNT +ALS+L+E C +SP F  L YA+ VFETI EPN +IWN + RGH+L+S  V A+K 
Sbjct: 1   HNTNYALSQLLEFCVLSPHFDGLPYAISVFETIEEPNLLIWNTMFRGHALNSDSVSALKL 60

Query: 118 YVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ 177
           YV MI  G +PN+Y+FPF+LKSCAK  A  EG+QIH HV+KLG + D +VHTSLI+MYAQ
Sbjct: 61  YVCMISLGLLPNSYSFPFLLKSCAKSKAFREGQQIHGHVVKLGYDLDMYVHTSLISMYAQ 120

Query: 178 NGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE----------- 226
           NG LE A  VF++SS R  VSYTALITGYASRGY   AR+LFDE+ +++           
Sbjct: 121 NGRLEDAHKVFDRSSHRHVVSYTALITGYASRGYTKSARKLFDEILVKDIVSWNAMISGY 180

Query: 227 ------------------ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
                              N  P+EST+VTV+SACA   ++ELG  V SLIE HG GSNL
Sbjct: 181 VETFNYKEALELYKEMVKTNVKPDESTMVTVVSACAQSSNIELGRQVHSLIEDHGFGSNL 240

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
            V NAL+DMYSKCG++  A  LF+ +  +D ISWN +IGG+TH + YKEAL LF++ML+S
Sbjct: 241 KVVNALMDMYSKCGEMETACRLFQGLVNKDAISWNTLIGGHTHMNLYKEALFLFQEMLRS 300

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL-NNVSLWTSLIDMYAKCGNIK 387
              PNDVT LSVL ACA+LGA+D+G+WIH YIDK  + + N+ SL TSLIDMYAKCG+I+
Sbjct: 301 GESPNDVTMLSVLSACAHLGAIDIGRWIHVYIDKRLKGVTNSSSLRTSLIDMYAKCGDIE 360

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
           AA QVFD M  ++L+SWNAMI G AMHGKA+ A  LFS+M   G++PDDITFVG+LSAC+
Sbjct: 361 AASQVFDSMLARSLSSWNAMIFGFAMHGKANAAFDLFSKMRKSGIEPDDITFVGLLSACS 420

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
           H+G+LD+GR  F++M QDYKI+PKL+HYGCM+DLLG+  LF EA
Sbjct: 421 HSGMLDLGRHIFSSMTQDYKITPKLEHYGCMIDLLGQCALFKEA 464



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 112/240 (46%), Gaps = 38/240 (15%)

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A  +FE+IE+ +++ WN M  G+   SD   AL L+  M+   + PN  +F  +L +CA 
Sbjct: 26  AISVFETIEEPNLLIWNTMFRGHALNSDSVSALKLYVCMISLGLLPNSYSFPFLLKSCAK 85

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
             A   G+ IH ++ K    L+ + + TSLI MYA+ G ++ A +VFD   ++ + S+ A
Sbjct: 86  SKAFREGQQIHGHVVKLGYDLD-MYVHTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTA 144

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
           +I+G A  G    A  LF          D+I    ++S              +NAMI  Y
Sbjct: 145 LITGYASRGYTKSARKLF----------DEILVKDIVS--------------WNAMISGY 180

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
                       V+        +  + ++KT  +KPD +   +++ AC     +ELG  V
Sbjct: 181 ------------VETFNYKEALELYKEMVKT-NVKPDESTMVTVVSACAQSSNIELGRQV 227


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 292/711 (41%), Positives = 426/711 (59%), Gaps = 42/711 (5%)

Query: 27  LLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLV 86
           LLQN  S+   S+       KQ+H+QI++T L +    LS ++ I   S    L  +LL+
Sbjct: 11  LLQNPSSVKSKSQA------KQLHAQILRTSLPSPSL-LSTILSI--YSNLNLLHDSLLI 61

Query: 87  FETI-REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145
           F ++   P  + W +IIR ++     + ++ F+++M+ SG  P+   FP +LKSC  +  
Sbjct: 62  FNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKD 121

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELE----------------------- 182
           +  G+ +H  +++LG+  D +   +L+NMY++   LE                       
Sbjct: 122 LRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEK 181

Query: 183 ------SARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTV 236
                 S R VF     RD VS+  +I+G A  G  +DA  +  EM     +  P+  T+
Sbjct: 182 ESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMG--NADLRPDSFTL 239

Query: 237 VTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK 296
            +VL   A   +L  G  +      +G  +++ + ++LIDMY+KC  +  +  +F  + +
Sbjct: 240 SSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQ 299

Query: 297 RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
            D ISWN +I G      + E L  F+QML + I+PN V+F S++PACA+L  L LGK +
Sbjct: 300 HDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQL 359

Query: 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGK 416
           H YI ++     NV + ++L+DMYAKCGNI+ A  +FD M    + SW AMI G A+HG 
Sbjct: 360 HGYIIRSRFD-GNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGH 418

Query: 417 ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG 476
           A  A+SLF RM  EG++P+ + F+ VL+AC+HAGL+D   +YFN+M QDY+I P L+HY 
Sbjct: 419 AYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYA 478

Query: 477 CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536
            + DLLGR G  +EA   +  M ++P  ++W++LL ACRVH  +EL E V+K L  ++P+
Sbjct: 479 AVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQ 538

Query: 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQ 596
           N GAYVLLSN+Y+ AGRW D   +R  + DKGMKK P CS IE+ + VH F+ GDK HP 
Sbjct: 539 NIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPY 598

Query: 597 SKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGT 656
              I E L  +   +E+ G+V DT+EVL+D++EE K   L  HSE+LAI +G+IST  GT
Sbjct: 599 YDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGT 658

Query: 657 TIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           TIR+ KNLRVC +CH+ATK ISKI  REI+ RD +RFHHFKDG CSC D+W
Sbjct: 659 TIRVTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 709


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 283/677 (41%), Positives = 414/677 (61%), Gaps = 5/677 (0%)

Query: 31  QPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           Q    L+S    + ++KQ+H  +I   LH+  F ++ L++      F    Y+ L+F   
Sbjct: 14  QQIKTLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLF--FRQTKYSYLLFSHT 71

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
           + PN  ++N++I G   +      +  ++ +   G   + +TFP +LK+C + S+   G 
Sbjct: 72  QFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGI 131

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            +H+ V+K G   D    TSL+++Y+ +G L  A  +F++   R  V++TAL +GY + G
Sbjct: 132 DLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSG 191

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
              +A  LF +M   E    P+   +V VLSAC H+G L+ G W+   +E   +  N  V
Sbjct: 192 RHREAIDLFKKMV--EMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFV 249

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
              L+++Y+KCG + KAR +F+S+ ++D+++W+ MI GY   S  KE + LF QMLQ N+
Sbjct: 250 RTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENL 309

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           +P+  + +  L +CA LGALDLG+W  + ID+ H+ L N+ +  +LIDMYAKCG +    
Sbjct: 310 KPDQFSIVGFLSSCASLGALDLGEWGISLIDR-HEFLTNLFMANALIDMYAKCGAMARGF 368

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           +VF  M  K +   NA ISGLA +G    + ++F +    G+ PD  TF+G+L  C HAG
Sbjct: 369 EVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAG 428

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L+  G ++FNA+   Y +   ++HYGCMVDL GRAG+ D+A  L+  M M+P+A +W +L
Sbjct: 429 LIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGAL 488

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           L  CR+    +L E+V K L+ LEP N G YV LSN+Y+  GRWD+ A +R  +N KGMK
Sbjct: 489 LSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMK 548

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           K+PG S IE+   VHEFL  DK HP S  IY  L+++   +   GFVP T  V +D++EE
Sbjct: 549 KIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEE 608

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KE  L +HSEKLA+A GLIST  G  IR+VKNLRVCG+CH   KLISKI  REI+ RD 
Sbjct: 609 EKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDN 668

Query: 691 NRFHHFKDGNCSCNDYW 707
           NRFH F +G+CSCNDYW
Sbjct: 669 NRFHCFTNGSCSCNDYW 685


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 280/706 (39%), Positives = 434/706 (61%), Gaps = 39/706 (5%)

Query: 36  LLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LLS C+ +  +    QVH  ++K GL    F  + LI   A     DL   L  F+ + E
Sbjct: 136 LLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKL--FDGMLE 193

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            N V W ++I G+S       A+  + +M  +G  PN  T   ++ +CAK+  +  GK++
Sbjct: 194 RNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKV 253

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
            +++ +LG+E    +  +L++MY + G++ +AR +F++ + ++ V Y  +++ Y    + 
Sbjct: 254 CSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWA 313

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
            D   + DEM   ++   P++ T+++ ++ACA +G L +G    + +  +GL    +++N
Sbjct: 314 SDVLVILDEM--LQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISN 371

Query: 273 ALIDMYSKCG-------------------------------DLVKARDLFESIEKRDVIS 301
           A+IDMY KCG                               D+  A  +F+ + +RD++S
Sbjct: 372 AIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVS 431

Query: 302 WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361
           WN MIG     S ++EA+ LFR+M    I  + VT + +  AC YLGALDL KW+  YI+
Sbjct: 432 WNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIE 491

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421
           KN   ++ + L T+L+DM+++CG+  +A  VF  M  + +++W A I  +AM G  + A+
Sbjct: 492 KNDIHVD-LQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAI 550

Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481
            LF+ M+ + ++PDD+ FV +L+AC+H G +D GRQ F +M + + I P + HYGCMVDL
Sbjct: 551 ELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDL 610

Query: 482 LGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541
           LGRAGL +EA  L+++M ++P+  +W SLL ACR H  +EL    A+ L +L PE  G +
Sbjct: 611 LGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIH 670

Query: 542 VLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIY 601
           VLLSN+YA AG+W DVA +R ++ +KG++KVPG SSIEV  ++HEF  GD+ H ++ HI 
Sbjct: 671 VLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIG 730

Query: 602 EMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIV 661
            ML+EI+  L ++G+VPDT+ VL D+DE+ KE  LS HSEKLA+AYGLI+T  G  IR+V
Sbjct: 731 LMLEEINCRLSEAGYVPDTTNVLLDVDEQEKEHLLSRHSEKLAMAYGLITTGQGIPIRVV 790

Query: 662 KNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           KNLR+C +CHS  KL+SK++NREI  RD NR+H FK+G CSC DYW
Sbjct: 791 KNLRMCSDCHSFAKLVSKLYNREITVRDNNRYHFFKEGFCSCRDYW 836



 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 199/576 (34%), Positives = 305/576 (52%), Gaps = 45/576 (7%)

Query: 9   TLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGL--HNTQFALS 66
           TL PS     P+S      +    S  LL  C  ++ +KQ+H  ++K GL  H     L+
Sbjct: 4   TLFPSSTLLVPASLKEANPITRNSSSKLLVNCKTLKELKQLHCDMMKKGLLCHKPASNLN 63

Query: 67  KLI-EICAVSPFGDLSYALLVF--ETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMIL 123
           KLI     +     L YA   F  +     +  ++N +IRG++ +     AI  YV+M++
Sbjct: 64  KLIASSVQIGTLESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLV 123

Query: 124 SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELES 183
            G VP+ YTFPF+L +C+KI A+SEG Q+H  VLK+GLE D FV  SLI+ YA+ G+++ 
Sbjct: 124 MGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDL 183

Query: 184 ARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC 243
            R +F+    R+ VS+T+LI GY+ R    +A  LF +M   E    PN  T+V V+SAC
Sbjct: 184 GRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMG--EAGVEPNPVTMVCVISAC 241

Query: 244 AHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN 303
           A +  LELG  VCS I   G+  +  + NAL+DMY KCGD+  AR +F+    ++++ +N
Sbjct: 242 AKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYN 301

Query: 304 VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363
            ++  Y H     + L++  +MLQ    P+ VT LS + ACA LG L +GK  HAY+ +N
Sbjct: 302 TIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRN 361

Query: 364 H-QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA----- 417
             +  +N+S   ++IDMY KCG  +AA +VF+ M  KT+ +WN++I+GL   G       
Sbjct: 362 GLEGWDNIS--NAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWR 419

Query: 418 --------------------------DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
                                     ++A+ LF  M  +G+  D +T VG+ SAC + G 
Sbjct: 420 IFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGA 479

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           LD+ + +    I+   I   LQ    +VD+  R G    A  + K ME K D + WT+ +
Sbjct: 480 LDLAK-WVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRME-KRDVSAWTAAI 537

Query: 512 GACRVHGRLELGESVAKHLLE--LEPENPGAYVLLS 545
           G   + G  E    +   +LE  ++P++     LL+
Sbjct: 538 GVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLT 573


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 277/625 (44%), Positives = 399/625 (63%), Gaps = 8/625 (1%)

Query: 90  IREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG 149
           + + N   WN++I   + S   V A++ +  M      PN  TFP  +KSC+ +  +  G
Sbjct: 112 VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSG 171

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           +Q H   L  G E D FV ++L++MY++ GEL  AR +F++ S R+ VS+T++ITGY   
Sbjct: 172 RQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQN 231

Query: 210 GYLDDARQLFDEMPIREE------NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG 263
                A  LF E  + E           +   +V+VLSAC+ +    +   V   +   G
Sbjct: 232 DDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRG 291

Query: 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFR 323
              +L V N L+D Y+KCG+L  +R +F+ + +RDVISWN +I  Y       E++ +F 
Sbjct: 292 FEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFH 351

Query: 324 QMLQ-SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
           +M++   I  N VT  +VL ACA+ G+  LGK IH  + K   + +NV + TS+IDMY K
Sbjct: 352 RMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLE-SNVFVGTSIIDMYCK 410

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
           CG ++ A + FD M  K + SW+AM++G  MHG A +AL +F  M   G++P+ ITFV V
Sbjct: 411 CGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSV 470

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
           L+AC+HAGLL+ G  +F AM  ++ + P ++HYGCMVDLLGRAG   EA  L+K M+++P
Sbjct: 471 LAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRP 530

Query: 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562
           D  +W +LLGACR+H  ++LGE  A+ L EL+P+N G YVLLSN+YA AGRW+DV  +R 
Sbjct: 531 DFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRI 590

Query: 563 RLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSE 622
            + + G+ K PG S +++   VH FLVGD+ HPQ + IYE L+++   L++ G+VPD + 
Sbjct: 591 LMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTS 650

Query: 623 VLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFN 682
           VL+D+  E KE  L  HSEKLA+A+G+++T PGTTI I+KNLRVCG+CH+A K ISKI +
Sbjct: 651 VLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVD 710

Query: 683 REIIARDRNRFHHFKDGNCSCNDYW 707
           REI+ RD  RFHHF+DG CSC DYW
Sbjct: 711 REIVVRDSKRFHHFRDGLCSCGDYW 735



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 121/421 (28%), Positives = 206/421 (48%), Gaps = 27/421 (6%)

Query: 8   LTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSK 67
           L+L P+   FP +      LL             ++ + +Q H Q +  G     F  S 
Sbjct: 146 LSLKPNRSTFPCAIKSCSALL-------------DLHSGRQAHQQALIFGFEPDLFVSSA 192

Query: 68  LIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMIL--SG 125
           L+++   S  G+L  A  +F+ I   N V W ++I G+  +     A+  +   ++  SG
Sbjct: 193 LVDM--YSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESG 250

Query: 126 ------FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNG 179
                    +      +L +C+++S  S  + +H  ++K G E D  V  +L++ YA+ G
Sbjct: 251 SEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCG 310

Query: 180 ELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTV 239
           EL  +R VF+  + RD +S+ ++I  YA  G   ++ ++F  M +++     N  T+  V
Sbjct: 311 ELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRM-VKDGEINYNAVTLSAV 369

Query: 240 LSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV 299
           L ACAH GS  LG  +   +   GL SN+ V  ++IDMY KCG +  AR  F+ + +++V
Sbjct: 370 LLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNV 429

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG-KWIHA 358
            SW+ M+ GY      KEAL +F +M  + ++PN +TF+SVL AC++ G L+ G  W  A
Sbjct: 430 KSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKA 489

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKA 417
            +         V  +  ++D+  + G +K A  +  GM  +     W A++    MH   
Sbjct: 490 -MSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNV 548

Query: 418 D 418
           D
Sbjct: 549 D 549



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 8/183 (4%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K +H Q+IK GL +  F  + +I++      G +  A   F+ +RE N   W+ ++ G+ 
Sbjct: 383 KCIHDQVIKMGLESNVFVGTSIIDM--YCKCGKVEMARKAFDRMREKNVKSWSAMVAGYG 440

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ-IHAHVLKLGLESDP 165
           +      A++ +  M ++G  PN  TF  +L +C+    + EG     A   +  +E   
Sbjct: 441 MHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGV 500

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLR-DAVSYTALITGYASRGYLD----DARQLFD 220
             +  ++++  + G L+ A  +     LR D V + AL+        +D     AR+LF+
Sbjct: 501 EHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFE 560

Query: 221 EMP 223
             P
Sbjct: 561 LDP 563


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 297/704 (42%), Positives = 436/704 (61%), Gaps = 30/704 (4%)

Query: 10  LSPSILH-----FPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFA 64
           LSP++ H      PP+   P   LQN         C   +   Q+H+  IKT   N    
Sbjct: 2   LSPTLSHSLQPFLPPNLHFP---LQN---------CGTEREANQLHALSIKTASLNHPSV 49

Query: 65  LSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILS 124
            S+L+ + A     +L YA  +F+ I+EP  V WN +I+ +  +     AI  + ++ L 
Sbjct: 50  SSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKL-LC 108

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
            FVP+++T P +LK CA++ A+ EGKQIH  VLK+G   D FV +SL++MY++ GE+E  
Sbjct: 109 DFVPDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELC 168

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
           R VF++   +D VS+ +LI GYA  G ++ A ++F+EMP  +++F     +   ++   +
Sbjct: 169 RKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMP-EKDSF-----SWTILIDGLS 222

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
             G LE    V   +       N    NA+I+ Y K GD   A++LF+ + +R +++WN 
Sbjct: 223 KSGKLEAARDVFDRMPIR----NSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNS 278

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           MI GY     + +AL LF  ML+ +I PN  T L  + A + + +L  G+W+H+YI K+ 
Sbjct: 279 MITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSG 338

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF 424
            K + V L T LI+MY+KCG++K+A +VF  +  K L  W ++I GL MHG  ++ L LF
Sbjct: 339 FKTDGV-LGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELF 397

Query: 425 SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484
             M   GL+P  ITF+GVL+AC+HAG  +   +YF  M  DY I P ++HYGC++D+L R
Sbjct: 398 DEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCR 457

Query: 485 AGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL 544
           AG  +EA+  ++ M +K +  IWTSLL   R HG + +GE  A+HL++L P+  G YV+L
Sbjct: 458 AGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVIL 517

Query: 545 SNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEML 604
           SNMYA AG W+ V  +R  +  KGMKK PGCSSIE    +HEF+VGDK HPQ++ IY  L
Sbjct: 518 SNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKL 577

Query: 605 DEIDALLEKSGFVPDTSEVLYDMDEE-WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKN 663
            E+   L  +G +PDT++VL  ++E+  KE  L  HSE+LAIA+GL++ K G+ IRI+KN
Sbjct: 578 CEMKKKLNVAGHIPDTTQVLLCLEEDNEKEAELETHSERLAIAFGLLNIKHGSPIRIIKN 637

Query: 664 LRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           LR+C +CH+ TKL+S I+NREII RD +RFHHFK G+CSC D+W
Sbjct: 638 LRICNDCHAVTKLLSHIYNREIIIRDGSRFHHFKSGSCSCKDFW 681


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 277/689 (40%), Positives = 417/689 (60%), Gaps = 13/689 (1%)

Query: 20  SSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKT-GLHNTQFALSKLIEICAVSPFG 78
           SS    K L   P+     +  +    KQ+H+Q I+T  L +T    S  I I   +   
Sbjct: 3   SSKALIKTLIKNPT-----RIKSKSQAKQLHAQFIRTQSLSHT----SASIVISIYTNLK 53

Query: 79  DLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILK 138
            L  ALLVF+T+  P  + W ++IR  +  S    A+  +V M  SG  P+   FP +LK
Sbjct: 54  LLHEALLVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLK 113

Query: 139 SCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVS 198
           SC  +  +  G+ +H  +++LG++ D +   +L+NMY++   ++S R VF     +D VS
Sbjct: 114 SCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVS 173

Query: 199 YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           Y  +I GYA  G  +DA ++  EM     +  P+  T+ +VL   +    +  G  +   
Sbjct: 174 YNTVIAGYAQSGMYEDALRMVREMGT--SDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGY 231

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
           +   G+ S++++ ++L+DMY+K   +  +  +F  + +RD ISWN ++ GY     Y EA
Sbjct: 232 VIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEA 291

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
           L LFRQM+ + + P  V F SV+PACA+L  L LGK +H Y+ +      N+ + ++L+D
Sbjct: 292 LRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFG-RNIFIASALVD 350

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
           MY+KCGNI+AA ++FD M      SW A+I G A+HG   +A+SLF  M  +G++P+ + 
Sbjct: 351 MYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVA 410

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
           FV VL+AC+H GL+D    YFN+M + Y ++ +L+HY  + DLLGRAG  +EA   +  M
Sbjct: 411 FVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKM 470

Query: 499 EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVA 558
            ++P  ++W++LL +C VH  LEL E VA+ +  ++ EN GAYVL+ NMYA  GRW ++A
Sbjct: 471 RVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMA 530

Query: 559 TIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVP 618
            +R R+  KG++K P CS IE+ +  H F+ GD+ HP    I E L  +   +EK G+V 
Sbjct: 531 KLRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDRINEFLKAVMEQMEKEGYVA 590

Query: 619 DTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLIS 678
           DTS VL+D+DEE K   L  HSE+LA+A+G+I+T+PGTTIR+ KN+R+C +CH A K IS
Sbjct: 591 DTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFIS 650

Query: 679 KIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           KI  REII RD +RFHHF  G+CSC DYW
Sbjct: 651 KITEREIIVRDNSRFHHFNRGSCSCGDYW 679


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  550 bits (1417), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 296/723 (40%), Positives = 437/723 (60%), Gaps = 43/723 (5%)

Query: 23  PPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSY 82
           PP         L  LS C ++ +IKQ+H+ I++T +++   +   L  +   S   +LSY
Sbjct: 5   PPIASTAANTILEKLSFCKSLNHIKQLHAHILRTVINHKLNSF--LFNLSVSSSSINLSY 62

Query: 83  ALLVFETI-REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCA 141
           AL VF +I   P  +++N  +R  S SS P   I FY R+   G   + ++F  ILK+ +
Sbjct: 63  ALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVS 122

Query: 142 KISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTA 201
           K+SA+ EG ++H    K+    DPFV T  ++MYA  G +  AR VF++ S RD V++  
Sbjct: 123 KVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNT 182

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS-LIE 260
           +I  Y   G +D+A +LF+EM  ++ N +P+E  +  ++SAC   G++     +   LIE
Sbjct: 183 MIERYCRFGLVDEAFKLFEEM--KDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIE 240

Query: 261 GH----------------GLG--------------SNLHVTNALIDMYSKCGDLVKARDL 290
                             G G               NL V+ A++  YSKCG L  A+ +
Sbjct: 241 NDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVI 300

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350
           F+  EK+D++ W  MI  Y  +   +EAL +F +M  S I+P+ V+  SV+ ACA LG L
Sbjct: 301 FDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGIL 360

Query: 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISG 410
           D  KW+H+ I  N  + + +S+  +LI+MYAKCG + A   VF+ M  + + SW++MI+ 
Sbjct: 361 DKAKWVHSCIHVNGLE-SELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINA 419

Query: 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470
           L+MHG+A  ALSLF+RM  E ++P+++TFVGVL  C+H+GL++ G++ F +M  +Y I+P
Sbjct: 420 LSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITP 479

Query: 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHL 530
           KL+HYGCMVDL GRA L  EA  ++++M +  +  IW SL+ ACR+HG LELG+  AK +
Sbjct: 480 KLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRI 539

Query: 531 LELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVG 590
           LELEP++ GA VL+SN+YA   RW+DV  IR  + +K + K  G S I+     HEFL+G
Sbjct: 540 LELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIG 599

Query: 591 DKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLI 650
           DK H QS  IY  LDE+ + L+ +G+VPD   VL D++EE K+  +  HSEKLA+ +GL+
Sbjct: 600 DKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLM 659

Query: 651 STKPGT------TIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCN 704
           + +          IRIVKNLRVC +CH   KL+SK++ REII RDR RFH +K+G CSC 
Sbjct: 660 NEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCR 719

Query: 705 DYW 707
           DYW
Sbjct: 720 DYW 722


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  549 bits (1415), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 266/590 (45%), Positives = 387/590 (65%), Gaps = 16/590 (2%)

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           M+ +  +P+  +F  IL+SCA       G+  H  ++K+G E D  + T L++ YA+ G+
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
           L+ A+ VF     RD V+  A+I+  +  GY+++AR LFD M  R      N  +  +++
Sbjct: 61  LKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTER------NSCSWNSMI 114

Query: 241 SACAHMGSLELGNWV--CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI-EKR 297
           +    +G +     +  C+ ++      ++   NA+ID Y K   LV A++LF  +   R
Sbjct: 115 TCYCKLGDINSARLMFDCNPVK------DVVSWNAIIDGYCKSKQLVAAQELFLLMGSAR 168

Query: 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357
           + ++WN MI  Y    ++  A+ +F+QM   N++P +VT +S+L ACA+LGALD+G+WIH
Sbjct: 169 NSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIH 228

Query: 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA 417
            YI     K++ V L  +LIDMY KCG ++AA  VF G+  K +  WN++I GL M+G+ 
Sbjct: 229 GYIRTKRLKID-VVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRG 287

Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
           ++A++ F  M  EG++PD +TFVG+LS C+H+GLL  G++YF+ M+  Y + P ++HYGC
Sbjct: 288 EEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGC 347

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537
           MVDLLGRAG   EA  L++ M MKP++ +  SLL AC++H   +LGE V + LLEL+P +
Sbjct: 348 MVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCD 407

Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQS 597
            G YV LSN+YA   RWDDV T R  +  +G+ K PGCSSIEV ++VHEF+ GD  HPQ 
Sbjct: 408 GGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQF 467

Query: 598 KHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTT 657
             I   LDEI   L+  G VP+T+ VL+D++EE KEGA+ +HSE++A+A+GL+ST PG T
Sbjct: 468 TQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKT 527

Query: 658 IRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           IR+VKNLR C +CHSA KLIS  F REII RDR RFHHF++G+CSCNDYW
Sbjct: 528 IRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 577



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 3/202 (1%)

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           N V WN +I  +        AI  + +M      P   T   +L +CA + A+  G+ IH
Sbjct: 169 NSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIH 228

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
            ++    L+ D  +  +LI+MY + G LE+A  VF+  S ++   + ++I G    G  +
Sbjct: 229 GYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGE 288

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG-HGLGSNLHVTN 272
           +A   F  + + +E   P+  T V +LS C+H G L  G    S + G +GL   +    
Sbjct: 289 EAIAAF--IVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYG 346

Query: 273 ALIDMYSKCGDLVKARDLFESI 294
            ++D+  + G L +A +L  ++
Sbjct: 347 CMVDLLGRAGYLKEALELIRAM 368


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  549 bits (1415), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 279/679 (41%), Positives = 408/679 (60%), Gaps = 78/679 (11%)

Query: 32  PSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           P L LL  C+N +++K +H+ +++T L    FA S+LI  C  S    L YA+ V   I+
Sbjct: 19  PKLVLLECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQ 78

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
            PN  I+N +IRG S S +P  +  +Y++ +  G +P+  T PF++K+CA++     G Q
Sbjct: 79  NPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQ 138

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
            H   +K G E D +V  SL++M                               YAS G 
Sbjct: 139 THGQAIKHGFEQDFYVQNSLVHM-------------------------------YASVGD 167

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
           ++ AR +F  M                    C      ++ +W C               
Sbjct: 168 INAARSVFQRM--------------------C----RFDVVSWTC--------------- 188

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
             +I  Y +CGD   AR+LF+ + +R++++W+ MI GY   + +++A+  F  +    + 
Sbjct: 189 --MIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVV 246

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
            N+   + V+ +CA+LGAL +G+  H Y+ +N   LN + L T+++DMYA+CGN++ A  
Sbjct: 247 ANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLI-LGTAVVDMYARCGNVEKAVM 305

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VF+ +  K +  W A+I+GLAMHG A+KAL  FS M  +G  P DITF  VL+AC+HAG+
Sbjct: 306 VFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGM 365

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           ++ G + F +M +D+ + P+L+HYGCMVDLLGRAG   +AE  +  M +KP+A IW +LL
Sbjct: 366 VERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALL 425

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
           GACR+H  +E+GE V K LLE++PE  G YVLLSN+YA A +W DV  +R  + DKG++K
Sbjct: 426 GACRIHKNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRK 485

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEK---SGFVPDTSEVLYDMD 628
            PG S IE+   VHEF +GDK HP+ + I  + ++I  +L K   +G+V +T+E ++D+D
Sbjct: 486 PPGYSLIEIDGKVHEFTIGDKTHPEIEKIERIWEDI--ILPKIKLAGYVGNTAETMFDID 543

Query: 629 EEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIAR 688
           EE KEGAL  HSEKLAIAYG++  +  T IRIVKNLRVC +CH+ATKLISK+F  E+I R
Sbjct: 544 EEEKEGALHRHSEKLAIAYGIMKIRAPTPIRIVKNLRVCEDCHTATKLISKVFEVELIVR 603

Query: 689 DRNRFHHFKDGNCSCNDYW 707
           DRNRFHHFK+G CSC DYW
Sbjct: 604 DRNRFHHFKEGTCSCMDYW 622


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 273/675 (40%), Positives = 427/675 (63%), Gaps = 8/675 (1%)

Query: 36  LLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           ++  C +++N++    +H  + K GL    F  + L+++       ++  A  +F+ ++E
Sbjct: 36  VIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCR--EIEDARFLFDKMQE 93

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V W  +I G++       ++  + +M   G VP+      ++ +CAK+ A+ + + I
Sbjct: 94  RDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARII 153

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
             ++ +   + D  + T++I+MYA+ G +ESAR +F++   ++ +S++A+I  Y   G  
Sbjct: 154 DDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQG 213

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
             A  LF  M       +P++ T+ ++L AC+ + +L++G  +  ++   GL  +  V  
Sbjct: 214 RKALDLFRMML--SSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCA 271

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           AL+DMY KC ++  AR LF+ + +RD+++W VMIGGY    +  E+L+LF +M +  + P
Sbjct: 272 ALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVP 331

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           + V  ++V+ ACA LGA+   + I  YI +   +L+ V L T++IDM+AKCG +++A ++
Sbjct: 332 DKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLD-VILGTAMIDMHAKCGCVESAREI 390

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           FD M  K + SW+AMI+    HG+  KAL LF  M+  G+ P+ IT V +L AC+HAGL+
Sbjct: 391 FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLV 450

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           + G ++F+ M +DY +   ++HY C+VDLLGRAG  DEA  L+++M ++ D  +W + LG
Sbjct: 451 EEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLG 510

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           ACR H  + L E  A  LLEL+P+NPG Y+LLSN+YA AGRW+DVA  R  ++ + +KK+
Sbjct: 511 ACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKI 570

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
           PG + IEV +  H+F VGD  HP+SK IYEML  +   LE  G+VPDT+ VL+D+DEE K
Sbjct: 571 PGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELK 630

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
            G L  HSEKLAIA+GLI+T   T IRI+KNLRVCG+CH+  KL+S I  R II RD NR
Sbjct: 631 IGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANR 690

Query: 693 FHHFKDGNCSCNDYW 707
           FHHFK+G CSC DYW
Sbjct: 691 FHHFKEGACSCGDYW 705



 Score =  254 bits (649), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 139/402 (34%), Positives = 229/402 (56%), Gaps = 5/402 (1%)

Query: 118 YVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ 177
           +  +I  G  P+ YT PF++++C  +  +  G+ IH  V K GL+ D FV  +L++MY +
Sbjct: 18  FRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVK 77

Query: 178 NGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVV 237
             E+E AR +F+K   RD V++T +I GYA  G  +++  LF++M  REE  VP++  +V
Sbjct: 78  CREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKM--REEGVVPDKVAMV 135

Query: 238 TVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR 297
           TV+ ACA +G++     +   I+      ++ +  A+IDMY+KCG +  AR++F+ +E++
Sbjct: 136 TVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEK 195

Query: 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357
           +VISW+ MI  Y +    ++AL LFR ML S + P+ +T  S+L AC+ L  L +G+ IH
Sbjct: 196 NVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIH 255

Query: 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA 417
             + K    L++  +  +L+DMY KC  I+ A  +FD M  + L +W  MI G A  G A
Sbjct: 256 HIVYKFGLDLDHF-VCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNA 314

Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
           +++L LF +M  EG+ PD +  V V+ AC   G +   R   +  IQ  K    +     
Sbjct: 315 NESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKART-IDDYIQRKKFQLDVILGTA 373

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
           M+D+  + G  + A  +   ME K +   W++++ A   HG+
Sbjct: 374 MIDMHAKCGCVESAREIFDRMEEK-NVISWSAMIAAYGYHGQ 414



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 110/219 (50%), Gaps = 11/219 (5%)

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           M+GG+    DY      FR++++    P++ T   V+ AC  L  L +G+ IH  + K  
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF 424
             L++  +  +L+DMY KC  I+ A  +FD M  + L +W  MI G A  GKA+++L LF
Sbjct: 61  LDLDHF-VCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLF 119

Query: 425 SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQ----HYGCMVD 480
            +M  EG+ PD +  V V+ AC   G +   R     +I DY    K Q        M+D
Sbjct: 120 EKMREEGVVPDKVAMVTVVFACAKLGAMHKAR-----IIDDYIQRKKFQLDVILGTAMID 174

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
           +  + G  + A  +   ME K +   W++++ A   HG+
Sbjct: 175 MYAKCGCVESAREIFDRMEEK-NVISWSAMIAAYGYHGQ 212


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 286/680 (42%), Positives = 428/680 (62%), Gaps = 49/680 (7%)

Query: 30  NQPSLALLSKCT---NMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLV 86
           ++ ++ LL +C    +M+ + ++ +QII + + +    +  +  I   S  G+L +++L+
Sbjct: 21  HRKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLI 80

Query: 87  FET-IREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPN--TYTFPFILKSCAKI 143
           F   +  PN   +N +++  S  ++    I ++   ++    PN   YTF  +LK+CA +
Sbjct: 81  FNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGL 140

Query: 144 SAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALI 203
           + + EG+++H  V K G ES+ FV  SL+++Y + G    A+ +F++  +RD VS+  LI
Sbjct: 141 AQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLI 200

Query: 204 TGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG 263
           +GY   G +D AR +FD M   E+N V                      +W         
Sbjct: 201 SGYCFSGMVDKARMVFDGM--MEKNLV----------------------SW--------- 227

Query: 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFR 323
                   + +I  Y++ G+L +AR LFE++  R+V+SWN MI GY     Y +A+ LFR
Sbjct: 228 --------STMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFR 279

Query: 324 QML-QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
           QM  +  + PNDVT +SVL ACA+LGALDLGKWIH +I +N  ++  + L  +L DMYAK
Sbjct: 280 QMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVG-LFLGNALADMYAK 338

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
           CG +  A+ VF  M  + + SW+ +I GLAM+G A++A + F+ MI +GL+P+DI+F+G+
Sbjct: 339 CGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGL 398

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
           L+AC HAGL+D G +YF+ M Q Y I+PK++HYGC+VDLL RAG  D+AE+L+ +M M+P
Sbjct: 399 LTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQP 458

Query: 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562
           +  +W +LLG CR++   E GE V   +LEL+  + G+ V L+N+YA  GR DD A+ R 
Sbjct: 459 NVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRL 518

Query: 563 RLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSE 622
           R+ D    K PGCS IE+ + V+EF +GD  HPQS  IY M+ E+   ++ +G+ P T  
Sbjct: 519 RMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDL 578

Query: 623 VLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFN 682
           V++++DEE KE ALS HSEKLA+A+GLI+T  GTTIRIVKNLRVC +CH A K+ISKI  
Sbjct: 579 VIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVE 638

Query: 683 REIIARDRNRFHHFKDGNCS 702
           REI+ RDR+RFHHFKDG CS
Sbjct: 639 REIVVRDRSRFHHFKDGKCS 658


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 274/605 (45%), Positives = 385/605 (63%), Gaps = 35/605 (5%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYA--QNGELESARLVFNKSSL 193
           IL+  +    + +  QIHA  +  G+ SD FV + +++  A   +G +  AR +F +   
Sbjct: 38  ILRHLSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRK 97

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
            D      LI  YA      DA   + EM      F P+  T   +L AC+ + SL LG 
Sbjct: 98  PDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVF-PDVHTFPLLLKACSEIPSLRLGE 156

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYS-------------------------------KCG 282
            + S +   G  S + V+N L+ MY+                               KCG
Sbjct: 157 AIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCG 216

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
               AR +FE++  RDV+SW+VMI GY   S +KE L LF+ M+   IEPN+   ++ L 
Sbjct: 217 VFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALS 276

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           ACA+LGA++ G+WI  Y+++ + +L  V L T+LIDMY+KCG+++ A +VF  M  K + 
Sbjct: 277 ACAHLGAMEQGQWIERYMERKNVRLT-VRLGTALIDMYSKCGSVERALEVFHKMKEKNVL 335

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           +W+AMI+GLA++G+   AL+LFS+M  +G++P+++TF+G+L+AC+H+ L+D G  +F++M
Sbjct: 336 AWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSM 395

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
              Y + P   H+ CMVDL GRAG+ D+A+ ++K+M  KP++AIW +LL ACR+HG  EL
Sbjct: 396 TSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTEL 455

Query: 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582
           GE V K LLEL+P + G YVLLSN+YA  GRWD VA +R  + ++ + K PGCS I++G 
Sbjct: 456 GEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGD 515

Query: 583 VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEK 642
            +HEF+ GD  HPQ + IY  L E+   L+ +G+ PDT +VL DMDEE KE AL HHSEK
Sbjct: 516 TIHEFVAGDSSHPQLEMIYAKLGEMSQELKAAGYKPDTGQVLLDMDEEEKETALCHHSEK 575

Query: 643 LAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCS 702
           LAIA+GLI T PGTTIRI KNLRVC +CHSATKLISKI+NREII RDR RFHHF+DG+CS
Sbjct: 576 LAIAFGLIKTDPGTTIRITKNLRVCADCHSATKLISKIYNREIIVRDRCRFHHFRDGSCS 635

Query: 703 CNDYW 707
           C D+W
Sbjct: 636 CMDFW 640



 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 151/463 (32%), Positives = 247/463 (53%), Gaps = 42/463 (9%)

Query: 6   SSLTLSPSILHFPPSSD-----PPY----KLLQNQPSLALLSKCTNMQNIKQVHSQIIKT 56
           +  T+SP  L  P  S+     PP+    +LL   P L  LS C  ++++ Q+H+Q I T
Sbjct: 4   ARFTVSP--LSLPSQSNLQNQNPPWIPTPQLLCKYPILRHLSSCKTLKDLTQIHAQTITT 61

Query: 57  GLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIK 116
           G+ +  F  S+++   A+SP G + YA  +F  IR+P+  I N +IR ++ S +P+ A+ 
Sbjct: 62  GIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVV 121

Query: 117 FYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMY 175
           FY  M  S  V P+ +TFP +LK+C++I ++  G+ IH+HV KLG  S+  V   L+ MY
Sbjct: 122 FYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMY 181

Query: 176 AQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE--------- 226
           A  G +ESA LVF+++   D  S+  +I GY   G    AR++F+ MP R+         
Sbjct: 182 ASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMIN 241

Query: 227 --------------------ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS 266
                               E   PNES +V  LSACAH+G++E G W+   +E   +  
Sbjct: 242 GYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRL 301

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML 326
            + +  ALIDMYSKCG + +A ++F  +++++V++W+ MI G       K+AL LF QM 
Sbjct: 302 TVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQME 361

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
              ++PN+VTF+ +L AC++   +D G      +   +    N      ++D+Y + G +
Sbjct: 362 MQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGML 421

Query: 387 KAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMI 428
             A+ V   M +K   A W A+++   +HG  +    +  R++
Sbjct: 422 DQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLL 464


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  546 bits (1408), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 296/727 (40%), Positives = 436/727 (59%), Gaps = 43/727 (5%)

Query: 19  PSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFG 78
           P   P + +      L  LS C ++ +IKQ+H+ I++T +++   +    +     S   
Sbjct: 4   PPPRPSFAVSAANTILEKLSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLS--FSSSSI 61

Query: 79  DLSYALLVFETIRE-PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           +LSYAL +F +I   P  +++N+++R  S S  P   I FY R+   G   +  +FP IL
Sbjct: 62  NLSYALNLFSSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPIL 121

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
           K+ +K+SA+ EG ++H    K+   SDPFV T L++MYA  G +  AR VF++ S RD V
Sbjct: 122 KAVSKVSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVV 181

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           ++  +I  Y   G LD+A +LF+EM  ++ N +P+E  +  ++SAC   G++     +  
Sbjct: 182 TWNTMIERYCRFGLLDEAFKLFEEM--KDSNVMPDEMILCNIVSACGRTGNMRYNRAIYD 239

Query: 258 -LIEGH----------------GLG--------------SNLHVTNALIDMYSKCGDLVK 286
            LIE                  G G               NL V+ A++  YSK G L  
Sbjct: 240 FLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDD 299

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           AR +F+  E +D++ W  MI  Y  +   +EAL +F +M  S I+P+ VT LSV+ AC  
Sbjct: 300 ARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVN 359

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
           LG LD  KW+H Y   N  + + + +  +LI+MYAKCG + AA  VF+ M  + + SW++
Sbjct: 360 LGTLDKAKWVHRYTHLNGLE-SVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSS 418

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
           MI+  AMHG+A  +LSLF++M  E ++P+++TFVGVL  C+H+GL++ G++ F +M  +Y
Sbjct: 419 MINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEY 478

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
            I+PK++HYGCMVDL GRA L  EA  ++++M M P+  IW SL+ ACRVHG LELGE  
Sbjct: 479 NITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELA 538

Query: 527 AKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHE 586
           AK +L+LEP++ GA VL+SN+YA   RWD V  IR  +  K + K  G S I++    HE
Sbjct: 539 AKRILKLEPDHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHE 598

Query: 587 FLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIA 646
           FL+GDK H QS  IY  L E+ + L+ +G+VPD   VL D++EE K+  +  HSEKLA+ 
Sbjct: 599 FLIGDKRHKQSNEIYTKLYEVVSKLKLAGYVPDGGSVLVDVEEEEKKDLVLWHSEKLALC 658

Query: 647 YGLISTKPGT------TIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGN 700
           +GL++ +          IRIVKNLRVC +CH+  KL+SK++  EII RDR RFH +KDG 
Sbjct: 659 FGLMNKEKEEEKGSCGVIRIVKNLRVCEDCHAFFKLVSKVYELEIIVRDRTRFHRYKDGL 718

Query: 701 CSCNDYW 707
           CSC DYW
Sbjct: 719 CSCRDYW 725


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  546 bits (1408), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 283/684 (41%), Positives = 406/684 (59%), Gaps = 75/684 (10%)

Query: 26  KLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALL 85
           + +   P+++++  CT ++ +KQ+H+Q++  GL N    + + +   A++   +L Y+  
Sbjct: 5   RCIVKHPTISMVEPCTTLRELKQIHTQLLINGLLNDPQLVGQFVASIALNNPNNLHYSNQ 64

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG--FVPNTYTFPFILKSCAKI 143
           V +  + P    +N++IR HS SS+P  +  FY R++ S     P+ YTF F++++ A++
Sbjct: 65  VLDNSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQL 124

Query: 144 SAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALI 203
            A   G  +H   +K G E DP V + LI M                             
Sbjct: 125 LAHGTGSSVHGAAVKYGFEYDPHVQSGLIYM----------------------------- 155

Query: 204 TGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG 263
             YA  G LD   ++F    I E + V   + V    SACA MG                
Sbjct: 156 --YAELGGLDACHRVFSS--ICEPDLVCQTAMV----SACAKMG---------------- 191

Query: 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFR 323
                              D+  AR LF+ +  +D I+WN MI GY      +EAL LF 
Sbjct: 192 -------------------DVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFN 232

Query: 324 QMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383
            M +  ++ N+V+ +SVL AC++LGALD G+W HAYI++N  ++  ++L T+LIDMYAKC
Sbjct: 233 LMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMT-LTLGTALIDMYAKC 291

Query: 384 GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
           GN+  A +VF GM  K + +W++ I GLAM+G  +K L LFS M  + +QP++ITFV VL
Sbjct: 292 GNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVL 351

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
             C+  GL++ GR++F +M + Y I P+L+HYGCMVDL GRAG  DEA   + +M ++P 
Sbjct: 352 RGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPH 411

Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563
              W +LL AC+++  +E+GE  ++ ++ELE +N GAYVLLSN+YA +  WD V+ +R  
Sbjct: 412 VGAWGALLNACKIYRNMEMGELASRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNVRQT 471

Query: 564 LNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEV 623
           +N KG++K PGCS IEVG  VHEF VGDK HP+   I  ML EI   L+ SG+V +T+ V
Sbjct: 472 MNVKGVRKQPGCSVIEVGGEVHEFFVGDKSHPRYAEIQVMLGEISRRLKLSGYVANTNPV 531

Query: 624 LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNR 683
            +D++EE KE AL  HSEK+AIA+GLIS  P   IRIVKNLRVC +CH ATK+ISK FNR
Sbjct: 532 FFDIEEEEKEDALCMHSEKIAIAFGLISLSPDVPIRIVKNLRVCWDCHDATKMISKAFNR 591

Query: 684 EIIARDRNRFHHFKDGNCSCNDYW 707
           EI+ RDRNRFHHF+DG CSC  YW
Sbjct: 592 EIVVRDRNRFHHFRDGECSCKGYW 615


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  546 bits (1406), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 288/682 (42%), Positives = 405/682 (59%), Gaps = 56/682 (8%)

Query: 37  LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICA-VSPFGDLSYALLVFETIREPNQ 95
           L  C  +  +KQ+H QI K GL      L+KL+   A ++    L YA   FE  +E  +
Sbjct: 32  LRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVR 91

Query: 96  -----VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
                 + N++IRG+S +     AI  YVRM++ G  PN YTFPF+L  C KI+A  EG 
Sbjct: 92  SDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGI 151

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           Q+H  V+K+GLE D F+   LI+ YA+ G ++    VF   S R+ VS+T+LI GYA   
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGD 211

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
              +A  LF EM                                            N  +
Sbjct: 212 RPKEAVSLFFEML-------------------------------------------NKVM 228

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            NAL+DMY KCG +  A+ LF+    R+++ +N ++  Y      +EAL +  +MLQ   
Sbjct: 229 VNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGP 288

Query: 331 EPNDVTFLSVLPACAYLGALDLGK-----WIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
            P+ VT LS + A A L  L  GK     W+H YI+KN    + + L T+L+DM+A+CG+
Sbjct: 289 RPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCD-MRLNTALVDMFARCGD 347

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
            ++A QVF+ M  + +++W A I  +AM G  + A  LF++M+ +G++PD + FV VL+A
Sbjct: 348 PQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTA 407

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           C+H G ++ G   F+ M +D+ ISP+++HYGCMVDLLGRAGL  EA  L+K+M M+P+  
Sbjct: 408 CSHGGQVEQGLHIFSLM-EDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDV 466

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
           +W SLL ACRVH  +E+    A+ + EL P+  G +VLLSN+YA AG+W DVA +R  L 
Sbjct: 467 VWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLR 526

Query: 566 DKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLY 625
           +KG++KVPG SS++V  V+HEF  GD+ HP+  HI  ML E++     +G +PD S VL 
Sbjct: 527 EKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLL 586

Query: 626 DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREI 685
           D+DE+ KE  LS HSEKLAIA+GLI+T     IR+VKNLR+C +CHS  K+ S I+NREI
Sbjct: 587 DVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASIIYNREI 646

Query: 686 IARDRNRFHHFKDGNCSCNDYW 707
           I RD NRFH F+ G CSC DYW
Sbjct: 647 IVRDNNRFHFFRQGLCSCCDYW 668


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 279/678 (41%), Positives = 418/678 (61%), Gaps = 11/678 (1%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LL  C   ++I   +++H  +  +      F L+  I I   S  G  S + +VF+ +R 
Sbjct: 111 LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRI-ITMYSMCGSPSDSRMVFDKLRR 169

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMI-LSGFVPNTYTFPFILKSCAKISAISEGKQ 151
            N   WN I+  ++ +     A+  +  +I ++   P+ +T P ++K+CA +  +  G+ 
Sbjct: 170 KNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQI 229

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESA-RLVFNKSSLRDAVSYTALITGYASRG 210
           IH    K+ L SD FV  +LI MY + G +E A + VF+    +   S+ AL+ GYA   
Sbjct: 230 IHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNS 289

Query: 211 YLDDARQLFD-EMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
              D R+  D  + + +    P+  T+ ++L AC+ M SL  G  +      +GL  +  
Sbjct: 290 ---DPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPF 346

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           +  +L+ +Y  CG    A+ LF+ +E R ++SWNVMI GY+      EA+ LFRQML   
Sbjct: 347 IGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDG 406

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           I+P ++  + V  AC+ L AL LGK +H +  K H    ++ + +S+IDMYAK G I  +
Sbjct: 407 IQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLT-EDIFVSSSIIDMYAKGGCIGLS 465

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
           +++FD +  K +ASWN +I+G  +HG+  +AL LF +M+  GL+PDD TF G+L AC+HA
Sbjct: 466 QRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHA 525

Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
           GL++ G +YFN M+  + I PKL+HY C+VD+LGRAG  D+A  L++ M   PD+ IW+S
Sbjct: 526 GLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSS 585

Query: 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
           LL +CR+HG L LGE VA  LLELEPE P  YVL+SN++AG+G+WDDV  +R R+ D G+
Sbjct: 586 LLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGL 645

Query: 570 KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE 629
           +K  GCS IEVG  VH FL+GD++ P+ + + E    ++  +   G+ PDT  VL+D++E
Sbjct: 646 QKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEE 705

Query: 630 EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
           E K G L  HSEKLAI++GL++T  G  +R+ KNLR+CG+CH+A K ISK+ NR+I+ RD
Sbjct: 706 EDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRD 765

Query: 690 RNRFHHFKDGNCSCNDYW 707
             RFHHF+DG CSC DYW
Sbjct: 766 NKRFHHFRDGICSCGDYW 783


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 276/680 (40%), Positives = 432/680 (63%), Gaps = 10/680 (1%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
            +   C+N +NI   K +   ++KTG   +   +   +    V   GDL  A  VF+ + 
Sbjct: 47  GVFRACSNKENISLGKIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMP 106

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           + N V W  +I           A+  ++ M+LSG+VP+ +T   ++ +CA++  +S G+Q
Sbjct: 107 DRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQ 166

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQ---NGELESARLVFNKSSLRDAVSYTALITGYAS 208
            H  V+K GL+ D  V  SL++MYA+   +G ++ AR VF++  + + +S+TA+ITGY  
Sbjct: 167 FHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQ 226

Query: 209 RGYLD-DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
            G  D +A +LF EM   +    PN  T  +VL ACA++  + LG  V +L+    L S 
Sbjct: 227 SGGCDREAIELFLEMV--QGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASI 284

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
             V N+LI MYS+CG++  AR  F+ + +++++S+N ++  Y  + + +EA  LF ++  
Sbjct: 285 NCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEG 344

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
           +    N  TF S+L   + +GA+  G+ IH+ I K+  K +N+ +  +LI MY++CGNI+
Sbjct: 345 AGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFK-SNLHICNALISMYSRCGNIE 403

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
           AA QVF+ MG   + SW +MI+G A HG A +AL  F +M+  G+ P+++T++ VLSAC+
Sbjct: 404 AAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACS 463

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
           H GL+  G ++F +M  ++ I P+++HY C+VDLLGR+G  +EA  L+ +M  K DA + 
Sbjct: 464 HVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVL 523

Query: 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
            + LGACRVHG ++LG+  A+ +LE +P +P AY+LLSN++A AG+W++VA IR ++ ++
Sbjct: 524 RTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKER 583

Query: 568 GMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
            + K  GCS IEV + VH+F VGD  HPQ++ IY+ LD++   +++ G++P T  VL+D+
Sbjct: 584 NLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDELDQLALKIKELGYIPSTDFVLHDV 643

Query: 628 DEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIA 687
           +EE KE  L  HSEK+A+AYG IST     IR+ KNLRVCG+CH+A K  S +  +EI+ 
Sbjct: 644 EEEQKEQYLFQHSEKIAVAYGFISTSTSRPIRVFKNLRVCGDCHTAFKYFSIVRRKEIVL 703

Query: 688 RDRNRFHHFKDGNCSCNDYW 707
           RD NRFHHFKDG CSCNDYW
Sbjct: 704 RDANRFHHFKDGTCSCNDYW 723



 Score =  218 bits (555), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 140/430 (32%), Positives = 232/430 (53%), Gaps = 13/430 (3%)

Query: 96  VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAH 155
           V W+ +I  ++ +     AI  +  M+  GF PN Y F  + ++C+    IS GK I   
Sbjct: 8   VSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIFGF 67

Query: 156 VLKLG-LESDPFVHTSLINMYAQ-NGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
           +LK G  ESD  V  +LI+M+ + NG+LESA  VF++   R+ V++T +IT +   G+  
Sbjct: 68  LLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSR 127

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           DA  LF +M +    +VP+  T+  V+SACA MG L LG     L+   GL  ++ V  +
Sbjct: 128 DAVDLFLDMVL--SGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCS 185

Query: 274 LIDMYSKC---GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY-KEALMLFRQMLQSN 329
           L+DMY+KC   G +  AR +F+ +   +V+SW  +I GY  +    +EA+ LF +M+Q  
Sbjct: 186 LVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQ 245

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS-LWTSLIDMYAKCGNIKA 388
           ++PN  TF SVL ACA L  + LG+ ++A + K   +L +++ +  SLI MY++CGN++ 
Sbjct: 246 VKPNHFTFSSVLKACANLSDIWLGEQVYALVVK--MRLASINCVGNSLISMYSRCGNMEN 303

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A + FD +  K L S+N +++  A    +++A  LF+ + G G   +  TF  +LS  + 
Sbjct: 304 ARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASS 363

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
            G +  G Q  + +++       L     ++ +  R G  + A  +   M    +   WT
Sbjct: 364 IGAIGKGEQIHSRILKS-GFKSNLHICNALISMYSRCGNIEAAFQVFNEMG-DGNVISWT 421

Query: 509 SLLGACRVHG 518
           S++     HG
Sbjct: 422 SMITGFAKHG 431



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/277 (33%), Positives = 149/277 (53%), Gaps = 9/277 (3%)

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
           RD VS++ALI+ YA+     +A   F +M   E  F PNE     V  AC++  ++ LG 
Sbjct: 5   RDLVSWSALISCYANNEKAFEAISAFFDML--ECGFYPNEYCFTGVFRACSNKENISLGK 62

Query: 254 WVCSLIEGHG-LGSNLHVTNALIDMYSKC-GDLVKARDLFESIEKRDVISWNVMIGGYTH 311
            +   +   G   S++ V  ALIDM+ K  GDL  A  +F+ +  R+V++W +MI  +  
Sbjct: 63  IIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQ 122

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
               ++A+ LF  M+ S   P+  T   V+ ACA +G L LG+  H  + K+   L +V 
Sbjct: 123 LGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDL-DVC 181

Query: 372 LWTSLIDMYAKC---GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADK-ALSLFSRM 427
           +  SL+DMYAKC   G++  A +VFD M    + SW A+I+G    G  D+ A+ LF  M
Sbjct: 182 VGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEM 241

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
           +   ++P+  TF  VL AC +   + +G Q +  +++
Sbjct: 242 VQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVK 278



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 8/221 (3%)

Query: 296 KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKW 355
           KRD++SW+ +I  Y +     EA+  F  ML+    PN+  F  V  AC+    + LGK 
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 356 IHAYIDKNHQKLNNVSLWTSLIDMYAKC-GNIKAAEQVFDGMGYKTLASWNAMISGLAMH 414
           I  ++ K     ++V +  +LIDM+ K  G++++A +VFD M  + + +W  MI+     
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 415 GKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQH 474
           G +  A+ LF  M+  G  PD  T  GV+SAC   GLL +GRQ F+ ++    +   +  
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQ-FHCLVMKSGLDLDVC- 181

Query: 475 YGC-MVDLLGRA---GLFDEAEALLKTMEMKPDAAIWTSLL 511
            GC +VD+  +    G  D+A  +   M +  +   WT+++
Sbjct: 182 VGCSLVDMYAKCVADGSVDDARKVFDRMPVH-NVMSWTAII 221


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 273/675 (40%), Positives = 424/675 (62%), Gaps = 9/675 (1%)

Query: 36  LLSKC---TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LL  C    +++  K++H Q+I  G  +  FA++ ++ + A     + +Y +  F+ + E
Sbjct: 181 LLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKM--FDRMPE 238

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V WN II G++ +     A++  +RM   G  P++ T   IL + A + ++  G+ I
Sbjct: 239 RDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSI 298

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H + ++ G ES   V T+L++MY++ G + +ARL+F++ + +  VS+ ++I GY   G  
Sbjct: 299 HGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDP 358

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
             A ++F +M   +E       TV+  L ACA +G +E G +V  L++   LGS++ V N
Sbjct: 359 GAAMEIFQKM--MDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMN 416

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           +LI MYSKC  +  A ++FE+++ + ++SWN MI GY       EA+  F +M   NI+P
Sbjct: 417 SLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKP 476

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           +  T +SV+PA A L  L   KWIH  + +      NV + T+L+DMYAKCG +  A ++
Sbjct: 477 DSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLD-KNVFVATALVDMYAKCGAVHTARKL 535

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           FD M  + + +WNAMI G   HG    AL LF +M  E ++P+++TF+ VLSAC+H+GL+
Sbjct: 536 FDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLV 595

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           + G QYF +M +DY + P + HYG MVDLLGRA   +EA   ++ M ++P  +++ ++LG
Sbjct: 596 EEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLG 655

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           ACR+H  +ELGE  A  + +L+P++ G +VLL+N+YA A  WD VA +RT +  KG++K 
Sbjct: 656 ACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKT 715

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
           PG S +E+ + VH F  G   HPQ+K IY  L+ +   ++ +G++PDT+ V +D+++  K
Sbjct: 716 PGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRIKAAGYMPDTNSV-HDVEDVVK 774

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
           E  L+ HSEKLAIA+ L++T PGTTI + KNLRVCG+CH+ATK IS +  REII RD  R
Sbjct: 775 EQLLNSHSEKLAIAFSLLNTSPGTTIHLRKNLRVCGDCHNATKYISLVTKREIIVRDMRR 834

Query: 693 FHHFKDGNCSCNDYW 707
           FHHFKDG CSC DYW
Sbjct: 835 FHHFKDGTCSCGDYW 849



 Score =  280 bits (717), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 166/532 (31%), Positives = 284/532 (53%), Gaps = 24/532 (4%)

Query: 5   PSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFA 64
           PSS T  PS ++               PS  LL  CT+M+ + Q    IIK GL++    
Sbjct: 65  PSSRTYIPSHVY-------------KHPSAILLELCTSMKELHQFIPLIIKNGLYSEHLF 111

Query: 65  LSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILS 124
            +KL+ +     FG L  A  VF+ I +    +++ +++G++ +SS   A+ F+ RM   
Sbjct: 112 QTKLVSL--FCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYD 169

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
           G  P  Y F ++LK C   + + +GK+IH  ++  G  S+ F  T ++NMYA+   +E A
Sbjct: 170 GVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEA 229

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
             +F++   RD V +  +I+GYA  G+   A +L   M  +EE   P+  T+V++L A A
Sbjct: 230 YKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRM--QEEGKRPDSITIVSILPAVA 287

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
            +GSL +G  +       G  S ++V+ AL+DMYSKCG +  AR +F+ +  + V+SWN 
Sbjct: 288 DVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNS 347

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           MI GY    D   A+ +F++M+   +E  +VT +  L ACA LG ++ G+++H  +D+  
Sbjct: 348 MIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQ-L 406

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF 424
           +  ++VS+  SLI MY+KC  +  A ++F+ + +KTL SWNAMI G A +G+ ++A+  F
Sbjct: 407 ELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYF 466

Query: 425 SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484
            +M  + ++PD  T V V+ A     +L   + + + ++    +   +     +VD+  +
Sbjct: 467 CKMQLQNIKPDSFTMVSVIPALAELSVLPQAK-WIHGLVIRTCLDKNVFVATALVDMYAK 525

Query: 485 AGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG----RLELGESVAKHLLE 532
            G    A  L   M+ +     W +++     HG     LEL E + K +++
Sbjct: 526 CGAVHTARKLFDMMDER-HVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIK 576


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 271/618 (43%), Positives = 399/618 (64%), Gaps = 9/618 (1%)

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
           WN++I   +       +++ +  M      PN  TFP  +KSC+ +  ++ GKQ H   L
Sbjct: 50  WNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAHQQAL 109

Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ 217
             G ESD FV ++LI+MY++ G+L +AR++F++   R+ V++T+LITGY       +A  
Sbjct: 110 VFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALM 169

Query: 218 LFDEMPIR-------EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
           +F E           E     +   +++VLSAC+ + +  +   V  +    GL   + V
Sbjct: 170 VFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGV 229

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            N L+D Y+KCG++  +R +F+ + ++DV+SWN MI  Y       +A  +F  ML++  
Sbjct: 230 ENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGG 289

Query: 331 -EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
            + N+VT  ++L ACA+ GAL +G  +H  + K    +NNV + TS+IDMY KCG  + A
Sbjct: 290 GKYNEVTLSTLLLACAHEGALRVGMCLHDQVIK-MGYVNNVIMATSIIDMYCKCGQAEMA 348

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
              FDGM  K + SW AMI+G  MHG A +AL +F +MI  G++P+ ITF+ VL+AC+HA
Sbjct: 349 RNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHA 408

Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
           G L+ G ++FNAM  +Y + P ++HYGCMVDLLGRAG   EA  L+K+M+++ D  +W S
Sbjct: 409 GFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGS 468

Query: 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
           LL ACR+H  +EL E  A+ L +L+P N G YVLL+N+YA AGRW DV  +R  + D+G+
Sbjct: 469 LLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWKDVERMRILVKDRGL 528

Query: 570 KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE 629
            K PG S +E+   VH FLVGDK HPQ + IY+ L+E+   L+++G+VP+ + VL+D+DE
Sbjct: 529 VKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQEAGYVPNMASVLHDVDE 588

Query: 630 EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
           E KE  +  HSEKLA+A+G++++ PG+TI ++KNLRVCG+CH+  KLISKI +REII RD
Sbjct: 589 EEKEMIVRVHSEKLAVAFGVMNSIPGSTIHVIKNLRVCGDCHTVIKLISKIVSREIIVRD 648

Query: 690 RNRFHHFKDGNCSCNDYW 707
             RFHHFKDG CSC DYW
Sbjct: 649 AKRFHHFKDGLCSCGDYW 666



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 168/328 (51%), Gaps = 16/328 (4%)

Query: 34  LALLSKCTNMQN---IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           +++LS C+ + N    + VH   IK GL       + L++  A +  G++S +  VF+ +
Sbjct: 196 ISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLD--AYAKCGEVSLSRKVFDDM 253

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVP-NTYTFPFILKSCAKISAISEG 149
            E + V WN++I  ++ +     A + +  M+ +G    N  T   +L +CA   A+  G
Sbjct: 254 AEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVG 313

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
             +H  V+K+G  ++  + TS+I+MY + G+ E AR  F+    ++  S+TA+I GY   
Sbjct: 314 MCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMH 373

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNL 268
           G+  +A  +F +M        PN  T ++VL+AC+H G LE G  W  ++   + +   +
Sbjct: 374 GFAREALDVFYQMIW--AGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGV 431

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
                ++D+  + G + +A +L +S++ +RD + W  ++       D + A +  R++ +
Sbjct: 432 EHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFK 491

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKW 355
             ++P++  +  VL A  Y    D G+W
Sbjct: 492 --LDPSNCGYY-VLLANIY---ADAGRW 513



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 124/293 (42%), Gaps = 64/293 (21%)

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
            ++ DV SWN +I       D  E+L  F  M + +I+PN  TF   + +C+ L  L+ G
Sbjct: 42  FDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSG 101

Query: 354 KWIHAYIDKNHQKL-----NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI 408
           K  H       Q L     +++ + ++LIDMY+KCG +  A  +FD +  + + +W ++I
Sbjct: 102 KQAH------QQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLI 155

Query: 409 SGLAMHGKADKALSLFSRMIGE---------GLQPDDITFVGVLSACNHA---------- 449
           +G   +  A +AL +F   + E         G   D +  + VLSAC+            
Sbjct: 156 TGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVH 215

Query: 450 -------------------------GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484
                                    G + + R+ F+ M +   +S     +  M+ +  +
Sbjct: 216 GVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVS-----WNSMIAVYAQ 270

Query: 485 AGL----FDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL 533
            GL    F+    +LK    K +    ++LL AC   G L +G  +   ++++
Sbjct: 271 NGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKM 323


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 297/728 (40%), Positives = 418/728 (57%), Gaps = 92/728 (12%)

Query: 56  TGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAI 115
           TG     +A S+LI+     PF  + Y   +F  I   N  +WN +IR +  ++SP  A 
Sbjct: 4   TGFIRETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAF 63

Query: 116 KFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMY 175
             Y  M+ +    + YT+P ++++C+   +  E KQ+H HVLKLG +SD +V  +LIN +
Sbjct: 64  TLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCF 123

Query: 176 AQNGELESARLVFNKSSLRDAVSYTALITGYAS--------------------------- 208
           +    +  A  VFN+SS+ D+VS+ +++ GY                             
Sbjct: 124 SVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIV 183

Query: 209 ----RGYLDDARQLFDEM------------------PIREE---NFV--------PNEST 235
               RG + +A +LFDEM                   + EE    FV         +E  
Sbjct: 184 LFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVV 243

Query: 236 VVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFE--- 292
            V+ LSACA++  + +G  + SL    G  S +++ NALI MYSKCGD++ AR LF+   
Sbjct: 244 AVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAY 303

Query: 293 ----------------------------SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
                                       S+ ++DV+SW+ MI GY     + E L LF++
Sbjct: 304 LLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQE 363

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           M  S  +P++ T +SV+ ACA L AL+ GKW+HAYI +N   +N V L T+LIDMY KCG
Sbjct: 364 MQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTIN-VILGTTLIDMYMKCG 422

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
            ++ A +VF GM  K +++WNA+I GLAM+G  + +L +FS M    + P++ITF+GVL 
Sbjct: 423 CVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLG 482

Query: 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504
           AC H GL+D G+ +F +MI D+KI P ++HYGCMVDLLGRAG   EAE LL  M M PD 
Sbjct: 483 ACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDV 542

Query: 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564
           A W +LLGAC+ HG  E+G  V + L+EL+P++ G +VLLSN+YA  G+WDDV  IR  +
Sbjct: 543 ATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMM 602

Query: 565 NDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVL 624
               + K+PGCS IE   V+HEFL GDK HP    I +ML E+   L+  G+ PD +EVL
Sbjct: 603 TKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEVL 662

Query: 625 YDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNRE 684
            D+DEE KE  L  HSEKLAIA+GLI+  P T IRI+KNLR+C +CH+A KLISK F R+
Sbjct: 663 LDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKLISKAFCRK 722

Query: 685 IIARDRNR 692
           I+   R +
Sbjct: 723 IVFLFRGQ 730


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 285/675 (42%), Positives = 407/675 (60%), Gaps = 8/675 (1%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +++ CT  +NI   +QVH+ +++ G     F  + L+++      G +  A ++FE + +
Sbjct: 208 VVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDM--YMKMGRVDIASVIFEKMPD 265

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V WN +I G  L+     AI+  ++M  SG VPN +T   ILK+C+   A   G+QI
Sbjct: 266 SDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQI 325

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H  ++K   +SD ++   L++MYA+N  L+ AR VF+    RD +   ALI+G +  G  
Sbjct: 326 HGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRH 385

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           D+A  LF E+  R+E    N +T+  VL + A + +      V +L    G   + HV N
Sbjct: 386 DEALSLFYEL--RKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVN 443

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            LID Y KC  L  A  +FE     D+I+   MI   +     + A+ LF +ML+  +EP
Sbjct: 444 GLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEP 503

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           +     S+L ACA L A + GK +HA++ K  Q +++     +L+  YAKCG+I+ AE  
Sbjct: 504 DPFVLSSLLNACASLSAYEQGKQVHAHLIKR-QFMSDAFAGNALVYTYAKCGSIEDAELA 562

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F  +  + + SW+AMI GLA HG   +AL LF RM+ EG+ P+ IT   VL ACNHAGL+
Sbjct: 563 FSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLV 622

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           D  ++YFN+M + + I    +HY CM+DLLGRAG  D+A  L+ +M  + +A+IW +LLG
Sbjct: 623 DEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLG 682

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           A RVH   ELG+  A+ L  LEPE  G +VLL+N YA AG W++VA +R  + D  +KK 
Sbjct: 683 ASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKE 742

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
           P  S IEV   VH F+VGDK HP +K IY  L E+  L+ K+GFVP+    L+D+D   K
Sbjct: 743 PAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEK 802

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
           E  LSHHSE+LA+A+ L+ST PG  IR+ KNLR+C +CH A K ISKI +REII RD NR
Sbjct: 803 ELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINR 862

Query: 693 FHHFKDGNCSCNDYW 707
           FHHF+DG CSC DYW
Sbjct: 863 FHHFRDGTCSCGDYW 877



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 158/518 (30%), Positives = 243/518 (46%), Gaps = 41/518 (7%)

Query: 87  FETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAI 146
           F+ I +P  V W++++  +S +  P  AI+ +  M   G   N +  P +LK C   + +
Sbjct: 60  FDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLK-CVPDARL 118

Query: 147 SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKS-SLRDAVSYTALITG 205
             G Q+HA  +  G  SD FV  +L+ MY   G ++ AR VFN++ S R+AVS+  L++ 
Sbjct: 119 --GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSA 176

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           Y       DA Q+F EM        P E     V++AC    ++E G  V +++   G  
Sbjct: 177 YVKNDQCGDAIQVFGEMVW--SGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYD 234

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
            ++   NAL+DMY K G +  A  +FE +   DV+SWN +I G         A+ L  QM
Sbjct: 235 KDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM 294

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
             S + PN  T  S+L AC+  GA DLG+ IH ++ K +   ++  +   L+DMYAK   
Sbjct: 295 KYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDY-IGVGLVDMYAKNHF 353

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           +  A +VFD M ++ L   NA+ISG +  G+ D+ALSLF  +  EGL  +  T   VL +
Sbjct: 354 LDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKS 413

Query: 446 CN-----------HAGLLDIGRQY----FNAMIQDYKISPKLQHYGCMVDLLGRAGLF-- 488
                        HA  + IG  +     N +I  Y     L     + +      +   
Sbjct: 414 TASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIAC 473

Query: 489 ----------DEAEALLKT-MEM-----KPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
                     D  E  +K  MEM     +PD  + +SLL AC      E G+ V  HL++
Sbjct: 474 TSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIK 533

Query: 533 LE-PENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
            +   +  A   L   YA  G  +D     + L ++G+
Sbjct: 534 RQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGV 571



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 132/298 (44%), Gaps = 18/298 (6%)

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
           GS     N LI  YSKC     AR  F+ I     +SW+ ++  Y++    + A+  F  
Sbjct: 34  GSLASFRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHG 93

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           M    +  N+     VL     +    LG  +HA         ++V +  +L+ MY   G
Sbjct: 94  MRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAMATGFG-SDVFVANALVAMYGGFG 149

Query: 385 NIKAAEQVF-DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
            +  A +VF +    +   SWN ++S    + +   A+ +F  M+  G+QP +  F  V+
Sbjct: 150 FMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVV 209

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
           +AC  +  ++ GRQ  +AM+        +     +VD+  + G  D A  + + M   PD
Sbjct: 210 NACTGSRNIEAGRQ-VHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKM---PD 265

Query: 504 AAI--WTSLLGACRVHGRLELGESVAKHLLELEPEN--PGAYVLLSNMYA--GAGRWD 555
           + +  W +L+  C ++G         + LL+++     P  + L S + A  GAG +D
Sbjct: 266 SDVVSWNALISGCVLNGH---DHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFD 320


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 285/675 (42%), Positives = 407/675 (60%), Gaps = 8/675 (1%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +++ CT  +NI   +QVH+ +++ G     F  + L+++      G +  A ++FE + +
Sbjct: 208 VVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDM--YMKMGRVDIASVIFEKMPD 265

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V WN +I G  L+     AI+  ++M  SG VPN +T   ILK+C+   A   G+QI
Sbjct: 266 SDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQI 325

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H  ++K   +SD ++   L++MYA+N  L+ AR VF+    RD +   ALI+G +  G  
Sbjct: 326 HGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRH 385

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           D+A  LF E+  R+E    N +T+  VL + A + +      V +L    G   + HV N
Sbjct: 386 DEALSLFYEL--RKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVN 443

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            LID Y KC  L  A  +FE     D+I+   MI   +     + A+ LF +ML+  +EP
Sbjct: 444 GLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEP 503

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           +     S+L ACA L A + GK +HA++ K  Q +++     +L+  YAKCG+I+ AE  
Sbjct: 504 DPFVLSSLLNACASLSAYEQGKQVHAHLIKR-QFMSDAFAGNALVYTYAKCGSIEDAELA 562

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F  +  + + SW+AMI GLA HG   +AL LF RM+ EG+ P+ IT   VL ACNHAGL+
Sbjct: 563 FSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLV 622

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           D  ++YFN+M + + I    +HY CM+DLLGRAG  D+A  L+ +M  + +A+IW +LLG
Sbjct: 623 DEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLG 682

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           A RVH   ELG+  A+ L  LEPE  G +VLL+N YA AG W++VA +R  + D  +KK 
Sbjct: 683 ASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKE 742

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
           P  S IEV   VH F+VGDK HP +K IY  L E+  L+ K+GFVP+    L+D+D   K
Sbjct: 743 PAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEK 802

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
           E  LSHHSE+LA+A+ L+ST PG  IR+ KNLR+C +CH A K ISKI +REII RD NR
Sbjct: 803 ELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINR 862

Query: 693 FHHFKDGNCSCNDYW 707
           FHHF+DG CSC DYW
Sbjct: 863 FHHFRDGTCSCGDYW 877



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 160/522 (30%), Positives = 245/522 (46%), Gaps = 41/522 (7%)

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           A  VF+ I +P  V W++++  +S +  P  AI+ +  M   G   N +  P +LK C  
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLK-CVP 114

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKS-SLRDAVSYTA 201
            + +  G Q+HA  +  G  SD FV  +L+ MY   G ++ AR VFN++ S R+AVS+  
Sbjct: 115 DARL--GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNG 172

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
           L++ Y       DA Q+F EM        P E     V++AC    ++E G  V +++  
Sbjct: 173 LMSAYVKNDQCGDAIQVFGEMVW--SGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVR 230

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALML 321
            G   ++   NAL+DMY K G +  A  +FE +   DV+SWN +I G         A+ L
Sbjct: 231 MGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIEL 290

Query: 322 FRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381
             QM  S + PN  T  S+L AC+  GA DLG+ IH ++ K +   ++  +   L+DMYA
Sbjct: 291 LLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDY-IGVGLVDMYA 349

Query: 382 KCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVG 441
           K   +  A +VFD M ++ L   NA+ISG +  G+ D+ALSLF  +  EGL  +  T   
Sbjct: 350 KNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAA 409

Query: 442 VLSACN-----------HAGLLDIGRQY----FNAMIQDYKISPKLQHYGCMVDLLGRAG 486
           VL +             HA  + IG  +     N +I  Y     L     + +      
Sbjct: 410 VLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGD 469

Query: 487 LF------------DEAEALLKT-MEM-----KPDAAIWTSLLGACRVHGRLELGESVAK 528
           +             D  E  +K  MEM     +PD  + +SLL AC      E G+ V  
Sbjct: 470 IIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHA 529

Query: 529 HLLELE-PENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
           HL++ +   +  A   L   YA  G  +D     + L ++G+
Sbjct: 530 HLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGV 571



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 120/400 (30%), Positives = 191/400 (47%), Gaps = 14/400 (3%)

Query: 141 AKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYT 200
           A   A+  G  +HA +LK G  S       LI+ Y++      AR VF++      VS++
Sbjct: 15  AAAQALLPGAHLHASLLKSG--SLASFRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWS 72

Query: 201 ALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE 260
           +L+T Y++ G    A Q F  M  R E    NE  +  VL     +    LG  V ++  
Sbjct: 73  SLVTAYSNNGLPRSAIQAFHGM--RAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAM 127

Query: 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLF-ESIEKRDVISWNVMIGGYTHTSDYKEAL 319
             G GS++ V NAL+ MY   G +  AR +F E+  +R+ +SWN ++  Y       +A+
Sbjct: 128 ATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAI 187

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
            +F +M+ S I+P +  F  V+ AC     ++ G+ +HA + +      +V    +L+DM
Sbjct: 188 QVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYD-KDVFTANALVDM 246

Query: 380 YAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439
           Y K G +  A  +F+ M    + SWNA+ISG  ++G   +A+ L  +M   GL P+  T 
Sbjct: 247 YMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTL 306

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME 499
             +L AC+ AG  D+GRQ    MI+    S      G +VD+  +    D+A  +   M 
Sbjct: 307 SSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVG-LVDMYAKNHFLDDARKVFDWM- 364

Query: 500 MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG 539
              D  +  +L+  C   GR +   S+     EL  E  G
Sbjct: 365 FHRDLILCNALISGCSHGGRHDEALSL---FYELRKEGLG 401



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 133/298 (44%), Gaps = 18/298 (6%)

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
           GS     N LI  YSKC     AR +F+ I     +SW+ ++  Y++    + A+  F  
Sbjct: 34  GSLASFRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHG 93

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           M    +  N+     VL     +    LG  +HA         ++V +  +L+ MY   G
Sbjct: 94  MRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAMATGFG-SDVFVANALVAMYGGFG 149

Query: 385 NIKAAEQVF-DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
            +  A +VF +    +   SWN ++S    + +   A+ +F  M+  G+QP +  F  V+
Sbjct: 150 FMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVV 209

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
           +AC  +  ++ GRQ  +AM+        +     +VD+  + G  D A  + + M   PD
Sbjct: 210 NACTGSRNIEAGRQ-VHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKM---PD 265

Query: 504 AAI--WTSLLGACRVHGRLELGESVAKHLLELEPEN--PGAYVLLSNMYA--GAGRWD 555
           + +  W +L+  C ++G         + LL+++     P  + L S + A  GAG +D
Sbjct: 266 SDVVSWNALISGCVLNGH---DHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFD 320


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 285/684 (41%), Positives = 419/684 (61%), Gaps = 14/684 (2%)

Query: 32  PSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           P L L      +   + VH   IK GL    F    L+ I   S  G +  A L+F+ +R
Sbjct: 188 PVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNI--YSKCGRMRDARLLFDWMR 245

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSC--AKISAISEG 149
           E + V+WN +++G+        A + +     SG  P+ ++   IL  C  A    +  G
Sbjct: 246 ERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELG 305

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           KQ+H   +K GL+SD  V  SL+NMY++ G    AR VFN     D +S+ ++I+  A  
Sbjct: 306 KQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQS 365

Query: 210 GYLDDARQLFDEM---PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS 266
              +++  LF ++    ++ ++F     T+ T   AC  +  L+ G  + +     G  S
Sbjct: 366 SLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDS 425

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML 326
           +LHV + ++DMY KCGD+V A  +F  I   D ++W  MI G     +  +AL ++ +M 
Sbjct: 426 DLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMR 485

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS---LWTSLIDMYAKC 383
           QS + P++ TF +++ A + + AL+ G+ +HA    N  KL+ VS   + TSL+DMYAKC
Sbjct: 486 QSRVMPDEYTFATLIKASSCVTALEQGRQLHA----NVIKLDCVSDPFVGTSLVDMYAKC 541

Query: 384 GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
           GNI+ A ++F  M  + +A WNAM+ GLA HG A++A++LF  M   G++PD ++F+G+L
Sbjct: 542 GNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGIL 601

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
           SAC+HAGL     +Y ++M  DY I P+++HY C+VD LGRAGL  EA+ +++TM  K  
Sbjct: 602 SACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKAS 661

Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563
           A+I  +LLGACR+ G +E G+ VA  L  LEP +  AYVLLSN+YA A RWDDV   R  
Sbjct: 662 ASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKM 721

Query: 564 LNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEV 623
           +  K +KK PG S I+V +++H F+V D+ HPQ+  IY+ ++E+   + + G+VPDT  V
Sbjct: 722 MKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFV 781

Query: 624 LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNR 683
           L D+++E KE +L +HSEKLAIAYGLIST   TTIR++KNLRVCG+CH+A K ISK+F R
Sbjct: 782 LLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFER 841

Query: 684 EIIARDRNRFHHFKDGNCSCNDYW 707
           EI+ RD NRFHHF+DG CSC DYW
Sbjct: 842 EIVLRDANRFHHFRDGVCSCGDYW 865



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 155/513 (30%), Positives = 256/513 (49%), Gaps = 31/513 (6%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ 95
           LL KCT        H++I+ +G     F  + L+ +   S  G LS A  VF+T  E + 
Sbjct: 94  LLGKCT--------HARIVVSGSAGDHFLSNNLLTM--YSKCGSLSSARQVFDTTPERDL 143

Query: 96  VIWNNIIRGHSLS-----SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
           V WN I+  ++ S      +    +  +  +  S       T   +LK C     +   +
Sbjct: 144 VTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAE 203

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            +H + +K+GLE D FV  +L+N+Y++ G +  ARL+F+    RD V +  ++ GY   G
Sbjct: 204 GVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLG 263

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS--LELGNWVCSLIEGHGLGSNL 268
              +A QLF E         P+E +V  +L+ C   G+  LELG  V  +    GL S++
Sbjct: 264 LEKEAFQLFSE--FHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDV 321

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
            V N+L++MYSK G    AR++F  ++  D+ISWN MI     +S  +E++ LF  +L  
Sbjct: 322 SVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHE 381

Query: 329 NIEPNDVTFLSVL-----PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383
            ++P+  T  S+       AC  L  LD GK IHA+  K     +++ + + ++DMY KC
Sbjct: 382 GLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFD-SDLHVNSGILDMYIKC 440

Query: 384 GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
           G++  A  VF+ +      +W +MISG   +G  D+AL ++ RM    + PD+ TF  ++
Sbjct: 441 GDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLI 500

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
            A +    L+ GRQ    +I+   +S        +VD+  + G  ++A  L K M ++ +
Sbjct: 501 KASSCVTALEQGRQLHANVIKLDCVSDPFVGTS-LVDMYAKCGNIEDAYRLFKKMNVR-N 558

Query: 504 AAIWTSLLGACRVHGRLE----LGESVAKHLLE 532
            A+W ++L     HG  E    L +S+  H +E
Sbjct: 559 IALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIE 591


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 274/679 (40%), Positives = 418/679 (61%), Gaps = 14/679 (2%)

Query: 35  ALLSKCTNM---QNIKQVHSQIIKTGLHNTQFALSKLIEI---CAVSPFGDLSYALLVFE 88
           ++L  C+++   Q  + +H  ++K G     F ++ L+++   C      +  +  L F+
Sbjct: 167 SVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFD 226

Query: 89  TIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE 148
                N V+W  ++ G++ +     A++F+  M   G   N YTFP IL +C+ + A   
Sbjct: 227 ---RKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCF 283

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           G+Q+H  ++K G  S+ +V ++L++MYA+ G+L++A+ +       D VS+ +L+ G+  
Sbjct: 284 GEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVR 343

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
            G  ++A +LF  M  R  N   ++ T  +VL+ C  +GS+   + V  LI   G  +  
Sbjct: 344 HGLEEEALRLFKNMHGR--NMKIDDYTFPSVLNCCV-VGSINPKS-VHGLIIKTGFENYK 399

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
            V+NAL+DMY+K GD+  A  +FE + ++DVISW  ++ GY   + ++E+L +F  M  +
Sbjct: 400 LVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVT 459

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            + P+     S+L ACA L  L+ GK +H    K+  + +  S++ SL+ MYAKCG +  
Sbjct: 460 GVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQ-SVYNSLVAMYAKCGCLDD 518

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A+ +F  M  K + +W A+I G A +GK   +L  +  M+  G +PD ITF+G+L AC+H
Sbjct: 519 ADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSH 578

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
           AGL+D GR+YF  M + Y I P  +HY CM+DL GR+G  DEA+ LL  M++KPDA +W 
Sbjct: 579 AGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWK 638

Query: 509 SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568
           SLL ACRVH  LEL E  A +L ELEP N   YV+LSNMY+ + +W+DVA IR  +  KG
Sbjct: 639 SLLSACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKG 698

Query: 569 MKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
           + K PGCS +E+ S V+ F+  D+ HP+   IY  +DEI   ++++G+VPD S  L+DMD
Sbjct: 699 IVKEPGCSWLEINSRVNTFISDDRGHPREAEIYTKIDEIILRIKEAGYVPDMSFSLHDMD 758

Query: 629 EEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIAR 688
           +E KE  L++HSEKLA+A+GL++  P   IRI KNLRVCG+CHSA K IS++F R II R
Sbjct: 759 KEGKEVGLAYHSEKLAVAFGLLAAPPSAPIRIFKNLRVCGDCHSAMKYISRVFTRHIILR 818

Query: 689 DRNRFHHFKDGNCSCNDYW 707
           D N FHHF++G CSC DYW
Sbjct: 819 DSNCFHHFREGECSCGDYW 837



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 146/322 (45%), Gaps = 46/322 (14%)

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
           L+   +  G ++DAR+LFD+MP ++E                         +W       
Sbjct: 71  LLNQLSKSGQVNDARKLFDKMPQKDEY------------------------SW------- 99

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALML 321
                     N +I  Y   G LV+AR+LF+    +  I+W+ +I GY       EA  L
Sbjct: 100 ----------NTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDL 149

Query: 322 FRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381
           FR M     + +  T  SVL  C+ LG +  G+ IH ++ KN  +  NV + T L+DMYA
Sbjct: 150 FRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFE-GNVFVVTGLVDMYA 208

Query: 382 KCGNIKAAEQVFDGMGY--KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439
           KC  +  AE +F G+ +  K    W AM++G A +G   KA+  F  M  +G++ +  TF
Sbjct: 209 KCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTF 268

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME 499
             +L+AC+       G Q    +++       +     +VD+  + G    A+ +L+TME
Sbjct: 269 PTILTACSSVLARCFGEQVHGFIVKS-GFGSNVYVQSALVDMYAKCGDLKNAKNMLETME 327

Query: 500 MKPDAAIWTSLLGACRVHGRLE 521
              D   W SL+     HG  E
Sbjct: 328 -DDDVVSWNSLMVGFVRHGLEE 348


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 275/675 (40%), Positives = 416/675 (61%), Gaps = 7/675 (1%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L   +    ++  +QVH  I K G ++    ++ LI    V     +  A  +F+ + + 
Sbjct: 258 LKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGR--KVRCAQKLFDELTDR 315

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           + + WN++I G+  +      I+ +++M++ G   +  T   +  +CA I  +  GK +H
Sbjct: 316 DVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLH 375

Query: 154 AHVLKLG-LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           ++ +K   L+ +   + +L++MY++ G+L SA  VF +   +  VS+T++ITGY   G  
Sbjct: 376 SYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLS 435

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           D A +LFDEM  R    VP+   V ++L+ACA  G+L+ G  V   I  + L +N  V+N
Sbjct: 436 DGAIKLFDEMKSR--GVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSN 493

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           AL DMY+KCG +  A D+F  ++K+DVISWN MIGGYT  S   EAL LF +M Q   +P
Sbjct: 494 ALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEM-QRESKP 552

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           +  T   +LPACA L ALD G+ IH Y  +N    +   +  +++DMY KCG +  A  +
Sbjct: 553 DGTTVACILPACASLAALDKGREIHGYALRNGYSEDKY-VTNAVVDMYVKCGLLVLARSL 611

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           FD +  K L SW  MI+G  MHG   +A++ F++M   G++PD+++F+ +L AC+H+GLL
Sbjct: 612 FDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLL 671

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           D G + FN M ++ +I P L+HY CMVDLL R G   +A   +K M +KPDA IW +LL 
Sbjct: 672 DEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLC 731

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
            CR+H  ++L E VA+ + ELEPEN G YVLL+N+YA A +W++V  +R ++  +G+KK 
Sbjct: 732 GCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKN 791

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
           PGCS IE+   ++ F+ GD   PQ+K I  +L  + + +++ G+ P T+  L + DE  K
Sbjct: 792 PGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRSKMKEEGYSPKTAYALLNADEREK 851

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
           E AL  HSEKLA+A+G+++  PG TIR+ KNLRVCG+CH   K +SK  +REII RD +R
Sbjct: 852 EVALCGHSEKLAMAFGMLNLPPGKTIRVTKNLRVCGDCHEMAKFMSKSASREIILRDSSR 911

Query: 693 FHHFKDGNCSCNDYW 707
           FHHFKDG+CSC  YW
Sbjct: 912 FHHFKDGSCSCRGYW 926



 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 150/442 (33%), Positives = 236/442 (53%), Gaps = 7/442 (1%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           GDL    +VF+ + E    +WN +I  +S S +   +I  + +M+  G  PN+YTF  IL
Sbjct: 199 GDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSIL 258

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
           K  A ++ + EG+Q+H  + KLG  S   V  SLI+ Y    ++  A+ +F++ + RD +
Sbjct: 259 KCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVI 318

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           S+ ++I+GY   G  D   ++F +M +   +   + +T+V V  ACA++G+L LG  + S
Sbjct: 319 SWNSMISGYVKNGLDDRGIEIFIKMLVFGVDI--DLATMVNVFVACANIGTLLLGKVLHS 376

Query: 258 L-IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
             I+   L   +   N L+DMYSKCGDL  A  +FE ++++ V+SW  MI GY       
Sbjct: 377 YSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSD 436

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
            A+ LF +M    + P+     S+L ACA  G L  GK +H YI +N+ + N+  +  +L
Sbjct: 437 GAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSF-VSNAL 495

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
            DMYAKCG++K A  VF  M  K + SWN MI G   +   ++AL+LF+ M  E  +PD 
Sbjct: 496 TDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDG 554

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
            T   +L AC     LD GR+     +++     K      +VD+  + GL   A +L  
Sbjct: 555 TTVACILPACASLAALDKGREIHGYALRNGYSEDKYVT-NAVVDMYVKCGLLVLARSLFD 613

Query: 497 TMEMKPDAAIWTSLLGACRVHG 518
            +  K D   WT ++    +HG
Sbjct: 614 MIPNK-DLVSWTVMIAGYGMHG 634



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/382 (30%), Positives = 190/382 (49%), Gaps = 12/382 (3%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           IL+ CA+  +I +G+++ + +   G+  D  +   L+ MY + G+L+  R+VF+K S   
Sbjct: 156 ILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESK 215

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
              +  +I+ Y+  G   ++  LF +M   E    PN  T  ++L   A +  +E G  V
Sbjct: 216 IFLWNLMISEYSGSGNYGESINLFKQML--ELGIKPNSYTFSSILKCFAAVARVEEGRQV 273

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
             LI   G  S   V N+LI  Y     +  A+ LF+ +  RDVISWN MI GY      
Sbjct: 274 HGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLD 333

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
              + +F +ML   ++ +  T ++V  ACA +G L LGK +H+Y  K       V    +
Sbjct: 334 DRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNT 393

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           L+DMY+KCG++ +A +VF+ M  KT+ SW +MI+G    G +D A+ LF  M   G+ PD
Sbjct: 394 LLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPD 453

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQH----YGCMVDLLGRAGLFDEA 491
                 +L+AC   G L  G+     ++ DY     L+        + D+  + G   +A
Sbjct: 454 VYAVTSILNACAINGNLKSGK-----IVHDYIRENNLETNSFVSNALTDMYAKCGSMKDA 508

Query: 492 EALLKTMEMKPDAAIWTSLLGA 513
             +   M+ K D   W +++G 
Sbjct: 509 HDVFSHMK-KKDVISWNTMIGG 529



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 176/366 (48%), Gaps = 38/366 (10%)

Query: 238 TVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR 297
           ++L  CA   S+  G  V S+IE  G+  +  +   L+ MY KCGDL + R +F+ + + 
Sbjct: 155 SILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSES 214

Query: 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357
            +  WN+MI  Y+ + +Y E++ LF+QML+  I+PN  TF S+L   A +  ++ G+ +H
Sbjct: 215 KIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVH 274

Query: 358 AYIDK-NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGK 416
             I K      N V    SLI  Y     ++ A+++FD +  + + SWN+MISG   +G 
Sbjct: 275 GLICKLGFNSYNTVV--NSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGL 332

Query: 417 ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG 476
            D+ + +F +M+  G+  D  T V V  AC + G L +G+   +  I+   +  +++   
Sbjct: 333 DDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNN 392

Query: 477 CMVDLLGRAGLFDEAEALLKTM-----------------------------EMK-----P 502
            ++D+  + G  + A  + + M                             EMK     P
Sbjct: 393 TLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVP 452

Query: 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPE-NPGAYVLLSNMYAGAGRWDDVATIR 561
           D    TS+L AC ++G L+ G+ V  ++ E   E N      L++MYA  G   D   + 
Sbjct: 453 DVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVF 512

Query: 562 TRLNDK 567
           + +  K
Sbjct: 513 SHMKKK 518


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 278/678 (41%), Positives = 424/678 (62%), Gaps = 12/678 (1%)

Query: 34   LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
            LA ++   +++  KQVH   +K+GL +     + L+ +   S  G   +A  VF  ++  
Sbjct: 911  LAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNM--YSKMGCAYFAREVFNDMKHL 968

Query: 94   NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK-ISAISEGKQI 152
            + + WN++I   + SS    ++  ++ ++  G  P+ +T   +L++C+  I  ++  +QI
Sbjct: 969  DLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQI 1028

Query: 153  HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
            H H LK G  +D FV T+LI++Y+++G++E A  +F      D   + A++ GY      
Sbjct: 1029 HVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDG 1088

Query: 213  DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
              A +LF    I +     ++ T+ T   AC  +  L+ G  + +     G  S+LHV +
Sbjct: 1089 KKALELFS--LIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNS 1146

Query: 273  ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
             ++DMY KCGD+V A  +F  I   D ++W  MI G     +  +AL ++ +M QS + P
Sbjct: 1147 GILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMP 1206

Query: 333  NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS---LWTSLIDMYAKCGNIKAA 389
            ++ TF +++ A + + AL+ G+ +HA    N  KL+ VS   + TSL+DMYAKCGNI+ A
Sbjct: 1207 DEYTFATLIKASSCVTALEQGRQLHA----NVIKLDCVSDPFVGTSLVDMYAKCGNIEDA 1262

Query: 390  EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
             ++F  M  + +A WNAM+ GLA HG A++A++LF  M   G++PD ++F+G+LSAC+HA
Sbjct: 1263 YRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHA 1322

Query: 450  GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
            GL     +Y ++M  DY I P+++HY C+VD LGRAGL  EA+ +++TM  K  A+I  +
Sbjct: 1323 GLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRA 1382

Query: 510  LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
            LLGACR+ G +E G+ VA  L  LEP +  AYVLLSN+YA A RWDDV   R  +  K +
Sbjct: 1383 LLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNV 1442

Query: 570  KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE 629
            KK PG S I+V +++H F+V D+ HPQ+  IY+ ++E+   + + G+VPDT  VL D+++
Sbjct: 1443 KKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVED 1502

Query: 630  EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
            E KE +L +HSEKLAIAYGLIST   TTIR++KNLRVCG+CH+A K ISK+F REI+ RD
Sbjct: 1503 EEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRD 1562

Query: 690  RNRFHHFKDGNCSCNDYW 707
             NRFHHF+DG CSC DYW
Sbjct: 1563 ANRFHHFRDGVCSCGDYW 1580



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 142/502 (28%), Positives = 246/502 (49%), Gaps = 26/502 (5%)

Query: 48   QVHSQIIKTGLHNTQFALSKLIEICAVSPFGD--------LSYALLVFETIREPNQVIWN 99
            Q+ S+  ++GL   +F++  ++   +   + +         +YA  +  +   P+   WN
Sbjct: 814  QLFSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLSLSDDNPDVFCWN 873

Query: 100  NIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKL 159
              +     +     AI+ +V M       +  T   +L + A    +  GKQ+H   +K 
Sbjct: 874  KKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKS 933

Query: 160  GLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLF 219
            GL+SD  V  SL+NMY++ G    AR VFN     D +S+ ++I+  A     +++  LF
Sbjct: 934  GLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLF 993

Query: 220  DEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS----NLHVTNALI 275
              + +  E   P+  T+ +VL AC+   SL  G  +   I  H L +    +  V   LI
Sbjct: 994  --IDLLHEGLKPDHFTLASVLRACS---SLIDGLNISRQIHVHALKTGNIADSFVATTLI 1048

Query: 276  DMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV 335
            D+YSK G + +A  LF++ +  D+  WN M+ GY   +D K+AL LF  + +S  + + +
Sbjct: 1049 DVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQI 1108

Query: 336  TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
            T  +   AC  L  LD GK IHA+  K     +++ + + ++DMY KCG++  A  VF+ 
Sbjct: 1109 TLATAAKACGCLVLLDQGKQIHAHAIKAGFD-SDLHVNSGILDMYIKCGDMVNAGIVFNY 1167

Query: 396  MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
            +      +W +MISG   +G  D+AL ++ RM    + PD+ TF  ++ A +    L+ G
Sbjct: 1168 ISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQG 1227

Query: 456  RQ-YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
            RQ + N +  D    P +     +VD+  + G  ++A  L K M ++ + A+W ++L   
Sbjct: 1228 RQLHANVIKLDCVSDPFVG--TSLVDMYAKCGNIEDAYRLFKKMNVR-NIALWNAMLVGL 1284

Query: 515  RVHGRLE----LGESVAKHLLE 532
              HG  E    L +S+  H +E
Sbjct: 1285 AQHGNAEEAVNLFKSMKSHGIE 1306



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 135/482 (28%), Positives = 222/482 (46%), Gaps = 46/482 (9%)

Query: 36   LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ 95
            LL KCT        H++I+ +G     F  + L+ +   S  G LS A  VF+T  E + 
Sbjct: 638  LLGKCT--------HARIVVSGSAGDHFLSNNLLTM--YSKCGSLSSARQVFDTTPERDL 687

Query: 96   VIWNNIIRGHSLS-----SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            V WN I+  ++ S      +    +  +  +  S       T   +LK C     +   +
Sbjct: 688  VTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAE 747

Query: 151  QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
             +H + +K+GLE D FV  +L+N+Y++ G +  ARL+F+    RD V +  ++ GY   G
Sbjct: 748  GVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLG 807

Query: 211  YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
               +A QLF E         P+E +V  +L+  + +   E G W+   ++ +        
Sbjct: 808  LEKEAFQLFSE--FHRSGLRPDEFSVQLILNGVSEVNWDE-GKWLADQVQAY-------- 856

Query: 271  TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
                            A  L  S +  DV  WN  +       D   A+  F  M   NI
Sbjct: 857  ----------------AAKLSLSDDNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNI 900

Query: 331  EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
            + + VT L VL A A    L+LGK +H    K+    ++VS+  SL++MY+K G    A 
Sbjct: 901  DYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLD-SDVSVANSLVNMYSKMGCAYFAR 959

Query: 391  QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH-A 449
            +VF+ M +  L SWN+MIS  A     +++++LF  ++ EGL+PD  T   VL AC+   
Sbjct: 960  EVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLI 1019

Query: 450  GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
              L+I RQ     ++   I+        ++D+  ++G  +EAE L +  +   D A W +
Sbjct: 1020 DGLNISRQIHVHALKTGNIADSFV-ATTLIDVYSKSGKMEEAEFLFQNKD-DLDLACWNA 1077

Query: 510  LL 511
            ++
Sbjct: 1078 MM 1079



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 171/375 (45%), Gaps = 43/375 (11%)

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           GK  HA ++  G   D F+  +L+ MY++ G L SAR VF+ +  RD V++ A++  YA+
Sbjct: 640 GKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAA 699

Query: 209 R-----GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH- 262
                 G   +   LF    +R         T+  VL  C + G L    W    + G+ 
Sbjct: 700 SVDSNDGNAQEGLHLF--RLLRASLGSTTRMTLAPVLKLCLNSGCL----WAAEGVHGYA 753

Query: 263 ---GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEAL 319
              GL  ++ V+ AL+++YSKCG +  AR LF+ + +RDV+ WN+M+ GY      KEA 
Sbjct: 754 IKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAF 813

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
            LF +  +S + P++ +   +L   + +   D GKW+   +     KL   SL     D+
Sbjct: 814 QLFSEFHRSGLRPDEFSVQLILNGVSEVN-WDEGKWLADQVQAYAAKL---SLSDDNPDV 869

Query: 380 YAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439
           +  C N K +E ++ G       +W               A+  F  M G  +  D +T 
Sbjct: 870 F--CWNKKLSECLWAG------DNWG--------------AIECFVNMNGLNIDYDAVTL 907

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME 499
           + VL+A      L++G+Q     ++   +   +     +V++  + G    A  +   M+
Sbjct: 908 LVVLAAVAGTDDLELGKQVHGIAVKS-GLDSDVSVANSLVNMYSKMGCAYFAREVFNDMK 966

Query: 500 MKPDAAIWTSLLGAC 514
              D   W S++ +C
Sbjct: 967 -HLDLISWNSMISSC 980


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 276/663 (41%), Positives = 412/663 (62%), Gaps = 11/663 (1%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSL 107
           ++ S  ++ G+   +F  S +I    +  FG +  A  VF+ +   + V WN+II G+  
Sbjct: 151 EIISSAVEKGMEKNRFVGSSMISF--LVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQ 208

Query: 108 SSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFV 167
           +    VA + +  M  SG  P+  T   ++++C  I  +  GK +H +VL LGL +D  V
Sbjct: 209 AGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILV 268

Query: 168 HTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREE 227
            TS ++MY++ G++ESAR VF K   R+ VS+ A+I+G    G + ++  LF  +     
Sbjct: 269 LTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSG 328

Query: 228 NFVPNESTVVTVLSACAHMGSLELGNWV--CSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
            F  + +T+V++L  C+   SL  G  +  C++       SNL ++ A++D+YSKCG L 
Sbjct: 329 GF--DLTTIVSLLQGCSQTASLATGKILHGCAI---RSFESNLILSTAIVDLYSKCGSLK 383

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
           +A  +F  ++ R+VI+W  M+ G       ++AL LF QM +  I  N VTF+S++ +CA
Sbjct: 384 QATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCA 443

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD-GMGYKTLASW 404
           +LG+L  G+ IH ++ +     + V++ T+L+DMYAKCG I  AE++F  G   K +  W
Sbjct: 444 HLGSLKRGRSIHGHLFRLGFAFDIVNM-TALVDMYAKCGKINLAERIFSHGSISKDVVLW 502

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
           N+MI+G  MHG   +A+ ++ +MI EGL+P+  TF+ +LSAC+H+ L++ G   FN+M +
Sbjct: 503 NSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMER 562

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGE 524
           D+ I P  +HY C+VDLL RAG F+EA+AL++ M  +P  A+  +LL  CR H  + LG 
Sbjct: 563 DHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGI 622

Query: 525 SVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVV 584
             +  LL L+  NPG Y++LSN+YA A RWD V  IR  + ++G+KK PG S +E G+ V
Sbjct: 623 QTSDKLLALDAMNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWV 682

Query: 585 HEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLA 644
           H F  GD  HP  + IY  L+ + + +E SG+VPDTS VL D+DEE K   L  HSE+LA
Sbjct: 683 HTFFAGDNSHPNWEEIYHFLESLRSAVETSGYVPDTSCVLRDVDEEMKVRMLWGHSERLA 742

Query: 645 IAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCN 704
           IA+GL++T  G+ IRI KNLRVCG+CH+ TK ISKI  REII RD NRFHHF +G CSC 
Sbjct: 743 IAFGLLTTPAGSLIRITKNLRVCGDCHTVTKYISKIVKREIIVRDANRFHHFSNGECSCG 802

Query: 705 DYW 707
           DYW
Sbjct: 803 DYW 805



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 184/657 (28%), Positives = 320/657 (48%), Gaps = 59/657 (8%)

Query: 12  PSILHF----PPSSDPPYKLLQ-NQ-PS-----LALLSKCT-NMQNIKQVHSQIIKTGLH 59
           PS  HF    P S+  P K  Q NQ P+     L+LL + + N+  +K  H+QII   L 
Sbjct: 2   PSPFHFIANKPFSTCNPLKDGQFNQLPTIIHNFLSLLRESSKNLIWVKSTHAQIITNSLS 61

Query: 60  NTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYV 119
             QF  +KL++  A S    L  A  VF+   +P  ++ N ++ G+  S      ++ + 
Sbjct: 62  TDQFVATKLVK--AYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFG 119

Query: 120 RMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNG 179
            M       ++ +  F LK+CA       G +I +  ++ G+E + FV +S+I+   + G
Sbjct: 120 LMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFG 179

Query: 180 ELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTV 239
           ++  A+ VF+    +D V + ++I GY   G  D A QLF EM        P+  T+ ++
Sbjct: 180 KIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEM--HGSGIKPSPITMTSL 237

Query: 240 LSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV 299
           + AC  +G+L+LG  +   + G GLG+++ V  + +DMYSK GD+  AR +F  +  R++
Sbjct: 238 IQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNL 297

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
           +SWN MI G        E+  LF ++++S+   +  T +S+L  C+   +L  GK +H  
Sbjct: 298 VSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGC 357

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADK 419
             ++ +  +N+ L T+++D+Y+KCG++K A  VF+ M  + + +W AM+ GLA +G A+ 
Sbjct: 358 AIRSFE--SNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAED 415

Query: 420 ALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479
           AL LF++M  EG+  + +TFV ++ +C H G L  GR     + +    +  + +   +V
Sbjct: 416 ALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFR-LGFAFDIVNMTALV 474

Query: 480 DLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE--LEPEN 537
           D+  + G  + AE +     +  D  +W S++    +HG       +   ++E  L+P  
Sbjct: 475 DMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQ 534

Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQS 597
                LLS            A   +RL ++G+            S+ +       + P  
Sbjct: 535 TTFLSLLS------------ACSHSRLVEQGI------------SLFNSMERDHNIRPIE 570

Query: 598 KHIYEMLD---------EIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAI 645
           KH   ++D         E  AL+EK  F P T+ +     E    G  +H +  L I
Sbjct: 571 KHYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVL-----EALLSGCRTHKNINLGI 622


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 272/675 (40%), Positives = 411/675 (60%), Gaps = 9/675 (1%)

Query: 36  LLSKC---TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LL  C    +++  K++H Q+I        FA++ ++ + A     D +Y +  F+ + E
Sbjct: 153 LLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKM--FDRMPE 210

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V WN II G S +     A++  +RM   G  P++ T   +L + A +  +  GK I
Sbjct: 211 RDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSI 270

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H + ++ G      + T+L +MY++ G +E+ARL+F+    +  VS+ +++ GY   G  
Sbjct: 271 HGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEP 330

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           + A  +F++M   EE   P   T++  L ACA +G LE G +V   ++   LGS++ V N
Sbjct: 331 EKAIAVFEKM--LEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMN 388

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           +LI MYSKC  +  A D+F ++  R  +SWN MI GY       EAL  F +M    ++P
Sbjct: 389 SLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKP 448

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           +  T +SV+PA A L      KWIH  I ++     N+ + T+L+DMY+KCG I  A ++
Sbjct: 449 DSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLD-KNIFVTTALVDMYSKCGAIHMARKL 507

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           FD +  + + +WNAMI G   HG    AL LF +M    ++P+DIT++ V+SAC+H+GL+
Sbjct: 508 FDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLV 567

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           D G ++F +M QDY + P + HYG MVDLLGRAG   EA   ++ M + P   ++ ++LG
Sbjct: 568 DEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLG 627

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           AC++H  +E+GE  AK L EL P+  G +VLL+N+YA   +W  VA +R  +  KG+KK 
Sbjct: 628 ACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKT 687

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
           PGCS +E+ + VH F  G   HPQSK IY  L+E+   ++ +G+VPDT+ +L D++++ +
Sbjct: 688 PGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLIL-DVEDDVQ 746

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
           E  L+ HSEKLAIA+GL++T PGTTI + KNLRVCG+CH+ATK IS +  REII RD  R
Sbjct: 747 EQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQR 806

Query: 693 FHHFKDGNCSCNDYW 707
           FHHFK+G CSC DYW
Sbjct: 807 FHHFKNGICSCGDYW 821



 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 174/572 (30%), Positives = 296/572 (51%), Gaps = 60/572 (10%)

Query: 31  QPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
            P+  LL  CT+M+ + Q+   +IK GL+N     +KL+ +   S +G ++ A  VFE I
Sbjct: 50  HPAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSL--FSKYGSINEAARVFEPI 107

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            +    +++ +++G++ +SS   A+ F  RM      P  Y F ++LK C   + +  GK
Sbjct: 108 DDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGK 167

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           +IH  ++     ++ F  T ++NMYA+  +++ A  +F++   RD VS+  +I G++  G
Sbjct: 168 EIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNG 227

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
           +   A +L   M  ++E   P+  T+VTVL A A +G L +G  +       G    +++
Sbjct: 228 FAKKALELVLRM--QDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNI 285

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
           + AL DMYSKCG +  AR +F+ ++++ V+SWN M+ GY    + ++A+ +F +ML+  I
Sbjct: 286 STALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGI 345

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           +P  VT +  L ACA LG L+ GK++H ++D+ +   +++S+  SLI MY+KC  +  A 
Sbjct: 346 DPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLG-SDISVMNSLISMYSKCKRVDIAS 404

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV------LS 444
            +F+ +  +T  SWNAMI G A +G+  +AL+ FS M   G++PD  T V V      LS
Sbjct: 405 DIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELS 464

Query: 445 ACNHA-----------------------------GLLDIGRQYFNAMIQDYKISPKLQHY 475
              HA                             G + + R+ F+ MI D  +      +
Sbjct: 465 VTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFD-MISDRHVIT----W 519

Query: 476 GCMVDLLGRAGLFDEAEALLKTME---MKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
             M+D  G  GL   A  L   M+   ++P+   + S++ AC   G ++ G    K + +
Sbjct: 520 NAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQ 579

Query: 533 ---LEP--ENPGAYVLLSNMYAGAGR----WD 555
              LEP  ++ GA V   ++   AGR    WD
Sbjct: 580 DYGLEPSMDHYGAMV---DLLGRAGRIKEAWD 608


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 284/675 (42%), Positives = 414/675 (61%), Gaps = 8/675 (1%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +++ CT  +++   ++VH+ +I+TG     F  + L+++   S  GD+  A +VF  + E
Sbjct: 208 VVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDM--YSKLGDIRMAAVVFGKVPE 265

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V WN  I G  L      A++  ++M  SG VPN +T   ILK+CA   A + G+QI
Sbjct: 266 TDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQI 325

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H  ++K   +SD ++   L++MYA++G L+ A+ VF+    RD V + ALI+G +     
Sbjct: 326 HGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQH 385

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
            +A  LF  M  R+E F  N +T+  VL + A + ++     V +L E  G  S+ HV N
Sbjct: 386 AEALSLFCRM--RKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVN 443

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            LID Y KC  L  A  +FE     D+I++  MI   +     ++A+ LF +ML+  ++P
Sbjct: 444 GLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDP 503

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           +     S+L ACA L A + GK +HA++ K  Q +++V    +L+  YAKCG+I+ A+  
Sbjct: 504 DPFVLSSLLNACASLSAYEQGKQVHAHLIKR-QFMSDVFAGNALVYTYAKCGSIEDADLA 562

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F G+  K + SW+AMI GLA HG   +AL +F RM+ E + P+ IT   VL ACNHAGL+
Sbjct: 563 FSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLV 622

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           D  ++YFN+M + + I    +HY CM+DLLGRAG  D+A  L+ +M  + +AA+W +LL 
Sbjct: 623 DEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLA 682

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           A RVH   ELG   A+ L  LEPE  G +VLL+N YA AG WDDVA +R  + D  +KK 
Sbjct: 683 ASRVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKE 742

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
           P  S +E+   VH F+VGDK HP+++ IY  LDE+  L+ K+G+VP+    L+D+D+  K
Sbjct: 743 PAMSWVELKDKVHTFIVGDKSHPRARDIYAKLDELGDLMTKAGYVPNVEVDLHDVDKNEK 802

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
           E  LSHHSE+LA+A+ LIST  G  IR+ KNLR+C +CH+A K IS I +REII RD NR
Sbjct: 803 ELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHAAFKFISDIVSREIIIRDINR 862

Query: 693 FHHFKDGNCSCNDYW 707
           FHHF+DG CSC DYW
Sbjct: 863 FHHFRDGACSCRDYW 877



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 169/572 (29%), Positives = 265/572 (46%), Gaps = 48/572 (8%)

Query: 36  LLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LL++    Q++ Q   +H+ ++K+GL    FA+ +   +   S       A  VF+ I +
Sbjct: 10  LLTRYAATQSLLQGAHIHAHLLKSGL----FAVFRNHLLSFYSKCRLPGSARRVFDEIPD 65

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
           P  V W++++  +S ++ P  A+  +  M       N +  P +LK CA  +    G Q+
Sbjct: 66  PCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLK-CAPDAGF--GTQL 122

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL-RDAVSYTALITGYASRGY 211
           HA  +  GL  D FV  +L+ MY   G ++ AR+VF+++   R+ VS+  L++ Y     
Sbjct: 123 HALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDR 182

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
              A ++F EM        PNE     V++AC     LE G  V +++   G   ++   
Sbjct: 183 CSHAVKVFGEMVW--GGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTA 240

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           NAL+DMYSK GD+  A  +F  + + DV+SWN  I G       + AL L  QM  S + 
Sbjct: 241 NALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLV 300

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           PN  T  S+L ACA  GA +LG+ IH ++ K +   +N  +   L+DMYAK G +  A++
Sbjct: 301 PNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNY-IAFGLVDMYAKHGLLDDAKK 359

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VFD +  + L  WNA+ISG +   +  +ALSLF RM  EG   +  T   VL +      
Sbjct: 360 VFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEA 419

Query: 452 LDIGRQ---------------YFNAMIQDYKISPKLQH---------------YGCMVDL 481
           +   RQ                 N +I  Y     L +               +  M+  
Sbjct: 420 ISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITA 479

Query: 482 LGRAGLFDEAEALLKTMEMK---PDAAIWTSLLGACRVHGRLELGESVAKHLLELE-PEN 537
           L +    ++A  L   M  K   PD  + +SLL AC      E G+ V  HL++ +   +
Sbjct: 480 LSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSD 539

Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
             A   L   YA  G  +D     + L +KG+
Sbjct: 540 VFAGNALVYTYAKCGSIEDADLAFSGLPEKGV 571



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 155/369 (42%), Gaps = 36/369 (9%)

Query: 259 IEGHGLGSNLHVT--NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
           I  H L S L     N L+  YSKC     AR +F+ I     +SW+ ++  Y++ +  +
Sbjct: 26  IHAHLLKSGLFAVFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNNAMPR 85

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           +AL  FR M   ++  N+     VL      G    G  +HA          ++ +  +L
Sbjct: 86  DALGAFRSMRSCSVRCNEFVLPVVLKCAPDAG---FGTQLHALAMATGLG-GDIFVANAL 141

Query: 377 IDMYAKCGNIKAAEQVFDGMG-YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           + MY   G +  A  VFD  G  +   SWN ++S    + +   A+ +F  M+  G+QP+
Sbjct: 142 VAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPN 201

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
           +  F  V++AC  +  L+ GR+  +AM+        +     +VD+  + G    A  + 
Sbjct: 202 EFGFSCVVNACTGSRDLEAGRK-VHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVF 260

Query: 496 KTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555
             +  + D   W + +  C +HG         +H LE          LL  M + +G   
Sbjct: 261 GKVP-ETDVVSWNAFISGCVLHGH-------DQHALE----------LLLQMKS-SGLVP 301

Query: 556 DVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSG 615
           +V T+ + L     K   G  +  +G  +H F+V       +   + ++D    +  K G
Sbjct: 302 NVFTLSSIL-----KACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVD----MYAKHG 352

Query: 616 FVPDTSEVL 624
            + D  +V 
Sbjct: 353 LLDDAKKVF 361


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 288/620 (46%), Positives = 376/620 (60%), Gaps = 82/620 (13%)

Query: 97  IWNNIIRGHSLSSSPVVA-----IKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           +WN +IR H  + +         I  +VRM   G  P+ +TFPF+L+S A  S +  G+ 
Sbjct: 26  LWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRS 85

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +HA +L+ GL  DPFV TSLI+M                               Y+S G 
Sbjct: 86  VHAQILRFGLAIDPFVQTSLISM-------------------------------YSSCGN 114

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
           L  ARQ+FDE        +P                  +L +W                 
Sbjct: 115 LGFARQVFDE--------IPQP----------------DLPSW----------------- 133

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFR--QMLQSN 329
           N++I+   + G +  AR+LF  + +R+VISW+ MI GY     YKEAL LFR  QML  N
Sbjct: 134 NSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVN 193

Query: 330 -IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            + PN+ T   VL AC  LGAL+ GKW HAYIDK    ++ V L T+LIDMYAKCG+++ 
Sbjct: 194 DVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVD-VVLGTALIDMYAKCGSVEK 252

Query: 389 AEQVFDGMG-YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
           A  VF  +G  K + +W+AMISGLAMHG A++ + LFS+MI +G++P+ +TF+ V  AC 
Sbjct: 253 ATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACV 312

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
           H GL+  G+ Y   M +DY I P +QHYGCMVDL GRAG   EA  ++K+M M+PD  +W
Sbjct: 313 HGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVW 372

Query: 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
            +LL   R+HG +E  E   K L+ELEP N GAYVLLSN+YA  GRW+DV  +R  +   
Sbjct: 373 GALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETM 432

Query: 568 GMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
           G+KKVPGCS IEVG V+HEF VGD  HP+++ I+ ML+EI   L+  G+V +T EVL D+
Sbjct: 433 GIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDL 492

Query: 628 DEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIA 687
           DEE KE ALS HSEKLA+AYG + T PGT IRIVKNLR+C +CH A K+ISK+F+REII 
Sbjct: 493 DEEGKELALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIV 552

Query: 688 RDRNRFHHFKDGNCSCNDYW 707
           RD NRFHHF  G CSC DYW
Sbjct: 553 RDCNRFHHFTQGLCSCRDYW 572



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 158/325 (48%), Gaps = 43/325 (13%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           + VH+QI++ GL    F  + LI +   S  G+L +A  VF+ I +P+   WN+II  + 
Sbjct: 84  RSVHAQILRFGLAIDPFVQTSLISM--YSSCGNLGFARQVFDEIPQPDLPSWNSIINANF 141

Query: 107 LSSSPVVAIKFYVRM----------ILSGFV------------------------PNTYT 132
            +    +A   +  M          +++G+V                        PN +T
Sbjct: 142 QAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFT 201

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF-NKS 191
              +L +C ++ A+  GK  HA++ K G+  D  + T+LI+MYA+ G +E A  VF N  
Sbjct: 202 MSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLG 261

Query: 192 SLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL 251
             +D ++++A+I+G A  G  ++   LF +M    +   PN  T + V  AC H G +  
Sbjct: 262 PNKDVMAWSAMISGLAMHGLAEECVGLFSKM--INQGVRPNAVTFLAVFCACVHGGLVSE 319

Query: 252 G-NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGY 309
           G +++  + E + +   +     ++D+Y + G + +A ++ +S+  + DV+ W  ++ G 
Sbjct: 320 GKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGS 379

Query: 310 THTSDYKEALMLFRQMLQSNIEPND 334
               D +   +  +++++  +EP +
Sbjct: 380 RMHGDIETCELALKKLIE--LEPTN 402


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 278/684 (40%), Positives = 415/684 (60%), Gaps = 65/684 (9%)

Query: 31  QPSLAL---LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVF 87
           QP L L    + C   +++KQ+H+  IKTG        +++I+ CA S   D+ YA  VF
Sbjct: 17  QPPLILSKPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSS-RDIDYARAVF 75

Query: 88  ETIREPNQVIWNNIIRGHSLSSSPVV---AIKFYVRMILSGFV-PNTYTFPFILKSCAKI 143
             + EPN   WN I+R  + ++   +   A+  +  M+  G V PN +TFP +LK+CA+ 
Sbjct: 76  RQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARA 135

Query: 144 SAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALI 203
           S + EGKQIH  ++K G   D FV ++L+ M                             
Sbjct: 136 SRLREGKQIHGLIVKFGFHEDEFVISNLVRM----------------------------- 166

Query: 204 TGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG 263
             Y     ++DA  LF +              VV    +C     +EL        +   
Sbjct: 167 --YVMCAVMEDAYSLFCK-------------NVVDFDGSC----QMEL--------DKRK 199

Query: 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFR 323
              N+ + N +ID   + GD+  A++LF+ + +R V+SWNVMI GY     + EA+ LF+
Sbjct: 200 QDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQ 259

Query: 324 QMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383
           +M  SNI+PN VT +SVLPA A +GAL+LGKWIH Y  KN  ++++V L ++L+DMY+KC
Sbjct: 260 EMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDV-LGSALVDMYSKC 318

Query: 384 GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
           G+I  A QVF+ +  +   +W+A+I   AMHG+A+ A+  F  M   G+ P+D+ ++G+L
Sbjct: 319 GSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGIL 378

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
           SAC+HAGL++ GR +F+ M++   + P+++HYGCMVDLLGRAG  +EAE L++ M ++PD
Sbjct: 379 SACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPD 438

Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563
             IW +LLGAC++H  L++GE VA+ L+EL P + G+YV LSN+YA  G W+ VA +R +
Sbjct: 439 DVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLK 498

Query: 564 LNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEV 623
           +    ++K PGCS IE+  ++HEFLV D  H ++K I  ML E+   L  +G+ P+T EV
Sbjct: 499 MKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLEV 558

Query: 624 LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNR 683
             + DE+ +  AL +HSEK+A+A+GLIST P   ++IVKNLR+C +CH++ KLIS I+ R
Sbjct: 559 FLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKR 618

Query: 684 EIIARDRNRFHHFKDGNCSCNDYW 707
           +II RDR RFH F+ G+CSC DYW
Sbjct: 619 QIIVRDRKRFHQFEHGSCSCMDYW 642


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 276/589 (46%), Positives = 378/589 (64%), Gaps = 40/589 (6%)

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           QIHA +L+ GL  +P ++  L   YA  G L+ +  VFN     +  S++A+I  +    
Sbjct: 65  QIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSR 124

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV-CSLIEGHGLGSNLH 269
             D A   + +M        PN  T  +VL +C    SLE G  + C  I+  GLGS+L+
Sbjct: 125 LFDRAFGYYSQML--SCGVEPNAFTFSSVLKSC----SLESGKVLHCQAIK-LGLGSDLY 177

Query: 270 VTNALIDMYSKCGDLV-------------------------------KARDLFESIEKRD 298
           V   L+D+Y++ GD+V                               KAR LFE +++RD
Sbjct: 178 VRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERD 237

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
           V+ WNVMIGGY  +    E+L LFR+ML +   PN+VT L+VL AC  LGAL+ G+WIH+
Sbjct: 238 VVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHS 297

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKAD 418
           YI+    ++N V + T+LIDMY+KCG+++ A  VFD +  K + +WN+MI G AMHG + 
Sbjct: 298 YIENKGIQIN-VHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQ 356

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478
            AL LF  M   G +P DITF+G+LSAC H GL++ GR +F  M   Y I PK++HYGCM
Sbjct: 357 HALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCM 416

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
           V+LLGRAG  +EA  L+K M +  D  +W +LLG CR+H  ++LGE +AK L++ +  N 
Sbjct: 417 VNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLANS 476

Query: 539 GAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSK 598
           G YVLLSNMYA  G W+ VA +RT + + G++K  GCSSIEV + VHEF+ G++ HP+SK
Sbjct: 477 GTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERKHPKSK 536

Query: 599 HIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTI 658
            IY ML+EI++ L+  G+ P T  VL+D+ EE KE +L  HSEKLAIA+GLISTKPGTT+
Sbjct: 537 EIYVMLNEINSWLKARGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFGLISTKPGTTV 596

Query: 659 RIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +IVKNLRVC +CH+  K+IS+I  R+I+ RDRNRFHHF+DG CSC DYW
Sbjct: 597 KIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 645



 Score =  228 bits (581), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 132/413 (31%), Positives = 216/413 (52%), Gaps = 42/413 (10%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           +L+ K  ++ ++ Q+H+ +++ GL++      KL    + +  G L  ++ VF T  EPN
Sbjct: 52  SLIDKSKSVAHLLQIHASLLRRGLYHNPILNFKLQR--SYAALGRLDCSVFVFNTFDEPN 109

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
              ++ II  H  S     A  +Y +M+  G  PN +TF  +LKSC+    +  GK +H 
Sbjct: 110 VFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESGKVLHC 165

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
             +KLGL SD +V T L+++YA+ G++  AR +F+K   R  VS T ++T Y+  G LD 
Sbjct: 166 QAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDK 225

Query: 215 ARQLFDEMPIRE-----------------------------ENFVPNESTVVTVLSACAH 245
           AR LF+ M  R+                                +PNE TV+ VLSAC  
Sbjct: 226 ARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQ 285

Query: 246 MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVM 305
           +G+LE G W+ S IE  G+  N+HV  ALIDMYSKCG L  AR +F+ I  +DV++WN M
Sbjct: 286 LGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSM 345

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365
           I GY      + AL LF +M ++  +P D+TF+ +L AC + G ++ G+     +   + 
Sbjct: 346 IVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYG 405

Query: 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS----WNAMISGLAMH 414
               +  +  ++++  + G+++ A  +   M   T+A+    W  ++    +H
Sbjct: 406 IEPKIEHYGCMVNLLGRAGHLEEAYGLVKNM---TIAADPVLWGTLLGCCRLH 455


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 274/677 (40%), Positives = 401/677 (59%), Gaps = 75/677 (11%)

Query: 33  SLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGD-LSYALLVFETIR 91
           +++ L +C+  + +KQ+H++++KTGL    +A++K +  C  S   D L YA +VF+   
Sbjct: 17  TMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFD 76

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
            P+  +WN +IRG S S  P  ++  Y RM+ S    N YTFP +LK+C+ +SA  E  Q
Sbjct: 77  RPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQ 136

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IHA + KLG E+D         +YA N                      +LI  YA  G 
Sbjct: 137 IHAQITKLGYEND---------VYAVN----------------------SLINSYAVTGN 165

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
              A  LFD +P       P++ +                  W                 
Sbjct: 166 FKLAHLLFDRIP------EPDDVS------------------W----------------- 184

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N++I  Y K G +  A  LF  + +++ ISW  MI GY      KEAL LF +M  S++E
Sbjct: 185 NSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVE 244

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P++V+  + L ACA LGAL+ GKWIH+Y++K   ++++V L   LIDMYAKCG ++ A +
Sbjct: 245 PDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSV-LGCVLIDMYAKCGEMEEALE 303

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VF  +  K++ +W A+ISG A HG   +A+S F  M   G++P+ ITF  VL+AC++ GL
Sbjct: 304 VFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGL 363

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           ++ G+  F +M +DY + P ++HYGC+VDLLGRAGL DEA+  ++ M +KP+A IW +LL
Sbjct: 364 VEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALL 423

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
            ACR+H  +ELGE + + L+ ++P + G YV  +N++A   +WD  A  R  + ++G+ K
Sbjct: 424 KACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAK 483

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM-DEE 630
           VPGCS+I +    HEFL GD+ HP+ + I      +   LE++G+VP+  E+L D+ D++
Sbjct: 484 VPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDD 543

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            +E  +  HSEKLAI YGLI TKPGT IRI+KNLRVC +CH  TKLISKI+ R+I+ RDR
Sbjct: 544 EREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDR 603

Query: 691 NRFHHFKDGNCSCNDYW 707
            RFHHF+DG CSC DYW
Sbjct: 604 TRFHHFRDGKCSCGDYW 620


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 272/673 (40%), Positives = 420/673 (62%), Gaps = 6/673 (0%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           +L+   T+ +++ Q+H++++ +GL +  F ++KL+     S  G + YA  +F+    P+
Sbjct: 61  SLIDNSTHKRHLDQIHNRLVISGLQHNGFLMTKLVN--GSSNLGQICYARKLFDEFCYPD 118

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
             +WN IIR +S ++     ++ Y  M  +G  P+ +TFP++LK+C ++        IH 
Sbjct: 119 VFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHG 178

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
            ++K G  SD FV   L+ +YA+ G +  A++VF+    R  VS+T++I+GYA  G   +
Sbjct: 179 QIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVE 238

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274
           A ++F +M  R     P+   +V++L A   +  LE G  +   +   GL     +  +L
Sbjct: 239 ALRMFSQM--RNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISL 296

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
              Y+KCG +  A+  F+ ++  +VI WN MI GY      +EA+ LF  M+  NI+P+ 
Sbjct: 297 TAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDS 356

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           VT  S + A A +G+L+L +W+  Y+ K++   +++ + TSLIDMYAKCG+++ A +VFD
Sbjct: 357 VTVRSAVLASAQVGSLELAQWMDDYVSKSNYG-SDIFVNTSLIDMYAKCGSVEFARRVFD 415

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
               K +  W+AMI G  +HG+  +A++L+  M   G+ P+D+TF+G+L+ACNH+GL+  
Sbjct: 416 RNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKE 475

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
           G + F+ M +D++I P+ +HY C+VDLLGRAG   EA A +  + ++P  ++W +LL AC
Sbjct: 476 GWELFHCM-KDFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSAC 534

Query: 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPG 574
           +++  + LGE  A  L  L+P N G YV LSN+YA +  WD VA +R  + +KG+ K  G
Sbjct: 535 KIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLG 594

Query: 575 CSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEG 634
            S IE+   +  F VGDK HP +K I++ L  ++  L++ GFVP T  VL+D++ E KE 
Sbjct: 595 YSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLERRLKEVGFVPYTESVLHDLNYEEKEE 654

Query: 635 ALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFH 694
            LS HSE++A+AYGLIST PGTT+RI KNLR C NCHSA KLISK+  REII RD NRFH
Sbjct: 655 NLSFHSERIAVAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIVRDANRFH 714

Query: 695 HFKDGNCSCNDYW 707
           HFKDG CSC DYW
Sbjct: 715 HFKDGLCSCGDYW 727


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 289/688 (42%), Positives = 406/688 (59%), Gaps = 92/688 (13%)

Query: 103 RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE 162
           R +  ++SP  A   Y  M+ +    + YT+P ++++C+   +  E KQ+H HVLKLG +
Sbjct: 186 RAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFD 245

Query: 163 SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDAR------ 216
           SD +V  +LIN ++    +  A  VFN+SS+ D+VS+ +++ GY   G +++A+      
Sbjct: 246 SDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM 305

Query: 217 -------------------------QLFDEM------------------PIREE---NFV 230
                                    +LFDEM                   + EE    FV
Sbjct: 306 PERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFV 365

Query: 231 P--------NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
                    +E   V+ LSACA++  + +G  + SL    G  S +++ NALI MYSKCG
Sbjct: 366 GMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCG 425

Query: 283 DLVKARDLFE-------------------------------SIEKRDVISWNVMIGGYTH 311
           D++ AR LF+                               S+ ++DV+SW+ MI GY  
Sbjct: 426 DIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQ 485

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
              + E L LF++M  S  +P++ T +SV+ ACA L AL+ GKW+HAYI +N   +N V 
Sbjct: 486 NDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTIN-VI 544

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
           L T+LIDMY KCG ++ A +VF GM  K +++WNA+I GLAM+G  + +L +FS M    
Sbjct: 545 LGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCH 604

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
           + P++ITF+GVL AC H GL+D G+ +F +MI D+KI P ++HYGCMVDLLGRAG   EA
Sbjct: 605 VTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEA 664

Query: 492 EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA 551
           E LL  M M PD A W +LLGAC+ HG  E+G  V + L+EL+P++ G +VLLSN+YA  
Sbjct: 665 EELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASK 724

Query: 552 GRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALL 611
           G+WDDV  IR  +    + K+PGCS IE   V+HEFL GDK HP    I +ML E+   L
Sbjct: 725 GKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKL 784

Query: 612 EKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCH 671
           +  G+ PD +EVL D+DEE KE  L  HSEKLAIA+GLI+  P T IRI+KNLR+C +CH
Sbjct: 785 KLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCH 844

Query: 672 SATKLISKIFNREIIARDRNRFHHFKDG 699
           +A KLISK F R+I+ RDR+RFHHF+ G
Sbjct: 845 TAAKLISKAFCRKIVVRDRHRFHHFEQG 872



 Score =  183 bits (464), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 111/392 (28%), Positives = 206/392 (52%), Gaps = 32/392 (8%)

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           A  +F+ + E + V W+ +I     +     AI+ +V M   G + +       L +CA 
Sbjct: 329 ACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACAN 388

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
           +  ++ GK IH+  LK+G ES   +  +LI MY++ G++  AR +F+++ L D +S+ ++
Sbjct: 389 LLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSM 448

Query: 203 ITGYASRGYLDDARQLFDEMPIRE-----------------------------ENFVPNE 233
           I+GY     +D+A+ +FD MP ++                               F P+E
Sbjct: 449 ISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDE 508

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
           +T+V+V+SACA + +LE G WV + I+ +GL  N+ +   LIDMY KCG +  A ++F  
Sbjct: 509 TTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYG 568

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
           + ++ + +WN +I G       + +L +F  M + ++ PN++TF+ VL AC ++G +D G
Sbjct: 569 MIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEG 628

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLA 412
           +     +  +H+   NV  +  ++D+  + G ++ AE++ + M     +A+W A++    
Sbjct: 629 QHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACK 688

Query: 413 MHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
            HG ++    +  ++I   LQPD   F  +LS
Sbjct: 689 KHGDSEMGRRVGRKLI--ELQPDHDGFHVLLS 718



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 173/357 (48%), Gaps = 42/357 (11%)

Query: 33  SLALLSKCTNMQNI---KQVHSQIIKTGLH---NTQFAL----SKLIEICAVSPFGDLSY 82
           +++ LS C N+  +   K +HS  +K G     N Q AL    SK  +I       D +Y
Sbjct: 379 AVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAY 438

Query: 83  AL----------------------LVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVR 120
            L                       +F+++ E + V W+++I G++ +      +  +  
Sbjct: 439 LLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQE 498

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           M +SGF P+  T   ++ +CA+++A+ +GK +HA++ + GL  +  + T+LI+MY + G 
Sbjct: 499 MQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGC 558

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
           +E+A  VF     +   ++ ALI G A  G ++ +  +F  M  ++ +  PNE T + VL
Sbjct: 559 VETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNM--KKCHVTPNEITFMGVL 616

Query: 241 SACAHMGSLELG-NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR-D 298
            AC HMG ++ G +   S+I  H +  N+     ++D+  + G L +A +L   +    D
Sbjct: 617 GACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPD 676

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKW 355
           V +W  ++G      D +    + R++++  ++P+   F  VL +  Y      GKW
Sbjct: 677 VATWGALLGACKKHGDSEMGRRVGRKLIE--LQPDHDGF-HVLLSNIYASK---GKW 727


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 281/697 (40%), Positives = 421/697 (60%), Gaps = 70/697 (10%)

Query: 15  LHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAV 74
           L+F P   PP  L+ ++P     + C   +++KQ+H+  IKTG        +++I+ CA 
Sbjct: 12  LNFSPQ--PP--LILSKP----FTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAF 63

Query: 75  SPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVV---AIKFYVRMILSGFV-PNT 130
           S   D+ YA  VF  + EPN   WN I+R  + ++   +   A+  +  M+  G V PN 
Sbjct: 64  SS-RDIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNR 122

Query: 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK 190
           +TFP +LK+CA+ S + EGKQIH  ++K G   D FV ++L+ M                
Sbjct: 123 FTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRM---------------- 166

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250
                          Y     ++DA  LF +              VV    +C     +E
Sbjct: 167 ---------------YVMCAVMEDAYSLFCK-------------NVVDFDGSC----QME 194

Query: 251 LGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYT 310
           L        +      N+ + N +ID   + GD+  A++LF+ +  R V+SWNVMI GY 
Sbjct: 195 L--------DKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYA 246

Query: 311 HTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNV 370
               + EA+ LF++M  SNI+PN VT +SVLPA A +GAL+LGKWIH Y  KN  ++++V
Sbjct: 247 QNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDV 306

Query: 371 SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE 430
            L ++L+DMY+KCG+I  A QVF+ +  +   +W+A+I   AMHG+A+ A+  F  M   
Sbjct: 307 -LGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKA 365

Query: 431 GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
           G+ P+D+ ++G+LSAC+HAGL++ GR +F+ M++   + P+++HYGCMVDLLGRAG  +E
Sbjct: 366 GVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEE 425

Query: 491 AEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAG 550
           AE L++ M ++PD  IW +LLGAC++H  L++GE VA+ L+EL P + G+YV LSN+YA 
Sbjct: 426 AEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYAS 485

Query: 551 AGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDAL 610
            G W+ VA +R ++    ++K PGCS IE+  ++HEFLV D  H ++K I  ML E+   
Sbjct: 486 LGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMK 545

Query: 611 LEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNC 670
           L  +G+ P+T EV  + DE+ +  AL +HSEK+A+A+GLIST P   ++IVKNLR+C +C
Sbjct: 546 LRSNGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDC 605

Query: 671 HSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           H++ KLIS I+ R+II RDR RFH F+ G+CSC DYW
Sbjct: 606 HASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 283/687 (41%), Positives = 407/687 (59%), Gaps = 46/687 (6%)

Query: 24  PYKLLQNQPSLALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDL 80
           P +       L LL  C   +++   K++H   +K   +     L KL  +        +
Sbjct: 2   PLRFEVKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRL--YLSCNQV 59

Query: 81  SYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSC 140
             A  +F+ I  P+ ++WN IIR ++ +     AI  Y  M+  G  PN YT+PF+LK+C
Sbjct: 60  VLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKAC 119

Query: 141 AKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYT 200
           + + AI +G +IH+H    GLESD FV T+L++ YA+ G L  A+ +F+  S RD V++ 
Sbjct: 120 SGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWN 179

Query: 201 ALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE 260
           A+I G +  G  DDA QL   M ++EE   PN ST+V VL  C                 
Sbjct: 180 AMIAGCSLYGLCDDAVQLI--MQMQEEGICPNSSTIVGVLPTC----------------- 220

Query: 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALM 320
                              +C  L+ AR +F+ +  R+ +SW+ MIGGY  +   KEAL 
Sbjct: 221 -------------------QC--LLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALD 259

Query: 321 LFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMY 380
           +FR M  S I+P+  T L VLPAC++L AL  G   H Y+       + + +  +LIDMY
Sbjct: 260 IFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTL-ICNALIDMY 318

Query: 381 AKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFV 440
           +KCG I  A +VF+ M    + SWNAMI G  +HG   +AL LF  ++  GL+PDDITF+
Sbjct: 319 SKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFI 378

Query: 441 GVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEM 500
            +LS+C+H+GL+  GR +F+AM +D+ I P+++H  CMVD+LGRAGL DEA   ++ M  
Sbjct: 379 CLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPF 438

Query: 501 KPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATI 560
           +PD  IW++LL ACR+H  +ELGE V+K +  L PE+ G +VLLSN+Y+ AGRWDD A I
Sbjct: 439 EPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHI 498

Query: 561 RTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDT 620
           R    D G+KK+PGCS IE+  +VH F+ GD+ H Q   I   L+E+   +++ G+  + 
Sbjct: 499 RITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAEC 558

Query: 621 SEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKI 680
           S V  D++EE KE  L +HSEKLAIA+G+++ K G  I + KNLRVCG+CH+A K ++ I
Sbjct: 559 SFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLI 618

Query: 681 FNREIIARDRNRFHHFKDGNCSCNDYW 707
             REI  RD NRFHHFK+G C+C D+W
Sbjct: 619 TKREITVRDANRFHHFKNGTCNCGDFW 645


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 277/663 (41%), Positives = 411/663 (61%), Gaps = 27/663 (4%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +++H    K G  +  F  + L+ +      G L  A LVF+ + E + V W  ++  + 
Sbjct: 108 RELHGFAQKNGFASDVFVCNALMNM--YEKCGCLVSARLVFDQMPERDVVSWTTMLGCYV 165

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLK-LGLES-D 164
            S +   A++    M   G   +      ++     +  +  G+ +H ++++ +G E  +
Sbjct: 166 RSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKME 225

Query: 165 PFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPI 224
             + T+LI+MY + G L SA+ +F++ S R  VS+T +I G      LD+  + F+ M  
Sbjct: 226 VSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRM-- 283

Query: 225 REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
            EE   PNE T++++++ C  +G+L+LG W  + +  +G G +L +  ALIDMY KCG +
Sbjct: 284 LEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQV 343

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
             AR LF  ++K+DV  W+V+I  Y H S   +   LF +ML ++++PN+VT +S+L  C
Sbjct: 344 GYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLC 403

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
           A  GALDLGKW HAYI+++  +++ V L T+LI+MYAKCG++  A  +F+    + +  W
Sbjct: 404 AEAGALDLGKWTHAYINRHGLEVD-VILETALINMYAKCGDVTIARSLFNEAMQRDIRMW 462

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
           N M++G +MHG   +AL LFS M   G++P+DITFV +  AC+H+GL+            
Sbjct: 463 NTMMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHACSHSGLM------------ 510

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGE 524
                   +HYGC+VDLLGRAG  DEA  +++ M M+P+  IW +LL AC++H  L LGE
Sbjct: 511 --------EHYGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAACKLHKNLALGE 562

Query: 525 SVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVV 584
             A+ +LEL+P+N G  VL SN+YA A RW+DV ++R  ++  GMKK PG S IEV   V
Sbjct: 563 VAARKILELDPQNCGYSVLKSNIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVSGSV 622

Query: 585 HEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLA 644
           H F  GDK   Q+  +YEM+ E+   L +SG+ P+T+ VL ++DEE KE ALS+HSEKLA
Sbjct: 623 HHFKSGDKACTQTTKVYEMVTEMCIKLRESGYTPNTAAVLLNIDEEEKESALSYHSEKLA 682

Query: 645 IAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCN 704
            A+GLIST PGT IRIVKNLR+C +CH+ATKL+SKI+ R II RDRNRFHHF +G CSC 
Sbjct: 683 TAFGLISTAPGTPIRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCM 742

Query: 705 DYW 707
            YW
Sbjct: 743 GYW 745



 Score =  234 bits (596), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 155/501 (30%), Positives = 253/501 (50%), Gaps = 40/501 (7%)

Query: 42  NMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNI 101
           N+Q   Q+H+  IKT  HN               PF         F       +  +N +
Sbjct: 21  NLQQTHQLHAHFIKTQFHNPH-------------PF---------FSQSHFTPEANYNLL 58

Query: 102 IRGHSLSSSPVVAIKFYVRMILSGFVP-NTYTFPFILKSCAKISAISEGKQIHAHVLKLG 160
           I  ++ +  P  +   Y+ M  +     + +  P +LK+CA+ S+   G+++H    K G
Sbjct: 59  ISSYTNNHLPQASFNCYLHMRSNDAAALDNFILPSLLKACAQASSGDLGRELHGFAQKNG 118

Query: 161 LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD 220
             SD FV  +L+NMY + G L SARLVF++   RD VS+T ++  Y       +A +L  
Sbjct: 119 FASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKAFGEALRL-- 176

Query: 221 EMPIREENFVPNESTVVTVLSACAHMGSL---ELGNWVCSLIEGHGLGSNLHV--TNALI 275
              +RE  FV  + + V ++S  A  G+L   + G  V   I  +     + V  T ALI
Sbjct: 177 ---VREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALI 233

Query: 276 DMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV 335
           DMY K G L  A+ LF+ + KR V+SW VMI G   +    E    F +ML+  + PN++
Sbjct: 234 DMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEI 293

Query: 336 TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
           T LS++  C ++G LDLGKW HAY+ +N   + +++L T+LIDMY KCG +  A  +F+G
Sbjct: 294 TLLSLITECGFVGTLDLGKWFHAYLLRNGFGM-SLALVTALIDMYGKCGQVGYARALFNG 352

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
           +  K +  W+ +IS  A     D+  +LF  M+   ++P+++T V +LS C  AG LD+G
Sbjct: 353 VKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAGALDLG 412

Query: 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACR 515
           + + +A I  + +   +     ++++  + G    A +L     M+ D  +W +++    
Sbjct: 413 K-WTHAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNE-AMQRDIRMWNTMMAGFS 470

Query: 516 VHG----RLELGESVAKHLLE 532
           +HG     LEL   +  H +E
Sbjct: 471 MHGCGKEALELFSEMESHGVE 491


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  537 bits (1383), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 272/613 (44%), Positives = 383/613 (62%), Gaps = 35/613 (5%)

Query: 32  PSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           P L+LL KC ++  +KQ+ SQ++ TGL    FA S+LI  CA+S + DL Y   +    R
Sbjct: 8   PFLSLLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTR 67

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI-LSGFVPNTYTFPFILKSCAKISAISEGK 150
            PN   WN  IRG   S +P  A+  Y R++   G  P+ YT+P + K+CA++S I  G 
Sbjct: 68  NPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGS 127

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           +I  HVL LG +SD FV  ++I++    G+L+ AR +F+KS +RD VS+ ++I GY  RG
Sbjct: 128 EILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRG 187

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
           +  +A   + EM +  E   P+E T++ V+S+CA +  L+LG      IE +GL   + +
Sbjct: 188 WAYEALNFYREMKV--EGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPL 245

Query: 271 TNALIDMYSKCGDLVKARDLFESIEK-------------------------------RDV 299
            NAL+DMY KCG+L  AR LF+S+                                 +DV
Sbjct: 246 ANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDV 305

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
           + WN MIGGY H +  KEAL LF +M   NI P++VT +S L AC+ LGALD+G WIH Y
Sbjct: 306 VPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHY 365

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADK 419
           I+K+   L NV+L T+LIDMYAKCG I  A QVF  +  +   +W A+ISGLA+HG A  
Sbjct: 366 IEKHELSL-NVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHG 424

Query: 420 ALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479
           A++ FS MI   + PD++TF+G+LSAC H GL++ GR+YF+ M   + +SPKL+HY CMV
Sbjct: 425 AIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMV 484

Query: 480 DLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG 539
           DLLGRAGL +EAE L+K+M ++ DA +W +L  ACR+HG + +GE  A  LL+++P + G
Sbjct: 485 DLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSG 544

Query: 540 AYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKH 599
            YVLL+NMY  A  W +    R  +  +G++K PGCSSIEV  +V+EF+V DK HPQS+ 
Sbjct: 545 IYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQ 604

Query: 600 IYEMLDEIDALLE 612
           IYE L ++   LE
Sbjct: 605 IYECLIQLTRQLE 617


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  536 bits (1382), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 273/620 (44%), Positives = 385/620 (62%), Gaps = 11/620 (1%)

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
           WN+II   + S   + A+  +  M      PN  TFP  +KSC+ +  +  GKQIH    
Sbjct: 54  WNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQQAF 113

Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ 217
             G  SD FV ++LI+MY++ G L  AR +F++   R+ VS+T++I+GY       +A  
Sbjct: 114 VFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVF 173

Query: 218 LFDEMPIREEN---------FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
           LF E  + +E             +   +  V+SACA +    +   V  L    G    L
Sbjct: 174 LFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCL 233

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ- 327
            V N L+D Y+KCG++  +R +F+ +E+ DV SWN +I  Y       EA  LF  M++ 
Sbjct: 234 AVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKR 293

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
             +  N VT  +VL ACA+ GAL +GK IH  + K   + +N+ + TS++DMY KCG ++
Sbjct: 294 GEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELE-DNLVVGTSIVDMYCKCGRVE 352

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
            A + FD +  K + SW  M++G  MHG   +A+ +F  MI  G++P+ ITFV VL+AC+
Sbjct: 353 MARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACS 412

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
           HAGLL  G  +FN M  ++ + P ++HY CMVDLLGRAG   EA  L++ M++KPD  +W
Sbjct: 413 HAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVW 472

Query: 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
            SLLGACR+H  +ELGE  A+ L +L+P N G YVLLSN+YA AGRWDDV  +R  + + 
Sbjct: 473 GSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNH 532

Query: 568 GMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
           G+ K PG S +E    VH FLVGDK HPQ + IYE LDE++  L++ G++P+ + VLYD+
Sbjct: 533 GLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNVKLQEVGYMPNVTSVLYDV 592

Query: 628 DEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIA 687
           D E K   L  HSEKLA+A+G++++ PG+ I+I+KNLR+CG+CH A KLISKI NREI+ 
Sbjct: 593 DVEEKGMVLRVHSEKLAVAFGIMNSVPGSVIQIIKNLRICGDCHFAIKLISKIVNREIVI 652

Query: 688 RDRNRFHHFKDGNCSCNDYW 707
           RD  RFHHFKDG CSC DYW
Sbjct: 653 RDSKRFHHFKDGLCSCGDYW 672



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 157/310 (50%), Gaps = 13/310 (4%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           VH   +K G        + L++  A +  G++S +  VF+ + E +   WN++I  ++ +
Sbjct: 220 VHGLAVKKGFEGCLAVGNTLMD--AYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQN 277

Query: 109 SSPVVAIKFYVRMILSGFVP-NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFV 167
              V A   +  M+  G V  N  T   +L +CA   A+  GK IH  V+K+ LE +  V
Sbjct: 278 GLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVV 337

Query: 168 HTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREE 227
            TS+++MY + G +E AR  F++   ++  S+T ++ GY   G+  +A ++F EM IR  
Sbjct: 338 GTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEM-IR-C 395

Query: 228 NFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
              PN  T V+VL+AC+H G L+ G +W   +     +   +   + ++D+  + G L +
Sbjct: 396 GIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKE 455

Query: 287 ARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
           A  L + ++ K D I W  ++G      + +   +  R++ +  ++P++  +  VL +  
Sbjct: 456 AYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFK--LDPSNCGYY-VLLSNI 512

Query: 346 YLGALDLGKW 355
           Y    D G+W
Sbjct: 513 Y---ADAGRW 519



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 151/332 (45%), Gaps = 52/332 (15%)

Query: 288 RDLF-ESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           R +F + ++K  V SWN +I  +  + D  +AL  F  M + ++ PN  TF   + +C+ 
Sbjct: 39  RSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSS 98

Query: 347 LGALDLGKWIH--AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
           L  L  GK IH  A++       +++ + ++LIDMY+KCG +  A ++FD +  + + SW
Sbjct: 99  LYDLCAGKQIHQQAFV---FGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSW 155

Query: 405 NAMISGLAMHGKADKALSLFSRMI-----------GEGLQPDDITFVGVLSACNHA---- 449
            +MISG   + +A +A+ LF   +           G G+  D +    V+SAC       
Sbjct: 156 TSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKS 215

Query: 450 ---------------GLLDIGRQYFNAMIQDYKISPKLQHYGCM-----------VDLLG 483
                          G L +G    +A  +  +IS   + +  M           + +  
Sbjct: 216 VTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYA 275

Query: 484 RAGLFDEAEALLKTM----EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE-NP 538
           + GL  EA +L   M    E++ +A   +++L AC   G L++G+ +   ++++E E N 
Sbjct: 276 QNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNL 335

Query: 539 GAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
                + +MY   GR +       RL  K +K
Sbjct: 336 VVGTSIVDMYCKCGRVEMARKAFDRLKRKNVK 367



 Score = 48.1 bits (113), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 45/221 (20%), Positives = 87/221 (39%), Gaps = 40/221 (18%)

Query: 35  ALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           A+L  C +   +Q  K +H Q++K  L +     + ++++      G +  A   F+ ++
Sbjct: 305 AVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDM--YCKCGRVEMARKAFDRLK 362

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             N   W  ++ G+ +      A+K +  MI  G  PN  TF  +L +C+    + EG  
Sbjct: 363 RKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWH 422

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
              + +K   + +P +                               Y+ ++      GY
Sbjct: 423 WF-NKMKCEFDVEPGIE-----------------------------HYSCMVDLLGRAGY 452

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
           L +A  L  EM ++ +  V       ++L AC    ++ELG
Sbjct: 453 LKEAYGLIQEMKVKPDFIVWG-----SLLGACRIHKNVELG 488


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  536 bits (1381), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 276/706 (39%), Positives = 425/706 (60%), Gaps = 40/706 (5%)

Query: 36  LLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +LS CT +       QVH  ++K GL    F  + LI   A    G + +   VFE + E
Sbjct: 137 VLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYA--ECGHMDHGHKVFEGMSE 194

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            N V W ++I G++    P  A+  +  M+ +G  P++ T   ++ +CAK+  +  G+++
Sbjct: 195 RNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERV 254

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
            A++ +LGL+ +  +  +L++MY + G +++A+ +F++   R+ V Y  +++ YA +G  
Sbjct: 255 CAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLA 314

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
            +A  + DEM   ++   P+  T+++ +SA A +  L  G      +  +GL     + N
Sbjct: 315 REALAILDEM--LQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGN 372

Query: 273 ALIDMYSKCG-------------------------------DLVKARDLFESIEKRDVIS 301
            +IDMY KCG                               D+  A ++F  I +R+ + 
Sbjct: 373 VIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVF 432

Query: 302 WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361
           WN MI G    S +++A+ LFR+M    I+ + VT + +  AC YLGA +L KW+H YI+
Sbjct: 433 WNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIE 492

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421
           KN    + + L T+L+DM+A+CG+ ++A QVF+ M  + +++W A I  +AM G  + A 
Sbjct: 493 KNGIPCD-MRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGAT 551

Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481
            LF++M+ +G++PD + FV VL+AC+H G ++ G   F+ M +D+ ISP+++HYGCMVDL
Sbjct: 552 GLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLM-EDHGISPQIEHYGCMVDL 610

Query: 482 LGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541
           LGRAGL  EA  L+K+M M+P+  +W SLL ACRVH  +E+    A+ + EL P+  G +
Sbjct: 611 LGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVH 670

Query: 542 VLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIY 601
           VLLSN+YA AG+W DVA +R  L +KG++KVPG SS++V  V+HEF  GD+ HP+  HI 
Sbjct: 671 VLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIA 730

Query: 602 EMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIV 661
            ML E++     +G +PD S VL D+DE+ KE  LS HSEKLAIA+GLI+T     IR+V
Sbjct: 731 LMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVV 790

Query: 662 KNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           KNLR+C +CHS  K+ S I+NREII RD NRFH F+ G CSC DYW
Sbjct: 791 KNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 836



 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 199/634 (31%), Positives = 305/634 (48%), Gaps = 75/634 (11%)

Query: 37  LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICA-VSPFGDLSYALLVFETIREPNQ 95
           L  C  +  +KQ+H QI K GL      L+KL+   A ++    L YA   FE  +E  +
Sbjct: 32  LRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVR 91

Query: 96  -----VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
                 + N++IRG+S +     AI  YVRM++ G  PN YTFPF+L  C KI+A  EG 
Sbjct: 92  SDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGI 151

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           Q+H  V+K+GLE D F+   LI+ YA+ G ++    VF   S R+ VS+T+LI GYA   
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGD 211

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
              +A  LF EM   E    P+  T+V V+SACA +  L++G  VC+ I   GL  N  +
Sbjct: 212 RPKEAVSLFFEMV--EAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVM 269

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            NAL+DMY KCG +  A+ LF+    R+++ +N ++  Y      +EAL +  +MLQ   
Sbjct: 270 VNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGP 329

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
            P+ VT LS + A A L  L  GK  H Y+ +N  +  + S+   +IDMY KCG  + A 
Sbjct: 330 RPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWD-SIGNVIIDMYMKCGKPEMAC 388

Query: 391 QVFDGMGYKTLASWNA-------------------------------MISGLAMHGKADK 419
           +VFD M  KT+ SWN+                               MISGL      + 
Sbjct: 389 RVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFED 448

Query: 420 ALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479
           A+ LF  M GEG++ D +T +G+ SAC + G  ++ + + +  I+   I   ++    +V
Sbjct: 449 AIELFREMQGEGIKADRVTMMGIASACGYLGAPELAK-WVHTYIEKNGIPCDMRLNTALV 507

Query: 480 DLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG 539
           D+  R G    A  +   M  + D + WT+ +G                  + +E    G
Sbjct: 508 DMFARCGDPQSAMQVFNKMTER-DVSAWTAAIGT-----------------MAMEGNGEG 549

Query: 540 AYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCS---SIEVGSVVHEFLVGDKVHPQ 596
           A  L + M     + D V  ++          +  CS    +E G  +   +    + PQ
Sbjct: 550 ATGLFNQMLIQGVKPDVVLFVQV---------LTACSHGGQVEQGLHIFSLMEDHGISPQ 600

Query: 597 SKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
            +H   M+D    LL ++G + +  +++  M  E
Sbjct: 601 IEHYGCMVD----LLGRAGLLREAFDLIKSMPME 630



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 102/429 (23%), Positives = 206/429 (48%), Gaps = 40/429 (9%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           + ++S C  ++++   ++V + I + GL   +  ++ L+++      G +  A  +F+  
Sbjct: 236 VCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDM--YMKCGAIDAAKRLFDEC 293

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            + N V++N I+  ++       A+     M+  G  P+  T    + + A++  +  GK
Sbjct: 294 VDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGK 353

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQ-------------------------------NG 179
             H +V++ GLE    +   +I+MY +                               NG
Sbjct: 354 VCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNG 413

Query: 180 ELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTV 239
           ++ESA  VFN+   R+AV +  +I+G   +   +DA +LF EM  + E    +  T++ +
Sbjct: 414 DVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREM--QGEGIKADRVTMMGI 471

Query: 240 LSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV 299
            SAC ++G+ EL  WV + IE +G+  ++ +  AL+DM+++CGD   A  +F  + +RDV
Sbjct: 472 ASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDV 531

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
            +W   IG      + + A  LF QML   ++P+ V F+ VL AC++ G ++ G  I + 
Sbjct: 532 SAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSL 591

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKAD 418
           ++ +H     +  +  ++D+  + G ++ A  +   M  +     W ++++   +H   +
Sbjct: 592 ME-DHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVE 650

Query: 419 KALSLFSRM 427
            A     R+
Sbjct: 651 MATYAAERI 659


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 279/675 (41%), Positives = 407/675 (60%), Gaps = 8/675 (1%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +++ CT  +NI   +QVH+ +++ G     F  + L+++      G +  A ++FE + +
Sbjct: 208 VVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDM--YVKMGRVDIASVIFEKMPD 265

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V WN +I G  L+     AI+  ++M  SG VPN +    ILK+CA   A   G+QI
Sbjct: 266 SDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQI 325

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H  ++K   +SD ++   L++MYA+N  L+ A  VF+  S RD + + ALI+G +  G  
Sbjct: 326 HGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRH 385

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           D+A  +F    +R+E    N +T+  VL + A + +      V +L E  G   + HV N
Sbjct: 386 DEAFSIF--YGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVN 443

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            LID Y KC  L  A  +FE     D+I+   MI   +     + A+ LF +ML+  +EP
Sbjct: 444 GLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEP 503

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           +     S+L ACA L A + GK +HA++ K  Q +++     +L+  YAKCG+I+ AE  
Sbjct: 504 DPFVLSSLLNACASLSAYEQGKQVHAHLIKR-QFMSDAFAGNALVYTYAKCGSIEDAELA 562

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F  +  + + SW+AMI GLA HG   +AL LF RM+ EG+ P+ IT   VL ACNHAGL+
Sbjct: 563 FSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLV 622

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           D  ++YFN+M + + I    +HY CM+DLLGRAG  D+A  L+ +M  + +A++W +LLG
Sbjct: 623 DEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLG 682

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           A RVH   ELG+  A+ L  LEPE  G +VLL+N YA +G W++VA +R  + D  +KK 
Sbjct: 683 ASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKE 742

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
           P  S +EV   VH F+VGDK HP +K IY  LDE+  L+ K+G++P+    L+D+D   K
Sbjct: 743 PAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEK 802

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
           E  LSHHSE+LA+A+ L+ST PG  IR+ KNLR+C +CH A K IS I +REII RD NR
Sbjct: 803 ELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINR 862

Query: 693 FHHFKDGNCSCNDYW 707
           FHHF+DG CSC DYW
Sbjct: 863 FHHFRDGTCSCGDYW 877



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 157/522 (30%), Positives = 246/522 (47%), Gaps = 41/522 (7%)

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           A  VF+ I +P  V W++++  +S +  P  AI+ +  M   G   N +  P +LK C  
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLK-CVP 114

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKS-SLRDAVSYTA 201
            + +  G Q+HA  +  G  SD FV  +L+ MY   G ++ AR VF+++ S R+AVS+  
Sbjct: 115 DAQL--GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNG 172

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
           L++ Y       DA Q+F EM        P E     V++AC    +++ G  V +++  
Sbjct: 173 LMSAYVKNDQCGDAIQVFGEMVW--SGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVR 230

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALML 321
            G   ++   NAL+DMY K G +  A  +FE +   DV+SWN +I G         A+ L
Sbjct: 231 MGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIEL 290

Query: 322 FRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381
             QM  S + PN     S+L ACA  GA DLG+ IH ++ K +   ++  +   L+DMYA
Sbjct: 291 LLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDY-IGVGLVDMYA 349

Query: 382 KCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVG 441
           K   +  A +VFD M ++ L  WNA+ISG +  G+ D+A S+F  +  EGL  +  T   
Sbjct: 350 KNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAA 409

Query: 442 VLSACN-----------HAGLLDIG----RQYFNAMIQDY----KISPKLQHYG------ 476
           VL +             HA    IG        N +I  Y     +S  ++ +       
Sbjct: 410 VLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGD 469

Query: 477 --CMVDLLGRAGLFDEAEALLKT-MEM-----KPDAAIWTSLLGACRVHGRLELGESVAK 528
              +  ++      D  E  +K  MEM     +PD  + +SLL AC      E G+ V  
Sbjct: 470 IIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHA 529

Query: 529 HLLELE-PENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
           HL++ +   +  A   L   YA  G  +D     + L ++G+
Sbjct: 530 HLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGV 571



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/381 (30%), Positives = 190/381 (49%), Gaps = 13/381 (3%)

Query: 141 AKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYT 200
           A   A+  G  +HA++LK G  +   +   LI+ Y++      AR VF++      VS++
Sbjct: 15  AAAQALLPGAHLHANLLKSGFLAS--LRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWS 72

Query: 201 ALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE 260
           +L+T Y++ G    A Q F  M  R E    NE  +  VL     +   +LG  V ++  
Sbjct: 73  SLVTAYSNNGLPRSAIQAFHGM--RAEGVCCNEFALPVVLKC---VPDAQLGAQVHAMAM 127

Query: 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLF-ESIEKRDVISWNVMIGGYTHTSDYKEAL 319
             G GS++ V NAL+ MY   G +  AR +F E+  +R+ +SWN ++  Y       +A+
Sbjct: 128 ATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAI 187

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK-NHQKLNNVSLWTSLID 378
            +F +M+ S I+P +  F  V+ AC     +D G+ +HA + +  ++K  +V    +L+D
Sbjct: 188 QVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEK--DVFTANALVD 245

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
           MY K G +  A  +F+ M    + SWNA+ISG  ++G   +A+ L  +M   GL P+   
Sbjct: 246 MYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFM 305

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
              +L AC  AG  D+GRQ    MI+    S      G +VD+  +    D+A  +   M
Sbjct: 306 LSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVG-LVDMYAKNHFLDDAMKVFDWM 364

Query: 499 EMKPDAAIWTSLLGACRVHGR 519
             + D  +W +L+  C   GR
Sbjct: 365 SHR-DLILWNALISGCSHGGR 384



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 133/293 (45%), Gaps = 18/293 (6%)

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           + N LI  YSKC     AR +F+ I     +SW+ ++  Y++    + A+  F  M    
Sbjct: 39  LRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEG 98

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           +  N+     VL     +    LG  +HA         ++V +  +L+ MY   G +  A
Sbjct: 99  VCCNEFALPVVLKC---VPDAQLGAQVHAMAMATGFG-SDVFVANALVAMYGGFGFMDDA 154

Query: 390 EQVFDGMGY-KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
            +VFD  G  +   SWN ++S    + +   A+ +F  M+  G+QP +  F  V++AC  
Sbjct: 155 RRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTG 214

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI-- 506
           +  +D GRQ  +AM+        +     +VD+  + G  D A  + + M   PD+ +  
Sbjct: 215 SRNIDAGRQ-VHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKM---PDSDVVS 270

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPEN--PGAYVLLS--NMYAGAGRWD 555
           W +L+  C ++G         + LL+++     P  ++L S     AGAG +D
Sbjct: 271 WNALISGCVLNGH---DHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFD 320


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 271/675 (40%), Positives = 409/675 (60%), Gaps = 9/675 (1%)

Query: 36  LLSKC---TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LL  C    +++  K++H Q+I        FA++ ++ + A     D +Y +  F+ + E
Sbjct: 153 LLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKM--FDRMPE 210

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V WN II G S +     A++  +RM   G  P++ T   +L + A +  +  GK I
Sbjct: 211 RDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSI 270

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H + ++ G      + T+L +MY++ G +E+ARL+F+    +  VS+ +++ GY   G  
Sbjct: 271 HGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEP 330

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           + A  +F++M   EE   P   T++  L ACA +G LE G +V   ++   LGS++ V N
Sbjct: 331 EKAIAVFEKM--LEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMN 388

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           +LI MYSKC  +  A D+F ++  R  +SWN MI GY       EAL  F +M    ++P
Sbjct: 389 SLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKP 448

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           +  T +SV+PA A L      KWIH  I ++     N+ + T+L+DMY+KCG I  A ++
Sbjct: 449 DSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLD-KNIFVTTALVDMYSKCGAIHMARKL 507

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           FD +  + + +WNAMI G   HG    AL LF +M    ++P+DIT++ V+SAC+H+GL+
Sbjct: 508 FDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLV 567

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           D G ++F +M QDY + P + HYG MVDLLGRAG   EA   ++ M + P   ++ +  G
Sbjct: 568 DEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXG 627

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           AC++H  +E+GE  AK L EL P+  G +VLL+N+YA   +W  VA +R  +  KG+KK 
Sbjct: 628 ACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKT 687

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
           PGCS +E+ + VH F  G   HPQSK IY  L+E+   ++ +G+VPDT+ +L D++++ +
Sbjct: 688 PGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLIL-DVEDDVQ 746

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
           E  L+ HSEKLAIA+GL++T PGTTI + KNLRVCG+CH+ATK IS +  REII RD  R
Sbjct: 747 EQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQR 806

Query: 693 FHHFKDGNCSCNDYW 707
           FHHFK+G CSC DYW
Sbjct: 807 FHHFKNGICSCGDYW 821



 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 174/572 (30%), Positives = 296/572 (51%), Gaps = 60/572 (10%)

Query: 31  QPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
            P+  LL  CT+M+ + Q+   +IK GL+N     +KL+ +   S +G ++ A  VFE I
Sbjct: 50  HPAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSL--FSKYGSINEAARVFEPI 107

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            +    +++ +++G++ +SS   A+ F  RM      P  Y F ++LK C   + +  GK
Sbjct: 108 DDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGK 167

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           +IH  ++     ++ F  T ++NMYA+  +++ A  +F++   RD VS+  +I G++  G
Sbjct: 168 EIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNG 227

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
           +   A +L   M  ++E   P+  T+VTVL A A +G L +G  +       G    +++
Sbjct: 228 FAKKALELVLRM--QDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNI 285

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
           + AL DMYSKCG +  AR +F+ ++++ V+SWN M+ GY    + ++A+ +F +ML+  I
Sbjct: 286 STALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGI 345

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           +P  VT +  L ACA LG L+ GK++H ++D+ +   +++S+  SLI MY+KC  +  A 
Sbjct: 346 DPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLG-SDISVMNSLISMYSKCKRVDIAS 404

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV------LS 444
            +F+ +  +T  SWNAMI G A +G+  +AL+ FS M   G++PD  T V V      LS
Sbjct: 405 DIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELS 464

Query: 445 ACNHA-----------------------------GLLDIGRQYFNAMIQDYKISPKLQHY 475
              HA                             G + + R+ F+ MI D  +      +
Sbjct: 465 VTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFD-MISDRHVIT----W 519

Query: 476 GCMVDLLGRAGLFDEAEALLKTME---MKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
             M+D  G  GL   A  L   M+   ++P+   + S++ AC   G ++ G    K + +
Sbjct: 520 NAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQ 579

Query: 533 ---LEP--ENPGAYVLLSNMYAGAGR----WD 555
              LEP  ++ GA V   ++   AGR    WD
Sbjct: 580 DYGLEPSMDHYGAMV---DLLGRAGRIKEAWD 608


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 279/675 (41%), Positives = 407/675 (60%), Gaps = 8/675 (1%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +++ CT  +NI   +QVH+ +++ G     F  + L+++      G +  A ++FE + +
Sbjct: 115 VVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDM--YVKMGRVDIASVIFEKMPD 172

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V WN +I G  L+     AI+  ++M  SG VPN +    ILK+CA   A   G+QI
Sbjct: 173 SDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQI 232

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H  ++K   +SD ++   L++MYA+N  L+ A  VF+  S RD + + ALI+G +  G  
Sbjct: 233 HGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRH 292

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           D+A  +F    +R+E    N +T+  VL + A + +      V +L E  G   + HV N
Sbjct: 293 DEAFSIF--YGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVN 350

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            LID Y KC  L  A  +FE     D+I+   MI   +     + A+ LF +ML+  +EP
Sbjct: 351 GLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEP 410

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           +     S+L ACA L A + GK +HA++ K  Q +++     +L+  YAKCG+I+ AE  
Sbjct: 411 DPFVLSSLLNACASLSAYEQGKQVHAHLIKR-QFMSDAFAGNALVYTYAKCGSIEDAELA 469

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F  +  + + SW+AMI GLA HG   +AL LF RM+ EG+ P+ IT   VL ACNHAGL+
Sbjct: 470 FSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLV 529

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           D  ++YFN+M + + I    +HY CM+DLLGRAG  D+A  L+ +M  + +A++W +LLG
Sbjct: 530 DEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLG 589

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           A RVH   ELG+  A+ L  LEPE  G +VLL+N YA +G W++VA +R  + D  +KK 
Sbjct: 590 ASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKE 649

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
           P  S +EV   VH F+VGDK HP +K IY  LDE+  L+ K+G++P+    L+D+D   K
Sbjct: 650 PAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEK 709

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
           E  LSHHSE+LA+A+ L+ST PG  IR+ KNLR+C +CH A K IS I +REII RD NR
Sbjct: 710 ELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINR 769

Query: 693 FHHFKDGNCSCNDYW 707
           FHHF+DG CSC DYW
Sbjct: 770 FHHFRDGTCSCGDYW 784



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 135/493 (27%), Positives = 240/493 (48%), Gaps = 13/493 (2%)

Query: 30  NQPSLALLSKCT-NMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVF- 87
           N+ +L ++ KC  + Q   QVH+  + TG  +  F  + L+ +     FG +  A  VF 
Sbjct: 9   NEFALPVVLKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAM--YGGFGFMDDARRVFD 66

Query: 88  ETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAIS 147
           E   E N V WN ++  +  +     AI+ +  M+ SG  P  + F  ++ +C     I 
Sbjct: 67  EAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNID 126

Query: 148 EGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA 207
            G+Q+HA V+++G E D F   +L++MY + G ++ A ++F K    D VS+ ALI+G  
Sbjct: 127 AGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCV 186

Query: 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
             G+   A +L  +M  +    VPN   + ++L ACA  G+ +LG  +   +      S+
Sbjct: 187 LNGHDHRAIELLLQM--KSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSD 244

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
            ++   L+DMY+K   L  A  +F+ +  RD+I WN +I G +H   + EA  +F  + +
Sbjct: 245 DYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRK 304

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
             +  N  T  +VL + A L A    + +HA  +K    + +  +   LID Y KC  + 
Sbjct: 305 EGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKI-GFIFDAHVVNGLIDSYWKCSCLS 363

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
            A +VF+      + +  +MI+ L+     + A+ LF  M+ +GL+PD      +L+AC 
Sbjct: 364 DAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACA 423

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI- 506
                + G+Q    +I+   +S        +V    + G  ++AE    ++   P+  + 
Sbjct: 424 SLSAYEQGKQVHAHLIKRQFMSDAFAG-NALVYTYAKCGSIEDAELAFSSL---PERGVV 479

Query: 507 -WTSLLGACRVHG 518
            W++++G    HG
Sbjct: 480 SWSAMIGGLAQHG 492



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 146/484 (30%), Positives = 226/484 (46%), Gaps = 41/484 (8%)

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           M   G   N +  P +LK C   + +  G Q+HA  +  G  SD FV  +L+ MY   G 
Sbjct: 1   MRAEGVCCNEFALPVVLK-CVPDAQL--GAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 181 LESARLVFNKS-SLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTV 239
           ++ AR VF+++ S R+AVS+  L++ Y       DA Q+F EM        P E     V
Sbjct: 58  MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVW--SGIQPTEFGFSCV 115

Query: 240 LSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV 299
           ++AC    +++ G  V +++   G   ++   NAL+DMY K G +  A  +FE +   DV
Sbjct: 116 VNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDV 175

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
           +SWN +I G         A+ L  QM  S + PN     S+L ACA  GA DLG+ IH +
Sbjct: 176 VSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGF 235

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADK 419
           + K +   ++  +   L+DMYAK   +  A +VFD M ++ L  WNA+ISG +  G+ D+
Sbjct: 236 MIKANADSDDY-IGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDE 294

Query: 420 ALSLFSRMIGEGLQPDDITFVGVLSACN-----------HAGLLDIGRQY----FNAMIQ 464
           A S+F  +  EGL  +  T   VL +             HA    IG  +     N +I 
Sbjct: 295 AFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLID 354

Query: 465 DY----KISPKLQHYG--------CMVDLLGRAGLFDEAEALLKT-MEM-----KPDAAI 506
            Y     +S  ++ +          +  ++      D  E  +K  MEM     +PD  +
Sbjct: 355 SYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFV 414

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELE-PENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
            +SLL AC      E G+ V  HL++ +   +  A   L   YA  G  +D     + L 
Sbjct: 415 LSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLP 474

Query: 566 DKGM 569
           ++G+
Sbjct: 475 ERGV 478


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 266/578 (46%), Positives = 380/578 (65%), Gaps = 12/578 (2%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELE-SARLVFN---KS 191
           +L++C   +A+ +  QIH H+LKLGL ++P V T   ++ +     + +A  +F+    +
Sbjct: 35  LLQAC---NALPKLTQIHTHILKLGLHNNPLVLTKFASISSLIHATDYAASFLFSAEADT 91

Query: 192 SLRDAVSYTALITGYASRGY-LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250
            L DA  +  LI  YA  G+  D A  L+  M    +  +PN+ T   VL ACA +  L 
Sbjct: 92  RLYDAFLFNTLIRAYAQTGHSKDKALALYGIM--LHDAILPNKFTYPFVLKACAGLEVLN 149

Query: 251 LGNWVCSLIEGHGLGSNLHVTNALIDMYSKC-GDLVKARDLFESIEKRDVISWNVMIGGY 309
           LG  V   +   G   ++HV N ++ MYS C G +  AR +F+ + K D ++W+ MIGGY
Sbjct: 150 LGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGY 209

Query: 310 THTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNN 369
                  EA+ LFR+M  + + P+++T +S+L AC  LGAL+LGKWI AYI++ H+    
Sbjct: 210 ARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIER-HEIHKP 268

Query: 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG 429
           V +  +LIDM+AKCG+I  A ++F  M  KT+ SW ++I G+AMHG+  +A  LF  M  
Sbjct: 269 VEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTS 328

Query: 430 EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489
            G+ PDD+ F+G+LSAC+H+GL++ GR+YF +M++ YK+ PK++HYGCMVD+  R GL  
Sbjct: 329 SGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRTGLVK 388

Query: 490 EAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549
           EA   ++ M ++P+  I  +L+ ACR HG  +LGE + K L++ EP +   YVLLSN+YA
Sbjct: 389 EALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHEPLHESNYVLLSNIYA 448

Query: 550 GAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDA 609
               W+    IR  +  KGMKKVPG + IE+ + ++EF+ GDK H Q K IYEM+DE+  
Sbjct: 449 KTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSHKQHKEIYEMVDEMGR 508

Query: 610 LLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGN 669
            ++KSG+ P TSEVL D++EE KE +L+ HSEKLAIA+GL+ T PGT IRIVKNLRVC +
Sbjct: 509 EMKKSGYRPSTSEVLLDINEEDKEDSLNRHSEKLAIAFGLLRTPPGTPIRIVKNLRVCSD 568

Query: 670 CHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           CHSA+K ISKI++REII RDRNRFHHFK G CSC D+W
Sbjct: 569 CHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 606



 Score =  236 bits (603), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 126/381 (33%), Positives = 216/381 (56%), Gaps = 6/381 (1%)

Query: 20  SSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGD 79
           +S  P      Q  LALL  C  +  + Q+H+ I+K GLHN    L+K   I ++    D
Sbjct: 19  ASSTPNPRAPEQNCLALLQACNALPKLTQIHTHILKLGLHNNPLVLTKFASISSLIHATD 78

Query: 80  LSYALLVFET--IREPNQVIWNNIIRGHSLSS-SPVVAIKFYVRMILSGFVPNTYTFPFI 136
            + + L       R  +  ++N +IR ++ +  S   A+  Y  M+    +PN +T+PF+
Sbjct: 79  YAASFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFV 138

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYA-QNGELESARLVFNKSSLRD 195
           LK+CA +  ++ G+ +H  V+K G + D  V  ++++MY+   G + SAR VF++    D
Sbjct: 139 LKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSD 198

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
           +V+++A+I GYA  G   +A  LF EM + E    P+E T+V++LSAC  +G+LELG W+
Sbjct: 199 SVTWSAMIGGYARVGRSTEAVALFREMQMAE--VCPDEITMVSMLSACTDLGALELGKWI 256

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
            + IE H +   + V+NALIDM++KCGD+ KA  LF ++ ++ ++SW  +I G       
Sbjct: 257 EAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRG 316

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
           +EA  LF +M  S + P+DV F+ +L AC++ G ++ G+     + K ++ +  +  +  
Sbjct: 317 QEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGC 376

Query: 376 LIDMYAKCGNIKAAEQVFDGM 396
           ++DMY + G +K A +    M
Sbjct: 377 MVDMYCRTGLVKEALEFVRNM 397



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 158/353 (44%), Gaps = 47/353 (13%)

Query: 36  LLSKCTNMQ--NIKQ-VHSQIIKTGLH---NTQFALSKLIEICAVSPFGDLSYALLVFET 89
           +L  C  ++  N+ Q VH  ++K G     + Q  +  +   CA    G ++ A  VF+ 
Sbjct: 138 VLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCA----GGINSARKVFDE 193

Query: 90  IREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG 149
           + + + V W+ +I G++       A+  +  M ++   P+  T   +L +C  + A+  G
Sbjct: 194 MPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELG 253

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           K I A++ +  +     V  +LI+M+A+ G++  A  +F   + +  VS+T++I G A  
Sbjct: 254 KWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMH 313

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
           G   +A  LF+EM        P++   + +LSAC+H G +E G                 
Sbjct: 314 GRGQEATCLFEEMT--SSGVAPDDVAFIGLLSACSHSGLVERGR---------------- 355

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
                       G ++K   L   IE      +  M+  Y  T   KEAL   R M    
Sbjct: 356 ---------EYFGSMMKKYKLVPKIEH-----YGCMVDMYCRTGLVKEALEFVRNM---P 398

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
           IEPN V   +++ AC   G   LG+ I   + K H+ L+  S +  L ++YAK
Sbjct: 399 IEPNPVILRTLVSACRGHGEFKLGEKITKLLMK-HEPLHE-SNYVLLSNIYAK 449


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 277/681 (40%), Positives = 427/681 (62%), Gaps = 12/681 (1%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALS-KLIEICAVSPFGDLSYALLVFETI 90
           A++  C+N       + ++  ++KTG       +  +LI++  V   GDL  A  VF+ +
Sbjct: 133 AVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDM-FVKGSGDLGSAYKVFDKM 191

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            E N V W  +I   +       AI  ++ M LSG+VP+ +T+  +L +C ++  ++ GK
Sbjct: 192 PERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGK 251

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQ---NGELESARLVFNKSSLRDAVSYTALITGYA 207
           Q+H+ V++LGL  D  V  SL++MYA+   +G ++ +R VF +    + +S+TA+IT Y 
Sbjct: 252 QLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYV 311

Query: 208 SRGYLD-DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS 266
             G  D +A +LF +M     +  PN  +  +VL AC ++     G  V S     G+ S
Sbjct: 312 QSGECDKEAIELFCKMI--SGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIAS 369

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML 326
              V N+LI MY++ G +  AR  F+ + +++++S+N ++ GY      +EA +LF ++ 
Sbjct: 370 VNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIA 429

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
            + I  +  TF S+L   A +GA+  G+ IH  + K   K +N  +  +LI MY++CGNI
Sbjct: 430 DTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYK-SNQCICNALISMYSRCGNI 488

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
           +AA QVF+ M  + + SW +MI+G A HG A +AL +F +M+  G +P++IT+V VLSAC
Sbjct: 489 EAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSAC 548

Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
           +H G++  G+++FN+M +++ I P+++HY CMVDLLGR+GL  EA   + +M +  DA +
Sbjct: 549 SHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALV 608

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
           W +LLGACRVHG  ELG   A+ +LE EP++P AY+LLSN++A AG+W DV  IR  + +
Sbjct: 609 WRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKE 668

Query: 567 KGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYD 626
           + + K  GCS IEV + VH F VG+  HPQ+  IY+ LD++ + +++ G++PDT  VL+D
Sbjct: 669 RNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHD 728

Query: 627 MDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREII 686
           ++EE KE  L  HSEK+A+A+GLIST     IRI KNLRVCG+CH+A K IS    REI+
Sbjct: 729 IEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIV 788

Query: 687 ARDRNRFHHFKDGNCSCNDYW 707
            RD NRFHH K+G CSCNDYW
Sbjct: 789 VRDSNRFHHIKNGVCSCNDYW 809



 Score =  215 bits (547), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 155/495 (31%), Positives = 261/495 (52%), Gaps = 21/495 (4%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LL  C   +N    K VH +++++GL      L+ LI +   S  GD   A L+FE +  
Sbjct: 32  LLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISL--YSKCGDTETARLIFEGMGN 89

Query: 93  PNQVI-WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
              ++ W+ ++   + +S    AI  ++ M+  GF PN Y F  ++++C+  +    G+ 
Sbjct: 90  KRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEI 149

Query: 152 IHAHVLKLG-LESDPFVHTSLINMYAQ-NGELESARLVFNKSSLRDAVSYTALITGYASR 209
           I+  V+K G LE+D  V   LI+M+ + +G+L SA  VF+K   R+ V++T +IT +A  
Sbjct: 150 IYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQL 209

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
           G   DA  LF +M +    +VP+  T  +VLSAC  +G L LG  + S +   GL  ++ 
Sbjct: 210 GCARDAIDLFLDMEL--SGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVC 267

Query: 270 VTNALIDMYSKC---GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY-KEALMLFRQM 325
           V  +L+DMY+KC   G +  +R +FE + + +V+SW  +I  Y  + +  KEA+ LF +M
Sbjct: 268 VGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKM 327

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK-NHQKLNNVSLWTSLIDMYAKCG 384
           +  +I PN  +F SVL AC  L     G+ +++Y  K     +N V    SLI MYA+ G
Sbjct: 328 ISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVG--NSLISMYARSG 385

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
            ++ A + FD +  K L S+NA++ G A + K+++A  LF+ +   G+     TF  +LS
Sbjct: 386 RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS 445

Query: 445 ACNHAGLLDIGRQYFNAMIQ-DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
                G +  G Q    +++  YK +  + +   ++ +  R G  + A  +   ME + +
Sbjct: 446 GAASIGAMGKGEQIHGRLLKGGYKSNQCICN--ALISMYSRCGNIEAAFQVFNEMEDR-N 502

Query: 504 AAIWTSLLGACRVHG 518
              WTS++     HG
Sbjct: 503 VISWTSMITGFAKHG 517



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/376 (30%), Positives = 198/376 (52%), Gaps = 19/376 (5%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P+  T+  +LKSC +      GK +H  +++ GLE D  V  +LI++Y++ G+ E+ARL+
Sbjct: 24  PDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLI 83

Query: 188 FNK-SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHM 246
           F    + RD VS++A+++ +A+      A   F +M   E  F PNE     V+ AC++ 
Sbjct: 84  FEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDML--ELGFYPNEYCFAAVIRACSNA 141

Query: 247 GSLELGNWVCSLIEGHG-LGSNLHVTNALIDMYSK-CGDLVKARDLFESIEKRDVISWNV 304
               +G  +   +   G L +++ V   LIDM+ K  GDL  A  +F+ + +R++++W +
Sbjct: 142 NYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTL 201

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           MI  +      ++A+ LF  M  S   P+  T+ SVL AC  LG L LGK +H+ + +  
Sbjct: 202 MITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLG 261

Query: 365 QKLNNVSLWTSLIDMYAKC---GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADK-A 420
             L +V +  SL+DMYAKC   G++  + +VF+ M    + SW A+I+     G+ DK A
Sbjct: 262 LAL-DVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEA 320

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC--- 477
           + LF +MI   ++P+  +F  VL AC      ++   Y    +  Y +   +    C   
Sbjct: 321 IELFCKMISGHIRPNHFSFSSVLKACG-----NLSDPYTGEQVYSYAVKLGIASVNCVGN 375

Query: 478 -MVDLLGRAGLFDEAE 492
            ++ +  R+G  ++A 
Sbjct: 376 SLISMYARSGRMEDAR 391



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 156/310 (50%), Gaps = 11/310 (3%)

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
           G L  A    D M   ++N  P+ +T   +L +C    + +LG  V   +   GL  +  
Sbjct: 5   GRLHHAFSTLDLMT--QQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSV 62

Query: 270 VTNALIDMYSKCGDLVKARDLFESI-EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
           V N LI +YSKCGD   AR +FE +  KRD++SW+ M+  + + S   +A+  F  ML+ 
Sbjct: 63  VLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLEL 122

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK-CGNIK 387
              PN+  F +V+ AC+      +G+ I+ ++ K      +V +   LIDM+ K  G++ 
Sbjct: 123 GFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLG 182

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
           +A +VFD M  + L +W  MI+  A  G A  A+ LF  M   G  PD  T+  VLSAC 
Sbjct: 183 SAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACT 242

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQ-HYGC-MVDLLGRAGLFDEAEALLKTMEMKPDAA 505
             GLL +G+Q  + +I   ++   L    GC +VD+  +       +   K  E  P+  
Sbjct: 243 ELGLLALGKQLHSRVI---RLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHN 299

Query: 506 I--WTSLLGA 513
           +  WT+++ A
Sbjct: 300 VMSWTAIITA 309


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 277/681 (40%), Positives = 427/681 (62%), Gaps = 12/681 (1%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALS-KLIEICAVSPFGDLSYALLVFETI 90
           A++  C+N       + ++  ++KTG       +  +LI++  V   GDL  A  VF+ +
Sbjct: 151 AVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDM-FVKGSGDLGSAYKVFDKM 209

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            E N V W  +I   +       AI  ++ M LSG+VP+ +T+  +L +C ++  ++ GK
Sbjct: 210 PERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGK 269

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQ---NGELESARLVFNKSSLRDAVSYTALITGYA 207
           Q+H+ V++LGL  D  V  SL++MYA+   +G ++ +R VF +    + +S+TA+IT Y 
Sbjct: 270 QLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYV 329

Query: 208 SRGYLD-DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS 266
             G  D +A +LF +M     +  PN  +  +VL AC ++     G  V S     G+ S
Sbjct: 330 QSGECDKEAIELFCKMI--SGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIAS 387

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML 326
              V N+LI MY++ G +  AR  F+ + +++++S+N ++ GY      +EA +LF ++ 
Sbjct: 388 VNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIA 447

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
            + I  +  TF S+L   A +GA+  G+ IH  + K   K +N  +  +LI MY++CGNI
Sbjct: 448 DTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYK-SNQCICNALISMYSRCGNI 506

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
           +AA QVF+ M  + + SW +MI+G A HG A +AL +F +M+  G +P++IT+V VLSAC
Sbjct: 507 EAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSAC 566

Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
           +H G++  G+++FN+M +++ I P+++HY CMVDLLGR+GL  EA   + +M +  DA +
Sbjct: 567 SHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALV 626

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
           W +LLGACRVHG  ELG   A+ +LE EP++P AY+LLSN++A AG+W DV  IR  + +
Sbjct: 627 WRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKE 686

Query: 567 KGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYD 626
           + + K  GCS IEV + VH F VG+  HPQ+  IY+ LD++ + +++ G++PDT  VL+D
Sbjct: 687 RNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHD 746

Query: 627 MDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREII 686
           ++EE KE  L  HSEK+A+A+GLIST     IRI KNLRVCG+CH+A K IS    REI+
Sbjct: 747 IEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIV 806

Query: 687 ARDRNRFHHFKDGNCSCNDYW 707
            RD NRFHH K+G CSCNDYW
Sbjct: 807 VRDSNRFHHIKNGVCSCNDYW 827



 Score =  215 bits (547), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 155/495 (31%), Positives = 261/495 (52%), Gaps = 21/495 (4%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LL  C   +N    K VH +++++GL      L+ LI +   S  GD   A L+FE +  
Sbjct: 50  LLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISL--YSKCGDTETARLIFEGMGN 107

Query: 93  PNQVI-WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
              ++ W+ ++   + +S    AI  ++ M+  GF PN Y F  ++++C+  +    G+ 
Sbjct: 108 KRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEI 167

Query: 152 IHAHVLKLG-LESDPFVHTSLINMYAQ-NGELESARLVFNKSSLRDAVSYTALITGYASR 209
           I+  V+K G LE+D  V   LI+M+ + +G+L SA  VF+K   R+ V++T +IT +A  
Sbjct: 168 IYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQL 227

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
           G   DA  LF +M +    +VP+  T  +VLSAC  +G L LG  + S +   GL  ++ 
Sbjct: 228 GCARDAIDLFLDMEL--SGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVC 285

Query: 270 VTNALIDMYSKC---GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY-KEALMLFRQM 325
           V  +L+DMY+KC   G +  +R +FE + + +V+SW  +I  Y  + +  KEA+ LF +M
Sbjct: 286 VGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKM 345

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK-NHQKLNNVSLWTSLIDMYAKCG 384
           +  +I PN  +F SVL AC  L     G+ +++Y  K     +N V    SLI MYA+ G
Sbjct: 346 ISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVG--NSLISMYARSG 403

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
            ++ A + FD +  K L S+NA++ G A + K+++A  LF+ +   G+     TF  +LS
Sbjct: 404 RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS 463

Query: 445 ACNHAGLLDIGRQYFNAMIQ-DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
                G +  G Q    +++  YK +  + +   ++ +  R G  + A  +   ME + +
Sbjct: 464 GAASIGAMGKGEQIHGRLLKGGYKSNQCICN--ALISMYSRCGNIEAAFQVFNEMEDR-N 520

Query: 504 AAIWTSLLGACRVHG 518
              WTS++     HG
Sbjct: 521 VISWTSMITGFAKHG 535



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/376 (30%), Positives = 198/376 (52%), Gaps = 19/376 (5%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P+  T+  +LKSC +      GK +H  +++ GLE D  V  +LI++Y++ G+ E+ARL+
Sbjct: 42  PDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLI 101

Query: 188 FNK-SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHM 246
           F    + RD VS++A+++ +A+      A   F +M   E  F PNE     V+ AC++ 
Sbjct: 102 FEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDML--ELGFYPNEYCFAAVIRACSNA 159

Query: 247 GSLELGNWVCSLIEGHG-LGSNLHVTNALIDMYSK-CGDLVKARDLFESIEKRDVISWNV 304
               +G  +   +   G L +++ V   LIDM+ K  GDL  A  +F+ + +R++++W +
Sbjct: 160 NYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTL 219

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           MI  +      ++A+ LF  M  S   P+  T+ SVL AC  LG L LGK +H+ + +  
Sbjct: 220 MITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLG 279

Query: 365 QKLNNVSLWTSLIDMYAKC---GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADK-A 420
             L +V +  SL+DMYAKC   G++  + +VF+ M    + SW A+I+     G+ DK A
Sbjct: 280 LAL-DVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEA 338

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC--- 477
           + LF +MI   ++P+  +F  VL AC      ++   Y    +  Y +   +    C   
Sbjct: 339 IELFCKMISGHIRPNHFSFSSVLKACG-----NLSDPYTGEQVYSYAVKLGIASVNCVGN 393

Query: 478 -MVDLLGRAGLFDEAE 492
            ++ +  R+G  ++A 
Sbjct: 394 SLISMYARSGRMEDAR 409



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 156/310 (50%), Gaps = 11/310 (3%)

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
           G L  A    D M   ++N  P+ +T   +L +C    + +LG  V   +   GL  +  
Sbjct: 23  GRLHHAFSTLDLMT--QQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSV 80

Query: 270 VTNALIDMYSKCGDLVKARDLFESI-EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
           V N LI +YSKCGD   AR +FE +  KRD++SW+ M+  + + S   +A+  F  ML+ 
Sbjct: 81  VLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLEL 140

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK-CGNIK 387
              PN+  F +V+ AC+      +G+ I+ ++ K      +V +   LIDM+ K  G++ 
Sbjct: 141 GFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLG 200

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
           +A +VFD M  + L +W  MI+  A  G A  A+ LF  M   G  PD  T+  VLSAC 
Sbjct: 201 SAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACT 260

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQ-HYGC-MVDLLGRAGLFDEAEALLKTMEMKPDAA 505
             GLL +G+Q  + +I   ++   L    GC +VD+  +       +   K  E  P+  
Sbjct: 261 ELGLLALGKQLHSRVI---RLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHN 317

Query: 506 I--WTSLLGA 513
           +  WT+++ A
Sbjct: 318 VMSWTAIITA 327


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 276/706 (39%), Positives = 407/706 (57%), Gaps = 39/706 (5%)

Query: 36  LLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +LS CT    +    QVH  I+K G     F  + LI        G++     VF+ + E
Sbjct: 145 VLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHF--YGECGEIDCMRRVFDKMSE 202

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            N V W ++I G++       A+  +  M+  G  PN+ T   ++ +CAK+  +  G+Q+
Sbjct: 203 RNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQV 262

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
              + +L LE +  +  +L++MY + G ++ AR +F++   ++ V Y  +++ Y  +G  
Sbjct: 263 CTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLA 322

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
            +   +  EM   +    P+  T+++ +SAC+ +  +  G W    +  +GL    +V N
Sbjct: 323 REVLAVLGEM--LKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCN 380

Query: 273 ALIDMYSKCG-------------------------------DLVKARDLFESIEKRDVIS 301
           A+I+MY KCG                               D+  A  +F ++   D++S
Sbjct: 381 AIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVS 440

Query: 302 WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361
           WN MIG     S +KEA+ LFR M    I  + VT + V  AC YLGALDL KWIH YI 
Sbjct: 441 WNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIK 500

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421
           K     + + L T+L+DM+A+CG+ ++A QVF+ M  + +++W A I  +AM G    A+
Sbjct: 501 KKDIHFD-MHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAI 559

Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481
            LF  M+ +G++PD + FV +L+A +H GL++ G   F +M   Y I+P+  HYGCMVDL
Sbjct: 560 ELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDL 619

Query: 482 LGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541
           LGRAGL  EA +L+ +M+M+P+  IW SLL ACRVH  +++    A+ + EL+PE  G +
Sbjct: 620 LGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELDPERTGIH 679

Query: 542 VLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIY 601
           VLLSN+YA AGRWDDVA +R  L +KG  K+PG SSIE+   + EF  GD+ HP+  HI 
Sbjct: 680 VLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPEMTHIE 739

Query: 602 EMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIV 661
            ML EI   L   G+VPD + VL D++E+ KE  LS HSEKLAIA+ LIST  G  IR+ 
Sbjct: 740 PMLKEICCRLRDIGYVPDLTNVLLDVNEKEKEYLLSRHSEKLAIAFALISTGQGMPIRVA 799

Query: 662 KNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           KNLR+C +CHS  KL+SK ++REII RD NRFH F+ G CSC DYW
Sbjct: 800 KNLRICSDCHSFAKLVSKSYSREIIVRDNNRFHFFQQGFCSCGDYW 845



 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 188/547 (34%), Positives = 286/547 (52%), Gaps = 55/547 (10%)

Query: 21  SDPPYKLLQNQPSLALLSK-----------CTNMQNIKQVHSQIIKTGLHNTQFALSKLI 69
           + P    L NQ  L +L+K           C  M  +KQ+HSQI K GL++   +L+ LI
Sbjct: 13  ATPTSVALPNQNELKILTKHRSSPTGSFKKCKTMTELKQLHSQITKNGLNHHPLSLTNLI 72

Query: 70  EICA-VSPFGDLSYALLVFETIREPNQVI-----WNNIIRGHSLSSSPVVAIKFYVRMIL 123
             C  +  F  L YA    E   E N ++     ++++IRG S       AI  + +++ 
Sbjct: 73  SSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMC 132

Query: 124 SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELES 183
            G VP+ +TFPF+L +C K +A++EG Q+H  ++K+G E D FV  SLI+ Y + GE++ 
Sbjct: 133 MGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDC 192

Query: 184 ARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC 243
            R VF+K S R+ VS+T+LI GYA RG   +A  LF EM   E    PN  T+V V+SAC
Sbjct: 193 MRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMV--EVGIRPNSVTMVGVISAC 250

Query: 244 AHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN 303
           A +  L+LG  VC+ I    L  N  + NAL+DMY KCG + KAR +F+    ++++ +N
Sbjct: 251 AKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYN 310

Query: 304 VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363
            ++  Y      +E L +  +ML+    P+ +T LS + AC+ L  +  GKW H Y+ +N
Sbjct: 311 TIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRN 370

Query: 364 H-QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALS 422
             +  +NV    ++I+MY KCG  + A +VFD M  KT  SWN++I+G   +G  + A  
Sbjct: 371 GLEGWDNVC--NAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWK 428

Query: 423 LFS-----------RMIG--------------------EGLQPDDITFVGVLSACNHAGL 451
           +FS            MIG                    EG+  D +T VGV SAC + G 
Sbjct: 429 IFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGA 488

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           LD+ + + +  I+   I   +     +VD+  R G    A  +   M +K D + WT+ +
Sbjct: 489 LDLAK-WIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKM-VKRDVSAWTAAI 546

Query: 512 GACRVHG 518
           GA  + G
Sbjct: 547 GAMAMEG 553



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 110/261 (42%), Gaps = 49/261 (18%)

Query: 354 KWIHAYIDKN---HQKLNNVSLWTSLIDM-------YAKCGNIKAAEQVFDGMG-YKTLA 402
           K +H+ I KN   H  L+  +L +S  +M       YA+    KA E   +  G   T  
Sbjct: 50  KQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQ----KALELFIEDNGIMGTHY 105

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
            ++++I G +  G   KA+ +F +++  G  PD+ TF  VLSAC  +  L  G Q   A+
Sbjct: 106 MFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAI 165

Query: 463 IQ-----DYKISPKLQH-YG------CM---------------VDLLG---RAGLFDEAE 492
           ++     D  +   L H YG      CM                 L+G   + G + EA 
Sbjct: 166 VKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAV 225

Query: 493 ALLKTM---EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV-LLSNMY 548
           +L   M    ++P++     ++ AC     L+LGE V   + ELE E     V  L +MY
Sbjct: 226 SLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMY 285

Query: 549 AGAGRWDDVATIRTRLNDKGM 569
              G  D    I     DK +
Sbjct: 286 MKCGAIDKARKIFDECVDKNL 306


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 296/704 (42%), Positives = 415/704 (58%), Gaps = 86/704 (12%)

Query: 6   SSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFAL 65
           SS++ +P+ L  PPS         N   L+L + C  ++++KQVH+QII    HN+ F L
Sbjct: 52  SSMSRTPNPLTNPPS---------NPQILSLFNPCKTLRHLKQVHAQIITH--HNSPFQL 100

Query: 66  SKLIEICAVSPFGD-LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILS 124
           S L  + A+SPF   L+YA  +F  ++ P   ++N++IR  S S +P+ A+  Y  M+ S
Sbjct: 101 SALASLSALSPFPTFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQS 160

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
           G  P+  T+PF++K+C + S    G  +H HV+K G E D ++ +SLI++          
Sbjct: 161 GLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHL---------- 210

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
                                YA+   L  A+QLF+    R+         VV+      
Sbjct: 211 ---------------------YANGKDLGAAKQLFNLCSARD---------VVS------ 234

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
                    W                 NA+ID Y K  ++  AR +F+ +  RDVISWN 
Sbjct: 235 ---------W-----------------NAMIDGYVKHVEMGHARMVFDRMVCRDVISWNT 268

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           MI GY       EAL LF QM    ++P + T +S+L ACA+LGALD G  +H YI+ N 
Sbjct: 269 MINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNR 328

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF 424
            ++N++ + T+L+DMYAKCG I  A QVF+ M  K + +WN +I+G+A+HG   +A  LF
Sbjct: 329 IEVNSI-VGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLF 387

Query: 425 SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484
             M   G++P+DITFV +LSAC+HAG++D G++  + M   Y I PK++HYGC++DLL R
Sbjct: 388 KEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLAR 447

Query: 485 AGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL 544
           AG  +EA  L+ TM M+P+ +   +LLG CR+HG  ELGE V K L+ L+P + G Y+LL
Sbjct: 448 AGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILL 507

Query: 545 SNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEML 604
           SN+YA A +WDD   +R  +   G+ KVPG S IE+  +VH F+ GD  HP+S  IYE L
Sbjct: 508 SNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKL 567

Query: 605 DEIDALLEKS-GFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKN 663
           +EI   L+ + G+  DT  VL DM+EE KE AL+ HSEKLAIAYGL+       IRIVKN
Sbjct: 568 NEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKN 627

Query: 664 LRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           LRVC +CH   KLISK++ REII RDRNRFHHF+DG CSC D+W
Sbjct: 628 LRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 671


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  533 bits (1373), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 263/659 (39%), Positives = 405/659 (61%), Gaps = 39/659 (5%)

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           +L +F TI  P  + W ++IR ++    P  ++  ++ M+ SG  P+   FP +LKSCA 
Sbjct: 59  SLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCAL 118

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ-------------NGEL-------- 181
           +  ++ G+ +H +++++GL+ D +   +L+NMY++              GE+        
Sbjct: 119 LMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERT 178

Query: 182 -----------ESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV 230
                      +S R +F     +D VS+  +I G A  G  ++  ++  EM     N  
Sbjct: 179 RSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMG--GANLK 236

Query: 231 PNESTVVTVLSACAHMGSLELGNWV--CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288
           P+  T+ +VL   A    +  G  +  CS+ +G  L ++++V ++LIDMY+KC  +  + 
Sbjct: 237 PDSFTLSSVLPLIAENVDISRGKEIHGCSIRQG--LDADIYVASSLIDMYAKCTRVADSC 294

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
            +F  + +RD ISWN +I G      + E L  FRQML + I+P   +F S++PACA+L 
Sbjct: 295 RVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLT 354

Query: 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI 408
            L LGK +H YI +N     N+ + +SL+DMYAKCGNI+ A+Q+FD M  + + SW AMI
Sbjct: 355 TLHLGKQLHGYITRNGFD-ENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMI 413

Query: 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
            G A+HG+A  A+ LF +M  EG++P+ + F+ VL+AC+H GL+D   +YFN+M +D+ I
Sbjct: 414 MGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGI 473

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
           +P ++HY  + DLLGRAG  +EA   +  M + P  +IW +LL ACRVH  +++ E VA 
Sbjct: 474 APGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVAN 533

Query: 529 HLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFL 588
            +LE++P N GAY+LL+N+Y+ A RW + A  R  +   G++K P CS IEV + V+ F+
Sbjct: 534 RILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFM 593

Query: 589 VGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYG 648
            GD+ HP  + I E ++ +  L+EK G+VPDTSEV +D++EE K+  +  HSE+LAI +G
Sbjct: 594 AGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFG 653

Query: 649 LISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +I+T  G TIR+ KNLRVC +CH+ATK ISKI  REI+ RD +RFHHFK+G CSC DYW
Sbjct: 654 IINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 712



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 198/417 (47%), Gaps = 40/417 (9%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           +L++   I + S+ +Q+HA VLK    S     + L+++Y+    L  +  +FN      
Sbjct: 12  LLRNPLSIKSRSQAQQLHAQVLKFQ-ASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPP 70

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
           A+++ ++I  Y S G    +   F  + +      P+ +   +VL +CA +  L LG  +
Sbjct: 71  ALAWKSVIRCYTSHGLPHQSLGSF--IGMLASGLYPDHNVFPSVLKSCALLMDLNLGESL 128

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA---------------------------- 287
              I   GL  +L+  NAL++MYSK   L ++                            
Sbjct: 129 HGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLS 188

Query: 288 ----RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
               R +FE + ++D++SWN +I G      Y+E L + R+M  +N++P+  T  SVLP 
Sbjct: 189 EDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPL 248

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLN-NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
            A    +  GK IH    +  Q L+ ++ + +SLIDMYAKC  +  + +VF  +  +   
Sbjct: 249 IAENVDISRGKEIHGCSIR--QGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGI 306

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           SWN++I+G   +G  D+ L  F +M+   ++P   +F  ++ AC H   L +G+Q  +  
Sbjct: 307 SWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQ-LHGY 365

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
           I        +     +VD+  + G    A+ +   M ++ D   WT+++  C +HG+
Sbjct: 366 ITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGCALHGQ 421



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 142/258 (55%), Gaps = 5/258 (1%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L L+++  ++   K++H   I+ GL    +  S LI++ A      ++ +  VF  + E 
Sbjct: 246 LPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCT--RVADSCRVFTLLTER 303

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           + + WN+II G   +      ++F+ +M+++   P +Y+F  I+ +CA ++ +  GKQ+H
Sbjct: 304 DGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLH 363

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
            ++ + G + + F+ +SL++MYA+ G + +A+ +F++  LRD VS+TA+I G A  G   
Sbjct: 364 GYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAP 423

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL-ELGNWVCSLIEGHGLGSNLHVTN 272
           DA +LF++M    E   PN    + VL+AC+H G + E   +  S+    G+   +    
Sbjct: 424 DAIELFEQM--ETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYA 481

Query: 273 ALIDMYSKCGDLVKARDL 290
           A+ D+  + G L +A D 
Sbjct: 482 AVSDLLGRAGRLEEAYDF 499


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  533 bits (1373), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 270/607 (44%), Positives = 396/607 (65%), Gaps = 11/607 (1%)

Query: 19  PSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLH-NTQFALS-KLIEICAVSP 76
           P    P+KL      L+ L  C +++ +KQ+H+ IIKT    + Q  +S +L  +CA S 
Sbjct: 15  PHDFNPHKL----SFLSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSL 70

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVV-AIKFYVRMILSGFVPNTYTFPF 135
             D  YAL +   +R PN  ++N IIRG + S++  +  +  Y +M+  G VP+ YT PF
Sbjct: 71  PIDPRYALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPF 130

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           +LK+CA+  A+ EG+++H   +K+GL SD +V  +L+ MYA    + SAR VF+ S  RD
Sbjct: 131 VLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRD 190

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
            VS+T +I GY   G+  +   LF EM    EN   +  T+V VLS+CA +G L LG  +
Sbjct: 191 LVSWTTMIQGYVKMGFAREGVGLFFEMC--GENLQADGMTLVIVLSSCARLGDLRLGRKL 248

Query: 256 CS-LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
              +I    +  ++ V NAL+DMY KCGD   AR +F+ +  ++V+SWN MI G      
Sbjct: 249 HRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQ 308

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
           +KE+L +FR+M +  ++P+DVT ++VL +CA LG L+LGKW+HAY+D+N  + +   +  
Sbjct: 309 FKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGF-IGN 367

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
           +L+DMYAKCG+I  A  VF  M  K + S+ AMI GLAMHG+  KAL LFS M   G++P
Sbjct: 368 ALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEP 427

Query: 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494
           D++TFVGVL+AC+H GL++ GR+YF  M   Y + P+L+HYGCMVDLLGRAGL +EAE  
Sbjct: 428 DEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEF 487

Query: 495 LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554
           ++ M ++PDA +  +LLGAC++HG++ELGESV K + ++EP   GAYVL+SN+Y+ A RW
Sbjct: 488 IRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRW 547

Query: 555 DDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKS 614
            D   +R  + ++ ++K PGCSSIE+  V+HEF  GDK HP+ K IY++LDEI + L+ +
Sbjct: 548 RDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHLKNN 607

Query: 615 GFVPDTS 621
             +  TS
Sbjct: 608 ECLTRTS 614


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 285/717 (39%), Positives = 413/717 (57%), Gaps = 63/717 (8%)

Query: 50  HSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI--REPNQVI-WNNIIRGHS 106
           H  I   G  +  F  + L+ +   S  G L  A ++F+ I  R  + VI WN+I+  H 
Sbjct: 178 HGLICCNGFESNVFICNALVAM--YSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHV 235

Query: 107 LSSSPVVAIKFYVRMIL------SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG 160
            SS+   A+  + +M L      +    +  +   IL +C  + A+ + K++H + ++ G
Sbjct: 236 KSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNG 295

Query: 161 LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD 220
              D FV  +LI+ YA+ G +E+A  VFN    +D VS+ A++ GY+  G  + A +LF 
Sbjct: 296 TFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFK 355

Query: 221 EMPIREENF-----------------------------------VPNESTVVTVLSACAH 245
            M  R+EN                                    +PN  T+++VLSACA 
Sbjct: 356 NM--RKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACAS 413

Query: 246 MGSLELGNWV-------CSLIEGHGLGS---NLHVTNALIDMYSKCGDLVKARDLFESI- 294
           +G+   G  +       C L   +  G    +L V NALIDMYSKC     AR +F+ I 
Sbjct: 414 LGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIP 473

Query: 295 -EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS--NIEPNDVTFLSVLPACAYLGALD 351
            E+R+V++W VMIGG+    D  +AL LF +M+     + PN  T   +L ACA+L A+ 
Sbjct: 474 LEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIR 533

Query: 352 LGKWIHAYIDKNHQKLNNVSLWTS-LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISG 410
           +GK IHAY+ ++H+  ++     + LIDMY+KCG++  A  VFD M  K+  SW +M++G
Sbjct: 534 IGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTG 593

Query: 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470
             MHG+  +AL +F +M   G  PDDITF+ VL AC+H G++D G  YF++M  DY ++P
Sbjct: 594 YGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTP 653

Query: 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHL 530
           + +HY C +DLL R+G  D+A   +K M M+P A +W +LL ACRVH  +EL E     L
Sbjct: 654 RAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKL 713

Query: 531 LELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVG 590
           +E+  EN G+Y L+SN+YA AGRW DVA IR  +   G+KK PGCS ++       F VG
Sbjct: 714 VEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVG 773

Query: 591 DKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLI 650
           D+ HP S  IY +L+ +   ++  G+VP+T+  L+D+DEE K   L  HSEKLA+AYGL+
Sbjct: 774 DRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLL 833

Query: 651 STKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +T PG  IRI KNLRVCG+CHSA   ISKI + EI+ RD +RFHHFK+G+CSC  YW
Sbjct: 834 TTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 890



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 166/559 (29%), Positives = 266/559 (47%), Gaps = 75/559 (13%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTG---------------LHNTQFALSKLIEICAVSPF-- 77
           +LL +C +   + Q+H QII +G               L +  F   + +    V+ +  
Sbjct: 42  SLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVASYLA 101

Query: 78  -GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
            G   YALLV E +     V WN +IR H        AI    RM+ +G  P+ +T P +
Sbjct: 102 CGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHV 161

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-- 194
           LK+C ++ +   G   H  +   G ES+ F+  +L+ MY++ G LE A ++F++ + R  
Sbjct: 162 LKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGI 221

Query: 195 -DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNES----TVVTVLSACAHMGSL 249
            D +S+ ++++ +        A  LF +M +       NE     ++V +L AC  + ++
Sbjct: 222 DDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAV 281

Query: 250 ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309
                V      +G   ++ V NALID Y+KCG +  A  +F  +E +DV+SWN M+ GY
Sbjct: 282 PQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGY 341

Query: 310 THTSDYK-----------------------------------EALMLFRQMLQSNIEPND 334
           + + +++                                   EAL LFRQM+ S   PN 
Sbjct: 342 SQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNC 401

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNH-QKLNN--------VSLWTSLIDMYAKCGN 385
           VT +SVL ACA LGA   G  IHAY  KN    L+N        + ++ +LIDMY+KC +
Sbjct: 402 VTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRS 461

Query: 386 IKAAEQVFDGMGY--KTLASWNAMISGLAMHGKADKALSLFSRMIGE--GLQPDDITFVG 441
            KAA  +FD +    + + +W  MI G A +G ++ AL LF  MI E  G+ P+  T   
Sbjct: 462 FKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISC 521

Query: 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG-CMVDLLGRAGLFDEAEALLKTMEM 500
           +L AC H   + IG+Q    +++ ++          C++D+  + G  D A  +  +M  
Sbjct: 522 ILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQ 581

Query: 501 KPDAAIWTSLLGACRVHGR 519
           K  A  WTS++    +HGR
Sbjct: 582 K-SAISWTSMMTGYGMHGR 599



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 116/268 (43%), Gaps = 12/268 (4%)

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
             ++  Y  CG    A  + E +     + WN++I  +        A+ +  +ML++   
Sbjct: 93  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 152

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+  T   VL AC  L +   G   H  I  N  + +NV +  +L+ MY++CG+++ A  
Sbjct: 153 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFE-SNVFICNALVAMYSRCGSLEEASM 211

Query: 392 VFDGM---GYKTLASWNAMISGLAMHGKADKALSLFSRMI------GEGLQPDDITFVGV 442
           +FD +   G   + SWN+++S       A  AL LFS+M           + D I+ V +
Sbjct: 212 IFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNI 271

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
           L AC     +   ++     I++    P +     ++D   + GL + A  +   ME K 
Sbjct: 272 LPACGSLKAVPQTKEVHGNAIRNGTF-PDVFVGNALIDAYAKCGLMENAVKVFNMMEFK- 329

Query: 503 DAAIWTSLLGACRVHGRLELGESVAKHL 530
           D   W +++      G  E    + K++
Sbjct: 330 DVVSWNAMVAGYSQSGNFEAAFELFKNM 357


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 279/675 (41%), Positives = 403/675 (59%), Gaps = 6/675 (0%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +++ CT  +++   +QVH  +++TG     F  + L+++   S  GD+  A  VFE +  
Sbjct: 211 VVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDM--YSKLGDIEMAATVFEKMPA 268

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V WN  I G         A++  ++M  SG VPN +T   +LK+CA   A + G+QI
Sbjct: 269 ADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQI 328

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H  ++K   + D FV   L++MYA++G L+ AR VF+    RD + + ALI+G +  G  
Sbjct: 329 HGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRH 388

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
            +   LF  M     +   N +T+ +VL + A   ++     V +L E  GL S+ HV N
Sbjct: 389 GEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVIN 448

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            LID Y KCG L  A  +F+     D+IS   M+   +     ++A+ LF QML+  +EP
Sbjct: 449 GLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEP 508

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           +     S+L AC  L A + GK +HA++ K  Q  ++V    +L+  YAKCG+I+ A+  
Sbjct: 509 DSFVLSSLLNACTSLSAYEQGKQVHAHLIKR-QFTSDVFAGNALVYAYAKCGSIEDADMA 567

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F G+  + + SW+AMI GLA HG   +AL LF RM+ EG+ P+ IT   VLSACNHAGL+
Sbjct: 568 FSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLV 627

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           D  ++YF +M + + I    +HY CM+D+LGRAG  ++A  L+  M  + +AA+W +LLG
Sbjct: 628 DDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLG 687

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           A RVH   ELG   A+ L  LEPE  G +VLL+N YA AG WD++A +R  + D  +KK 
Sbjct: 688 ASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKE 747

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
           P  S +E+   VH F+VGDK HP ++ IY  L E+  L+ K+G+VP+    L+D+D   K
Sbjct: 748 PAMSWVEIKDKVHTFIVGDKSHPMTRDIYGKLAELGDLMNKAGYVPNVEVDLHDVDRSEK 807

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
           E  LSHHSE+LA+A+ LIST  G  IR+ KNLR+C +CH A K ISKI +REII RD NR
Sbjct: 808 ELLLSHHSERLAVAFALISTPSGAPIRVKKNLRICRDCHVAFKYISKIVSREIIIRDINR 867

Query: 693 FHHFKDGNCSCNDYW 707
           FHHF +G CSC DYW
Sbjct: 868 FHHFTNGTCSCGDYW 882



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 178/564 (31%), Positives = 261/564 (46%), Gaps = 54/564 (9%)

Query: 48  QVHSQIIKTGL-HNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
            +HS ++K+GL       L  L   C +      S A  VF+ I +P  V W++++  +S
Sbjct: 25  HLHSHLLKSGLLAGFSNHLLTLYSRCRLP-----SAARAVFDEIPDPCHVSWSSLVTAYS 79

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +  P  A+  +  M   G   N +  P +LK CA    +  G Q+HA  +   L  D F
Sbjct: 80  NNGMPRDALLAFRAMRGRGVPCNEFALPVVLK-CAP--DVRFGAQVHALAVATRLVHDVF 136

Query: 167 VHTSLINMYAQNGELESARLVFNK----SSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
           V  +L+ +Y   G ++ AR +F++       R+AVS+  +I+ Y       DA  +F EM
Sbjct: 137 VANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREM 196

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
               E   PNE     V++AC     LE G  V   +   G   ++   NAL+DMYSK G
Sbjct: 197 VWSGER--PNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLG 254

Query: 283 DLVKARDLFESIEKRDVISWNVMIGG-YTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
           D+  A  +FE +   DV+SWN  I G  TH  D++ AL L  QM  S + PN  T  SVL
Sbjct: 255 DIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHR-ALELLLQMKSSGLVPNVFTLSSVL 313

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
            ACA  GA +LG+ IH ++ K     +   +   L+DMYAK G +  A +VFD M  + L
Sbjct: 314 KACAGAGAFNLGRQIHGFMVKAVADFDEF-VAVGLVDMYAKHGFLDDARKVFDFMPRRDL 372

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD--DITFVGVLSA-------CN----H 448
             WNA+ISG +  G+  + LSLF RM  EGL  D    T   VL +       C+    H
Sbjct: 373 ILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVH 432

Query: 449 AGLLDIG----RQYFNAMIQ--------DYKI-------SPKLQHYGCMVDLLGRAGLFD 489
           A    IG        N +I         DY I       S  +     M+  L +    +
Sbjct: 433 ALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGE 492

Query: 490 EAEALLKTM---EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE-PENPGAYVLLS 545
           +A  L   M    ++PD+ + +SLL AC      E G+ V  HL++ +   +  A   L 
Sbjct: 493 DAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALV 552

Query: 546 NMYAGAGRWDDVATIRTRLNDKGM 569
             YA  G  +D     + L ++G+
Sbjct: 553 YAYAKCGSIEDADMAFSGLPERGI 576



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 123/395 (31%), Positives = 196/395 (49%), Gaps = 20/395 (5%)

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           G  +H+H+LK GL +    H  L+ +Y++     +AR VF++      VS+++L+T Y++
Sbjct: 23  GAHLHSHLLKSGLLAGFSNH--LLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSN 80

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
            G   DA   F  M  R    VP     + V+  CA    +  G  V +L     L  ++
Sbjct: 81  NGMPRDALLAFRAMRGRG---VPCNEFALPVVLKCA--PDVRFGAQVHALAVATRLVHDV 135

Query: 269 HVTNALIDMYSKCGDLVKARDLFESI----EKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
            V NAL+ +Y   G + +AR +F+       +R+ +SWN MI  Y       +A+ +FR+
Sbjct: 136 FVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFRE 195

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH-AYIDKNHQKLNNVSLWTSLIDMYAKC 383
           M+ S   PN+  F  V+ AC     L+ G+ +H A +   ++K  +V    +L+DMY+K 
Sbjct: 196 MVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEK--DVFTANALVDMYSKL 253

Query: 384 GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
           G+I+ A  VF+ M    + SWNA ISG   HG   +AL L  +M   GL P+  T   VL
Sbjct: 254 GDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVL 313

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
            AC  AG  ++GRQ    M++      +    G +VD+  + G  D+A  +   M  + D
Sbjct: 314 KACAGAGAFNLGRQIHGFMVKAVADFDEFVAVG-LVDMYAKHGFLDDARKVFDFMPRR-D 371

Query: 504 AAIWTSLLGACRVHGR----LELGESVAKHLLELE 534
             +W +L+  C   GR    L L   + K  L+L+
Sbjct: 372 LILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLD 406


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 276/682 (40%), Positives = 417/682 (61%), Gaps = 16/682 (2%)

Query: 34  LALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           + +L  C   ++I++   VH   +K GL+      + LI++ +   F  LS A L+F+  
Sbjct: 208 VTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRF--LSEAQLLFDKN 265

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMIL----SGFVPNTYTFPFILKSCAKISAI 146
            + N V WN++I G++      V   FY+   +    +    + +T   +L  C + S +
Sbjct: 266 DKKNIVSWNSMIGGYAREED--VCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSEL 323

Query: 147 SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGY 206
              K++H +  + GL+S+  V  + I  Y + G L S+  VF+    +   S+ AL+ GY
Sbjct: 324 QSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGY 383

Query: 207 ASRGYLDDARQLFD-EMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           A      D R+  D  + + +    P+  T+ ++L AC+ M SL  G  +      +GL 
Sbjct: 384 AQNS---DPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLA 440

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
            +  +  +L+ +Y  CG    A+ LF+ +E R ++SWNVMI GY+      EA+ LFRQM
Sbjct: 441 VDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQM 500

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
           L   I+P ++  + V  AC+ L AL LGK +H +  K H    ++ + +S+IDMYAK G 
Sbjct: 501 LSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLT-EDIFVSSSIIDMYAKGGC 559

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           I  ++++FD +  K +ASWN +I+G  +HG+  +AL LF +M+  GL+PDD TF G+L A
Sbjct: 560 IGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMA 619

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           C+HAGL++ G +YFN M+  + I PKL+HY C+VD+LGRAG  D+A  L++ M   PD+ 
Sbjct: 620 CSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSR 679

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
           IW+SLL +CR+HG L LGE VA  LLELEPE P  YVL+SN++AG+G+WDDV  +R R+ 
Sbjct: 680 IWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMK 739

Query: 566 DKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLY 625
           D G++K  GCS IEVG  VH FL+GD++ P+ + + E    ++  +   G+ PDT  VL+
Sbjct: 740 DIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLH 799

Query: 626 DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREI 685
           D++EE K G L  HSEKLAI++GL++T  G  +R+ KNLR+CG+CH+A K ISK+ NR+I
Sbjct: 800 DLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDI 859

Query: 686 IARDRNRFHHFKDGNCSCNDYW 707
           + RD  RFHHF+DG CSC DYW
Sbjct: 860 VVRDNKRFHHFRDGICSCGDYW 881



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 144/428 (33%), Positives = 228/428 (53%), Gaps = 8/428 (1%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LL  C   ++I   +++H  +  +      F L+  I I   S  G  S + +VF+ +R 
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRI-ITMYSMCGSPSDSRMVFDKLRR 62

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMI-LSGFVPNTYTFPFILKSCAKISAISEGKQ 151
            N   WN I+  ++ +     A+  +  +I ++   P+ +T P ++K+CA +  +  G+ 
Sbjct: 63  KNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQI 122

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IH    K+ L SD FV  +LI MY + G +E A  VF     R+ VS+ ++I G++  G+
Sbjct: 123 IHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGF 182

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
           L ++   F EM + EE+FVP+ +T+VTVL  CA    +E G  V  L    GL   L V 
Sbjct: 183 LQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVN 242

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML--QSN 329
           N+LIDMYSKC  L +A+ LF+  +K++++SWN MIGGY    D      L ++M    + 
Sbjct: 243 NSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAK 302

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           ++ ++ T L+VLP C     L   K +H Y    H   +N  +  + I  Y +CG + ++
Sbjct: 303 MKADEFTILNVLPVCLERSELQSLKELHGY-SWRHGLQSNELVANAFIAAYTRCGALCSS 361

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
           E+VFD M  KT++SWNA++ G A +    KAL L+ +M   GL PD  T   +L AC+  
Sbjct: 362 ERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRM 421

Query: 450 GLLDIGRQ 457
             L  G +
Sbjct: 422 KSLHYGEE 429


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 285/717 (39%), Positives = 413/717 (57%), Gaps = 63/717 (8%)

Query: 50  HSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI--REPNQVI-WNNIIRGHS 106
           H  I   G  +  F  + L+ +   S  G L  A ++F+ I  R  + VI WN+I+  H 
Sbjct: 185 HGLICCNGFESNVFICNALVAM--YSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHV 242

Query: 107 LSSSPVVAIKFYVRMIL------SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG 160
            SS+   A+  + +M L      +    +  +   IL +C  + A+ + K++H + ++ G
Sbjct: 243 KSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNG 302

Query: 161 LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD 220
              D FV  +LI+ YA+ G +E+A  VFN    +D VS+ A++ GY+  G  + A +LF 
Sbjct: 303 TFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFK 362

Query: 221 EMPIREENF-----------------------------------VPNESTVVTVLSACAH 245
            M  R+EN                                    +PN  T+++VLSACA 
Sbjct: 363 NM--RKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACAS 420

Query: 246 MGSLELGNWV-------CSLIEGHGLG---SNLHVTNALIDMYSKCGDLVKARDLFESI- 294
           +G+   G  +       C L   +  G    +L V NALIDMYSKC     AR +F+ I 
Sbjct: 421 LGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIP 480

Query: 295 -EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS--NIEPNDVTFLSVLPACAYLGALD 351
            E+R+V++W VMIGG+    D  +AL LF +M+     + PN  T   +L ACA+L A+ 
Sbjct: 481 LEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIR 540

Query: 352 LGKWIHAYIDKNHQKLNNVSLWTS-LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISG 410
           +GK IHAY+ ++H+  ++     + LIDMY+KCG++  A  VFD M  K+  SW +M++G
Sbjct: 541 IGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTG 600

Query: 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470
             MHG+  +AL +F +M   G  PDDITF+ VL AC+H G++D G  YF++M  DY ++P
Sbjct: 601 YGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTP 660

Query: 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHL 530
           + +HY C +DLL R+G  D+A   +K M M+P A +W +LL ACRVH  +EL E     L
Sbjct: 661 RAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKL 720

Query: 531 LELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVG 590
           +E+  EN G+Y L+SN+YA AGRW DVA IR  +   G+KK PGCS ++       F VG
Sbjct: 721 VEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVG 780

Query: 591 DKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLI 650
           D+ HP S  IY +L+ +   ++  G+VP+T+  L+D+DEE K   L  HSEKLA+AYGL+
Sbjct: 781 DRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLL 840

Query: 651 STKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +T PG  IRI KNLRVCG+CHSA   ISKI + EI+ RD +RFHHFK+G+CSC  YW
Sbjct: 841 TTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 897



 Score =  243 bits (620), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 166/559 (29%), Positives = 266/559 (47%), Gaps = 75/559 (13%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTG---------------LHNTQFALSKLIEICAVSPF-- 77
           +LL +C +   + Q+H QII +G               L +  F   + +    V+ +  
Sbjct: 49  SLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVASYLA 108

Query: 78  -GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
            G   YALLV E +     V WN +IR H        AI    RM+ +G  P+ +T P +
Sbjct: 109 CGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHV 168

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-- 194
           LK+C ++ +   G   H  +   G ES+ F+  +L+ MY++ G LE A ++F++ + R  
Sbjct: 169 LKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGI 228

Query: 195 -DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNES----TVVTVLSACAHMGSL 249
            D +S+ ++++ +        A  LF +M +       NE     ++V +L AC  + ++
Sbjct: 229 DDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAV 288

Query: 250 ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309
                V      +G   ++ V NALID Y+KCG +  A  +F  +E +DV+SWN M+ GY
Sbjct: 289 PQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGY 348

Query: 310 THTSDYK-----------------------------------EALMLFRQMLQSNIEPND 334
           + + +++                                   EAL LFRQM+ S   PN 
Sbjct: 349 SQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNC 408

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNH-QKLNN--------VSLWTSLIDMYAKCGN 385
           VT +SVL ACA LGA   G  IHAY  KN    L+N        + ++ +LIDMY+KC +
Sbjct: 409 VTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRS 468

Query: 386 IKAAEQVFDGMGY--KTLASWNAMISGLAMHGKADKALSLFSRMIGE--GLQPDDITFVG 441
            KAA  +FD +    + + +W  MI G A +G ++ AL LF  MI E  G+ P+  T   
Sbjct: 469 FKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISC 528

Query: 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG-CMVDLLGRAGLFDEAEALLKTMEM 500
           +L AC H   + IG+Q    +++ ++          C++D+  + G  D A  +  +M  
Sbjct: 529 ILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQ 588

Query: 501 KPDAAIWTSLLGACRVHGR 519
           K  A  WTS++    +HGR
Sbjct: 589 K-SAISWTSMMTGYGMHGR 606



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 116/268 (43%), Gaps = 12/268 (4%)

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
             ++  Y  CG    A  + E +     + WN++I  +        A+ +  +ML++   
Sbjct: 100 TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 159

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+  T   VL AC  L +   G   H  I  N  + +NV +  +L+ MY++CG+++ A  
Sbjct: 160 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFE-SNVFICNALVAMYSRCGSLEEASM 218

Query: 392 VFDGM---GYKTLASWNAMISGLAMHGKADKALSLFSRMI------GEGLQPDDITFVGV 442
           +FD +   G   + SWN+++S       A  AL LFS+M           + D I+ V +
Sbjct: 219 IFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNI 278

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
           L AC     +   ++     I++    P +     ++D   + GL + A  +   ME K 
Sbjct: 279 LPACGSLKAVPQTKEVHGNAIRNGTF-PDVFVGNALIDAYAKCGLMENAVKVFNMMEFK- 336

Query: 503 DAAIWTSLLGACRVHGRLELGESVAKHL 530
           D   W +++      G  E    + K++
Sbjct: 337 DVVSWNAMVAGYSQSGNFEAAFELFKNM 364


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 274/684 (40%), Positives = 419/684 (61%), Gaps = 19/684 (2%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTG--LHNTQFALSKLIEICAVSPFGDLSYALLVFET---- 89
           LL  CT++  +K +HS +   G  LH   F L++LI +   S  GDL  A  +F+     
Sbjct: 31  LLQCCTSLTTLKLIHSSLSTRGFLLHTPHF-LARLIIL--YSKLGDLHSARTLFDHRHHH 87

Query: 90  ----IREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145
                + PN  + N ++R ++ +     AI  Y+ M   G   N +T+PF+LK CA    
Sbjct: 88  HHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELG 147

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
              G+ +H  V++ G  SD FV  +L++MYA+ GE+  A  VF++  +RD V +TA+IT 
Sbjct: 148 AVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITL 207

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           Y        A  LF +M  +EE F+ +E T ++V SA   +G   +   V      +G  
Sbjct: 208 YEQAERPLKALMLFRKM--QEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFI 265

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
            ++ V N+++ MY+KCG++ +AR +F+ +E+R+ ISWN M+ GYT      +AL LF QM
Sbjct: 266 GDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQM 325

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
             S  +PN VT L ++ AC+YLG+  LG+ +H ++  +   ++  +L  +++DMY KCG+
Sbjct: 326 QASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDT-TLRNAIMDMYMKCGD 384

Query: 386 IKAAEQVFDG--MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
           +  A ++F+   +G + ++SWN +ISG  +HG   +AL LFSRM  EG++P+DITF  +L
Sbjct: 385 LDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSIL 444

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
           SAC+HAGL+D GR+ F  M +   + P+++HY CMVD+LGRAG  +EA  L+K +  +P 
Sbjct: 445 SACSHAGLIDEGRKCFADMTK-LSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPS 503

Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563
             +W +LL ACR+HG  ELGE  A +L +LEPE+ G YVL+SN+YA + +W +V  +R  
Sbjct: 504 DEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQN 563

Query: 564 LNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEV 623
           +  +G+KK    S IE G+ VH F   D+  P  + +Y  ++ +   ++  G+VPD S V
Sbjct: 564 MKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCV 623

Query: 624 LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNR 683
           L+D++ E KE  L++HSEKLA+A+G++    G  I++ KNLRVC +CH A K IS I+ R
Sbjct: 624 LHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGR 683

Query: 684 EIIARDRNRFHHFKDGNCSCNDYW 707
           +II RD NRFHHF+ G CSC DYW
Sbjct: 684 KIIVRDGNRFHHFQGGRCSCGDYW 707


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 273/597 (45%), Positives = 376/597 (62%), Gaps = 38/597 (6%)

Query: 142 KISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTA 201
           K   IS   QIHA + + GL+  P ++  L   YA  G L+ +  +F ++       +TA
Sbjct: 39  KSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTA 98

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
           +I G+A RG  + A   + +M    +   PN  T  ++L  C     +E G  + S    
Sbjct: 99  IIHGHALRGLHEQALNFYAQM--LTQGVEPNAFTFSSILKLCP----IEPGKALHSQAVK 152

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKA-------------------------------RDL 290
            G  S+L+V   L+D+Y++ GD+V A                               R L
Sbjct: 153 LGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVL 212

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350
           F+ +E+RD + WNVMI GYT      EAL+LFR+ML++  +PN+VT LSVL AC  LGAL
Sbjct: 213 FDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGAL 272

Query: 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISG 410
           + G+W+H+YI+ N  + N V + T+L+DMY+KCG+++ A  VFD +  K + +WN+MI G
Sbjct: 273 ESGRWVHSYIENNGIQFN-VHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVG 331

Query: 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470
            AMHG + +AL LF  M   GL P +ITF+G+LSAC H+G +  G   FN M  +Y I P
Sbjct: 332 YAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEP 391

Query: 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHL 530
           K++HYGCMV+LLGRAG  ++A  L+K M ++PD  +W +LLGACR+HG++ LGE + + L
Sbjct: 392 KIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELL 451

Query: 531 LELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVG 590
           ++    N G Y+LLSN+YA  G WD VA +RT + D G+KK PGCSSIEV + VHEFL G
Sbjct: 452 VDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAG 511

Query: 591 DKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLI 650
              HP+ K IY ML+EI+  L+  G+ P T  VL+D+ E  KE +L  HSEKLAIA+GLI
Sbjct: 512 GLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLI 571

Query: 651 STKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +T+PGTTI+IVKNLRVC +CH  TKLISKI  R+I+ RDRNRFHHF +G+CSC DYW
Sbjct: 572 NTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628



 Score =  235 bits (599), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 135/411 (32%), Positives = 219/411 (53%), Gaps = 36/411 (8%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ 95
           L+ K   + ++ Q+H+ + + GL +      KL    + +  G L Y++ +F   + P+ 
Sbjct: 36  LIDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQR--SYASLGRLDYSVALFGRTQNPSV 93

Query: 96  VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAH 155
             W  II GH+L      A+ FY +M+  G  PN +TF  ILK C     I  GK +H+ 
Sbjct: 94  FFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLC----PIEPGKALHSQ 149

Query: 156 VLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDA 215
            +KLG +SD +V T L+++YA+ G++ SA+ +F+    +  VS TA++T YA  G LD A
Sbjct: 150 AVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAA 209

Query: 216 RQLFDEMPIRE------------ENFVPNES-----------------TVVTVLSACAHM 246
           R LFD M  R+            +N +PNE+                 TV++VLSAC  +
Sbjct: 210 RVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQL 269

Query: 247 GSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMI 306
           G+LE G WV S IE +G+  N+HV  AL+DMYSKCG L  AR +F+ I+ +DV++WN MI
Sbjct: 270 GALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMI 329

Query: 307 GGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK 366
            GY      +EAL LF+ M +  + P ++TF+ +L AC + G +  G  I   +   +  
Sbjct: 330 VGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGI 389

Query: 367 LNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGK 416
              +  +  ++++  + G+++ A ++   M  +     W  ++    +HGK
Sbjct: 390 EPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGK 440


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 278/682 (40%), Positives = 397/682 (58%), Gaps = 76/682 (11%)

Query: 28  LQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVF 87
           +   P++AL+     ++ +KQ+H+Q++  GL N +  L + +   AV    +L Y+  + 
Sbjct: 7   IAKHPTIALIDSFITLKELKQIHTQLVINGLLNNRELLGQFVASIAVRNPTNLLYSNQIL 66

Query: 88  ETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV--PNTYTFPFILKSCAKISA 145
           +   +P     N++IR +S S +P  + +FY +++ S  V  P+ YTF F++++CA+ SA
Sbjct: 67  DQCAKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQ-SA 125

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
              G  +H  ++K G E DP V +                                LI  
Sbjct: 126 CEAGPAVHGALIKHGFEYDPHVES-------------------------------GLIFM 154

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           YA    L    ++F+ +        P+     T++SACA                     
Sbjct: 155 YAEMSCLSSCHRVFESVQ------KPDLVCQTTMVSACA--------------------- 187

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
                         KCGD+  AR+LF+S+ +RD +SWN MI GY      +EAL LF+ M
Sbjct: 188 --------------KCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLM 233

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
               ++ N+V+ +SV+ AC +LGALD GKW HAYI+KN  ++  V+L T+L+DMY KCGN
Sbjct: 234 QMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMT-VNLGTALVDMYFKCGN 292

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           +  A +VF  M  K + +W+  I GLAM+G   K L LFS M  EG+ P++ITF+ VL  
Sbjct: 293 VDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKG 352

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           C+  G +D GR +F++M +D+ I P+L+HYGCMVDL GRAG  +EA   + TM +KP A 
Sbjct: 353 CSVVGFVDEGRSHFDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAG 412

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
            W +LL ACR++  +ELGE  ++ L+E+E +N GAYV LSN+YA  G WD V+ +R  + 
Sbjct: 413 AWGALLNACRMYKNMELGEFASRKLIEVEGKNHGAYVSLSNIYADTGNWDRVSNVRQSMK 472

Query: 566 DKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLY 625
            +G+ K+PGCS +EV   VHEF  GDK HP    I  M  EI   L+ +G+V  T+ VL+
Sbjct: 473 AEGISKLPGCSVMEVNGEVHEFFSGDKSHPSYDVIETMWGEISKRLKLAGYVASTNSVLF 532

Query: 626 DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREI 685
           D++EE KE AL  HSEK+AIA+GL S K G  IRIVKNLR+C +CH  +K+ISKIF REI
Sbjct: 533 DIEEEEKEDALCKHSEKMAIAFGLFSLKEGLPIRIVKNLRICWDCHDVSKMISKIFEREI 592

Query: 686 IARDRNRFHHFKDGNCSCNDYW 707
           I RDRNRFHHFKDG CSC D+W
Sbjct: 593 IVRDRNRFHHFKDGECSCKDFW 614


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 271/673 (40%), Positives = 396/673 (58%), Gaps = 77/673 (11%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
            LL+ C  ++   ++H+  ++ G+   +    +L    A S   DL+  LL      +P 
Sbjct: 40  GLLTGCATLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTP--DPT 97

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
            V + + I  HS     + A+     M+  G +P ++T    L +C     ++ G+ +HA
Sbjct: 98  TVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPAC---HGLALGRALHA 154

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
           +  KL L  D +V T+L+ MYA+ G+                                D 
Sbjct: 155 YAFKLALAGDSYVATALLGMYARGGDA-------------------------------DA 183

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274
           AR LFDEMP  + + VP     VT +  C                               
Sbjct: 184 ARALFDEMP--DPHVVP-----VTAMLTC------------------------------- 205

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
              Y+K G L  AR+LF+ +  +D I WN MI GYT      EAL LFR ML+S ++P++
Sbjct: 206 ---YAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDE 262

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           V  +  L A A LG  + G+W+H+Y+  + +   N  + T+LIDMY KCG+++ A  VF+
Sbjct: 263 VAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFN 322

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
            +G K +  WNAMI+G AMHG + KAL +FS++  +GL P DITF+G+L+AC+H+GL+D 
Sbjct: 323 SIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDE 382

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
           G Q+F +M ++Y I PK++HYGCMVDLLGRAGL +EA  L+++M + PD  +W SLL AC
Sbjct: 383 GHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAAC 442

Query: 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPG 574
           R+H  + LG+ +A +L+     N G Y+LLSN+YA  G W++VA +R+ +   G++K PG
Sbjct: 443 RLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPG 502

Query: 575 CSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEG 634
           CS+IEVG  V+EF+ GD  HP++  IY ML++++ ++++ G VP T  VL+D+DE  KE 
Sbjct: 503 CSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEK 562

Query: 635 ALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFH 694
           AL+ HSEKLA+A+GLIST PG TI+IVKNLR C +CH+  KLISKI  R+I+ RDRNRFH
Sbjct: 563 ALAVHSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFH 622

Query: 695 HFKDGNCSCNDYW 707
           HF DG+C+C DYW
Sbjct: 623 HFVDGSCTCGDYW 635


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 271/673 (40%), Positives = 396/673 (58%), Gaps = 77/673 (11%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
            LL+ C  ++   ++H+  ++ G+   +    +L    A S   DL+  LL      +P 
Sbjct: 39  GLLTGCATLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTP--DPT 96

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
            V + + I  HS     + A+     M+  G +P ++T    L +C     ++ G+ +HA
Sbjct: 97  TVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPAC---HGLALGRALHA 153

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
           +  KL L  D +V T+L+ MYA+ G+                                D 
Sbjct: 154 YAFKLALAGDSYVATALLGMYARGGDA-------------------------------DA 182

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274
           AR LFDEMP  + + VP     VT +  C                               
Sbjct: 183 ARALFDEMP--DPHVVP-----VTAMLTC------------------------------- 204

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
              Y+K G L  AR+LF+ +  +D I WN MI GYT      EAL LFR ML+S ++P++
Sbjct: 205 ---YAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDE 261

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           V  +  L A A LG  + G+W+H+Y+  + +   N  + T+LIDMY KCG+++ A  VF+
Sbjct: 262 VAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFN 321

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
            +G K +  WNAMI+G AMHG + KAL +FS++  +GL P DITF+G+L+AC+H+GL+D 
Sbjct: 322 SIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDE 381

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
           G Q+F +M ++Y I PK++HYGCMVDLLGRAGL +EA  L+++M + PD  +W SLL AC
Sbjct: 382 GHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAAC 441

Query: 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPG 574
           R+H  + LG+ +A +L+     N G Y+LLSN+YA  G W++VA +R+ +   G++K PG
Sbjct: 442 RLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPG 501

Query: 575 CSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEG 634
           CS+IEVG  V+EF+ GD  HP++  IY ML++++ ++++ G VP T  VL+D+DE  KE 
Sbjct: 502 CSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEK 561

Query: 635 ALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFH 694
           AL+ HSEKLA+A+GLIST PG TI+IVKNLR C +CH+  KLISKI  R+I+ RDRNRFH
Sbjct: 562 ALAVHSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFH 621

Query: 695 HFKDGNCSCNDYW 707
           HF DG+C+C DYW
Sbjct: 622 HFVDGSCTCGDYW 634


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 280/676 (41%), Positives = 404/676 (59%), Gaps = 15/676 (2%)

Query: 40  CTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQV 96
           C++ +++KQ   +H+ I++T L      L   + I   +   DL  A   F+ + +   V
Sbjct: 68  CSSSKDLKQGQLLHAMILETQLLEFDIILGTAL-ITMYARCRDLELARKTFDEMGKKTLV 126

Query: 97  IWNNIIRGHSLSSSPVVAIKFYVRMIL---SGFVPNTYTFPFILKSCAKISAISEGKQIH 153
            WN +I G+S +     A+K Y  M+     G  P+  TF   L +C+ +  IS+G++I 
Sbjct: 127 TWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIE 186

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
           A  +  G  SD  V  +LINMY++ G LESAR VF++   RD +++  +I+GYA +G   
Sbjct: 187 ARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAAT 246

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
            A +LF  M   +    PN  T + +L+AC ++  LE G  +   ++ HG  S+L + N 
Sbjct: 247 QALELFQRMGPNDPK--PNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNV 304

Query: 274 LIDMYSKCGD-LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           L++MY+KC   L +AR +FE +  RDVI+WN++I  Y      K+AL +F+QM   N+ P
Sbjct: 305 LLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAP 364

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N++T  +VL ACA LGA   GK +HA I     K + V L  SL++MY +CG++     V
Sbjct: 365 NEITLSNVLSACAVLGAKRQGKAVHALIASGRCKAD-VVLENSLMNMYNRCGSLDDTVGV 423

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F  +  K+L SW+ +I+  A HG +   L  F  ++ EGL  DD+T V  LSAC+H G+L
Sbjct: 424 FAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGML 483

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
             G Q F +M+ D+ ++P  +H+ CMVDLL RAG  + AE L+  M   PDA  WTSLL 
Sbjct: 484 KEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLS 543

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYV-LLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
            C++H   +    VA  L ELE E+  + V LLSN+YA AGRWDDV   R R   +  +K
Sbjct: 544 GCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTRNR---RAARK 600

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
            PGCS IE+   VHEF+ GDK HP+ + I   +  +   ++ +G+VPD   VL+++ EE 
Sbjct: 601 NPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEE 660

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           KE  L +HSEKLAIAYGLIST PGT + IVKNLR C +CH+A K IS+I  R+I+ RD  
Sbjct: 661 KEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDST 720

Query: 692 RFHHFKDGNCSCNDYW 707
           RFHHF++G+CSC DYW
Sbjct: 721 RFHHFENGSCSCKDYW 736



 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 170/559 (30%), Positives = 279/559 (49%), Gaps = 44/559 (7%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G ++ AL VF  I  PN V W  I+   + +     A+ +Y RM+L G  P+   F   +
Sbjct: 6   GSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAI 65

Query: 138 KSCAKISAISEGKQIHAHVLKLG-LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
             C+    + +G+ +HA +L+   LE D  + T+LI MYA+  +LE AR  F++   +  
Sbjct: 66  GVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTL 125

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIRE-ENFVPNESTVVTVLSACAHMGSLELGNWV 255
           V++ ALI GY+  G    A +++ +M  +  E   P+  T  + L AC+ +G +  G  +
Sbjct: 126 VTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREI 185

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
            +     G  S+  V NALI+MYSKCG L  AR +F+ ++ RDVI+WN MI GY      
Sbjct: 186 EARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAA 245

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
            +AL LF++M  ++ +PN VTF+ +L AC  L  L+ G+ IH  + K H   +++ +   
Sbjct: 246 TQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKV-KEHGYESDLVIGNV 304

Query: 376 LIDMYAKC-GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
           L++MY KC  +++ A QVF+ +  + + +WN +I     +G+A  AL +F +M  E + P
Sbjct: 305 LLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAP 364

Query: 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494
           ++IT   VLSAC   G    G+   +A+I   +    +     ++++  R G  D+   +
Sbjct: 365 NEITLSNVLSACAVLGAKRQGKA-VHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGV 423

Query: 495 LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554
              +  K   + W++L+ A   HG    G    +H  EL  E   A              
Sbjct: 424 FAAIRDKSLVS-WSTLIAAYAQHGHSRTG---LEHFWELLQEGLAA-------------- 465

Query: 555 DDVATIRTRLNDKGMKKVPGCSS---IEVGSVVHEFL--VGDK-VHPQSKHIYEMLDEID 608
           DDV  + T         +  CS    ++ G  V  FL  VGD  + P  +H   M+D   
Sbjct: 466 DDVTMVST---------LSACSHGGMLKEG--VQSFLSMVGDHGLAPDYRHFLCMVD--- 511

Query: 609 ALLEKSGFVPDTSEVLYDM 627
            LL ++G +     +++DM
Sbjct: 512 -LLSRAGRLEAAENLIHDM 529



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 121/437 (27%), Positives = 215/437 (49%), Gaps = 46/437 (10%)

Query: 174 MYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
           MY + G +  A  VF+     ++VS+T ++  +A  G+  +A   +  M +  E   P+ 
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVL--EGLRPDG 58

Query: 234 STVVTVLSACAHMGSLELGNWVCSLI-EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFE 292
           +  V  +  C+    L+ G  + ++I E   L  ++ +  ALI MY++C DL  AR  F+
Sbjct: 59  AMFVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFD 118

Query: 293 SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE---PNDVTFLSVLPACAYLGA 349
            + K+ +++WN +I GY+   D++ AL +++ M+  + E   P+ +TF S L AC+ +G 
Sbjct: 119 EMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGD 178

Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
           +  G+ I A    +    +++ +  +LI+MY+KCG++++A +VFD +  + + +WN MIS
Sbjct: 179 ISQGREIEARTVASGYASDSI-VQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMIS 237

Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF---------- 459
           G A  G A +AL LF RM     +P+ +TF+G+L+AC +   L+ GR             
Sbjct: 238 GYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYES 297

Query: 460 -----NAMIQDY-KISPKLQH---------------YGCMVDLLGRAGLFDEAEALLKTM 498
                N ++  Y K S  L+                +  ++    + G   +A  + K M
Sbjct: 298 DLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQM 357

Query: 499 EMK---PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVL---LSNMYAGAG 552
           +++   P+    +++L AC V G    G++V  H L          VL   L NMY   G
Sbjct: 358 QLENVAPNEITLSNVLSACAVLGAKRQGKAV--HALIASGRCKADVVLENSLMNMYNRCG 415

Query: 553 RWDDVATIRTRLNDKGM 569
             DD   +   + DK +
Sbjct: 416 SLDDTVGVFAAIRDKSL 432


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 284/690 (41%), Positives = 414/690 (60%), Gaps = 40/690 (5%)

Query: 19  PSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQI-IKTGLHNTQFALSKLIEICAVSPF 77
           P   P +  L       +L    + + +K++HS+I I   LH       KL+   A +  
Sbjct: 27  PQLSPKFTALTEDLCNKILDVNPDAKTLKKLHSKILIDQNLHPNPSLGIKLMR--AYAAC 84

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G+  Y   +F+ I + N V +N +IR +  +     A+  +  M   GF P+ YT+P +L
Sbjct: 85  GEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVL 144

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
           K+C+    +  G QIH  V+KLGL+ + ++   L++MY +   L++AR V ++   RD V
Sbjct: 145 KACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMV 204

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           S+ +++ GYA  G  +DA +L  EM   +    P+  T+ ++L A               
Sbjct: 205 SWNSMVAGYAQNGRFNDALKLCREM--EDLKLKPDAGTMGSLLPA--------------- 247

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
                       VTN      + C +++  +D+F  ++++ +ISWNVMI  Y + +   E
Sbjct: 248 ------------VTN------TSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNE 289

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           A+ L+ QM    +EP+ V+  SVLPAC  L A  LG+ IH Y+++   +  N+ L  +LI
Sbjct: 290 AVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLR-PNLLLENALI 348

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI 437
           DMYAKCG +K A  VFD M ++ + SW +MIS   M G+   A++LF +M   G  PD I
Sbjct: 349 DMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWI 408

Query: 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT 497
            FV VL+AC+HAGL+D GR  FN M + Y I+P ++HY CMVDLLGRAG  DEA  L + 
Sbjct: 409 AFVSVLAACSHAGLVDEGRYCFNLMAE-YGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQ 467

Query: 498 MEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557
           M M+P+  +W SLL ACRV+  + +    A HL +L PE  G YVLLSN+YA AGRW DV
Sbjct: 468 MPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGYYVLLSNIYAKAGRWQDV 527

Query: 558 ATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFV 617
            T+R+ +N KG+KK+PG S++E+   V+ FL GD+ H QSK IY+ L  +   +++ G++
Sbjct: 528 ETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSKEIYKALGVLVGRMKELGYM 587

Query: 618 PDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLI 677
           P+T   L+D++EE KE  L+ HSEKLAI + +++TKPG+TIRI KN+RVCG+CH ATKLI
Sbjct: 588 PETDSALHDVEEEDKECHLAVHSEKLAIVFAILNTKPGSTIRITKNIRVCGDCHVATKLI 647

Query: 678 SKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           SKI  REII RD +RFHHF+DG CSC DYW
Sbjct: 648 SKIAEREIIIRDTHRFHHFRDGVCSCGDYW 677


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 284/682 (41%), Positives = 421/682 (61%), Gaps = 9/682 (1%)

Query: 30  NQPSLA-LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALL 85
           N+ SL+ +++ CT +++    K +H  +IK G     F+ + L+++ A    GDL+ A+ 
Sbjct: 257 NEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYA--KVGDLADAIS 314

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145
           VFE I++P+ V WN +I G  L      A++   +M  SG  PN +T    LK+CA +  
Sbjct: 315 VFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGL 374

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
              G+Q+H+ ++K+ +ESD FV   L++MY++   LE AR+ FN    +D +++ A+I+G
Sbjct: 375 KELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISG 434

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           Y+      +A  LF EM   +E    N++T+ T+L + A +  + +   V  L    G  
Sbjct: 435 YSQYWEDMEALSLFVEM--HKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFH 492

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
           S+++V N+LID Y KC  +  A  +FE     D++S+  MI  Y      +EAL LF +M
Sbjct: 493 SDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEM 552

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
               ++P+     S+L ACA L A + GK +H +I K    L+ +    SL++MYAKCG+
Sbjct: 553 QDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLD-IFAGNSLVNMYAKCGS 611

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           I  A + F  +  + + SW+AMI GLA HG   +AL LF++M+ EG+ P+ IT V VL A
Sbjct: 612 IDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGA 671

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           CNHAGL+   + YF +M + +   P  +HY CM+DLLGRAG  +EA  L+  M  + +A+
Sbjct: 672 CNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANAS 731

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
           +W +LLGA R+H  +ELG   A+ L  LEPE  G +VLL+N+YA AG+W++VA +R  + 
Sbjct: 732 VWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMR 791

Query: 566 DKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLY 625
           D  +KK PG S IEV   V+ FLVGD+ H +S+ IY  LDE+  L++K+G+VP     L+
Sbjct: 792 DSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLH 851

Query: 626 DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREI 685
           D+++  KE  L HHSEKLA+A+GLI+T  G  IR+ KNLRVC +CH+A K I KI +REI
Sbjct: 852 DVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREI 911

Query: 686 IARDRNRFHHFKDGNCSCNDYW 707
           I RD NRFHHFKDG+CSC DYW
Sbjct: 912 IVRDINRFHHFKDGSCSCGDYW 933



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 167/577 (28%), Positives = 285/577 (49%), Gaps = 54/577 (9%)

Query: 36  LLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LLS+C   ++++   Q+H+ I K+GL +     + LI +   S   +  YA  + +   E
Sbjct: 62  LLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINL--YSKCRNFGYARKLVDESSE 119

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
           P+ V W+ +I G++ +     A+  +  M L G   N +TF  +LK+C+ +  +  GKQ+
Sbjct: 120 PDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQV 179

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H  V+  G E D FV  +L+ MYA+  E   ++ +F++   R+ VS+ AL + Y    + 
Sbjct: 180 HGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFC 239

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
            +A  LF EM +      PNE ++ ++++AC  +     G  +   +   G   +    N
Sbjct: 240 GEAVGLFYEMVL--SGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSAN 297

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           AL+DMY+K GDL  A  +FE I++ D++SWN +I G      +++AL L  QM +S I P
Sbjct: 298 ALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICP 357

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N  T  S L ACA +G  +LG+ +H+ + K   + +++ +   L+DMY+KC  ++ A   
Sbjct: 358 NIFTLSSALKACAGMGLKELGRQLHSSLMKMDME-SDLFVSVGLVDMYSKCDLLEDARMA 416

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F+ +  K L +WNA+ISG + + +  +ALSLF  M  EG+  +  T   +L +     ++
Sbjct: 417 FNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVV 476

Query: 453 DIGRQYFNAMIQD------YKISPKLQHYG------------------------CMVDLL 482
            + RQ     ++       Y ++  +  YG                         M+   
Sbjct: 477 HVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAY 536

Query: 483 GRAGLFDEAEAL---LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG 539
            + G  +EA  L   ++ ME+KPD  + +SLL AC      E G+ +  H+L+       
Sbjct: 537 AQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKY------ 590

Query: 540 AYVL-------LSNMYAGAGRWDDVATIRTRLNDKGM 569
            +VL       L NMYA  G  DD     + L ++G+
Sbjct: 591 GFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGI 627



 Score =  209 bits (532), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 125/386 (32%), Positives = 203/386 (52%), Gaps = 5/386 (1%)

Query: 126 FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR 185
           F P + ++  +L  C    ++  G QIHAH+ K GL  DP +   LIN+Y++      AR
Sbjct: 52  FTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYAR 111

Query: 186 LVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH 245
            + ++SS  D VS++ALI+GYA  G    A   F EM +       NE T  +VL AC+ 
Sbjct: 112 KLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLL--GVKCNEFTFSSVLKACSI 169

Query: 246 MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVM 305
           +  L +G  V  ++   G   ++ V N L+ MY+KC + + ++ LF+ I +R+V+SWN +
Sbjct: 170 VKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNAL 229

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365
              Y       EA+ LF +M+ S I+PN+ +  S++ AC  L     GK IH Y+ K   
Sbjct: 230 FSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGY 289

Query: 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
             +  S   +L+DMYAK G++  A  VF+ +    + SWNA+I+G  +H   ++AL L  
Sbjct: 290 DWDPFSA-NALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLG 348

Query: 426 RMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485
           +M   G+ P+  T    L AC   GL ++GRQ  +++++    S      G +VD+  + 
Sbjct: 349 QMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVG-LVDMYSKC 407

Query: 486 GLFDEAEALLKTMEMKPDAAIWTSLL 511
            L ++A      +  K D   W +++
Sbjct: 408 DLLEDARMAFNLLPEK-DLIAWNAII 432



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 167/337 (49%), Gaps = 20/337 (5%)

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
           I + NF P   +   +LS C    SL  G  + + I   GL  +  + N LI++YSKC +
Sbjct: 47  IDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRN 106

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
              AR L +   + D++SW+ +I GY        ALM F +M    ++ N+ TF SVL A
Sbjct: 107 FGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKA 166

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
           C+ +  L +GK +H  +  +  +  +V +  +L+ MYAKC     ++++FD +  + + S
Sbjct: 167 CSIVKDLRIGKQVHGVVVVSGFE-GDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVS 225

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
           WNA+ S         +A+ LF  M+  G++P++ +   +++AC   GL D  R     +I
Sbjct: 226 WNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT--GLRDSSR---GKII 280

Query: 464 QDYKISPKLQH------YGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
             Y I  KL +         +VD+  + G   +A ++ + ++ +PD   W +++  C +H
Sbjct: 281 HGYLI--KLGYDWDPFSANALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLH 337

Query: 518 GRLELGESVAKHLLELEPEN--PGAYVLLSNMYAGAG 552
              E  E   + L +++     P  + L S + A AG
Sbjct: 338 ---EHHEQALELLGQMKRSGICPNIFTLSSALKACAG 371


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  530 bits (1365), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 275/659 (41%), Positives = 411/659 (62%), Gaps = 5/659 (0%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           +H+ I K G  +  F  + LI+  AV   G ++ A   F+ I   + V W  ++  ++ +
Sbjct: 63  LHACIYKLGHESNAFVGTALIDAYAVC--GSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVH 168
                +++ +  M + GF PN +TF  +LK+C  + A S GK +H  VLK   E D +V 
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVG 180

Query: 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
             L+++Y + G+      VF +    D + ++ +I+ YA      +A +LF +M  R   
Sbjct: 181 VGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQM--RRAF 238

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288
            +PN+ T  +VL +CA + +L+LG  V   +   GL  N+ V+NAL+D+Y+KCG L  + 
Sbjct: 239 VLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSM 298

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
            LF  +  R+ ++WN MI GY  + D  +AL L++ ML+  ++ ++VT+ SVL ACA L 
Sbjct: 299 KLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLA 358

Query: 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI 408
           A++LG  IH+   K      +V +  +LIDMYAKCG+IK A  VFD +  +   SWNAMI
Sbjct: 359 AMELGTQIHSLSLKTIYD-KDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMI 417

Query: 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
           SG +MHG   +AL  F  M      P+ +TFV +LSAC++AGLLDIG+ YF +M+QDY I
Sbjct: 418 SGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGI 477

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
            P ++HY CMV LLGR+G  D+A  L++ + ++P+  +W +LLGAC +H  ++LG   A+
Sbjct: 478 EPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQ 537

Query: 529 HLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFL 588
            +L+++P++   +VLLSN+YA   RW+ VA++R  + +KG+KK PG S IE   +VH F 
Sbjct: 538 QILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFS 597

Query: 589 VGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYG 648
           VGD  HP  K I  ML+ ++   EK+G+VPD + VL D++++ K+  L  HSE+LA+A+G
Sbjct: 598 VGDTSHPDMKMISGMLEWLNMKTEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERLALAFG 657

Query: 649 LISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           LI T     IRI+KNLR+C +CHSA KLISKI  R+II RD NRFHHF+DG CSC DYW
Sbjct: 658 LIRTPSRGHIRILKNLRICTDCHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 147/480 (30%), Positives = 232/480 (48%), Gaps = 39/480 (8%)

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           + N V +  +I+G+  S      +  + R+   G   N + F  ILK    +        
Sbjct: 3   DRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYS 62

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +HA + KLG ES+ FV T+LI+ YA  G + SAR  F+  + +D VS+T ++  YA    
Sbjct: 63  LHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDR 122

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
             D+ QLF EM  R   F PN  T   VL AC  + +  +G  V   +       +L+V 
Sbjct: 123 FQDSLQLFAEM--RMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVG 180

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
             L+D+Y+K GD      +FE + K DVI W+ MI  Y  ++  +EA+ LF QM ++ + 
Sbjct: 181 VGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVL 240

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           PN  TF SVL +CA +  L LGK +H ++ K      NV +  +L+D+YAKCG +  + +
Sbjct: 241 PNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLD-GNVFVSNALMDVYAKCGRLDNSMK 299

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           +F  +  +   +WN MI G    G  DKALSL+  M+   +Q  ++T+  VL AC     
Sbjct: 300 LFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAA 359

Query: 452 LDIGRQYF---------------NAMIQDYKISPKLQHYGCMVDLLGRA----------- 485
           +++G Q                 NA+I  Y     +++   + D+L              
Sbjct: 360 MELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISG 419

Query: 486 ----GLFDEAEALLKTM---EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE---LEP 535
               GL  EA    + M   E  P+   + S+L AC   G L++G++  K +++   +EP
Sbjct: 420 YSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEP 479



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 175/314 (55%), Gaps = 12/314 (3%)

Query: 27  LLQNQPSLA-LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSY 82
           +L NQ + A +L  C +++N+   KQVH  ++K GL    F  + L+++ A    G L  
Sbjct: 239 VLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYA--KCGRLDN 296

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           ++ +F  +   N+V WN +I G+  S     A+  Y  M+      +  T+  +L++CA 
Sbjct: 297 SMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACAS 356

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
           ++A+  G QIH+  LK   + D  V  +LI+MYA+ G +++ARLVF+  S RD +S+ A+
Sbjct: 357 LAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAM 416

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEG 261
           I+GY+  G + +A + F  M  +E   VPN+ T V++LSAC++ G L++G N+  S+++ 
Sbjct: 417 ISGYSMHGLVGEALKAFQMM--QETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQD 474

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALM 320
           +G+   +     ++ +  + G L KA  L E I  + +V  W  ++G     +D    +M
Sbjct: 475 YGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIM 534

Query: 321 LFRQMLQSNIEPND 334
             +Q+LQ  I+P D
Sbjct: 535 SAQQILQ--IDPQD 546


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 267/566 (47%), Positives = 365/566 (64%), Gaps = 42/566 (7%)

Query: 142 KISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTA 201
           K   IS   QIHA + + GL+  P ++  L   YA  G L+ +  +F ++       +TA
Sbjct: 39  KSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTA 98

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
           +I G+A RG +  A+QLFD MP         E ++V++                      
Sbjct: 99  IIHGHALRGDVVSAQQLFDTMP---------EKSLVSL---------------------- 127

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALML 321
                      A++  Y+K G+L  AR LF+ +E+RD + WNVMI GYT      EAL+L
Sbjct: 128 ----------TAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVL 177

Query: 322 FRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381
           FR+ML++  +PN+VT LSVL AC  LGAL+ G+W+H+YI+ N  + N V + T+L+DMY+
Sbjct: 178 FRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFN-VHVGTALVDMYS 236

Query: 382 KCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVG 441
           KCG+++ A  VFD +  K + +WN+MI G AMHG + +AL LF  M   GL P +ITF+G
Sbjct: 237 KCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIG 296

Query: 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK 501
           +LSAC H+G +  G   FN M  +Y I PK++HYGCMV+LLGRAG  ++A  L+K M ++
Sbjct: 297 ILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIE 356

Query: 502 PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIR 561
           PD  +W +LLGACR+HG++ LGE + + L++    N G Y+LLSN+YA  G WD VA +R
Sbjct: 357 PDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLR 416

Query: 562 TRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTS 621
           T + D G+KK PGCSSIEV + VHEFL G   HP+ K IY ML+EI+  L+  G+ P T 
Sbjct: 417 TMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTD 476

Query: 622 EVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIF 681
            VL+D+ E  KE +L  HSEKLAIA+GLI+T+PGTTI+IVKNLRVC +CH  TKLISKI 
Sbjct: 477 IVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKIT 536

Query: 682 NREIIARDRNRFHHFKDGNCSCNDYW 707
            R+I+ RDRNRFHHF +G+CSC DYW
Sbjct: 537 GRKIVVRDRNRFHHFVNGSCSCGDYW 562



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 153/309 (49%), Gaps = 39/309 (12%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G+L  A ++F+ + E + V WN +I G++ +  P  A+  + RM+ +   PN  T   +L
Sbjct: 138 GELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVL 197

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
            +C ++ A+  G+ +H+++   G++ +  V T+L++MY++ G LE ARLVF+K   +D V
Sbjct: 198 SACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVV 257

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           ++ ++I GYA  G+  +A QLF  M        P   T + +LSAC H G      WV  
Sbjct: 258 AWNSMIVGYAMHGFSQEALQLFKSMC--RMGLHPTNITFIGILSACGHSG------WV-- 307

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
             EG        + N + D Y               IE + +  +  M+         ++
Sbjct: 308 -TEG------WDIFNKMKDEY--------------GIEPK-IEHYGCMVNLLGRAGHVEQ 345

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG-KWIHAYIDKNHQKLNNVSLWTSL 376
           A  L + M   NIEP+ V + ++L AC   G + LG K +   +D+N   L N   +  L
Sbjct: 346 AYELVKNM---NIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQN---LANSGTYILL 399

Query: 377 IDMYAKCGN 385
            ++YA  GN
Sbjct: 400 SNIYAAVGN 408



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 7/175 (4%)

Query: 34  LALLSKCTNM---QNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           L++LS C  +   ++ + VHS I   G+       + L+++   S  G L  A LVF+ I
Sbjct: 194 LSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDM--YSKCGSLEDARLVFDKI 251

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            + + V WN++I G+++      A++ +  M   G  P   TF  IL +C     ++EG 
Sbjct: 252 DDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGW 311

Query: 151 QIHAHVL-KLGLESDPFVHTSLINMYAQNGELESA-RLVFNKSSLRDAVSYTALI 203
            I   +  + G+E     +  ++N+  + G +E A  LV N +   D V +  L+
Sbjct: 312 DIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLL 366


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 278/665 (41%), Positives = 412/665 (61%), Gaps = 6/665 (0%)

Query: 43  MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNII 102
           ++ +K+VH    K G  +     + LI + A    G +  A LVF+ + + + + WN +I
Sbjct: 250 LEWVKEVHKHAGKAGFISDLRVGNALIHMYA--KCGSIDDARLVFDGMCDRDVISWNAMI 307

Query: 103 RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE 162
            G + +     A   +++M   GFVP++ T+  +L +     A    K++H H +++GL 
Sbjct: 308 GGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLV 367

Query: 163 SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
           SD  V ++ ++MY + G ++ A+L+F+K ++R+  ++ A+I G A +    +A  LF +M
Sbjct: 368 SDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQM 427

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
             R E F P+ +T V +LSA     +LE    V S     GL  +L V NAL+ MY+KCG
Sbjct: 428 --RREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGL-VDLRVGNALVHMYAKCG 484

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
           + + A+ +F+ + +R+V +W VMI G        EA  LF QML+  I P+  T++S+L 
Sbjct: 485 NTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILS 544

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           ACA  GAL+  K +H++   N   ++++ +  +L+ MYAKCG++  A +VFD M  + + 
Sbjct: 545 ACASTGALEWVKEVHSHA-VNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVY 603

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           SW  MI GLA HG+   AL LF +M  EG +P+  +FV VLSAC+HAGL+D GR+ F ++
Sbjct: 604 SWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSL 663

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
            QDY I P ++HY CMVDLLGRAG  +EA+  +  M ++P  A W +LLGAC  +G LE+
Sbjct: 664 TQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEM 723

Query: 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582
            E  AK  L+L+P++   YVLLSN+YA  G W+    +R+ +  +G++K PG S IEV +
Sbjct: 724 AEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDN 783

Query: 583 VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEK 642
            +H F+VGD  HP+SK IY  L ++   L+  G+VPDT  VL + D+E+KE AL  HSEK
Sbjct: 784 QIHSFVVGDTSHPESKEIYAKLKDLIKRLKAEGYVPDTRLVLRNTDQEYKEQALCSHSEK 843

Query: 643 LAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCS 702
           LAI YGL+ T     IR+ KNLRVC +CH+ATK ISK+  REI+ARD  RFHHFKDG CS
Sbjct: 844 LAIVYGLMHTPYRNPIRVYKNLRVCSDCHTATKFISKVTGREIVARDAKRFHHFKDGVCS 903

Query: 703 CNDYW 707
           C DYW
Sbjct: 904 CGDYW 908



 Score =  243 bits (620), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 174/570 (30%), Positives = 280/570 (49%), Gaps = 53/570 (9%)

Query: 34  LALLSKC---TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           L++L  C    +++  K++H+ II++G  +     + L+ +      G +  A L+F+ +
Sbjct: 34  LSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYV--KCGSIDDAQLIFDKM 91

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            E N + W  +I G +       A   +++M   GF+PN+YT+  IL + A   A+   K
Sbjct: 92  VERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVK 151

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           ++H+H +  GL  D  V  +L++MYA++G ++ AR+VF+    RD  S+T +I G A  G
Sbjct: 152 EVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHG 211

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACA--HMGSLELGNWVCSLIEGHGLGSNL 268
              +A  LF +M       +PN +T +++L+A A    G+LE    V       G  S+L
Sbjct: 212 RGQEAFSLFLQM--ERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDL 269

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
            V NALI MY+KCG +  AR +F+ +  RDVISWN MIGG        EA  +F +M Q 
Sbjct: 270 RVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQE 329

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
              P+  T+LS+L      GA +  K +H +  +    ++++ + ++ + MY +CG+I  
Sbjct: 330 GFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEV-GLVSDLRVGSAFVHMYIRCGSIDD 388

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA--- 445
           A+ +FD +  + + +WNAMI G+A      +ALSLF +M  EG  PD  TFV +LSA   
Sbjct: 389 AQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVG 448

Query: 446 -------------CNHAGLLDI-------------GRQYFNAMIQDYKISPKLQHYGCMV 479
                           AGL+D+             G   +   + D  +   +  +  M+
Sbjct: 449 EEALEWVKEVHSYAIDAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMI 508

Query: 480 DLLGRAGLFDEAEALLKTM---EMKPDAAIWTSLLGACRVHGRLELGESVAKHLL----- 531
             L + G   EA +L   M    + PDA  + S+L AC   G LE  + V  H +     
Sbjct: 509 SGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLV 568

Query: 532 -ELEPENPGAYVLLSNMYAGAGRWDDVATI 560
            +L   N      L +MYA  G  DD   +
Sbjct: 569 SDLRVGNA-----LVHMYAKCGSVDDARRV 593



 Score =  238 bits (606), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 150/443 (33%), Positives = 240/443 (54%), Gaps = 12/443 (2%)

Query: 114 AIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLIN 173
           A+K Y +M   G  PN  T+  ILK+C    ++  GK+IHAH+++ G +SD  V T+L+N
Sbjct: 14  AMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVN 73

Query: 174 MYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
           MY + G ++ A+L+F+K   R+ +S+T +I G A  G   +A   F +M  + E F+PN 
Sbjct: 74  MYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQM--QREGFIPNS 131

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
            T V++L+A A  G+LE    V S     GL  +L V NAL+ MY+K G +  AR +F+ 
Sbjct: 132 YTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDG 191

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY--LGALD 351
           + +RD+ SW VMIGG       +EA  LF QM +    PN  T+LS+L A A    GAL+
Sbjct: 192 MVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALE 251

Query: 352 LGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGL 411
             K +H +  K    ++++ +  +LI MYAKCG+I  A  VFDGM  + + SWNAMI GL
Sbjct: 252 WVKEVHKHAGKA-GFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGL 310

Query: 412 AMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK 471
           A +G   +A ++F +M  EG  PD  T++ +L+     G  +  ++     ++   +S  
Sbjct: 311 AQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSD- 369

Query: 472 LQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLL 531
           L+     V +  R G  D+A+ +   + ++ +   W +++G      + + G       L
Sbjct: 370 LRVGSAFVHMYIRCGSIDDAQLIFDKLAVR-NVTTWNAMIGGV---AQQKCGREALSLFL 425

Query: 532 ELEPEN--PGAYVLLSNMYAGAG 552
           ++  E   P A   ++ + A  G
Sbjct: 426 QMRREGFFPDATTFVNILSANVG 448



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 149/516 (28%), Positives = 240/516 (46%), Gaps = 47/516 (9%)

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
           +I GYA  GY +DA +++ +M  R E   PNE T +++L AC    SL+ G  + + I  
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQM--RREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQ 58

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALML 321
            G  S++ V  AL++MY KCG +  A+ +F+ + +R+VISW VMIGG  H    +EA   
Sbjct: 59  SGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHR 118

Query: 322 FRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381
           F QM +    PN  T++S+L A A  GAL+  K +H++       L ++ +  +L+ MYA
Sbjct: 119 FLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLAL-DLRVGNALVHMYA 177

Query: 382 KCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVG 441
           K G+I  A  VFDGM  + + SW  MI GLA HG+  +A SLF +M   G  P+  T++ 
Sbjct: 178 KSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLS 237

Query: 442 VL--SACNHAGLLDIGRQYFN-----AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494
           +L  SA    G L+  ++          I D ++   L H      +  + G  D+A  +
Sbjct: 238 ILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIH------MYAKCGSIDDARLV 291

Query: 495 LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE----NPGAYVLLSNMYAG 550
              M    D   W +++G    +G    G       L+++ E    +   Y+ L N +  
Sbjct: 292 FDGM-CDRDVISWNAMIGGLAQNG---CGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVS 347

Query: 551 AGRWDDVATIRTRLNDKGMKKVPGCSS------IEVGSVVHEFLVGDKVHPQSKHIYE-M 603
            G W+ V  +     + G+       S      I  GS+    L+ DK+  ++   +  M
Sbjct: 348 TGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAM 407

Query: 604 LDEI-------DAL-----LEKSGFVPDTSEVLYDMDEEWKEGALSHHSE--KLAIAYGL 649
           +  +       +AL     + + GF PD +  +  +     E AL    E    AI  GL
Sbjct: 408 IGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGL 467

Query: 650 ISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREI 685
           +  + G    +V     CGN   A ++   +  R +
Sbjct: 468 VDLRVGNA--LVHMYAKCGNTMYAKQVFDDMVERNV 501


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 266/629 (42%), Positives = 404/629 (64%), Gaps = 7/629 (1%)

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           A  VF+ + E N V W  +I   +       AI  ++ M LSG+VP+ +T+  +L +C +
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ---NGELESARLVFNKSSLRDAVSY 199
           +  ++ GKQ+H+ V++LGL  D  V  SL++MYA+   +G ++ +R VF +    + +S+
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 200 TALITGYASRGYLD-DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           TA+IT YA  G  D +A +LF +M     +  PN  +  +VL AC ++     G  V S 
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMI--SGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 181

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
               G+ S   V N+LI MY++ G +  AR  F+ + +++++S+N ++ GY      +EA
Sbjct: 182 AVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEA 241

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
            +LF ++  + I  +  TF S+L   A +GA+  G+ IH  + K   K +N  +  +LI 
Sbjct: 242 FLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYK-SNQCICNALIS 300

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
           MY++CGNI+AA QVF+ M  + + SW +MI+G A HG A +AL +F +M+  G +P++IT
Sbjct: 301 MYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEIT 360

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
           +V VLSAC+H G++  G+++FN+M +++ I P+++HY CMVDLLGR+GL  EA   + +M
Sbjct: 361 YVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 420

Query: 499 EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVA 558
            +  DA +W +LLGACRVHG  ELG   A+ +LE EP++P AY+LLSN++A AG+W DV 
Sbjct: 421 PLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVV 480

Query: 559 TIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVP 618
            IR  + ++ + K  GCS IEV + VH F VG+  HPQ+  IY+ LD++ + +++ G++P
Sbjct: 481 KIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIP 540

Query: 619 DTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLIS 678
           DT  VL+D++EE KE  L  HSEK+A+A+GLIST     IRI KNLRVCG+CH+A K IS
Sbjct: 541 DTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYIS 600

Query: 679 KIFNREIIARDRNRFHHFKDGNCSCNDYW 707
               REI+ RD NRFHH K+G CSCNDYW
Sbjct: 601 MATGREIVVRDSNRFHHIKNGVCSCNDYW 629



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/408 (30%), Positives = 217/408 (53%), Gaps = 10/408 (2%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICA-VSPFGDLSYALLVFETI 90
           ++LS CT +  +   KQ+HS++I+ GL         L+++ A  +  G +  +  VFE +
Sbjct: 56  SVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQM 115

Query: 91  REPNQVIWNNIIRGHSLSSS-PVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG 149
            E N + W  II  ++ S      AI+ + +MI     PN ++F  +LK+C  +S    G
Sbjct: 116 PEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTG 175

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           +Q++++ +KLG+ S   V  SLI+MYA++G +E AR  F+    ++ VSY A++ GYA  
Sbjct: 176 EQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKN 235

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
              ++A  LF+E  I +     +  T  ++LS  A +G++  G  +   +   G  SN  
Sbjct: 236 LKSEEAFLLFNE--IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQC 293

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           + NALI MYS+CG++  A  +F  +E R+VISW  MI G+        AL +F +ML++ 
Sbjct: 294 ICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETG 353

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
            +PN++T+++VL AC+++G +  G+     + K H  +  +  +  ++D+  + G +  A
Sbjct: 354 TKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEA 413

Query: 390 EQVFDGMGYKTLA-SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
            +  + M     A  W  ++    +HG  +      + MI E  +PDD
Sbjct: 414 MEFINSMPLMADALVWRTLLGACRVHGNTELGRHA-AEMILEQ-EPDD 459


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 270/659 (40%), Positives = 410/659 (62%), Gaps = 7/659 (1%)

Query: 53  IIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPV 112
           ++KTG   +   +   +    V   GDL  A  VFE + E N V W  +I          
Sbjct: 194 VVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAG 253

Query: 113 VAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLI 172
            AI  ++ MILSG+ P+ +T   ++ +CA +  +  G+Q+H+  ++ GL  D  V   LI
Sbjct: 254 EAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLI 313

Query: 173 NMYAQ---NGELESARLVFNKSSLRDAVSYTALITGYASRG-YLDDARQLFDEMPIREEN 228
           NMYA+   +G + +AR +F++    +  S+TA+ITGY  +G Y ++A  LF  M +   +
Sbjct: 314 NMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMIL--TH 371

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288
            +PN  T  + L ACA++ +L +G  V +     G  S   V N+LI MY++ G +  AR
Sbjct: 372 VIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDAR 431

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
             F+ + ++++IS+N +I  Y    + +EAL LF ++    +  +  TF S+L   A +G
Sbjct: 432 KAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIG 491

Query: 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI 408
            +  G+ IHA + K+  KLN  S+  +LI MY++CGNI++A QVF+ M  + + SW ++I
Sbjct: 492 TIGKGEQIHARVIKSGLKLNQ-SVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSII 550

Query: 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
           +G A HG A +AL LF +M+ EG++P+ +T++ VLSAC+H GL++ G ++F +M  ++ +
Sbjct: 551 TGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGV 610

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
            P+++HY CMVD+LGR+G   EA   + +M  K DA +W + LGACRVHG LELG+  AK
Sbjct: 611 IPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAK 670

Query: 529 HLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFL 588
            ++E EP +P AY+LLSN+YA   +WD+V+ IR  + +K + K  GCS +EV + VH+F 
Sbjct: 671 MIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFY 730

Query: 589 VGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYG 648
           VGD  HP++  IY+ L  +   ++K G+VP+   VL+D++EE KE  L  HSEK+A+A+G
Sbjct: 731 VGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFG 790

Query: 649 LISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           LIST     IR+ KNLR+CG+CHSA K IS    REII RD NRFHH KDG CSCN+YW
Sbjct: 791 LISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 160/496 (32%), Positives = 248/496 (50%), Gaps = 23/496 (4%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
            L KC   ++      VH ++ ++ L      L+ LI +   S  G    A  +F+ +  
Sbjct: 72  FLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISL--YSKCGQWEKATSIFQLMGS 129

Query: 93  PNQVI-WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
              +I W+ ++   + ++    A+  +V MI +G+ PN Y F    ++C+    +S G  
Sbjct: 130 SRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDS 189

Query: 152 IHAHVLKLG-LESDPFVHTSLINMYAQ-NGELESARLVFNKSSLRDAVSYTALITGYASR 209
           I   V+K G L+SD  V   LI+M+ +  G+L SA  VF K   R+AV++T +IT     
Sbjct: 190 IFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQF 249

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
           GY  +A  LF EM +    + P+  T+  V+SACA+M  L LG  + S    HGL  +  
Sbjct: 250 GYAGEAIDLFLEMIL--SGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRC 307

Query: 270 VTNALIDMYSKC---GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY-KEALMLFRQM 325
           V   LI+MY+KC   G +  AR +F+ I   +V SW  MI GY     Y +EAL LFR M
Sbjct: 308 VGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGM 367

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK-NHQKLNNVSLWTSLIDMYAKCG 384
           + +++ PN  TF S L ACA L AL +G+ +  +  K     +N V+   SLI MYA+ G
Sbjct: 368 ILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVA--NSLISMYARSG 425

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
            I  A + FD +  K L S+N +I   A +  +++AL LF+ +  +G+     TF  +LS
Sbjct: 426 RIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLS 485

Query: 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC--MVDLLGRAGLFDEAEALLKTMEMKP 502
                G +  G Q    +I   K   KL    C  ++ +  R G  + A  + + ME + 
Sbjct: 486 GAASIGTIGKGEQIHARVI---KSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDR- 541

Query: 503 DAAIWTSLLGACRVHG 518
           +   WTS++     HG
Sbjct: 542 NVISWTSIITGFAKHG 557



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 141/515 (27%), Positives = 231/515 (44%), Gaps = 47/515 (9%)

Query: 114 AIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLIN 173
           AI     M+  G  P+  T+   LK C +  +   G  +H  + +  L+ D     SLI+
Sbjct: 50  AISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLIS 109

Query: 174 MYAQNGELESARLVFN-KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPN 232
           +Y++ G+ E A  +F    S RD +S++A+++ +A+       R L   + + E  + PN
Sbjct: 110 LYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNM--GFRALLTFVDMIENGYYPN 167

Query: 233 ESTVVTVLSACAHMGSLELGNWVCSLIEGHG-LGSNLHVTNALIDMYSKC-GDLVKARDL 290
           E        AC+    + +G+ +   +   G L S++ V   LIDM+ K  GDLV A  +
Sbjct: 168 EYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKV 227

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350
           FE + +R+ ++W +MI          EA+ LF +M+ S  EP+  T   V+ ACA +  L
Sbjct: 228 FEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELL 287

Query: 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC---GNIKAAEQVFDGMGYKTLASWNAM 407
            LG+ +H+   ++   L+   +   LI+MYAKC   G++ AA ++FD +    + SW AM
Sbjct: 288 LLGQQLHSQAIRHGLTLDRC-VGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAM 346

Query: 408 ISGLAMHGKAD-KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF------- 459
           I+G    G  D +AL LF  MI   + P+  TF   L AC +   L IG Q F       
Sbjct: 347 ITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLG 406

Query: 460 --------NAMIQDYKISPKLQ---------------HYGCMVDLLGRAGLFDEAEALLK 496
                   N++I  Y  S ++                 Y  ++D   +    +EA  L  
Sbjct: 407 FSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFN 466

Query: 497 TME---MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE-NPGAYVLLSNMYAGAG 552
            +E   M   A  + SLL      G +  GE +   +++   + N      L +MY+  G
Sbjct: 467 EIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCG 526

Query: 553 RWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF 587
             +    +   + D   + V   +SI  G   H F
Sbjct: 527 NIESAFQVFEDMED---RNVISWTSIITGFAKHGF 558


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 266/629 (42%), Positives = 404/629 (64%), Gaps = 7/629 (1%)

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           A  VF+ + E N V W  +I   +       AI  ++ M LSG+VP+ +T+  +L +C +
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ---NGELESARLVFNKSSLRDAVSY 199
           +  ++ GKQ+H+ V++LGL  D  V  SL++MYA+   +G ++ +R VF +    + +S+
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 200 TALITGYASRGYLD-DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           TA+IT YA  G  D +A +LF +M     +  PN  +  +VL AC ++     G  V S 
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMI--SGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 186

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
               G+ S   V N+LI MY++ G +  AR  F+ + +++++S+N ++ GY      +EA
Sbjct: 187 AVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEA 246

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
            +LF ++  + I  +  TF S+L   A +GA+  G+ IH  + K   K +N  +  +LI 
Sbjct: 247 FLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYK-SNQCICNALIS 305

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
           MY++CGNI+AA QVF+ M  + + SW +MI+G A HG A +AL +F +M+  G +P++IT
Sbjct: 306 MYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEIT 365

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
           +V VLSAC+H G++  G+++FN+M +++ I P+++HY CMVDLLGR+GL  EA   + +M
Sbjct: 366 YVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 425

Query: 499 EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVA 558
            +  DA +W +LLGACRVHG  ELG   A+ +LE EP++P AY+LLSN++A AG+W DV 
Sbjct: 426 PLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVV 485

Query: 559 TIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVP 618
            IR  + ++ + K  GCS IEV + VH F VG+  HPQ+  IY+ LD++ + +++ G++P
Sbjct: 486 KIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIP 545

Query: 619 DTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLIS 678
           DT  VL+D++EE KE  L  HSEK+A+A+GLIST     IRI KNLRVCG+CH+A K IS
Sbjct: 546 DTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYIS 605

Query: 679 KIFNREIIARDRNRFHHFKDGNCSCNDYW 707
               REI+ RD NRFHH K+G CSCNDYW
Sbjct: 606 MATGREIVVRDSNRFHHIKNGVCSCNDYW 634



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/408 (30%), Positives = 217/408 (53%), Gaps = 10/408 (2%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICA-VSPFGDLSYALLVFETI 90
           ++LS CT +  +   KQ+HS++I+ GL         L+++ A  +  G +  +  VFE +
Sbjct: 61  SVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQM 120

Query: 91  REPNQVIWNNIIRGHSLSSS-PVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG 149
            E N + W  II  ++ S      AI+ + +MI     PN ++F  +LK+C  +S    G
Sbjct: 121 PEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTG 180

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           +Q++++ +KLG+ S   V  SLI+MYA++G +E AR  F+    ++ VSY A++ GYA  
Sbjct: 181 EQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKN 240

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
              ++A  LF+E  I +     +  T  ++LS  A +G++  G  +   +   G  SN  
Sbjct: 241 LKSEEAFLLFNE--IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQC 298

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           + NALI MYS+CG++  A  +F  +E R+VISW  MI G+        AL +F +ML++ 
Sbjct: 299 ICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETG 358

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
            +PN++T+++VL AC+++G +  G+     + K H  +  +  +  ++D+  + G +  A
Sbjct: 359 TKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEA 418

Query: 390 EQVFDGMGYKTLA-SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
            +  + M     A  W  ++    +HG  +      + MI E  +PDD
Sbjct: 419 MEFINSMPLMADALVWRTLLGACRVHGNTELGRHA-AEMILEQ-EPDD 464


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 277/659 (42%), Positives = 406/659 (61%), Gaps = 5/659 (0%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           +H+ + K G H   F  + LI+  A S  G++  A  VF+ I   + V W  ++  ++ +
Sbjct: 158 LHACVYKLGHHADAFVGTALID--AYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAEN 215

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVH 168
                +++ + +M + G+ PN +T    LKSC  + A + GK +H   LK   + D FV 
Sbjct: 216 CFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVG 275

Query: 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
            +L+ +YA++GE+  A+ +F +    D + ++ +I  YA      +A  LF  + +R+ +
Sbjct: 276 IALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLF--LRMRQTS 333

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288
            VPN  T  +VL ACA   SL+LG  + S +   GL SN+ V+NA++D+Y+KCG++  + 
Sbjct: 334 VVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSM 393

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
            LFE +  R+ ++WN +I GY    D + A+ LF  ML+ +++P +VT+ SVL A A L 
Sbjct: 394 KLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLA 453

Query: 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI 408
           AL+ G  IH+   K     + V +  SLIDMYAKCG I  A   FD M  +   SWNAMI
Sbjct: 454 ALEPGLQIHSLTIKTMYNKDTV-VANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMI 512

Query: 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
            G +MHG + +AL+LF  M     +P+ +TFVGVLSAC++AGLL  G+ +F +M +DY I
Sbjct: 513 CGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDI 572

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
            P ++HY CMV LLGR G FDEA  L+  +  +P   +W +LLGAC +H +++LG   A+
Sbjct: 573 KPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQ 632

Query: 529 HLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFL 588
           H+LE+EP +   +VLLSNMYA AGRWD+VA +R  +  K ++K PG S +E   VVH F 
Sbjct: 633 HVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHYFS 692

Query: 589 VGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYG 648
           VGD  HP  K I  ML+ ++     +G+VPD + VL D+ ++ KE  L  HSE+LA+AYG
Sbjct: 693 VGDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLLDVQDDEKERHLWVHSERLALAYG 752

Query: 649 LISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           LI T    +IRI+KNLR+C +CH+  KLISK+  REI+ RD NRFHHF+ G CSC DYW
Sbjct: 753 LIRTPLSCSIRIIKNLRICIDCHTVMKLISKVVQREIVIRDINRFHHFRHGVCSCGDYW 811



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 143/473 (30%), Positives = 246/473 (52%), Gaps = 9/473 (1%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K +H  I+K G     FA + L+     S    L  A  +F+ + + N + +  + +G+S
Sbjct: 55  KHLHCHILKRGTSLDLFAQNILLNFYVQS--NSLQDASKLFDEMPQTNTISFVTLAQGYS 112

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
                  A+ F +R+   G   N + F  +LK    +        +HA V KLG  +D F
Sbjct: 113 RDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAF 172

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V T+LI+ Y+  G ++ AR VF+    +D VS+T ++  YA   + +++ QLF++M I  
Sbjct: 173 VGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIM- 231

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
             + PN  T+   L +C  + +  +G  V           +L V  AL+++Y+K G+++ 
Sbjct: 232 -GYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIID 290

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A+ LFE + K D+I W++MI  Y  +   KEAL LF +M Q+++ PN+ TF SVL ACA 
Sbjct: 291 AQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACAS 350

Query: 347 LGALDLGKWIHAYIDKNHQKLN-NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
             +LDLGK IH+ + K    LN NV +  +++D+YAKCG I+ + ++F+ +  +   +WN
Sbjct: 351 SVSLDLGKQIHSCVLKF--GLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWN 408

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
            +I G    G  ++A++LF+ M+   +QP ++T+  VL A      L+ G Q  +  I+ 
Sbjct: 409 TIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKT 468

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
                 +     ++D+  + G  ++A      M  K D   W +++    +HG
Sbjct: 469 MYNKDTVV-ANSLIDMYAKCGRINDARLTFDKMN-KRDEVSWNAMICGYSMHG 519



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 187/386 (48%), Gaps = 9/386 (2%)

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           GK +H H+LK G   D F    L+N Y Q+  L+ A  +F++    + +S+  L  GY+ 
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
                 A      + I +E    N     T+L     M    L   + + +   G  ++ 
Sbjct: 114 DHQFHQALHFI--LRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADA 171

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
            V  ALID YS  G++  AR +F+ I  +D++SW  M+  Y     Y+E+L LF QM   
Sbjct: 172 FVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIM 231

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
             +PN+ T    L +C  L A ++GK +H    K     +++ +  +L+++YAK G I  
Sbjct: 232 GYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYD-HDLFVGIALLELYAKSGEIID 290

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A+++F+ M    L  W+ MI+  A   ++ +AL LF RM    + P++ TF  VL AC  
Sbjct: 291 AQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACAS 350

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA--AI 506
           +  LD+G+Q  + +++ + ++  +     ++D+  + G   E E  +K  E  PD     
Sbjct: 351 SVSLDLGKQIHSCVLK-FGLNSNVFVSNAIMDVYAKCG---EIENSMKLFEELPDRNDVT 406

Query: 507 WTSLLGACRVHGRLELGESVAKHLLE 532
           W +++      G  E   ++  H+LE
Sbjct: 407 WNTIIVGYVQLGDGERAMNLFTHMLE 432


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 275/698 (39%), Positives = 414/698 (59%), Gaps = 44/698 (6%)

Query: 47  KQVHSQIIKT-GLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           KQ+H+Q I+T  L +T    S  I I   +    L  ALL+F+T++ P  + W ++IR  
Sbjct: 25  KQLHAQFIRTQSLSHT----SASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCF 80

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
           +  S    A+  +V M  SG  P+   FP +LKSC  +  +  G+ +H  +++LG++ D 
Sbjct: 81  TDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDL 140

Query: 166 FVHTSLINMYAQ-----------------------NGE-------------LESARLVFN 189
           +   +L+NMYA+                       +G+             ++S R VF 
Sbjct: 141 YTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFE 200

Query: 190 KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL 249
               +D VSY  +I GYA  G  +DA ++  EM     +  P+  T+ +VL   +    +
Sbjct: 201 VMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGT--TDLKPDSFTLSSVLPIFSEYVDV 258

Query: 250 ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309
             G  +   +   G+ S++++ ++L+DMY+K   +  +  +F  +  RD ISWN ++ GY
Sbjct: 259 IKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGY 318

Query: 310 THTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNN 369
                Y EAL LFRQM+ + ++P  V F SV+PACA+L  L LGK +H Y+ +     +N
Sbjct: 319 VQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFG-SN 377

Query: 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG 429
           + + ++L+DMY+KCGNIKAA ++FD M      SW A+I G A+HG   +A+SLF  M  
Sbjct: 378 IFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKR 437

Query: 430 EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489
           +G++P+ + FV VL+AC+H GL+D    YFN+M + Y ++ +L+HY  + DLLGRAG  +
Sbjct: 438 QGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLE 497

Query: 490 EAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549
           EA   +  M ++P  ++W++LL +C VH  LEL E VA+ +  ++ EN GAYVL+ NMYA
Sbjct: 498 EAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYA 557

Query: 550 GAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDA 609
             GRW ++A +R R+  KG++K P CS IE+ +  H F+ GD+ HP    I E L  +  
Sbjct: 558 SNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVME 617

Query: 610 LLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGN 669
            +EK G+V DTS VL+D+DEE K   L  HSE+LA+A+G+I+T+PGTTIR+ KN+R+C +
Sbjct: 618 QMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTD 677

Query: 670 CHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           CH A K ISKI  REII RD +RFHHF  GNCSC DYW
Sbjct: 678 CHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 202/422 (47%), Gaps = 48/422 (11%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTS---LINMYAQNGELESARLVFNKSS 192
           ++K+  +I + S+ KQ+HA  ++    +    HTS   +I++Y     L  A L+F    
Sbjct: 11  LIKNPTRIKSKSQAKQLHAQFIR----TQSLSHTSASIVISIYTNLKLLHEALLLFKTLK 66

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
               +++ ++I  +  +     A   F EM  R     P+ +   +VL +C  M  L  G
Sbjct: 67  SPPVLAWKSVIRCFTDQSLFSKALASFVEM--RASGRCPDHNVFPSVLKSCTMMMDLRFG 124

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSK-----------------------CGDL-VKA- 287
             V   I   G+  +L+  NAL++MY+K                        GD  VKA 
Sbjct: 125 ESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAE 184

Query: 288 -----------RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVT 336
                      R +FE + ++DV+S+N +I GY  +  Y++AL + R+M  ++++P+  T
Sbjct: 185 TCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFT 244

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
             SVLP  +    +  GK IH Y+ +     ++V + +SL+DMYAK   I+ +E+VF  +
Sbjct: 245 LSSVLPIFSEYVDVIKGKEIHGYVIRKGID-SDVYIGSSLVDMYAKSARIEDSERVFSRL 303

Query: 397 GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR 456
             +   SWN++++G   +G+ ++AL LF +M+   ++P  + F  V+ AC H   L +G+
Sbjct: 304 YCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGK 363

Query: 457 QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRV 516
           Q    +++       +     +VD+  + G    A  +   M +  D   WT+++    +
Sbjct: 364 QLHGYVLRG-GFGSNIFIASALVDMYSKCGNIKAARKIFDRMNV-LDEVSWTAIIMGHAL 421

Query: 517 HG 518
           HG
Sbjct: 422 HG 423



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 148/262 (56%), Gaps = 5/262 (1%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L + S+  ++   K++H  +I+ G+ +  +  S L+++ A S    +  +  VF  +   
Sbjct: 249 LPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKS--ARIEDSERVFSRLYCR 306

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           + + WN+++ G+  +     A++ + +M+ +   P    F  ++ +CA ++ +  GKQ+H
Sbjct: 307 DGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLH 366

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
            +VL+ G  S+ F+ ++L++MY++ G +++AR +F++ ++ D VS+TA+I G+A  G+  
Sbjct: 367 GYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGH 426

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL-ELGNWVCSLIEGHGLGSNLHVTN 272
           +A  LF+EM  + +   PN+   V VL+AC+H+G + E   +  S+ + +GL   L    
Sbjct: 427 EAVSLFEEM--KRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYA 484

Query: 273 ALIDMYSKCGDLVKARDLFESI 294
           A+ D+  + G L +A +    +
Sbjct: 485 AVADLLGRAGKLEEAYNFISKM 506


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 280/662 (42%), Positives = 413/662 (62%), Gaps = 11/662 (1%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSL 107
           QVH+ +IK+GL +T F  + ++ + + S    +S A  VF+++   N V WN++I G   
Sbjct: 214 QVHTMVIKSGLDSTIFVGNSMVNMYSKSLM--VSDAKAVFDSMENRNAVSWNSMIAGFVT 271

Query: 108 SSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFV 167
           +   + A + + RM L G       F  ++K CA I  +S  KQ+H  V+K G + D  +
Sbjct: 272 NGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNI 331

Query: 168 HTSLINMYAQNGELESA-RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
            T+L+  Y++  E++ A +L      +++ VS+TA+I+GY   G  D A  LF +M  R 
Sbjct: 332 KTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQM--RR 389

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           E   PN  T  T+L+A A +   ++     +L+      ++  V  AL D YSK GD  +
Sbjct: 390 EGVRPNHFTYSTILTANAAVSPSQIH----ALVVKTNYENSPSVGTALSDSYSKIGDANE 445

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A  +FE I+++D+++W+ M+ GY    D + A+ +F Q+ +  +EPN+ TF SVL ACA 
Sbjct: 446 AAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAA 505

Query: 347 -LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
              +++ GK  H+   K+    N + + ++L+ MYAK GNI++A +VF     + L SWN
Sbjct: 506 PTASVEQGKQFHSCSIKSGFS-NALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWN 564

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
           +MISG A HG   K+L +F  M  + L+ D ITF+GV+SAC HAGL++ G++YF+ M++D
Sbjct: 565 SMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKD 624

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
           Y I P ++HY CMVDL  RAG+ ++A  L+  M     A IW +LL ACRVH  ++LGE 
Sbjct: 625 YHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGEL 684

Query: 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVH 585
            A+ L+ L+P++  AYVLLSN+YA AG W + A +R  ++ K +KK  G S IEV +   
Sbjct: 685 AAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTF 744

Query: 586 EFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAI 645
            F+ GD  HPQS  IY  L+E+   L+ +G+ PDT  VL+D++EE KE  LS HSE+LAI
Sbjct: 745 SFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAI 804

Query: 646 AYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCND 705
           A+GLI+T PGT I+IVKNLRVCG+CH+  KLISKI  R+I+ RD NRFHHFK G+CSC D
Sbjct: 805 AFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGD 864

Query: 706 YW 707
           YW
Sbjct: 865 YW 866



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 144/495 (29%), Positives = 256/495 (51%), Gaps = 19/495 (3%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           KQVH Q IK G        + L+++   +    +     VF+ +R  N V W +++ G+ 
Sbjct: 112 KQVHCQCIKCGFVEDVSVGTSLVDMYMKTE--SVEDGERVFDEMRVKNVVSWTSLLAGYR 169

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +     A+K + +M L G  PN +TF  +L   A   A+ +G Q+H  V+K GL+S  F
Sbjct: 170 QNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIF 229

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V  S++NMY+++  +  A+ VF+    R+AVS+ ++I G+ + G   +A +LF  M  R 
Sbjct: 230 VGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRM--RL 287

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWV-CSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
           E     ++   TV+  CA++  +     + C +I+ +G   +L++  AL+  YSKC ++ 
Sbjct: 288 EGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIK-NGSDFDLNIKTALMVAYSKCSEID 346

Query: 286 KARDLFESIEK-RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
            A  LF  +   ++V+SW  +I GY        A+ LF QM +  + PN  T+ ++L A 
Sbjct: 347 DAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTAN 406

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
           A +        IHA + K + + N+ S+ T+L D Y+K G+   A ++F+ +  K + +W
Sbjct: 407 AAVSP----SQIHALVVKTNYE-NSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAW 461

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH-AGLLDIGRQYFNAMI 463
           +AM+SG A  G  + A+ +F ++  EG++P++ TF  VL+AC      ++ G+Q+ +  I
Sbjct: 462 SAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSI 521

Query: 464 QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG----R 519
           +    S  L     +V +  + G  + A  + K  ++  D   W S++     HG     
Sbjct: 522 KS-GFSNALCVSSALVTMYAKRGNIESANEVFKR-QVDRDLVSWNSMISGYAQHGCGKKS 579

Query: 520 LELGESVAKHLLELE 534
           L++ E +    LEL+
Sbjct: 580 LKIFEEMRSKNLELD 594



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 129/444 (29%), Positives = 227/444 (51%), Gaps = 19/444 (4%)

Query: 114 AIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLIN 173
           A+  ++ +  SG   +  +   +LK C  +     GKQ+H   +K G   D  V TSL++
Sbjct: 76  ALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVD 135

Query: 174 MYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
           MY +   +E    VF++  +++ VS+T+L+ GY   G  + A +LF +M +  E   PN 
Sbjct: 136 MYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQL--EGIKPNP 193

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
            T   VL   A  G++E G  V +++   GL S + V N++++MYSK   +  A+ +F+S
Sbjct: 194 FTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDS 253

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
           +E R+ +SWN MI G+       EA  LF +M    ++     F +V+  CA +  +   
Sbjct: 254 MENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFA 313

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM-GYKTLASWNAMISGLA 412
           K +H  + KN     ++++ T+L+  Y+KC  I  A ++F  M G + + SW A+ISG  
Sbjct: 314 KQLHCQVIKNGSDF-DLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYV 372

Query: 413 MHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI--QDYKISP 470
            +G+ D+A++LF +M  EG++P+  T+  +L+A N A    +     +A++   +Y+ SP
Sbjct: 373 QNGRTDRAMNLFCQMRREGVRPNHFTYSTILTA-NAA----VSPSQIHALVVKTNYENSP 427

Query: 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHL 530
            +     + D   + G  +EA  + + ++ K D   W+++L      G +   E   K  
Sbjct: 428 SVGT--ALSDSYSKIGDANEAAKIFELIDEK-DIVAWSAMLSGYAQMGDI---EGAVKIF 481

Query: 531 LELEPE--NPGAYVLLSNMYAGAG 552
           L+L  E   P  +   S + A A 
Sbjct: 482 LQLAKEGVEPNEFTFSSVLNACAA 505



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 116/404 (28%), Positives = 212/404 (52%), Gaps = 18/404 (4%)

Query: 40  CTNMQNI---KQVHSQIIKTGLHNTQFALS-KLIEICAVSPFGDLSYALLVFETIREPNQ 95
           C N++ +   KQ+H Q+IK G   + F L+ K   + A S   ++  A  +F  +     
Sbjct: 304 CANIKEMSFAKQLHCQVIKNG---SDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQN 360

Query: 96  VI-WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
           V+ W  II G+  +     A+  + +M   G  PN +T+  IL + A +S      QIHA
Sbjct: 361 VVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSP----SQIHA 416

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
            V+K   E+ P V T+L + Y++ G+   A  +F     +D V+++A+++GYA  G ++ 
Sbjct: 417 LVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEG 476

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAH-MGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           A ++F  + + +E   PNE T  +VL+ACA    S+E G    S     G  + L V++A
Sbjct: 477 AVKIF--LQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSA 534

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           L+ MY+K G++  A ++F+    RD++SWN MI GY      K++L +F +M   N+E +
Sbjct: 535 LVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELD 594

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
            +TF+ V+ AC + G ++ G+     + K++  +  +  ++ ++D+Y++ G ++ A  + 
Sbjct: 595 GITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLI 654

Query: 394 DGMGYKTLAS-WNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           + M +   A+ W  +++   +H           ++I   LQP D
Sbjct: 655 NKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLI--SLQPQD 696


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 279/722 (38%), Positives = 420/722 (58%), Gaps = 56/722 (7%)

Query: 35  ALLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ++L KC  + N++   QVH+Q++  G+   +F  S+L+E+   +  G +  A  +F+ + 
Sbjct: 15  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQT--GCVEDARRMFDKMS 72

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           E N   W  I+  +         IK +  M+  G  P+ + FP + K+C+++     GK 
Sbjct: 73  ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 132

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           ++ ++L +G E +  V  S+++M+ + G ++ AR  F +   +D   +  +++GY S+G 
Sbjct: 133 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGE 192

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV---CSLIEGHGLGSNL 268
              A  +F +M +  E   PN  T+ + +SAC ++  L  G  +   C  +E   L S+L
Sbjct: 193 FKKALNVFRKMVL--EGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEE--LDSDL 248

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG--GYTHTSDYKEALMLF---- 322
            V N+L+D Y+KC  +  AR  F  I++ D++SWN M+   G+T   D K AL  F    
Sbjct: 249 LVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMH 308

Query: 323 -------------------------------------RQMLQSNIEPNDVTFLSVLPACA 345
                                                R+M  SN+E N VT +S LPAC+
Sbjct: 309 IACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACS 368

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
            L AL  GK IH +I +      N  L  SLIDMY +CG+I+ + ++FD M  + L SWN
Sbjct: 369 KLAALRQGKEIHQFIIRCGLDTCNFIL-NSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWN 427

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
            MIS   MHG    A++LF +    GL+P+ ITF  +LSAC+H+GL++ G +YF  M  +
Sbjct: 428 VMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTE 487

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
           Y + P ++ Y CMVDLL RAG F+E    ++ M  +P+AA+W SLLGACR+H   +L E 
Sbjct: 488 YAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEY 547

Query: 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVH 585
            A++L ELEP++ G YVL++N+Y+ AGRW+D A IR  + ++G+ K PGCS IEV   +H
Sbjct: 548 AARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLH 607

Query: 586 EFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAI 645
            F+VGD  HP  + I   ++ +   +++ G+VPDT+ VL D+DE+ KE +L  HSEK+A+
Sbjct: 608 SFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIAL 667

Query: 646 AYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCND 705
           A+GLIST  GT +RI+KNLRVCG+CHSATK ISK+  R+II RD  RFHHF DG CSC D
Sbjct: 668 AFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGD 727

Query: 706 YW 707
           YW
Sbjct: 728 YW 729



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 100/217 (46%), Gaps = 12/217 (5%)

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
           + S+L  C  L  L LG  +HA +  N   +    L + L+++Y + G ++ A ++FD M
Sbjct: 13  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEF-LGSRLLEVYCQTGCVEDARRMFDKM 71

Query: 397 GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR 456
             + + SW A++      G  ++ + LF  M+ EG++PD   F  V  AC+      +G+
Sbjct: 72  SERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGK 131

Query: 457 QYFNAMIQDYKISPKLQHYGC----MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
                 + DY +S   +   C    ++D+  + G  D A    + +E K D  +W  ++ 
Sbjct: 132 D-----VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFMWNIMVS 185

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549
                G  +   +V + ++ LE   P +  + S + A
Sbjct: 186 GYTSKGEFKKALNVFRKMV-LEGVKPNSITIASAVSA 221


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 310/793 (39%), Positives = 441/793 (55%), Gaps = 104/793 (13%)

Query: 9   TLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKL 68
           T S  IL  P  SDP    LQ   SL      T     K +H++IIK GLH   F ++ L
Sbjct: 3   TSSSQILTSP--SDPYTSFLQR--SLKFKDPFTG----KSIHARIIKAGLHLGVFLMNNL 54

Query: 69  IEICAVSPF-----------------------------GDLSYALLVFETIREPNQVIWN 99
           +   A + F                             G L  A  VFE + EP+ V W 
Sbjct: 55  MNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWT 114

Query: 100 NIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKL 159
            +I G++       AI  +  M+     P  +T   +L SCA +  +  G+++H+ V+K 
Sbjct: 115 AMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKH 174

Query: 160 GLESDPFVHTSLINMYAQNGELESARLVFNKSSL-------------------------- 193
           GL S   V  SL+NMYA++G+  +A++VF++  L                          
Sbjct: 175 GLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQF 234

Query: 194 -----RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS 248
                RD VS+ A+I+GY   G+  +A  +F +M + + +  P++ T+ + LSACA++ +
Sbjct: 235 EQMIERDVVSWNAMISGYNQHGFDREALDIFSKM-LMDSSSKPDKFTLASALSACANLEN 293

Query: 249 LELG-------------------NWVCSLIEGHG------------LGSNLHVT--NALI 275
           L+LG                   N + S+    G            + SNL V    AL+
Sbjct: 294 LKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALL 353

Query: 276 DMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV 335
           D Y K GD+  AR +F+S+  RDV++W  MI GY      ++A+ LFR M++   +PN+ 
Sbjct: 354 DGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNY 413

Query: 336 TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
           T  ++L   + L +LD G+ IHA   ++    ++VS+  +LI MYAK G+I  A  VF+ 
Sbjct: 414 TLATMLSVSSSLASLDHGRQIHASATRSGNA-SSVSVSNALITMYAKSGSINDARWVFNL 472

Query: 396 MGYKT-LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
           + +K    +W +MI  LA HG  ++AL+LF RM+  G++PD IT+VGVLSAC H GL++ 
Sbjct: 473 IHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQ 532

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
           GR Y+N M   +KI P   HY CM+DL GRAGL  EA A ++ M ++PD   W SLL +C
Sbjct: 533 GRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASC 592

Query: 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPG 574
           +VH  +EL E  A+ LL +EPEN GAY  L+N+Y+  G+W++ A IR  + DKG+KK  G
Sbjct: 593 KVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQG 652

Query: 575 CSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEG 634
            S +++ + VH F V D +HPQ   IYEM+ +I   ++K GFVPDT  VL+D++EE KE 
Sbjct: 653 FSWVQIKNKVHIFGVDDGLHPQRDAIYEMMAKIWKEIKKMGFVPDTESVLHDLEEELKEQ 712

Query: 635 ALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFH 694
            LSHHSEKLAIA+GLI T   TT+RI+KNLRVC +CHSA K ISK+  REII RD  RFH
Sbjct: 713 ILSHHSEKLAIAFGLICTPENTTLRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFH 772

Query: 695 HFKDGNCSCNDYW 707
           HFK+G CSC DYW
Sbjct: 773 HFKNGLCSCRDYW 785


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  527 bits (1357), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 288/627 (45%), Positives = 381/627 (60%), Gaps = 86/627 (13%)

Query: 90  IREPN--QVIWNNIIRGHSLS--SSPVV--AIKFYVRMILSGFVPNTYTFPFILKSCAKI 143
           +  PN    +WNN+IR  + S   +P    A+  Y+RM L   +P+ +TFPF+L+S   I
Sbjct: 17  LSHPNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQS---I 73

Query: 144 SAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALI 203
           +    G+Q+HA +L LGL +DPFV TSLINMY+                           
Sbjct: 74  NTPHRGRQLHAQILLLGLANDPFVQTSLINMYS--------------------------- 106

Query: 204 TGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG 263
               S G    ARQ FDE+                           +L +W         
Sbjct: 107 ----SCGTPTFARQAFDEI------------------------TQPDLPSW--------- 129

Query: 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFR 323
                   NA+I   +K G +  AR LF+ + +++VISW+ MI GY    +YK AL LFR
Sbjct: 130 --------NAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFR 181

Query: 324 --QMLQ-SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMY 380
             Q L+ S + PN+ T  SVL ACA LGAL  GKW+HAYIDK   K++ V L TSLIDMY
Sbjct: 182 SLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKID-VVLGTSLIDMY 240

Query: 381 AKCGNIKAAEQVFDGMG-YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439
           AKCG+I+ A+ +FD +G  K + +W+AMI+  +MHG +++ L LF+RM+ +G++P+ +TF
Sbjct: 241 AKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTF 300

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME 499
           V VL AC H GL+  G +YF  M+ +Y +SP +QHYGCMVDL  RAG  ++A  ++K+M 
Sbjct: 301 VAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMP 360

Query: 500 MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559
           M+PD  IW +LL   R+HG +E  E     LLEL+P N  AYVLLSN+YA  GRW +V  
Sbjct: 361 MEPDVMIWGALLNGARIHGDVETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRH 420

Query: 560 IRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPD 619
           +R  +  +G+KK+PGCS +EV  V+ EF  GD  HP+  ++Y MLDEI   LEK G+  +
Sbjct: 421 LRDLMEVRGIKKLPGCSLVEVDGVIREFFAGDNSHPELLNLYVMLDEIMKRLEKHGYERN 480

Query: 620 TSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISK 679
           T EVL D+DEE KE ALS HSEKLAIAY  + T PGTTIRIVKNLR+C +CH A K+ISK
Sbjct: 481 TGEVLLDLDEEGKEFALSLHSEKLAIAYCFLRTSPGTTIRIVKNLRICSDCHVAIKIISK 540

Query: 680 IFNREIIARDRNRFHHFKDGNCSCNDY 706
            FNREII RD NRFHHFK+G CSC DY
Sbjct: 541 EFNREIIVRDCNRFHHFKNGLCSCKDY 567



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 158/318 (49%), Gaps = 41/318 (12%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +Q+H+QI+  GL N  F  + LI +   S  G  ++A   F+ I +P+   WN II  ++
Sbjct: 80  RQLHAQILLLGLANDPFVQTSLINM--YSSCGTPTFARQAFDEITQPDLPSWNAIIHANA 137

Query: 107 LSSSPVVAIKFYVRM----------ILSGFV------------------------PNTYT 132
            +    +A K + +M          ++ G+V                        PN +T
Sbjct: 138 KAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFT 197

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF-NKS 191
              +L +CA++ A+  GK +HA++ K G++ D  + TSLI+MYA+ G +E A+ +F N  
Sbjct: 198 MSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLG 257

Query: 192 SLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL 251
             +D ++++A+IT ++  G  ++  +LF  M    +   PN  T V VL AC H G +  
Sbjct: 258 PEKDVMAWSAMITAFSMHGLSEECLELFARM--VNDGVRPNAVTFVAVLCACVHGGLVSE 315

Query: 252 GN-WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGY 309
           GN +   ++  +G+   +     ++D+YS+ G +  A ++ +S+  + DV+ W  ++ G 
Sbjct: 316 GNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGA 375

Query: 310 THTSDYKEALMLFRQMLQ 327
               D +   +   ++L+
Sbjct: 376 RIHGDVETCEIAITKLLE 393


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  526 bits (1356), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 269/659 (40%), Positives = 410/659 (62%), Gaps = 7/659 (1%)

Query: 53  IIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPV 112
           +IKTG   +   +   +    V   GDL  A  VFE + E N V W  +I          
Sbjct: 194 VIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAG 253

Query: 113 VAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLI 172
            AI  ++ MI SG+ P+ +T   ++ +CA +  +  G+Q+H+  ++ GL  D  V   LI
Sbjct: 254 EAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLI 313

Query: 173 NMYAQ---NGELESARLVFNKSSLRDAVSYTALITGYASRG-YLDDARQLFDEMPIREEN 228
           NMYA+   +G + +AR +F++    +  S+TA+ITGY  +G Y ++A  LF  M +   +
Sbjct: 314 NMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMIL--TH 371

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288
            +PN  T  + L ACA++ +L +G  V +     G  S   V N+LI MY++ G +  AR
Sbjct: 372 VIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDAR 431

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
             F+ + ++++IS+N +I  Y    + +EAL LF ++    +  +  TF S+L   A +G
Sbjct: 432 KAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIG 491

Query: 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI 408
            +  G+ IHA + K+  KLN  S+  +LI MY++CGNI++A QVF+ M  + + SW ++I
Sbjct: 492 TIGKGEQIHARVIKSGLKLNQ-SVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSII 550

Query: 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
           +G A HG A +AL LF +M+ EG++P+++T++ VLSAC+H GL++ G ++F +M  ++ +
Sbjct: 551 TGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGV 610

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
            P+++HY C+VD+LGR+G   EA   + +M  K DA +W + LGACRVHG LELG+  AK
Sbjct: 611 IPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAK 670

Query: 529 HLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFL 588
            ++E EP +P AY+LLSN+YA   +WD+V+ IR  + +K + K  GCS +EV + VH+F 
Sbjct: 671 MIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFY 730

Query: 589 VGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYG 648
           VGD  HP++  IY+ L  +   ++K G+VP+   VL+D++EE KE  L  HSEK+A+A+G
Sbjct: 731 VGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFG 790

Query: 649 LISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           LIST     IR+ KNLR+CG+CHSA K IS    REII RD NRFHH KDG CSCN+YW
Sbjct: 791 LISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  208 bits (529), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 159/496 (32%), Positives = 246/496 (49%), Gaps = 23/496 (4%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
            L KC   ++      VH ++ ++ L      L+ LI +   S  G    A  +F  +  
Sbjct: 72  FLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISL--YSKCGQWEKATSIFRLMGS 129

Query: 93  PNQVI-WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
              +I W+ ++   + ++    A+  +V MI +G+ PN Y F    ++C+    +S G  
Sbjct: 130 SRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDS 189

Query: 152 IHAHVLKLG-LESDPFVHTSLINMYAQ-NGELESARLVFNKSSLRDAVSYTALITGYASR 209
           I   V+K G L+SD  V   LI+M+ +  G+L SA  VF K   R+AV++T +IT     
Sbjct: 190 IFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQF 249

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
           GY  +A  LF +M      + P+  T+  V+SACA+M  L LG  + S    HGL  +  
Sbjct: 250 GYAGEAIDLFLDMIF--SGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRC 307

Query: 270 VTNALIDMYSKC---GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY-KEALMLFRQM 325
           V   LI+MY+KC   G +  AR +F+ I   +V SW  MI GY     Y +EAL LFR M
Sbjct: 308 VGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGM 367

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK-NHQKLNNVSLWTSLIDMYAKCG 384
           + +++ PN  TF S L ACA L AL +G+ +  +  K     +N V+   SLI MYA+ G
Sbjct: 368 ILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVA--NSLISMYARSG 425

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
            I  A + FD +  K L S+N +I   A +  +++AL LF+ +  +G+     TF  +LS
Sbjct: 426 RIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLS 485

Query: 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC--MVDLLGRAGLFDEAEALLKTMEMKP 502
                G +  G Q    +I   K   KL    C  ++ +  R G  + A  + + ME + 
Sbjct: 486 GAASIGTIGKGEQIHARVI---KSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDR- 541

Query: 503 DAAIWTSLLGACRVHG 518
           +   WTS++     HG
Sbjct: 542 NVISWTSIITGFAKHG 557



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 141/515 (27%), Positives = 230/515 (44%), Gaps = 47/515 (9%)

Query: 114 AIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLIN 173
           AI     M+  G  P+  T+   LK C +  +   G  +H  + +  L+ D     SLI+
Sbjct: 50  AISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLIS 109

Query: 174 MYAQNGELESARLVFN-KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPN 232
           +Y++ G+ E A  +F    S RD +S++A+++ +A+       R L   + + E  + PN
Sbjct: 110 LYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNM--GFRALLTFVDMIENGYYPN 167

Query: 233 ESTVVTVLSACAHMGSLELGNWVCSLIEGHG-LGSNLHVTNALIDMYSKC-GDLVKARDL 290
           E        AC+    + +G+ +   +   G L S++ V   LIDM+ K  GDLV A  +
Sbjct: 168 EYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKV 227

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350
           FE + +R+ ++W +MI          EA+ LF  M+ S  EP+  T   V+ ACA +  L
Sbjct: 228 FEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELL 287

Query: 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC---GNIKAAEQVFDGMGYKTLASWNAM 407
            LG+ +H+   ++   L+   +   LI+MYAKC   G++ AA ++FD +    + SW AM
Sbjct: 288 LLGQQLHSQAIRHGLTLDRC-VGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAM 346

Query: 408 ISGLAMHGKAD-KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF------- 459
           I+G    G  D +AL LF  MI   + P+  TF   L AC +   L IG Q F       
Sbjct: 347 ITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLG 406

Query: 460 --------NAMIQDYKISPKLQ---------------HYGCMVDLLGRAGLFDEAEALLK 496
                   N++I  Y  S ++                 Y  ++D   +    +EA  L  
Sbjct: 407 FSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFN 466

Query: 497 TME---MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE-NPGAYVLLSNMYAGAG 552
            +E   M   A  + SLL      G +  GE +   +++   + N      L +MY+  G
Sbjct: 467 EIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCG 526

Query: 553 RWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF 587
             +    +   + D   + V   +SI  G   H F
Sbjct: 527 NIESAFQVFEDMED---RNVISWTSIITGFAKHGF 558


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  526 bits (1356), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 279/676 (41%), Positives = 401/676 (59%), Gaps = 15/676 (2%)

Query: 40  CTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQV 96
           C++ +++KQ   +H+ I++T L      L   + I   +   DL  A   F+ + +   V
Sbjct: 68  CSSSKDLKQGQLLHAMILETRLLEFDIILGTAL-ITMYARCRDLELARKTFDEMGKKTLV 126

Query: 97  IWNNIIRGHSLSSSPVVAIKFYVRMIL---SGFVPNTYTFPFILKSCAKISAISEGKQIH 153
            WN +I G+S +     A+K Y  M+     G  P+  TF   L +C  +  IS+G++I 
Sbjct: 127 TWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIE 186

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
           A  +  G  SD  V  +LINMY++ G LESAR VF++   RD +++  +I+GYA +G   
Sbjct: 187 ARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAAT 246

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
            A +LF  M   +    PN  T + +L+AC ++  LE G  +   +   G  S+L + N 
Sbjct: 247 QALELFQRMGPNDPK--PNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNV 304

Query: 274 LIDMYSKCGD-LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           L++MY+KC   L +AR +FE +  RDVI+WN++I  Y      K+AL +F+QM   N+ P
Sbjct: 305 LLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAP 364

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N++T  +VL ACA LGA   GK +HA I     K + V L  SL++MY +CG++     V
Sbjct: 365 NEITLSNVLSACAVLGAKRQGKAVHALIASGRCKAD-VVLENSLMNMYNRCGSLDDTVGV 423

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F  +  K+L SW+ +I+  A HG +   L  F  ++ EGL  DD+T V  LSAC+H G+L
Sbjct: 424 FAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGML 483

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
             G Q F +M+ D+ ++P  +H+ CMVDLL RAG  + AE L+  M   PDA  WTSLL 
Sbjct: 484 KEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLS 543

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYV-LLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
            C++H   +    VA  L ELE E+  + V LLSN+YA AGRWDDV   R R   +  +K
Sbjct: 544 GCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTRNR---RAARK 600

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
            PGCS IE+   VHEF+ GDK HP+ + I   +  +   ++ +G+VPD   VL+++ EE 
Sbjct: 601 NPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEE 660

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           KE  L +HSEKLAIAYGLIST PGT + IVKNLR C +CH+A K IS+I  R+I+ RD  
Sbjct: 661 KEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDST 720

Query: 692 RFHHFKDGNCSCNDYW 707
           RFHHF++G+CSC DYW
Sbjct: 721 RFHHFENGSCSCKDYW 736



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 166/557 (29%), Positives = 277/557 (49%), Gaps = 40/557 (7%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G ++ AL VF  I  PN V W  I+   + +     A+ +Y RM+L G  P+   F   +
Sbjct: 6   GSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAI 65

Query: 138 KSCAKISAISEGKQIHAHVLKLG-LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
             C+    + +G+ +HA +L+   LE D  + T+LI MYA+  +LE AR  F++   +  
Sbjct: 66  GVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTL 125

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIRE-ENFVPNESTVVTVLSACAHMGSLELGNWV 255
           V++ ALI GY+  G    A +++ +M  +  E   P+  T  + L AC  +G +  G  +
Sbjct: 126 VTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREI 185

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
            +     G  S+  V NALI+MYSKCG L  AR +F+ ++ RDVI+WN MI GY      
Sbjct: 186 EARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAA 245

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
            +AL LF++M  ++ +PN VTF+ +L AC  L  L+ G+ IH  + ++  + +++ +   
Sbjct: 246 TQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYE-SDLVIGNV 304

Query: 376 LIDMYAKC-GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
           L++MY KC  +++ A QVF+ M  + + +WN +I     +G+A  AL +F +M  E + P
Sbjct: 305 LLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAP 364

Query: 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494
           ++IT   VLSAC   G    G+   +A+I   +    +     ++++  R G  D+   +
Sbjct: 365 NEITLSNVLSACAVLGAKRQGKA-VHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGV 423

Query: 495 LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554
              +  K   + W++L+ A   HG    G    +H  EL  E   A              
Sbjct: 424 FAAIRDKSLVS-WSTLIAAYAQHGHSRTG---LEHFWELLQEGLAA-------------- 465

Query: 555 DDVATIRTRLNDKGMKKVPGCSS---IEVGSVVHEFLVGDK-VHPQSKHIYEMLDEIDAL 610
           DDV  + T         +  CS    ++ G      +VGD  + P  +H   M+D    L
Sbjct: 466 DDVTMVST---------LSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVD----L 512

Query: 611 LEKSGFVPDTSEVLYDM 627
           L ++G +     +++DM
Sbjct: 513 LSRAGRLEAAENLIHDM 529



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 213/437 (48%), Gaps = 46/437 (10%)

Query: 174 MYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
           MY + G +  A  VF+     ++VS+T ++  +A  G+  +A   +  M +  E   P+ 
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVL--EGLRPDG 58

Query: 234 STVVTVLSACAHMGSLELGNWVCSLI-EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFE 292
           +  V  +  C+    L+ G  + ++I E   L  ++ +  ALI MY++C DL  AR  F+
Sbjct: 59  AMFVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFD 118

Query: 293 SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE---PNDVTFLSVLPACAYLGA 349
            + K+ +++WN +I GY+   D++ AL +++ M+  + E   P+ +TF S L AC  +G 
Sbjct: 119 EMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGD 178

Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
           +  G+ I A    +    +++ +  +LI+MY+KCG++++A +VFD +  + + +WN MIS
Sbjct: 179 ISQGREIEARTVASGYASDSI-VQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMIS 237

Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD---- 465
           G A  G A +AL LF RM     +P+ +TF+G+L+AC +   L+ GR     + +D    
Sbjct: 238 GYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYES 297

Query: 466 ------------YKISPKLQH---------------YGCMVDLLGRAGLFDEAEALLKTM 498
                        K S  L+                +  ++    + G   +A  + K M
Sbjct: 298 DLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQM 357

Query: 499 EMK---PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVL---LSNMYAGAG 552
           +++   P+    +++L AC V G    G++V  H L          VL   L NMY   G
Sbjct: 358 QLENVAPNEITLSNVLSACAVLGAKRQGKAV--HALIASGRCKADVVLENSLMNMYNRCG 415

Query: 553 RWDDVATIRTRLNDKGM 569
             DD   +   + DK +
Sbjct: 416 SLDDTVGVFAAIRDKSL 432


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  526 bits (1356), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 275/714 (38%), Positives = 421/714 (58%), Gaps = 46/714 (6%)

Query: 33  SLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           S AL S  T  Q + ++HS II  GLH++    +KLI     + F D + +  VF     
Sbjct: 20  SRALASAATTTQ-LHKLHSLIITLGLHHSVIFSAKLI--AKYAHFRDPTSSFSVFRLASP 76

Query: 93  PNQV-IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
            N V +WN+IIR  + +     A+  Y         P+TYTFP ++ +CA +      K 
Sbjct: 77  SNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKS 136

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IH  VL +G  SD ++  +LI+MY +  +L+ AR VF +  LRD VS+ +LI+GY + GY
Sbjct: 137 IHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGY 196

Query: 212 LDDARQ-------LFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
            ++A +       LF EM      F P+  T+ ++L AC H+G LE G +V   +   G 
Sbjct: 197 WNEALEIYYQSIKLFMEMV---NQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGY 253

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLF-------------------------------ES 293
             +   +N LI+MY+KCG+L+ ++++F                               E+
Sbjct: 254 ECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFEN 313

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
           ++ RD+I+WN +I    H+ D    L +  +M    + P+  T LS+LP C+ L A   G
Sbjct: 314 MKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQG 373

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAM 413
           K IH  I K   + ++V +   LI+MY+KCG+++ + QVF  M  K + +W A+IS   M
Sbjct: 374 KEIHGCIFKLGLE-SDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGM 432

Query: 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQ 473
           +G+  KA+  F  M   G+ PD + FV ++ AC+H+GL++ G  YF+ M +DYKI P+++
Sbjct: 433 YGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIE 492

Query: 474 HYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL 533
           HY C+VDLL R+ L D+AE  + +M +KPD++IW +LL ACR+ G  E+ E V++ ++EL
Sbjct: 493 HYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIEL 552

Query: 534 EPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKV 593
            P++ G YVL+SN+YA  G+WD V +IR  +  +G+KK PGCS +E+ + V+ F  G K 
Sbjct: 553 NPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKF 612

Query: 594 HPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTK 653
             Q + + ++L  +  L+ K G++ +   VL+D+DE+ K   L  HSE+LAIA+GL++TK
Sbjct: 613 FEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTK 672

Query: 654 PGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           PGT ++++KNLRVC +CH+ TK ISKI  RE++ RD NRFH FKDG CSC DYW
Sbjct: 673 PGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 726



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 122/440 (27%), Positives = 211/440 (47%), Gaps = 46/440 (10%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           F  I ++ A  +  ++  ++H+ ++ LGL         LI  YA   +  S+  VF  +S
Sbjct: 16  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLAS 75

Query: 193 LRDAVS-YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL 251
             + V  + ++I      G   +A  L+ E   +     P+  T  +V++ACA +   E+
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSE--TQRIRLQPDTYTFPSVINACAGLLDFEM 133

Query: 252 GNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311
              +   +   G GS+L++ NALIDMY +  DL KAR +FE +  RDV+SWN +I GY  
Sbjct: 134 AKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNA 193

Query: 312 TSDYKEALMLFRQMLQ------SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365
              + EAL ++ Q ++      +  +P+ +T  S+L AC +LG L+ GK++H Y+  +  
Sbjct: 194 NGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGY 253

Query: 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF- 424
           + +  +    LI+MYAKCGN+ A+++VF GM  K   SWN+MI+    +GK   +L +F 
Sbjct: 254 ECDTTAS-NILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFE 312

Query: 425 ------------------------------SRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
                                         SRM  EG+ PD  T + +L  C+       
Sbjct: 313 NMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQ 372

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
           G++  +  I    +   +     ++++  + G    +  + K M+ K D   WT+L+ AC
Sbjct: 373 GKE-IHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTALISAC 430

Query: 515 RVHGRLELGESVAKHLLELE 534
            ++G    G+   +   E+E
Sbjct: 431 GMYGE---GKKAVRAFGEME 447


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 280/611 (45%), Positives = 379/611 (62%), Gaps = 44/611 (7%)

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN--GELESARLVFNKSS 192
           F L+SC  ++ I   KQ HAH++  GL   P     L+ +   +  G L  A  +F++  
Sbjct: 20  FSLESCKSMNQI---KQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIP 76

Query: 193 LRDAVSYTALITGYAS-RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH-MGSLE 250
             D   Y  +I  +A       ++ ++F  M +R   F+PN  T V V  AC + +G LE
Sbjct: 77  KPDVFIYNTMIKAHAVIPTSSHNSMRIFLSM-VRVSGFLPNRYTFVFVFKACGNGLGVLE 135

Query: 251 LGNWVCSLIEGHGLGSNLHVTNALIDMYSK------------------------------ 280
            G  +       GL SNL VTNA+I MY+                               
Sbjct: 136 -GEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYV 194

Query: 281 -CGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS 339
             G++ +A+++F+ + +RDV+SW  +I GY     +KEAL LF +MLQ+   PN+ T  S
Sbjct: 195 GSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLAS 254

Query: 340 VLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF-DGMGY 398
            L ACA L ALD G+WIH YIDK+  K+N   L  SL+DMYAKCG I  A +VF D  G 
Sbjct: 255 ALAACANLVALDQGRWIHVYIDKSEIKMNE-RLLASLLDMYAKCGEIDFAAKVFHDEYGL 313

Query: 399 K-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
           K  +  WNAMI G AMHGK+ +A+ LF +M  E + P+ +TFV +L+AC+H  L++ GR 
Sbjct: 314 KLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRG 373

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
           YF +M   Y I P+++HYGCMVDLLGR+GL  EAE  +  M M PDA IW +LLGACR+H
Sbjct: 374 YFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIH 433

Query: 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577
             +E G+ + K + EL+ ++ G +VLL+N+Y+ +G+WD+   +R ++   G KK PGCSS
Sbjct: 434 KDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSS 493

Query: 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM-DEEWKEGAL 636
           IE+  V H+FLVGD+ HPQ+K +Y  LDE+   L+ +G+VP+  EVL D+ DEE KE AL
Sbjct: 494 IELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETAL 553

Query: 637 SHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHF 696
           S HSEKLAIA+GLI+T PGT IRIVKNLRVC +CH ATK ISK++ REII RDR R+HHF
Sbjct: 554 SKHSEKLAIAFGLINTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHF 613

Query: 697 KDGNCSCNDYW 707
           KDG CSC DYW
Sbjct: 614 KDGFCSCKDYW 624



 Score =  228 bits (582), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 136/425 (32%), Positives = 226/425 (53%), Gaps = 34/425 (8%)

Query: 30  NQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFET 89
           NQ  L  L  C +M  IKQ H+ +I TGL       +KL+++   S FG LSYA  +F+ 
Sbjct: 15  NQLQLFSLESCKSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQ 74

Query: 90  IREPNQVIWNNIIRGHS-LSSSPVVAIKFYVRMI-LSGFVPNTYTFPFILKSCAKISAIS 147
           I +P+  I+N +I+ H+ + +S   +++ ++ M+ +SGF+PN YTF F+ K+C     + 
Sbjct: 75  IPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVL 134

Query: 148 EGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA 207
           EG+QI  H +K+GLES+ FV  ++I MYA  G ++ AR VF+ S  +D  S+  +I GY 
Sbjct: 135 EGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYV 194

Query: 208 SRGYLDDARQLFDEMPIRE--------ENFV---------------------PNESTVVT 238
             G +  A+++FDEM  R+          +V                     PNE T+ +
Sbjct: 195 GSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLAS 254

Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLF--ESIEK 296
            L+ACA++ +L+ G W+   I+   +  N  +  +L+DMY+KCG++  A  +F  E   K
Sbjct: 255 ALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLK 314

Query: 297 RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
             V  WN MIGGY      KEA+ LF QM    + PN VTF+++L AC++   ++ G+  
Sbjct: 315 LKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGY 374

Query: 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHG 415
              +  ++     +  +  ++D+  + G +K AE+    M     A+ W A++    +H 
Sbjct: 375 FKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHK 434

Query: 416 KADKA 420
             ++ 
Sbjct: 435 DIERG 439


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 283/715 (39%), Positives = 426/715 (59%), Gaps = 33/715 (4%)

Query: 17  FPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICA-VS 75
           F PSS   + L+    + + L K   +   KQ+H    + G H   F+ + L+ + A + 
Sbjct: 109 FEPSS---FTLVSMALACSNLRKRDGLWLGKQIHGCCFRKG-HWRTFSNNALMAMYAKLG 164

Query: 76  PFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPF 135
              D    L++FE   + + V WN++I   S +   + A+ F   M+L G  P+  TF  
Sbjct: 165 RLDDAKSLLVLFE---DRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFAS 221

Query: 136 ILKSCAKISAISEGKQIHAHVLKLG-LESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
           +L +C+ +  +  GK+IHA+ L+   +  + FV ++L++MY   G++ES RLVF+    R
Sbjct: 222 VLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDR 281

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
               + A+I GYA   + + A  LF EM         N +T+ +++ A      +     
Sbjct: 282 KIGLWNAMIAGYAQSEHDEKALMLFIEMEA-AAGLYSNATTMSSIVPAYVRCEGISRKEG 340

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           +   +   GL +N ++ NALIDMYS+ GD+  ++ +F+S+E RD++SWN +I  Y     
Sbjct: 341 IHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGR 400

Query: 315 YKEALMLFRQML----------------QSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
             +AL+L  +M                 Q   +PN +T ++VLP CA L AL  GK IHA
Sbjct: 401 SSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHA 460

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKAD 418
           Y  +N    + V++ ++L+DMYAKCG +  A +VFD M  + + +WN +I    MHGK  
Sbjct: 461 YAIRNLLA-SQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGK 519

Query: 419 KALSLFSRMIGEG-----LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQ 473
           ++L LF  M+ EG     ++P ++TF+ + ++C+H+G++D G   F+ M  ++ I P   
Sbjct: 520 ESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPD 579

Query: 474 HYGCMVDLLGRAGLFDEAEALLKTMEMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLE 532
           HY C+VDL+GRAG  +EA  L+ TM    D    W+SLLGACR++  +E+GE  A++LL+
Sbjct: 580 HYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQ 639

Query: 533 LEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDK 592
           L+P+    YVLLSN+Y+ AG WD    +R R+   G+KK PGCS IE G  VH+FL GD 
Sbjct: 640 LQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVHKFLAGDL 699

Query: 593 VHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLIST 652
            HPQS+ +++ L+ +   L+K G+VPDT+ VL+D+DEE KE  L  HSEKLAIA+G+++T
Sbjct: 700 SHPQSEKLHDFLETLSERLKKEGYVPDTACVLHDIDEEEKETILCGHSEKLAIAFGILNT 759

Query: 653 KPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            PGTTIR+ KNLRVC +CH+A+K ISKI +REII RD  RFHHFKDG CSC DYW
Sbjct: 760 PPGTTIRVAKNLRVCNDCHTASKFISKIEDREIILRDARRFHHFKDGTCSCGDYW 814



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 136/411 (33%), Positives = 212/411 (51%), Gaps = 23/411 (5%)

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE--SDPFVHTSLINMYAQN 178
           MI SGF P+ + FP +LK+ A I  +  GKQIHAHV K G    S   +  +L+NMY + 
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 179 GELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVT 238
           G L  A  VF++ + RD VS+ ++I+        + A + F  M +  E F P+  T+V+
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLM--EGFEPSSFTLVS 118

Query: 239 VLSACAHM---GSLELGNWV--CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
           +  AC+++     L LG  +  C   +GH         NAL+ MY+K G L  A+ L   
Sbjct: 119 MALACSNLRKRDGLWLGKQIHGCCFRKGHW---RTFSNNALMAMYAKLGRLDDAKSLLVL 175

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
            E RD+++WN MI  ++    + EALM  R M+   ++P+ VTF SVLPAC++L  L  G
Sbjct: 176 FEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTG 235

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAM 413
           K IHAY  +    + N  + ++L+DMY  CG +++   VFD +  + +  WNAMI+G A 
Sbjct: 236 KEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQ 295

Query: 414 HGKADKALSLFSRM-IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL 472
               +KAL LF  M    GL  +  T   ++ A  +     I R+     I  Y I   L
Sbjct: 296 SEHDEKALMLFIEMEAAAGLYSNATTMSSIVPA--YVRCEGISRK---EGIHGYVIKRGL 350

Query: 473 QH----YGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
           +        ++D+  R G    ++ +  +ME + D   W +++ +  + GR
Sbjct: 351 ETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDR-DIVSWNTIITSYVICGR 400



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 142/520 (27%), Positives = 246/520 (47%), Gaps = 34/520 (6%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           A+L     +Q +   KQ+H+ + K G  +          +      G L  A  VF+ I 
Sbjct: 15  AVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVFDRIT 74

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCA---KISAISE 148
           E +QV WN+II          VAIK +  M++ GF P+++T   +  +C+   K   +  
Sbjct: 75  ERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGLWL 134

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           GKQIH    + G     F + +L+ MYA+ G L+ A+ +      RD V++ ++I+ ++ 
Sbjct: 135 GKQIHGCCFRKG-HWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQ 193

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL-IEGHGLGSN 267
                +A      M +  E   P+  T  +VL AC+H+  L  G  + +  +    +  N
Sbjct: 194 NERFMEALMFLRLMVL--EGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIEN 251

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM-L 326
             V +AL+DMY  CG +   R +F+S+  R +  WN MI GY  +   ++ALMLF +M  
Sbjct: 252 SFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEA 311

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
            + +  N  T  S++PA      +   + IH Y+ K   + N   L  +LIDMY++ G+I
Sbjct: 312 AAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRY-LQNALIDMYSRMGDI 370

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM--IGEG------------- 431
           K ++++FD M  + + SWN +I+   + G++  AL L   M  I E              
Sbjct: 371 KTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQV 430

Query: 432 -LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
             +P+ IT + VL  C     L  G++     I++  ++ ++     +VD+  + G  + 
Sbjct: 431 PFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNL-LASQVTVGSALVDMYAKCGCLNL 489

Query: 491 AEALLKTMEMKPDAAIWTSLLGACRVHGR----LELGESV 526
           A  +   M ++ +   W  ++ A  +HG+    LEL E +
Sbjct: 490 ARRVFDQMPIR-NVITWNVIIMAYGMHGKGKESLELFEDM 528


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 265/674 (39%), Positives = 415/674 (61%), Gaps = 6/674 (0%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L L  +  +++  +++H  +I  G  +  FA++ ++ + A     + +Y +  FE + + 
Sbjct: 149 LQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKM--FERMPQR 206

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           + V WN ++ G++ +     A++  ++M  +G  P++ T   +L + A + A+  G+ IH
Sbjct: 207 DLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIH 266

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
            +  + G E    V T++++ Y + G + SARLVF   S R+ VS+  +I GYA  G  +
Sbjct: 267 GYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESE 326

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           +A   F  + + +E   P   +++  L ACA++G LE G +V  L++   +G ++ V N+
Sbjct: 327 EAFATF--LKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNS 384

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           LI MYSKC  +  A  +F +++ + V++WN MI GY       EAL LF +M   +I+P+
Sbjct: 385 LISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPD 444

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
             T +SV+ A A L      KWIH    +      NV + T+LID +AKCG I+ A ++F
Sbjct: 445 SFTLVSVITALADLSVTRQAKWIHGLAIRTLMD-KNVFVCTALIDTHAKCGAIQTARKLF 503

Query: 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLD 453
           D M  + + +WNAMI G   +G   +AL LF+ M    ++P++ITF+ V++AC+H+GL++
Sbjct: 504 DLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVE 563

Query: 454 IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
            G  YF +M ++Y + P + HYG MVDLLGRAG  D+A   ++ M +KP   +  ++LGA
Sbjct: 564 EGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGA 623

Query: 514 CRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVP 573
           CR+H  +ELGE  A  L +L+P++ G +VLL+NMYA A  WD VA +RT +  KG++K P
Sbjct: 624 CRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTP 683

Query: 574 GCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKE 633
           GCS +E+ + VH F  G   HPQSK IY  L+ +   ++ +G+VPDT+ + +D++E+ KE
Sbjct: 684 GCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEMKAAGYVPDTNSI-HDVEEDVKE 742

Query: 634 GALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRF 693
             LS HSE+LAIA+GL++T+ GT I I KNLRVCG+CH ATK IS +  REII RD  RF
Sbjct: 743 QLLSSHSERLAIAFGLLNTRHGTAIHIRKNLRVCGDCHEATKYISLVTGREIIVRDLRRF 802

Query: 694 HHFKDGNCSCNDYW 707
           HHFK+G CSC DYW
Sbjct: 803 HHFKNGICSCGDYW 816



 Score =  272 bits (696), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 173/569 (30%), Positives = 290/569 (50%), Gaps = 56/569 (9%)

Query: 31  QPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
            PS  LL  CT+++ + Q+   IIK G +N     +KLI +     F  ++ A  VFE +
Sbjct: 45  HPSAILLELCTSLKELHQILPLIIKNGFYNEHLFQTKLISL--FCKFNSITEAARVFEPV 102

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
                V+++ +++G++ +S+   A++FY RM     +P  Y F ++L+   +   +  G+
Sbjct: 103 EHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGR 162

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           +IH  V+  G +S+ F  T+++N+YA+  ++E A  +F +   RD VS+  ++ GYA  G
Sbjct: 163 EIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNG 222

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
           +   A Q+  +M  +E    P+  T+V+VL A A + +L +G  +       G    ++V
Sbjct: 223 FARRAVQVVLQM--QEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNV 280

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
             A++D Y KCG +  AR +F+ +  R+V+SWN MI GY    + +EA   F +ML   +
Sbjct: 281 ATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGV 340

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           EP +V+ +  L ACA LG L+ G+++H  +D+      +VS+  SLI MY+KC  +  A 
Sbjct: 341 EPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGF-DVSVMNSLISMYSKCKRVDIAA 399

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC---- 446
            VF  + +KT+ +WNAMI G A +G  ++AL+LF  M    ++PD  T V V++A     
Sbjct: 400 SVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLS 459

Query: 447 -----------------------------NHA--GLLDIGRQYFNAMIQDYKISPKLQHY 475
                                         HA  G +   R+ F+ M + + I+     +
Sbjct: 460 VTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVIT-----W 514

Query: 476 GCMVDLLGRAGLFDEAEALLKTME---MKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
             M+D  G  G   EA  L   M+   +KP+   + S++ AC   G +E G    + + E
Sbjct: 515 NAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKE 574

Query: 533 ---LEP--ENPGAYVLLSNMYAGAGRWDD 556
              LEP  ++ GA V   ++   AGR DD
Sbjct: 575 NYGLEPTMDHYGAMV---DLLGRAGRLDD 600


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 282/722 (39%), Positives = 410/722 (56%), Gaps = 65/722 (9%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP---NQVIWNNIIR 103
           + +H  I   G  +  F  + L+ +   S  G L  A LVF+ I      + + WN+I+ 
Sbjct: 169 RALHGLICCNGFESNVFVCNALVAM--YSRCGSLEDASLVFDEITRKGIDDVISWNSIVA 226

Query: 104 GHSLSSSPVVAIKFYVRMIL------SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
            H   S+P  A++ +  M +      +    +  +   IL +CA + A+ + K+IH++ +
Sbjct: 227 AHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAI 286

Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ 217
           + G  +D FV  +LI+ YA+ G +  A  VFN    +D VS+ A++TGY   G    A +
Sbjct: 287 RNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFE 346

Query: 218 LFDEMPIREENFV-----------------------------------PNESTVVTVLSA 242
           LF+ M  R+EN                                     PN  T++++LSA
Sbjct: 347 LFENM--RKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSA 404

Query: 243 CAHMGSLELGNWVCSLIEGHGLGS------------NLHVTNALIDMYSKCGDLVKARDL 290
           CA +G+L  G  + +      L S            +L V NALIDMYSKC     AR +
Sbjct: 405 CASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSI 464

Query: 291 FESIEKRD--VISWNVMIGGYTHTSDYKEALMLFRQMLQS--NIEPNDVTFLSVLPACAY 346
           F+SI +R+  V++W VMIGGY    D  +AL +F +M+     + PN  T   +L ACA+
Sbjct: 465 FDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAH 524

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTS-LIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
           L AL +GK IHAY+ ++H+   +V    + LIDMY+KCG++  A  VFD M  +   SW 
Sbjct: 525 LAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWT 584

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
           +M+SG  MHG+  +AL +F +M   G  PDDI+F+ +L AC+H+G++D G  YF+ M +D
Sbjct: 585 SMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRD 644

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
           Y +    +HY C++DLL R G  D+A   ++ M M+P A IW +LL ACRVH  +EL E 
Sbjct: 645 YDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEY 704

Query: 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVH 585
               L+ ++ EN G+Y L+SN+YA A RW DVA IR  +   G+KK PGCS ++      
Sbjct: 705 ALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTA 764

Query: 586 EFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAI 645
            F VGD+ HP S  IY +L+ +   ++  G+VP+T+  L+D+D+E K   LS HSEKLA+
Sbjct: 765 SFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLSEHSEKLAL 824

Query: 646 AYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCND 705
           AYGL++T PG  IRI KNLRVCG+CHSA   ISKI + EII RD +RFHHFK+G+CSC  
Sbjct: 825 AYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIIVRDSSRFHHFKNGSCSCGG 884

Query: 706 YW 707
           YW
Sbjct: 885 YW 886



 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 163/561 (29%), Positives = 265/561 (47%), Gaps = 77/561 (13%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQ-----FALSKLIEICAVSP------------- 76
           +LL +C ++  ++Q+H +II  GL +         L+ L     VSP             
Sbjct: 36  SLLKECRSVNTVRQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVSPKSLGTGVVASYLA 95

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
            G    AL V E +     V WN ++R H        AI    RM+ +G  P+ +T P+ 
Sbjct: 96  CGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTLPYA 155

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN---KSSL 193
           LK+C ++ +   G+ +H  +   G ES+ FV  +L+ MY++ G LE A LVF+   +  +
Sbjct: 156 LKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGI 215

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNES----TVVTVLSACAHMGSL 249
            D +S+ +++  +        A +LF EM +       NE     ++V +L ACA + +L
Sbjct: 216 DDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKAL 275

Query: 250 ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309
                + S    +G  ++  V NALID Y+KCG +  A  +F  +E +DV+SWN M+ GY
Sbjct: 276 PQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGY 335

Query: 310 THTSDYKEALMLFRQMLQSNI-----------------------------------EPND 334
           T + ++  A  LF  M + NI                                   EPN 
Sbjct: 336 TQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNS 395

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKN-----------HQKLNNVSLWTSLIDMYAKC 383
           VT +S+L ACA LGAL  G  IHAY  K                 ++ ++ +LIDMY+KC
Sbjct: 396 VTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKC 455

Query: 384 GNIKAAEQVFDGMGY--KTLASWNAMISGLAMHGKADKALSLFSRMIGE--GLQPDDITF 439
            + KAA  +FD +    + + +W  MI G A +G ++ AL +FS MI +   + P+  T 
Sbjct: 456 RSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTI 515

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG-CMVDLLGRAGLFDEAEALLKTM 498
             +L AC H   L +G+Q    + + ++  P +     C++D+  + G  D A  +  +M
Sbjct: 516 SCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSM 575

Query: 499 EMKPDAAIWTSLLGACRVHGR 519
             + + + WTS++    +HGR
Sbjct: 576 PKRNEVS-WTSMMSGYGMHGR 595


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 287/673 (42%), Positives = 408/673 (60%), Gaps = 39/673 (5%)

Query: 36   LLSKCTNMQNIKQVHSQI-IKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
            +L K  +++ +K++HS+I I   LH+      KL+   AV   G+      +F+ I + N
Sbjct: 1033 ILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVC--GEPWSTRHIFDEIPKKN 1090

Query: 95   QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
             V +N +IR +  +     A+  +  M   G  P+ YT+P +LK+ +    +  G QIHA
Sbjct: 1091 VVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHA 1150

Query: 155  HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
             V+++GL+ + FV   LI+MY + G L  A  V ++   RD VS+ +L+ G A  G  DD
Sbjct: 1151 AVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDD 1210

Query: 215  ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274
            A ++  EM +      P+  T+ ++L A                           VTN  
Sbjct: 1211 ALEVCKEMELL--GLKPDAGTMASLLPA---------------------------VTNTC 1241

Query: 275  IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
            +D  S        +++F  +  + ++SWNVMI  Y + S   EA+ +F QM    ++P+ 
Sbjct: 1242 LDNVSF------VKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDA 1295

Query: 335  VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
            ++  SVLPAC  L AL LG+ IH Y+ +   +  N+ L  +LIDMYAKCG ++ A +VFD
Sbjct: 1296 ISIASVLPACGDLSALLLGRRIHEYVVRKRLQ-PNLLLENALIDMYAKCGCLEYAREVFD 1354

Query: 395  GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
             M ++ + SW +MIS   M+GK   A+SLFSRM   GL PD I FV VLSAC+HAGLLD 
Sbjct: 1355 QMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDE 1414

Query: 455  GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
            GR YF  M ++ KI P+++H+ CMVDLLGRAG  DEA   +K M M+P+  +W +LL AC
Sbjct: 1415 GRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSAC 1474

Query: 515  RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPG 574
            RV+  + +G   A  L +L PE  G YVLLSN+YA AGRW+DV T+R+ +  KG+KK+PG
Sbjct: 1475 RVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPG 1534

Query: 575  CSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEG 634
             S+ E+ + VH FL GD+ HPQSK IYE LD +   ++++G+VP+T   L+D++EE KE 
Sbjct: 1535 VSNFELDNRVHTFLAGDQSHPQSKQIYEELDVLVGKMKEAGYVPETDSALHDVEEEDKEC 1594

Query: 635  ALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFH 694
             L+ HSEKLAIA+ +++T PG+ IRI KNLRVCG+CH A KLISKI  REI  RD NRFH
Sbjct: 1595 HLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFH 1654

Query: 695  HFKDGNCSCNDYW 707
            HF +G CSC DYW
Sbjct: 1655 HFYNGVCSCGDYW 1667


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 267/617 (43%), Positives = 389/617 (63%), Gaps = 8/617 (1%)

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
           WN++I   + S     A++ +  M      P   +FP  +K+C+ +  I  GKQ H    
Sbjct: 44  WNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSGKQTHQQAF 103

Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ 217
             G +SD FV ++LI MY+  G+LE AR VF++   R+ VS+T++I GY   G   DA  
Sbjct: 104 VFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVS 163

Query: 218 LFDEMPIREEN----FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           LF ++ I E +       +   +V+V+SAC+ + +  L   + S +   G    + V N 
Sbjct: 164 LFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNT 223

Query: 274 LIDMYSKCGD--LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           L+D Y+K G+  +  AR +F+ I  +D +S+N ++  Y  +    EA  +FR++++  + 
Sbjct: 224 LLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVV 283

Query: 332 P-NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
             N +T  +VL A ++ GAL +GK IH  + +   + ++V + TS+IDMY KCG ++ A 
Sbjct: 284 TFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLE-DDVIVGTSIIDMYCKCGRVETAR 342

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
             FD M  K + SW AMI+G  MHG A KAL LF  MI  G++P+ ITFV VL+AC+HAG
Sbjct: 343 LAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAG 402

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L D+G  +FNAM   + + P L+HYGCMVDLLGRAG   +A  L++ M+M+PD+ IW+SL
Sbjct: 403 LHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSL 462

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           L ACR+H  +EL E     L EL+P N G Y+LLS++YA +GRW DV  +R  + ++G+ 
Sbjct: 463 LAACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADSGRWKDVERVRMTMKNRGLV 522

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           K PG S +E+   VH FL+GD+ HPQ + IYE L E++  L ++G+V +TS V +D+DEE
Sbjct: 523 KPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEE 582

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KE  L  HSEKLAIA+G+++T PG+T+ +VKNLRVC +CH+  KLISKI +RE + RD 
Sbjct: 583 EKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDA 642

Query: 691 NRFHHFKDGNCSCNDYW 707
            RFHHFKDG CSC DYW
Sbjct: 643 KRFHHFKDGFCSCGDYW 659



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 218/421 (51%), Gaps = 19/421 (4%)

Query: 37  LSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           +  C+++ +I   KQ H Q    G  +  F  S LI +   S  G L  A  VF+ I + 
Sbjct: 83  IKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVM--YSTCGKLEDARKVFDEIPKR 140

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMIL------SGFVPNTYTFPFILKSCAKISAIS 147
           N V W ++IRG+ L+ + + A+  +  +++      +    ++     ++ +C++++A  
Sbjct: 141 NIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKG 200

Query: 148 EGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE--LESARLVFNKSSLRDAVSYTALITG 205
             + IH+ V+K G +    V  +L++ YA+ GE  +  AR +F++   +D VSY ++++ 
Sbjct: 201 LTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSV 260

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           YA  G  ++A  +F  + I+E+    N  T+ TVL A +H G+L +G  +   +   GL 
Sbjct: 261 YAQSGMSNEAFDVFRRL-IKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLE 319

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
            ++ V  ++IDMY KCG +  AR  F+ ++ ++V SW  MI GY       +AL LF  M
Sbjct: 320 DDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAM 379

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLG-KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           + S + PN +TF+SVL AC++ G  D+G  W +A   +   +   +  +  ++D+  + G
Sbjct: 380 IDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVE-PGLEHYGCMVDLLGRAG 438

Query: 385 NIKAAEQVFDGMGYKTLA-SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
            ++ A  +   M  +  +  W+++++   +H   + A    +R+    L P +  +  +L
Sbjct: 439 FLQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLF--ELDPSNCGYYMLL 496

Query: 444 S 444
           S
Sbjct: 497 S 497



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 146/329 (44%), Gaps = 62/329 (18%)

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
           ++K DV SWN +I     + D  EAL  F  M + ++ P   +F   + AC+ L  +  G
Sbjct: 36  VDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSG 95

Query: 354 KWIH--AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGL 411
           K  H  A++   +Q  +++ + ++LI MY+ CG ++ A +VFD +  + + SW +MI G 
Sbjct: 96  KQTHQQAFV-FGYQ--SDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGY 152

Query: 412 AMHGKADKALSLFSRMIGEGLQPDDITF------VGVLSACNHAG--------------- 450
            ++G A  A+SLF  ++ E    D   F      V V+SAC+                  
Sbjct: 153 DLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKR 212

Query: 451 -----------LLD-----------IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL- 487
                      LLD           + R+ F+ ++   ++S     Y  ++ +  ++G+ 
Sbjct: 213 GFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVS-----YNSIMSVYAQSGMS 267

Query: 488 ---FDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP---GAY 541
              FD    L+K   +  +    +++L A    G L +G+ +   ++ +  E+    G  
Sbjct: 268 NEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTS 327

Query: 542 VLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           ++  +MY   GR +       R+ +K ++
Sbjct: 328 II--DMYCKCGRVETARLAFDRMKNKNVR 354


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 271/706 (38%), Positives = 419/706 (59%), Gaps = 39/706 (5%)

Query: 36  LLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LLS C+ +       QVH  ++K GL    F  + LI   A    G +     VF+ + E
Sbjct: 128 LLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAAC--GKVDLGRKVFDEMLE 185

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            N V W ++I G+S+ +    A+  +  M+  G  PN  T    + +CAK+  +  GK++
Sbjct: 186 RNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKV 245

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
              + +LG++S+  V  +L++MY + G++ + R +F++ S ++ V Y  +++ Y   G  
Sbjct: 246 CNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLA 305

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
            +   + DEM  + +   P++ T+++ ++ACA +G L +G    + +  +GL    +++N
Sbjct: 306 GEVLVVLDEMLQKGQR--PDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISN 363

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVI-------------------------------S 301
           A+IDMY KCG    A  +F+S+  + V+                               S
Sbjct: 364 AIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVS 423

Query: 302 WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361
           WN MIG     S ++EA+ L R+M    I+ + VT + +  AC YLGALDL KWI+ YI+
Sbjct: 424 WNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIE 483

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421
           KN   ++ + L T+L+DM+++CG+   A +VF+ M  + +++W A I   A+ G A  A+
Sbjct: 484 KNDIHID-MQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAI 542

Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481
            LF  M+ + ++ DD  FV +L+A +H G +D GRQ F AM + + +SP++ HYGCMVDL
Sbjct: 543 ELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDL 602

Query: 482 LGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541
           LGRAGL +EA  L+K+M +KP+  IW S L ACR H  +E      + + +L PE  G +
Sbjct: 603 LGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLAPEKVGIH 662

Query: 542 VLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIY 601
           VLLSN+YA AG+W+DVA +R ++ +KG +KV G SSIEV  ++ EF  GD+ H ++  I 
Sbjct: 663 VLLSNIYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESHTENAQIG 722

Query: 602 EMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIV 661
            ML EI+  + + G+VPDT+ VL D+DE+ KE  LS HSEKLA+AYGLI+T  G  IR+V
Sbjct: 723 LMLQEINCRISQVGYVPDTTNVLVDVDEQEKEHLLSRHSEKLAMAYGLINTGKGIPIRVV 782

Query: 662 KNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           KNLR+C +CHS  KL+SK++ REI  RD NR+H FK+G CSC D+W
Sbjct: 783 KNLRMCSDCHSFAKLVSKLYGREITVRDNNRYHFFKEGFCSCRDFW 828



 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 200/572 (34%), Positives = 305/572 (53%), Gaps = 61/572 (10%)

Query: 1   MALPPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHN 60
           MA   ++L  S S L  P ++  P    +N      L  C  +  +KQ+H  ++K G+ N
Sbjct: 1   MATTTTTLHQSSSPLLLPTTTQKP----KNSS----LQTCKTLIELKQLHCNMLKKGVFN 52

Query: 61  TQFALSKLIEICA-VSPFGDLSYALLVFETIREPNQVIW--NNIIRGHSLSSSPVVAIKF 117
               ++KLI  C  +     L+YAL  F+        ++  N +IRG++ S     AI  
Sbjct: 53  ----INKLIAACVQMGTHESLNYALNAFKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFI 108

Query: 118 YVRMILS-GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYA 176
           Y+ MI+  G VP+ +TFPF+L +C+KI A SEG Q+H  V+K+GL  D FV  SLI+ YA
Sbjct: 109 YLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYA 168

Query: 177 QNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTV 236
             G+++  R VF++   R+ VS+T+LI GY+      +A  LF EM   E    PN  T+
Sbjct: 169 ACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMV--EVGVEPNPVTM 226

Query: 237 VTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK 296
           V  +SACA +  LELG  VC+L+   G+ SN  V NAL+DMY KCGD+   R++F+    
Sbjct: 227 VCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSD 286

Query: 297 RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
           ++++ +N ++  Y       E L++  +MLQ    P+ VT LS + ACA LG L +GK  
Sbjct: 287 KNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSS 346

Query: 357 HAYIDKNH-QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHG 415
           HAY+ +N  ++L+N+S   ++IDMY KCG  +AA +VFD M  KT+ +WN++I+GL   G
Sbjct: 347 HAYVFRNGLERLDNIS--NAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDG 404

Query: 416 KADKALSLFSR-----------MIG--------------------EGLQPDDITFVGVLS 444
           + + AL +F             MIG                    +G++ D +T VG+ S
Sbjct: 405 ELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIAS 464

Query: 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504
           AC + G LD+ + +    I+   I   +Q    +VD+  R G    A  + + ME K D 
Sbjct: 465 ACGYLGALDLAK-WIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENME-KRDV 522

Query: 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPE 536
           + WT+ +       R++  E  AK  +EL  E
Sbjct: 523 SAWTAAI-------RVKAVEGNAKGAIELFDE 547


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 287/673 (42%), Positives = 407/673 (60%), Gaps = 39/673 (5%)

Query: 36  LLSKCTNMQNIKQVHSQI-IKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           +L K  +++ +K++HS+I I   LH+      KL+   AV   G+      +F+ I + N
Sbjct: 44  ILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVC--GEPWSTRHIFDEIPKKN 101

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
            V +N +IR +  +     A+  +  M   G  P+ YT+P +LK+ +    +  G QIHA
Sbjct: 102 VVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHA 161

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
            V+++GL+ + FV   LI+MY + G L  A  V ++   RD VS+ +L+ G A  G  DD
Sbjct: 162 AVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDD 221

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274
           A ++  EM +      P+  T+ ++L A                           VTN  
Sbjct: 222 ALEVCKEMELL--GLKPDAGTMASLLPA---------------------------VTNTC 252

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
           +D  S        +++F  +  + ++SWNVMI  Y + S   EA+ +F QM    ++P+ 
Sbjct: 253 LDNVSF------VKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDA 306

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           ++  SVLPAC  L AL LG+ IH Y+ +   +  N+ L  +LIDMYAKCG ++ A +VFD
Sbjct: 307 ISIASVLPACGDLSALLLGRRIHEYVVRKRLQ-PNLLLENALIDMYAKCGCLEYAREVFD 365

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
            M ++ + SW +MIS   M+GK   A+SLFSRM   GL PD I FV VLSAC+HAGLLD 
Sbjct: 366 QMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDE 425

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
           GR YF  M ++ KI P+++H+ CMVDLLGRAG  DEA   +K M M+P+  +W +LL AC
Sbjct: 426 GRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSAC 485

Query: 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPG 574
           RV+  + +G   A  L +L PE  G YVLLSN+YA AGRW+DV T+R+ +  KG+KK+PG
Sbjct: 486 RVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPG 545

Query: 575 CSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEG 634
            S+ E+ + VH FL GD+ HPQSK IYE LD     ++++G+VP+T   L+D++EE KE 
Sbjct: 546 VSNFELDNRVHTFLAGDQSHPQSKQIYEELDVSVGKMKEAGYVPETDSALHDVEEEDKEC 605

Query: 635 ALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFH 694
            L+ HSEKLAIA+ +++T PG+ IRI KNLRVCG+CH A KLISKI  REI  RD NRFH
Sbjct: 606 HLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFH 665

Query: 695 HFKDGNCSCNDYW 707
           HF +G CSC DYW
Sbjct: 666 HFYNGVCSCGDYW 678


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 273/685 (39%), Positives = 396/685 (57%), Gaps = 76/685 (11%)

Query: 26  KLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALL 85
           K +   P+++LL+ CT ++ +KQ+H+Q++  G+ N      + +   A+    +L YA  
Sbjct: 5   KRIAKHPTISLLNSCTTLKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDYANK 64

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG---FVPNTYTFPFILKSCAK 142
           +      P     N++IR +S SS+P  +  FY  ++ S      P+ YTF F++++CA+
Sbjct: 65  LLNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQ 124

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
           + A   G  +H  V+K G E DP V T                                L
Sbjct: 125 LQAHVTGLCVHGAVIKHGFELDPHVQT-------------------------------GL 153

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
           +  YA  G L     +FD          P+  T   +L+ACA                  
Sbjct: 154 VFMYAELGCLSSCHNVFDGA------VEPDLVTQTAMLNACA------------------ 189

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
                            KCGD+  AR +F+ + +RD ++WN MI GY      +EAL +F
Sbjct: 190 -----------------KCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVF 232

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
             M    ++ N+V+ + VL AC +L  LD G+W+HAY+++   ++  V+L T+L+DMYAK
Sbjct: 233 HLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMT-VTLGTALVDMYAK 291

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
           CGN+  A QVF GM  + + +W++ I GLAM+G  +++L LF+ M  EG+QP+ ITF+ V
Sbjct: 292 CGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISV 351

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
           L  C+  GL++ GR++F++M   Y I P+L+HYG MVD+ GRAG   EA   + +M M+P
Sbjct: 352 LKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRP 411

Query: 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562
               W++LL ACR++   ELGE   + ++ELE +N GAYVLLSN+YA    W+ V+++R 
Sbjct: 412 HVGAWSALLHACRMYKNKELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESVSSLRQ 471

Query: 563 RLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSE 622
            +  KG+KK+PGCS IEV   VHEF+VGDK HP+   I   L+EI   L  SG+V +T+ 
Sbjct: 472 TMKAKGVKKLPGCSVIEVDGEVHEFIVGDKSHPRYDEIEMKLEEISKCLRLSGYVANTNP 531

Query: 623 VLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFN 682
           VL+D++EE KE ALS HSEK+AIA+GLIS K    IR+V NLR+C +CH+  K+ISKIFN
Sbjct: 532 VLFDIEEEEKEDALSKHSEKVAIAFGLISLKGVVPIRVVMNLRICWDCHNVAKMISKIFN 591

Query: 683 REIIARDRNRFHHFKDGNCSCNDYW 707
           REII RDRNRFHHFKDG CSC DYW
Sbjct: 592 REIIVRDRNRFHHFKDGECSCKDYW 616


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 278/675 (41%), Positives = 413/675 (61%), Gaps = 14/675 (2%)

Query: 37   LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQV 96
            ++  + ++ +K VH    + G  +     + LI + A    G +  A LVF+ + + + +
Sbjct: 433  IASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYA--KCGSIDDARLVFDGMCDRDVI 490

Query: 97   IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHV 156
             WN ++ G + +     A   +++M   G VP++ T+  +L +     A+    ++H H 
Sbjct: 491  SWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHA 550

Query: 157  LKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDAR 216
            ++ GL SD  V ++ I+MY + G ++ ARL+F+K S+R   ++ A+I G A +    +A 
Sbjct: 551  VETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREAL 610

Query: 217  QLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALID 276
             LF +M  + E F+P+ +T + +LSA     +LE    V S     GL  +L V NAL+ 
Sbjct: 611  SLFLQM--QREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGL-VDLRVGNALVH 667

Query: 277  MYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVT 336
             YSKCG++  A+ +F+ + +R+V +W +MIGG        +A   F QML+  I P+  T
Sbjct: 668  TYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATT 727

Query: 337  FLSVLPACAYLGALDLGKWIHAYIDKNHQK----LNNVSLWTSLIDMYAKCGNIKAAEQV 392
            ++S+L ACA  GAL+  K +H     NH      ++++ +  +L+ MYAKCG+I  A  V
Sbjct: 728  YVSILSACASTGALEWVKEVH-----NHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSV 782

Query: 393  FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
            FD M  + + SW  MI GLA HG+  +AL  F +M  EG +P+  ++V VL+AC+HAGL+
Sbjct: 783  FDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLV 842

Query: 453  DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
            D GR+ F +M QDY I P ++HY CMVDLLGRAGL +EAE  +  M ++PD A W +LLG
Sbjct: 843  DEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLG 902

Query: 513  ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
            AC  +G LE+ E  AK  L+L+P++   YVLLSN+YA  G+W+    +R+ +  KG++K 
Sbjct: 903  ACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKE 962

Query: 573  PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
            PG S IEV + +H F+VGD  HP+SK IY  L+++   L+  G+VPDT  VL + D+E K
Sbjct: 963  PGRSWIEVDNRIHSFVVGDTSHPESKEIYAQLNDLIERLKAKGYVPDTRLVLRNTDQEHK 1022

Query: 633  EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
            E AL  HSEKLAI YGL+ T+    IR+ KNLRVC +CH+ATK ISKI  REI+ARD  R
Sbjct: 1023 EQALCSHSEKLAIVYGLMHTQSKDPIRVYKNLRVCSDCHTATKFISKITGREIVARDAKR 1082

Query: 693  FHHFKDGNCSCNDYW 707
            FHHFKDG CSC DYW
Sbjct: 1083 FHHFKDGVCSCGDYW 1097



 Score =  269 bits (687), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 203/695 (29%), Positives = 332/695 (47%), Gaps = 68/695 (9%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +L +C   ++I   KQVH  IIK+G+    +  +KL+ +      G L  A  VF+ + +
Sbjct: 124 ILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRV--YIRCGRLQCARQVFDKLLK 181

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            N  IW  +I G++       A++ Y +M      PN  T+  ILK+C     +  GK+I
Sbjct: 182 KNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKI 241

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           HAH+++ G +SD  V T+L+NMY + G +E A+L+F+K   R+ +S+T +I G A  G  
Sbjct: 242 HAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRG 301

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
            +A  LF +M  + E F+PN  T V++L+A A  G+LE    V S     GL  +L V N
Sbjct: 302 QEAFHLFLQM--QREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGN 359

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           AL+ MY+K G +  AR +F+ + +RD+ SW VMIGG       +EA  LF QM ++   P
Sbjct: 360 ALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLP 419

Query: 333 NDVTFLSVL--PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           N  T+LS+L   A A   AL+  K +H + ++    ++++ +  +LI MYAKCG+I  A 
Sbjct: 420 NLTTYLSILNASAIASTSALEWVKVVHKHAEEA-GFISDLRIGNALIHMYAKCGSIDDAR 478

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
            VFDGM  + + SWNAM+ GLA +G   +A ++F +M  EGL PD  T++ +L+      
Sbjct: 479 LVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTD 538

Query: 451 LLDIGRQYF-----NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
            L+   +         +I D+++     H      +  R G  D+A  L   + ++    
Sbjct: 539 ALEWVNEVHKHAVETGLISDFRVGSAFIH------MYIRCGSIDDARLLFDKLSVR-HVT 591

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPEN--PGAY----VLLSNMYAGAGRW----- 554
            W +++G      +   G       L+++ E   P A     +L +N+   A  W     
Sbjct: 592 TWNAMIGGA---AQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVH 648

Query: 555 ---DDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKV----------------HP 595
               D   +  R+ +  +     C +++    V + +V   V                H 
Sbjct: 649 SHATDAGLVDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHD 708

Query: 596 QSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE--KLAIAYGLIST- 652
              H  +ML E        G VPD +  +  +      GAL    E    A++ GL+S  
Sbjct: 709 AFSHFLQMLRE--------GIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDL 760

Query: 653 KPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIA 687
           + G    +V     CG+   A  +   +  R++ +
Sbjct: 761 RVGNA--LVHMYAKCGSIDDARSVFDDMVERDVFS 793



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 176/628 (28%), Positives = 297/628 (47%), Gaps = 55/628 (8%)

Query: 96  VIWNNIIRGHSLSSSPVVAIKFYVRM----ILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           V  N  + G +  +  V+  K  V M    +  G   +++++  IL+ C K   I   KQ
Sbjct: 80  VCANASVDGAAEQTHNVITAKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQ 139

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +H  ++K G+E + +V   L+ +Y + G L+ AR VF+K   ++   +T +I GYA  G+
Sbjct: 140 VHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGH 199

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
            +DA +++D+M  R+E   PNE T +++L AC    +L+ G  + + I   G  S++ V 
Sbjct: 200 AEDAMRVYDKM--RQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVE 257

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
            AL++MY KCG +  A+ +F+ + +R+VISW VMIGG  H    +EA  LF QM +    
Sbjct: 258 TALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFI 317

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           PN  T++S+L A A  GAL+  K +H++       L ++ +  +L+ MYAK G+I  A  
Sbjct: 318 PNSYTYVSILNANASAGALEWVKEVHSHAVNAGLAL-DLRVGNALVHMYAKSGSIDDARV 376

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VFDGM  + + SW  MI GLA HG+  +A SLF +M   G  P+  T++ +L+A   A  
Sbjct: 377 VFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIAST 436

Query: 452 -----LDIGRQYFN--AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504
                + +  ++      I D +I   L H      +  + G  D+A  +   M    D 
Sbjct: 437 SALEWVKVVHKHAEEAGFISDLRIGNALIH------MYAKCGSIDDARLVFDGM-CDRDV 489

Query: 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPE----NPGAYVLLSNMYAGAGRWDDVATI 560
             W +++G    +G    G       L+++ E    +   Y+ L N +      + V  +
Sbjct: 490 ISWNAMMGGLAQNG---CGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEV 546

Query: 561 RTRLNDKGMKKVPGCSS------IEVGSVVHEFLVGDKVHPQSKHIYEML---------- 604
                + G+       S      I  GS+    L+ DK+  +    +  +          
Sbjct: 547 HKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCG 606

Query: 605 DEIDAL---LEKSGFVPDTSEVL----YDMDEEWKEGALSHHSEKLAIAYGLISTKPGTT 657
            E  +L   +++ GF+PD +  +     ++DEE  E     HS   A   GL+  + G  
Sbjct: 607 REALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSH--ATDAGLVDLRVGNA 664

Query: 658 IRIVKNLRVCGNCHSATKLISKIFNREI 685
             +V     CGN   A ++   +  R +
Sbjct: 665 --LVHTYSKCGNVKYAKQVFDDMVERNV 690


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 279/682 (40%), Positives = 420/682 (61%), Gaps = 9/682 (1%)

Query: 30  NQPSLA-LLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALL 85
           N+ SL+ +L+ C  +++     +VH  +IK G  +  F+ + L+++ A S  G    A+ 
Sbjct: 187 NEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKS--GCPEAAIA 244

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145
           VF  I +P+ V WN +I G  L     +A+K   +M      P+ +T    LK+CA I  
Sbjct: 245 VFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGL 304

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
           +  G+Q+H+ ++K+ +E D FV   LI+MY++ G L+ AR+VF+    +D + + ++I+G
Sbjct: 305 VKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISG 364

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           Y++ GY  +A  LF  M   +E    N++T+ T+L + A   +      V ++    G  
Sbjct: 365 YSNCGYDIEAMSLFTNM--YKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQ 422

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
            + +V N+L+D Y KC  L  A  +FE     D++++  MI  Y+     +EAL ++ +M
Sbjct: 423 YDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRM 482

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
              +I+P+   F S+  ACA L A + GK IH ++ K    L++V    SL++MYAKCG+
Sbjct: 483 QDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGL-LSDVFAGNSLVNMYAKCGS 541

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           I  A  +F+ + ++ + SW+AMI GLA HG   KAL LF +M+  G+ P+ IT V VLSA
Sbjct: 542 IDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSA 601

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           CNHAGL+   R++F  M + + I+P  +HY CMVD+LGR G  DEA  L+K M  +  AA
Sbjct: 602 CNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAA 661

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
           +W +LLGA R+H  +ELG   A+ LL LEPE  G ++LL+N+YA  G WD+VA +R  + 
Sbjct: 662 VWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVAKVRRSMK 721

Query: 566 DKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLY 625
           +  +KK PG S IE+   V+ F+VGD+ HP+SK IY  LD++   L  +G+VP     L+
Sbjct: 722 NSLVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLDDLRERLTSAGYVPMIETDLH 781

Query: 626 DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREI 685
           D+++  KE  L HHSEKLA+A+GLI+T PG  IR+ KNLRVC +CH+A K ISK+ +REI
Sbjct: 782 DVEQIEKEQLLWHHSEKLAVAFGLIATPPGAPIRVKKNLRVCIDCHTAFKFISKVASREI 841

Query: 686 IARDRNRFHHFKDGNCSCNDYW 707
           I RD NRFHHF+DG+CSC DYW
Sbjct: 842 IVRDINRFHHFRDGSCSCGDYW 863



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/430 (27%), Positives = 222/430 (51%), Gaps = 10/430 (2%)

Query: 94  NQVIWNNIIRGHSLSSS-----PVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE 148
           N+  ++++++G SL+ +      +  +     MI +G  PN ++   +L +CA +   + 
Sbjct: 147 NEFTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENY 206

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           G ++H +++KLG +SDPF   +L++MYA++G  E+A  VF +    D VS+ A+I G   
Sbjct: 207 GMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVL 266

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
               D A +L  +M        P+  T+ + L ACA +G ++LG  + S +    +  + 
Sbjct: 267 HEKNDLALKLLGKMG--SYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDS 324

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
            V   LIDMYSKCG L  AR +F+ +  +DVI WN +I GY++     EA+ LF  M + 
Sbjct: 325 FVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKE 384

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            +E N  T  ++L + A   A    + +H    K+  + +   +  SL+D Y KC  ++ 
Sbjct: 385 GLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGY-VANSLLDSYGKCCLLED 443

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A +VF+    + L ++ +MI+  + +G  ++AL ++ RM    ++PD   F  + +AC +
Sbjct: 444 AAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACAN 503

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
               + G+Q    +++   +S        +V++  + G  D+A  +   +  +   + W+
Sbjct: 504 LSAYEQGKQIHVHVLKCGLLSDVFAG-NSLVNMYAKCGSIDDASCIFNEISWRGIVS-WS 561

Query: 509 SLLGACRVHG 518
           +++G    HG
Sbjct: 562 AMIGGLAQHG 571



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 134/449 (29%), Positives = 213/449 (47%), Gaps = 42/449 (9%)

Query: 162 ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA----VSYTALITGYASRGYLDDARQ 217
           E D    ++LI+ Y QNG  E A L + +  L  A     ++++++ G +    L+  +Q
Sbjct: 110 EPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQ 169

Query: 218 LFDEMPIRE---ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274
           +     + E       PNE ++ TVL+ACA +     G  V   +   G  S+    NAL
Sbjct: 170 IHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANAL 229

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
           +DMY+K G    A  +F  I K D++SWN +I G         AL L  +M    + P+ 
Sbjct: 230 LDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSM 289

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
            T  S L ACA +G + LG+ +H+ + K   + ++  +   LIDMY+KCG ++ A  VFD
Sbjct: 290 FTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSF-VGVGLIDMYSKCGLLQDARMVFD 348

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA--------- 445
            M  K +  WN++ISG +  G   +A+SLF+ M  EGL+ +  T   +L +         
Sbjct: 349 LMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGF 408

Query: 446 CNHAGLLDI--GRQY----FNAMIQDY-------------KISPK--LQHYGCMVDLLGR 484
           C     + I  G QY     N+++  Y             ++ P   L  Y  M+    +
Sbjct: 409 CEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQ 468

Query: 485 AGLFDEAEALLKTME---MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE-PENPGA 540
            GL +EA  +   M+   +KPDA I++SL  AC      E G+ +  H+L+     +  A
Sbjct: 469 YGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFA 528

Query: 541 YVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
              L NMYA  G  DD + I   ++ +G+
Sbjct: 529 GNSLVNMYAKCGSIDDASCIFNEISWRGI 557


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 284/699 (40%), Positives = 407/699 (58%), Gaps = 51/699 (7%)

Query: 56  TGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAI 115
           TG  +  F  + L+ +   S  G LS A  VF+ +   + V WN+II  ++    P +A+
Sbjct: 156 TGFMSNVFVGNALVAM--YSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMAL 213

Query: 116 KFYVRMILS-GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINM 174
           + + +M    GF P+  T   +L  CA +   S GKQ H   +   +  + FV   L++M
Sbjct: 214 EMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDM 273

Query: 175 YAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP----------- 223
           YA+ G ++ A  VF+   ++D VS+ A++ GY+  G  +DA +LF++M            
Sbjct: 274 YAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTW 333

Query: 224 ----------------------IREENFVPNESTVVTVLSACAHMGSLELGNWV-CSLIE 260
                                 +      PNE T+++VLS CA +G+L  G  + C  I+
Sbjct: 334 SAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIK 393

Query: 261 ------GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI--EKRDVISWNVMIGGYTHT 312
                  +G G    V N LIDMY+KC  +  AR +F+S+  ++RDV++W VMIGGY+  
Sbjct: 394 YPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQH 453

Query: 313 SDYKEALMLFRQMLQSNIE--PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNV 370
            D  +AL L  +M + + +  PN  T    L ACA L AL +GK IHAY  +N Q  N V
Sbjct: 454 GDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQ--NAV 511

Query: 371 SLWTS--LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMI 428
            L+ S  LIDMYAKCG+I  A  VFD M  K   +W ++++G  MHG  ++AL +F  M 
Sbjct: 512 PLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMR 571

Query: 429 GEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488
             G + D +T + VL AC+H+G++D G +YFN M  D+ +SP  +HY C+VDLLGRAG  
Sbjct: 572 RIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRL 631

Query: 489 DEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548
           + A  L++ M M+P   +W +LL  CR+HG++ELGE  AK + EL   N G+Y LLSNMY
Sbjct: 632 NAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMY 691

Query: 549 AGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEID 608
           A AGRW DV  IR+ +  KG+KK PGCS +E       F VGDK HP +K IY++L +  
Sbjct: 692 ANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHM 751

Query: 609 ALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCG 668
             ++  G+VP+T   L+D+D+E K+  L  HSEKLA+AYG+++T  G  IRI KNLRVCG
Sbjct: 752 QRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCG 811

Query: 669 NCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +CH+A   +S+I + EII RD +RFHHFK+G CSC  YW
Sbjct: 812 DCHTAFTYMSRIIDHEIILRDSSRFHHFKNGLCSCKGYW 850



 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 163/534 (30%), Positives = 258/534 (48%), Gaps = 60/534 (11%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTG---LHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
            + KC  +  +K +H +++  G   L+ T   +S  I +      G LS+A+ +      
Sbjct: 34  FIHKCKTISQVKLIHQKLLSFGILTLNLTSHLISTYISL------GCLSHAVSLLRRFPP 87

Query: 93  PNQVI--WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            +  +  WN++IR +  +      +  +  M    + P+ YTFPF+ K+C +IS++  G 
Sbjct: 88  SDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGD 147

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
             HA     G  S+ FV  +L+ MY++ G L  AR VF++  + D VS+ ++I  YA  G
Sbjct: 148 SSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLG 207

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
               A ++F +M   E  F P++ T+V VL  CA +G+  LG           +  N+ V
Sbjct: 208 KPKMALEMFSKM-TNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFV 266

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF-------- 322
            N L+DMY+K G + +A  +F ++  +DV+SWN M+ GY+    +++A+ LF        
Sbjct: 267 GNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKI 326

Query: 323 ---------------------------RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKW 355
                                      RQML S I+PN+VT +SVL  CA +GAL  GK 
Sbjct: 327 KMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKE 386

Query: 356 IHAY-------IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT--LASWNA 406
           IH Y       + KN     N+ +   LIDMYAKC  +  A  +FD +  K   + +W  
Sbjct: 387 IHCYAIKYPMDLRKNGHGDENMVI-NQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTV 445

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQ--PDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
           MI G + HG A+KAL L S M  E  Q  P+  T    L AC     L IG+Q     ++
Sbjct: 446 MIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALR 505

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           + + +  L    C++D+  + G   +A  +   M M+ +   WTSL+    +HG
Sbjct: 506 NQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNM-MEKNEVTWTSLMTGYGMHG 558



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 127/263 (48%), Gaps = 16/263 (6%)

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRD--VISWNVMIGGYTHTSDYKEALMLFRQ 324
            L++T+ LI  Y   G L  A  L       D  V  WN +I  Y +     + L  F  
Sbjct: 58  TLNLTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCL 117

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           M   +  P++ TF  V  AC  + ++  G   HA + +    ++NV +  +L+ MY++CG
Sbjct: 118 MHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHA-LSRVTGFMSNVFVGNALVAMYSRCG 176

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE-GLQPDDITFVGVL 443
           ++  A +VFD M    + SWN++I   A  GK   AL +FS+M  E G +PDDIT V VL
Sbjct: 177 SLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVL 236

Query: 444 SACNHAGLLDIGRQYF-----NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
             C   G   +G+Q+      + MIQ+  +        C+VD+  + G+ DEA  +   M
Sbjct: 237 PPCASVGTRSLGKQFHGFAVTSEMIQNMFVG------NCLVDMYAKFGMMDEANTVFSNM 290

Query: 499 EMKPDAAIWTSLLGACRVHGRLE 521
            +K D   W +++      GR E
Sbjct: 291 PVK-DVVSWNAMVAGYSQIGRFE 312


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 278/683 (40%), Positives = 414/683 (60%), Gaps = 22/683 (3%)

Query: 35  ALLSKCTNM---QNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           +LLS C ++      KQ+HS +IK G+ +       L+++  V  F D+  A   F T  
Sbjct: 319 SLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDL-YVKCF-DIETAHEYFLTTE 376

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             N V+WN ++  +    +   +   +++M + G +PN YT+P IL++C  + A+  G+Q
Sbjct: 377 TENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQ 436

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IH  V+K G + + +V + LI+MYA++GEL++AR +  +    D VS+TA+I GY     
Sbjct: 437 IHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDL 496

Query: 212 LDDARQLFDEMP---IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
             +A +LF EM    IR +N         + +SACA + +L  G  + +     G   +L
Sbjct: 497 FAEALKLFQEMENQGIRSDNI-----GFSSAISACAGIQALNQGQQIHAQSYISGYSEDL 551

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
            + NAL+ +Y++CG    A   FE I+ +D ISWN +I G+  +   +EAL +F QM Q+
Sbjct: 552 SIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQA 611

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK----NHQKLNNVSLWTSLIDMYAKCG 384
            +E N  TF S + A A    +  GK IHA + K    +  + +NV     LI +Y+KCG
Sbjct: 612 GVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNV-----LITLYSKCG 666

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
           +I+ A++ F  M  K + SWNAMI+G + HG   +A+SLF  M   GL P+ +TFVGVLS
Sbjct: 667 SIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLS 726

Query: 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504
           AC+H GL++ G  YF +M +++ + PK +HY C+VDLLGRA L   A   ++ M ++PDA
Sbjct: 727 ACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDA 786

Query: 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564
            IW +LL AC VH  +E+GE  A+HLLELEPE+   YVLLSNMYA +G+WD     R  +
Sbjct: 787 MIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMM 846

Query: 565 NDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVL 624
            D+G+KK PG S IEV + +H F VGD++HP ++ IYE +D+++    + G+V D   +L
Sbjct: 847 KDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDLNERAGEIGYVQDRYNLL 906

Query: 625 YDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNRE 684
            D+++E K+     HSEKLA+A+GL+S      IR++KNLRVC +CH+  K +SKI NR 
Sbjct: 907 NDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTMPIRVIKNLRVCNDCHNWIKFVSKISNRA 966

Query: 685 IIARDRNRFHHFKDGNCSCNDYW 707
           I+ RD  RFHHF+ G CSC DYW
Sbjct: 967 IVVRDAYRFHHFEGGVCSCKDYW 989



 Score =  258 bits (658), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 160/480 (33%), Positives = 254/480 (52%), Gaps = 9/480 (1%)

Query: 43  MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNII 102
            Q  +Q+H++II  G  ++    + LI++   S  G +  A LVFE +   + V W  +I
Sbjct: 128 FQVTEQIHAKIIHHGFGSSPLVCNPLIDL--YSKNGHVDLAKLVFERLFLKDSVSWVAMI 185

Query: 103 RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE 162
            G S +     AI  + +M  S  +P  Y F  +L +C KI     G+Q+H  ++K GL 
Sbjct: 186 SGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLS 245

Query: 163 SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
           S+ FV  +L+ +Y++ G L +A  +F+K   RD +SY +LI+G A RG+ D A QLF++M
Sbjct: 246 SETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKM 305

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
            +  +   P+  TV ++LSACA +G+   G  + S +   G+ S+L +  +L+D+Y KC 
Sbjct: 306 QL--DCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCF 363

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
           D+  A + F + E  +V+ WNVM+  Y    +  E+  +F QM    + PN  T+ S+L 
Sbjct: 364 DIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILR 423

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
            C  LGALDLG+ IH  + K+  +  NV + + LIDMYAK G +  A  +   +  + + 
Sbjct: 424 TCTSLGALDLGEQIHTQVIKSGFQF-NVYVCSVLIDMYAKHGELDTARGILQRLREEDVV 482

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ-YFNA 461
           SW AMI+G   H    +AL LF  M  +G++ D+I F   +SAC     L+ G+Q +  +
Sbjct: 483 SWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQS 542

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
            I  Y  S  L     +V L  R G   +A    + ++ K D   W +L+      G  E
Sbjct: 543 YISGY--SEDLSIGNALVSLYARCGRAQDAYLAFEKIDAK-DNISWNALISGFAQSGHCE 599



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 133/478 (27%), Positives = 237/478 (49%), Gaps = 38/478 (7%)

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
           G   N  T+ ++ + C    ++ + K++HA + K G + +  + + LI++Y  +GE+++A
Sbjct: 5   GIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNA 64

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
             +F+     +   +  +I+G  ++        LF  M    EN  P+EST  +VL AC+
Sbjct: 65  IKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMIT--ENVTPDESTFASVLRACS 122

Query: 245 -HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN 303
                 ++   + + I  HG GS+  V N LID+YSK G +  A+ +FE +  +D +SW 
Sbjct: 123 GGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWV 182

Query: 304 VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363
            MI G +      EA++LF QM +S + P    F SVL AC  +    LG+ +H +I K 
Sbjct: 183 AMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKW 242

Query: 364 HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSL 423
               +   +  +L+ +Y++ GN+ AAEQ+F  M  +   S+N++ISGLA  G +D+AL L
Sbjct: 243 GLS-SETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQL 301

Query: 424 FSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ------------------- 464
           F +M  + ++PD +T   +LSAC   G    G+Q  + +I+                   
Sbjct: 302 FEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVK 361

Query: 465 --------DYKISPKLQH---YGCMVDLLGRAGLFDEAEALLKTMEMK---PDAAIWTSL 510
                   +Y ++ + ++   +  M+   G+ G   E+  +   M+++   P+   + S+
Sbjct: 362 CFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSI 421

Query: 511 LGACRVHGRLELGESVAKHLLELEPE-NPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
           L  C   G L+LGE +   +++   + N     +L +MYA  G  D    I  RL ++
Sbjct: 422 LRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREE 479



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 156/344 (45%), Gaps = 35/344 (10%)

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
           + E     N  T + +   C + GSL     + + I   G      + + LID+Y   G+
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           +  A  LF+ I   +V  WN +I G        + L LF  M+  N+ P++ TF SVL A
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 344 CAYLGA-LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           C+   A   + + IHA I  +H   ++  +   LID+Y+K G++  A+ VF+ +  K   
Sbjct: 121 CSGGKAPFQVTEQIHAKI-IHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSV 179

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF--- 459
           SW AMISGL+ +G+ D+A+ LF +M    + P    F  VLSAC    L  +G Q     
Sbjct: 180 SWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFI 239

Query: 460 ------------NAMIQDY----------KISPKLQH-----YGCMVDLLGRAGLFDEAE 492
                       NA++  Y          +I  K+       Y  ++  L + G  D A 
Sbjct: 240 VKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRAL 299

Query: 493 ALLKTME---MKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL 533
            L + M+   MKPD     SLL AC   G    G+ +  +++++
Sbjct: 300 QLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKM 343


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 280/673 (41%), Positives = 413/673 (61%), Gaps = 40/673 (5%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGLHNTQFALS-KLIEICAVSPFGDLSYALLVFETIREPN 94
           +L +  ++  +K++H +++         ++  KL+ + A    G+   A  +F+ I + N
Sbjct: 27  ILDQYPDINTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAAC--GEPGLARHIFDEITDKN 84

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
            V +N +IR +  +     A+  Y  M   GFVP+ YT+P +LK+ ++  ++  G QIH 
Sbjct: 85  VVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHG 144

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
            VLK+GL+ + +V   LI MY +   L+ A+ V ++   RD VS+ ++++ YA  G  +D
Sbjct: 145 AVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFND 204

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274
           A +L  EM     N  PN+ T+ ++L A                           VTN  
Sbjct: 205 ALELCREM--EALNLKPNDCTMASLLPA---------------------------VTNTT 235

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
            D      +++  +++F  + K+ VISWNVMI  Y + S  KEA++L+ QM  + +EP+ 
Sbjct: 236 SD------NVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDV 289

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           V+ +SVLPA   L AL LG+ +H + ++  + L N+ L  +LIDMYAKCG ++ A  VF+
Sbjct: 290 VSIVSVLPAYGDLSALSLGRRVHKFAERK-KLLPNLLLENALIDMYAKCGCLRDARAVFN 348

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
            M ++ + SW ++IS     G+   A+++F+ M   GL PD I FV VL+AC+HAGLLD 
Sbjct: 349 QMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDD 408

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
           GR YFN M  +  I+PKL+H+ C+VDLLGRAG  DEA   ++ M ++PD  +W  LL AC
Sbjct: 409 GRYYFNLM-AECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSAC 467

Query: 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPG 574
           RV+  + +G   A  LL L PE+ G YVLLSN+YA AGRW DVA IR+ +  KG+KK+PG
Sbjct: 468 RVYSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKLPG 527

Query: 575 CSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEG 634
            S++E+   VH FL GD  HPQSK IYE LD +   +++ G++P+T   L+D++EE KE 
Sbjct: 528 ISNVELNDGVHTFLAGDHSHPQSKKIYEELDVLVGKMKELGYMPETDSALHDVEEEDKEY 587

Query: 635 ALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFH 694
            L+ HSEKLA+A+ +I+TKPGT IR+ KNLRVCG+CH A KLISKI  REII RD +RFH
Sbjct: 588 HLAVHSEKLAVAFAIINTKPGTPIRVTKNLRVCGDCHVAAKLISKIAEREIIIRDTHRFH 647

Query: 695 HFKDGNCSCNDYW 707
           HF++G CSC DYW
Sbjct: 648 HFQEGCCSCGDYW 660


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 268/630 (42%), Positives = 395/630 (62%), Gaps = 41/630 (6%)

Query: 114 AIKFYVRMILSGFVPNTYTFPFILKSCAKIS----AISEGKQIHAHVLKLGLESDPFVHT 169
           A+  Y RM+  G  P+ YTFP +LK+ A+ +    + +  + +HAHV++LG+  +  V +
Sbjct: 3   AVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVAS 62

Query: 170 SLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENF 229
           SL+  Y   G+  +AR +  +      V++ ALI+G+   G   ++   F +M       
Sbjct: 63  SLVAAYTAGGDGAAARALVGECD--TPVAWNALISGHNRGGRFGESCGSFVDMA--RAGA 118

Query: 230 VPNESTVVTVLSACAH-MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV--- 285
            P   T V+VLSAC      + LG  V   + G G+  +L V NAL+DMY++C D+    
Sbjct: 119 APTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAW 178

Query: 286 ----------------------------KARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
                                       +ARDLF+ + +RD +SW  MI GY   + ++E
Sbjct: 179 KVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFRE 238

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           AL +FR+M  SN+  ++ T +SV+ ACA LGAL++G+W+  Y+ +   K++   +  +LI
Sbjct: 239 ALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAF-VGNALI 297

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI 437
           DMY+KCG+I+ A  VF GM ++   +W A+I GLA++G  ++A+ +F RMI     PD++
Sbjct: 298 DMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEV 357

Query: 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT 497
           TF+GVL+AC HAGL+D GR++F +MI+ Y I+P + HYGC++DLLGRAG   EA   +  
Sbjct: 358 TFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQ 417

Query: 498 MEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557
           M M P++ IW +LL ACRVHG  E+GE VA+ LLEL+PEN   Y+LLSN+YA   RW+DV
Sbjct: 418 MPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPENSMVYILLSNIYAKCNRWEDV 477

Query: 558 ATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFV 617
             +R  + +KG+KK PGCS IE+  ++HEF+ GD+ HP SK IY  L+ I + L   G+ 
Sbjct: 478 RRLRHAIMEKGIKKEPGCSLIEMDGIIHEFVAGDQSHPMSKEIYSKLESIISDLNNVGYF 537

Query: 618 PDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLI 677
           PD +EV  ++ E+ K+  L  HSEKLAIA+ L+S+KP T IRIVKNLR+C +CH+A KLI
Sbjct: 538 PDVTEVFVEVAEKEKKKVLYWHSEKLAIAFALLSSKPNTVIRIVKNLRMCLDCHNAIKLI 597

Query: 678 SKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           S+++ RE++ RDR RFHHF+ G CSC DYW
Sbjct: 598 SRLYGREVVVRDRTRFHHFRHGFCSCKDYW 627



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 122/437 (27%), Positives = 211/437 (48%), Gaps = 41/437 (9%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           + VH+ +++ G+       S L+     +     +   LV E       V WN +I GH+
Sbjct: 43  RAVHAHVVRLGMGRNAHVASSLVAA-YTAGGDGAAARALVGEC---DTPVAWNALISGHN 98

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK-ISAISEGKQIHAHVLKLGLESDP 165
                  +   +V M  +G  P   T+  +L +C K    +  G Q+H  V+  G+  D 
Sbjct: 99  RGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDL 158

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
            V  +L++MYA+  ++ SA  VF+   +R  VS+T+L++G A  G +D+AR LFD MP R
Sbjct: 159 RVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPER 218

Query: 226 E-----------------------------ENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           +                              N   +E T+V+V++ACA +G+LE+G WV 
Sbjct: 219 DTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVR 278

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
             +   G+  +  V NALIDMYSKCG + +A D+F+ +  RD  +W  +I G       +
Sbjct: 279 VYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEE 338

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           EA+ +F +M++ +  P++VTF+ VL AC + G +D G+     + + +    NV  +  +
Sbjct: 339 EAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCI 398

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           ID+  + G I  A    D M     ++ W  +++   +HG ++    +  R++   L P+
Sbjct: 399 IDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLL--ELDPE 456

Query: 436 D----ITFVGVLSACNH 448
           +    I    + + CN 
Sbjct: 457 NSMVYILLSNIYAKCNR 473


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  523 bits (1348), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 269/674 (39%), Positives = 409/674 (60%), Gaps = 6/674 (0%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L L    ++++  K++H  +I +G     FA++ ++ + A     + +Y +  F+ + E 
Sbjct: 37  LKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYNM--FDRMPER 94

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           + V WN +I G++ +    VA+   +RM   G  P++ T   IL + A    +  G  +H
Sbjct: 95  DLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVH 154

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
            +VL+ G ES   V T+L++MY++ G +  AR++F+    R  VS+ ++I GY   G  +
Sbjct: 155 GYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAE 214

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
            A  +F +M   +E   P   TV+  L ACA +G LE G +V  L++   L S++ V N+
Sbjct: 215 GAMLIFQKM--LDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNS 272

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           LI MYSKC  +  A D+F+++  + ++SWN MI GY       EAL  F +M   NI+P+
Sbjct: 273 LISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPD 332

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
             T +SV+PA A L      KWIH  + +      NV + T+L+DMYAKCG I  A ++F
Sbjct: 333 SFTMVSVIPALAELSIPRQAKWIHGLVIRRFLD-KNVFVMTALVDMYAKCGAIHTARKLF 391

Query: 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLD 453
           D M  + + +WNAMI G   HG    ++ LF  M    ++P+DITF+  LSAC+H+GL++
Sbjct: 392 DMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVE 451

Query: 454 IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
            G  +F +M +DY I P + HYG MVDLLGRAG  ++A   ++ M +KP   ++ ++LGA
Sbjct: 452 EGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGA 511

Query: 514 CRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVP 573
           C++H  ++LGE  A  + +L P++ G +VLL+N+YA A  W  VA +RT +   G++K P
Sbjct: 512 CKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTP 571

Query: 574 GCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKE 633
           GCS +E+G+ VH F  G   HPQSK IY  L+ +   +  +G+VPDT+ + +D++++ K 
Sbjct: 572 GCSLVEIGNEVHSFYSGTTSHPQSKKIYSYLETLVDEIRAAGYVPDTNSI-HDVEDDVKV 630

Query: 634 GALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRF 693
             L+ HSEKLAIA+GL++T  GT I I KNLRVCG+CH+ATK IS +  REII RD +RF
Sbjct: 631 QLLNTHSEKLAIAFGLLNTSTGTPIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRF 690

Query: 694 HHFKDGNCSCNDYW 707
           H FKDG CSC DYW
Sbjct: 691 HLFKDGVCSCGDYW 704



 Score =  243 bits (620), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 145/437 (33%), Positives = 234/437 (53%), Gaps = 14/437 (3%)

Query: 101 IIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG 160
           +++G++ SSS   A+ F+ RM      P  Y F ++LK C   S +  GK+IH  V+  G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 161 LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD 220
              + F  T ++NMYA+  ++  A  +F++   RD V +  +I+GYA  G+   A  L  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 221 EMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK 280
            M   EE   P+  T+V++L A A    L +G  V   +   G  S ++V+ AL+DMYSK
Sbjct: 121 RMS--EEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSK 178

Query: 281 CGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSV 340
           CG +  AR +F+ ++ R V+SWN MI GY  + D + A+++F++ML   ++P +VT +  
Sbjct: 179 CGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGA 238

Query: 341 LPACAYLGALDLGKWIHAYIDKNHQKLN-NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK 399
           L ACA LG L+ GK++H  +D+   KL+ +VS+  SLI MY+KC  +  A  +F  +  K
Sbjct: 239 LHACADLGDLERGKFVHKLVDQ--LKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNK 296

Query: 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ-- 457
           TL SWNAMI G A +G  ++AL+ F  M    ++PD  T V V+ A      L I RQ  
Sbjct: 297 TLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAE---LSIPRQAK 353

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
           + + ++    +   +     +VD+  + G    A  L   M  +     W +++     H
Sbjct: 354 WIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNAR-HVITWNAMIDGYGTH 412

Query: 518 GRLELGESVAKHLLELE 534
           G   LG++  +   E++
Sbjct: 413 G---LGKTSVELFKEMK 426


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  523 bits (1348), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 298/726 (41%), Positives = 416/726 (57%), Gaps = 59/726 (8%)

Query: 36  LLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +L  C  + + +    VH+ +  +G     F  + L+ +      G    A  VF+ +RE
Sbjct: 132 VLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRC--GAWENARQVFDEMRE 189

Query: 93  P---NQVIWNNIIRGHSLSSSPVVAIKFYVRMILS-GFVPNTYTFPFILKSCAKISAISE 148
               + V WN+I+  +      + A+K + RM    G  P+  +   +L +CA + A S 
Sbjct: 190 RGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSR 249

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           GKQ+H + L+ GL  D FV  ++++MYA+ G +E A  VF +  ++D VS+ A++TGY+ 
Sbjct: 250 GKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQ 309

Query: 209 RGYLDDARQLFDEMPIREE----NFV-------------------------------PNE 233
            G  DDA  LF++  IREE    N V                               PN 
Sbjct: 310 IGRFDDALGLFEK--IREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNV 367

Query: 234 STVVTVLSACAHMGSLELGN--------WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
            T+V++LS CA  G+L  G         W+ +L E +  G +L V NALIDMYSKC    
Sbjct: 368 VTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDE-NDPGDDLMVINALIDMYSKCKSPK 426

Query: 286 KARDLFESIEKRD--VISWNVMIGGYTHTSDYKEALMLFRQMLQSN--IEPNDVTFLSVL 341
            AR +F+ I  +D  V++W V+IGG     +  EAL LF QMLQ +  + PN  T    L
Sbjct: 427 AARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCAL 486

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
            ACA LGAL  G+ IHAY+ +N  +   + +   LIDMY+K G++ AA  VFD M  +  
Sbjct: 487 MACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNG 546

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
            SW ++++G  MHG+ ++AL +F  M   GL PD +TFV VL AC+H+G++D G  YFN 
Sbjct: 547 VSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNG 606

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
           M +D+ + P  +HY CMVDLL RAG  DEA  L++ M MKP  A+W +LL ACRV+  +E
Sbjct: 607 MNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVE 666

Query: 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
           LGE  A  LLELE  N G+Y LLSN+YA A  W DVA IR  + + G+KK PGCS ++  
Sbjct: 667 LGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGR 726

Query: 582 SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
                F  GD  HP S+ IY++L ++   ++  G+VPD    L+D+D+E K   LS HSE
Sbjct: 727 KGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSE 786

Query: 642 KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
           KLA+AYG+++T PG  IRI KNLR CG+CHSA   IS I   EII RD +RFHHFK+G+C
Sbjct: 787 KLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSC 846

Query: 702 SCNDYW 707
           SC  YW
Sbjct: 847 SCRGYW 852



 Score =  240 bits (613), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 168/555 (30%), Positives = 269/555 (48%), Gaps = 72/555 (12%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGL-HNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           L  +C ++ + + +H Q++  GL H+    +S  +       F   + AL V   +   +
Sbjct: 35  LFHQCKSLASAELIHQQLLVQGLPHDPTHIISMYLT------FNSPAKALSVLRRLHPSS 88

Query: 95  QVI--WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
             +  WN +IR           ++ Y RM   G+ P+ YTFPF+LK+C +I +   G  +
Sbjct: 89  HTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASV 148

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR---DAVSYTALITGYASR 209
           HA V   G E + FV   L++MY + G  E+AR VF++   R   D VS+ +++  Y   
Sbjct: 149 HAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQG 208

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
           G    A ++F+ M   +    P+  ++V VL ACA +G+   G  V       GL  ++ 
Sbjct: 209 GDSIRAMKMFERM-TEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVF 267

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALML-------- 321
           V NA++DMY+KCG + +A  +FE ++ +DV+SWN M+ GY+    + +AL L        
Sbjct: 268 VGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEK 327

Query: 322 ---------------------------FRQMLQSNIEPNDVTFLSVLPACAYLGALDLGK 354
                                      FRQM     EPN VT +S+L  CA  G L  GK
Sbjct: 328 IELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGK 387

Query: 355 WIHAY-------IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK--TLASWN 405
             H +       +D+N    +++ +  +LIDMY+KC + KAA  +FD +  K  ++ +W 
Sbjct: 388 ETHCHAIKWILNLDENDPG-DDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWT 446

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDD------ITFVGVLSACNHAGLLDIGRQYF 459
            +I G A HG+A++AL LFS+M    LQPD+       T    L AC   G L  GRQ  
Sbjct: 447 VLIGGNAQHGEANEALELFSQM----LQPDNFVMPNAFTISCALMACARLGALRFGRQIH 502

Query: 460 NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
             ++++   S  L    C++D+  ++G  D A  +   M  + +   WTSL+    +HGR
Sbjct: 503 AYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQR-NGVSWTSLMTGYGMHGR 561

Query: 520 LELGESVAKHLLELE 534
              GE   +   E++
Sbjct: 562 ---GEEALQIFYEMQ 573


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  523 bits (1348), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 265/627 (42%), Positives = 387/627 (61%), Gaps = 35/627 (5%)

Query: 18  PPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF 77
           P + +  + L+Q+ P L+LL  CT+M  +K++H+Q+I TGL +  FALS+L+  CA+S +
Sbjct: 42  PTNWNASHVLIQSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEW 101

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG-FVPNTYTFPFI 136
            +L Y   +       N   WN  IRG+  S +P+ A+  Y  M+  G  +P+ YT+P +
Sbjct: 102 RNLDYCDKILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLL 161

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
            K CA  S      +I  HV++LG +SD FVH ++I++    GEL +AR +F++S +RD 
Sbjct: 162 FKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDL 221

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           VS+ ++I GY   G  D+A  L+ +M   E N +P+E T++ V+SA A + +L LG  + 
Sbjct: 222 VSWNSIINGYVRCGLADEAFDLYYKMG--ELNVMPDEVTMIGVVSASAQLENLALGRKLH 279

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR------------------- 297
             IE  GL   + + NAL+DMY KC ++  A+ LFE++ K+                   
Sbjct: 280 QSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLE 339

Query: 298 ------------DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
                       DV+ WN +IGG+      KEAL LF +M  S++ P+ +T ++ L AC+
Sbjct: 340 SAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACS 399

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
            LGALD+G W+H Y+DK H    NV+L T+L+DMYAKCGNIK A QVF+ M  +   +W 
Sbjct: 400 QLGALDVGIWMHHYVDK-HNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWT 458

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
           A+I GLA+HG+   A+S FS MI  GL PD+ITF+GVLSAC H GL+D GR YF  M   
Sbjct: 459 AIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSK 518

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
           Y ISPKL+HY C+VDLLGRAG  +EAE L+++M  +PDA +W +L    R+HG + +GE 
Sbjct: 519 YGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGER 578

Query: 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVH 585
            A  LLEL+P + G YVLL+NMY  A  W+    +R  + ++G++K PGCSSIE+  +V+
Sbjct: 579 AASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVY 638

Query: 586 EFLVGDKVHPQSKHIYEMLDEIDALLE 612
           +F++ DK HPQS+ IYE L  +   +E
Sbjct: 639 DFIIRDKSHPQSEKIYECLTRLTRQIE 665


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  523 bits (1347), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 255/621 (41%), Positives = 389/621 (62%), Gaps = 4/621 (0%)

Query: 87  FETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAI 146
           F+ +   N    NN++ G   + +     +  +++++ GF PN YTF  ILK+CA    +
Sbjct: 148 FKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDL 207

Query: 147 SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGY 206
           +EGK IH  V+K G+  D  +  SL+N+YA+ G    A  VF +   RD VS+TALITG+
Sbjct: 208 NEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGF 267

Query: 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS 266
            + GY    R +F++M    E F PN  T +++L +C+ +  ++LG  V + I  + L  
Sbjct: 268 VAEGYGSGLR-IFNQM--LAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDG 324

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML 326
           N  V  AL+DMY+K   L  A  +F  + KRD+ +W V++ GY      ++A+  F QM 
Sbjct: 325 NDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQ 384

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
           +  ++PN+ T  S L  C+ +  LD G+ +H+   K  Q   ++ + ++L+DMYAKCG +
Sbjct: 385 REGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQS-GDMFVASALVDMYAKCGCV 443

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
           + AE VFDG+  +   SWN +I G + HG+  KAL  F  M+ EG  PD++TF+GVLSAC
Sbjct: 444 EDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSAC 503

Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
           +H GL++ G+++FN++ + Y I+P ++HY CMVD+LGRAG F E E+ ++ M++  +  I
Sbjct: 504 SHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLI 563

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
           W ++LGAC++HG +E GE  A  L ELEPE    Y+LLSNM+A  G WDDV  +R  ++ 
Sbjct: 564 WETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMST 623

Query: 567 KGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYD 626
           +G+KK PGCS +EV   VH FL  D  HP+ + I+  L ++   L   G+ P+T  VL++
Sbjct: 624 RGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHN 683

Query: 627 MDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREII 686
           + +  K+  L +HSE+LA+A+ L+ST    TIRI KNLR+CG+CH   K IS+I N+E++
Sbjct: 684 VSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELV 743

Query: 687 ARDRNRFHHFKDGNCSCNDYW 707
            RD N FHHFK+G+CSC ++W
Sbjct: 744 VRDINCFHHFKNGSCSCQNFW 764



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 130/474 (27%), Positives = 232/474 (48%), Gaps = 8/474 (1%)

Query: 46  IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           +K++  ++IK G+       S L+ +        L  A  V E +   +   WN  +   
Sbjct: 8   LKKIIFRVIKNGICPDSHLWSSLVNVYVKCE--SLQCARQVLEEMPIQDVQQWNQKLSSA 65

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
           +       A++ +  M  +    N + F  ++ + A +     G+ IHA V K G ESD 
Sbjct: 66  NSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDI 125

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
            +  + + MY +   +E+    F    + +  S   L++G+      D   ++  ++ + 
Sbjct: 126 LISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLV- 184

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
            E F PN  T +++L  CA  G L  G  +   +   G+  + H+ N+L+++Y+KCG   
Sbjct: 185 -EGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSAN 243

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
            A  +F  I +RDV+SW  +I G+     Y   L +F QML     PN  TF+S+L +C+
Sbjct: 244 YACKVFGEIPERDVVSWTALITGFV-AEGYGSGLRIFNQMLAEGFNPNMYTFISILRSCS 302

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
            L  +DLGK +HA I KN    N+  + T+L+DMYAK   ++ AE +F+ +  + L +W 
Sbjct: 303 SLSDVDLGKQVHAQIVKNSLDGNDF-VGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWT 361

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
            +++G A  G+ +KA+  F +M  EG++P++ T    LS C+    LD GRQ  +  I+ 
Sbjct: 362 VIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKA 421

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
            + S  +     +VD+  + G  ++AE +   + +  D   W +++     HG+
Sbjct: 422 GQ-SGDMFVASALVDMYAKCGCVEDAEVVFDGL-VSRDTVSWNTIICGYSQHGQ 473



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 202/406 (49%), Gaps = 12/406 (2%)

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           K+I   V+K G+  D  + +SL+N+Y +   L+ AR V  +  ++D   +   ++   S 
Sbjct: 9   KKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSP 68

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
             L +A QLF  M  R      N+    +++SA A +G    G  + + +  +G  S++ 
Sbjct: 69  YPLQEAVQLFYLM--RHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDIL 126

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           ++NA + MY K   +      F+++   ++ S N ++ G+  T    +   +  Q+L   
Sbjct: 127 ISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEG 186

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
            EPN  TF+S+L  CA  G L+ GK IH  + K+    ++  LW SL+++YAKCG+   A
Sbjct: 187 FEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDS-HLWNSLVNVYAKCGSANYA 245

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
            +VF  +  + + SW A+I+G    G     L +F++M+ EG  P+  TF+ +L +C+  
Sbjct: 246 CKVFGEIPERDVVSWTALITGFVAEGYGS-GLRIFNQMLAEGFNPNMYTFISILRSCSSL 304

Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
             +D+G+Q    ++++            +VD+  +    ++AE +   + +K D   WT 
Sbjct: 305 SDVDLGKQVHAQIVKNSLDGNDFVGTA-LVDMYAKNRFLEDAETIFNRL-IKRDLFAWTV 362

Query: 510 LLGACRVHGRLELGESVAKHLLELEPE--NPGAYVLLSNMYAGAGR 553
           ++      G+   GE   K  ++++ E   P  + L S++ +G  R
Sbjct: 363 IVAGYAQDGQ---GEKAVKCFIQMQREGVKPNEFTLASSL-SGCSR 404



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 189/384 (49%), Gaps = 46/384 (11%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           +++L  C+++ ++   KQVH+QI+K  L    F  + L+++ A + F  L  A  +F  +
Sbjct: 295 ISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRF--LEDAETIFNRL 352

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            + +   W  I+ G++       A+K +++M   G  PN +T    L  C++I+ +  G+
Sbjct: 353 IKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGR 412

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           Q+H+  +K G   D FV ++L++MYA+ G +E A +VF+    RD VS+  +I GY+  G
Sbjct: 413 QLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHG 472

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLH 269
               A + F+ M   +E  VP+E T + VLSAC+HMG +E G     SL + +G+   + 
Sbjct: 473 QGGKALKAFEAM--LDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIE 530

Query: 270 VTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDY----KEALMLFRQ 324
               ++D+  + G   +     E ++   +V+ W  ++G      +     + A+ LF  
Sbjct: 531 HYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFE- 589

Query: 325 MLQSNIEPN---------------DVTFLSVL---------PACAYLGALDLGKWIHAYI 360
            L+  I+ N               DVT +  L         P C++   +++   +H ++
Sbjct: 590 -LEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSW---VEVNGQVHVFL 645

Query: 361 --DKNHQKLNNVSLWTSLIDMYAK 382
             D +H K+  + L   L D++ K
Sbjct: 646 SHDGSHPKIREIHL--KLQDLHQK 667



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 89/220 (40%), Gaps = 37/220 (16%)

Query: 33  SLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           SL+  S+   + + +Q+HS  IK G     F  S L+++ A    G +  A +VF+ +  
Sbjct: 398 SLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYA--KCGCVEDAEVVFDGLVS 455

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V WN II G+S       A+K +  M+  G VP+  TF  +L +C+ +  I EGK+ 
Sbjct: 456 RDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKK- 514

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
             H              SL  +Y     +E                Y  ++      G  
Sbjct: 515 --HF------------NSLSKIYGITPTIE---------------HYACMVDILGRAGKF 545

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
            +     +EM +     +       TVL AC   G++E G
Sbjct: 546 HEVESFIEEMKLTSNVLIWE-----TVLGACKMHGNIEFG 580


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  523 bits (1347), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 265/627 (42%), Positives = 387/627 (61%), Gaps = 35/627 (5%)

Query: 18  PPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF 77
           P + +  + L+Q+ P L+LL  CT+M  +K++H+Q+I TGL +  FALS+L+  CA+S +
Sbjct: 42  PTNWNASHVLIQSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEW 101

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG-FVPNTYTFPFI 136
            +L Y   +       N   WN  IRG+  S +P+ A+  Y  M+  G  +P+ YT+P +
Sbjct: 102 RNLDYCDKILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLL 161

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
            K CA  S      +I  HV++LG +SD FVH ++I++    GEL +AR +F++S +RD 
Sbjct: 162 FKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDL 221

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           VS+ ++I GY   G  D+A  L+ +M   E N +P+E T++ V+SA A + +L LG  + 
Sbjct: 222 VSWNSIINGYVRCGLADEAFDLYYKMG--ELNVMPDEVTMIGVVSASAQLENLALGRKLH 279

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR------------------- 297
             IE  GL   + + NAL+DMY KC ++  A+ LFE++ K+                   
Sbjct: 280 QSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLE 339

Query: 298 ------------DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
                       DV+ WN +IGG+      KEAL LF +M  S++ P+ +T ++ L AC+
Sbjct: 340 SAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACS 399

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
            LGALD+G W+H Y+DK H    NV+L T+L+DMYAKCGNIK A QVF+ M  +   +W 
Sbjct: 400 QLGALDVGIWMHHYVDK-HNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWT 458

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
           A+I GLA+HG+   A+S FS MI  GL PD+ITF+GVLSAC H GL+D GR YF  M   
Sbjct: 459 AIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSK 518

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
           Y ISPKL+HY C+VDLLGRAG  +EAE L+++M  +PDA +W +L    R+HG + +GE 
Sbjct: 519 YGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGER 578

Query: 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVH 585
            A  LLEL+P + G YVLL+NMY  A  W+    +R  + ++G++K PGCSSIE+  +V+
Sbjct: 579 AASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVY 638

Query: 586 EFLVGDKVHPQSKHIYEMLDEIDALLE 612
           +F++ DK HPQS+ IYE L  +   +E
Sbjct: 639 DFIIRDKSHPQSEKIYECLTRLTRQIE 665


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 283/725 (39%), Positives = 407/725 (56%), Gaps = 77/725 (10%)

Query: 50  HSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP---NQVIWNNIIRGHS 106
           H  I   G  +  F  + L+ + + S  G L  A LVF+ I      + + WN+I+  H 
Sbjct: 172 HGLICCNGFESNVFVCNALVAMYSRS--GSLEDASLVFDEITRKGIDDVISWNSIVAAHV 229

Query: 107 LSSSPVVAIKFYVRMIL------SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG 160
             S+P  A+  +  M        +    +  +   IL +CA + A+ + K+IH++ ++ G
Sbjct: 230 KGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNG 289

Query: 161 LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD 220
             +D FV  +LI+ YA+ G ++ A  VFN    +D VS+ A++TGY   G    A +LF 
Sbjct: 290 TFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFK 349

Query: 221 EMPIREENFV-----------------------------------PNESTVVTVLSACAH 245
            M  R+EN                                     PN  T++++LSACA 
Sbjct: 350 NM--RKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACAS 407

Query: 246 MGSLELGNWVCSLIEGHGLG------------------SNLHVTNALIDMYSKCGDLVKA 287
           +G+L  G      +E H                      +L V NALIDMYSKC     A
Sbjct: 408 LGALSQG------METHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAA 461

Query: 288 RDLFESIEKRD--VISWNVMIGGYTHTSDYKEALMLFRQMLQS--NIEPNDVTFLSVLPA 343
           R +F SI +R+  V++W VMIGGY    D  +AL LF +M+     + PN  T   +L A
Sbjct: 462 RTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMA 521

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS-LIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           CA+L +L +GK IHAY+ ++H+  ++V    + LIDMY+KCG++  A  VFD M  +   
Sbjct: 522 CAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEV 581

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           SW +M+SG  MHG+  +AL +F +M   G  PDDI+F+ +L AC+H+G++D G  YF+ M
Sbjct: 582 SWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIM 641

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
             DY +    QHY C++DLL R+G  D+A   ++ M M+P AAIW +LL ACRVH  +EL
Sbjct: 642 RSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVEL 701

Query: 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582
            E     L+ ++ EN G+Y L+SN+YA A RW DVA IR  +   G+KK PGCS ++   
Sbjct: 702 AEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKK 761

Query: 583 VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEK 642
               F VGD+ HP S  IY +L+ +   ++  G+VP+T+  L+D+D+E K   L+ HSEK
Sbjct: 762 GTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLTEHSEK 821

Query: 643 LAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCS 702
           LA+AYGL++T PG  IRI KNLRVCG+CHSA   ISKI + EII RD +RFHHFK+G+CS
Sbjct: 822 LALAYGLLTTSPGCPIRITKNLRVCGDCHSAFIYISKIVDHEIIVRDSSRFHHFKNGSCS 881

Query: 703 CNDYW 707
           C  YW
Sbjct: 882 CGGYW 886



 Score =  238 bits (607), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 162/561 (28%), Positives = 261/561 (46%), Gaps = 77/561 (13%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHN-----TQFALSKLIEICAVSP------------- 76
           +LL +C ++  ++Q+H +II  GL +        +L  L     VSP             
Sbjct: 36  SLLKECRSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKSLGTGVVASYLA 95

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
            G  S AL V E +     V WN ++R H        AI    RM+ +G  P+ +T P+ 
Sbjct: 96  CGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTLPYA 155

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN---KSSL 193
           LK+C ++ +   G   H  +   G ES+ FV  +L+ MY+++G LE A LVF+   +  +
Sbjct: 156 LKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGI 215

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNEST----VVTVLSACAHMGSL 249
            D +S+ +++  +        A  LF EM         NE +    +V +L ACA + +L
Sbjct: 216 DDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKAL 275

Query: 250 ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309
                + S    +G  ++  V NALID Y+KCG +  A ++F  +E +DV+SWN M+ GY
Sbjct: 276 PQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGY 335

Query: 310 THTSDYKEALMLFRQMLQSNI-----------------------------------EPND 334
           T +  +  A  LF+ M + NI                                   EPN 
Sbjct: 336 TQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNS 395

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKN-----------HQKLNNVSLWTSLIDMYAKC 383
           VT +S+L ACA LGAL  G   HAY  K                 ++ +  +LIDMY+KC
Sbjct: 396 VTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKC 455

Query: 384 GNIKAAEQVFDGMGY--KTLASWNAMISGLAMHGKADKALSLFSRMIGE--GLQPDDITF 439
            + KAA  +F+ +    + + +W  MI G A +G ++ AL LFS MI +   + P+  T 
Sbjct: 456 RSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTI 515

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG-CMVDLLGRAGLFDEAEALLKTM 498
             +L AC H   L +G+Q    + + ++    +     C++D+  + G  D A  +  +M
Sbjct: 516 SCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSM 575

Query: 499 EMKPDAAIWTSLLGACRVHGR 519
             + + + WTS++    +HGR
Sbjct: 576 PKRNEVS-WTSMMSGYGMHGR 595



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 131/290 (45%), Gaps = 49/290 (16%)

Query: 24  PYKLLQNQPSLA-LLSKCTNMQNI---KQVHSQIIKTGLHNTQ--FALSKLIEICAVSPF 77
           PY +  N  +++ +L  C ++ ++   KQ+H+ + +   + +   F  + LI++   S  
Sbjct: 505 PYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDM--YSKC 562

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           GD+  A  VF+++ + N+V W +++ G+ +      A+  + +M  +GFVP+  +F  +L
Sbjct: 563 GDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLL 622

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
            +C+           H+ ++  GL+           M +  G + SA+            
Sbjct: 623 YACS-----------HSGMVDQGLDYFDI-------MRSDYGVIASAQ------------ 652

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
            Y  +I   A  G LD A +   EMP+      P+ +  V +LSAC    ++EL  +  +
Sbjct: 653 HYACVIDLLARSGRLDKAWKTIQEMPME-----PSAAIWVALLSACRVHSNVELAEYALN 707

Query: 258 LI---EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES--IEKRDVISW 302
            +   +    GS   ++N +     +  D+ + R L +   I+KR   SW
Sbjct: 708 KLVSMKAENDGSYTLISN-IYATARRWKDVARIRQLMKKSGIKKRPGCSW 756


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 297/770 (38%), Positives = 424/770 (55%), Gaps = 100/770 (12%)

Query: 36  LLSKCTNMQN----IKQVHSQIIKTGLHNTQFALSKLIEI-------------------- 71
           LL K  N  N     + VH ++IK+GL  + + ++ L+ +                    
Sbjct: 19  LLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLR 78

Query: 72  ---------CAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI 122
                     A +  GD+  +   F+ + + + V W  +I G+        AI+    M+
Sbjct: 79  TAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMM 138

Query: 123 LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELE 182
             G  P+ +T   +L S A    +  GK++H+ ++KLGL  +  V  SL+NMYA+ G+  
Sbjct: 139 REGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPM 198

Query: 183 SARLVFNKSSL-------------------------------RDAVSYTALITGYASRGY 211
            A++VF++  +                               RD V++ ++I+GY  RGY
Sbjct: 199 MAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGY 258

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
              A  +F +M +R+    P+  T+ +VLSACA++  L +G  + S I   G   +  V 
Sbjct: 259 DLRALDMFSKM-LRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVL 317

Query: 272 NALIDMYSKCG---------------------------------DLVKARDLFESIEKRD 298
           NALI MYS+CG                                 D+ +A+++F+S++ RD
Sbjct: 318 NALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRD 377

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
           V++W  MI GY     Y EA+ LFR M+     PN  T  ++L   + L +L  GK IH 
Sbjct: 378 VVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHG 437

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG-YKTLASWNAMISGLAMHGKA 417
              K+ + + +VS+  +LI MYAK G+I +A + FD +   +   SW +MI  LA HG A
Sbjct: 438 SAVKSGE-IYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHA 496

Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
           ++AL LF  M+ EGL+PD IT+VGV SAC HAGL++ GRQYF+ M    KI P L HY C
Sbjct: 497 EEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYAC 556

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537
           MVDL GRAGL  EA+  ++ M ++PD   W SLL ACRV+  ++LG+  A+ LL LEPEN
Sbjct: 557 MVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPEN 616

Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQS 597
            GAY  L+N+Y+  G+W++ A IR  + D  +KK  G S IEV   VH F V D +HPQ 
Sbjct: 617 SGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQK 676

Query: 598 KHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTT 657
             IY  + +I   ++K G+VPDT+ VL+D++EE KE  L HHSEKLAIA+GLIST   TT
Sbjct: 677 NEIYITMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTT 736

Query: 658 IRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +RI+KNLRVC +CH+A K ISK+  REII RD  RFHHFKDG CSC DYW
Sbjct: 737 LRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 280/685 (40%), Positives = 406/685 (59%), Gaps = 29/685 (4%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           KQ+H   ++ G   T F  + L+ + A     D S AL  FE+  + + V WN +I   S
Sbjct: 217 KQLHGYSLRVGDQKT-FTNNALMAMYAKLGRVDDSKAL--FESFVDRDMVSWNTMISSFS 273

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG-LESDP 165
            S     A+ F+  M+L G   +  T   +L +C+ +  +  GK+IHA+VL+   L  + 
Sbjct: 274 QSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENS 333

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           FV ++L++MY    ++ES R VF+    R    + A+I+GYA  G  + A  LF EM I+
Sbjct: 334 FVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEM-IK 392

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
               +PN +T+ +V+ AC H  +      +       G   + +V NAL+DMYS+ G + 
Sbjct: 393 VAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMD 452

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN---------------- 329
            +  +F+S+E RD +SWN MI GY  +  Y  AL+L  +M +                  
Sbjct: 453 ISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGG 512

Query: 330 -IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
             +PN +T ++VLP CA L A+  GK IHAY  +N    +++++ ++L+DMYAKCG +  
Sbjct: 513 PYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRN-MLASDITVGSALVDMYAKCGCLNL 571

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG-----LQPDDITFVGVL 443
           + +VF+ M  K + +WN +I    MHGK ++AL LF  M+ E       +P+++TF+ V 
Sbjct: 572 SRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVF 631

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
           +AC+H+GL+  G   F  M  D+ + P   HY C+VDLLGRAG  +EA  L+ TM  + D
Sbjct: 632 AACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFD 691

Query: 504 -AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562
               W+SLLGACR+H  +ELGE  AK+LL LEP     YVLLSN+Y+ AG W+    +R 
Sbjct: 692 KVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRK 751

Query: 563 RLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSE 622
            +   G+KK PGCS IE    VH+F+ GD  HPQS+ ++  L+ +   + K G+VPDTS 
Sbjct: 752 NMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSC 811

Query: 623 VLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFN 682
           VL+++DE+ KE  L  HSEKLAIA+G+++T PGTTIR+ KNLRVC +CH+ATK ISKI  
Sbjct: 812 VLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIME 871

Query: 683 REIIARDRNRFHHFKDGNCSCNDYW 707
           REII RD  RFHHFK+G CSC DYW
Sbjct: 872 REIIVRDVRRFHHFKEGTCSCGDYW 896



 Score =  228 bits (581), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 141/438 (32%), Positives = 226/438 (51%), Gaps = 32/438 (7%)

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
           W + +R  + S+    AI  Y+ M +SG  P+ + FP +LK+ + +  +  G+QIHA  +
Sbjct: 60  WVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAV 119

Query: 158 KLGLESDPF-VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDAR 216
           K G  S    V  +L+NMY + G +     VF++ + RD VS+ + I         + A 
Sbjct: 120 KFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQAL 179

Query: 217 QLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH------- 269
           + F  M +  EN   +  T+V+V  AC+++G          ++ G  LG  LH       
Sbjct: 180 EAFRAMQM--ENMELSSFTLVSVALACSNLG----------VMHGLRLGKQLHGYSLRVG 227

Query: 270 -----VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
                  NAL+ MY+K G +  ++ LFES   RD++SWN MI  ++ +  + EAL  FR 
Sbjct: 228 DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRL 287

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           M+   +E + VT  SVLPAC++L  LD+GK IHAY+ +N+  + N  + ++L+DMY  C 
Sbjct: 288 MVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCR 347

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG-EGLQPDDITFVGVL 443
            +++  +VFD +  + +  WNAMISG A +G  +KAL LF  MI   GL P+  T   V+
Sbjct: 348 QVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVM 407

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHY--GCMVDLLGRAGLFDEAEALLKTMEMK 501
            AC H              +   K+  K   Y    ++D+  R G  D +E +  +ME++
Sbjct: 408 PACVHCEAFSNKESIHGYAV---KLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVR 464

Query: 502 PDAAIWTSLLGACRVHGR 519
            D   W +++    + GR
Sbjct: 465 -DRVSWNTMITGYVLSGR 481



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 139/544 (25%), Positives = 254/544 (46%), Gaps = 49/544 (9%)

Query: 35  ALLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           A+L   + +Q++K   Q+H+  +K G  ++   ++  + +      G +     VF+ I 
Sbjct: 97  AVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTL-VNMYGKCGGIGDVCKVFDRIT 155

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS---AISE 148
           + +QV WN+ I           A++ +  M +     +++T   +  +C+ +     +  
Sbjct: 156 DRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRL 215

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           GKQ+H + L++G +   F + +L+ MYA+ G ++ ++ +F     RD VS+  +I+ ++ 
Sbjct: 216 GKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQ 274

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS-LIEGHGLGSN 267
                +A   F  M +  E    +  T+ +VL AC+H+  L++G  + + ++  + L  N
Sbjct: 275 SDRFSEALAFFRLMVL--EGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIEN 332

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
             V +AL+DMY  C  +   R +F+ I  R +  WN MI GY      ++AL+LF +M++
Sbjct: 333 SFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIK 392

Query: 328 -SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
            + + PN  T  SV+PAC +  A    + IH Y  K   K +   +  +L+DMY++ G +
Sbjct: 393 VAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRY-VQNALMDMYSRMGKM 451

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM-----------------IG 429
             +E +FD M  +   SWN MI+G  + G+   AL L   M                  G
Sbjct: 452 DISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKG 511

Query: 430 EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489
              +P+ IT + VL  C     +  G++     I++  ++  +     +VD+  + G  +
Sbjct: 512 GPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNM-LASDITVGSALVDMYAKCGCLN 570

Query: 490 EAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549
            +  +   M  K +   W  L+ AC +HG+   GE               A  L  NM A
Sbjct: 571 LSRRVFNEMPNK-NVITWNVLIMACGMHGK---GEE--------------ALELFKNMVA 612

Query: 550 GAGR 553
            AGR
Sbjct: 613 EAGR 616



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 140/332 (42%), Gaps = 57/332 (17%)

Query: 297 RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
           R   SW   +   T ++D++EA+  + +M  S   P++  F +VL A + L  L  G+ I
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGK 416
           HA   K     ++V++  +L++MY KCG I    +VFD +  +   SWN+ I+ L    K
Sbjct: 115 HAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEK 174

Query: 417 ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL---LDIGRQYF-------------- 459
            ++AL  F  M  E ++    T V V  AC++ G+   L +G+Q                
Sbjct: 175 WEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTFTN 234

Query: 460 NAMIQDYK---------------ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP-- 502
           NA++  Y                +   +  +  M+    ++  F EA A  + M ++   
Sbjct: 235 NALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVE 294

Query: 503 -DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIR 561
            D     S+L AC    RL++G+ +  ++L           L+ N + G+   D      
Sbjct: 295 LDGVTIASVLPACSHLERLDVGKEIHAYVLRNND-------LIENSFVGSALVDMYCN-- 345

Query: 562 TRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKV 593
                        C  +E G  V + ++G ++
Sbjct: 346 -------------CRQVESGRRVFDHILGRRI 364


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 284/717 (39%), Positives = 410/717 (57%), Gaps = 63/717 (8%)

Query: 50  HSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI--REPNQVI-WNNIIRGHS 106
           H  I   G  +  F  + L+ +   S  G L  A ++F+ I  R  + VI WN+I+  H 
Sbjct: 33  HGLICCNGFESNVFICNALVAM--YSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHV 90

Query: 107 LSSSPVVAIKFYVRMIL------SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG 160
            SS+   A+  + +M L      +    +  +   IL +C  + A+ + K++H + ++ G
Sbjct: 91  KSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNG 150

Query: 161 LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD 220
              D FV  +LI+ YA+ G +E+A  VFN    +D VS+ A++ GY+  G    A +LF 
Sbjct: 151 TFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFK 210

Query: 221 EMPIREENF-----------------------------------VPNESTVVTVLSACAH 245
            M  R+EN                                    +PN  T+++VLSACA 
Sbjct: 211 NM--RKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACAS 268

Query: 246 MGSLELGNWV-------CSLIEGHGLGS---NLHVTNALIDMYSKCGDLVKARDLFESI- 294
           +G+   G  +       C L   +  G    +L V NALIDMYSKC     AR +F+ I 
Sbjct: 269 LGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIP 328

Query: 295 -EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS--NIEPNDVTFLSVLPACAYLGALD 351
            E+R+V++W VMIGG+    D  +AL LF +M+     + PN  T   +L ACA+L A+ 
Sbjct: 329 LEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIR 388

Query: 352 LGKWIHAYIDKNHQKLNNVSLWTS-LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISG 410
           +GK IHAY+ ++HQ  ++     + LI+MY+KCG++  A  VFD M  K+  SW +M++G
Sbjct: 389 IGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTG 448

Query: 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470
             MHG+  +AL +F +M   G  PDDITF+ VL AC+H G++D G  YF++M  DY ++P
Sbjct: 449 YGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTP 508

Query: 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHL 530
           + +HY   +DLL R G  D+A   +K M M+P A +W +LL ACRVH  +EL E     L
Sbjct: 509 RAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKL 568

Query: 531 LELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVG 590
           +E+  EN G+Y L+SN+YA AGRW DVA IR  +   G+KK PGCS ++       F VG
Sbjct: 569 VEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVG 628

Query: 591 DKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLI 650
           D+ HP S  IY +L+ +   ++  G+VP+T+  L+D+DEE K   L  HSEKLA+AYGL+
Sbjct: 629 DRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLL 688

Query: 651 STKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +T PG  IRI KNLRVCG+CHSA   ISKI + EI+ RD +RFHHFK+G+CSC  YW
Sbjct: 689 TTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 745



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 136/455 (29%), Positives = 224/455 (49%), Gaps = 57/455 (12%)

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           M+ +G   + +T P +LK+C ++ +   G   H  +   G ES+ F+  +L+ MY++ G 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 181 LESARLVFNKSSLR---DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNEST-- 235
           LE A ++F++ + R   D +S+ ++++ +        A  LF +M +       NE +  
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 236 --VVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
             +V +L AC  + ++     V      +G   ++ V NALID Y+KCG +  A  +F  
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 180

Query: 294 IEKRDVISWNVMIGGYTHTSDYK-----------------------------------EA 318
           +E +DV+SWN M+ GY+ + ++K                                   EA
Sbjct: 181 MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEA 240

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH-QKLNN-------- 369
           L +FRQM+ S   PN VT +SVL ACA LGA   G  IHAY  KN    L+N        
Sbjct: 241 LNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDED 300

Query: 370 VSLWTSLIDMYAKCGNIKAAEQVFDG--MGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
           + ++ +LIDMY+KC + KAA  +FD   +  + + +W  MI G A +G ++ AL LF  M
Sbjct: 301 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 360

Query: 428 IGE--GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG-CMVDLLGR 484
           I E  G+ P+  T   +L AC H   + IG+Q    +++ ++          C++++  +
Sbjct: 361 ISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSK 420

Query: 485 AGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
            G  D A  +  +M  K  A  WTS++    +HGR
Sbjct: 421 CGDVDTARHVFDSMSQK-SAISWTSMMTGYGMHGR 454



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 126/479 (26%), Positives = 204/479 (42%), Gaps = 111/479 (23%)

Query: 235 TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
           T+  VL AC  + S   G+    LI  +G  SN+ + NAL+ MYS+CG L +A  +F+ I
Sbjct: 12  TLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEI 71

Query: 295 EKR---DVISWNVMIGGYTHTSDYKEALMLFRQML------QSNIEPNDVTFLSVLPACA 345
            +R   DVISWN ++  +  +S+   AL LF +M        +N   + ++ +++LPAC 
Sbjct: 72  TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 131

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
            L A+   K +H    +N   L+ V +  +LID YAKCG ++ A +VF+ M +K + SWN
Sbjct: 132 SLKAVPQTKEVHGNAIRNGTFLD-VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWN 190

Query: 406 AM-----------------------------------ISGLAMHGKADKALSLFSRMIGE 430
           AM                                   I+G +  G + +AL++F +MI  
Sbjct: 191 AMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFS 250

Query: 431 GLQPDDITFVGVLSACNHAGLLDIGRQ-------------------------YFNAMIQD 465
           G  P+ +T + VLSAC   G    G +                          +NA+I  
Sbjct: 251 GSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDM 310

Query: 466 YKISPKLQHYGCMVD---------------LLGRAGLFDEAEALLKTMEM-------KPD 503
           Y      +    + D               + G A   D  +AL   +EM        P+
Sbjct: 311 YSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPN 370

Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVL---LSNMYAGAGRWDDVATI 560
           A   + +L AC     + +G+ +  ++L     +  AY +   L NMY+  G   DV T 
Sbjct: 371 AYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCG---DVDTA 427

Query: 561 RTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPD 619
           R   +    K     +S+         + G  +H +     ++ D+    + K+GFVPD
Sbjct: 428 RHVFDSMSQKSAISWTSM---------MTGYGMHGRGSEALDIFDK----MRKAGFVPD 473


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 278/679 (40%), Positives = 409/679 (60%), Gaps = 43/679 (6%)

Query: 33  SLALLSKC----TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFE 88
           S  LL+K      +++ +K++H+ I     H       KL+   + +  G+      VF+
Sbjct: 20  SFGLLAKALDQNPDIKTLKKLHTMIFYLNSHQNPSLGIKLMR--SYAACGEPGLTRKVFD 77

Query: 89  TIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE 148
            + + N V +N +IR +  +      +  +  M+  GF P+ YT+P +LK+C+    +  
Sbjct: 78  EMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRY 137

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           G  IH  VLK+GL+ + FV   LI MY + G L  AR VF++   +D VS+ +++ GYA 
Sbjct: 138 GLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAH 197

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
               DDA ++  EM    +   P+  T+ +++ A A+  S                    
Sbjct: 198 NMRFDDALEICREMEDYGQK--PDGCTMASLMPAVANTSS-------------------- 235

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
                         +++    +F ++E++++ISWNVMI  Y   S   +A+ L+ QM + 
Sbjct: 236 -------------ENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKC 282

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            +EP+ +TF SVLPAC  L AL LG+ IH Y++K  +   N+ L  SLIDMYA+CG +  
Sbjct: 283 RVEPDAITFASVLPACGDLSALLLGRRIHEYVEKK-KLCPNLLLENSLIDMYARCGCLDD 341

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A++VFD M ++ +ASW ++IS   M G+   A++LF+ M+  G  PD I FV +LSAC+H
Sbjct: 342 AKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSH 401

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
           +GLLD GR YF  M  DY+I+P+++HY C+VDLLGRAG  DEA  ++K M ++P+  +W 
Sbjct: 402 SGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWA 461

Query: 509 SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568
           +LL +CRV   +++G   A +LL+L PE  G YVLLSN+YA AGRW +V  IR+ +  K 
Sbjct: 462 TLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRKK 521

Query: 569 MKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
           ++K PG S++E+ + VH FL GD  HPQSK IYE L  + A +++ G+VP+T   L+D++
Sbjct: 522 IRKTPGISNVELNNQVHTFLAGDTSHPQSKEIYEELGVLVAKMKELGYVPETDSALHDVE 581

Query: 629 EEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIAR 688
           EE KEG L+ HSEKLAI + L++T+    IRI KNLRVCG+CH A KLISKI  REII R
Sbjct: 582 EEDKEGHLAVHSEKLAIVFALLNTQE-YQIRITKNLRVCGDCHIAAKLISKIVEREIIVR 640

Query: 689 DRNRFHHFKDGNCSCNDYW 707
           D NRFHHFKDG CSC DYW
Sbjct: 641 DTNRFHHFKDGVCSCGDYW 659


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 273/659 (41%), Positives = 400/659 (60%), Gaps = 5/659 (0%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           VH+ + K G  +  F  + LI+  +V  + +   A  VF+ I   + V W  ++  +  +
Sbjct: 167 VHACVYKLGFDSDAFVGTALIDCYSVCGYAEC--ARQVFDAIEYKDMVSWTGMVACYVEN 224

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVH 168
                ++K + RM + GF PN +TF  +LK+C  +   + GK +H    K     + FV 
Sbjct: 225 ECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVG 284

Query: 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
             LI++Y ++G+++ A  VF +    D + ++ +I  YA     ++A ++F  M  R   
Sbjct: 285 VELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRM--RRGL 342

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288
            +PN+ T+ ++L ACA +  L+LGN +   +   GL  N+ V+NAL+DMY+KCG +  + 
Sbjct: 343 VLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSL 402

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
            LF        +SWN +I GY    + ++AL+LF+ ML+  ++  +VT+ SVL ACA + 
Sbjct: 403 QLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIA 462

Query: 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI 408
           AL+ G  IH+   K     N V +  +LIDMYAKCGNIK A  VFD +      SWNAMI
Sbjct: 463 ALEPGSQIHSLSVKTIYDKNTV-VGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMI 521

Query: 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
           SG ++HG   +AL  F  M+    +PD +TFVG+LSAC++AGLLD G+ YF +M+++Y I
Sbjct: 522 SGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDI 581

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
            P  +HY CMV LLGR+G  D+A  L+  +  +P   +W +LL AC +H  +ELG   A+
Sbjct: 582 EPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQ 641

Query: 529 HLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFL 588
            +LE+EPE+   +VLLSN+YA A RW +VA+IRT +  KG++K PG S IE    VH F 
Sbjct: 642 RVLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFS 701

Query: 589 VGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYG 648
           VGD  HP +K I  ML+ ++      G+VPD S VL D+++  KE  L  HSE+LA+AYG
Sbjct: 702 VGDTSHPDTKLINGMLEWLNMKARNEGYVPDFSSVLLDVEDVDKEQRLWVHSERLALAYG 761

Query: 649 LISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           LI T   + +RI+KNLR+C +CH+A KLISKI  R+II RD NRFHHF +G CSC DYW
Sbjct: 762 LIRTPSISPLRIIKNLRICADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820



 Score =  219 bits (557), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 169/550 (30%), Positives = 254/550 (46%), Gaps = 42/550 (7%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K +H +IIK G     FA + L+       +  L  A  +F+ + + N V +  +I+G+S
Sbjct: 64  KYLHCEIIKKGNCLDLFANNILLNF--YVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYS 121

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
                  AI  + R+   G   N + F  +LK          G  +HA V KLG +SD F
Sbjct: 122 QCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAF 181

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V T+LI+ Y+  G  E AR VF+    +D VS+T ++  Y      +++ +LF  M I  
Sbjct: 182 VGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIV- 240

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
             F PN  T  +VL AC  +    +G  V            L V   LID+Y K GD+  
Sbjct: 241 -GFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDD 299

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A  +FE + K DVI W+ MI  Y  +   +EA+ +F +M +  + PN  T  S+L ACA 
Sbjct: 300 ALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACAS 359

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
           L  L LG  IH ++ K    + NV +  +L+DMYAKCG ++ + Q+F      T  SWN 
Sbjct: 360 LVDLQLGNQIHCHVVKVGLDM-NVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNT 418

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF------- 459
           +I G    G  +KAL LF  M+   +Q  ++T+  VL AC     L+ G Q         
Sbjct: 419 VIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTI 478

Query: 460 --------NAMIQDYKISPKLQHYGCMVDLLGR---------------AGLFDEA----E 492
                   NA+I  Y     ++    + D+L                  GL+ EA    E
Sbjct: 479 YDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFE 538

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA--YVLLSNMYAG 550
           ++L+T E KPD   +  +L AC   G L+ G++  K ++E     P A  Y  +  +   
Sbjct: 539 SMLET-ECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGR 597

Query: 551 AGRWDDVATI 560
           +G  D  A +
Sbjct: 598 SGHLDKAAKL 607



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/329 (31%), Positives = 164/329 (49%), Gaps = 3/329 (0%)

Query: 129 NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF 188
           NTY +  +L+SC +    + GK +H  ++K G   D F +  L+N Y +   L  A  +F
Sbjct: 43  NTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLF 102

Query: 189 NKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS 248
           ++   R+ VS+  LI GY+      +A  LF  +  + E    N     TVL        
Sbjct: 103 DEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRL--QGEGHELNPFVFSTVLKLLVSAEW 160

Query: 249 LELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGG 308
            +LG  V + +   G  S+  V  ALID YS CG    AR +F++IE +D++SW  M+  
Sbjct: 161 AKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVAC 220

Query: 309 YTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN 368
           Y     ++E+L LF +M     +PN+ TF SVL AC  L   ++GK +H    K    L 
Sbjct: 221 YVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKT-SYLE 279

Query: 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMI 428
            + +   LID+Y K G++  A QVF+ M    +  W+ MI+  A   ++++A+ +F RM 
Sbjct: 280 ELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMR 339

Query: 429 GEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
              + P+  T   +L AC     L +G Q
Sbjct: 340 RGLVLPNQFTLASLLQACASLVDLQLGNQ 368



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 160/314 (50%), Gaps = 12/314 (3%)

Query: 27  LLQNQPSLA-LLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSY 82
           +L NQ +LA LL  C ++ +++   Q+H  ++K GL    F  + L+++ A    G +  
Sbjct: 343 VLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYA--KCGRMEN 400

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           +L +F        V WN +I G+  + +   A+  +  M+         T+  +L++CA 
Sbjct: 401 SLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAG 460

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
           I+A+  G QIH+  +K   + +  V  +LI+MYA+ G ++ ARLVF+     D VS+ A+
Sbjct: 461 IAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAM 520

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN-WVCSLIEG 261
           I+GY+  G   +A + F+ M   E    P++ T V +LSAC++ G L+ G  +  S++E 
Sbjct: 521 ISGYSVHGLYGEALKTFESM--LETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEE 578

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALM 320
           + +         ++ +  + G L KA  L   I  +  V+ W  ++      +D +   +
Sbjct: 579 YDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRI 638

Query: 321 LFRQMLQSNIEPND 334
             +++L+  IEP D
Sbjct: 639 SAQRVLE--IEPED 650


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 284/717 (39%), Positives = 410/717 (57%), Gaps = 63/717 (8%)

Query: 50  HSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI--REPNQVI-WNNIIRGHS 106
           H  I   G  +  F  + L+ +   S  G L  A ++F+ I  R  + VI WN+I+  H 
Sbjct: 140 HGLICCNGFESNVFICNALVAM--YSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHV 197

Query: 107 LSSSPVVAIKFYVRMIL------SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG 160
            SS+   A+  + +M L      +    +  +   IL +C  + A+ + K++H + ++ G
Sbjct: 198 KSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNG 257

Query: 161 LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD 220
              D FV  +LI+ YA+ G +E+A  VFN    +D VS+ A++ GY+  G    A +LF 
Sbjct: 258 TFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFK 317

Query: 221 EMPIREENF-----------------------------------VPNESTVVTVLSACAH 245
            M  R+EN                                    +PN  T+++VLSACA 
Sbjct: 318 NM--RKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACAS 375

Query: 246 MGSLELGNWV-------CSLIEGHGLGS---NLHVTNALIDMYSKCGDLVKARDLFESI- 294
           +G+   G  +       C L   +  G    +L V NALIDMYSKC     AR +F+ I 
Sbjct: 376 LGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIP 435

Query: 295 -EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS--NIEPNDVTFLSVLPACAYLGALD 351
            E+R+V++W VMIGG+    D  +AL LF +M+     + PN  T   +L ACA+L A+ 
Sbjct: 436 LEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIR 495

Query: 352 LGKWIHAYIDKNHQKLNNVSLWTS-LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISG 410
           +GK IHAY+ ++HQ  ++     + LI+MY+KCG++  A  VFD M  K+  SW +M++G
Sbjct: 496 IGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTG 555

Query: 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470
             MHG+  +AL +F +M   G  PDDITF+ VL AC+H G++D G  YF++M  DY ++P
Sbjct: 556 YGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTP 615

Query: 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHL 530
           + +HY   +DLL R G  D+A   +K M M+P A +W +LL ACRVH  +EL E     L
Sbjct: 616 RAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKL 675

Query: 531 LELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVG 590
           +E+  EN G+Y L+SN+YA AGRW DVA IR  +   G+KK PGCS ++       F VG
Sbjct: 676 VEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVG 735

Query: 591 DKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLI 650
           D+ HP S  IY +L+ +   ++  G+VP+T+  L+D+DEE K   L  HSEKLA+AYGL+
Sbjct: 736 DRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLL 795

Query: 651 STKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +T PG  IRI KNLRVCG+CHSA   ISKI + EI+ RD +RFHHFK+G+CSC  YW
Sbjct: 796 TTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 852



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 152/498 (30%), Positives = 242/498 (48%), Gaps = 57/498 (11%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G   YALLV E +     V WN +IR H        AI    RM+ +G   + +T P +L
Sbjct: 65  GATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVL 124

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR--- 194
           K+C ++ +   G   H  +   G ES+ F+  +L+ MY++ G LE A ++F++ + R   
Sbjct: 125 KACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGID 184

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNES----TVVTVLSACAHMGSLE 250
           D +S+ ++++ +        A  LF +M +       NE     ++V +L AC  + ++ 
Sbjct: 185 DVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVP 244

Query: 251 LGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYT 310
               V      +G   ++ V NALID Y+KCG +  A  +F  +E +DV+SWN M+ GY+
Sbjct: 245 QTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYS 304

Query: 311 HTSDYK-----------------------------------EALMLFRQMLQSNIEPNDV 335
            + ++K                                   EAL +FRQM+ S   PN V
Sbjct: 305 QSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCV 364

Query: 336 TFLSVLPACAYLGALDLGKWIHAYIDKNH-QKLNN--------VSLWTSLIDMYAKCGNI 386
           T +SVL ACA LGA   G  IHAY  KN    L+N        + ++ +LIDMY+KC + 
Sbjct: 365 TIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSF 424

Query: 387 KAAEQVFDGMGY--KTLASWNAMISGLAMHGKADKALSLFSRMIGE--GLQPDDITFVGV 442
           KAA  +FD +    + + +W  MI G A +G ++ AL LF  MI E  G+ P+  T   +
Sbjct: 425 KAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCI 484

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG-CMVDLLGRAGLFDEAEALLKTMEMK 501
           L AC H   + IG+Q    +++ ++          C++++  + G  D A  +  +M  K
Sbjct: 485 LMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQK 544

Query: 502 PDAAIWTSLLGACRVHGR 519
             A  WTS++    +HGR
Sbjct: 545 -SAISWTSMMTGYGMHGR 561



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/453 (28%), Positives = 218/453 (48%), Gaps = 55/453 (12%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +L  C +++ +   K+VH   I+ G     F  + LI+  A +  G +  A+ VF  +  
Sbjct: 233 ILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALID--AYAKCGLMENAVKVFNMMEF 290

Query: 93  PNQVIWNNIIRGHSLSS------------------------SPVV-----------AIKF 117
            + V WN ++ G+S S                         + V+           A+  
Sbjct: 291 KDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNV 350

Query: 118 YVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKL----------GLESDPFV 167
           + +MI SG +PN  T   +L +CA + A S+G +IHA+ LK           G + D  V
Sbjct: 351 FRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMV 410

Query: 168 HTSLINMYAQNGELESARLVFNKSSL--RDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           + +LI+MY++    ++AR +F+   L  R+ V++T +I G+A  G  +DA +LF EM   
Sbjct: 411 YNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISE 470

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL--GSNLHVTNALIDMYSKCGD 283
                PN  T+  +L ACAH+ ++ +G  + + +  H     S   V N LI+MYSKCGD
Sbjct: 471 PYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGD 530

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           +  AR +F+S+ ++  ISW  M+ GY       EAL +F +M ++   P+D+TFL VL A
Sbjct: 531 VDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYA 590

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI-KAAEQVFDGMGYKTLA 402
           C++ G +D G      +  ++        +   ID+ A+ G + KA + V D     T  
Sbjct: 591 CSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAV 650

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
            W A++S   +H   + A    ++++    + D
Sbjct: 651 VWVALLSACRVHSNVELAEHALNKLVEMNAEND 683



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 147/562 (26%), Positives = 238/562 (42%), Gaps = 124/562 (22%)

Query: 160 GLESDPFVH-----TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
            L S+PF+      T ++  Y   G  + A LV  + +   AV +  LI  +  +G LD 
Sbjct: 41  ALPSEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDS 100

Query: 215 ARQLFDEM---PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
           A  +   M     R ++F     T+  VL AC  + S   G+    LI  +G  SN+ + 
Sbjct: 101 AINVSCRMLRAGTRLDHF-----TLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFIC 155

Query: 272 NALIDMYSKCGDLVKARDLFESIEKR---DVISWNVMIGGYTHTSDYKEALMLFRQML-- 326
           NAL+ MYS+CG L +A  +F+ I +R   DVISWN ++  +  +S+   AL LF +M   
Sbjct: 156 NALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLI 215

Query: 327 ----QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
                +N   + ++ +++LPAC  L A+   K +H    +N   L+ V +  +LID YAK
Sbjct: 216 VHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLD-VFVGNALIDAYAK 274

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAM----------------------------------- 407
           CG ++ A +VF+ M +K + SWNAM                                   
Sbjct: 275 CGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAV 334

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ---------- 457
           I+G +  G + +AL++F +MI  G  P+ +T + VLSAC   G    G +          
Sbjct: 335 IAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCL 394

Query: 458 ---------------YFNAMIQDYKISPKLQHYGCMVD---------------LLGRAGL 487
                           +NA+I  Y      +    + D               + G A  
Sbjct: 395 LTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQY 454

Query: 488 FDEAEALLKTMEM-------KPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540
            D  +AL   +EM        P+A   + +L AC     + +G+ +  ++L     +  A
Sbjct: 455 GDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSA 514

Query: 541 YVL---LSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQS 597
           Y +   L NMY+  G   DV T R   +    K     +S+         + G  +H + 
Sbjct: 515 YFVANCLINMYSKCG---DVDTARHVFDSMSQKSAISWTSM---------MTGYGMHGRG 562

Query: 598 KHIYEMLDEIDALLEKSGFVPD 619
               ++ D+    + K+GFVPD
Sbjct: 563 SEALDIFDK----MRKAGFVPD 580



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 120/291 (41%), Gaps = 51/291 (17%)

Query: 24  PYKLLQNQPSLA-LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGD 79
           PY +  N  +++ +L  C ++  I   KQ+H+ +++   +++         I   S  GD
Sbjct: 471 PYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGD 530

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKS 139
           +  A  VF+++ + + + W +++ G+ +      A+  + +M  +GFVP+  TF  +L +
Sbjct: 531 VDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYA 590

Query: 140 CAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSY 199
           C+    + +G                   +   +M A  G    A              Y
Sbjct: 591 CSHCGMVDQGL------------------SYFDSMSADYGLTPRAE------------HY 620

Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS-L 258
              I   A  G LD A +   +MP+      P     V +LSAC    ++EL     + L
Sbjct: 621 AYAIDLLARFGRLDKAWKTVKDMPME-----PTAVVWVALLSACRVHSNVELAEHALNKL 675

Query: 259 IE--GHGLGSNLHVTNALIDMYSKCG---DLVKARDLFE--SIEKRDVISW 302
           +E      GS   ++N    +Y+  G   D+ + R L +   I+KR   SW
Sbjct: 676 VEMNAENDGSYTLISN----IYATAGRWKDVARIRHLMKKSGIKKRPGCSW 722


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 297/726 (40%), Positives = 415/726 (57%), Gaps = 59/726 (8%)

Query: 36  LLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +L  C  + + +    VH+ +  +G     F  + L+ +      G    A  VF+ +RE
Sbjct: 151 VLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRC--GAWENARQVFDEMRE 208

Query: 93  P---NQVIWNNIIRGHSLSSSPVVAIKFYVRMILS-GFVPNTYTFPFILKSCAKISAISE 148
               + V WN+I+  +      + A+K + RM    G  P+  +   +L +CA + A S 
Sbjct: 209 RGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSR 268

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           GKQ+H + L+ GL  D FV  ++++MYA+ G +E A  VF +  ++D VS+ A++TGY+ 
Sbjct: 269 GKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQ 328

Query: 209 RGYLDDARQLFDEMPIREE----NFV-------------------------------PNE 233
            G  DDA  LF++  IREE    N V                               PN 
Sbjct: 329 IGRFDDALGLFEK--IREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNV 386

Query: 234 STVVTVLSACAHMGSLELGN--------WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
            T+V++LS CA  G+L  G         W+ +L E +  G +L V NALIDMYSKC    
Sbjct: 387 VTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDE-NDPGDDLMVINALIDMYSKCKSPK 445

Query: 286 KARDLFESIEKRD--VISWNVMIGGYTHTSDYKEALMLFRQMLQSN--IEPNDVTFLSVL 341
            AR +F+ I  +D  V++W V+IGG     +  EAL LF QMLQ +  + PN  T    L
Sbjct: 446 AARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCAL 505

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
            ACA LGAL  G+ IHAY+ +N  +   + +   LIDMY+K G++ AA  VFD M  +  
Sbjct: 506 MACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNG 565

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
            SW ++++G  MHG+ ++AL +F  M    L PD +TFV VL AC+H+G++D G  YFN 
Sbjct: 566 VSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNG 625

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
           M +D+ + P  +HY CMVDLL RAG  DEA  L++ M MKP  A+W +LL ACRV+  +E
Sbjct: 626 MNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVE 685

Query: 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
           LGE  A  LLELE  N G+Y LLSN+YA A  W DVA IR  + + G+KK PGCS ++  
Sbjct: 686 LGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGR 745

Query: 582 SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
                F  GD  HP S+ IY++L ++   ++  G+VPD    L+D+D+E K   LS HSE
Sbjct: 746 KGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSE 805

Query: 642 KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
           KLA+AYG+++T PG  IRI KNLR CG+CHSA   IS I   EII RD +RFHHFK+G+C
Sbjct: 806 KLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSC 865

Query: 702 SCNDYW 707
           SC  YW
Sbjct: 866 SCRGYW 871



 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 169/555 (30%), Positives = 269/555 (48%), Gaps = 72/555 (12%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGL-HNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           L  +C ++ + +  H Q++  GL H+    +S  +       F   + AL V   +   +
Sbjct: 54  LFHQCKSLASAELTHQQLLVQGLPHDPTHIISMYLT------FNSPAKALSVLRRLHPSS 107

Query: 95  QVI--WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
             +  WN +IR           ++ Y RM   G+ P+ YTFPF+LK+C +I +   G  +
Sbjct: 108 HTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASV 167

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR---DAVSYTALITGYASR 209
           HA V   G E + FV   L++MY + G  E+AR VF++   R   D VS+ +++  Y   
Sbjct: 168 HAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQG 227

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
           G    A ++F+ M   +    P+  ++V VL ACA +G+   G  V       GL  ++ 
Sbjct: 228 GDSIRAMKMFERM-TEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVF 286

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALML-------- 321
           V NA++DMY+KCG + +A  +FE ++ +DV+SWN M+ GY+    + +AL L        
Sbjct: 287 VGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEK 346

Query: 322 ---------------------------FRQMLQSNIEPNDVTFLSVLPACAYLGALDLGK 354
                                      FRQML    EPN VT +S+L  CA  G L  GK
Sbjct: 347 IELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGK 406

Query: 355 WIHAY-------IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK--TLASWN 405
             H +       +D+N    +++ +  +LIDMY+KC + KAA  +FD +  K  ++ +W 
Sbjct: 407 ETHCHAIKWILNLDENDPG-DDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWT 465

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDD------ITFVGVLSACNHAGLLDIGRQYF 459
            +I G A HG+A++AL LFS+M    LQPD+       T    L AC   G L  GRQ  
Sbjct: 466 VLIGGNAQHGEANEALELFSQM----LQPDNFVMPNAFTISCALMACARLGALRFGRQIH 521

Query: 460 NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
             ++++   S  L    C++D+  ++G  D A  +   M  + +   WTSL+    +HGR
Sbjct: 522 AYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQR-NGVSWTSLMTGYGMHGR 580

Query: 520 LELGESVAKHLLELE 534
              GE   +   E++
Sbjct: 581 ---GEEALQIFYEMQ 592


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 267/662 (40%), Positives = 402/662 (60%), Gaps = 6/662 (0%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +Q+H  I+K+G        + L+     +   D   A  VF+ + E + + WN+II G+ 
Sbjct: 215 EQLHGYILKSGFGERNSVGNSLVAFYLKNHRVD--SARKVFDEMTERDVISWNSIINGYV 272

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +      +  +V+M+ SG   +  T   +   CA    IS G+ +H   +K     +  
Sbjct: 273 SNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDR 332

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
              +L++MY++ G+L+SA++VF + S R  VSYT++I GYA  G   +A +LF+EM   E
Sbjct: 333 FCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEME--E 390

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           E   P+  TV  VL+ CA    L+ G  V   I+ + +G ++ V+NAL+DMY+KCG + +
Sbjct: 391 EGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMRE 450

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVLPACA 345
           A  +F  +  +D+ISWN +IGGY+      EAL LF  +L +    P++ T   VLPACA
Sbjct: 451 AELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACA 510

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
            L A D G+ IH YI +N    ++  +  SL+DMYAKCG +  A  +FD +  K L SW 
Sbjct: 511 SLSAFDKGREIHGYIMRNGY-FSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWT 569

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
            MI+G  MHG   +A++LF++M   G++PD+I+FV +L AC+H+GL+D G ++FN M  +
Sbjct: 570 VMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHE 629

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
            KI P ++HY C+VD+L R G   +A   ++ M + PDA IW +LL  CR+H  ++L E 
Sbjct: 630 CKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAER 689

Query: 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVH 585
           VA+ + ELEPEN G YVL++N+YA A +W++V  +R R+  +G++K PGCS IE+   V+
Sbjct: 690 VAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVN 749

Query: 586 EFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAI 645
            F+ GD  +P+++ I   L  + A + + G+ P T   L D +E  KE AL  HSEKLA+
Sbjct: 750 IFVAGDSSNPETEKIEAFLRGVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAM 809

Query: 646 AYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCND 705
           A G+IS+  G  IR+ KNLRVCG+CH   K +SK+  REI+ RD NRFH FKDG+CSC  
Sbjct: 810 ALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRG 869

Query: 706 YW 707
           +W
Sbjct: 870 FW 871



 Score =  226 bits (575), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 157/512 (30%), Positives = 250/512 (48%), Gaps = 41/512 (8%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           GDL  A  VF+ ++    + WN ++   + S     +I  + +M+ SG   ++YTF  + 
Sbjct: 143 GDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVS 202

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
           KS + + +++ G+Q+H ++LK G      V  SL+  Y +N  ++SAR VF++ + RD +
Sbjct: 203 KSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVI 262

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           S+ ++I GY S G  +    +F +M         + +T+V+V + CA    + LG  V  
Sbjct: 263 SWNSIINGYVSNGLAEKGLSVFVQMLF--SGIEIDLATIVSVFAGCADSRLISLGRAVHC 320

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
                         N L+DMYSKCGDL  A+ +F  +  R V+S+  MI GY       E
Sbjct: 321 FGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGE 380

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           A+ LF +M +  I P+  T  +VL  CA    LD GK +H +I +N     ++ +  +L+
Sbjct: 381 AVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGF-DIFVSNALM 439

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG-LQPDD 436
           DMYAKCG+++ AE VF  M  K + SWN +I G + +  A++ALSLF+ ++ E    PD+
Sbjct: 440 DMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDE 499

Query: 437 ITFVGVLSACNHAGLLDIGRQ---------YF------NAMIQDYK-------------- 467
            T   VL AC      D GR+         YF      N+++  Y               
Sbjct: 500 RTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDD 559

Query: 468 -ISPKLQHYGCMVDLLGRAGLFDEAEALLKTME---MKPDAAIWTSLLGACRVHGRLELG 523
             S  L  +  M+   G  G   EA AL   M    ++PD   + SLL AC   G ++ G
Sbjct: 560 ITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEG 619

Query: 524 E---SVAKHLLELEPENPGAYVLLSNMYAGAG 552
               ++ +H  ++EP     Y  + +M A  G
Sbjct: 620 WRFFNIMRHECKIEP-TVEHYACIVDMLARTG 650



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/382 (28%), Positives = 187/382 (48%), Gaps = 5/382 (1%)

Query: 132 TFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKS 191
           T   +L+ CA   ++ +GK++   +   G   D  + + L  MY   G+L+ A  VF++ 
Sbjct: 96  TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQV 155

Query: 192 SLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL 251
            +  A+ +  L+   A  G    +  LF +M         +  T   V  + + + S+  
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMM--SSGVEMDSYTFSCVSKSFSSLRSVNG 213

Query: 252 GNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311
           G  +   I   G G    V N+L+  Y K   +  AR +F+ + +RDVISWN +I GY  
Sbjct: 214 GEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVS 273

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
               ++ L +F QML S IE +  T +SV   CA    + LG+ +H +  K      +  
Sbjct: 274 NGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSRED-R 332

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
              +L+DMY+KCG++ +A+ VF  M  +++ S+ +MI+G A  G A +A+ LF  M  EG
Sbjct: 333 FCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 392

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
           + PD  T   VL+ C    LLD G++  +  I++  +   +     ++D+  + G   EA
Sbjct: 393 ISPDVYTVTAVLNCCARNRLLDEGKR-VHEWIKENDMGFDIFVSNALMDMYAKCGSMREA 451

Query: 492 EALLKTMEMKPDAAIWTSLLGA 513
           E +   M +K D   W +++G 
Sbjct: 452 ELVFSEMRVK-DIISWNTVIGG 472



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/411 (26%), Positives = 193/411 (46%), Gaps = 49/411 (11%)

Query: 235 TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
           T+ +VL  CA   SL+ G  V + I G+G   + ++ + L  MY+ CGDL +A  +F+ +
Sbjct: 96  TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQV 155

Query: 295 EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGK 354
           +    + WN+++     + D+  ++ LF++M+ S +E +  TF  V  + + L +++ G+
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGE 215

Query: 355 WIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMH 414
            +H YI K+     N S+  SL+  Y K   + +A +VFD M  + + SWN++I+G   +
Sbjct: 216 QLHGYILKSGFGERN-SVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSN 274

Query: 415 GKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR---------------QYF 459
           G A+K LS+F +M+  G++ D  T V V + C  + L+ +GR               ++ 
Sbjct: 275 GLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFC 334

Query: 460 NAMIQDYKISPKLQ---------------HYGCMVDLLGRAGLFDEAEALLKTME---MK 501
           N ++  Y     L                 Y  M+    R GL  EA  L + ME   + 
Sbjct: 335 NTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 394

Query: 502 PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSN----MYAGAGRWDDV 557
           PD    T++L  C  +  L+ G+ V + + E    + G  + +SN    MYA  G   + 
Sbjct: 395 PDVYTVTAVLNCCARNRLLDEGKRVHEWIKE---NDMGFDIFVSNALMDMYAKCGSMREA 451

Query: 558 ATIRTRLNDKGM---KKVPG-----CSSIEVGSVVHEFLVGDKVHPQSKHI 600
             + + +  K +     V G     C + E  S+ +  LV  +  P  + +
Sbjct: 452 ELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTV 502


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 288/739 (38%), Positives = 433/739 (58%), Gaps = 78/739 (10%)

Query: 42  NMQNIKQVHSQIIKTG---LH--NTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQV 96
            ++   ++H+++  +G   LH  + +  L+ L+      P   L YAL +F+ +  P+  
Sbjct: 11  TVRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPL-HLRYALHLFDRM-PPSTF 68

Query: 97  IWNNIIRGHSLS-SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCA---KISAISEGKQI 152
           +++  +R  S + S P      + RM  +G  P+ +TF F+ K  +   +  ++     +
Sbjct: 69  LFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTML 128

Query: 153 HAHVLKLGLESD-PFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           HA  L+  L S  PFV  SLI+MY + G    AR  F++  ++DAV++T LI+G A  G 
Sbjct: 129 HAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGM 188

Query: 212 LDDARQLFDEMPIRE-----------------------------ENFVPNESTVVTVLSA 242
           L D + L  + P+R+                                 P+E TV+ VLSA
Sbjct: 189 LCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSA 248

Query: 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA--------------- 287
           CA +  LELG  +  L+E  G+ ++ ++  ALIDMY+KCGD   A               
Sbjct: 249 CAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQS 308

Query: 288 -----------------RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
                            R LF+ +E RD+I++N M+ GY H+   +EAL+LF  M + ++
Sbjct: 309 WNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDL 368

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL--NNVSLWTSLIDMYAKCGNIKA 388
             ++ T +++L ACA LGAL  G+ +HA I+   Q+L   ++ L T+L+DMY KCG +  
Sbjct: 369 RVDNFTVVNLLTACASLGALQQGRALHACIE---QRLVEADIYLGTALLDMYMKCGRVDE 425

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A  VF  MG + + +W AMI+GLA +G    AL  F +M  +G QP+ ++++ VL+AC+H
Sbjct: 426 ATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSH 485

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
           + LL+ GR YF+ M   Y I P+++HYGCM+DLLGR+GL DEA  L+KTM ++P+A IW 
Sbjct: 486 SCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWA 545

Query: 509 SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568
           S+L ACRVH  ++L +  A+HLL+LEP+  G YV L N+Y  + +W++ + IR  + ++ 
Sbjct: 546 SILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQ 605

Query: 569 MKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
           +KK  G SSI V   VH+F+V DK HP+   I  ML+EI   L+  G+ P TS++  D+D
Sbjct: 606 VKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQITVDVD 665

Query: 629 EEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIAR 688
           EE KE AL  HSEKLAIA+GLI+  P   + I KNLRVC +CHSA KLIS+++NREII R
Sbjct: 666 EEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNREIIVR 725

Query: 689 DRNRFHHFKDGNCSCNDYW 707
           DR+RFHHF++G CSCND+W
Sbjct: 726 DRSRFHHFREGTCSCNDFW 744


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 282/690 (40%), Positives = 405/690 (58%), Gaps = 37/690 (5%)

Query: 47   KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
            KQVH+  ++ G   T +  + L+ + A    G ++ A  +F      + V WN +I   S
Sbjct: 454  KQVHAYTLRNGDLRT-YTNNALVTMYA--RLGRVNDAKALFGVFDGKDLVSWNTVISSLS 510

Query: 107  LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG-LESDP 165
             +     A+ +   MI+ G  P+  T   +L +C+++  +  G++IH + L+ G L  + 
Sbjct: 511  QNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENS 570

Query: 166  FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
            FV T+L++MY    + +  RLVF+    R    + AL+ GYA   + D A +LF EM I 
Sbjct: 571  FVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEM-IS 629

Query: 226  EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
            E  F PN +T  +VL AC           +   I   G G + +V NAL+DMYS+ G + 
Sbjct: 630  ESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVE 689

Query: 286  KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE-------------- 331
             ++ +F  + KRD++SWN MI G      Y +AL L  +M +   E              
Sbjct: 690  ISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGG 749

Query: 332  ----PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN-NVSLWTSLIDMYAKCGNI 386
                PN VT ++VLP CA L AL  GK IHAY  K  QKL  +V++ ++L+DMYAKCG +
Sbjct: 750  VPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVK--QKLAMDVAVGSALVDMYAKCGCL 807

Query: 387  KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG------LQPDDITFV 440
              A +VFD M  + + +WN +I    MHGK ++AL LF  M   G      ++P+++T++
Sbjct: 808  NLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYI 867

Query: 441  GVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEM 500
             + +AC+H+G++D G   F+ M   + + P+  HY C+VDLLGR+G   EA  L+ TM  
Sbjct: 868  AIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPS 927

Query: 501  ---KPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557
               K DA  W+SLLGACR+H  +E GE  AKHL  LEP     YVL+SN+Y+ AG WD  
Sbjct: 928  NLNKVDA--WSSLLGACRIHQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQA 985

Query: 558  ATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFV 617
              +R ++ + G++K PGCS IE G  VH+FL GD  HPQSK ++E L+ +   + K G+V
Sbjct: 986  LGVRKKMKEMGVRKEPGCSWIEHGDEVHKFLSGDASHPQSKELHEYLETLSQRMRKEGYV 1045

Query: 618  PDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLI 677
            PD S VL+++D+E KE  L  HSE+LAIA+GL++T PGTTIR+ KNLRVC +CH ATK+I
Sbjct: 1046 PDISCVLHNVDDEEKETMLCGHSERLAIAFGLLNTPPGTTIRVAKNLRVCNDCHVATKII 1105

Query: 678  SKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            SKI +REII RD  RFHHF +G CSC DYW
Sbjct: 1106 SKIVDREIILRDVRRFHHFANGTCSCGDYW 1135



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 156/511 (30%), Positives = 253/511 (49%), Gaps = 24/511 (4%)

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
           R P+Q  W +++R  + SSS   AI  Y  M+ +   P+ + FP +LK+ A +  +  GK
Sbjct: 293 RSPSQ--WIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGK 350

Query: 151 QIHAHVLKLG--LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           QIHAHV K G    S   V  SL+NMY + G+L +AR VF+    RD VS+ ++I     
Sbjct: 351 QIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCR 410

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHM-GSLELGNWVCSLIEGHGLGSN 267
               + +  LF  M    EN  P   T+V+V  AC+H+ G + LG  V +    +G    
Sbjct: 411 FEEWELSLHLFRLM--LSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLR 467

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
            +  NAL+ MY++ G +  A+ LF   + +D++SWN +I   +    ++EALM    M+ 
Sbjct: 468 TYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIV 527

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
             + P+ VT  SVLPAC+ L  L +G+ IH Y  +N   + N  + T+L+DMY  C   K
Sbjct: 528 DGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPK 587

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG-LQPDDITFVGVLSAC 446
               VFDG+  +T+A WNA+++G A +   D+AL LF  MI E    P+  TF  VL AC
Sbjct: 588 KGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPAC 647

Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
               +    ++  +  I              ++D+  R G  + ++ +   M  K D   
Sbjct: 648 VRCKVFS-DKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMN-KRDIVS 705

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
           W +++  C V GR +   ++   +   + E+ G+   +         ++D   +  + N 
Sbjct: 706 WNTMITGCIVCGRYDDALNLLHEMQRRQGED-GSDTFVD--------YEDDGGVPFKPNS 756

Query: 567 KGMKKV-PGCSSIEV---GSVVHEFLVGDKV 593
             +  V PGC+++     G  +H + V  K+
Sbjct: 757 VTLMTVLPGCAALAALGKGKEIHAYAVKQKL 787



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 128/496 (25%), Positives = 229/496 (46%), Gaps = 27/496 (5%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           KQ+H+ + K G             +      GDL+ A  VF+ I + + V WN++I    
Sbjct: 350 KQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLC 409

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKI-SAISEGKQIHAHVLKLGLESDP 165
                 +++  +  M+     P ++T   +  +C+ +   +  GKQ+HA+ L+ G +   
Sbjct: 410 RFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLRT 468

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           + + +L+ MYA+ G +  A+ +F     +D VS+  +I+  +     ++A      M + 
Sbjct: 469 YTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIV- 527

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWV-CSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
            +   P+  T+ +VL AC+ +  L +G  + C  +    L  N  V  AL+DMY  C   
Sbjct: 528 -DGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQP 586

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVLPA 343
            K R +F+ + +R V  WN ++ GY       +AL LF +M+ +S   PN  TF SVLPA
Sbjct: 587 KKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPA 646

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
           C         + IH YI K     +   +  +L+DMY++ G ++ ++ +F  M  + + S
Sbjct: 647 CVRCKVFSDKEGIHGYIVKRGFGKDKY-VQNALMDMYSRMGRVEISKTIFGRMNKRDIVS 705

Query: 404 WNAMISGLAMHGKADKALSLFSRMI------------------GEGLQPDDITFVGVLSA 445
           WN MI+G  + G+ D AL+L   M                   G   +P+ +T + VL  
Sbjct: 706 WNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPG 765

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           C     L  G++  +A     K++  +     +VD+  + G  + A  +   M ++ +  
Sbjct: 766 CAALAALGKGKE-IHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIR-NVI 823

Query: 506 IWTSLLGACRVHGRLE 521
            W  L+ A  +HG+ E
Sbjct: 824 TWNVLIMAYGMHGKGE 839


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 265/585 (45%), Positives = 362/585 (61%), Gaps = 12/585 (2%)

Query: 128 PNTYTFPFILKSCAKIS-AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARL 186
           P+  TFP  LKS +++   +  G+Q+HA  LKL   ++P V TSL+ +YA+ G L  A+ 
Sbjct: 115 PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQR 174

Query: 187 VFNKSSLRDAVSYTALITGYASRGYLDDA----RQLFDEMPIREENFVPNESTVVTVLSA 242
           VF++      VS+TALIT Y   G L +A    R  F           P+  T V VL+A
Sbjct: 175 VFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAF------ANGMRPDSFTAVRVLTA 228

Query: 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
           CA +  L  G  V    E  G+  ++ V  A +D+Y KCG++ KAR++F+ +  +D ++W
Sbjct: 229 CARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAW 288

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
             M+GGY      +EAL LF  M    + P+       L AC  LGALDLG+     +D 
Sbjct: 289 GAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDW 348

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALS 422
           + + L+N  L T+LIDMYAKCG+   A  VF  M  K +  WNAMI GL M G    A +
Sbjct: 349 D-EFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFT 407

Query: 423 LFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482
           L  +M   G++ +D TF+G+L +C H GL+  GR+YF+ M + Y ISP+++HYGC+VDLL
Sbjct: 408 LIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLL 467

Query: 483 GRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV 542
            RAGL  EA  L+  M M  +A I  +LLG C++H   EL E V   L+ LEP N G YV
Sbjct: 468 SRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYV 527

Query: 543 LLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYE 602
           +LSN+Y+  GRW+D A +R  + +KG++KVP CS +E    VHEF VGDK HP S  IY+
Sbjct: 528 MLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYK 587

Query: 603 MLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVK 662
            LDE+   ++  G+ P T  V++D+++E KE  L HHSEKLAIA+ L+ T PG TIR+ K
Sbjct: 588 KLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTK 647

Query: 663 NLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           NLRVC +CH+A KLIS+I +REII RD NRFH F+DG+CSCNDYW
Sbjct: 648 NLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 692



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/383 (28%), Positives = 199/383 (51%), Gaps = 5/383 (1%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +Q+H++ +K   H     L+ L+ + A    G L  A  VF+ +  P+ V W  +I  + 
Sbjct: 138 EQLHARSLKLPSHTNPHVLTSLLTLYARC--GLLHRAQRVFDEMPHPSTVSWTALITAYM 195

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +     A+        +G  P+++T   +L +CA+++ ++ G+ +     + G+    F
Sbjct: 196 DAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVF 255

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V T+ +++Y + GE+  AR VF+K   +DAV++ A++ GYAS G+  +A  LF  + ++ 
Sbjct: 256 VATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLF--LAMQA 313

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           E   P+   V   LSAC  +G+L+LG     +++      N  +  ALIDMY+KCG   +
Sbjct: 314 EGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAE 373

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A  +F+ + K+D+I WN MI G   T   K A  L  QM +S ++ ND TF+ +L +C +
Sbjct: 374 AWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTH 433

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WN 405
            G +  G+     + K +     +  +  ++D+ ++ G ++ A Q+ D M     A    
Sbjct: 434 TGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILG 493

Query: 406 AMISGLAMHGKADKALSLFSRMI 428
           A++ G  +H  A+ A  + +++I
Sbjct: 494 ALLGGCKIHRNAELAEHVLTQLI 516


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 266/676 (39%), Positives = 403/676 (59%), Gaps = 8/676 (1%)

Query: 35  ALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
            +L  C N +N+KQ   +HS IIK G    +F    L+++   S  G    A+ VF+TI+
Sbjct: 319 TVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDM--YSKCGLAIDAIGVFKTIK 376

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           +P+ V+W+ +I           +IK +  M L   +PN YT   +L +      +  G+ 
Sbjct: 377 KPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQS 436

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IHA V K G E+D  V  +L+ MY +NG +     ++     RD +S+ A ++G    G 
Sbjct: 437 IHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGM 496

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
            D    +F  M   EE F+PN  T +++L +C+ +  +  G  V + I  + L  N  V 
Sbjct: 497 YDRPLTIFYHM--LEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVC 554

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
            ALIDMY+KC  L  A   F  +  RD+ +W V+I  Y  T+  ++AL  FRQM Q  ++
Sbjct: 555 TALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVK 614

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           PN+ T    L  C+ L +L+ G+ +H+ + K+   ++++ + ++L+DMYAKCG ++ AE 
Sbjct: 615 PNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGH-VSDMFVGSALVDMYAKCGCMEEAEA 673

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           +F+ +  +   +WN +I G A +G+ +KAL+ F  M+ EG+ PD +TF G+LSAC+H GL
Sbjct: 674 LFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGL 733

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           ++ G+++FN+M +D+ ISP + H  CMVD+LGR G FDE E  ++ M++  +A IW ++L
Sbjct: 734 VEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVL 793

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
           GA ++H  L LGE  A  L EL+PE   +Y+LLSN++A  GRWDDV  +R+ ++ KG+KK
Sbjct: 794 GASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKK 853

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
            PGCS +E    VH F+  D  HPQ + I+  LDE+D  L    +VP T  VL+++ E  
Sbjct: 854 EPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETE 913

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           K+  L  HSE+LA+ + LIST     IRI KNLR+C +CH   K IS I N+EI+ RD  
Sbjct: 914 KKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVR 973

Query: 692 RFHHFKDGNCSCNDYW 707
           RFHHFK+G CSCND+W
Sbjct: 974 RFHHFKNGACSCNDFW 989



 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 147/478 (30%), Positives = 255/478 (53%), Gaps = 7/478 (1%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L   S C  +   KQ+H+Q  K GL    F  S L+++ A    G++  A  +F  + E 
Sbjct: 220 LKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYA--KCGEIELASKMFIGMPEQ 277

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           N V WN ++ G++        +K +  M+      N +T   +LK CA    + +G+ IH
Sbjct: 278 NDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIH 337

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
           + ++K G E + F+   L++MY++ G    A  VF      D V ++ALIT    +G  +
Sbjct: 338 SLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSE 397

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           ++ +LF  M  R  + +PN+ T+ ++LSA  + G+L+ G  + + +  +G  +++ V+NA
Sbjct: 398 ESIKLFHLM--RLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNA 455

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           L+ MY K G +     L+ES+  RD+ISWN  + G      Y   L +F  ML+    PN
Sbjct: 456 LVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPN 515

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
             TF+S+L +C+ L  +  G+ +HA+I KN    NN  + T+LIDMYAKC  ++ A+  F
Sbjct: 516 MYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNF-VCTALIDMYAKCMYLEDADVAF 574

Query: 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLD 453
           + +  + L +W  +I+  A   + +KAL+ F +M  EG++P++ T  G LS C+    L+
Sbjct: 575 NRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLE 634

Query: 454 IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
            G+Q  + + +   +S        +VD+  + G  +EAEAL + + ++ D   W +++
Sbjct: 635 GGQQLHSMVFKSGHVSDMFVG-SALVDMYAKCGCMEEAEALFEAL-IRRDTIAWNTII 690



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 146/516 (28%), Positives = 260/516 (50%), Gaps = 19/516 (3%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ++L +C + +++   K +H  I+K  ++        L+ + A   +   +YA LV   + 
Sbjct: 117 SMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYS--AYARLVLAKMP 174

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           + + V W  +I+G         +I  +  M   G +PN +T    LK+C+   A+  GKQ
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +HA   KLGL  D FV ++L+++YA+ GE+E A  +F     ++ V++  L+ GYA RG 
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
           +    +LF  M   E +   NE T+ TVL  CA+  +L+ G  + SLI   G   N  + 
Sbjct: 295 VTGVLKLFCSM--MELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIG 352

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
             L+DMYSKCG  + A  +F++I+K D++ W+ +I         +E++ LF  M   +  
Sbjct: 353 CGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTL 412

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           PN  T  S+L A    G L  G+ IHA + K +    +V++  +L+ MY K G +    +
Sbjct: 413 PNQYTICSLLSAATNTGNLQYGQSIHACVWK-YGFETDVAVSNALVTMYMKNGCVHDGTK 471

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           +++ M  + L SWNA +SGL   G  D+ L++F  M+ EG  P+  TF+ +L +C+    
Sbjct: 472 LYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFD 531

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGC--MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
           +  GRQ    +I++        ++ C  ++D+  +    ++A+     + ++ D   WT 
Sbjct: 532 VHYGRQVHAHIIKN---QLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVR-DLFTWTV 587

Query: 510 LLGACRVHGRLELGESVAKHLLELEPE--NPGAYVL 543
           ++     + +   GE    +  +++ E   P  + L
Sbjct: 588 IITN---YAQTNQGEKALNYFRQMQQEGVKPNEFTL 620



 Score =  185 bits (469), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 127/411 (30%), Positives = 212/411 (51%), Gaps = 8/411 (1%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           +L+ CA   ++   K IH  ++K  +  D  +  SL+N+YA+      ARLV  K   RD
Sbjct: 118 MLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRD 177

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
            VS+TALI G  + G+ +D+  LF EM  + E  +PNE T+ T L AC+   +L+LG  +
Sbjct: 178 VVSWTALIQGLVAEGFANDSIYLFQEM--QNEGIMPNEFTLATGLKACSLCMALDLGKQM 235

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
            +     GL  +L V +AL+D+Y+KCG++  A  +F  + +++ ++WNV++ GY    D 
Sbjct: 236 HAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDV 295

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
              L LF  M++ +++ N+ T  +VL  CA    L  G+ IH+ I K   + N   +   
Sbjct: 296 TGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEF-IGCG 354

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM-IGEGLQP 434
           L+DMY+KCG    A  VF  +    +  W+A+I+ L   G++++++ LF  M +G+ L P
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTL-P 413

Query: 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494
           +  T   +LSA  + G L  G Q  +A +  Y     +     +V +  + G   +   L
Sbjct: 414 NQYTICSLLSAATNTGNLQYG-QSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKL 472

Query: 495 LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545
            ++M +  D   W + L      G  +   ++  H+LE E   P  Y  +S
Sbjct: 473 YESM-VDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLE-EGFIPNMYTFIS 521


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 267/662 (40%), Positives = 403/662 (60%), Gaps = 6/662 (0%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +Q+H  I+K+G        + L+     +   D   A  VF+ + E + + WN+II G+ 
Sbjct: 215 EQLHGFILKSGFGERNSVGNSLVAFYLKNQRVD--SARKVFDEMTERDVISWNSIINGYV 272

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +      +  +V+M++SG   +  T   +   CA    IS G+ +H+  +K     +  
Sbjct: 273 SNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDR 332

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
              +L++MY++ G+L+SA+ VF + S R  VSYT++I GYA  G   +A +LF+EM   E
Sbjct: 333 FCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME--E 390

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           E   P+  TV  VL+ CA    L+ G  V   I+ + LG ++ V+NAL+DMY+KCG + +
Sbjct: 391 EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQE 450

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN-IEPNDVTFLSVLPACA 345
           A  +F  +  +D+ISWN +IGGY+      EAL LF  +L+     P++ T   VLPACA
Sbjct: 451 AELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACA 510

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
            L A D G+ IH YI +N    ++  +  SL+DMYAKCG +  A  +FD +  K L SW 
Sbjct: 511 SLSAFDKGREIHGYIMRNGY-FSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWT 569

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
            MI+G  MHG   +A++LF++M   G++ D+I+FV +L AC+H+GL+D G ++FN M  +
Sbjct: 570 VMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHE 629

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
            KI P ++HY C+VD+L R G   +A   ++ M + PDA IW +LL  CR+H  ++L E 
Sbjct: 630 CKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEK 689

Query: 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVH 585
           VA+ + ELEPEN G YVL++N+YA A +W+ V  +R R+  +G++K PGCS IE+   V+
Sbjct: 690 VAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVN 749

Query: 586 EFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAI 645
            F+ GD  +P++++I   L ++ A + + G+ P T   L D +E  KE AL  HSEKLA+
Sbjct: 750 IFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAM 809

Query: 646 AYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCND 705
           A G+IS+  G  IR+ KNLRVCG+CH   K +SK+  REI+ RD NRFH FKDG+CSC  
Sbjct: 810 ALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRG 869

Query: 706 YW 707
           +W
Sbjct: 870 FW 871



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 140/442 (31%), Positives = 228/442 (51%), Gaps = 6/442 (1%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           GDL  A  VF+ ++    + WN ++   + S     +I  + +M+ SG   ++YTF  + 
Sbjct: 143 GDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVS 202

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
           KS + + ++  G+Q+H  +LK G      V  SL+  Y +N  ++SAR VF++ + RD +
Sbjct: 203 KSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVI 262

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           S+ ++I GY S G  +    +F +M +       + +T+V+V + CA    + LG  V S
Sbjct: 263 SWNSIINGYVSNGLAEKGLSVFVQMLV--SGIEIDLATIVSVFAGCADSRLISLGRAVHS 320

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
           +             N L+DMYSKCGDL  A+ +F  +  R V+S+  MI GY       E
Sbjct: 321 IGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGE 380

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           A+ LF +M +  I P+  T  +VL  CA    LD GK +H +I +N     ++ +  +L+
Sbjct: 381 AVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGF-DIFVSNALM 439

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG-LQPDD 436
           DMYAKCG+++ AE VF  M  K + SWN +I G + +  A++ALSLF+ ++ E    PD+
Sbjct: 440 DMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDE 499

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
            T   VL AC      D GR+    ++++   S +      +VD+  + G    A  L  
Sbjct: 500 RTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR-HVANSLVDMYAKCGALLLAHMLFD 558

Query: 497 TMEMKPDAAIWTSLLGACRVHG 518
            +  K D   WT ++    +HG
Sbjct: 559 DIASK-DLVSWTVMIAGYGMHG 579



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 110/382 (28%), Positives = 187/382 (48%), Gaps = 5/382 (1%)

Query: 132 TFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKS 191
           T   +L+ CA   ++ +GK++   +   G   D  + + L  MY   G+L+ A  VF++ 
Sbjct: 96  TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEV 155

Query: 192 SLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL 251
            +  A+ +  L+   A  G    +  LF +M         +  T   V  + + + S+  
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMM--SSGVEMDSYTFSCVSKSFSSLRSVHG 213

Query: 252 GNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311
           G  +   I   G G    V N+L+  Y K   +  AR +F+ + +RDVISWN +I GY  
Sbjct: 214 GEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVS 273

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
               ++ L +F QML S IE +  T +SV   CA    + LG+ +H+   K      +  
Sbjct: 274 NGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED-R 332

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
              +L+DMY+KCG++ +A+ VF  M  +++ S+ +MI+G A  G A +A+ LF  M  EG
Sbjct: 333 FCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 392

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
           + PD  T   VL+ C    LLD G++  +  I++  +   +     ++D+  + G   EA
Sbjct: 393 ISPDVYTVTAVLNCCARYRLLDEGKR-VHEWIKENDLGFDIFVSNALMDMYAKCGSMQEA 451

Query: 492 EALLKTMEMKPDAAIWTSLLGA 513
           E +   M +K D   W +++G 
Sbjct: 452 ELVFSEMRVK-DIISWNTIIGG 472



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 128/489 (26%), Positives = 220/489 (44%), Gaps = 74/489 (15%)

Query: 186 LVFNKSSLRDAVSYTALITGYASRGYLDDARQL--FDEMPIREENFVP----------NE 233
           ++FN++SLR        IT +  R   D   QL  F E     EN V           + 
Sbjct: 37  VIFNRASLRTVSDCVDSITTF-DRSVTDANTQLRRFCESG-NLENAVKLLCVSGKWDIDP 94

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
            T+ +VL  CA   SL+ G  V + I G+G   + ++ + L  MY+ CGDL +A  +F+ 
Sbjct: 95  RTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDE 154

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
           ++    + WN+++     + D+  ++ LF++M+ S +E +  TF  V  + + L ++  G
Sbjct: 155 VKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGG 214

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAM 413
           + +H +I K+     N S+  SL+  Y K   + +A +VFD M  + + SWN++I+G   
Sbjct: 215 EQLHGFILKSGFGERN-SVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVS 273

Query: 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR---------------QY 458
           +G A+K LS+F +M+  G++ D  T V V + C  + L+ +GR               ++
Sbjct: 274 NGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRF 333

Query: 459 FNAMIQDYKISPKLQ---------------HYGCMVDLLGRAGLFDEAEALLKTME---M 500
            N ++  Y     L                 Y  M+    R GL  EA  L + ME   +
Sbjct: 334 CNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGI 393

Query: 501 KPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSN----MYAGAGRWDD 556
            PD    T++L  C  +  L+ G+ V + + E    + G  + +SN    MYA  G   +
Sbjct: 394 SPDVYTVTAVLNCCARYRLLDEGKRVHEWIKE---NDLGFDIFVSNALMDMYAKCGSMQE 450

Query: 557 VATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIY--EMLDEIDALLEKS 614
              + + +  K +        I   +++  +         SK+ Y  E L   + LLE+ 
Sbjct: 451 AELVFSEMRVKDI--------ISWNTIIGGY---------SKNCYANEALSLFNLLLEEK 493

Query: 615 GFVPDTSEV 623
            F PD   V
Sbjct: 494 RFSPDERTV 502


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 259/569 (45%), Positives = 365/569 (64%), Gaps = 15/569 (2%)

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF------NKSSLRDAVSYTALIT 204
           QIH+ +LKLGL  +P V T      +    +  A  V             DA  +  LI 
Sbjct: 140 QIHSLILKLGLHHNPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLIR 199

Query: 205 GYASRGYLD-DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG 263
            +A   +    A + ++ M  R     PN+ T   VL ACA M  LELG  V + +   G
Sbjct: 200 AFAQTTHSKPHALRFYNTM--RRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKFG 257

Query: 264 LGSNLHVTNALIDMYSKC-----GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
              + HV N L+ MY  C        V A+ +F+    +D ++W+ MIGGY    +   A
Sbjct: 258 FEEDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDESPVKDSVTWSAMIGGYARAGNSARA 317

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
           + LFR+M  + + P+++T +SVL ACA LGAL+LGKW+ +YI++ +  + +V L  +LID
Sbjct: 318 VTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNI-MRSVELCNALID 376

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
           M+AKCG++  A +VF  M  +T+ SW +MI GLAMHG+  +A+ +F  M+ +G+ PDD+ 
Sbjct: 377 MFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVA 436

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
           F+GVLSAC+H+GL+D G  YFN M   + I PK++HYGCMVD+L RAG  +EA   ++ M
Sbjct: 437 FIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAM 496

Query: 499 EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVA 558
            ++P+  IW S++ AC   G L+LGESVAK L+  EP +   YVLLSN+YA   RW+   
Sbjct: 497 PVEPNQVIWRSIVTACHARGELKLGESVAKELIRREPSHESNYVLLSNIYAKLLRWEKKT 556

Query: 559 TIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVP 618
            +R  ++ KGM+K+PG + IE+ + ++EF+ GDK H Q K IYEM++E+   ++++G+VP
Sbjct: 557 KVREMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSHDQYKEIYEMVEEMGREIKRAGYVP 616

Query: 619 DTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLIS 678
            TS+VL D+DEE KE AL  HSEKLAIA+ L+ST PGT IRIVKNLRVC +CHSATK IS
Sbjct: 617 TTSQVLLDIDEEDKEDALYRHSEKLAIAFALLSTPPGTPIRIVKNLRVCEDCHSATKFIS 676

Query: 679 KIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           K++NREI+ RDRNRFHHFK+G CSC D+W
Sbjct: 677 KVYNREIVVRDRNRFHHFKNGLCSCGDFW 705



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/427 (31%), Positives = 233/427 (54%), Gaps = 19/427 (4%)

Query: 15  LHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAV 74
           +H PP +    + +  Q  L+LL+ C  +    Q+HS I+K GLH+    L+K       
Sbjct: 109 VHLPPHTTK--RRVAEQTILSLLTTCDTLTTFTQIHSLILKLGLHHNPLVLTKF--AATS 164

Query: 75  SPFGDLSYALLVF----ETIREPNQ--VIWNNIIRGHSLSS-SPVVAIKFYVRMILSGFV 127
           S F  + YA  V     +T   P+    ++N +IR  + ++ S   A++FY  M      
Sbjct: 165 SHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLIRAFAQTTHSKPHALRFYNTMRRHAVS 224

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMY---AQNGELE-- 182
           PN +TFPF+LK+CA +  +  G  +HA ++K G E DP V  +L++MY    Q+G     
Sbjct: 225 PNKFTFPFVLKACAGMMRLELGGAVHASMVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPV 284

Query: 183 SARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSA 242
           SA+ VF++S ++D+V+++A+I GYA  G    A  LF EM +      P+E T+V+VLSA
Sbjct: 285 SAKKVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQV--TGVCPDEITMVSVLSA 342

Query: 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
           CA +G+LELG W+ S IE   +  ++ + NALIDM++KCGD+ +A  +F  ++ R ++SW
Sbjct: 343 CADLGALELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSW 402

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
             MI G        EA+++F +M++  ++P+DV F+ VL AC++ G +D G +    ++ 
Sbjct: 403 TSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMEN 462

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKAL 421
               +  +  +  ++DM ++ G +  A +    M  +     W ++++     G+     
Sbjct: 463 MFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGE 522

Query: 422 SLFSRMI 428
           S+   +I
Sbjct: 523 SVAKELI 529


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 272/673 (40%), Positives = 403/673 (59%), Gaps = 39/673 (5%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGLHNTQFALS-KLIEICAVSPFGDLSYALLVFETIREPN 94
           +L +   ++ + ++HS+I+          L+ KL+   A S  G+ S A  +F+   E N
Sbjct: 44  ILDQYPGIKTLNKLHSKIVINEHLRIDPTLAIKLMR--AYSAQGETSVARYIFDRSLEKN 101

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
            V +N +IR +  ++  V A+  +  M+   F P+ YTFP +LK+C+ +  +  G Q+H 
Sbjct: 102 VVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHD 161

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
            ++K+GL+++ F+  +L+ MY + G L  AR V ++   RD VS+ +++ GYA  G  DD
Sbjct: 162 AIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDD 221

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274
           A                        L  C  M SL L          H  G+   ++  +
Sbjct: 222 A------------------------LEICKEMDSLNLN---------HDAGTMASLSPVV 248

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
              Y+   ++    ++FE + K+++ISWNVMI  Y + S   EA+ LF QM +  ++P+ 
Sbjct: 249 C--YTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDA 306

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           VT  S+LPAC  L AL LG+ +H YI+K + +  N+ L  +L+DMYAKCG ++ A  VFD
Sbjct: 307 VTIASLLPACGDLSALFLGRRLHKYIEKGNLR-PNLLLENALLDMYAKCGCLEEARDVFD 365

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
            M  + + SW +M+S     G+   A++LF++M+  G  PD I FV VLSAC+H GLLD 
Sbjct: 366 KMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQ 425

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
           GR YF  M + Y I P+++H+ CMVDL GRAG  +EA + +K M M+P+  +W +LL AC
Sbjct: 426 GRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSAC 485

Query: 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPG 574
           RVH ++++G   A  L +L P+  G YVLLSN+YA AG W DV  +R  +   G+KKVPG
Sbjct: 486 RVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPG 545

Query: 575 CSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEG 634
            S++E+   VH FL GD+ HPQ+K+IY  LD +   +++ G++P T   L+D++ E KE 
Sbjct: 546 ISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKEC 605

Query: 635 ALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFH 694
            L+ HSEKLAI + +++TK GT IRI KNLRVCG+CH A KLISKI +R II RD NRFH
Sbjct: 606 HLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFH 665

Query: 695 HFKDGNCSCNDYW 707
           HF +G CSC DYW
Sbjct: 666 HFSNGICSCGDYW 678


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  520 bits (1338), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 265/585 (45%), Positives = 362/585 (61%), Gaps = 12/585 (2%)

Query: 128 PNTYTFPFILKSCAKIS-AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARL 186
           P+  TFP  LKS +++   +  G+Q+HA  LKL   ++P V TSL+ +YA+ G L  A+ 
Sbjct: 68  PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQR 127

Query: 187 VFNKSSLRDAVSYTALITGYASRGYLDDA----RQLFDEMPIREENFVPNESTVVTVLSA 242
           VF++      VS+TALIT Y   G L +A    R  F           P+  T V VL+A
Sbjct: 128 VFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAF------ANGMRPDSFTAVRVLTA 181

Query: 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
           CA +  L  G  V    E  G+  ++ V  A +D+Y KCG++ KAR++F+ +  +D ++W
Sbjct: 182 CARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAW 241

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
             M+GGY      +EAL LF  M    + P+       L AC  LGALDLG+     +D 
Sbjct: 242 GAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDW 301

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALS 422
           + + L+N  L T+LIDMYAKCG+   A  VF  M  K +  WNAMI GL M G    A +
Sbjct: 302 D-EFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFT 360

Query: 423 LFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482
           L  +M   G++ +D TF+G+L +C H GL+  GR+YF+ M + Y ISP+++HYGC+VDLL
Sbjct: 361 LIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLL 420

Query: 483 GRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV 542
            RAGL  EA  L+  M M  +A I  +LLG C++H   EL E V   L+ LEP N G YV
Sbjct: 421 SRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYV 480

Query: 543 LLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYE 602
           +LSN+Y+  GRW+D A +R  + +KG++KVP CS +E    VHEF VGDK HP S  IY+
Sbjct: 481 MLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYK 540

Query: 603 MLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVK 662
            LDE+   ++  G+ P T  V++D+++E KE  L HHSEKLAIA+ L+ T PG TIR+ K
Sbjct: 541 KLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTK 600

Query: 663 NLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           NLRVC +CH+A KLIS+I +REII RD NRFH F+DG+CSCNDYW
Sbjct: 601 NLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/383 (28%), Positives = 199/383 (51%), Gaps = 5/383 (1%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +Q+H++ +K   H     L+ L+ + A    G L  A  VF+ +  P+ V W  +I  + 
Sbjct: 91  EQLHARSLKLPSHTNPHVLTSLLTLYARC--GLLHRAQRVFDEMPHPSTVSWTALITAYM 148

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +     A+        +G  P+++T   +L +CA+++ ++ G+ +     + G+    F
Sbjct: 149 DAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVF 208

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V T+ +++Y + GE+  AR VF+K   +DAV++ A++ GYAS G+  +A  LF  + ++ 
Sbjct: 209 VATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLF--LAMQA 266

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           E   P+   V   LSAC  +G+L+LG     +++      N  +  ALIDMY+KCG   +
Sbjct: 267 EGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAE 326

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A  +F+ + K+D+I WN MI G   T   K A  L  QM +S ++ ND TF+ +L +C +
Sbjct: 327 AWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTH 386

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WN 405
            G +  G+     + K +     +  +  ++D+ ++ G ++ A Q+ D M     A    
Sbjct: 387 TGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILG 446

Query: 406 AMISGLAMHGKADKALSLFSRMI 428
           A++ G  +H  A+ A  + +++I
Sbjct: 447 ALLGGCKIHRNAELAEHVLTQLI 469


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  520 bits (1338), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 262/577 (45%), Positives = 368/577 (63%), Gaps = 20/577 (3%)

Query: 53  IIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPV 112
           ++ TGL    FA S+LI  CA+S + DL Y   +    R PN   WN  IRG   S +P 
Sbjct: 1   MVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPR 60

Query: 113 VAIKFYVRMI-LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSL 171
            A+  Y R++   G  P+ YT+P + K+CA++S I  G +I  HVL LG +SD FV  ++
Sbjct: 61  EAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAV 120

Query: 172 INMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVP 231
           I++    G+L+ AR +F+KS +RD VS+ ++I GY  RG+  +A   + EM +  E   P
Sbjct: 121 IHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKV--EGIKP 178

Query: 232 NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLF 291
           +E T++ V+S+CA +  L+LG      IE +GL   + + NAL+DMY KCG+L  AR LF
Sbjct: 179 DEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLF 238

Query: 292 ESIEKR----------------DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV 335
           +S+  +                DV+ WN MIGGY H +  KEAL LF +M   NI P++V
Sbjct: 239 DSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEV 298

Query: 336 TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
           T +S L AC+ LGALD+G WIH YI+K+   LN V+L T+LIDMYAKCG I  A QVF  
Sbjct: 299 TMVSCLSACSQLGALDVGIWIHHYIEKHELSLN-VALGTALIDMYAKCGKITKAIQVFQE 357

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
           +  +   +W A+ISGLA+HG A  A++ FS MI   + PD++TF+G+LSAC H GL++ G
Sbjct: 358 LPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEG 417

Query: 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACR 515
           R+YF+ M   + +SPKL+HY CMVDLLGRAGL +EAE L+K+M ++ DA +W +L  ACR
Sbjct: 418 RKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACR 477

Query: 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGC 575
           +HG + +GE  A  LL+++P + G YVLL+NMY  A  W +    R  +  +G++K PGC
Sbjct: 478 IHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKXRKLMRQRGVEKTPGC 537

Query: 576 SSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE 612
           SSIEV  +V+EF+V DK HPQS+ IYE L ++   LE
Sbjct: 538 SSIEVNGIVYEFIVRDKSHPQSEQIYECLIQLTRQLE 574


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 267/679 (39%), Positives = 394/679 (58%), Gaps = 75/679 (11%)

Query: 31  QPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
            P++ALL      + ++Q+H+++   G       +   ++  A+S    L YA  + +  
Sbjct: 7   HPAIALLDSGITFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRS 66

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG--FVPNTYTFPFILKSCAKISAISE 148
            +P     N++IR H  S  P  +  FY R++ SG    P+ YT  F++++C  +     
Sbjct: 67  EKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRET 126

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           G Q+H   ++ G ++DP V T LI++Y                               A 
Sbjct: 127 GLQVHGMTIRRGFDNDPHVQTGLISLY-------------------------------AE 155

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
            G LD   ++F+ +P       P+      +++ACA                        
Sbjct: 156 LGCLDSCHKVFNSIP------CPDFVCRTAMVTACA------------------------ 185

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
                      +CGD+V AR LFE + +RD I+WN MI GY    + +EAL +F  M   
Sbjct: 186 -----------RCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLE 234

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            ++ N V  +SVL AC  LGALD G+W H+YI++N  K+  V L T+L+D+YAKCG+++ 
Sbjct: 235 GVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKIT-VRLATTLVDLYAKCGDMEK 293

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A +VF GM  K + +W++ ++GLAM+G  +K L LFS M  +G+ P+ +TFV VL  C+ 
Sbjct: 294 AMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSV 353

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
            G +D G+++F++M  ++ I P+L+HYGC+VDL  RAG  ++A ++++ M MKP AA+W+
Sbjct: 354 VGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWS 413

Query: 509 SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568
           SLL A R++  LELG   +K +LELE  N GAYVLLSN+YA +  WD+V+ +R  +  KG
Sbjct: 414 SLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKG 473

Query: 569 MKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
           ++K PGCS +EV   VHEF VGDK HP+   I  +  +I   L  +G+  DT+ V++D+D
Sbjct: 474 VRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDID 533

Query: 629 EEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIAR 688
           EE KE AL  HSEK AIA+G++S K    IRIVKNLRVCG+CH  + +ISKIFNREII R
Sbjct: 534 EEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVR 593

Query: 689 DRNRFHHFKDGNCSCNDYW 707
           DRNRFHHFKDG+CSCN +W
Sbjct: 594 DRNRFHHFKDGHCSCNGFW 612


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 267/662 (40%), Positives = 403/662 (60%), Gaps = 6/662 (0%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +Q+H  I+K+G        + L+     +   D   A  VF+ + E + + WN+II G+ 
Sbjct: 64  EQLHGFILKSGFGERNSVGNSLVAFYLKNQRVD--SARKVFDEMTERDVISWNSIINGYV 121

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +      +  +V+M++SG   +  T   +   CA    IS G+ +H+  +K     +  
Sbjct: 122 SNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDR 181

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
              +L++MY++ G+L+SA+ VF + S R  VSYT++I GYA  G   +A +LF+EM   E
Sbjct: 182 FCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME--E 239

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           E   P+  TV  VL+ CA    L+ G  V   I+ + LG ++ V+NAL+DMY+KCG + +
Sbjct: 240 EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQE 299

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN-IEPNDVTFLSVLPACA 345
           A  +F  +  +D+ISWN +IGGY+      EAL LF  +L+     P++ T   VLPACA
Sbjct: 300 AELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACA 359

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
            L A D G+ IH YI +N    ++  +  SL+DMYAKCG +  A  +FD +  K L SW 
Sbjct: 360 SLSAFDKGREIHGYIMRNGY-FSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWT 418

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
            MI+G  MHG   +A++LF++M   G++ D+I+FV +L AC+H+GL+D G ++FN M  +
Sbjct: 419 VMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHE 478

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
            KI P ++HY C+VD+L R G   +A   ++ M + PDA IW +LL  CR+H  ++L E 
Sbjct: 479 CKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEK 538

Query: 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVH 585
           VA+ + ELEPEN G YVL++N+YA A +W+ V  +R R+  +G++K PGCS IE+   V+
Sbjct: 539 VAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVN 598

Query: 586 EFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAI 645
            F+ GD  +P++++I   L ++ A + + G+ P T   L D +E  KE AL  HSEKLA+
Sbjct: 599 IFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAM 658

Query: 646 AYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCND 705
           A G+IS+  G  IR+ KNLRVCG+CH   K +SK+  REI+ RD NRFH FKDG+CSC  
Sbjct: 659 ALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRG 718

Query: 706 YW 707
           +W
Sbjct: 719 FW 720



 Score =  219 bits (557), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 135/433 (31%), Positives = 223/433 (51%), Gaps = 6/433 (1%)

Query: 87  FETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAI 146
           F+ ++    + WN ++   + S     +I  + +M+ SG   ++YTF  + KS + + ++
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 147 SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGY 206
             G+Q+H  +LK G      V  SL+  Y +N  ++SAR VF++ + RD +S+ ++I GY
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS 266
            S G  +    +F +M +       + +T+V+V + CA    + LG  V S+        
Sbjct: 121 VSNGLAEKGLSVFVQMLV--SGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSR 178

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML 326
                N L+DMYSKCGDL  A+ +F  +  R V+S+  MI GY       EA+ LF +M 
Sbjct: 179 EDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME 238

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
           +  I P+  T  +VL  CA    LD GK +H +I +N     ++ +  +L+DMYAKCG++
Sbjct: 239 EEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGF-DIFVSNALMDMYAKCGSM 297

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG-LQPDDITFVGVLSA 445
           + AE VF  M  K + SWN +I G + +  A++ALSLF+ ++ E    PD+ T   VL A
Sbjct: 298 QEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPA 357

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           C      D GR+    ++++   S +      +VD+  + G    A  L   +  K D  
Sbjct: 358 CASLSAFDKGREIHGYIMRNGYFSDR-HVANSLVDMYAKCGALLLAHMLFDDIASK-DLV 415

Query: 506 IWTSLLGACRVHG 518
            WT ++    +HG
Sbjct: 416 SWTVMIAGYGMHG 428


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 252/580 (43%), Positives = 379/580 (65%), Gaps = 4/580 (0%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P+   +  +LK C ++  + EGK +H HVL    + D  +  SL+ MYA+ G LE AR +
Sbjct: 72  PDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRL 131

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
           F++   RD VS+T++ITGYA      DA  LF  M    +   PNE T+ +++  C +M 
Sbjct: 132 FDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRM--LSDGAEPNEFTLSSLVKCCGYMA 189

Query: 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG 307
           S   G  + +    +G  SN+ V ++L+DMY++CG L +A  +F+ +  ++ +SWN +I 
Sbjct: 190 SYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIA 249

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
           GY    + +EAL LF +M +    P + T+ ++L +C+ +G L+ GKW+HA++ K+ QKL
Sbjct: 250 GYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKL 309

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
               +  +L+ MYAK G+I+ AE+VFD +    + S N+M+ G A HG   +A   F  M
Sbjct: 310 VGY-VGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEM 368

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
           I  G++P+DITF+ VL+AC+HA LLD G+ YF  M + Y I PK+ HY  +VDLLGRAGL
Sbjct: 369 IRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLM-RKYNIEPKVSHYATIVDLLGRAGL 427

Query: 488 FDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547
            D+A++ ++ M ++P  AIW +LLGA ++H   E+G   A+ + EL+P  PG + LL+N+
Sbjct: 428 LDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANI 487

Query: 548 YAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEI 607
           YA AGRW+DVA +R  + D G+KK P CS +EV + VH F+  D  HPQ + I++M +++
Sbjct: 488 YASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKL 547

Query: 608 DALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVC 667
           +  +++ G+VPDTS VL  +D++ KE  L +HSEKLA+++ L++T PG+TIRI+KN+RVC
Sbjct: 548 NQKIKEIGYVPDTSHVLLFVDQQEKELNLQYHSEKLALSFALLNTPPGSTIRIMKNIRVC 607

Query: 668 GNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           G+CHSA K +S +  REII RD NRFHHF DG CSC DYW
Sbjct: 608 GDCHSAIKYVSLVVKREIIVRDTNRFHHFCDGFCSCGDYW 647



 Score =  203 bits (517), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 126/384 (32%), Positives = 208/384 (54%), Gaps = 9/384 (2%)

Query: 35  ALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
            LL +CT +  +K+   VH  ++ +   +     + L+ + A    G L  A  +F+ + 
Sbjct: 79  TLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARC--GSLEGARRLFDEMP 136

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             + V W ++I G++ +     A+  + RM+  G  PN +T   ++K C  +++ + G+Q
Sbjct: 137 HRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQ 196

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IHA   K G  S+ FV +SL++MYA+ G L  A LVF+K   ++ VS+ ALI GYA +G 
Sbjct: 197 IHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGE 256

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
            ++A  LF  M  + E + P E T   +LS+C+ MG LE G W+ + +         +V 
Sbjct: 257 GEEALALFVRM--QREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVG 314

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N L+ MY+K G +  A  +F+ + K DV+S N M+ GY      KEA   F +M++  IE
Sbjct: 315 NTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIE 374

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           PND+TFLSVL AC++   LD GK     + K + +   VS + +++D+  + G +  A+ 
Sbjct: 375 PNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIE-PKVSHYATIVDLLGRAGLLDQAKS 433

Query: 392 VFDGMGYK-TLASWNAMISGLAMH 414
             + M  + T+A W A++    MH
Sbjct: 434 FIEEMPIEPTVAIWGALLGASKMH 457



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 149/284 (52%), Gaps = 9/284 (3%)

Query: 30  NQPSLALLSKCTNMQNI----KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALL 85
           N+ +L+ L KC          +Q+H+   K G H+  F  S L+++ A    G L  A+L
Sbjct: 174 NEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARC--GYLGEAML 231

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145
           VF+ +   N+V WN +I G++       A+  +VRM   G+ P  +T+  +L SC+ +  
Sbjct: 232 VFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGC 291

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
           + +GK +HAH++K   +   +V  +L++MYA++G +  A  VF+K    D VS  +++ G
Sbjct: 292 LEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIG 351

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           YA  G   +A Q FDEM IR     PN+ T ++VL+AC+H   L+ G     L+  + + 
Sbjct: 352 YAQHGLGKEAAQQFDEM-IR-FGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIE 409

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVIS-WNVMIGG 308
             +     ++D+  + G L +A+   E +     ++ W  ++G 
Sbjct: 410 PKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGA 453


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 272/673 (40%), Positives = 403/673 (59%), Gaps = 39/673 (5%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGLHNTQFALS-KLIEICAVSPFGDLSYALLVFETIREPN 94
           +L +   ++ + ++HS+I+          L+ KL+   A S  G+ S A  +F+   E N
Sbjct: 44  ILDQYPGIKTLNKLHSKIVINEHLRIDPTLAIKLMR--AYSAQGETSVARYIFDRSLEKN 101

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
            V +N +IR +  ++  V A+  +  M+   F P+ YTFP +LK+C+ +  +  G Q+H 
Sbjct: 102 VVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHD 161

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
            ++K+GL+++ F+  +L+ MY + G L  AR V ++   RD VS+ +++ GYA  G  DD
Sbjct: 162 AIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDD 221

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274
           A                        L  C  M SL L          H  G+   ++  +
Sbjct: 222 A------------------------LEICKEMDSLNLN---------HDAGTMASLSPVV 248

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
              Y+   ++    ++FE + K+++ISWNVMI  Y + S   EA+ LF QM +  ++P+ 
Sbjct: 249 C--YTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDA 306

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           VT  S+LPAC  L AL LG+ +H YI+K + +  N+ L  +L+DMYAKCG ++ A  VFD
Sbjct: 307 VTIASLLPACGDLSALFLGRRLHKYIEKGNLQ-PNLLLENALLDMYAKCGCLEEARDVFD 365

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
            M  + + SW +M+S     G+   A++LF++M+  G  PD I FV VLSAC+H GLLD 
Sbjct: 366 KMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQ 425

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
           GR YF  M + Y I P+++H+ CMVDL GRAG  +EA + +K M M+P+  +W +LL AC
Sbjct: 426 GRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSAC 485

Query: 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPG 574
           RVH ++++G   A  L +L P+  G YVLLSN+YA AG W DV  +R  +   G+KKVPG
Sbjct: 486 RVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPG 545

Query: 575 CSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEG 634
            S++E+   VH FL GD+ HPQ+K+IY  LD +   +++ G++P T   L+D++ E KE 
Sbjct: 546 ISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKEC 605

Query: 635 ALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFH 694
            L+ HSEKLAI + +++TK GT IRI KNLRVCG+CH A KLISKI +R II RD NRFH
Sbjct: 606 HLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFH 665

Query: 695 HFKDGNCSCNDYW 707
           HF +G CSC DYW
Sbjct: 666 HFSNGICSCGDYW 678


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 267/617 (43%), Positives = 388/617 (62%), Gaps = 8/617 (1%)

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
           WN++I   + S     A+  +  M      P   +FP  +K+C+ +  I  GKQ H    
Sbjct: 44  WNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAF 103

Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ 217
             G +SD FV ++LI MY+  G+LE AR VF++   RD VS+T++I GY   G   DA  
Sbjct: 104 VFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVS 163

Query: 218 LFDEMPIREEN----FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           LF ++ + E +       +   +V+V+SAC+ + +  L   + S +   G    + V N 
Sbjct: 164 LFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNT 223

Query: 274 LIDMYSKCGD--LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           L+D Y+K G+  +  AR +F+ I  +D +S+N ++  Y  +    EA  +FR+++++ + 
Sbjct: 224 LLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVV 283

Query: 332 P-NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
             N +T  +VL A ++ GAL +GK IH  + +   + ++V + TS+IDMY KCG ++ A 
Sbjct: 284 TFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLE-DDVIVGTSIIDMYCKCGRVETAR 342

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           + FD M  K + SW AMI+G  MHG A KAL LF  MI  G++P+ ITFV VL+AC+HAG
Sbjct: 343 KAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAG 402

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L   G ++FNAM   + + P L+HYGCMVDLLGRAG   +A  L++ M+MKPD+ IW+SL
Sbjct: 403 LHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSL 462

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           L ACR+H  +EL E     L EL+  N G Y+LLS++YA AGRW DV  +R  + ++G+ 
Sbjct: 463 LAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLV 522

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           K PG S +E+   VH FL+GD+ HPQ + IYE L E++  L ++G+V +TS V +D+DEE
Sbjct: 523 KPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEE 582

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KE  L  HSEKLAIA+G+++T PG+T+ +VKNLRVC +CH+  KLISKI +RE + RD 
Sbjct: 583 EKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDA 642

Query: 691 NRFHHFKDGNCSCNDYW 707
            RFHHFKDG CSC DYW
Sbjct: 643 KRFHHFKDGGCSCGDYW 659



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 201/421 (47%), Gaps = 48/421 (11%)

Query: 37  LSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           +  C+++ +I   KQ H Q    G  +  F  S LI +   S  G L  A  VF+ I + 
Sbjct: 83  IKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVM--YSTCGKLEDARKVFDEIPKR 140

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMIL------SGFVPNTYTFPFILKSCAKISAIS 147
           + V W ++IRG+ L+ + + A+  +  +++           ++     ++ +C+++ A  
Sbjct: 141 DIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKG 200

Query: 148 EGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE--LESARLVFNKSSLRDAVSYTALITG 205
             + IH+ V+K G +    V  +L++ YA+ GE  +  AR +F++   +D VSY ++++ 
Sbjct: 201 LTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSV 260

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           YA  G  ++A ++F  + ++ +    N  T+ TVL A +H G+L +G  +   +   GL 
Sbjct: 261 YAQSGMSNEAFEVFRRL-VKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLE 319

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
            ++ V  ++IDMY KCG +  AR  F+ ++ ++V SW  MI GY       +AL LF  M
Sbjct: 320 DDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAM 379

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
           + S + PN +TF+SVL AC++ G                    +V  W     M  + G 
Sbjct: 380 IDSGVRPNYITFVSVLAACSHAGL-------------------HVEGWRWFNAMKGRFGV 420

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
               E             +  M+  L   G   KA  L  RM    ++PD I +  +L+A
Sbjct: 421 EPGLEH------------YGCMVDLLGRAGFLQKAYDLIQRM---KMKPDSIIWSSLLAA 465

Query: 446 C 446
           C
Sbjct: 466 C 466



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 150/293 (51%), Gaps = 8/293 (2%)

Query: 22  DPPYKLLQNQPSLALLSKCTNMQN---IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFG 78
           D     L +   ++++S C+ +      + +HS +IK G        + L++  A    G
Sbjct: 175 DDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEG 234

Query: 79  DLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVP-NTYTFPFIL 137
            ++ A  +F+ I + ++V +N+I+  ++ S     A + + R++ +  V  N  T   +L
Sbjct: 235 GVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVL 294

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
            + +   A+  GK IH  V+++GLE D  V TS+I+MY + G +E+AR  F++   ++  
Sbjct: 295 LAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVR 354

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG-SLELGNWVC 256
           S+TA+I GY   G+   A +LF  M   +    PN  T V+VL+AC+H G  +E   W  
Sbjct: 355 SWTAMIAGYGMHGHAAKALELFPAMI--DSGVRPNYITFVSVLAACSHAGLHVEGWRWFN 412

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGG 308
           ++    G+   L     ++D+  + G L KA DL + ++ K D I W+ ++  
Sbjct: 413 AMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAA 465



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 150/329 (45%), Gaps = 62/329 (18%)

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
           ++K DV SWN +I     + D  EAL+ F  M + ++ P   +F   + AC+ L  +  G
Sbjct: 36  VDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSG 95

Query: 354 KWIH--AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGL 411
           K  H  A++   +Q  +++ + ++LI MY+ CG ++ A +VFD +  + + SW +MI G 
Sbjct: 96  KQTHQQAFV-FGYQ--SDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGY 152

Query: 412 AMHGKADKALSLFSRMIGEGLQPDDITF------VGVLSACNHA---------------- 449
            ++G A  A+SLF  ++ +    DD  F      V V+SAC+                  
Sbjct: 153 DLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKR 212

Query: 450 ----------GLLD-----------IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488
                      LLD           + R+ F+ ++   ++S     Y  ++ +  ++G+ 
Sbjct: 213 GFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVS-----YNSIMSVYAQSGMS 267

Query: 489 DEA----EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP---GAY 541
           +EA      L+K   +  +A   +++L A    G L +G+ +   ++ +  E+    G  
Sbjct: 268 NEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTS 327

Query: 542 VLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           ++  +MY   GR +       R+ +K ++
Sbjct: 328 II--DMYCKCGRVETARKAFDRMKNKNVR 354


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 276/624 (44%), Positives = 386/624 (61%), Gaps = 89/624 (14%)

Query: 97  IWNNIIRG--HSLSS----SPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
           +WN IIR   H++SS    SP   I  Y+RM      P+ +TFPF+L S      +  G+
Sbjct: 26  LWNIIIRAIVHNVSSPQRHSP---ISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQ 82

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           + HA +L  GL+ DPFV TSL+NMY+                               S G
Sbjct: 83  RTHAQILLFGLDKDPFVRTSLLNMYS-------------------------------SCG 111

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
            L  A+++FD+                         GS +L  W                
Sbjct: 112 DLRSAQRVFDDS------------------------GSKDLPAW---------------- 131

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML---- 326
            N++++ Y+K G +  AR LF+ + +R+VISW+ +I GY     YKEAL LFR+M     
Sbjct: 132 -NSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKP 190

Query: 327 -QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
            ++ + PN+ T  +VL AC  LGAL+ GKW+HAYIDK H +++ + L T+LIDMYAKCG+
Sbjct: 191 NEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEID-IVLGTALIDMYAKCGS 249

Query: 386 IKAAEQVFDGMGYKT-LASWNAMISGLAMHGKADKALSLFSRMI-GEGLQPDDITFVGVL 443
           ++ A++VF+ +G K  + +++AMI  LAM+G  D+   LFS M   + + P+ +TFVG+L
Sbjct: 250 LERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGIL 309

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
            AC H GL++ G+ YF  MI+++ I+P +QHYGCMVDL GR+GL  EAE+ + +M M+PD
Sbjct: 310 GACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPD 369

Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563
             IW SLL   R+ G ++  E   K L+EL+P N GAYVLLSN+YA  GRW +V  IR  
Sbjct: 370 VLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHE 429

Query: 564 LNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEV 623
           +  KG+ KVPGCS +EV  VVHEF+VGD+   +S+ IY MLDEI   L ++G+V DT EV
Sbjct: 430 MEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEV 489

Query: 624 LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNR 683
           L D++E+ KE ALS+HSEKLAIA+ L+ T+PGT +RI+KNLR+CG+CH   K+ISK+F+R
Sbjct: 490 LLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSR 549

Query: 684 EIIARDRNRFHHFKDGNCSCNDYW 707
           EI+ RD NRFHHF+DG+CSC D+W
Sbjct: 550 EIVVRDCNRFHHFRDGSCSCRDFW 573



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 136/263 (51%), Gaps = 9/263 (3%)

Query: 73  AVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMIL----SGFV- 127
           A +  G +  A  +F+ + E N + W+ +I G+ +      A+  +  M L      FV 
Sbjct: 137 AYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVR 196

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           PN +T   +L +C ++ A+ +GK +HA++ K  +E D  + T+LI+MYA+ G LE A+ V
Sbjct: 197 PNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRV 256

Query: 188 FNK-SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHM 246
           FN   S +D  +Y+A+I   A  G  D+  QLF EM    +N  PN  T V +L AC H 
Sbjct: 257 FNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTT-SDNINPNSVTFVGILGACVHR 315

Query: 247 GSLELG-NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNV 304
           G +  G ++   +IE  G+  ++     ++D+Y + G + +A     S+  + DV+ W  
Sbjct: 316 GLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGS 375

Query: 305 MIGGYTHTSDYKEALMLFRQMLQ 327
           ++ G     D K      +++++
Sbjct: 376 LLSGSRMLGDIKTCEGALKRLIE 398


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 270/672 (40%), Positives = 395/672 (58%), Gaps = 75/672 (11%)

Query: 38  SKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGD-LSYALLVFETIREPNQV 96
           ++C+  + +KQ+H++++KTGL    +A++K +  C  S   D L YA +VF+    P+  
Sbjct: 51  TRCSKQEELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTF 110

Query: 97  IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHV 156
           +WN +IRG S S  P  ++  Y RM+      N YTFP +LK+C+ +SA+ E  QIHA +
Sbjct: 111 LWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQI 170

Query: 157 LKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDAR 216
            KLG E+D         +YA N                      +LI  YA+ G    A 
Sbjct: 171 TKLGYEND---------VYAVN----------------------SLINSYAATGNFKLAH 199

Query: 217 QLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALID 276
            LFD         +P    V                +W                 N++I 
Sbjct: 200 LLFDR--------IPKPDAV----------------SW-----------------NSVIK 218

Query: 277 MYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVT 336
            Y+K G +  A  LF  + +++ ISW  MI GY     +KEAL LF +M  S++EP++V+
Sbjct: 219 GYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVS 278

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
             + L ACA LGAL+ GKWIH+Y+ K   ++++V L   LIDMYAKCG++  A +VF  +
Sbjct: 279 LANALSACAQLGALEQGKWIHSYLTKTRIRMDSV-LGCVLIDMYAKCGDMGEALEVFKNI 337

Query: 397 GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR 456
             K++ +W A+ISG A HG   +A+S F  M   G++P+ ITF  VL+AC++ GL++ G+
Sbjct: 338 QRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGK 397

Query: 457 QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRV 516
             F  M +DY + P ++HYGC+VDLL RAGL DEA+  ++ M +KP+A IW +LL ACR+
Sbjct: 398 LIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRI 457

Query: 517 HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCS 576
           H  +ELGE + + L+ ++P + G YV  +N++A   +WD  A  R  + ++G+ KVPGCS
Sbjct: 458 HKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCS 517

Query: 577 SIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPD-TSEVLYDMDEEWKEGA 635
           +I +    HEFL GD+ HP+ + I      +   LE++G+VP+    +L  +D++ +E  
Sbjct: 518 TISLEGTTHEFLAGDRSHPEIEKIQSKWKIMRRKLEENGYVPELEDMLLDLVDDDERETI 577

Query: 636 LSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHH 695
           +  HSEKLAI YGLI TKPGTTIRI+KNLRVC +CH  TKLISKI+ R+I+ RDR RFHH
Sbjct: 578 VHQHSEKLAITYGLIKTKPGTTIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHH 637

Query: 696 FKDGNCSCNDYW 707
           F+DG CSC DYW
Sbjct: 638 FRDGKCSCGDYW 649


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 264/676 (39%), Positives = 404/676 (59%), Gaps = 44/676 (6%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           LAL SKC +++ +KQ+ + I KT L++      KL+  CAV+    L YA  +F  IR P
Sbjct: 9   LALFSKCKSLRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARRLFLDIRNP 68

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGF-VPNTYTFPFILKSCAKISAISEGKQI 152
           +  ++N +IRG S S +P  A++ +V M      +P++++F F+LK+ A   A++ G Q+
Sbjct: 69  DVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQL 128

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H   +  GL+S  FV T+LI+MYA+   L  AR VF++    + V++ A++        +
Sbjct: 129 HCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGV 188

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
            DA Q+F  MPIR                                         NL   N
Sbjct: 189 KDAEQVFRCMPIR-----------------------------------------NLTSWN 207

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            ++  Y+K G+L  AR++F  +  +D +SW+ MI G+ H  ++ +A   FR++ +  + P
Sbjct: 208 IMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRP 267

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N+V+   VL ACA  GA + G+ +H +++K+   L  +S+  +LID Y+KCGN+  A  V
Sbjct: 268 NEVSLTGVLSACAQAGAFEFGRILHGFVEKS-GFLQIISVNNALIDTYSKCGNLDMARLV 326

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           FD M  ++  SW AMI+G+AMHG  ++A+ LF+ M    ++PD ITF+ +L AC+HAGL+
Sbjct: 327 FDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLV 386

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           D+G  YF+ M+  Y I P ++HYGCMVDL GRAG   +A   +  M + P+  +W +LLG
Sbjct: 387 DLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLG 446

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           AC +HG L L   V + L EL+PEN G +VLLSN+YA AG+W DVA +R  +  + +KK 
Sbjct: 447 ACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRLKKT 506

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE-KSGFVPDTSEVLYDMDEEW 631
           PG S IEV  +++ F+ G+K +  +   ++ L EI + L  + G+VP+   VL+D++ E 
Sbjct: 507 PGWSMIEVNRIIYSFVAGEKQNDIAVEAHQKLREIMSRLRIEGGYVPEVGSVLHDIEVEE 566

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           KE ++S HSEKLA+A+G+     G  IR+VKNLR+C +CH+  KLISK++  EI+ RDR+
Sbjct: 567 KEDSVSQHSEKLAVAFGMAKLPRGRAIRVVKNLRICRDCHTVMKLISKVYEVEIVVRDRS 626

Query: 692 RFHHFKDGNCSCNDYW 707
           RFH F  G+CSC DYW
Sbjct: 627 RFHSFTHGSCSCRDYW 642


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 258/578 (44%), Positives = 373/578 (64%), Gaps = 13/578 (2%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA-RLVFNKSSLR 194
           IL++C  +  ++   Q+H H++KLG +++P V T   +  +    +  A  LVF   S+ 
Sbjct: 13  ILQACNTLPKLA---QLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLVF---SVE 66

Query: 195 DAVSYTALITGYASRGYLDDARQ----LFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250
           DA  Y A +     R Y + ++     +F    +      PN+     VL ACA +  L 
Sbjct: 67  DARVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLN 126

Query: 251 LGNWVCSLIEGHGLGSNLHVTNALIDMYSKC-GDLVKARDLFESIEKRDVISWNVMIGGY 309
           LG  V   +   G   ++ V N ++ MY  C G +  AR LF+ + K D ++W  MIGGY
Sbjct: 127 LGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGY 186

Query: 310 THTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNN 369
                   A+ LFR+M  + + P+DVT +SVL AC  LGAL+LGKWI +YI+K  + L  
Sbjct: 187 ARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEK-ERVLKT 245

Query: 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG 429
           V L  +L+DM+AKCG++  A  +F  M  +T+ SW ++I GLAMHG+  +A+SLF  M  
Sbjct: 246 VELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKA 305

Query: 430 EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489
            G+ P+DI F+G+LSAC+H+GL++ GRQYF+ M + + I PK++HYGCMVDLL RAGL  
Sbjct: 306 SGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVT 365

Query: 490 EAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549
           EA   ++ M ++P+  IW +L+ ACRVHG L+LGES++K L+  EP +   YVLLSN+Y 
Sbjct: 366 EALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEPMHESNYVLLSNIYG 425

Query: 550 GAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDA 609
               W+  + IR  +  KG++KVPG + IE+ + +HEF+VGD+ H Q   I +M++E+  
Sbjct: 426 KMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEIHEFIVGDRSHNQYNEIIKMVNEMGR 485

Query: 610 LLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGN 669
            ++++G+ P T+EV  D+DEE KE ALS HSEKLAIA+ L++T PG+ IRI KNLRVCG+
Sbjct: 486 EMKRAGYAPTTTEVFLDIDEEDKEDALSRHSEKLAIAFALLNTPPGSPIRITKNLRVCGD 545

Query: 670 CHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           CHSA+K ISKI+NREI+ RDR+RFHHF+DG CSC D+W
Sbjct: 546 CHSASKFISKIYNREIVMRDRSRFHHFRDGQCSCGDFW 583



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 134/404 (33%), Positives = 224/404 (55%), Gaps = 10/404 (2%)

Query: 31  QPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYAL-LVF-- 87
           QP L +L  C  +  + Q+H+ IIK G  N    L+K     A S    + YA+ LVF  
Sbjct: 8   QPCLDILQACNTLPKLAQLHTHIIKLGFQNNPLVLTKFTS--ASSNLDAIPYAMSLVFSV 65

Query: 88  ETIREPNQVIWNNIIRGHSLSS-SPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAI 146
           E  R  +  +++ IIR ++ SS S   AI +Y  M+  G  PN Y FPF+LK+CA +  +
Sbjct: 66  EDARVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDL 125

Query: 147 SEGKQIHAHVLKLGLESDPFVHTSLINMY-AQNGELESARLVFNKSSLRDAVSYTALITG 205
           + GK +H  ++K G + D FV  ++++MY   +G +E AR +F++    D V++TA+I G
Sbjct: 126 NLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGG 185

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           YA  G    A  LF +M I      P++ T+V+VLSAC  +G+LELG W+ S IE   + 
Sbjct: 186 YARLGQSAGAVGLFRKMQI--AGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVL 243

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
             + ++NAL+DM++KCGD+ KA  LF ++ KR ++SW  +I G        EA+ LF +M
Sbjct: 244 KTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEM 303

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
             S + P D+ F+ +L AC++ G ++ G+   + + +    +  +  +  ++D+ ++ G 
Sbjct: 304 KASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGL 363

Query: 386 IKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMI 428
           +  A +  + M  +     W  +IS   +HG+     S+  ++I
Sbjct: 364 VTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLI 407



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 170/371 (45%), Gaps = 45/371 (12%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEI-CAVSPFGDLSYALLVFETIR 91
           +L  C  ++++   K VH  ++K G  +  F  + ++ + C  S  G + +A  +F+ + 
Sbjct: 115 VLKACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCS--GGMEFARKLFDEMP 172

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           + + V W  +I G++       A+  + +M ++G  P+  T   +L +C  + A+  GK 
Sbjct: 173 KLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKW 232

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           I +++ K  +     +  +L++M+A+ G+++ A  +F   S R  VS+T++I G A  G 
Sbjct: 233 IESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGR 292

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHV 270
             +A  LF+EM  +    VP +   + +LSAC+H G +E G  +   +    G+   +  
Sbjct: 293 GLEAVSLFEEM--KASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEH 350

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
              ++D+ S+ G + +A +  E +                                   I
Sbjct: 351 YGCMVDLLSRAGLVTEALEFVERMP----------------------------------I 376

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           EPN + + +++ AC   G L LG+ I   + +N     + S +  L ++Y K  + +   
Sbjct: 377 EPNPIIWRTLISACRVHGELKLGESISKQLIRNEPM--HESNYVLLSNIYGKMLDWEKKS 434

Query: 391 QVFDGMGYKTL 401
           ++   MG K +
Sbjct: 435 KIRVAMGKKGI 445


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 278/711 (39%), Positives = 423/711 (59%), Gaps = 18/711 (2%)

Query: 2   ALPPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNT 61
           AL  S  +L P +L FP      +       S +  S+  +    + +H   +  G    
Sbjct: 90  ALLRSLPSLRPHLL-FPSPDSFSFAFAATSLSSSCSSRGNDAAAARTLHGLSVAAGYAAD 148

Query: 62  QFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRM 121
            F  S L ++      GD   A  VF+T+  P+ ++WN ++ G   S     A++ +VRM
Sbjct: 149 TFVASALAKLYFKLSRGD--DARKVFDTVPSPDTILWNTLLAGLPGSE----ALEAFVRM 202

Query: 122 ILSGFV-PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           + +G V P++ T    L++ A+ S ++ G+ +H + +K GL     V T L+++Y++ G+
Sbjct: 203 VDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGD 262

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
           ++SA+ +F++    D V+Y ALI+GY+  G ++ + +LF E+      + PN ST+V V+
Sbjct: 263 MDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELT--ASGWRPNSSTLVAVI 320

Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVI 300
              +  G   L   + + +    L ++  V+ AL  +Y +  D+  AR +F+++ ++ + 
Sbjct: 321 PVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTME 380

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           SWN MI GY      + A+ LF+ M + N++PN +T  S L ACA+LGAL LGKW+H  I
Sbjct: 381 SWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRII 440

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
            K   +LN V + T+LIDMYAKCG+I  A  +FD M  K + SWNAMISG  +HG+  +A
Sbjct: 441 SKEKLELN-VYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEA 499

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
           L L+  M+   + P   TF+ V+ AC+H GL+D G++ F  M  +Y+I+P ++H  CMVD
Sbjct: 500 LKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVD 559

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAI----WTSLLGACRVHGRLELGESVAKHLLELEPE 536
           LLGRAG  +EA  L+      P +AI    W +LLGAC VH   +L +  ++ L EL+ E
Sbjct: 560 LLGRAGKLNEALELISEF---PQSAIGPGVWGALLGACMVHKNSDLAKLASQKLFELDSE 616

Query: 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQ 596
           N G YVLLSN+Y     + + A +R     + + K PGC+ IE+G   H F+ GD +HPQ
Sbjct: 617 NAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQ 676

Query: 597 SKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGT 656
           S+ IY  L+ + A + ++G+ P T   LYD++EE KE  +  HSEKLAIA+GL+ST+PGT
Sbjct: 677 SEAIYSYLERLTAKMIEAGYQPVTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGT 736

Query: 657 TIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            IRI+KNLRVC +CH+ATK ISK+  R I+ RD +RFHHF+DG CSC DYW
Sbjct: 737 EIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 261/659 (39%), Positives = 400/659 (60%), Gaps = 46/659 (6%)

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           +L +F TI  P  + W ++IR ++    P  ++  ++ M+ SG  P+   FP +LKSCA 
Sbjct: 59  SLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCAL 118

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ-------------NGEL-------- 181
           +  ++ G+ +H +++++GL+ D +   +L+NMY++              GE+        
Sbjct: 119 LMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERT 178

Query: 182 -----------ESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV 230
                      +S R +F     +D VS+  +I G A  G  ++  ++  EM     N  
Sbjct: 179 RSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMG--GANLK 236

Query: 231 PNESTVVTVLSACAHMGSLELGNWV--CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288
           P+  T+ +VL   A    +  G  +  CS+ +G  L ++++V ++LIDMY+KC  +  + 
Sbjct: 237 PDSFTLSSVLPLIAENVDISRGKEIHGCSIRQG--LDADIYVASSLIDMYAKCTRVADSC 294

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
            +F  + +RD ISWN +I G      + E L  FRQML + I+P   +F S++PACA+L 
Sbjct: 295 RVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLT 354

Query: 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI 408
            L LGK +H YI +N     N+ + +SL+DMYAKCGNI+ A+Q+FD M  + + SW AMI
Sbjct: 355 TLHLGKQLHGYITRNGFD-ENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMI 413

Query: 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
            G A+HG+A  A+ LF +M  EG++        VL+AC+H GL+D   +YFN+M +D+ I
Sbjct: 414 MGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFGI 466

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
           +P ++HY  + DLLGRAG  +EA   +  M + P  +IW +LL ACRVH  +++ E VA 
Sbjct: 467 APGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVAN 526

Query: 529 HLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFL 588
            +LE++P N GAY+LL+N+Y+ A RW + A  R  +   G++K P CS IEV + V+ F+
Sbjct: 527 RILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFM 586

Query: 589 VGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYG 648
            GD+ HP  + I E ++ +  L+EK G+VPDTSEV +D++EE K+  +  HSE+LAI +G
Sbjct: 587 AGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFG 646

Query: 649 LISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +I+T  G TIR+ KNLRVC +CH+ATK ISKI  REI+ RD +RFHHFK+G CSC DYW
Sbjct: 647 IINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 705



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 198/417 (47%), Gaps = 40/417 (9%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           +L++   I + S+ +Q+HA VLK    S     + L+++Y+    L  +  +FN      
Sbjct: 12  LLRNPLSIKSRSQAQQLHAQVLKFQ-ASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPP 70

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
           A+++ ++I  Y S G    +   F  + +      P+ +   +VL +CA +  L LG  +
Sbjct: 71  ALAWKSVIRCYTSHGLPHQSLGSF--IGMLASGLYPDHNVFPSVLKSCALLMDLNLGESL 128

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA---------------------------- 287
              I   GL  +L+  NAL++MYSK   L ++                            
Sbjct: 129 HGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLS 188

Query: 288 ----RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
               R +FE + ++D++SWN +I G      Y+E L + R+M  +N++P+  T  SVLP 
Sbjct: 189 EDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPL 248

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLN-NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
            A    +  GK IH    +  Q L+ ++ + +SLIDMYAKC  +  + +VF  +  +   
Sbjct: 249 IAENVDISRGKEIHGCSIR--QGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGI 306

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           SWN++I+G   +G  D+ L  F +M+   ++P   +F  ++ AC H   L +G+Q  +  
Sbjct: 307 SWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQ-LHGY 365

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
           I        +     +VD+  + G    A+ +   M ++ D   WT+++  C +HG+
Sbjct: 366 ITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGCALHGQ 421



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 139/258 (53%), Gaps = 12/258 (4%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L L+++  ++   K++H   I+ GL    +  S LI++ A      ++ +  VF  + E 
Sbjct: 246 LPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCT--RVADSCRVFTLLTER 303

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           + + WN+II G   +      ++F+ +M+++   P +Y+F  I+ +CA ++ +  GKQ+H
Sbjct: 304 DGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLH 363

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
            ++ + G + + F+ +SL++MYA+ G + +A+ +F++  LRD VS+TA+I G A  G   
Sbjct: 364 GYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAP 423

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL-ELGNWVCSLIEGHGLGSNLHVTN 272
           DA +LF++M             +  VL+AC+H G + E   +  S+    G+   +    
Sbjct: 424 DAIELFEQM---------ETEGIKAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYA 474

Query: 273 ALIDMYSKCGDLVKARDL 290
           A+ D+  + G L +A D 
Sbjct: 475 AVSDLLGRAGRLEEAYDF 492



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 146/360 (40%), Gaps = 73/360 (20%)

Query: 277 MYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVT 336
           +YS    L  +  LF +I     ++W  +I  YT      ++L  F  ML S + P+   
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNV 108

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT--SLIDMYAKCGNIK------- 387
           F SVL +CA L  L+LG+ +H YI +     +   L+T  +L++MY+K   ++       
Sbjct: 109 FPSVLKSCALLMDLNLGESLHGYIIRVGLDFD---LYTGNALMNMYSKLRFLEESGRQRL 165

Query: 388 AAEQVFDGMGYKT-------------------------LASWNAMISGLAMHGKADKALS 422
            A +VFD M  +T                         L SWN +I+G A +G  ++ L 
Sbjct: 166 GAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLR 225

Query: 423 LFSRMIGEGLQPDDITFVGVLS---------------ACNHAGLLDIGRQYFNAMIQDY- 466
           +   M G  L+PD  T   VL                 C+    LD      +++I  Y 
Sbjct: 226 MIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYA 285

Query: 467 ---KISPKLQHYGCMVDLLG-----------RAGLFDEAEALLKTMEM---KPDAAIWTS 509
              +++   + +  + +  G           + GLFDE     + M M   KP +  ++S
Sbjct: 286 KCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSS 345

Query: 510 LLGACRVHGRLELGESVAKHLLELE-PENPGAYVLLSNMYAGAGRWDDVATI--RTRLND 566
           ++ AC     L LG+ +  ++      EN      L +MYA  G       I  R RL D
Sbjct: 346 IMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRD 405


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 261/675 (38%), Positives = 404/675 (59%), Gaps = 8/675 (1%)

Query: 36   LLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
            +L  C N  N++    VHS  I+ G    +F    L+++   S  G    AL VF  I +
Sbjct: 336  VLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDM--YSKCGLAGDALKVFVRIED 393

Query: 93   PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            P+ V W+ II           A + + RM  SG +PN +T   ++ +   +  +  G+ I
Sbjct: 394  PDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESI 453

Query: 153  HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
            HA V K G E D  V  +L+ MY + G ++    VF  ++ RD +S+ AL++G+      
Sbjct: 454  HACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETC 513

Query: 213  DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
            D   ++F++M    E F PN  T +++L +C+ +  ++LG  V + I  + L  N  V  
Sbjct: 514  DTGLRIFNQM--LAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGT 571

Query: 273  ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            AL+DMY+K   L  A  +F  + KRD+ +W V++ GY      ++A+  F QM +  ++P
Sbjct: 572  ALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKP 631

Query: 333  NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
            N+ T  S L  C+ +  LD G+ +H+   K  Q   ++ + ++L+DMYAKCG ++ AE V
Sbjct: 632  NEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQS-GDMFVASALVDMYAKCGCVEDAEVV 690

Query: 393  FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
            FDG+  +   SWN +I G + HG+  KAL  F  M+ EG  PD++TF+GVLSAC+H GL+
Sbjct: 691  FDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLI 750

Query: 453  DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
            + G+++FN++ + Y I+P ++HY CMVD+LGRAG F E E+ ++ M++  +  IW ++LG
Sbjct: 751  EEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLG 810

Query: 513  ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
            AC++HG +E GE  A  L ELEPE    Y+LLSNM+A  G WDDV  +R  ++ +G+KK 
Sbjct: 811  ACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKE 870

Query: 573  PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
            PGCS +EV   VH FL  D  HP+ + I+  L ++   L   G+ P+T  VL+++ +  K
Sbjct: 871  PGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREK 930

Query: 633  EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
            +  L +HSE+LA+A+ L+ST    TIRI KNLR+CG+CH   K IS+I N+E++ RD N 
Sbjct: 931  QELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINC 990

Query: 693  FHHFKDGNCSCNDYW 707
            FHHFK+G+CSC ++W
Sbjct: 991  FHHFKNGSCSCQNFW 1005



 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 159/534 (29%), Positives = 269/534 (50%), Gaps = 13/534 (2%)

Query: 22  DPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLS 81
           D   +L Q    L   +   ++   K +H Q+IK+G++      + L+ + A    G  +
Sbjct: 123 DSKGRLRQYSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYA--KCGSAN 180

Query: 82  YALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCA 141
           YA  VF  I E + V W  +I G         A+  +  M   G   N +T+   LK+C+
Sbjct: 181 YACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACS 240

Query: 142 KISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTA 201
               +  GKQ+HA  +K+G  SD FV ++L+++YA+ GE+  A  VF     ++AVS+ A
Sbjct: 241 MCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNA 300

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
           L+ G+A  G  +    LF  M   E NF  ++ T+ TVL  CA+ G+L  G  V SL   
Sbjct: 301 LLNGFAQMGDAEKVLNLFCRMTGSEINF--SKFTLSTVLKGCANSGNLRAGQIVHSLAIR 358

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALML 321
            G   +  ++  L+DMYSKCG    A  +F  IE  DV+SW+ +I         +EA  +
Sbjct: 359 IGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEV 418

Query: 322 FRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381
           F++M  S + PN  T  S++ A   LG L  G+ IHA + K   + +N ++  +L+ MY 
Sbjct: 419 FKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDN-TVCNALVTMYM 477

Query: 382 KCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVG 441
           K G+++   +VF+    + L SWNA++SG   +   D  L +F++M+ EG  P+  TF+ 
Sbjct: 478 KIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFIS 537

Query: 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK 501
           +L +C+    +D+G+Q    ++++            +VD+  +    ++AE +   + +K
Sbjct: 538 ILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTA-LVDMYAKNRFLEDAETIFNRL-IK 595

Query: 502 PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE--NPGAYVLLSNMYAGAGR 553
            D   WT ++      G+   GE   K  ++++ E   P  + L S++ +G  R
Sbjct: 596 RDLFAWTVIVAGYAQDGQ---GEKAVKCFIQMQREGVKPNEFTLASSL-SGCSR 645



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 33  SLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           SL+  S+   + + +Q+HS  IK G     F  S L+++ A    G +  A +VF+ +  
Sbjct: 639 SLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYA--KCGCVEDAEVVFDGLVS 696

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
            + V WN II G+S       A+K +  M+  G VP+  TF  +L +C+ +  I EGK+
Sbjct: 697 RDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKK 755


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 289/715 (40%), Positives = 407/715 (56%), Gaps = 59/715 (8%)

Query: 14  ILHFPP----------SSDPPYKLLQNQPSLAL------LSKCTNMQNIKQVHSQIIKTG 57
           +LHFP           SS P  +L Q  P   +      L    +++ ++ VHS+II   
Sbjct: 10  LLHFPKFRKFQSRKVSSSLPKLELDQKSPQETVFLLGQVLDTYPDIRTLRTVHSRIILED 69

Query: 58  LHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKF 117
           L        KL+   A +   D++ A  VF+ I E N +I N +IR +  +      +K 
Sbjct: 70  LRCNSSLGVKLMR--AYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKV 127

Query: 118 YVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ 177
           +  M      P+ YTFP +LK+C+    I  G++IH    K+GL S  FV   L++MY +
Sbjct: 128 FGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGK 187

Query: 178 NGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVV 237
            G L  ARLV ++ S RD VS+ +L+ GYA     DDA                      
Sbjct: 188 CGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDA---------------------- 225

Query: 238 TVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR 297
             L  C  M S+++          H  G+   +  A+ +  ++  +++  +D+F  + K+
Sbjct: 226 --LEVCREMESVKIS---------HDAGTMASLLPAVSNTTTE--NVMYVKDMFFKMGKK 272

Query: 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357
            ++SWNVMIG Y   +   EA+ L+ +M     EP+ V+  SVLPAC    AL LGK IH
Sbjct: 273 SLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIH 332

Query: 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA 417
            YI++  + + N+ L  +LIDMYAKCG ++ A  VF+ M  + + SW AMIS     G+ 
Sbjct: 333 GYIERK-KLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRG 391

Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
             A++LFS++   GL PD I FV  L+AC+HAGLL+ GR  F  M   YKI+P+L+H  C
Sbjct: 392 CDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLAC 451

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537
           MVDLLGRAG   EA   ++ M M+P+  +W +LLGACRVH   ++G   A  L +L PE 
Sbjct: 452 MVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQ 511

Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQS 597
            G YVLLSN+YA AGRW++V  IR  +  KG+KK PG S++EV  ++H FLVGD+ HPQS
Sbjct: 512 SGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQS 571

Query: 598 KHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTK---- 653
             IY  LD +   +++ G+VPD+   L+D++EE KE  L+ HSEKLAI + L++TK    
Sbjct: 572 DEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEE 631

Query: 654 -PGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
               TIRI KNLR+CG+CH A KLIS+I +REII RD NRFH F+ G CSC DYW
Sbjct: 632 DSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 271/581 (46%), Positives = 370/581 (63%), Gaps = 8/581 (1%)

Query: 132 TFPFILKSC-AKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN---GELESARLV 187
           T+P  L SC  K +++ E KQI A  +K  L++D  + T LIN   QN     ++ A  +
Sbjct: 24  TYPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAHQL 83

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
           F      D V + ++  GY+       A  LF  +     N +P++ T  ++L AC    
Sbjct: 84  FEAIPQPDIVLFNSMFRGYSRSNAPLKAISLF--IKALNYNLLPDDYTFPSLLKACVVAK 141

Query: 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG 307
           + + G  +  L    GL  N +V   LI+MY+ C D+  A+ +F+ I +  V+S+N +I 
Sbjct: 142 AFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIIT 201

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
           GY  +S   EAL LFRQ+    ++PNDVT LSVL +CA LGALDLGKWIH Y+ KN    
Sbjct: 202 GYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLD- 260

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
             V + T+LIDMYAKCG++  A  VF+ M  +   +W+AMI   AMHG+    +S+F  M
Sbjct: 261 KYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEM 320

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
               +QPD+ITF+G+L AC+H GL+D G +YF +M + Y I P ++HYGCMVDLLGRAGL
Sbjct: 321 ARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGL 380

Query: 488 FDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547
             EA   +  + +KP   +W +LL +C  HG LEL + V   +LEL+  + G YV+LSN+
Sbjct: 381 LHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVILSNL 440

Query: 548 YAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEI 607
            A AG+W+DV T+R  +  KG  K+PGCSSIEV +VVHEF  GD VH  S  ++  LDE+
Sbjct: 441 CARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGDGVHYVSTALHRALDEL 500

Query: 608 DALLEKSGFVPDTSEVLY-DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRV 666
              L+  G+VPDTS V++ DM++E KE  L +HSEKLAI++GL++T PGTTIR+VKNLRV
Sbjct: 501 VKELKSVGYVPDTSLVVHPDMEDEEKEITLRYHSEKLAISFGLLNTPPGTTIRVVKNLRV 560

Query: 667 CGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           CG+CHSA KLIS + +REII RD  RFHHFKDG CSC DYW
Sbjct: 561 CGDCHSAAKLISSLIDREIILRDVQRFHHFKDGKCSCGDYW 601


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 277/659 (42%), Positives = 404/659 (61%), Gaps = 4/659 (0%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           VH+ + K G     F  + LI+  A S  G++  A  VF+ I   + V W  ++  ++ +
Sbjct: 126 VHAYVYKLGHQADAFVGTALID--AYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAEN 183

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVH 168
                ++  + +M + G+ PN +T    LKSC  + A   GK +H   LK+  + D +V 
Sbjct: 184 YCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVG 243

Query: 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
            +L+ +Y ++GE+  A+  F +    D + ++ +I+ YA      +A +LF  M  +   
Sbjct: 244 IALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMR-QSSV 302

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288
            VPN  T  +VL ACA +  L LGN + S +   GL SN+ V+NAL+D+Y+KCG++  + 
Sbjct: 303 VVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSV 362

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
            LF    +++ ++WN +I GY    D ++AL LF  ML  +I+P +VT+ SVL A A L 
Sbjct: 363 KLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLV 422

Query: 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI 408
           AL+ G+ IH+   K     ++V +  SLIDMYAKCG I  A   FD M  +   SWNA+I
Sbjct: 423 ALEPGRQIHSLTIKTMYNKDSV-VANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALI 481

Query: 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
            G ++HG   +AL+LF  M     +P+ +TFVGVLSAC++AGLLD GR +F +M+QDY I
Sbjct: 482 CGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGI 541

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
            P ++HY CMV LLGR+G FDEA  L+  +  +P   +W +LLGAC +H  L+LG+  A+
Sbjct: 542 EPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQ 601

Query: 529 HLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFL 588
            +LE+EP++   +VLLSNMYA A RWD+VA +R  +  K +KK PG S +E   VVH F 
Sbjct: 602 RVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFT 661

Query: 589 VGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYG 648
           VGD  HP  K I+ ML+ +      +G+VPD S VL D++++ KE  L  HSE+LA+A+G
Sbjct: 662 VGDTSHPNIKLIFAMLEWLYKKTRDAGYVPDCSVVLLDVEDDEKERLLWMHSERLALAFG 721

Query: 649 LISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           LI    G +IRI+KNLR+C +CH+  KL+SKI  REI+ RD NRFHHF+ G CSC DYW
Sbjct: 722 LIQIPSGCSIRIIKNLRICVDCHAVIKLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 154/475 (32%), Positives = 251/475 (52%), Gaps = 12/475 (2%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K +H  I+K G     FA + L+       FG L  A  +F+ +   N V +  + +G S
Sbjct: 23  KSLHCHILKHGASLDLFAQNILLN--TYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFS 80

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            S     A +  +R+   G+  N + F  +LK    +        +HA+V KLG ++D F
Sbjct: 81  RSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAF 140

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V T+LI+ Y+  G +++AR VF+    +D VS+T ++  YA     +D+  LF +M I  
Sbjct: 141 VGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIM- 199

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWV--CSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
             + PN  T+   L +C  + + ++G  V  C+L   +    +L+V  AL+++Y+K G++
Sbjct: 200 -GYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCY--DRDLYVGIALLELYTKSGEI 256

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN-IEPNDVTFLSVLPA 343
            +A+  FE + K D+I W++MI  Y  +   KEAL LF +M QS+ + PN+ TF SVL A
Sbjct: 257 AEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQA 316

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
           CA L  L+LG  IH+ + K     +NV +  +L+D+YAKCG I+ + ++F G   K   +
Sbjct: 317 CASLVLLNLGNQIHSCVLKVGLD-SNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVA 375

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
           WN +I G    G  +KAL+LFS M+G  +QP ++T+  VL A      L+ GRQ  +  I
Sbjct: 376 WNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTI 435

Query: 464 QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           +       +     ++D+  + G  D+A      M+ K D   W +L+    +HG
Sbjct: 436 KTMYNKDSVVA-NSLIDMYAKCGRIDDARLTFDKMD-KQDEVSWNALICGYSIHG 488



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 193/397 (48%), Gaps = 11/397 (2%)

Query: 129 NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF 188
           +++++  +L+   +    + GK +H H+LK G   D F    L+N Y   G LE A  +F
Sbjct: 2   DSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLF 61

Query: 189 NKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS 248
           ++  L + VS+  L  G++       AR+L   + +  E +  N+    T+L     M  
Sbjct: 62  DEMPLTNTVSFVTLAQGFSRSHQFQRARRL--LLRLFREGYEVNQFVFTTLLKLLVSMDL 119

Query: 249 LELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGG 308
            +    V + +   G  ++  V  ALID YS CG++  AR +F+ I  +D++SW  M+  
Sbjct: 120 ADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVAC 179

Query: 309 YTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN 368
           Y     ++++L+LF QM      PN+ T  + L +C  L A  +GK +H    K      
Sbjct: 180 YAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYD-R 238

Query: 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMI 428
           ++ +  +L+++Y K G I  A+Q F+ M    L  W+ MIS  A   K+ +AL LF RM 
Sbjct: 239 DLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMR 298

Query: 429 GEG-LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
               + P++ TF  VL AC    LL++G Q  + +++   +   +     ++D+  + G 
Sbjct: 299 QSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLK-VGLDSNVFVSNALMDVYAKCGE 357

Query: 488 FDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGE 524
            + +  L      K + A W ++     + G ++LG+
Sbjct: 358 IENSVKLFTGSTEKNEVA-WNTI-----IVGYVQLGD 388


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 267/586 (45%), Positives = 368/586 (62%), Gaps = 40/586 (6%)

Query: 156 VLKLGLESDPFVHTSLINMYA--QNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
           +L+  L  DPF  + ++   A   +G L  ARLVFN+       +  ++I GY ++    
Sbjct: 1   MLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPR 60

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
            A   +  M +  +   P+  T  ++  +C   G L  G  +       G  S+ ++ N 
Sbjct: 61  QAILFYQLMML--QGLDPDRFTFPSLFKSC---GVLCEGKQLHCHSTKLGFASDAYIQNT 115

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISW------------------------------- 302
           L++MYS CG LV AR +F+ +  + V+SW                               
Sbjct: 116 LMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFC 175

Query: 303 -NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361
            N+MI G+   SDY+EAL LF +M  S ++ + VT  S+L AC +LGAL+LGKW+H YI+
Sbjct: 176 WNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIE 235

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421
           K   +++ V+L T+L+DMYAKCG+I++A +VF  M  K + +W A+I GLAM G+  KAL
Sbjct: 236 KEKIEVD-VALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKAL 294

Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481
            LF  M    ++PD ITFVGVL+AC+HAGL++ G  YFN+M   Y I P ++HYGCMVD+
Sbjct: 295 ELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDM 354

Query: 482 LGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541
           LGRAG   EAE L++ M M PD  +   LL ACR+HG L + E  A+ L+EL+P+N G Y
Sbjct: 355 LGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTY 414

Query: 542 VLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIY 601
           VLLSN+Y+    W+    +R  + ++ +KK PGCS+IEVG VVHEF+ GD  HPQS  IY
Sbjct: 415 VLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIY 474

Query: 602 EMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIV 661
           E LD++   L+ +G+VPD SEVL+DMDE+ KE  LS HSEKLAIA+GL+ST PGT IR+V
Sbjct: 475 ETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVV 534

Query: 662 KNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           KNLRVC +CHSA K IS+++NREII RDRNRFHHF  G+CSC D+W
Sbjct: 535 KNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 580



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 134/449 (29%), Positives = 211/449 (46%), Gaps = 70/449 (15%)

Query: 53  IIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPV 112
           +++T L    F+ SK++  CA+   G L YA LVF  I  P     N+IIRG++  + P 
Sbjct: 1   MLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPR 60

Query: 113 VAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLI 172
            AI FY  M+L G  P+ +TFP + KSC     + EGKQ+H H  KLG  SD ++  +L+
Sbjct: 61  QAILFYQLMMLQGLDPDRFTFPSLFKSCG---VLCEGKQLHCHSTKLGFASDAYIQNTLM 117

Query: 173 NMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPN 232
           NMY+  G L SAR VF+K   +  VS+  +I  YA      +A +LF  M I    F  N
Sbjct: 118 NMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWN 177

Query: 233 ------------------------------ESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
                                         + T+ ++L AC H+G+LELG W+   IE  
Sbjct: 178 IMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKE 237

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
            +  ++ +  AL+DMY+KCG +  A  +F+ + ++DV++W  +I G        +AL LF
Sbjct: 238 KIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELF 297

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
            +M  S ++P+ +TF+ VL AC++ G ++ G      +   +    ++  +  ++DM  +
Sbjct: 298 HEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGR 357

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
            G I  AE +   M                                   + PD    VG+
Sbjct: 358 AGRIAEAEDLIQNM----------------------------------PMAPDYFVLVGL 383

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPK 471
           LSAC   G L +  +    +I+   + PK
Sbjct: 384 LSACRIHGNLVVAERAAQQLIE---LDPK 409


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 265/711 (37%), Positives = 426/711 (59%), Gaps = 43/711 (6%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           +++L  C+++   +++H+++  +GL + Q   + L+ + A   FG +  A  +F++++  
Sbjct: 114 VSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYA--RFGSVGDAKRMFQSLQTR 171

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           ++  WN +I  HS S     A++ +  M      PN+ T+  ++   +    + EG++IH
Sbjct: 172 DETSWNAVILAHSQSGDWSGALRIFKEMKCD-MKPNSTTYINVISGFSTPEVLPEGRKIH 230

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
           A ++  G +SD  V T+LINMY + G    AR VF+K   RD VS+  +I  Y   G   
Sbjct: 231 AEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFH 290

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           +A +L+ ++ +  E F   ++T V++L AC+ + +L  G  V S I   GL S + V  A
Sbjct: 291 EALELYQKLDM--EGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATA 348

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA--------------- 318
           L++MY+KCG L +AR +F +++ RD ++W+ +IG Y      K+A               
Sbjct: 349 LVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDT 408

Query: 319 -------------------LMLFRQML-QSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
                              + +FR+M   + ++P+ VTF++VL ACA LG L   K +HA
Sbjct: 409 ICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHA 468

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKAD 418
            I ++  + +NV +  +LI+MYA+CG+++ AE++F     KT+ SW AM++  + +G+  
Sbjct: 469 QISESELE-SNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYA 527

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478
           +AL LF  M  EG++PDD+T+  +L  C H G L+ G +YF  M + + ++P   H+  M
Sbjct: 528 EALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAM 587

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
           VDLLGR+G   +A+ LL++M  +PD   W + L ACR+HG+LELGE+ A+ + EL+P + 
Sbjct: 588 VDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSST 647

Query: 539 GAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSK 598
             Y+ +SN+YA  G W+ VA++R ++ ++G+KK+PG S IEV   +HEF  G K HP++ 
Sbjct: 648 APYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTD 707

Query: 599 HIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTK-PGTT 657
            I E L  +  L+  +G+VPDT  VL+D+ E  KE  L +HSEK+AIA+GL+S++  G  
Sbjct: 708 EICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEP 767

Query: 658 IRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHF-KDGNCSCNDYW 707
           IR+VKNLRVC +CH+ATK I++I  R+II RD NRFH F  DG CSC DYW
Sbjct: 768 IRVVKNLRVCSDCHTATKFIARIAGRDIILRDCNRFHRFSSDGKCSCGDYW 818



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 121/393 (30%), Positives = 210/393 (53%), Gaps = 11/393 (2%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P+  TF  +L SC+    ++EG+ +H  +     E D  V  +LI+MY +   L  AR V
Sbjct: 5   PDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64

Query: 188 FNKSSLR--DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH 245
           F     R  + VS+ A+I  YA  G+  +A  L+  M +  +    +  T V+VL AC+ 
Sbjct: 65  FESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNL--QGLGTDHVTFVSVLGACS- 121

Query: 246 MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVM 305
             SL  G  + + +   GL S   + NAL+ MY++ G +  A+ +F+S++ RD  SWN +
Sbjct: 122 --SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAV 179

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365
           I  ++ + D+  AL +F++M + +++PN  T+++V+   +    L  G+ IHA I  N  
Sbjct: 180 ILAHSQSGDWSGALRIFKEM-KCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGF 238

Query: 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
             +++ + T+LI+MY KCG+   A +VFD M  + + SWN MI     +G   +AL L+ 
Sbjct: 239 D-SDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQ 297

Query: 426 RMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485
           ++  EG +    TFV +L AC+    L  GR   ++ I +  +  ++     +V++  + 
Sbjct: 298 KLDMEGFKRTKATFVSILGACSSVKALAQGR-LVHSHILERGLDSEVAVATALVNMYAKC 356

Query: 486 GLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           G  +EA  +   M+ + DA  W++L+GA   +G
Sbjct: 357 GSLEEARKVFNAMKNR-DAVAWSTLIGAYASNG 388



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 101/184 (54%), Gaps = 10/184 (5%)

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           +P++VTFL+VL +C+  G +  G+ +H  I  +  + + + +  +LI MY KC ++  A 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTM-VGNALISMYGKCDSLVDAR 62

Query: 391 QVFDGMGY--KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
            VF+ M +  + + SWNAMI+  A +G + +AL L+ RM  +GL  D +TFV VL AC+ 
Sbjct: 63  SVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS 122

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYG-CMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
              L  GR+  N +   Y      Q     +V +  R G   +A+ + ++++ + D   W
Sbjct: 123 ---LAQGREIHNRVF--YSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTR-DETSW 176

Query: 508 TSLL 511
            +++
Sbjct: 177 NAVI 180


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 261/571 (45%), Positives = 373/571 (65%), Gaps = 7/571 (1%)

Query: 141 AKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN---GELESARLVFNKSSLRDAV 197
           +K ++++E KQI A+ +K  L+SD  V T LIN    N     ++ A  +F++   +D +
Sbjct: 37  SKCTSLNELKQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDII 96

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
            +  +  GYA       A  LF E+       +P++ T  ++L ACA   +L  G  +  
Sbjct: 97  LFNIMARGYARSNSPYLAFSLFGELLC--SGLLPDDYTFSSLLKACASSKALREGMGLHC 154

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
                GL  N+++   LI+MY++C D+  AR +F+ +E+  ++S+N +I GY  +S   E
Sbjct: 155 FAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNE 214

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           AL LFR++  SNIEP DVT LSV+ +CA LGALDLGKWIH Y+ K       V + T+LI
Sbjct: 215 ALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFD-KYVKVNTALI 273

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI 437
           DM+AKCG++  A  +F+GM  +   +W+AMI   A HG   KA+S+F  M  EG++PD+I
Sbjct: 274 DMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEI 333

Query: 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT 497
           TF+G+L AC+HAGL++ GR YF +M + Y I+P ++HYGCMVDLLGRAG  DEA   +  
Sbjct: 334 TFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDK 393

Query: 498 MEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557
           +E+K    +W +LL AC  HG +E+ + V + + EL+  + G YV+LSN+YA  GRW+DV
Sbjct: 394 LEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRWEDV 453

Query: 558 ATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFV 617
             +R  + D+G+ KVPGCSS+EV +VVHEF  GD VH  S  +   LDE+   ++  G+V
Sbjct: 454 NHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRALDELMKEIKLVGYV 513

Query: 618 PDTSEVLY-DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKL 676
           PDTS V + DM+EE KE  L +HSEKLA+A+GL++T PGTTIR+ KNLR+CG+CH+A KL
Sbjct: 514 PDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKL 573

Query: 677 ISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           IS IF R+I+ RD  RFH F+DG CSC D+W
Sbjct: 574 ISFIFGRKIVIRDVQRFHRFEDGKCSCGDFW 604



 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 133/430 (30%), Positives = 239/430 (55%), Gaps = 10/430 (2%)

Query: 2   ALPPSSLTLSPSILHFPPSSDPPYKLLQNQ-PSLALLSKCTNMQNIKQVHSQIIKTGLHN 60
            +P    TL+      P S+    + + NQ   L+LLSKCT++  +KQ+ +  IKT L +
Sbjct: 5   CIPTCQFTLTK-----PSSAFSKNEFVINQLHPLSLLSKCTSLNELKQIQAYTIKTNLQS 59

Query: 61  TQFALSKLIEICAVSPFGD-LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYV 119
               L+KLI  C ++P    + +A  +F+ I + + +++N + RG++ S+SP +A   + 
Sbjct: 60  DISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFG 119

Query: 120 RMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNG 179
            ++ SG +P+ YTF  +LK+CA   A+ EG  +H   +KLGL  + ++  +LINMYA+  
Sbjct: 120 ELLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECN 179

Query: 180 ELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTV 239
           ++ +AR VF++      VSY A+ITGYA     ++A  LF E+  +  N  P + T+++V
Sbjct: 180 DMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFREL--QASNIEPTDVTMLSV 237

Query: 240 LSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV 299
           + +CA +G+L+LG W+   ++  G    + V  ALIDM++KCG L  A  +FE +  RD 
Sbjct: 238 IMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDT 297

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
            +W+ MI  +    D  +A+ +F +M +  + P+++TFL +L AC++ G ++ G+     
Sbjct: 298 QAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYS 357

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKAD 418
           + K +     +  +  ++D+  + G++  A    D +  K T   W  ++S  + HG  +
Sbjct: 358 MSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVE 417

Query: 419 KALSLFSRMI 428
            A  +  R+ 
Sbjct: 418 MAKRVIERIF 427


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 287/700 (41%), Positives = 409/700 (58%), Gaps = 24/700 (3%)

Query: 10  LSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLI 69
           + P    FPP                +L  C  + + +++H    K G     F  + LI
Sbjct: 214 IRPDFYTFPP----------------VLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLI 257

Query: 70  EICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPN 129
            +   S FG    A  +F+ +   +   WN +I G   + +   A+     M L G   N
Sbjct: 258 HM--YSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMN 315

Query: 130 TYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN 189
             T   IL  C ++  IS    IH +V+K GLE D FV  +LINMYA+ G LE AR  F 
Sbjct: 316 FVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQ 375

Query: 190 KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL 249
           +  + D VS+ ++I  Y        A   F +M +    F P+  T+V++ S  A     
Sbjct: 376 QMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQL--NGFQPDLLTLVSLASIVAQSRDC 433

Query: 250 ELGNWVCSLIEGHG-LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGG 308
           +    V   I   G L  ++ + NA++DMY+K G L  A  +FE I  +DVISWN +I G
Sbjct: 434 KNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITG 493

Query: 309 YTHTSDYKEALMLFRQMLQ-SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
           Y       EA+ +++ M +   I PN  T++S+LPA A++GAL  G  IH  + K +  L
Sbjct: 494 YAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHL 553

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
           + V + T LID+Y KCG +  A  +F  +  ++  +WNA+IS   +HG A+K L LF  M
Sbjct: 554 D-VFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEM 612

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
           + EG++PD +TFV +LSAC+H+G ++ G+  F  M Q+Y I P L+HYGCMVDLLGRAG 
Sbjct: 613 LDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGY 671

Query: 488 FDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547
            + A   +K M ++PDA+IW +LLGACR+HG +ELG+  +  L E++ +N G YVLLSN+
Sbjct: 672 LEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNI 731

Query: 548 YAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEI 607
           YA  G+W+ V  +R+   ++G+KK PG S+IEV   V  F  G++ HP+ K IYE L  +
Sbjct: 732 YANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVL 791

Query: 608 DALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVC 667
            A ++  G++PD S VL D++E+ KE  L+ HSE+LAIA+G+IST P + IRI KNLRVC
Sbjct: 792 TAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVC 851

Query: 668 GNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           G+CH+ATK IS+I  REI+ RD NRFHHFKDG CSC DYW
Sbjct: 852 GDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 149/528 (28%), Positives = 267/528 (50%), Gaps = 19/528 (3%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ 95
           L    T     K +H+ ++  G   + F  ++L+ + A    GD+S +   F+ I + + 
Sbjct: 125 LFDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYA--NLGDVSLSRCTFDQIPQKDV 182

Query: 96  VIWNNIIRGHSLSSSPVVAIK-FYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
             WN++I  +  +     AI  FY  +++S   P+ YTFP +LK+C     + +G++IH 
Sbjct: 183 YAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG---TLVDGRKIHC 239

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
              KLG + + FV  SLI+MY++ G    AR +F+    RD  S+ A+I+G    G    
Sbjct: 240 WAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQ 299

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274
           A  + DEM  R E    N  TVV++L  C  +G +     +   +  HGL  +L V+NAL
Sbjct: 300 ALDVLDEM--RLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNAL 357

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
           I+MY+K G+L  AR  F+ +   DV+SWN +I  Y    D   A   F +M  +  +P+ 
Sbjct: 358 INMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDL 417

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           +T +S+    A        + +H +I +    + +V +  +++DMYAK G + +A +VF+
Sbjct: 418 LTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFE 477

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ--PDDITFVGVLSACNHAGLL 452
            +  K + SWN +I+G A +G A +A+ ++ +M+ E  +  P+  T+V +L A  H G L
Sbjct: 478 IIPVKDVISWNTLITGYAQNGLASEAIEVY-KMMEECKEIIPNQGTWVSILPAYAHVGAL 536

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
             G +    +I+   +   +    C++D+ G+ G   +A +L   +  +  +  W +++ 
Sbjct: 537 QQGMKIHGRVIKT-NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE-SSVTWNAIIS 594

Query: 513 ACRVHGRLELGESVAKHLLE--LEPENPGAYVLLS----NMYAGAGRW 554
              +HG  E    +   +L+  ++P++     LLS    + +   G+W
Sbjct: 595 CHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKW 642



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 199/434 (45%), Gaps = 11/434 (2%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           F F+  S  K       K +HA ++  G     F+ T L+N+YA  G++  +R  F++  
Sbjct: 122 FNFLFDSSTKTPF---AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIP 178

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
            +D  ++ ++I+ Y   G+  +A   F ++ +  E   P+  T   VL AC   G+L  G
Sbjct: 179 QKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSE-IRPDFYTFPPVLKAC---GTLVDG 234

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
             +       G   N+ V  +LI MYS+ G    AR LF+ +  RD+ SWN MI G    
Sbjct: 235 RKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQN 294

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
            +  +AL +  +M    I+ N VT +S+LP C  LG +     IH Y+ K+  +  ++ +
Sbjct: 295 GNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEF-DLFV 353

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
             +LI+MYAK GN++ A + F  M    + SWN++I+    +     A   F +M   G 
Sbjct: 354 SNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGF 413

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
           QPD +T V + S    +      R     +++   +   +     +VD+  + GL D A 
Sbjct: 414 QPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAH 473

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEP--ENPGAYVLLSNMYAG 550
            + + + +K D   W +L+     +G       V K + E +    N G +V +   YA 
Sbjct: 474 KVFEIIPVK-DVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAH 532

Query: 551 AGRWDDVATIRTRL 564
            G       I  R+
Sbjct: 533 VGALQQGMKIHGRV 546


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 287/700 (41%), Positives = 409/700 (58%), Gaps = 24/700 (3%)

Query: 10  LSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLI 69
           + P    FPP                +L  C  + + +++H    K G     F  + LI
Sbjct: 214 IRPDFYTFPP----------------VLKACGTLVDGRRIHCWAFKLGFQWNVFVAASLI 257

Query: 70  EICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPN 129
            +   S FG    A  +F+ +   +   WN +I G   + +   A+     M L G   N
Sbjct: 258 HM--YSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMN 315

Query: 130 TYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN 189
             T   IL  C ++  IS    IH +V+K GLE D FV  +LINMYA+ G LE AR  F 
Sbjct: 316 FVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQ 375

Query: 190 KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL 249
           +  + D VS+ ++I  Y        A   F +M +    F P+  T+V++ S  A     
Sbjct: 376 QMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQL--NGFQPDLLTLVSLASIVAQSRDC 433

Query: 250 ELGNWVCSLIEGHG-LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGG 308
           +    V   I   G L  ++ + NA++DMY+K G L  A  +FE I  +DVISWN +I G
Sbjct: 434 KNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITG 493

Query: 309 YTHTSDYKEALMLFRQMLQ-SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
           Y       EA+ +++ M +   I PN  T++S+LPA A++GAL  G  IH  + K +  L
Sbjct: 494 YAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHL 553

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
           + V + T LID+Y KCG +  A  +F  +  ++  +WNA+IS   +HG A+K L LF  M
Sbjct: 554 D-VFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEM 612

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
           + EG++PD +TFV +LSAC+H+G ++ G+  F  M Q+Y I P L+HYGCMVDLLGRAG 
Sbjct: 613 LDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGY 671

Query: 488 FDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547
            + A   +K M ++PDA+IW +LLGACR+HG +ELG+  +  L E++ +N G YVLLSN+
Sbjct: 672 LEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNI 731

Query: 548 YAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEI 607
           YA  G+W+ V  +R+   ++G+KK PG S+IEV   V  F  G++ HP+ K IYE L  +
Sbjct: 732 YANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVL 791

Query: 608 DALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVC 667
            A ++  G++PD S VL D++E+ KE  L+ HSE+LAIA+G+IST P + IRI KNLRVC
Sbjct: 792 TAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVC 851

Query: 668 GNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           G+CH+ATK IS+I  REI+ RD NRFHHFKDG CSC DYW
Sbjct: 852 GDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 149/528 (28%), Positives = 267/528 (50%), Gaps = 19/528 (3%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ 95
           L    T     K +H+ ++  G   + F  ++L+ + A    GD+S +   F+ I + + 
Sbjct: 125 LFDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYA--NLGDVSLSRCTFDQIPQKDV 182

Query: 96  VIWNNIIRGHSLSSSPVVAIK-FYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
             WN++I  +  +     AI  FY  +++S   P+ YTFP +LK+C     + +G++IH 
Sbjct: 183 YTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG---TLVDGRRIHC 239

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
              KLG + + FV  SLI+MY++ G    AR +F+    RD  S+ A+I+G    G    
Sbjct: 240 WAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQ 299

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274
           A  + DEM  R E    N  TVV++L  C  +G +     +   +  HGL  +L V+NAL
Sbjct: 300 ALDVLDEM--RLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNAL 357

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
           I+MY+K G+L  AR  F+ +   DV+SWN +I  Y    D   A   F +M  +  +P+ 
Sbjct: 358 INMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDL 417

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           +T +S+    A        + +H +I +    + +V +  +++DMYAK G + +A +VF+
Sbjct: 418 LTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFE 477

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ--PDDITFVGVLSACNHAGLL 452
            +  K + SWN +I+G A +G A +A+ ++ +M+ E  +  P+  T+V +L A  H G L
Sbjct: 478 IILVKDVISWNTLITGYAQNGLASEAIEVY-KMMEECKEIIPNQGTWVSILPAYAHVGAL 536

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
             G +    +I+   +   +    C++D+ G+ G   +A +L   +  +  +  W +++ 
Sbjct: 537 QQGMRIHGRVIKT-NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE-SSVTWNAIIS 594

Query: 513 ACRVHGRLELGESVAKHLLE--LEPENPGAYVLLS----NMYAGAGRW 554
              +HG  E    +   +L+  ++P++     LLS    + +   G+W
Sbjct: 595 CHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKW 642



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 199/434 (45%), Gaps = 11/434 (2%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           F F+  S  K       K +HA ++  G     F+ T L+N+YA  G++  +R  F++  
Sbjct: 122 FNFLFDSSTKTPF---AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIP 178

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
            +D  ++ ++I+ Y   G+  +A   F ++ +  E   P+  T   VL AC   G+L  G
Sbjct: 179 QKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSE-IRPDFYTFPPVLKAC---GTLVDG 234

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
             +       G   N+ V  +LI MYS+ G    AR LF+ +  RD+ SWN MI G    
Sbjct: 235 RRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQN 294

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
            +  +AL +  +M    I+ N VT +S+LP C  LG +     IH Y+ K+  +  ++ +
Sbjct: 295 GNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEF-DLFV 353

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
             +LI+MYAK GN++ A + F  M    + SWN++I+    +     A   F +M   G 
Sbjct: 354 SNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGF 413

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
           QPD +T V + S    +      R     +++   +   +     +VD+  + GL D A 
Sbjct: 414 QPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAH 473

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEP--ENPGAYVLLSNMYAG 550
            + + + +K D   W +L+     +G       V K + E +    N G +V +   YA 
Sbjct: 474 KVFEIILVK-DVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAH 532

Query: 551 AGRWDDVATIRTRL 564
            G       I  R+
Sbjct: 533 VGALQQGMRIHGRV 546


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 257/574 (44%), Positives = 366/574 (63%), Gaps = 12/574 (2%)

Query: 144 SAISEGKQIHAHVLKLGLESDPFVHTSLINM--------YAQNGELESARLVFNKSSLRD 195
           + +S+  QIHA +LK GL+++P + T   +         YA +     +      +   D
Sbjct: 29  NTLSKLTQIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSFLFPPSHTTSTPTPSYD 88

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
           A  +  LI  Y+          LF    +R     PN+ T   VL  CA +GSL LG  V
Sbjct: 89  AFLFNTLIRAYSQTRDSKSNSFLFYRTMLRY-GVTPNKFTFPFVLKGCAGIGSLRLGKCV 147

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGD--LVKARDLFESIEKRDVISWNVMIGGYTHTS 313
              +   G   ++HV N LI MY   G+     A  +F+   K D ++W+ MI G+    
Sbjct: 148 HGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRLG 207

Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
               A+ LFR+M    + P+++T +SVL ACA LGAL+LGKW+ +Y++K +    +V L 
Sbjct: 208 CSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKKNIP-KSVELC 266

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
            +LIDM+AKCGN+  A ++F  M  +T+ SW ++I+GLAMHG+   A+SLF  M+  G+ 
Sbjct: 267 NALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGIT 326

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
           PDD+ F+GVLSAC+H+GL+D GR YF +M +++ I PK++HYGCMVDLL R G   EA  
Sbjct: 327 PDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAFE 386

Query: 494 LLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGR 553
            ++ M  +P+  IW +++ AC   G L+LGES++K L++ EP +   YVLLSN+YA   +
Sbjct: 387 FVQKMPFEPNQIIWRTIITACHATGELKLGESISKELIKSEPMHESNYVLLSNIYAKLRQ 446

Query: 554 WDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEK 613
           W+    +R  ++ +GMKKVPG + IEV + ++EF+ GDK H Q K IYEM+DE+   ++K
Sbjct: 447 WEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKSHDQYKEIYEMVDEMGREIKK 506

Query: 614 SGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSA 673
           +G+VP TS+VL D+DEE KE AL  HSEKLAIA+ L++T PGT+IRIVKNLRVC +CHSA
Sbjct: 507 AGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNTPPGTSIRIVKNLRVCEDCHSA 566

Query: 674 TKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           TK ISK++NREI+ RDRNRFHHFK+G CSC D+W
Sbjct: 567 TKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 600



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 140/420 (33%), Positives = 222/420 (52%), Gaps = 17/420 (4%)

Query: 22  DPPYKLLQNQPSLALL-SKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDL 80
           + P   L  Q  L LL S C  +  + Q+H+ I+KTGL N    L+K       S    +
Sbjct: 9   NTPKTRLTEQTILTLLNSHCNTLSKLTQIHAFILKTGLQNNPLILTKFTS--TSSNLNSI 66

Query: 81  SYAL-LVF---ETIREP----NQVIWNNIIRGHSLS-SSPVVAIKFYVRMILSGFVPNTY 131
            YA   +F    T   P    +  ++N +IR +S +  S   +  FY  M+  G  PN +
Sbjct: 67  HYATSFLFPPSHTTSTPTPSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKF 126

Query: 132 TFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE--LESARLVFN 189
           TFPF+LK CA I ++  GK +H  V+K G E D  V  +LI+MY   GE   E A  VF+
Sbjct: 127 TFPFVLKGCAGIGSLRLGKCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFD 186

Query: 190 KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL 249
            S   D V+++A+I G+   G    A  LF EM +      P+E T+V+VLSACA +G+L
Sbjct: 187 DSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVM--GVCPDEITMVSVLSACADLGAL 244

Query: 250 ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309
           ELG WV S +E   +  ++ + NALIDM++KCG++ KA  LF  ++ R ++SW  +I G 
Sbjct: 245 ELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGL 304

Query: 310 THTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNN 369
                  +A+ LF +M+++ I P+DV F+ VL AC++ G +D G++    +++N   +  
Sbjct: 305 AMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPK 364

Query: 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMI 428
           V  +  ++D+  + G +K A +    M ++     W  +I+     G+     S+   +I
Sbjct: 365 VEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELI 424



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 157/357 (43%), Gaps = 41/357 (11%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEI-CAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           K VH  ++K G       L+ LI + C +   G   +A  VF+   + + V W+ +I G 
Sbjct: 145 KCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDG-FEFAEKVFDDSPKMDTVTWSAMIAGF 203

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
                   A+  +  M + G  P+  T   +L +CA + A+  GK + ++V K  +    
Sbjct: 204 VRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKKNIPKSV 263

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
            +  +LI+M+A+ G ++ A  +F +   R  VS+T++I G A  G   DA  LFDEM   
Sbjct: 264 ELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMV-- 321

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE-GHGLGSNLHVTNALIDMYSKCGDL 284
           E    P++   + VLSAC+H G ++ G +    +E    +   +     ++D+  +    
Sbjct: 322 ENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCR---- 377

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
                                 GG+      KEA    ++M     EPN + + +++ AC
Sbjct: 378 ----------------------GGFV-----KEAFEFVQKM---PFEPNQIIWRTIITAC 407

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
              G L LG+ I   + K+     + S +  L ++YAK    +   +V + M  + +
Sbjct: 408 HATGELKLGESISKELIKSEPM--HESNYVLLSNIYAKLRQWEKKTKVREMMDMRGM 462


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 266/617 (43%), Positives = 388/617 (62%), Gaps = 8/617 (1%)

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
           WN++I   + S     A+  +  M      P   +FP  +K+C+ +  I  GKQ H    
Sbjct: 44  WNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAF 103

Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ 217
             G +SD FV ++LI MY+  G+LE AR VF++   R+ VS+T++I GY   G   DA  
Sbjct: 104 VFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVS 163

Query: 218 LFDEMPIREEN----FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           LF ++ + E +       +   +V+V+SAC+ + +  L   + S +   G    + V N 
Sbjct: 164 LFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNT 223

Query: 274 LIDMYSKCGD--LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           L+D Y+K G+  +  AR +F+ I  +D +S+N ++  Y  +    EA  +FR+++++ + 
Sbjct: 224 LLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVV 283

Query: 332 P-NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
             N +T  +VL A ++ GAL +GK IH  + +   + ++V + TS+IDMY KCG ++ A 
Sbjct: 284 TFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLE-DDVIVGTSIIDMYCKCGRVETAR 342

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           + FD M  K + SW AMI+G  MHG A KAL LF  MI  G++P+ ITFV VL+AC+HAG
Sbjct: 343 KAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAG 402

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L   G ++FNAM   + + P L+HYGCMVDLLGRAG   +A  L++ M+MKPD+ IW+SL
Sbjct: 403 LHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSL 462

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           L ACR+H  +EL E     L EL+  N G Y+LLS++YA AGRW DV  +R  + ++G+ 
Sbjct: 463 LAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLV 522

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           K PG S +E+   VH FL+GD+ HPQ + IYE L E++  L ++G+V +TS V +D+DEE
Sbjct: 523 KPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEE 582

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KE  L  HSEKLAIA+G+++T PG+T+ +VKNLRVC +CH+  KLISKI +RE + RD 
Sbjct: 583 EKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDA 642

Query: 691 NRFHHFKDGNCSCNDYW 707
            RFHHFKDG CSC DYW
Sbjct: 643 KRFHHFKDGGCSCGDYW 659



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/421 (27%), Positives = 201/421 (47%), Gaps = 48/421 (11%)

Query: 37  LSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           +  C+++ +I   KQ H Q    G  +  F  S LI +   S  G L  A  VF+ I + 
Sbjct: 83  IKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVM--YSTCGKLEDARKVFDEIPKR 140

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMIL------SGFVPNTYTFPFILKSCAKISAIS 147
           N V W ++IRG+ L+ + + A+  +  +++           ++     ++ +C+++ A  
Sbjct: 141 NIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKG 200

Query: 148 EGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE--LESARLVFNKSSLRDAVSYTALITG 205
             + IH+ V+K G +    V  +L++ YA+ GE  +  AR +F++   +D VSY ++++ 
Sbjct: 201 LTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSV 260

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           YA  G  ++A ++F  + ++ +    N  T+ TVL A +H G+L +G  +   +   GL 
Sbjct: 261 YAQSGMSNEAFEVFRRL-VKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLE 319

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
            ++ V  ++IDMY KCG +  AR  F+ ++ ++V SW  MI GY       +AL LF  M
Sbjct: 320 DDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAM 379

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
           + S + PN +TF+SVL AC++ G                    +V  W     M  + G 
Sbjct: 380 IDSGVRPNYITFVSVLAACSHAGL-------------------HVEGWRWFNAMKGRFGV 420

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
               E             +  M+  L   G   KA  L  RM    ++PD I +  +L+A
Sbjct: 421 EPGLEH------------YGCMVDLLGRAGFLQKAYDLIQRM---KMKPDSIIWSSLLAA 465

Query: 446 C 446
           C
Sbjct: 466 C 466



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 150/329 (45%), Gaps = 62/329 (18%)

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
           ++K DV SWN +I     + D  EAL+ F  M + ++ P   +F   + AC+ L  +  G
Sbjct: 36  VDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSG 95

Query: 354 KWIH--AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGL 411
           K  H  A++   +Q  +++ + ++LI MY+ CG ++ A +VFD +  + + SW +MI G 
Sbjct: 96  KQTHQQAFV-FGYQ--SDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGY 152

Query: 412 AMHGKADKALSLFSRMIGEGLQPDDITF------VGVLSACNHA---------------- 449
            ++G A  A+SLF  ++ +    DD  F      V V+SAC+                  
Sbjct: 153 DLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKR 212

Query: 450 ----------GLLD-----------IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488
                      LLD           + R+ F+ ++   ++S     Y  ++ +  ++G+ 
Sbjct: 213 GFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVS-----YNSIMSVYAQSGMS 267

Query: 489 DEA----EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP---GAY 541
           +EA      L+K   +  +A   +++L A    G L +G+ +   ++ +  E+    G  
Sbjct: 268 NEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTS 327

Query: 542 VLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           ++  +MY   GR +       R+ +K ++
Sbjct: 328 II--DMYCKCGRVETARKAFDRMKNKNVR 354


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 272/685 (39%), Positives = 409/685 (59%), Gaps = 77/685 (11%)

Query: 28  LQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF-GDLSYALLV 86
           +   P +++L KC ++  ++Q+H+Q+IKT L N QF +S+LI  C++S   G L YA  V
Sbjct: 4   ISTNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSV 63

Query: 87  FETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI--LSGFVPNTYTFPFILKSCAKIS 144
           F  I+ PN  I+  +I+G S +S+PV ++  Y RM+  L+      ++ P +LK+C K+ 
Sbjct: 64  FSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLL 123

Query: 145 AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
           A  EG+Q+H  VLK  L  DPFV  S++ MY   GE+E A                    
Sbjct: 124 AFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELA-------------------- 163

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
                      R++FD MP R+         VV+               W          
Sbjct: 164 -----------RRVFDRMPNRD---------VVS---------------W---------- 178

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
                  N++I  Y K G++  A+ +FE++  +DV++W  MI  Y       +AL LFR+
Sbjct: 179 -------NSMIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFRE 231

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           ML   + P+    +SVL A A LG ++ GKW+HAY+  N  +L++  + ++LIDMY+KCG
Sbjct: 232 MLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCG 291

Query: 385 NIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
            I+ A  VF  + ++  +  WN+MISGLA+HG A +AL +F  M    ++P++ITF+G+L
Sbjct: 292 YIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLL 351

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
           S C+H GL++ G+ YF +M + YKI P++QHYGCM+DL GRAG  ++A  +++ M  + D
Sbjct: 352 STCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEAD 411

Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563
              W ++L A   HG +E+G+S A   +EL P++  +YVLLSN+YA AGRWDDVA IR  
Sbjct: 412 LLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLM 471

Query: 564 LNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQ-SKHIYEMLDEIDALLEKSGFVPDTSE 622
           +  +G+KK+ GCSS+ V   VHEFL+G ++    S  +   + E+ + L+  G+ PD ++
Sbjct: 472 MRQRGVKKIAGCSSMLVNGKVHEFLLGKELDSSYSGQVLAKIAEVVSRLKLQGYEPDLTQ 531

Query: 623 VLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFN 682
           VL D+++E KE  L+ HSEK+AIA+GLI       I IVKNLRVC +CH   KL+SK++N
Sbjct: 532 VLLDIEDEGKESLLNLHSEKMAIAFGLIHINKSAPIHIVKNLRVCCDCHCFMKLVSKVYN 591

Query: 683 REIIARDRNRFHHFKDGNCSCNDYW 707
           R+II RD+NRFHHF++G CSCN+YW
Sbjct: 592 RQIIMRDQNRFHHFENGCCSCNEYW 616


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 268/685 (39%), Positives = 424/685 (61%), Gaps = 9/685 (1%)

Query: 27  LLQNQPSLAL-LSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSY 82
           ++ N+ S+++ L+ C  +Q     +++H  ++K GL   QF+ + L+++   S  G++  
Sbjct: 179 IMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDM--YSKAGEIEG 236

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           A+ VF+ I  P+ V WN II G  L     +A+     M  SG  PN +T    LK+CA 
Sbjct: 237 AVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAA 296

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
           +     G+Q+H+ ++K+   SD F    L++MY++   ++ AR  ++    +D +++ AL
Sbjct: 297 MGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNAL 356

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
           I+GY+  G   DA  LF +M   + +F  N++T+ TVL + A + ++++   + ++    
Sbjct: 357 ISGYSQCGDHLDAVSLFSKMFSEDIDF--NQTTLSTVLKSVASLQAIKVCKQIHTISIKS 414

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
           G+ S+ +V N+L+D Y KC  + +A  +FE     D++++  MI  Y+   D +EAL L+
Sbjct: 415 GIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLY 474

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
            QM  ++I+P+     S+L ACA L A + GK +H +  K    + ++    SL++MYAK
Sbjct: 475 LQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIK-FGFMCDIFASNSLVNMYAK 533

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
           CG+I+ A++ F  +  + + SW+AMI G A HG   +AL LF++M+ +G+ P+ IT V V
Sbjct: 534 CGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSV 593

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
           L ACNHAGL++ G+QYF  M   + I P  +HY CM+DLLGR+G  +EA  L+ ++  + 
Sbjct: 594 LCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEA 653

Query: 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562
           D  +W +LLGA R+H  +ELG+  AK L +LEPE  G +VLL+N+YA AG W++VA +R 
Sbjct: 654 DGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRK 713

Query: 563 RLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSE 622
            + D  +KK PG S IE+   V+ F+VGD+ H +S  IY  LD++  LL K+G+      
Sbjct: 714 FMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSDEIYAKLDQLGDLLSKAGYSSIVEI 773

Query: 623 VLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFN 682
            ++++D+  KE  L HHSEKLA+A+GLI+T PG  IR+ KNLR+C +CH+  K + KI +
Sbjct: 774 DIHNVDKSEKEKLLYHHSEKLAVAFGLIATPPGGPIRVKKNLRICVDCHTFFKFVCKIVS 833

Query: 683 REIIARDRNRFHHFKDGNCSCNDYW 707
           REII RD NRFHHFKDG+CSC DYW
Sbjct: 834 REIIVRDINRFHHFKDGSCSCGDYW 858



 Score =  222 bits (565), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 144/489 (29%), Positives = 250/489 (51%), Gaps = 14/489 (2%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ++L  C+  +++   ++VH   + TG  +  F  + L+ + A     D S  L  F  I 
Sbjct: 87  SVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRL--FGGIV 144

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           E N V WN +   +  S     A+  +  M+ SG +PN ++   IL +CA +     G++
Sbjct: 145 ERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRK 204

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IH  +LK+GL+ D F   +L++MY++ GE+E A  VF   +  D VS+ A+I G      
Sbjct: 205 IHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDC 264

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
            D A  L DEM  +     PN  T+ + L ACA MG  ELG  + S +      S+L   
Sbjct: 265 NDLALMLLDEM--KGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAA 322

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
             L+DMYSKC  +  AR  ++S+ K+D+I+WN +I GY+   D+ +A+ LF +M   +I+
Sbjct: 323 VGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDID 382

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
            N  T  +VL + A L A+ + K IH  I       ++  +  SL+D Y KC +I  A +
Sbjct: 383 FNQTTLSTVLKSVASLQAIKVCKQIHT-ISIKSGIYSDFYVINSLLDTYGKCNHIDEASK 441

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           +F+   ++ L ++ +MI+  + +G  ++AL L+ +M    ++PD      +L+AC +   
Sbjct: 442 IFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSA 501

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI--WTS 509
            + G+Q     I+ +     +     +V++  + G  ++A+     +   P+  I  W++
Sbjct: 502 YEQGKQLHVHAIK-FGFMCDIFASNSLVNMYAKCGSIEDADRAFSEI---PNRGIVSWSA 557

Query: 510 LLGACRVHG 518
           ++G    HG
Sbjct: 558 MIGGYAQHG 566



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 161/556 (28%), Positives = 262/556 (47%), Gaps = 39/556 (7%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSL 107
           ++H+ +IK G        + L+ +   S      YA  + +   E + V W++++ G+  
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTL--YSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQ 59

Query: 108 SSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFV 167
           +     A+  +  M L G   N +TFP +LK+C+    ++ G+++H   +  G ESD FV
Sbjct: 60  NGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFV 119

Query: 168 HTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREE 227
             +L+ MYA+ G L+ +R +F     R+ VS+ AL + Y       +A  LF EM     
Sbjct: 120 ANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMV--RS 177

Query: 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA 287
             +PNE ++  +L+ACA +   +LG  +  L+   GL  +    NAL+DMYSK G++  A
Sbjct: 178 GIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGA 237

Query: 288 RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347
             +F+ I   DV+SWN +I G         ALML  +M  S   PN  T  S L ACA +
Sbjct: 238 VAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAM 297

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
           G  +LG+ +H+ + K     +++     L+DMY+KC  +  A + +D M  K + +WNA+
Sbjct: 298 GFKELGRQLHSSLIKMDAH-SDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNAL 356

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD-- 465
           ISG +  G    A+SLFS+M  E +  +  T   VL +      + + +Q     I+   
Sbjct: 357 ISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGI 416

Query: 466 ----YKISPKLQHYG------------------------CMVDLLGRAGLFDEAEALLKT 497
               Y I+  L  YG                         M+    + G  +EA  L   
Sbjct: 417 YSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQ 476

Query: 498 ME---MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE-NPGAYVLLSNMYAGAGR 553
           M+   +KPD  I +SLL AC      E G+ +  H ++     +  A   L NMYA  G 
Sbjct: 477 MQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGS 536

Query: 554 WDDVATIRTRLNDKGM 569
            +D     + + ++G+
Sbjct: 537 IEDADRAFSEIPNRGI 552



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 141/455 (30%), Positives = 231/455 (50%), Gaps = 28/455 (6%)

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           ++HAH++K G   DP +   L+ +Y++      AR + ++SS  D VS+++L++GY   G
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
           ++++A  +F+EM +       NE T  +VL AC+    L +G  V  +    G  S+  V
Sbjct: 62  FVEEALLVFNEMCLL--GVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFV 119

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            N L+ MY+KCG L  +R LF  I +R+V+SWN +   Y  +    EA+ LF++M++S I
Sbjct: 120 ANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGI 179

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
            PN+ +   +L ACA L   DLG+ IH  + K    L+  S   +L+DMY+K G I+ A 
Sbjct: 180 MPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSA-NALVDMYSKAGEIEGAV 238

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
            VF  + +  + SWNA+I+G  +H   D AL L   M G G +P+  T    L AC   G
Sbjct: 239 AVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMG 298

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
             ++GRQ  +++I+    S      G +VD+  +  + D+A     +M  K D   W +L
Sbjct: 299 FKELGRQLHSSLIKMDAHSDLFAAVG-LVDMYSKCEMMDDARRAYDSMP-KKDIIAWNAL 356

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
                + G  + G+    HL         A  L S M++     +D+   +T L+   +K
Sbjct: 357 -----ISGYSQCGD----HL--------DAVSLFSKMFS-----EDIDFNQTTLSTV-LK 393

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLD 605
            V    +I+V   +H   +   ++     I  +LD
Sbjct: 394 SVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLD 428


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  516 bits (1330), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 284/709 (40%), Positives = 398/709 (56%), Gaps = 67/709 (9%)

Query: 63  FALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI 122
           F  + L+ + A S  G L+ A  VF  + E + V W  ++ G +       AIK ++ M+
Sbjct: 97  FTWNSLLSLYAKS--GRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMV 154

Query: 123 LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELE 182
             G  P  +T   +L SCA   A   G+++H+ V+KLGL S   V  S++NMY + G+ E
Sbjct: 155 TDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAE 214

Query: 183 SARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE---------------- 226
           +AR VF +   R   S+ A+++  A  G +D A  LF+ MP R                 
Sbjct: 215 TARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGL 274

Query: 227 --------------ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
                             P+E T+ +VLSACA++G + +G  V + I    +     VTN
Sbjct: 275 NAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTN 334

Query: 273 ALIDMYSKCG---------------------------------DLVKARDLFESIEKRDV 299
           ALI MY+K G                                 D+  AR++F+ +  RDV
Sbjct: 335 ALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDV 394

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
           ++W  MI GY       EA+ LFR M++S  EPN  T  +VL  CA L  L+ GK IH  
Sbjct: 395 VAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCK 454

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-KTLASWNAMISGLAMHGKAD 418
             ++ Q+ ++ S+  S++ MYA+ G++  A +VFD + + K   +W +MI  LA HG  +
Sbjct: 455 AIRSLQEQSS-SVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGE 513

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478
            A+ LF  M+  G++PD ITFVGVLSAC H G +D G++YF  +   + I P++ HY CM
Sbjct: 514 DAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACM 573

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
           VDLL RAGLF EA+  ++ M ++PDA  W SLL ACRVH   +L E  A+ LL ++P N 
Sbjct: 574 VDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNS 633

Query: 539 GAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSK 598
           GAY  LSN+Y+  GRW+D A I  R  DK +KK  G S   +G+ VH F   D +HPQ  
Sbjct: 634 GAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHPQRD 693

Query: 599 HIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTI 658
            +Y    ++   ++K+GFVPD   VL+D+D+E KE  LS HSEKLAIA+GL+ST   TT+
Sbjct: 694 TVYRTAAKMWDDIKKAGFVPDLQSVLHDVDDELKEEMLSRHSEKLAIAFGLVSTPEKTTL 753

Query: 659 RIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           RI+KNLRVC +CH+A K ISK+ +REII RD  RFHHFKDG CSC DYW
Sbjct: 754 RIMKNLRVCNDCHTAIKFISKVADREIILRDATRFHHFKDGFCSCKDYW 802



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 184/435 (42%), Gaps = 115/435 (26%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           +L+ C   +    G+ IHA  +K GL +  ++  +L++ YA                   
Sbjct: 29  LLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGG----------- 77

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
                             +AR+LFDE+P  + N                         W 
Sbjct: 78  ---------------GFREARRLFDEIPAAQRNVF----------------------TW- 99

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
                           N+L+ +Y+K G L  AR +F  + +RD +SW VM+ G      +
Sbjct: 100 ----------------NSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRF 143

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
            EA+ +F  M+   + P   T  +VL +CA   A  +G+ +H+++ K     + V +  S
Sbjct: 144 GEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLS-SCVPVANS 202

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSL------------ 423
           +++MY KCG+ + A  VF+ M  ++++SWNAM+S  A  G+ D ALSL            
Sbjct: 203 VLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSW 262

Query: 424 -------------------FSRMIG-EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
                              FSRM+    + PD+ T   VLSAC + G++ IG+Q     +
Sbjct: 263 NAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQ-----V 317

Query: 464 QDYKISPKLQHYG----CMVDLLGRAGLFDEAEALLKTMEMKPDAAI-WTSLLGACRVHG 518
             Y +  ++ + G     ++ +  ++G  + A  +++   M     I +T+LL      G
Sbjct: 318 HAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALL-----EG 372

Query: 519 RLELGESVAKHLLEL 533
            ++LG+   KH  E+
Sbjct: 373 YVKLGD--MKHAREM 385



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 146/291 (50%), Gaps = 9/291 (3%)

Query: 21  SDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDL 80
           S  PY        +++ +K  +++N + V  Q +   L+   F  + L+E       GD+
Sbjct: 324 SRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISF--TALLE--GYVKLGDM 379

Query: 81  SYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSC 140
            +A  +F+ +   + V W  +I G+  +     A++ +  MI SG  PN+YT   +L  C
Sbjct: 380 KHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVC 439

Query: 141 AKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-DAVSY 199
           A ++ +  GKQIH   ++   E    V  S++ MYA++G L  AR VF++   R + V++
Sbjct: 440 ASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTW 499

Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSL 258
           T++I   A  G  +DA  LF+EM        P+  T V VLSAC H+G ++ G  +   L
Sbjct: 500 TSMIVALAQHGLGEDAVGLFEEML--RVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQL 557

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGG 308
            + HG+   +     ++D+ ++ G   +A++  + +  + D I+W  ++  
Sbjct: 558 QDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSA 608


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  516 bits (1330), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 264/711 (37%), Positives = 426/711 (59%), Gaps = 43/711 (6%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           +++L  C+++   +++H+++  +GL + Q   + L+ + A   FG +  A  +F++++  
Sbjct: 114 VSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYA--RFGSVGDAKRMFQSLQTR 171

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           ++  WN +I  HS S     A++ +  M      PN+ T+  ++   +    + EG++IH
Sbjct: 172 DETSWNAVILAHSQSGDWSGALRIFKEMKCD-VKPNSTTYINVISGFSTPEVLPEGRKIH 230

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
           A ++  G ++D  V T+LINMY + G    AR VF+K   RD VS+  +I  Y   G   
Sbjct: 231 AEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFH 290

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           +A +L+ ++ +  E F   ++T V++L AC+ + +L  G  V S I   GL S + V  A
Sbjct: 291 EALELYQKLDM--EGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATA 348

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA--------------- 318
           L++MY+KCG L +AR +F +++ RD ++W+ +IG Y      K+A               
Sbjct: 349 LVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDT 408

Query: 319 -------------------LMLFRQML-QSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
                              + +FR+M   + ++P+ VTF++VL ACA LG L   K +HA
Sbjct: 409 ISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHA 468

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKAD 418
            I ++  + +NV +  +LI+MYA+CG+++ AE++F     KT+ SW AM++  + +G+  
Sbjct: 469 QISESELE-SNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYA 527

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478
           +AL LF  M  EG++PDD+T+  +L  C H G L+ G +YF  M + + ++P   H+  M
Sbjct: 528 EALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAM 587

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
           VDLLGR+G   +A+ LL++M  +PD   W + L ACR+HG+LELGE+ A+ + EL+P + 
Sbjct: 588 VDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSST 647

Query: 539 GAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSK 598
             Y+ +SN+YA  G W+ VA++R ++ ++G+KK+PG S IEV   +HEF  G K HP++ 
Sbjct: 648 APYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTD 707

Query: 599 HIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTK-PGTT 657
            I E L  +  L+  +G+VPDT  VL+D+ E  KE  L +HSEK+AIA+GL+S++  G  
Sbjct: 708 EICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEP 767

Query: 658 IRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHF-KDGNCSCNDYW 707
           IR+VKNLRVC +CH+ATK I++I  R+II RD NRFH F  DG CSC DYW
Sbjct: 768 IRVVKNLRVCSDCHTATKFIARIAGRDIIVRDCNRFHRFSSDGKCSCGDYW 818



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 209/393 (53%), Gaps = 11/393 (2%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P+  TF  +L SC+    + EG+ +H  +     E D  V  +LI+MY +   L  AR V
Sbjct: 5   PDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64

Query: 188 FNKSSLR--DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH 245
           F     R  + VS+ A+I  YA  G+  +A  L+  M +  +    +  T V+VL AC+ 
Sbjct: 65  FESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNL--QGLGTDHVTFVSVLGACS- 121

Query: 246 MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVM 305
             SL  G  + + +   GL S   + NAL+ MY++ G +  A+ +F+S++ RD  SWN +
Sbjct: 122 --SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAV 179

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365
           I  ++ + D+  AL +F++M + +++PN  T+++V+   +    L  G+ IHA I  N  
Sbjct: 180 ILAHSQSGDWSGALRIFKEM-KCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGF 238

Query: 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
             + V + T+LI+MY KCG+   A +VFD M  + + SWN MI    ++G   +AL L+ 
Sbjct: 239 DTDLV-VATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQ 297

Query: 426 RMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485
           ++  EG +    TFV +L AC+    L  GR   ++ I +  +  ++     +V++  + 
Sbjct: 298 KLDMEGFKRTKATFVSILGACSSVKALAQGR-LVHSHILERGLDSEVAVATALVNMYAKC 356

Query: 486 GLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           G  +EA  +   M+ + DA  W++L+GA   +G
Sbjct: 357 GSLEEARKVFNAMKNR-DAVAWSTLIGAYASNG 388



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 101/184 (54%), Gaps = 10/184 (5%)

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           +P++VTFL+VL +C+  G +  G+ +H  I  +  + + + +  +LI MY KC ++  A 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTM-VGNALISMYGKCDSLVDAR 62

Query: 391 QVFDGMGY--KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
            VF+ M +  + + SWNAMI+  A +G + +AL L+ RM  +GL  D +TFV VL AC+ 
Sbjct: 63  SVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS 122

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYG-CMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
              L  GR+  N +   Y      Q     +V +  R G   +A+ + ++++ + D   W
Sbjct: 123 ---LAQGREIHNRVF--YSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTR-DETSW 176

Query: 508 TSLL 511
            +++
Sbjct: 177 NAVI 180


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  516 bits (1330), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 254/574 (44%), Positives = 378/574 (65%), Gaps = 6/574 (1%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           +LK C  ++ ++EGK IHA +L      D  +  +L+N+YA+ G+L  AR +F++ S RD
Sbjct: 21  LLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRD 80

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL--GN 253
            V++TALITGY+      DA  L  EM        PN+ T+ ++L A + +GS ++  G 
Sbjct: 81  VVTWTALITGYSQHDRPQDALLLLPEML--RIGLKPNQFTLASLLKAASGVGSTDVLQGR 138

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTS 313
            +  L   +G  SN++V+ A++DMY++C  L +A+ +F+ +  ++ +SWN +I GY    
Sbjct: 139 QLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKG 198

Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
              +A  LF  ML+ N++P   T+ SVL ACA +G+L+ GKW+HA + K  +KL    + 
Sbjct: 199 QGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAF-VG 257

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
            +L+DMYAK G+I+ A++VFD +  + + SWN+M++G + HG    AL  F  M+   + 
Sbjct: 258 NTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIA 317

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
           P+DITF+ VL+AC+HAGLLD GR YF+ M++ Y + P++ HY  MVDLLGRAG  D A  
Sbjct: 318 PNDITFLCVLTACSHAGLLDEGRHYFD-MMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQ 376

Query: 494 LLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGR 553
            +  M +KP AA+W +LLGACR+H  +ELG   A+ + EL+   PG +VLL N+YA AGR
Sbjct: 377 FISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGR 436

Query: 554 WDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEK 613
           W+D A +R  + + G+KK P CS +E+ + VH F+  D  HPQ + I+ M ++I   +++
Sbjct: 437 WNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDKIKE 496

Query: 614 SGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSA 673
            G+VPD+S VL  MD++ +E  L +HSEKLA+A+ L++T PG+TIRI KN+R+CG+CHSA
Sbjct: 497 IGYVPDSSHVLLCMDQQEREAKLQYHSEKLALAFALLNTPPGSTIRIKKNIRICGDCHSA 556

Query: 674 TKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            K +SK+  REII RD NRFHHF DG CSC DYW
Sbjct: 557 FKFVSKLVEREIIVRDTNRFHHFCDGACSCEDYW 590



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 134/387 (34%), Positives = 214/387 (55%), Gaps = 15/387 (3%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF---GDLSYALLVFETIRE 92
           LL +CT++  + +   +II   L N++F    +++   ++ +   GDL YA  +F+ +  
Sbjct: 21  LLKRCTHLNKLNE--GKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSS 78

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA--ISEGK 150
            + V W  +I G+S    P  A+     M+  G  PN +T   +LK+ + + +  + +G+
Sbjct: 79  RDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGR 138

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           Q+H   L+ G +S+ +V  ++++MYA+   LE A+L+F+    ++ VS+ ALI GYA +G
Sbjct: 139 QLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKG 198

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
             D A  LF  M    EN  P   T  +VL ACA MGSLE G WV +L+   G      V
Sbjct: 199 QGDKAFCLFSNML--RENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFV 256

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            N L+DMY+K G +  A+ +F+ + KRDV+SWN M+ GY+     K AL  F +ML++ I
Sbjct: 257 GNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRI 316

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYID--KNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            PND+TFL VL AC++ G LD G+    Y D  K +     +S + +++D+  + G++  
Sbjct: 317 APNDITFLCVLTACSHAGLLDEGR---HYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDR 373

Query: 389 AEQVFDGMGYK-TLASWNAMISGLAMH 414
           A Q    M  K T A W A++    MH
Sbjct: 374 AIQFISEMPIKPTAAVWGALLGACRMH 400



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/285 (33%), Positives = 160/285 (56%), Gaps = 9/285 (3%)

Query: 238 TVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR 297
           T+L  C H+  L  G  + +L+       +L + N L+++Y+KCGDLV AR LF+ +  R
Sbjct: 20  TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR 79

Query: 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL--GKW 355
           DV++W  +I GY+     ++AL+L  +ML+  ++PN  T  S+L A + +G+ D+  G+ 
Sbjct: 80  DVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQ 139

Query: 356 IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHG 415
           +H    + +   +NV +  +++DMYA+C +++ A+ +FD M  K   SWNA+I+G A  G
Sbjct: 140 LHGLCLR-YGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKG 198

Query: 416 KADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY 475
           + DKA  LFS M+ E ++P   T+  VL AC   G L+ G+     MI   K   KL  +
Sbjct: 199 QGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMI---KWGEKLVAF 255

Query: 476 --GCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
               ++D+  ++G  ++A+ +   +  K D   W S+L     HG
Sbjct: 256 VGNTLLDMYAKSGSIEDAKKVFDRLA-KRDVVSWNSMLTGYSQHG 299



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 153/312 (49%), Gaps = 19/312 (6%)

Query: 4   PPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKC------TNMQNIKQVHSQIIKTG 57
           P  +L L P +L           L  NQ +LA L K       T++   +Q+H   ++ G
Sbjct: 97  PQDALLLLPEMLRIG--------LKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYG 148

Query: 58  LHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKF 117
             +  +    ++++ A      L  A L+F+ +   N+V WN +I G++       A   
Sbjct: 149 YDSNVYVSCAILDMYARCHH--LEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCL 206

Query: 118 YVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ 177
           +  M+     P  +T+  +L +CA + ++ +GK +HA ++K G +   FV  +L++MYA+
Sbjct: 207 FSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAK 266

Query: 178 NGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVV 237
           +G +E A+ VF++ + RD VS+ +++TGY+  G    A Q F+EM        PN+ T +
Sbjct: 267 SGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEML--RTRIAPNDITFL 324

Query: 238 TVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-K 296
            VL+AC+H G L+ G     +++ + +   +     ++D+  + G L +A      +  K
Sbjct: 325 CVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIK 384

Query: 297 RDVISWNVMIGG 308
                W  ++G 
Sbjct: 385 PTAAVWGALLGA 396


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  516 bits (1330), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 262/662 (39%), Positives = 405/662 (61%), Gaps = 6/662 (0%)

Query: 47   KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
            KQ+H  ++++GL       + LI +   +  G +S A  VF  + E + + WN +I G +
Sbjct: 955  KQIHGIVMRSGLDQVVSVGNCLINMYVKA--GSVSRARSVFGQMNEVDLISWNTMISGCT 1012

Query: 107  LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA-ISEGKQIHAHVLKLGLESDP 165
            LS     ++  +V ++    +P+ +T   +L++C+ +        QIHA  +K G+  D 
Sbjct: 1013 LSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDS 1072

Query: 166  FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
            FV T+LI++Y++ G++E A  +F      D  S+ A++ GY   G    A +L+  + ++
Sbjct: 1073 FVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLY--ILMQ 1130

Query: 226  EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
            E     ++ T+V    A   +  L+ G  + +++   G   +L VT+ ++DMY KCG++ 
Sbjct: 1131 ESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEME 1190

Query: 286  KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
             AR +F  I   D ++W  MI G       + AL  + QM  S ++P++ TF +++ AC+
Sbjct: 1191 SARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACS 1250

Query: 346  YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
             L AL+ G+ IHA I K +   +   + TSL+DMYAKCGNI+ A  +F     + +ASWN
Sbjct: 1251 LLTALEQGRQIHANIVKLNCAFDPFVM-TSLVDMYAKCGNIEDARGLFKRTNTRRIASWN 1309

Query: 406  AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
            AMI GLA HG A +AL  F  M   G+ PD +TF+GVLSAC+H+GL+    + F +M ++
Sbjct: 1310 AMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKN 1369

Query: 466  YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
            Y I P+++HY C+VD L RAG  +EAE ++ +M  +  A+++ +LL ACRV    E G+ 
Sbjct: 1370 YGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKR 1429

Query: 526  VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVH 585
            VA+ LL LEP +  AYVLLSN+YA A +W++VA+ R  +    +KK PG S +++ + VH
Sbjct: 1430 VAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVH 1489

Query: 586  EFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAI 645
             F+ GD+ H ++  IY  ++ I   + + G+VPDT   L D++EE KE +L +HSEKLAI
Sbjct: 1490 LFVAGDRSHEETDVIYNKVEYIMKRIREEGYVPDTDFALVDVEEEDKECSLYYHSEKLAI 1549

Query: 646  AYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCND 705
            AYGL+ T P TT+R++KNLRVCG+CHSA K ISK+F REI+ RD NRFHHF++G CSC D
Sbjct: 1550 AYGLMKTPPSTTLRVIKNLRVCGDCHSAIKYISKVFKREIVLRDANRFHHFRNGICSCGD 1609

Query: 706  YW 707
            YW
Sbjct: 1610 YW 1611



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 157/642 (24%), Positives = 273/642 (42%), Gaps = 89/642 (13%)

Query: 47   KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
            + +H   +K GL    F    L+ I A   FG +  A ++F+ +   + V+WN +++ + 
Sbjct: 780  ESLHGYAVKIGLQWDVFVAGALVNIYA--KFGLIREARVLFDGMAVRDVVLWNVMMKAYV 837

Query: 107  LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
             +     A+  +     +GF P+  T   + +       I E KQ  A+  KL       
Sbjct: 838  DTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKLF------ 891

Query: 167  VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
                   MY  +G   S  +V+NK+           ++ +  RG   +A   F +M    
Sbjct: 892  -------MYDDDG---SDVIVWNKA-----------LSRFLQRGEAWEAVDCFVDMI--N 928

Query: 227  ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
                 +  T V +L+  A +  LELG  +  ++   GL   + V N LI+MY K G + +
Sbjct: 929  SRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSR 988

Query: 287  ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
            AR +F  + + D+ISWN MI G T +   + ++ +F  +L+ ++ P+  T  SVL AC+ 
Sbjct: 989  ARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSS 1048

Query: 347  L-GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
            L G   L   IHA   K    L++  + T+LID+Y+K G ++ AE +F       LASWN
Sbjct: 1049 LEGGYYLATQIHACAMKAGVVLDSF-VSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWN 1107

Query: 406  AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFV------------------------- 440
            A++ G  + G   KAL L+  M   G + D IT V                         
Sbjct: 1108 AIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKR 1167

Query: 441  ----------GVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
                      GVL      G ++  R+ F+ +     ++      GC+ +      LF  
Sbjct: 1168 GFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTY 1227

Query: 491  AEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE-NPGAYVLLSNMYA 549
             +  ++  +++PD   + +L+ AC +   LE G  +  ++++L    +P     L +MYA
Sbjct: 1228 HQ--MRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYA 1285

Query: 550  GAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVH----------EFLVGDKVHPQSKH 599
              G  +D   +  R N    +++   +++ VG   H          +++    V P    
Sbjct: 1286 KCGNIEDARGLFKRTN---TRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVT 1342

Query: 600  IYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK-EGALSHHS 640
               +L    +    SG V +  E  Y M + +  E  + H+S
Sbjct: 1343 FIGVL----SACSHSGLVSEAYENFYSMQKNYGIEPEIEHYS 1380



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 133/521 (25%), Positives = 229/521 (43%), Gaps = 62/521 (11%)

Query: 47   KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ--VIWNNIIRG 104
            K+ H++I+ +G H  +F  + LI + A    G LS A  +F+T  + N+  V WN I+  
Sbjct: 676  KRAHARILTSGHHPDRFVTNNLITMYA--KCGSLSSARKLFDTTPDTNRDLVTWNAILSA 733

Query: 105  HSLSSSPVVAIKFYVRMILSGFVPNT-YTFPFILKSCAKISAISEGKQIHAHVLKLGLES 163
             +  +          R++    V  T +T   + K C   ++ S  + +H + +K+GL+ 
Sbjct: 734  LAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQW 793

Query: 164  DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
            D FV  +L+N+YA+ G +  AR++F+  ++RD V +  ++  Y       +A  LF E  
Sbjct: 794  DVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSE-- 851

Query: 224  IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
                 F P++ T+ T+         ++    +  L +     + L        MY   G 
Sbjct: 852  FHRTGFRPDDVTLRTLSRV------VKCKKNILELKQFKAYATKLF-------MYDDDGS 898

Query: 284  LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
                          DVI WN  +  +    +  EA+  F  M+ S +  + +TF+ +L  
Sbjct: 899  --------------DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTV 944

Query: 344  CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
             A L  L+LGK IH  + ++      VS+   LI+MY K G++  A  VF  M    L S
Sbjct: 945  VAGLNCLELGKQIHGIVMRSGLD-QVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLIS 1003

Query: 404  WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN------------HAGL 451
            WN MISG  + G  + ++ +F  ++ + L PD  T   VL AC+            HA  
Sbjct: 1004 WNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACA 1063

Query: 452  LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
            +  G      ++ D  +S  L      +D+  + G  +EAE L    +   D A W +++
Sbjct: 1064 MKAG------VVLDSFVSTAL------IDVYSKRGKMEEAEFLFVNQD-GFDLASWNAIM 1110

Query: 512  GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552
                V G  +  +++  ++L  E       + L N    AG
Sbjct: 1111 HGYIVSG--DFPKALRLYILMQESGERSDQITLVNAAKAAG 1149



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 178/402 (44%), Gaps = 39/402 (9%)

Query: 136  ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKS--SL 193
            IL+     S +S GK+ HA +L  G   D FV  +LI MYA+ G L SAR +F+ +  + 
Sbjct: 662  ILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTN 721

Query: 194  RDAVSYTALITGYASRG-YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
            RD V++ A+++  A+      D   LF    +R         T+  V   C    S    
Sbjct: 722  RDLVTWNAILSALAAHADKSHDGFHLF--RLLRRSVVSTTRHTLAPVFKMCLLSASPSAS 779

Query: 253  NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
              +       GL  ++ V  AL+++Y+K G + +AR LF+ +  RDV+ WNVM+  Y  T
Sbjct: 780  ESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDT 839

Query: 313  SDYKEALMLFRQMLQSNIEPNDVTF--LSVLPACAYLGALDLGKWIHAYIDKNHQKLNNV 370
                EA++LF +  ++   P+DVT   LS +  C                 KN  +L   
Sbjct: 840  CLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKC----------------KKNILELKQF 883

Query: 371  SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE 430
              + + + MY   G+               +  WN  +S     G+A +A+  F  MI  
Sbjct: 884  KAYATKLFMYDDDGS--------------DVIVWNKALSRFLQRGEAWEAVDCFVDMINS 929

Query: 431  GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
             +  D +TFV +L+       L++G+Q  + ++    +   +    C++++  +AG    
Sbjct: 930  RVACDGLTFVVMLTVVAGLNCLELGKQ-IHGIVMRSGLDQVVSVGNCLINMYVKAGSVSR 988

Query: 491  AEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
            A ++   M  + D   W +++  C + G  E    +  HLL 
Sbjct: 989  ARSVFGQMN-EVDLISWNTMISGCTLSGLEECSVGMFVHLLR 1029



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 238 TVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI--E 295
           ++L        L LG    + I   G   +  VTN LI MY+KCG L  AR LF++    
Sbjct: 661 SILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDT 720

Query: 296 KRDVISWNVMIGGY-THTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGK 354
            RD+++WN ++     H     +   LFR + +S +     T   V   C    +    +
Sbjct: 721 NRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASE 780

Query: 355 WIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMH 414
            +H Y  K   +  +V +  +L+++YAK G I+ A  +FDGM  + +  WN M+      
Sbjct: 781 SLHGYAVKIGLQW-DVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDT 839

Query: 415 GKADKALSLFSRMIGEGLQPDDITF 439
               +A+ LFS     G +PDD+T 
Sbjct: 840 CLEYEAMLLFSEFHRTGFRPDDVTL 864



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 73/150 (48%), Gaps = 3/150 (2%)

Query: 41   TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNN 100
            T ++  +Q+H+ I+K       F ++ L+++ A    G++  A  +F+         WN 
Sbjct: 1253 TALEQGRQIHANIVKLNCAFDPFVMTSLVDMYA--KCGNIEDARGLFKRTNTRRIASWNA 1310

Query: 101  IIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG-KQIHAHVLKL 159
            +I G +   +   A++F+  M   G +P+  TF  +L +C+    +SE  +  ++     
Sbjct: 1311 MIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNY 1370

Query: 160  GLESDPFVHTSLINMYAQNGELESARLVFN 189
            G+E +   ++ L++  ++ G +E A  V +
Sbjct: 1371 GIEPEIEHYSCLVDALSRAGRIEEAEKVIS 1400


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  516 bits (1330), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 275/670 (41%), Positives = 402/670 (60%), Gaps = 23/670 (3%)

Query: 46  IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           ++ +H+  + +G     F  S L ++      G+   A  VF+ +  P+ V+WN ++ G 
Sbjct: 142 LRPLHALAVASGFAADNFVASALAKLYFTLSRGN--DARKVFDAVPSPDTVLWNTLLAGL 199

Query: 106 SLSSSPVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESD 164
           S S     A++ +VRM  +G V P++ T   +L + A+++  + G+ +HA   K GL   
Sbjct: 200 SGSE----ALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQH 255

Query: 165 PFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDE--- 221
             V T LI++YA+ G++E AR +F++    D V+Y ALI+GY+  G +  + +LF E   
Sbjct: 256 EHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVG 315

Query: 222 MPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC 281
           M +R     P+ ST+V ++   +  G   L   + + +   GL +N  V+ AL  +Y + 
Sbjct: 316 MGLR-----PSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRF 370

Query: 282 GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
            D+  AR  F+++ ++ + SWN MI GY      + A+ LF+QM   N+ PN +T  S L
Sbjct: 371 NDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSAL 430

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
            ACA LGAL LGKW+H  I     +LN V + T+LIDMY KCG+I  A  +FD M  K +
Sbjct: 431 SACAQLGALSLGKWVHKIIANEKLELN-VYVMTALIDMYVKCGSIAEARCIFDSMDNKNV 489

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
            SWN MISG  +HG+  +AL L+  M+   L P   TF+ VL AC+H GL+  G   F +
Sbjct: 490 VSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRS 549

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA----IWTSLLGACRVH 517
           M  DY I+P ++H  CMVDLLGRAG   EA  L+      P +A    IW +LLGAC VH
Sbjct: 550 MTSDYGITPGIEHCTCMVDLLGRAGQLKEAFELISEF---PKSAVGPGIWGALLGACMVH 606

Query: 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577
              +L +  ++ L ELEPEN G YVLLSN+Y    ++ + A +R     + + K PGC+ 
Sbjct: 607 KDGDLAKLASQKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTL 666

Query: 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALS 637
           IE+G   H F+ GD+ HPQS  IY  L+++ A + ++G+ PDT   LYD++EE KE  + 
Sbjct: 667 IEIGDRPHVFMAGDRAHPQSDAIYLYLEKLTAKMIEAGYRPDTEAALYDVEEEEKEHMVK 726

Query: 638 HHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFK 697
            HSEKLAIA+GL++T+PGT IRI+KNLRVC +CH+ATK+ISK+  R I+ RD +RFHHF+
Sbjct: 727 VHSEKLAIAFGLLNTEPGTEIRIIKNLRVCLDCHNATKIISKVTQRLIVVRDASRFHHFR 786

Query: 698 DGNCSCNDYW 707
           DG CSC DYW
Sbjct: 787 DGVCSCGDYW 796


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 286/706 (40%), Positives = 418/706 (59%), Gaps = 30/706 (4%)

Query: 10  LSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLI 69
           LS S L     + PP           ++  C N+ + ++VH  ++K G     +  +  I
Sbjct: 133 LSTSFLQSDHYTFPP-----------VIRACGNLDDGRKVHCLVLKLGFECDVYIAASFI 181

Query: 70  EICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPN 129
                S FG +S A  +F+ +   +   WN +I G  L+     A++ +  M       +
Sbjct: 182 HF--YSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMD 239

Query: 130 TYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN 189
           + T   +L  C ++  I  G  IH + +KLGLE D FV  +LINMYA+ GEL SA  +FN
Sbjct: 240 SVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFN 299

Query: 190 KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL 249
           +  +RD VS+ +L+  +        A  ++++M       VP+  T+V++ S  A     
Sbjct: 300 QMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKM--HSIGVVPDLLTLVSLASVAA----- 352

Query: 250 ELGNWVCSLIEGHGLGS-------NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
           ELGN++ S    HG  +       ++ + NA+IDMY+K G +  AR +FE +  +DVISW
Sbjct: 353 ELGNFLSSR-SIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISW 411

Query: 303 NVMIGGYTHTSDYKEALMLFRQM-LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361
           N +I GY+      EA+ ++  M   S   PN  T++S+L A + LGAL  G   H  + 
Sbjct: 412 NSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLI 471

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421
           KN    + + + T L+DMY KCG +  A  +F  + +++  SWNA+IS   +HG   KA+
Sbjct: 472 KNFLYFD-IFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAV 530

Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481
            LF  M  EG++PD ITFV +LSAC+H+GL+D G+  F  M + Y I P L+HYGCMVDL
Sbjct: 531 KLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDL 590

Query: 482 LGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541
            GRAG  ++A   +K M ++PD ++W +LLGACR+H  +EL  +V+ HLL++E EN G Y
Sbjct: 591 FGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKVESENVGYY 650

Query: 542 VLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIY 601
           VLLSN+YA  G W+ V  +R+   D+G+KK PG SSIEV   +  F  G++ HP+ + IY
Sbjct: 651 VLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIY 710

Query: 602 EMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIV 661
             L  + A ++  G+VPD + VL D++++ KE  L+ HSE+LA+A+G+IST P TT++I 
Sbjct: 711 SELRNLTAKMKSIGYVPDYNFVLQDVEDDEKENILTSHSERLAMAFGIISTPPKTTLQIF 770

Query: 662 KNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           KNLRVCG+CH+ATK ISKI  REII RD NRFHHFKDG CSC DYW
Sbjct: 771 KNLRVCGDCHNATKFISKITEREIIVRDSNRFHHFKDGVCSCGDYW 816



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 138/499 (27%), Positives = 268/499 (53%), Gaps = 14/499 (2%)

Query: 40  CTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWN 99
           CT +   KQ+H+ ++ +G   + F  +KLI   A    GD+ +A L F+ I+  +   WN
Sbjct: 53  CTKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAF--LGDIPHARLTFDQIQTKDVYTWN 110

Query: 100 NIIRGHSLSSSPVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQIHAHVLK 158
           ++I  ++       A+  +   + + F+  + YTFP ++++C     + +G+++H  VLK
Sbjct: 111 SMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGN---LDDGRKVHCLVLK 167

Query: 159 LGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQL 218
           LG E D ++  S I+ Y++ G +  A  +F+   +RD  ++ A+I+G+   G + +A ++
Sbjct: 168 LGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEV 227

Query: 219 FDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMY 278
           FDEM  R ++   +  T+ ++L  C  +  +  G  +       GL  +L V NALI+MY
Sbjct: 228 FDEM--RFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMY 285

Query: 279 SKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
           +K G+L  A  +F  ++ RD++SWN ++  +        AL ++ +M    + P+ +T +
Sbjct: 286 AKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLV 345

Query: 339 SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
           S+    A LG     + IH ++ +    L++++L  ++IDMYAK G I +A +VF+G+  
Sbjct: 346 SLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPV 405

Query: 399 KTLASWNAMISGLAMHGKADKALSLFSRM-IGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
           K + SWN++I+G + +G A++A+ ++S M    G  P+  T+V +L+A +  G L  G +
Sbjct: 406 KDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMK 465

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
               +I+++ +   +    C+VD+ G+ G   +A +L   +  +   + W +++    +H
Sbjct: 466 AHGQLIKNF-LYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVS-WNAIISCHGLH 523

Query: 518 GRLELGESVAKHLLELEPE 536
           G    G    K   E++ E
Sbjct: 524 G---YGLKAVKLFKEMQSE 539



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 185/379 (48%), Gaps = 9/379 (2%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           F  I   C K+      KQ+HA ++  G     F+   LIN YA  G++  ARL F++  
Sbjct: 46  FNRIFLYCTKVHL---AKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQ 102

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
            +D  ++ ++I+ YA  G+   A   F+E  +       +  T   V+ AC   G+L+ G
Sbjct: 103 TKDVYTWNSMISAYARIGHFHAAVDCFNEF-LSTSFLQSDHYTFPPVIRAC---GNLDDG 158

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
             V  L+   G   ++++  + I  YS+ G +  A +LF+++  RD+ +WN MI G+   
Sbjct: 159 RKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLN 218

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
               EAL +F +M   ++  + VT  S+LP C  L  +  G  IH Y  K   +  ++ +
Sbjct: 219 GKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEF-DLFV 277

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
             +LI+MYAK G +++AE +F+ M  + + SWN++++    + K   AL ++++M   G+
Sbjct: 278 CNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGV 337

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
            PD +T V + S     G     R     + +       +     ++D+  + G  D A 
Sbjct: 338 VPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSAR 397

Query: 493 ALLKTMEMKPDAAIWTSLL 511
            + + + +K D   W SL+
Sbjct: 398 KVFEGLPVK-DVISWNSLI 415



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 138/289 (47%), Gaps = 15/289 (5%)

Query: 230 VPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARD 289
           V NE   +       +   + L   + +L+   G   ++ ++  LI+ Y+  GD+  AR 
Sbjct: 37  VENEKREIDFNRIFLYCTKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARL 96

Query: 290 LFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND-VTFLSVLPACAYLG 348
            F+ I+ +DV +WN MI  Y     +  A+  F + L ++   +D  TF  V+ AC   G
Sbjct: 97  TFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC---G 153

Query: 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI 408
            LD G+ +H  + K   +  +V +  S I  Y++ G +  A  +FD M  + + +WNAMI
Sbjct: 154 NLDDGRKVHCLVLKLGFEC-DVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMI 212

Query: 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
           SG  ++GK  +AL +F  M  + +  D +T   +L  C    L DI       +I  Y I
Sbjct: 213 SGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPIC--VQLDDIIS---GVLIHVYAI 267

Query: 469 SPKLQH--YGC--MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
              L+   + C  ++++  + G    AE +   M+++ D   W SLL A
Sbjct: 268 KLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVR-DIVSWNSLLAA 315


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 256/675 (37%), Positives = 413/675 (61%), Gaps = 6/675 (0%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L++++   +++  KQ+H  +++ G    QF       I      G ++YA  +F  ++E 
Sbjct: 304 LSVVASLNHLELGKQIHGAVVRFGW--DQFVSVANSAINMYVKAGSVNYARRMFGQMKEV 361

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS-AISEGKQI 152
           + + WN +I G + S     +++ ++ ++ SG +P+ +T   +L++C+ +  +   G+Q+
Sbjct: 362 DLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQV 421

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H   LK G+  D FV T+LI++Y++ G++E A L+F+     D  S+ A++ G+      
Sbjct: 422 HTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNY 481

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
            +A +LF  M  R E    ++ T      A   +  L+ G  + +++       +L V +
Sbjct: 482 REALRLFSLMHERGEK--ADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVIS 539

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            ++DMY KCG++  AR +F  I   D ++W  +I G     + ++AL  + QM  + ++P
Sbjct: 540 GILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQP 599

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           ++ TF +++ AC+ L AL+ GK IHA I K +   +   + TSL+DMYAKCGNI+ A  +
Sbjct: 600 DEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVM-TSLVDMYAKCGNIEDAYGL 658

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F  M  +++A WNAMI GLA HG A++AL+ F+ M   G+ PD +TF+GVLSAC+H+GL 
Sbjct: 659 FRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLT 718

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
               + F++M + Y + P+++HY C+VD L RAG   EAE ++ +M  +  A ++ +LL 
Sbjct: 719 SDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLN 778

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           ACRV G  E GE VA+ L  ++P +  AYVLLSN+YA A +W++  + R  +    +KK 
Sbjct: 779 ACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKE 838

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
           PG S I++ + VH F+ GD+ H ++  IY  ++ +   +++ G+VPDT   L D++EE K
Sbjct: 839 PGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRIKEEGYVPDTEFALVDIEEEDK 898

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
           E ALS+HSEKLAIAYGL+ T P TT+R++KNLRVCG+CH+A K IS +F REI+ RD NR
Sbjct: 899 ESALSYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISNVFQREIVLRDANR 958

Query: 693 FHHFKDGNCSCNDYW 707
           FHHF+ G CSC DYW
Sbjct: 959 FHHFRSGICSCGDYW 973



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 156/641 (24%), Positives = 274/641 (42%), Gaps = 124/641 (19%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ--VIWNNIIRG 104
           K+ H+ I+ +GL+  ++  + LI + A    G L  A  +F+   + ++  V +N I+  
Sbjct: 33  KRTHAVIVTSGLNPDRYVTNNLITMYA--KCGSLFSARKLFDITPQSDRDLVTYNAILAA 90

Query: 105 HS----LSSSPVVAIKFYVRMIL--SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLK 158
           ++    L         F++  +L  S  +   +T   + K C    + S  + +  + +K
Sbjct: 91  YAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVK 150

Query: 159 LGLESDPFVHTSLINMYAQNGELESARLV------------------------------- 187
           +GL+ D FV  +L+N+YA+   +  AR++                               
Sbjct: 151 IGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGL 210

Query: 188 ---FNKSSLR-DAVSYTALITG----------------YASRGYLDD------------- 214
              F++S LR D VS   ++ G                YA++ ++ D             
Sbjct: 211 FSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLS 270

Query: 215 ----------ARQLFDEMPIREENFVPNES-TVVTVLSACAHMGSLELGNWVCSLIEGHG 263
                     A   F +M    ++ VP +S T + +LS  A +  LELG  +   +   G
Sbjct: 271 SYLQAGEGWEAVDCFRDMI---KSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFG 327

Query: 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFR 323
               + V N+ I+MY K G +  AR +F  +++ D+ISWN +I G   +   + +L LF 
Sbjct: 328 WDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFI 387

Query: 324 QMLQSNIEPNDVTFLSVLPACAYL-GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
            +L+S + P+  T  SVL AC+ L  +  +G+ +H    K    L++  + T+LID+Y+K
Sbjct: 388 DLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSF-VSTALIDVYSK 446

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
            G ++ AE +F       LASWNAM+ G  +     +AL LFS M   G + D ITF   
Sbjct: 447 GGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANA 506

Query: 443 LSACNHAGLLDIGRQYFNAMIQD------YKISPKLQHYGCMVDLLGRAGLF-------- 488
             A      L  G+Q    +I+       + IS  L  Y    ++     +F        
Sbjct: 507 AKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDD 566

Query: 489 --------------DEAEALLKTMEMK-----PDAAIWTSLLGACRVHGRLELGESVAKH 529
                         +E +AL    +M+     PD   + +L+ AC +   LE G+ +  +
Sbjct: 567 VAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHAN 626

Query: 530 LLELEPE-NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
           +++L    +P     L +MYA  G  +D   +  R+N + +
Sbjct: 627 IMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSV 667



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 173/401 (43%), Gaps = 39/401 (9%)

Query: 124 SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELES 183
           S  +P  ++   IL+     S +  GK+ HA ++  GL  D +V  +LI MYA+ G L S
Sbjct: 10  SSLLPQWFS---ILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFS 66

Query: 184 ARLVFNKS--SLRDAVSYTALITGYASRGYLDDARQLFDEMPI----REENFVPNESTVV 237
           AR +F+ +  S RD V+Y A++  YA  G L D  +  +   I    R+   +    T+ 
Sbjct: 67  ARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLS 126

Query: 238 TVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR 297
            +   C   GS      +       GL  ++ V  AL+++Y+K   + +AR LF+ +  R
Sbjct: 127 PLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVR 186

Query: 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357
           DV+ WNVM+  Y       E L LF    +S + P+ V+  ++L         +      
Sbjct: 187 DVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFE------ 240

Query: 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA 417
                  ++L  V  +               A ++F       +  WN  +S     G+ 
Sbjct: 241 -------RELEQVRAY---------------ATKLFVCDDDSDVTVWNKTLSSYLQAGEG 278

Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
            +A+  F  MI   +  D +T++ +LS       L++G+Q   A+++ +     +     
Sbjct: 279 WEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVR-FGWDQFVSVANS 337

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
            +++  +AG  + A  +   M+ + D   W +++  C   G
Sbjct: 338 AINMYVKAGSVNYARRMFGQMK-EVDLISWNTVISGCARSG 377


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 266/661 (40%), Positives = 400/661 (60%), Gaps = 6/661 (0%)

Query: 47   KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
            K++H  + K G  +    ++ LI     S  G++  A  +F+ + + + V WN++I G  
Sbjct: 573  KRIHGCVYKLGFGSYNTVVNSLIATYFKS--GEVDSAHKLFDELGDRDVVSWNSMISGCV 630

Query: 107  LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            ++     A++F+V+M++     +  T    + +CA + ++S G+ +H   +K     +  
Sbjct: 631  MNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVM 690

Query: 167  VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
             + +L++MY++ G L  A   F K   +  VS+T+LI  Y   G  DDA +LF EM    
Sbjct: 691  FNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEM--ES 748

Query: 227  ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
            +   P+  ++ +VL ACA   SL+ G  V + I  + +   L V+NAL+DMY+KCG + +
Sbjct: 749  KGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEE 808

Query: 287  ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
            A  +F  I  +D++SWN MIGGY+  S   EAL LF +M Q    P+ +T   +LPAC  
Sbjct: 809  AYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEM-QKESRPDGITMACLLPACGS 867

Query: 347  LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
            L AL++G+ IH  I +N    + + +  +LIDMY KCG++  A  +FD +  K L +W  
Sbjct: 868  LAALEIGRGIHGCILRNGYS-SELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTV 926

Query: 407  MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
            MISG  MHG  ++A++ F +M   G++PD+ITF  +L AC+H+GLL+ G  +FN+MI + 
Sbjct: 927  MISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISEC 986

Query: 467  KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
             + PKL+HY CMVDLL R G   +A  L++TM +KPDA IW +LL  CR+H  +EL E V
Sbjct: 987  NMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKV 1046

Query: 527  AKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHE 586
            A+H+ ELEP+N G YVLL+N+YA A +W++V  +R R+  +G+KK PGCS IEV      
Sbjct: 1047 AEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTT 1106

Query: 587  FLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIA 646
            F+  D  HPQ+K I+ +L+ +   ++  G  P     L +  +  KE AL  HSEKLA+A
Sbjct: 1107 FVSADTAHPQAKSIFSLLNNLRIKMKNEGHSPKMRYALINAGDMEKEVALCGHSEKLAMA 1166

Query: 647  YGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDY 706
            +G+++   G TIR+ KNLRVC +CH   K +SK   REII RD NRFHHFKDG CSC D+
Sbjct: 1167 FGILNLPSGRTIRVAKNLRVCDDCHEMAKFMSKTTRREIILRDSNRFHHFKDGFCSCRDF 1226

Query: 707  W 707
            W
Sbjct: 1227 W 1227



 Score =  232 bits (592), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 159/490 (32%), Positives = 253/490 (51%), Gaps = 17/490 (3%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L L ++   +Q  K VHS I   G+       +KL+ +      G L     +F+ I   
Sbjct: 458 LQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFM--YVSCGALREGRRIFDHILSD 515

Query: 94  NQV-IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
           N+V +WN ++  ++       +I  + +M   G   N+YTF  ILK  A +  + E K+I
Sbjct: 516 NKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRI 575

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H  V KLG  S   V  SLI  Y ++GE++SA  +F++   RD VS+ ++I+G    G+ 
Sbjct: 576 HGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFS 635

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS----NL 268
             A + F +M I       + +T+V  ++ACA++GSL LG      + G G+ +     +
Sbjct: 636 HSALEFFVQMLILRVGV--DLATLVNSVAACANVGSLSLGR----ALHGQGVKACFSREV 689

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
              N L+DMYSKCG+L  A   FE + ++ V+SW  +I  Y     Y +A+ LF +M   
Sbjct: 690 MFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESK 749

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            + P+  +  SVL ACA   +LD G+ +H YI KN+  L  + +  +L+DMYAKCG+++ 
Sbjct: 750 GVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMAL-CLPVSNALMDMYAKCGSMEE 808

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A  VF  +  K + SWN MI G + +   ++AL LF+ M  E  +PD IT   +L AC  
Sbjct: 809 AYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGS 867

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
              L+IGR     ++++   S +L     ++D+  + G    A  L   +  K D   WT
Sbjct: 868 LAALEIGRGIHGCILRN-GYSSELHVANALIDMYVKCGSLVHARLLFDMIPEK-DLITWT 925

Query: 509 SLLGACRVHG 518
            ++  C +HG
Sbjct: 926 VMISGCGMHG 935



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/382 (29%), Positives = 182/382 (47%), Gaps = 6/382 (1%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKS- 191
           +  IL+ CA+   + EGK +H+ +   G+  +  +   L+ MY   G L   R +F+   
Sbjct: 454 YSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHIL 513

Query: 192 SLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL 251
           S      +  +++ YA  G   ++  LF +M  ++     N  T   +L   A +G +  
Sbjct: 514 SDNKVFLWNLMMSEYAKIGDYRESIYLFKKM--QKLGITGNSYTFSCILKCFATLGRVGE 571

Query: 252 GNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311
              +   +   G GS   V N+LI  Y K G++  A  LF+ +  RDV+SWN MI G   
Sbjct: 572 CKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVM 631

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
                 AL  F QML   +  +  T ++ + ACA +G+L LG+ +H    K       V 
Sbjct: 632 NGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFS-REVM 690

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
              +L+DMY+KCGN+  A Q F+ MG KT+ SW ++I+     G  D A+ LF  M  +G
Sbjct: 691 FNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKG 750

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
           + PD  +   VL AC     LD GR   N  I+   ++  L     ++D+  + G  +EA
Sbjct: 751 VSPDVYSMTSVLHACACGNSLDKGRDVHN-YIRKNNMALCLPVSNALMDMYAKCGSMEEA 809

Query: 492 EALLKTMEMKPDAAIWTSLLGA 513
             +   + +K D   W +++G 
Sbjct: 810 YLVFSQIPVK-DIVSWNTMIGG 830



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 156/318 (49%), Gaps = 11/318 (3%)

Query: 238 TVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI-EK 296
           ++L  CA    L+ G  V S+I  +G+     +   L+ MY  CG L + R +F+ I   
Sbjct: 456 SILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSD 515

Query: 297 RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
             V  WN+M+  Y    DY+E++ LF++M +  I  N  TF  +L   A LG +   K I
Sbjct: 516 NKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRI 575

Query: 357 HAYIDK-NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHG 415
           H  + K      N V    SLI  Y K G + +A ++FD +G + + SWN+MISG  M+G
Sbjct: 576 HGCVYKLGFGSYNTVV--NSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNG 633

Query: 416 KADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY 475
            +  AL  F +M+   +  D  T V  ++AC + G L +GR      ++    S ++   
Sbjct: 634 FSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKAC-FSREVMFN 692

Query: 476 GCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEP 535
             ++D+  + G  ++A    + M  K   + WTSL+ A   + R  L +   +   E+E 
Sbjct: 693 NTLLDMYSKCGNLNDAIQAFEKMGQKTVVS-WTSLIAA---YVREGLYDDAIRLFYEMES 748

Query: 536 E--NPGAYVLLSNMYAGA 551
           +  +P  Y + S ++A A
Sbjct: 749 KGVSPDVYSMTSVLHACA 766



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 95/228 (41%), Gaps = 28/228 (12%)

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
           N  I  +    D + A+ L R   +S ++ N   + S+L  CA    L  GK +H+ I  
Sbjct: 422 NTKICKFCEVGDLRNAVELLRMSQKSELDLN--AYSSILQLCAEHKCLQEGKMVHSVISS 479

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG-MGYKTLASWNAMISGLAMHGKADKAL 421
           N   +  V L   L+ MY  CG ++   ++FD  +    +  WN M+S  A  G   +++
Sbjct: 480 NGIPIEGV-LGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESI 538

Query: 422 SLFSRMIGEGLQPDDITF---------VGVLSACN--HAGLLDIGRQYFNAMIQDYKISP 470
            LF +M   G+  +  TF         +G +  C   H  +  +G   +N ++       
Sbjct: 539 YLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNS----- 593

Query: 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
                  ++    ++G  D A  L   +  + D   W S++  C ++G
Sbjct: 594 -------LIATYFKSGEVDSAHKLFDELGDR-DVVSWNSMISGCVMNG 633


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 270/656 (41%), Positives = 391/656 (59%), Gaps = 42/656 (6%)

Query: 79  DLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRM----------ILSGFVP 128
           +L  A  +FE + E +   WN I+ G++ +     A + + RM          +LS +V 
Sbjct: 136 NLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQ 195

Query: 129 NT-----------------YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSL 171
           N+                  ++  +L    K   I E +Q     +K+    D     ++
Sbjct: 196 NSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFF-DSMKV---RDVVSWNTI 251

Query: 172 INMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVP 231
           I  YAQNGE++ AR +F++S + D  ++TA+++GY     +++AR+LFD MP R      
Sbjct: 252 ITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPER------ 305

Query: 232 NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLF 291
           NE +   +L+       +E+   +  ++       N+   N +I  Y++CG + +A++LF
Sbjct: 306 NEVSWNAMLAGYVQGERVEMAKELFDVMPCR----NVSTWNTMITGYAQCGKISEAKNLF 361

Query: 292 ESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALD 351
           + + KRD +SW  MI GY+ +    EAL LF  M +     N  +F S L  CA + AL+
Sbjct: 362 DKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALE 421

Query: 352 LGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGL 411
           LGK +H  + K   +     +  +L+ MY KCG+I+ A  +F  M  K + SWN MI+G 
Sbjct: 422 LGKQLHGRLVKGGYE-TGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGY 480

Query: 412 AMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK 471
           + HG  ++AL  F  M  EGL+PDD T V VLSAC+H GL+D GRQYF+ M QDY + P 
Sbjct: 481 SRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPN 540

Query: 472 LQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLL 531
            QHY CMVDLLGRAGL +EA  L+K M  +PDAAIW +LLGA RVHG  EL E+ A  + 
Sbjct: 541 SQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIF 600

Query: 532 ELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGD 591
            +EPEN G YVLLSN+YA +GRW DV  +R R+ DKG+KKVPG S IE+ +  H F VGD
Sbjct: 601 AMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGD 660

Query: 592 KVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLIS 651
           + HP+   I+  L+++D  ++K+G+V  TS VL+D++EE KE  + +HSE+LA+AYG++ 
Sbjct: 661 EFHPEKDEIFAFLEDLDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMR 720

Query: 652 TKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
              G  IR++KNLRVC +CH+A K ++K+  R II RD NRFHHFKDG+CSC DYW
Sbjct: 721 VSSGRPIRVIKNLRVCEDCHNAIKYMAKVTGRLIILRDNNRFHHFKDGSCSCGDYW 776



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 137/524 (26%), Positives = 224/524 (42%), Gaps = 113/524 (21%)

Query: 168 HTSLINMYAQNGELESARLVFNKSSLRDAVSYTALI------------------------ 203
           + ++I+ Y +NGE E AR++F++   RD VS+  +I                        
Sbjct: 93  YNAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDV 152

Query: 204 -------TGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLS------ACAHMGSLE 250
                  +GYA  G +DDAR++FD MP  E+N V   + +   +       AC   GS E
Sbjct: 153 CSWNTILSGYAQNGCVDDARRVFDRMP--EKNDVSWNALLSAYVQNSKLEEACVLFGSRE 210

Query: 251 ---LGNWVC---------SLIEGHGLGSNLHVT-----NALIDMYSKCGDLVKARDLFES 293
              L +W C          ++E      ++ V      N +I  Y++ G++ +AR LF+ 
Sbjct: 211 NWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDE 270

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
               DV +W  M+ GY      +EA  LF +M     E N+V++ ++L        +++ 
Sbjct: 271 SPVHDVFTWTAMVSGYIQNRMVEEARELFDRM----PERNEVSWNAMLAGYVQGERVEMA 326

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAM 413
           K +   +        NVS W ++I  YA+CG I  A+ +FD M  +   SW AMI+G + 
Sbjct: 327 KELFDVM-----PCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQ 381

Query: 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ-DYKISPKL 472
            G + +AL LF  M  EG + +  +F   LS C     L++G+Q    +++  Y+     
Sbjct: 382 SGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYET---- 437

Query: 473 QHYGCMVD-----LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG----RLELG 523
              GC V      +  + G  +EA  L K M  K D   W +++     HG     L   
Sbjct: 438 ---GCFVGNALLLMYCKCGSIEEANDLFKEMAGK-DIVSWNTMIAGYSRHGFGEEALRFF 493

Query: 524 ESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSV 583
           ES+ +    L+P++     +LS            A   T L DKG +             
Sbjct: 494 ESMKRE--GLKPDDATMVAVLS------------ACSHTGLVDKGRQ------------Y 527

Query: 584 VHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
            H       V P S+H   M+D    LL ++G + +   ++ +M
Sbjct: 528 FHTMTQDYGVRPNSQHYACMVD----LLGRAGLLEEAHNLMKNM 567



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 86/380 (22%), Positives = 153/380 (40%), Gaps = 67/380 (17%)

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
           S++   N  I  Y + G   +A  +F+ + +   +S+N MI GY    +++ A MLF +M
Sbjct: 57  SDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEM 116

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
            + ++   +V          Y+   +LGK    +         +V  W +++  YA+ G 
Sbjct: 117 PERDLVSWNVMIK------GYVRNRNLGKARELF---ERMPERDVCSWNTILSGYAQNGC 167

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF--------------------S 425
           +  A +VFD M  K   SWNA++S    + K ++A  LF                     
Sbjct: 168 VDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKK 227

Query: 426 RMIGEGLQ-------PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP--KLQHYG 476
           + I E  Q        D +++  +++     G +D  RQ F+        SP   +  + 
Sbjct: 228 KKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDE-------SPVHDVFTWT 280

Query: 477 CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEP- 535
            MV    +  + +EA  L   M  + + + W ++L       R+E+    AK L ++ P 
Sbjct: 281 AMVSGYIQNRMVEEARELFDRMPERNEVS-WNAMLAGYVQGERVEM----AKELFDVMPC 335

Query: 536 ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHP 595
            N   +  +   YA  G+  +       L DK  K+ P   +  +             + 
Sbjct: 336 RNVSTWNTMITGYAQCGKISEAKN----LFDKMPKRDPVSWAAMIAG-----------YS 380

Query: 596 QSKHIYEMLDEIDALLEKSG 615
           QS H YE L  +  L+E+ G
Sbjct: 381 QSGHSYEAL-RLFVLMEREG 399


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 277/665 (41%), Positives = 408/665 (61%), Gaps = 10/665 (1%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           KQVH Q IK G        + L+++   +    +     VF+ +R  N V W +++ G+ 
Sbjct: 112 KQVHCQCIKCGFVEDVSVGTSLVDMYMKTE--SVEDGERVFDEMRVKNVVSWTSLLAGYR 169

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +     A+K + +M L G  PN +TF  +L   A   A+ +G Q+H  V+K GL+S  F
Sbjct: 170 QNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIF 229

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V  S++NMY+++  +  A+ VF+    R+AVS+ ++I G+ + G   +A +LF  M  R 
Sbjct: 230 VGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRM--RL 287

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWV-CSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
           E     ++   TV+  CA++  +     + C +I+ +G   +L++  AL+  YSKC ++ 
Sbjct: 288 EGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIK-NGSDFDLNIKTALMVAYSKCSEID 346

Query: 286 KARDLFESIEK-RDVISWNVMIGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVLPA 343
            A  LF  +   ++V+SW  +I GY        A+ LF QM  +  +EPN+ TF SVL A
Sbjct: 347 DAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNA 406

Query: 344 CAY-LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           CA    +++ GK  H+   K+    N + + ++L+ MYAK GNI++A +VF     + L 
Sbjct: 407 CAAPTASVEQGKQFHSCSIKSGFS-NALCVSSALVTMYAKRGNIESANEVFKRQVDRDLV 465

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           SWN+MISG A HG   K+L +F  M  + L+ D ITF+GV+SAC HAGL++ G++YF+ M
Sbjct: 466 SWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLM 525

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
           ++DY I P ++HY CMVDL  RAG+ ++A  L+  M     A IW +LL ACRVH  ++L
Sbjct: 526 VKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQL 585

Query: 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582
           GE  A+ L+ L+P++  AYVLLSN+YA AG W + A +R  ++ K +KK  G S IEV +
Sbjct: 586 GELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKN 645

Query: 583 VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEK 642
               F+ GD  HPQS  IY  L+E+   L+ +G+ PDT  VL+D++EE KE  LS HSE+
Sbjct: 646 KTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSER 705

Query: 643 LAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCS 702
           LAIA+GLI+T PGT I+IVKNLRVCG+CH+  KLISKI  R+I+ RD NRFHHFK G+CS
Sbjct: 706 LAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCS 765

Query: 703 CNDYW 707
           C DYW
Sbjct: 766 CGDYW 770



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 127/428 (29%), Positives = 222/428 (51%), Gaps = 12/428 (2%)

Query: 114 AIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLIN 173
           A+  ++ +  SG   +  +   +LK C  +     GKQ+H   +K G   D  V TSL++
Sbjct: 76  ALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVD 135

Query: 174 MYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
           MY +   +E    VF++  +++ VS+T+L+ GY   G  + A +LF +M +  E   PN 
Sbjct: 136 MYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQL--EGIKPNP 193

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
            T   VL   A  G++E G  V +++   GL S + V N++++MYSK   +  A+ +F+S
Sbjct: 194 FTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDS 253

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
           +E R+ +SWN MI G+       EA  LF +M    ++     F +V+  CA +  +   
Sbjct: 254 MENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFA 313

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM-GYKTLASWNAMISGLA 412
           K +H  + KN     ++++ T+L+  Y+KC  I  A ++F  M G + + SW A+ISG  
Sbjct: 314 KQLHCQVIKNGSDF-DLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYV 372

Query: 413 MHGKADKALSLFSRMIG-EGLQPDDITFVGVLSACNH-AGLLDIGRQYFNAMIQDYKISP 470
            +G+ D+A++LF +M   EG++P++ TF  VL+AC      ++ G+Q+ +  I+    S 
Sbjct: 373 QNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKS-GFSN 431

Query: 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG----RLELGESV 526
            L     +V +  + G  + A  + K  ++  D   W S++     HG     L++ E +
Sbjct: 432 ALCVSSALVTMYAKRGNIESANEVFKR-QVDRDLVSWNSMISGYAQHGCGKKSLKIFEEM 490

Query: 527 AKHLLELE 534
               LEL+
Sbjct: 491 RSKNLELD 498



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 138/263 (52%), Gaps = 13/263 (4%)

Query: 40  CTNMQNI---KQVHSQIIKTGLHNTQFALS-KLIEICAVSPFGDLSYALLVFETIREPNQ 95
           C N++ +   KQ+H Q+IK G   + F L+ K   + A S   ++  A  +F  +     
Sbjct: 304 CANIKEMSFAKQLHCQVIKNG---SDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQN 360

Query: 96  VI-WNNIIRGHSLSSSPVVAIKFYVRMIL-SGFVPNTYTFPFILKSCAKISA-ISEGKQI 152
           V+ W  II G+  +     A+  + +M    G  PN +TF  +L +CA  +A + +GKQ 
Sbjct: 361 VVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQF 420

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H+  +K G  +   V ++L+ MYA+ G +ESA  VF +   RD VS+ ++I+GYA  G  
Sbjct: 421 HSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCG 480

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL-IEGHGLGSNLHVT 271
             + ++F+EM  R +N   +  T + V+SAC H G +  G     L ++ + +   +   
Sbjct: 481 KKSLKIFEEM--RSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHY 538

Query: 272 NALIDMYSKCGDLVKARDLFESI 294
           + ++D+YS+ G L KA DL   +
Sbjct: 539 SCMVDLYSRAGMLEKAMDLINKM 561


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 285/757 (37%), Positives = 427/757 (56%), Gaps = 100/757 (13%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           + VH QIIK GLH   + ++ L+   A +  G L +A  VF+ +   +   WN +I G++
Sbjct: 30  RSVHCQIIKKGLHLGVYLMNNLMTFYAKT--GSLRFAHHVFDEMPLKSTFSWNTLISGYA 87

Query: 107 --------------------LSSSPVV-----------AIKFYVRMILSGFVPNTYTFPF 135
                               +S + ++           AI  + +MI     P+ +T   
Sbjct: 88  KQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSN 147

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL-- 193
           +L SCA    +  G++IH+ V+KLGL S   V TSL+NMYA+ G+   A++VF++ ++  
Sbjct: 148 VLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKN 207

Query: 194 -----------------------------RDAVSYTALITGYASRGYLDDARQLFDEMPI 224
                                        RD VS+ ++I+GY+ +GY  +A  +F +M +
Sbjct: 208 ISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKM-L 266

Query: 225 REENFVPNESTVVTVLSACAHMGSLELGNWV----------------------------- 255
            E +  P+  T+ ++LSACA++  L +G  +                             
Sbjct: 267 NEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGV 326

Query: 256 --CSLIEGHGLGSNLHVT--NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311
               LI  H   SNL++    +L+D Y+K G++  AR++F  +  RDV++W  MI GY  
Sbjct: 327 EIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQ 386

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
              + +AL LFR M+    EPN  T  ++L   + L  L+ GK IHA   K  +  +  S
Sbjct: 387 NGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGES-STPS 445

Query: 372 LWTSLIDMYAKCGNIKAAEQVFD-GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE 430
           +  +LI MYAK GNI  A++VFD   G K + SW +MI  LA HG   +A++LF RM+  
Sbjct: 446 VTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSV 505

Query: 431 GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
           G++PD IT+VGVLSAC H GL++ GR+Y+N M + ++I P L HY CM+DL GRAGL  E
Sbjct: 506 GMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQE 565

Query: 491 AEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAG 550
           A   +++M ++PD   W SLL +C++H   +L +  A+ LL ++P N GAY+ L+N+Y+ 
Sbjct: 566 AYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSA 625

Query: 551 AGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDAL 610
            G+W++ A  R  + D+G++K  G S I + + VH F V D +HPQ   IY+++ EI   
Sbjct: 626 CGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEE 685

Query: 611 LEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNC 670
           ++K GF+PDT  VL+D++EE KE  L +HSEKLAIA+GL++T   T +RI+KNLRVC +C
Sbjct: 686 IKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDC 745

Query: 671 HSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           HSA K ISK+  REII RD  RFHHFKDG+CSC DYW
Sbjct: 746 HSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 150/549 (27%), Positives = 244/549 (44%), Gaps = 129/549 (23%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           F  IL++  +I     G+ +H  ++K GL    ++  +L+  YA+ G L  A  VF++  
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMP----------------------------- 223
           L+   S+  LI+GYA +G  + +R+L  EMP                             
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
           +  E   P++ TV  VLS+CA   +L++G  + S +   GLGS + V  +L++MY+KCGD
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGD 192

Query: 284 LVKARDL-------------------------------FESIEKRDVISWNVMIGGYTHT 312
            V A+ +                               FE +  RD++SWN MI GY+  
Sbjct: 193 PVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQ 252

Query: 313 SDYKEALMLFRQML-QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK--------- 362
               EAL +F +ML + +++P++ T  S+L ACA L  L++GK IHAYI +         
Sbjct: 253 GYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAV 312

Query: 363 ---------------------NHQKLNNVSL--WTSLIDMYAKCGNIKAAEQVFDGMGYK 399
                                 H + +N+++  +TSL+D Y K GN+K A ++F+ +  +
Sbjct: 313 GNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDR 372

Query: 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF 459
            + +W AMI G   +G  + AL LF  M+ EG +P+  T   +LS  +   +L+ G+Q  
Sbjct: 373 DVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIH 432

Query: 460 ---------------NAMIQDYKIS----------------PKLQHYGCMVDLLGRAGLF 488
                          NA+I  Y  +                 ++  +  M+  L + GL 
Sbjct: 433 ASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLG 492

Query: 489 DEAEALLKTM---EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP--GAYVL 543
            EA  L + M    MKPD   +  +L AC   G +E G      + E+    P    Y  
Sbjct: 493 KEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYAC 552

Query: 544 LSNMYAGAG 552
           + ++Y  AG
Sbjct: 553 MIDLYGRAG 561



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 115/278 (41%), Gaps = 50/278 (17%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L++ S  T +++ KQ+H+  IK G  +T    + LI + A +  G+++ A  VF+     
Sbjct: 416 LSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKT--GNINVAKRVFDLPNGK 473

Query: 94  NQVI-WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            +++ W ++I   +       AI  + RM+  G  P+  T+  +L +C  +  + +G++ 
Sbjct: 474 KEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKY 533

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           +                   NM  +  E+E                Y  +I  Y   G L
Sbjct: 534 Y-------------------NMMTEVHEIEPT-----------LSHYACMIDLYGRAGLL 563

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS---LIEGHGLGSNLH 269
            +A    + MPI  +N         ++L++C    + +L         LI+    G+ L 
Sbjct: 564 QEAYLFIESMPIEPDNIAWG-----SLLASCKIHKNADLAKVAAERLLLIDPGNSGAYL- 617

Query: 270 VTNALIDMYSKCG---DLVKARDLFE--SIEKRDVISW 302
              AL ++YS CG   +  + R L +   + K   ISW
Sbjct: 618 ---ALANVYSACGKWENAAQTRKLMKDRGVRKEKGISW 652


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 272/663 (41%), Positives = 399/663 (60%), Gaps = 13/663 (1%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSL 107
           QVH+ ++K G        + LI +   S  G L  A  VF+ +   + V WN++I G+  
Sbjct: 215 QVHAMVVKHGFEEAIPVFNSLISL--YSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVR 272

Query: 108 SSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFV 167
           +   +   + + +M L+G  P   TF  ++KSCA +  ++  K +    LK G  +D  V
Sbjct: 273 NGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIV 332

Query: 168 HTSLINMYAQNGELESARLVFN-KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
            T+L+   ++  E++ A  +F+     ++ VS+TA+I+G    G  D A  LF +M  R 
Sbjct: 333 ITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQM--RR 390

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           E   PN  T   +L+    +   E+   V           +  V  AL+D Y K G+ + 
Sbjct: 391 EGVKPNHFTYSAILTVHYPVFVSEMHAEVIKT----NYERSSSVGTALLDAYVKLGNTID 446

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A  +FE IE +D+++W+ M+ GY  T + +EA  LF Q+++  I+PN+ TF SV+ ACA 
Sbjct: 447 AVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACAS 506

Query: 347 -LGALDLGKWIHAYIDKNHQKLNN-VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
              A + GK  HAY  K   +LNN + + ++L+ MYAK GNI +A +VF     + L SW
Sbjct: 507 PTAAAEQGKQFHAYAIK--MRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSW 564

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
           N+MISG + HG+A KAL +F  M    +  D +TF+GV++AC HAGL++ G++YFN+MI 
Sbjct: 565 NSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMIN 624

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGE 524
           D+ I+P ++HY CM+DL  RAG+ ++A  ++  M   P A +W +LLGA RVH  +ELGE
Sbjct: 625 DHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGE 684

Query: 525 SVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVV 584
             A+ L+ L+PE+  AYVLLSNMYA AG W +   +R  ++ + +KK PG S IEV +  
Sbjct: 685 LAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKT 744

Query: 585 HEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLA 644
           + FL GD  HP S  IY  L E+   L+ +G+ PDT  V +D+++E KE  LSHHSE+LA
Sbjct: 745 YSFLAGDLTHPLSNQIYSKLSELSIRLKDAGYQPDTKNVFHDIEDEQKETILSHHSERLA 804

Query: 645 IAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCN 704
           IA+GLI+T P   I+IVKNLRVCG+CH+ TKL+S +  R I+ RD NRFHHFKDG CSC 
Sbjct: 805 IAFGLIATPPEIPIQIVKNLRVCGDCHNFTKLVSLVEQRYIVVRDSNRFHHFKDGLCSCG 864

Query: 705 DYW 707
           DYW
Sbjct: 865 DYW 867



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 138/499 (27%), Positives = 256/499 (51%), Gaps = 27/499 (5%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +QVH Q +K GL +     + L+++   +   +++    VF+ + E N V W +++ G+S
Sbjct: 113 RQVHCQCVKFGLVDHVSVGTSLVDMYMKTE--NVNDGRRVFDEMGERNVVSWTSLLAGYS 170

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +       + + +M   G +PN YT   ++ +      +  G Q+HA V+K G E    
Sbjct: 171 WNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIP 230

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V  SLI++Y++ G L  AR VF+K  +RD V++ ++I GY   G   +  ++F++M +  
Sbjct: 231 VFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQL-- 288

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
               P   T  +V+ +CA +  L L   +       G  ++  V  AL+   SKC ++  
Sbjct: 289 AGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDD 348

Query: 287 ARDLFESIEK-RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
           A  LF  +E+ ++V+SW  MI G        +A+ LF QM +  ++PN  T+ ++L    
Sbjct: 349 ALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHY 408

Query: 346 YLGALDLGKWIHAYIDK-NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
            +   ++    HA + K N+++ ++V   T+L+D Y K GN   A +VF+ +  K L +W
Sbjct: 409 PVFVSEM----HAEVIKTNYERSSSVG--TALLDAYVKLGNTIDAVKVFEIIEAKDLMAW 462

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC-NHAGLLDIGRQYFNAMI 463
           +AM++G A  G+ ++A  LF ++I EG++P++ TF  V++AC +     + G+Q+     
Sbjct: 463 SAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQF----- 517

Query: 464 QDYKISPKLQHYGC----MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
             Y I  +L +  C    +V +  + G  D A  + K  + + D   W S++     HG+
Sbjct: 518 HAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKER-DLVSWNSMISGYSQHGQ 576

Query: 520 ----LELGESVAKHLLELE 534
               LE+ + + K  ++++
Sbjct: 577 AKKALEVFDEMQKRNMDVD 595



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 138/487 (28%), Positives = 241/487 (49%), Gaps = 24/487 (4%)

Query: 89  TIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE 148
           T++E NQ++++     +S       A+  +V ++ S   P+  T   +   CA       
Sbjct: 57  TLKEHNQLLFS-----YSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNICAGSLDGKL 111

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           G+Q+H   +K GL     V TSL++MY +   +   R VF++   R+ VS+T+L+ GY+ 
Sbjct: 112 GRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSW 171

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
            G      +LF +M  + E  +PN  TV TV++A  + G + +G  V +++  HG    +
Sbjct: 172 NGLYGYVWELFCQM--QYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAI 229

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
            V N+LI +YS+ G L  ARD+F+ +E RD ++WN MI GY       E   +F +M  +
Sbjct: 230 PVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLA 289

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            ++P  +TF SV+ +CA L  L L K +     K+    + + + T+L+   +KC  +  
Sbjct: 290 GVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVI-TALMVALSKCKEMDD 348

Query: 389 AEQVFDGMGY-KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
           A  +F  M   K + SW AMISG   +G  D+A++LFS+M  EG++P+  T+  +L+   
Sbjct: 349 ALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTV-- 406

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
           H  +  +   +   +  +Y+ S  +     ++D   + G   +A  + + +E K D   W
Sbjct: 407 HYPVF-VSEMHAEVIKTNYERSSSVG--TALLDAYVKLGNTIDAVKVFEIIEAK-DLMAW 462

Query: 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA--------GRWDDVAT 559
           +++L      G  E    +   L++ E   P  +   S + A A        G+      
Sbjct: 463 SAMLAGYAQTGETEEAAKLFHQLIK-EGIKPNEFTFSSVINACASPTAAAEQGKQFHAYA 521

Query: 560 IRTRLND 566
           I+ RLN+
Sbjct: 522 IKMRLNN 528


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 278/741 (37%), Positives = 410/741 (55%), Gaps = 73/741 (9%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVS-PFGDLSYALLVFETIREPN 94
           L S   ++   +Q H+ I+KTGL N     +KL+   A +  F D   A LV + + EPN
Sbjct: 22  LNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFAD---ATLVLDLVPEPN 78

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
              ++ +I   S       A+  + +M+  G +P+    P  +K+CA +SA+   +Q+H 
Sbjct: 79  VFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHG 138

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
                G +SD FV +SL++MY +  ++  A  VF++    D VS++AL+  YA +G +D+
Sbjct: 139 IASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDE 198

Query: 215 ARQLFDEM---------------------------------PIREENFVPNESTVVTVLS 241
           A++LF EM                                  +    F P+ +T+ +VL 
Sbjct: 199 AKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLP 258

Query: 242 ACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV-- 299
           A   +  L +G  +   +   GL S+  V++ALIDMY KC    +   +F+ ++  DV  
Sbjct: 259 AVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGS 318

Query: 300 ---------------------------------ISWNVMIGGYTHTSDYKEALMLFRQML 326
                                            +SW  MI   +      EAL LFR+M 
Sbjct: 319 CNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQ 378

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
            + ++PN VT   +LPAC  + AL  GK  H +  +      +V + ++LIDMYAKCG I
Sbjct: 379 IAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGIS-TDVYVGSALIDMYAKCGRI 437

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
           +A+   FDG+  K L  WNA+I+G AMHGKA +A+ +F  M   G +PD I+F  VLSAC
Sbjct: 438 QASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSAC 497

Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
           + +GL + G  YFN+M   Y I  +++HY CMV LL RAG  ++A A+++ M + PDA +
Sbjct: 498 SQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACV 557

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
           W +LL +CRVH  + LGE  A+ L ELEP NPG Y+LLSN+YA  G W++V  +R  + +
Sbjct: 558 WGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKN 617

Query: 567 KGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYD 626
           KG++K PGCS IEV + VH  L GDK HPQ   I E LD++   ++K G+ P+ + VL D
Sbjct: 618 KGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLSMEMKKLGYFPEINFVLQD 677

Query: 627 MDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREII 686
           ++E+ KE  L  HSEKLA+ +GL++T PG  ++++KNLR+CG+CH   K IS    REI 
Sbjct: 678 VEEQDKEQILCGHSEKLAVVFGLLNTPPGYPLQVIKNLRICGDCHVVIKFISSFERREIF 737

Query: 687 ARDRNRFHHFKDGNCSCNDYW 707
            RD NRFHHFK+G CSC DYW
Sbjct: 738 VRDTNRFHHFKEGACSCGDYW 758


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 285/757 (37%), Positives = 427/757 (56%), Gaps = 100/757 (13%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           + VH QIIK GLH   + ++ L+   A +  G L +A  VF+ +   +   WN +I G++
Sbjct: 30  RSVHCQIIKKGLHLGVYLMNNLMTFYAKT--GSLRFAHHVFDEMPLKSTFSWNTLISGYA 87

Query: 107 --------------------LSSSPVV-----------AIKFYVRMILSGFVPNTYTFPF 135
                               +S + ++           AI  + +MI     P+ +T   
Sbjct: 88  KQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSN 147

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL-- 193
           +L SCA    +  G++IH+ V+KLGL S   V TSL+NMYA+ G+   A++VF++ ++  
Sbjct: 148 VLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKN 207

Query: 194 -----------------------------RDAVSYTALITGYASRGYLDDARQLFDEMPI 224
                                        RD VS+ ++I+GY+ +GY  +A  +F +M +
Sbjct: 208 ISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKM-L 266

Query: 225 REENFVPNESTVVTVLSACAHMGSLELGNWV----------------------------- 255
            E +  P+  T+ ++LSACA++  L +G  +                             
Sbjct: 267 NEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGV 326

Query: 256 --CSLIEGHGLGSNLHVT--NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311
               LI  H   SNL++    +L+D Y+K G++  AR++F  +  RDV++W  MI GY  
Sbjct: 327 EIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQ 386

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
              + +AL LFR M+    EPN  T  ++L   + L  L+ GK IHA   K  +  +  S
Sbjct: 387 NGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGES-STPS 445

Query: 372 LWTSLIDMYAKCGNIKAAEQVFD-GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE 430
           +  +LI MYAK GNI  A++VFD   G K + SW +MI  LA HG   +A++LF RM+  
Sbjct: 446 VTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSV 505

Query: 431 GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
           G++PD IT+VGVLSAC H GL++ GR+Y+N M + ++I P L HY CM+DL GRAGL  E
Sbjct: 506 GMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQE 565

Query: 491 AEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAG 550
           A   +++M ++PD   W SLL +C++H   +L +  A+ LL ++P N GAY+ L+N+Y+ 
Sbjct: 566 AYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSA 625

Query: 551 AGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDAL 610
            G+W++ A  R  + D+G++K  G S I + + VH F V D +HPQ   IY+++ EI   
Sbjct: 626 CGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEE 685

Query: 611 LEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNC 670
           ++K GF+PDT  VL+D++EE KE  L +HSEKLAIA+GL++T   T +RI+KNLRVC +C
Sbjct: 686 IKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDC 745

Query: 671 HSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           HSA K ISK+  REII RD  RFHHFKDG+CSC DYW
Sbjct: 746 HSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 150/549 (27%), Positives = 245/549 (44%), Gaps = 129/549 (23%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           F  IL++  +I     G+ +H  ++K GL    ++  +L+  YA+ G L  A  VF++  
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMP----------------------------- 223
           L+   S+  LI+GYA +G  + +R+L  EMP                             
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
           +  E   P++ TV  VLS+CA   +L++G  + S +   GLGS + V  +L++MY+KCGD
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGD 192

Query: 284 LVKARDL-------------------------------FESIEKRDVISWNVMIGGYTHT 312
            V A+ +                               FE +  RD++SWN MI GY+  
Sbjct: 193 PVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQ 252

Query: 313 SDYKEALMLFRQML-QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK--------- 362
               EAL++F +ML + +++P++ T  S+L ACA L  L++GK IHAYI +         
Sbjct: 253 GYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAV 312

Query: 363 ---------------------NHQKLNNVSL--WTSLIDMYAKCGNIKAAEQVFDGMGYK 399
                                 H + +N+++  +TSL+D Y K GN+K A ++F+ +  +
Sbjct: 313 GNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDR 372

Query: 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF 459
            + +W AMI G   +G  + AL LF  M+ EG +P+  T   +LS  +   +L+ G+Q  
Sbjct: 373 DVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIH 432

Query: 460 ---------------NAMIQDYKIS----------------PKLQHYGCMVDLLGRAGLF 488
                          NA+I  Y  +                 ++  +  M+  L + GL 
Sbjct: 433 ASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLG 492

Query: 489 DEAEALLKTM---EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP--GAYVL 543
            EA  L + M    MKPD   +  +L AC   G +E G      + E+    P    Y  
Sbjct: 493 KEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYAC 552

Query: 544 LSNMYAGAG 552
           + ++Y  AG
Sbjct: 553 MIDLYGRAG 561



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 115/278 (41%), Gaps = 50/278 (17%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L++ S  T +++ KQ+H+  IK G  +T    + LI + A +  G+++ A  VF+     
Sbjct: 416 LSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKT--GNINVAKRVFDLPNGK 473

Query: 94  NQVI-WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            +++ W ++I   +       AI  + RM+  G  P+  T+  +L +C  +  + +G++ 
Sbjct: 474 KEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKY 533

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           +                   NM  +  E+E                Y  +I  Y   G L
Sbjct: 534 Y-------------------NMMTEVHEIEPT-----------LSHYACMIDLYGRAGLL 563

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS---LIEGHGLGSNLH 269
            +A    + MPI  +N         ++L++C    + +L         LI+    G+ L 
Sbjct: 564 QEAYLFIESMPIEPDNIAWG-----SLLASCKIHKNADLAKVAAERLLLIDPGNSGAYL- 617

Query: 270 VTNALIDMYSKCG---DLVKARDLFE--SIEKRDVISW 302
              AL ++YS CG   +  + R L +   + K   ISW
Sbjct: 618 ---ALANVYSACGKWENAAQTRKLMKDRGVRKEKGISW 652


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 268/564 (47%), Positives = 366/564 (64%), Gaps = 17/564 (3%)

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNG-----ELESARLVFNKSSLRDAVSYTALIT 204
           KQ HA +L+ G   D ++  SL+  YA          ES+  VF+     +   +  +I 
Sbjct: 72  KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 131

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
                     A  L+ EM +   +F PN+ T   VL AC+  G +  G  V + +  HGL
Sbjct: 132 VCIENNEPFKAILLYYEMMV--AHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGL 189

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
           G + H+ ++ I MY+  G LV+AR + +  +K   +    M         + EAL +F Q
Sbjct: 190 GGDGHILSSAIRMYASFGRLVEARRILD--DKGGEVDAVCMP---DRKGCFMEALEIFHQ 244

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           M +  I P      SVL ACA LGALD G+WIH Y  +N  +L+ V L TSL+DMYAKCG
Sbjct: 245 MQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGV-LGTSLVDMYAKCG 303

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
            I  A +VF+ M  K ++SWNAMI GLAMHG+A+ A+ LFS+M    + P++ITFVGVL+
Sbjct: 304 RIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITFVGVLN 360

Query: 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504
           AC H GL+  G   FN+M ++Y + P+++HYGC+VDLLGRAGL  EAE ++ ++  +P  
Sbjct: 361 ACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTP 420

Query: 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564
           A+W +LLGACR HG +ELGE V K LLELEP+N G Y LLSN+YA AGRW++V  +R  +
Sbjct: 421 AVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLM 480

Query: 565 NDKGMKKVPGCSSIEVG-SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEV 623
            ++G+K  PG S I++G   VH+F++GD  HPQ K IY+MLD++   L+  G+ PD S+V
Sbjct: 481 KERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQV 540

Query: 624 LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNR 683
           L+D+DEE KE A+  HSEKLAI +GLI+T PGTTIRIVKNLRVC +CHSATKLIS+++NR
Sbjct: 541 LFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNR 600

Query: 684 EIIARDRNRFHHFKDGNCSCNDYW 707
           EII RDR R+HHF++G CSC D+W
Sbjct: 601 EIIVRDRIRYHHFRNGACSCKDFW 624



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 128/398 (32%), Positives = 225/398 (56%), Gaps = 18/398 (4%)

Query: 28  LQNQPSLALL-SKCT-NMQNIKQVHSQIIKTG-LHNTQFALSKLIEICAVSPFGDLSY-- 82
           L ++  L LL ++CT ++ ++KQ H+ I++TG L ++  A S +     VS    LS+  
Sbjct: 51  LSHKAILHLLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFES 110

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           +L VF+ +R+PN  +WN +I+    ++ P  AI  Y  M+++ F PN YT+P +LK+C+ 
Sbjct: 111 SLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSD 170

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGEL-ESARLVFNKSSLRDAVSYTA 201
              ++EG Q+HAH++K GL  D  + +S I MYA  G L E+ R++ +K    DAV    
Sbjct: 171 AGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCMP- 229

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
                  +G   +A ++F +M  ++E   P +  + +VLSACA++G+L+ G W+ +  + 
Sbjct: 230 -----DRKGCFMEALEIFHQM--QKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKR 282

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALML 321
           + +  +  +  +L+DMY+KCG +  A ++FE +  ++V SWN MIGG       ++A+ L
Sbjct: 283 NSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDL 342

Query: 322 FRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381
           F +M   +I PN++TF+ VL ACA+ G +  G  I   + K +     +  +  ++D+  
Sbjct: 343 FSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLG 399

Query: 382 KCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKAD 418
           + G +  AE+V   +  + T A W A++     HG  +
Sbjct: 400 RAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVE 437


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 264/612 (43%), Positives = 374/612 (61%), Gaps = 8/612 (1%)

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
           WN  +R  +       A+  Y +M+ SG  PN +TFPF  KSCA +S    G Q+H HV+
Sbjct: 24  WNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVI 83

Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVF--NKSSLRDAVSYTALITGYASRGYLDDA 215
           K G E +PFV TSLI+MY +   + SAR VF  N  S   AV Y ALI GY+      DA
Sbjct: 84  KTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDA 143

Query: 216 RQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALI 275
             LF +M  R+E    N  T++ ++  CA    L  G  + +     GL  +L V N L+
Sbjct: 144 VLLFRQM--RKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLL 201

Query: 276 DMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV 335
            MY +CG +  AR LF+ + ++ +I+WN MI GY         L L+R+M  + I P+ V
Sbjct: 202 TMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPV 261

Query: 336 TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
           T + VL +CA+LGA   G+ +   I+ +    N   L  +LI+MYA+CGN+  A  +FDG
Sbjct: 262 TLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPF-LKNALINMYARCGNLVKARAIFDG 320

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
           M  K + SW A+I+G  MHG+ + A+ LF  MI     PD   FV VLSAC+HAGL + G
Sbjct: 321 MTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKG 380

Query: 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACR 515
             YF AM +DY + P  +HY C+VDLLGRAG  +EA  L+ +M ++PD A+W +LLGAC+
Sbjct: 381 LYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACK 440

Query: 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGC 575
           +H  +EL E   + ++E EP N G YVLLSN+++ AG  + +  +R  + ++ +KK PGC
Sbjct: 441 IHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGC 500

Query: 576 SSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGA 635
           S +E    +H FL GD+ HPQ++ IY MLD ++ ++++ G   D  +     +EE   G 
Sbjct: 501 SYVEYQGRIHLFLAGDRTHPQAQEIYHMLDGLEDIIKRRGGSNDNDQ--ESRNEELITG- 557

Query: 636 LSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHH 695
           +  HSEKLAIA+GLI+T+PGT I ++KNLRVCG+CH   KL+S+I +R+++ RD  RFHH
Sbjct: 558 MGVHSEKLAIAFGLINTEPGTEITVIKNLRVCGDCHLFLKLVSEIVDRQLVVRDATRFHH 617

Query: 696 FKDGNCSCNDYW 707
           FK+G CSC DYW
Sbjct: 618 FKNGVCSCKDYW 629



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 131/451 (29%), Positives = 228/451 (50%), Gaps = 25/451 (5%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEI-CAVSPFGDLSYALLVFETIREPNQ--VIWNNIIRG 104
           Q+H  +IKTG     F  + LI + C  S    ++ A  VF+         V +N +I G
Sbjct: 77  QLHGHVIKTGCEPEPFVQTSLISMYCKCS---TIASARKVFDENHHSRNLAVCYNALIAG 133

Query: 105 HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESD 164
           +SL+S    A+  + +M   G   N  T   ++  CA    +  G  +HA  ++ GL+ D
Sbjct: 134 YSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGD 193

Query: 165 PFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPI 224
             V   L+ MY + G ++ AR +F+    +  +++ A+I+GYA  G       L+ +M  
Sbjct: 194 LSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEF 253

Query: 225 REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
                VP+  T+V VLS+CAH+G+   G  V   IE  G G N  + NALI+MY++CG+L
Sbjct: 254 --TGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNL 311

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
           VKAR +F+ + +++VISW  +I GY      + A+ LF +M+ S+  P+   F+SVL AC
Sbjct: 312 VKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSAC 371

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLAS 403
           ++ G  + G +    +++++        ++ ++D+  + G ++ A ++   M  +   A 
Sbjct: 372 SHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAV 431

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS-----ACNHAGLLDIGRQY 458
           W A++    +H   + A   F ++I    +P +I +  +LS     A N  G+L +    
Sbjct: 432 WGALLGACKIHRNVELAELAFEKVI--EFEPTNIGYYVLLSNIFSEAGNMEGILRV---- 485

Query: 459 FNAMIQDYKISPKLQHYGC-MVDLLGRAGLF 488
              M+++ K+    +  GC  V+  GR  LF
Sbjct: 486 -RVMMRERKLK---KEPGCSYVEYQGRIHLF 512



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 147/361 (40%), Gaps = 62/361 (17%)

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           SWN  +        ++EAL L+ QML S   PN  TF     +CA L     G  +H ++
Sbjct: 23  SWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHV 82

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-KTLA-SWNAMISGLAMHGKAD 418
            K   +     + TSLI MY KC  I +A +VFD   + + LA  +NA+I+G +++ +  
Sbjct: 83  IKTGCEPEPF-VQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFS 141

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACN-----------HA------------------ 449
            A+ LF +M  EG+  + +T +G++  C            HA                  
Sbjct: 142 DAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLL 201

Query: 450 ------GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK-- 501
                 G +D  R+ F+ M +   I+     +  M+    + GL      L + ME    
Sbjct: 202 TMYVRCGSVDFARKLFDGMPEKGLIT-----WNAMISGYAQNGLAGHVLDLYRKMEFTGI 256

Query: 502 -PDAAIWTSLLGACRVHGRLELGESVAKHL-LELEPENPGAYVLLSNMYAGAGRWDDVAT 559
            PD      +L +C   G    G  V + + L     NP     L NMYA   R  ++  
Sbjct: 257 VPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYA---RCGNLVK 313

Query: 560 IRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEI---DALLEKSGF 616
            R   +    K V   ++I         + G  +H Q +   ++ DE+   D L + + F
Sbjct: 314 ARAIFDGMTEKNVISWTAI---------IAGYGMHGQGELAVQLFDEMISSDELPDGAAF 364

Query: 617 V 617
           V
Sbjct: 365 V 365


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 275/676 (40%), Positives = 398/676 (58%), Gaps = 48/676 (7%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ 95
           L+    +   ++Q+H Q+ +  + ++   +++ I  C  S    + YA+ +F+     N 
Sbjct: 48  LIHASNSTHKLRQIHGQLYRCNVFSSSRVVTQFISSC--SSLNSVDYAISIFQRFELKNS 105

Query: 96  VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAH 155
            ++N +IRG + +S    +I F+V M+     P+  TFPF+LKS A +S    G+ +H  
Sbjct: 106 YLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCG 165

Query: 156 VLKLGLESDPFVHTSLINMYAQNGELESARLVFNKS--SLRDA--VSYTALITGYASRGY 211
           +LK GLE D FV  SL++MY +  EL SA  VF++S  S+++   + +  LI GY   G 
Sbjct: 166 ILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGD 225

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
           L  A +LFD MP ++                         G+W                 
Sbjct: 226 LVKATELFDSMPKKDT------------------------GSW----------------- 244

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N+LI+ + K GD+ +A++LF  + +++V+SW  M+ G++   D ++AL  F  ML+    
Sbjct: 245 NSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGAR 304

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           PND T +S L ACA +GALD G  IH Y+  N  KLN V + T+L+DMYAKCGNI+ AE+
Sbjct: 305 PNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLV-IGTALVDMYAKCGNIEHAEK 363

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VF     K L  W+ MI G A+HG   KAL  F  M   G +PD + F+ VL+AC+H+G 
Sbjct: 364 VFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQ 423

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           ++ G ++F+ M + Y I P ++HY  +VD+LGRAG  DEA   ++ M + PD  +W +L 
Sbjct: 424 VNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALF 483

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
            ACR H  +E+ E  +K LL+LEP++PG+YV LSN YA  GRWDD   +R  + D G  K
Sbjct: 484 CACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDAERVRVSMRDHGAHK 543

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
            PG S IEV   +H F+ GD  H ++  IY  LDEI A   + G+  +   VL++++EE 
Sbjct: 544 DPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISASAREKGYTKEIECVLHNIEEEE 603

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           KE AL +HSEKLA+A+G++ST+PGTT+RIVKNLRVC +CHS  K  SK+  REII RD  
Sbjct: 604 KEEALGYHSEKLALAFGIVSTRPGTTVRIVKNLRVCVDCHSFMKYASKMSKREIILRDMK 663

Query: 692 RFHHFKDGNCSCNDYW 707
           RFHHF DG CSC DYW
Sbjct: 664 RFHHFNDGVCSCGDYW 679


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 281/709 (39%), Positives = 404/709 (56%), Gaps = 55/709 (7%)

Query: 50  HSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE---PNQVIWNNIIRGHS 106
           H+ + ++G  +  F  + ++ +      G L +A  +F+ +      + V WN+++  + 
Sbjct: 282 HATVSRSGFASNVFVCNAVVSM--YGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYM 339

Query: 107 LSSSPVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
            +S    A+  + +M     + P+  +   IL +CA ++A   G+Q+H   ++ GL  D 
Sbjct: 340 WASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDV 399

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           FV  ++++MYA+ G++E A  VF +   +D VS+ A++TGY+  G L+ A  LF+ M   
Sbjct: 400 FVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMT-- 457

Query: 226 EENF-----------------------------------VPNESTVVTVLSACAHMGSLE 250
           EEN                                     PN  T+V++LSAC  +G+L 
Sbjct: 458 EENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALL 517

Query: 251 LGNWV-CSLI------EGHGLGSN-LHVTNALIDMYSKCGDLVKARDLFESI--EKRDVI 300
            G    C  I      +G   G++ L V N LIDMY+KC     AR +F+S+  + RDV+
Sbjct: 518 HGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVV 577

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQ--SNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
           +W VMIGGY    D   AL LF  M +   +I+PND T    L ACA L AL  G+ +HA
Sbjct: 578 TWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHA 637

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKAD 418
           Y+ +N      + +   LIDMY+K G++  A+ VFD M  +   SW ++++G  MHG+ +
Sbjct: 638 YVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGE 697

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478
            AL +F  M    L PD ITF+ VL AC+H+G++D G  +FN M +D+ + P  +HY CM
Sbjct: 698 DALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACM 757

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
           VDL GRAG   EA  L+  M M+P   +W +LL ACR+H  +ELGE  A  LLELE  N 
Sbjct: 758 VDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELESGND 817

Query: 539 GAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSK 598
           G+Y LLSN+YA A RW DVA IR  +   G+KK PGCS I+    V  F VGD+ HPQS+
Sbjct: 818 GSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQ 877

Query: 599 HIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTI 658
            IYE L ++   ++  G+VP TS  L+D+D+E K   L  HSEKLA+AYG+++  P   I
Sbjct: 878 QIYETLADLIQRIKAIGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTLHPRAPI 937

Query: 659 RIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           RI KNLR+CG+CHSA   ISKI   EII RD +RFHHFK+G+CSC  YW
Sbjct: 938 RITKNLRICGDCHSAITYISKIIEHEIILRDSSRFHHFKNGSCSCKGYW 986



 Score =  243 bits (619), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 183/598 (30%), Positives = 289/598 (48%), Gaps = 79/598 (13%)

Query: 17  FPPSSDPPYKLLQNQPS-----------LALLSKCTNMQNIKQVHSQIIKTGLHNTQFAL 65
           FP  S    KLLQ+Q +           +  L +C ++ + K +H Q I  GL    F L
Sbjct: 141 FPIKS----KLLQSQFTNTRLLSCATIPITALKECNSLAHAKLLHQQSIMQGL---LFHL 193

Query: 66  -SKLIEICAVSPFGDLSYALLVFETIR-EPNQVIW-NNIIRGHSLSSSPVVAIKFYVRMI 122
            + LI     S     +YA+L+ E +   P+ V W N +IR      SP      Y +M 
Sbjct: 194 ATNLIGTYIAS--NSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMK 251

Query: 123 LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELE 182
             G+ P+ YTFPF+ K+CA +S++S G  +HA V + G  S+ FV  ++++MY + G L 
Sbjct: 252 SLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALR 311

Query: 183 SARLVFNK---SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTV 239
            A  +F+      ++D VS+ ++++ Y      + A  LF +M  R     P+  ++V +
Sbjct: 312 HAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHL-MSPDVISLVNI 370

Query: 240 LSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV 299
           L ACA + +   G  V       GL  ++ V NA++DMY+KCG + +A  +F+ ++ +DV
Sbjct: 371 LPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDV 430

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE---------------------------- 331
           +SWN M+ GY+     + AL LF +M + NIE                            
Sbjct: 431 VSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQ 490

Query: 332 -------PNDVTFLSVLPACAYLGALDLGKWIHAY-------IDKNHQKLNNVSLWTSLI 377
                  PN VT +S+L AC  +GAL  GK  H Y       +D      +++ +   LI
Sbjct: 491 MCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLI 550

Query: 378 DMYAKCGNIKAAEQVFDGMGYK--TLASWNAMISGLAMHGKADKALSLFSRM--IGEGLQ 433
           DMYAKC + + A ++FD +  K   + +W  MI G A HG A+ AL LFS M  + + ++
Sbjct: 551 DMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIK 610

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
           P+D T    L AC     L  GRQ    +++++  S  L    C++D+  ++G  D A+ 
Sbjct: 611 PNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQI 670

Query: 494 LLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE--PENPGAYVLLSNMYA 549
           +   M  + +A  WTSL+    +HGR   GE   +   E+   P  P     L  +YA
Sbjct: 671 VFDNMPQR-NAVSWTSLMTGYGMHGR---GEDALRVFDEMRKVPLVPDGITFLVVLYA 724


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 254/622 (40%), Positives = 386/622 (62%), Gaps = 4/622 (0%)

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145
           +F+ + + + + WN++I G+  +      +  + +M+L G   +  T   ++  C+    
Sbjct: 207 LFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGM 266

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
           +  G+ +H + +K     +  ++  L++MY+++G L SA  VF     R  VS+T++I G
Sbjct: 267 LLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAG 326

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           YA  G  D + +LF EM   +E   P+  T+ T+L ACA  G LE G  V + I+ + + 
Sbjct: 327 YAREGLSDMSVRLFHEM--EKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQ 384

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
           S+L V+NAL+DMY+KCG +  A  +F  ++ +D++SWN MIGGY+  S   EAL LF +M
Sbjct: 385 SDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEM 444

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
            Q N +PN +T   +LPACA L AL+ G+ IH +I +N   L+   +  +L+DMY KCG 
Sbjct: 445 -QYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDR-HVANALVDMYLKCGA 502

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           +  A  +FD +  K L SW  MI+G  MHG   +A++ F+ M   G++PD+++F+ +L A
Sbjct: 503 LGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYA 562

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           C+H+GLLD G  +FN M  +  I PK +HY C+VDLL RAG   +A   +K M ++PDA 
Sbjct: 563 CSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDAT 622

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
           IW +LL  CR++  ++L E VA+H+ ELEPEN G YVLL+N+YA A +W++V  +R R+ 
Sbjct: 623 IWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIG 682

Query: 566 DKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLY 625
            +G++K PGCS IE+   VH F+ GD  HP +  I  +L +    +++ G  P     L 
Sbjct: 683 RRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALI 742

Query: 626 DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREI 685
             D+  KE AL  HSEK+A+A+G++S  PG T+R+ KNLRVCG+CH   K +SK+  R+I
Sbjct: 743 KADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDI 802

Query: 686 IARDRNRFHHFKDGNCSCNDYW 707
           I RD NRFHHFKDG+CSC  +W
Sbjct: 803 ILRDSNRFHHFKDGSCSCRGHW 824



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 189/341 (55%), Gaps = 4/341 (1%)

Query: 75  SPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFP 134
           S  G+L+ A+ VFET+ E + V W ++I G++      ++++ +  M   G  P+ +T  
Sbjct: 297 SKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTIT 356

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
            IL +CA    +  GK +H ++ +  ++SD FV  +L++MYA+ G +  A  VF++  ++
Sbjct: 357 TILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVK 416

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
           D VS+  +I GY+     ++A  LF EM   + N  PN  T+  +L ACA + +LE G  
Sbjct: 417 DIVSWNTMIGGYSKNSLPNEALNLFVEM---QYNSKPNSITMACILPACASLAALERGQE 473

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           +   I  +G   + HV NAL+DMY KCG L  AR LF+ I ++D++SW VMI GY     
Sbjct: 474 IHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGY 533

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
             EA+  F +M  S IEP++V+F+S+L AC++ G LD G      +  N         + 
Sbjct: 534 GSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYA 593

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMH 414
            ++D+ A+ GN+  A +    M  +  A+ W A++ G  ++
Sbjct: 594 CIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIY 634



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 124/436 (28%), Positives = 210/436 (48%), Gaps = 55/436 (12%)

Query: 132 TFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGEL---------- 181
           T+  +L+ CA + +I +G++IH+ +    +E D  + + L+ MY   G+L          
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162

Query: 182 ---------------------------------------ESARLVFNKSSLRDAVSYTAL 202
                                                  ESAR +F++   RD +S+ ++
Sbjct: 163 ANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSM 222

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
           I+GY S G  +    LF++M +   N   + +T+V+V++ C++ G L LG  +       
Sbjct: 223 ISGYVSNGLSEKGLDLFEQMLLLGIN--TDLATMVSVVAGCSNTGMLLLGRALHGYAIKA 280

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
             G  L + N L+DMYSK G+L  A  +FE++ +R V+SW  MI GY        ++ LF
Sbjct: 281 SFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLF 340

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
            +M +  I P+  T  ++L ACA  G L+ GK +H YI +N  + +++ +  +L+DMYAK
Sbjct: 341 HEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQ-SDLFVSNALMDMYAK 399

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
           CG++  A  VF  M  K + SWN MI G + +   ++AL+LF  M     +P+ IT   +
Sbjct: 400 CGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSITMACI 458

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
           L AC     L+ G++    ++++   S        +VD+  + G    A  L   +  K 
Sbjct: 459 LPACASLAALERGQEIHGHILRN-GFSLDRHVANALVDMYLKCGALGLARLLFDMIPEK- 516

Query: 503 DAAIWTSLLGACRVHG 518
           D   WT ++    +HG
Sbjct: 517 DLVSWTVMIAGYGMHG 532



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 168/364 (46%), Gaps = 56/364 (15%)

Query: 199 YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           Y   I  +   G L  A +L ++ P  +        T  +VL  CA + S++ G  + S+
Sbjct: 71  YNIEICRFCELGNLRRAMELINQSPKPDLEL----RTYCSVLQLCADLKSIQDGRRIHSI 126

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVK-------------------------------- 286
           I+ + +  +  + + L+ MY  CGDL +                                
Sbjct: 127 IQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRES 186

Query: 287 -----------------ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
                            AR LF+ +  RDVISWN MI GY      ++ L LF QML   
Sbjct: 187 LSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLG 246

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           I  +  T +SV+  C+  G L LG+ +H Y  K       ++L   L+DMY+K GN+ +A
Sbjct: 247 INTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFG-KELTLNNCLLDMYSKSGNLNSA 305

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
            QVF+ MG +++ SW +MI+G A  G +D ++ LF  M  EG+ PD  T   +L AC   
Sbjct: 306 IQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACT 365

Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
           GLL+ G+   N  I++ K+   L     ++D+  + G   +A ++   M++K D   W +
Sbjct: 366 GLLENGKDVHN-YIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVK-DIVSWNT 423

Query: 510 LLGA 513
           ++G 
Sbjct: 424 MIGG 427


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 274/672 (40%), Positives = 401/672 (59%), Gaps = 80/672 (11%)

Query: 40  CTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWN 99
           C++M  +KQ HS +++ GL     A+S++   C++S  GD++YAL +F T+  P+  ++N
Sbjct: 12  CSSMAEVKQQHSLLLRLGLSTNNHAMSRIFTFCSLSKHGDINYALKLFTTLPNPDTFLYN 71

Query: 100 NIIRGH-SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLK 158
            + +   SLS +P +++ FY  M+     PN +TFP ++++C K+    E KQ+HAHVLK
Sbjct: 72  TLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRAC-KLE--EEAKQLHAHVLK 128

Query: 159 LGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQL 218
            G   D +   +LI++Y                                + G LDDAR++
Sbjct: 129 FGFGGDTYALNNLIHVYF-------------------------------AFGSLDDARRV 157

Query: 219 FDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMY 278
           F  M         ++  VV+               W  SL+ G                Y
Sbjct: 158 FCTM---------SDPNVVS---------------WT-SLVSG----------------Y 176

Query: 279 SKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQM-LQSNIEPNDVT 336
           S+ G + +A  +FE +  K++ +SWN MI  +   + ++EA  LFR+M ++  +E +   
Sbjct: 177 SQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFV 236

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
             ++L AC  +GAL+ G WIH Y++K    L++  L T++IDMY KCG +  A  VF G+
Sbjct: 237 AATMLSACTGVGALEQGMWIHKYVEKTGIVLDS-KLATTIIDMYCKCGCLDKAFHVFCGL 295

Query: 397 GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL-QPDDITFVGVLSACNHAGLLDIG 455
             K ++SWN MI G AMHGK + A+ LF  M  E +  PD ITFV VL+AC H+GL++ G
Sbjct: 296 KVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEG 355

Query: 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACR 515
             YF  M+  + I P  +HYGCMVDLL RAG  +EA+ ++  M M PDAA+  +LLGACR
Sbjct: 356 WYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGACR 415

Query: 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGC 575
           +HG LELGE V   ++EL+PEN G YV+L NMYA  G+W+ VA +R  ++D+G+KK PG 
Sbjct: 416 IHGNLELGEEVGNRVIELDPENSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVKKEPGF 475

Query: 576 SSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGA 635
           S IE+  VV+EF+ G + HP ++ IY  + E+   +   GFVPDT  VL+D+ EE +E  
Sbjct: 476 SMIEMEGVVNEFVAGGRDHPLAEAIYAKIYEMLESIRVVGFVPDTDGVLHDLVEEERENP 535

Query: 636 LSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHH 695
           L +HSEKLAIAYGL+ TK G T+R+ KNLRVC +CH A+K+ISK+++ +II RDR+RFHH
Sbjct: 536 LFYHSEKLAIAYGLLKTKRGETLRVTKNLRVCKDCHQASKMISKVYDCDIIIRDRSRFHH 595

Query: 696 FKDGNCSCNDYW 707
           F +G CSC DYW
Sbjct: 596 FSNGECSCKDYW 607



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 174/407 (42%), Gaps = 86/407 (21%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           +L+  C   +  KQ+H+ ++K G     +AL+ LI +     FG L  A  VF T+ +PN
Sbjct: 108 SLIRACKLEEEAKQLHAHVLKFGFGGDTYALNNLIHV--YFAFGSLDDARRVFCTMSDPN 165

Query: 95  QVIWNNIIRGHS---------------------LSSSPVVA-----------------IK 116
            V W +++ G+S                     +S + ++A                 ++
Sbjct: 166 VVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMR 225

Query: 117 FYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYA 176
              +M L  FV  T     +L +C  + A+ +G  IH +V K G+  D  + T++I+MY 
Sbjct: 226 VEKKMELDRFVAAT-----MLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYC 280

Query: 177 QNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTV 236
           + G L+ A  VF    ++   S+  +I G+A  G  +DA +LF EM   E    P+  T 
Sbjct: 281 KCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEME-EEAMVAPDSITF 339

Query: 237 VTVLSACAHMGSLELGNWVCS-LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE 295
           V VL+ACAH G +E G +    +++ HG+         ++D+ ++ G L +A+ + + + 
Sbjct: 340 VNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMP 399

Query: 296 KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKW 355
                                             + P+     ++L AC   G L+LG+ 
Sbjct: 400 ----------------------------------MSPDAAVLGALLGACRIHGNLELGEE 425

Query: 356 IHAYIDKNHQKLNNVSLWTSLIDMYAKCG---NIKAAEQVFDGMGYK 399
           +   + +   +  N   +  L +MYA CG    +    ++ D  G K
Sbjct: 426 VGNRVIELDPE--NSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVK 470



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 145/327 (44%), Gaps = 40/327 (12%)

Query: 242 ACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDM--YSKCGDLVKARDLFESIEKRDV 299
           AC+ M  ++  +   SL+   GL +N H  + +      SK GD+  A  LF ++   D 
Sbjct: 11  ACSSMAEVKQQH---SLLLRLGLSTNNHAMSRIFTFCSLSKHGDINYALKLFTTLPNPDT 67

Query: 300 ISWNVMIGGYTHTSDYKE-ALMLFRQMLQSNIEPNDVTFLSVLPAC----------AYLG 348
             +N +   +   S     +L+ +  MLQ  + PN  TF S++ AC          A++ 
Sbjct: 68  FLYNTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACKLEEEAKQLHAHVL 127

Query: 349 ALDLG-------KWIHAY-----IDKNHQKL-----NNVSLWTSLIDMYAKCGNIKAAEQ 391
               G         IH Y     +D   +        NV  WTSL+  Y++ G +  A +
Sbjct: 128 KFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFR 187

Query: 392 VFDGM-GYKTLASWNAMISGLAMHGKADKALSLFSRM-IGEGLQPDDITFVGVLSACNHA 449
           VF+ M   K   SWNAMI+      +  +A +LF RM + + ++ D      +LSAC   
Sbjct: 188 VFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGV 247

Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
           G L+ G  + +  ++   I    +    ++D+  + G  D+A  +   +++K  ++ W  
Sbjct: 248 GALEQG-MWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSS-WNC 305

Query: 510 LLGACRVHGRLELGESVAKHLLELEPE 536
           ++G   +HG+   GE   +   E+E E
Sbjct: 306 MIGGFAMHGK---GEDAIRLFKEMEEE 329


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 298/770 (38%), Positives = 419/770 (54%), Gaps = 100/770 (12%)

Query: 36  LLSKCTNMQN----IKQVHSQIIKTGLHNTQFALSKLIEI-------------------- 71
           LL K  N  N     + VH ++IK+GL  + + ++ L+ +                    
Sbjct: 19  LLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLR 78

Query: 72  ---------CAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI 122
                     A S  GD+      F+ + + + V W  +I G+        AI+    M+
Sbjct: 79  TAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMV 138

Query: 123 LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELE 182
             G  P  +T   +L S A    +  GK++H+ ++KLGL  +  V  SL+NMYA+ G+  
Sbjct: 139 KEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPM 198

Query: 183 SARLVFNKSSLRDA-------------------------------VSYTALITGYASRGY 211
            A+ VF++  +RD                                V++ ++I+G+  RGY
Sbjct: 199 MAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGY 258

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
              A  +F +M +R+    P+  T+ +VLSACA++  L +G  + S I   G   +  V 
Sbjct: 259 DLRALDIFSKM-LRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVL 317

Query: 272 NALIDMYSKCG---------------------------------DLVKARDLFESIEKRD 298
           NALI MYS+CG                                 D+ +A+++F S++ RD
Sbjct: 318 NALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRD 377

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
           V++W  MI GY     Y EA+ LFR M+     PN  T  ++L   + L +L  GK IH 
Sbjct: 378 VVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHG 437

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG-YKTLASWNAMISGLAMHGKA 417
              K+ + + +VS+  +LI MYAK GNI +A + FD +   +   SW +MI  LA HG A
Sbjct: 438 SAVKSGE-IYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHA 496

Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
           ++AL LF  M+ EGL+PD IT+VGV SAC HAGL++ GRQYF+ M    KI P L HY C
Sbjct: 497 EEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYAC 556

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537
           MVDL GRAGL  EA+  ++ M ++PD   W SLL ACRVH  ++LG+  A+ LL LEPEN
Sbjct: 557 MVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPEN 616

Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQS 597
            GAY  L+N+Y+  G+W++ A IR  + D  +KK  G S IEV   VH F V D  HP+ 
Sbjct: 617 SGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEK 676

Query: 598 KHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTT 657
             IY  + +I   ++K G+VPDT+ VL+D++EE KE  L HHSEKLAIA+GLIST   TT
Sbjct: 677 NEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTT 736

Query: 658 IRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +RI+KNLRVC +CH+A K ISK+  REII RD  RFHHFKDG CSC DYW
Sbjct: 737 LRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 267/677 (39%), Positives = 403/677 (59%), Gaps = 45/677 (6%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           ++LLSKC++++  KQ+H+QI KTGLH       KL+  CA++    L YAL +F     P
Sbjct: 6   VSLLSKCSSLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPNP 65

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILS-GFVPNTYTFPFILKSCAKISAISEGKQI 152
           +  + N +IR  SLS +P+ ++  ++++       P+++TF F LK+ A    +  G Q+
Sbjct: 66  DTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQL 125

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H+   + G ++  FV T+LI+MYA+ G+  SAR VF++ S  + V++ A++T     G +
Sbjct: 126 HSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDV 185

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           + A+ +F  MP+R                                         NL   N
Sbjct: 186 EGAQDVFGCMPVR-----------------------------------------NLTSWN 204

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            ++  Y+K G+L  AR +F  +  RD +SW+ MI G+ H   + EA   FR++L+  I  
Sbjct: 205 GMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLREEIRT 264

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N+V+   VL ACA  GA + GK +H +++K    L   S+  +LID Y+KCGN+  A  V
Sbjct: 265 NEVSLTGVLSACAQAGAFEFGKILHGFVEKA-GFLYVGSVNNALIDTYSKCGNVAMARLV 323

Query: 393 FDGMGY-KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           F  M   +++ SW ++I+GLAMHG  ++A+ LF  M   G++PD ITF+ +L AC+H+GL
Sbjct: 324 FQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGL 383

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           ++ G   F+ M   Y I P ++HYGCMVDL GRA    +A   +  M + P+A IW +LL
Sbjct: 384 VEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLL 443

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
           GAC +HG +E+ E V   L E++P+N G +VLLSN+YA AG+W DV++IR  + +  MKK
Sbjct: 444 GACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKK 503

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE-KSGFVPDTSEVLYDMDEE 630
            PG S IE+  V++ F+ G+K +  ++  +E L EI   L  ++G+ P    VL+D++EE
Sbjct: 504 TPGWSMIEIDKVIYGFVAGEKPNEVTEEAHEKLREIMLRLRTEAGYAPQLRSVLHDIEEE 563

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KE ++S HSEKLA A+G+     G  +RIVKNLRVCG+CH+  KLISK++  EII RDR
Sbjct: 564 EKEDSVSKHSEKLAAAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDR 623

Query: 691 NRFHHFKDGNCSCNDYW 707
           +RFH FKDG CSC DYW
Sbjct: 624 SRFHSFKDGFCSCRDYW 640


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 271/678 (39%), Positives = 405/678 (59%), Gaps = 36/678 (5%)

Query: 58  LHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKF 117
           L N Q AL  +   C      ++  A  +F+ ++E + V W  +I G++       ++  
Sbjct: 192 LKNLQMALVDMYVKCR-----EIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVL 246

Query: 118 YVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ 177
           + +M   G VP+      ++ +CAK+ A+ + + I  ++ +   + D  + T++I+MYA+
Sbjct: 247 FEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAK 306

Query: 178 NGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVV 237
            G +ESAR +F++   ++ +S++A+I  Y   G    A  LF  M       +P++ T+ 
Sbjct: 307 CGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMML--SSGMLPDKITLA 364

Query: 238 TVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR 297
           ++L AC +  +L     V +    HG+  NL V N L+  YS    L  A  LF+ +  R
Sbjct: 365 SLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVR 424

Query: 298 DVISWNVMIGGYTHTSDY----------------------------KEALMLFRQMLQSN 329
           D +SW+VM+GG+    DY                             E+L+LF +M +  
Sbjct: 425 DSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEG 484

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           + P+ V  ++V+ ACA LGA+   + I  YI +   +L+ V L T++IDM+AKCG +++A
Sbjct: 485 VVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLD-VILGTAMIDMHAKCGCVESA 543

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
            ++FD M  K + SW+AMI+    HG+  KAL LF  M+  G+ P+ IT V +L AC+HA
Sbjct: 544 REIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHA 603

Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
           GL++ G ++F+ M +DY +   ++HY C+VDLLGRAG  DEA  L+++M ++ D  +W +
Sbjct: 604 GLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGA 663

Query: 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
            LGACR H  + L E  A  LLEL+P+NPG Y+LLSN+YA AGRW+DVA  R  ++ + +
Sbjct: 664 FLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRL 723

Query: 570 KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE 629
           KK+PG + IEV +  H+F VGD  HP+SK IYEML  +   LE  G+VPDT+ VL+D+DE
Sbjct: 724 KKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDE 783

Query: 630 EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
           E K G L  HSEKLAIA+GLI+T   T IRI+KNLRVCG+CH+  KL+S I  R II RD
Sbjct: 784 ELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRD 843

Query: 690 RNRFHHFKDGNCSCNDYW 707
            NRFHHFK+G CSC DYW
Sbjct: 844 ANRFHHFKEGACSCGDYW 861



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 145/535 (27%), Positives = 251/535 (46%), Gaps = 63/535 (11%)

Query: 13  SILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEIC 72
           S  HF    +P +        ++ L  C N+  ++QVH+Q    G+       +KLI   
Sbjct: 71  SKFHFLQRLNPKF-------YISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFY 123

Query: 73  AVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYT 132
           +     D +Y L  F+ +   + V W+ ++ G +     +     +  +I  G  P+ YT
Sbjct: 124 SYYRALDDAYGL--FDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYT 181

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
            PF++++C  +  +                       +L++MY +  E+E AR +F+K  
Sbjct: 182 LPFVIRACRDLKNL---------------------QMALVDMYVKCREIEDARFLFDKMQ 220

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
            RD V++T +I GYA  G  +++  LF++M  REE  VP++  +VTV+ ACA +G++   
Sbjct: 221 ERDLVTWTVMIGGYAECGKANESLVLFEKM--REEGVVPDKVAMVTVVFACAKLGAMHKA 278

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
             +   I+      ++ +  A+IDMY+KCG +  AR++F+ +E+++VISW+ MI  Y + 
Sbjct: 279 RIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH 338

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
              ++AL LFR ML S + P+ +T  S+L AC     L   + +HA     H  L N+ +
Sbjct: 339 GQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASV-HGMLQNLIV 397

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLA-------------------- 412
              L+  Y+    +  A  +FDGM  +   SW+ M+ G A                    
Sbjct: 398 ANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGA 457

Query: 413 --------MHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
                     G A+++L LF +M  EG+ PD +  V V+ AC   G +   R   +  IQ
Sbjct: 458 RPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKART-IDDYIQ 516

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
             K    +     M+D+  + G  + A  +   ME K +   W++++ A   HG+
Sbjct: 517 RKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEK-NVISWSAMIAAYGYHGQ 570


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 258/598 (43%), Positives = 373/598 (62%), Gaps = 36/598 (6%)

Query: 141 AKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYT 200
           A  S      ++HA V++ GL+SD  V   L   YA +G L+ +  +  ++     + YT
Sbjct: 32  AACSTARRASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDPTTIFYT 91

Query: 201 ALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE 260
           + I  ++SRG       L  +M    E  +P   T+   L AC     L LG  + +   
Sbjct: 92  SAIHAHSSRGLHLPGLALLSDM--LSEGLLPTAHTLSASLPACR---GLSLGRALHAYAF 146

Query: 261 GHGLGSNLHVTNALIDMY-------------------------------SKCGDLVKARD 289
              L  + +V  AL+ MY                               +  G L  AR 
Sbjct: 147 KLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARR 206

Query: 290 LFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA 349
           LF+ + ++D I WN MI GYT      EAL LFR+ML+S+ EP++VT + VL A A LG 
Sbjct: 207 LFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGT 266

Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
           ++ GKW+H+Y+  +     NV + T+L+DMY KCG+++ A  VF G+G K +  WNAMI+
Sbjct: 267 VESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMIN 326

Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS 469
           G AMHG + KAL +F ++  +GL P DITF+G+L+AC+H+GL++ GR +F +M  +Y I 
Sbjct: 327 GYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGID 386

Query: 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKH 529
           PK++HYGCMVDLLGRAGL +EA  L++++ + PDA +W SLL ACR+H  + LG+ +A  
Sbjct: 387 PKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRIADF 446

Query: 530 LLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLV 589
           L+     N G Y+LLSN+YA  G+W++VA +R+ +   G++K PGCS+IE+   V+EF+ 
Sbjct: 447 LVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYEFVA 506

Query: 590 GDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGL 649
           GD  HP +  IY MLD+++AL+++ G VP T  VL+D+DE  KE AL+ HSEKLA+A+GL
Sbjct: 507 GDMSHPCTDEIYAMLDKMNALVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLAVAFGL 566

Query: 650 ISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           IS++PG+TI+IVKNLR C +CH+  KLISKI +R+I+ RDRNRFHHF DG+C+C DYW
Sbjct: 567 ISSRPGSTIKIVKNLRACSDCHAVLKLISKITSRKIVFRDRNRFHHFVDGSCTCGDYW 624



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 124/461 (26%), Positives = 225/461 (48%), Gaps = 45/461 (9%)

Query: 7   SLTLSPSILHFPPSSDPP--YKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFA 64
           S  + PS+    P+SD    +  L    + +LL+ C+  +   ++H+ +++ GL + +  
Sbjct: 2   SAAVLPSV---APASDSGGHHGALTADRAASLLAACSTARRASELHAAVVRKGLDSDRAV 58

Query: 65  LSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILS 124
             +L    A S  G L ++L +    ++P  + + + I  HS     +  +     M+  
Sbjct: 59  AFRLQRAYAAS--GRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSE 116

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
           G +P  +T    L +C     +S G+ +HA+  KL L  D +V T+L++MYA+ G+  +A
Sbjct: 117 GLLPTAHTLSASLPAC---RGLSLGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAA 173

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV-------------- 230
           R +F++      VS TA++T YA+ G LDDAR+LFD +P   ++F+              
Sbjct: 174 RALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLP--RKDFICWNAMIDGYTQHGK 231

Query: 231 -----------------PNESTVVTVLSACAHMGSLELGNWVCSLIE-GHGLGSNLHVTN 272
                            P+E TVV VLSA A +G++E G W+ S ++    +  N+ V  
Sbjct: 232 PNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVAT 291

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           AL+DMY KCG L  A  +F  I  +D++ WN MI GY    D ++AL +F Q+    + P
Sbjct: 292 ALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWP 351

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
            D+TF+ +L AC++ G ++ G+     ++  +     +  +  ++D+  + G I+ A  +
Sbjct: 352 TDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHL 411

Query: 393 FDGMGYKTLAS-WNAMISGLAMHGKADKALSLFSRMIGEGL 432
              +     A  W ++++   +H        +   ++  GL
Sbjct: 412 VQSLTITPDAVMWVSLLAACRLHKNMALGQRIADFLVANGL 452


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 264/585 (45%), Positives = 362/585 (61%), Gaps = 12/585 (2%)

Query: 128 PNTYTFPFILKSCAKIS-AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARL 186
           P+  T P  LKS +++   +  G+Q+HA  LKL   ++P V TSL+++YA+ G L  A+ 
Sbjct: 68  PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 127

Query: 187 VFNKSSLRDAVSYTALITGYASRGYLDDA----RQLFDEMPIREENFVPNESTVVTVLSA 242
           VF++      V +TALIT Y   G L +A    R  F           P+  T V VL+A
Sbjct: 128 VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAF------ANGMRPDSFTAVRVLTA 181

Query: 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
           CA +  L  G  V    E  G+  ++ V  A +D+Y KCG++ KAR++F+ +  +D ++W
Sbjct: 182 CARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAW 241

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
             M+GGY      +EAL LF  M    ++P+       L AC  LGALDLG+     +D 
Sbjct: 242 GAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDW 301

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALS 422
           + + L+N  L T+LIDMYAKCG+   A  VF  M  K +  WNAMI GL M G    A +
Sbjct: 302 D-EFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFA 360

Query: 423 LFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482
           L  +M   G++ +D TF+G+L +C H GL+  GR+YF+ M + Y ISP+++HYGCMVDLL
Sbjct: 361 LVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLL 420

Query: 483 GRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV 542
            RAGL  EA  L+  M M  +A I  +LLG C++H   EL E V K L+ LEP N G YV
Sbjct: 421 SRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYV 480

Query: 543 LLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYE 602
           +LSN+Y+  GRW+D A +R  +  KG++KVP CS +E    VHEF VGDK HP S  IY+
Sbjct: 481 MLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYK 540

Query: 603 MLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVK 662
            LDE+   ++  G+ P T  V++D+++E KE  L HHSEKLAIA+ L+ T PG TIR+ K
Sbjct: 541 KLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTK 600

Query: 663 NLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           NLRVC +CH+A KL+S+I +REII RD NRFH F+DG+CSCNDYW
Sbjct: 601 NLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 198/383 (51%), Gaps = 5/383 (1%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +Q+H++ +K   H     L+ L+ + A    G L  A  VF+ +  P+ V W  +I  + 
Sbjct: 91  EQLHARSLKLPSHTNPHVLTSLLSLYA--KCGLLHRAQRVFDEMPHPSTVPWTALITAYM 148

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +     A+        +G  P+++T   +L +CA+I+ ++ G+ +     + G+    F
Sbjct: 149 DAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVF 208

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V T+ +++Y + GE+  AR VF+K   +DAV++ A++ GYAS G+  +A  LF  + ++ 
Sbjct: 209 VATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLF--LAMQA 266

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           E   P+   V   LSAC  +G+L+LG     +++      N  +  ALIDMY+KCG  V+
Sbjct: 267 EGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVE 326

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A  +F+ + K+D+I WN MI G   T   K A  L  QM +S ++ ND TF+ +L +C +
Sbjct: 327 AWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTH 386

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WN 405
            G +  G+     + K +     +  +  ++D+ ++ G ++ A Q+ D M     A    
Sbjct: 387 TGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILG 446

Query: 406 AMISGLAMHGKADKALSLFSRMI 428
           A++ G  +H   + A  +  ++I
Sbjct: 447 ALLGGCKIHRNTELAEHVLKQLI 469


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 267/626 (42%), Positives = 390/626 (62%), Gaps = 35/626 (5%)

Query: 114 AIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLIN 173
           A+  Y RM+  G +P+ YTFP +LK+ A+ S+ +  + +HAHV+K G+  +  V TSL+ 
Sbjct: 27  AVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVT 86

Query: 174 MYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
            YA  G+  +AR + ++      V + ALI+G+       +A   F +M        P  
Sbjct: 87  AYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMA--RAGAAPTP 144

Query: 234 STVVTVLSACAH-MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV------- 285
            T V+VLSAC    G + LG  V   + G G+  +L V NAL+DMY++C D+        
Sbjct: 145 VTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFD 204

Query: 286 ------------------------KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALML 321
                                   +ARDLF  + +RD +SW  MI GY   + ++EAL +
Sbjct: 205 GMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEM 264

Query: 322 FRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381
           FR+M  SN+  ++ T +SV+ ACA LGAL++G+W+  Y+ +   K++   +  +LIDMY+
Sbjct: 265 FREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAF-VGNALIDMYS 323

Query: 382 KCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVG 441
           KCG+I+ A  VF  M ++   +W A+I GLA++G  ++A+ +F RMIG    PD++TF+G
Sbjct: 324 KCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIG 383

Query: 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK 501
           VL+AC HAGL+D GR++F +M + Y I+P + HYGC++DL GRAG   EA   +  M M 
Sbjct: 384 VLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMT 443

Query: 502 PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIR 561
           P++ IW +LL ACRVHG  E+GE V + LL+++PEN   Y LLSN+YA   RW+DV  +R
Sbjct: 444 PNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLR 503

Query: 562 TRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTS 621
             + +KG+KK PGCS IE+  ++HEF+ GD+ HP SK IY  L+ I   L   G+ PD +
Sbjct: 504 HTIMEKGIKKEPGCSLIEMNGIIHEFVAGDQSHPMSKEIYCKLESIINDLNNVGYFPDVT 563

Query: 622 EVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIF 681
           EV  ++ EE K+  L  HSEKLAIA+ L+S++P T IRIVKNLR+C +CH+A KLIS+++
Sbjct: 564 EVFVEVAEEEKQKVLFWHSEKLAIAFALLSSEPNTVIRIVKNLRMCLDCHNAIKLISRLY 623

Query: 682 NREIIARDRNRFHHFKDGNCSCNDYW 707
            RE++ RDR RFHHF+ G CSC DYW
Sbjct: 624 GREVVVRDRTRFHHFRHGFCSCKDYW 649



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 132/474 (27%), Positives = 230/474 (48%), Gaps = 41/474 (8%)

Query: 32  PSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           P L  +++ ++   ++ VH+ ++K G+       + L+   A    G  + ALL      
Sbjct: 48  PLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSERERD 107

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA-ISEGK 150
            P  V+WN +I GH+       A   +V M  +G  P   T+  +L +C K +  +  G 
Sbjct: 108 TP--VVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGM 165

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           Q+H  V+  G+  D  V  +L++MYA+  ++ESA  +F+   +R  VS+T+L++G    G
Sbjct: 166 QVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLG 225

Query: 211 YLDDARQLFDEMPIRE-----------------------------ENFVPNESTVVTVLS 241
            +D+AR LF  MP R+                              N   +E T+V+V++
Sbjct: 226 RVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVIT 285

Query: 242 ACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVIS 301
           ACA +G+LE+G WV   +   G+  +  V NALIDMYSKCG + +A D+F+ +  RD  +
Sbjct: 286 ACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFT 345

Query: 302 WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361
           W  +I G       +EA+ +F +M+  +  P++VTF+ VL AC + G +D G+     + 
Sbjct: 346 WTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMR 405

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHGKADKA 420
           + +    NV  +  +ID++ + G I  A    D M     ++ W  +++   +HG ++  
Sbjct: 406 ETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIG 465

Query: 421 LSLFSRMIGEGLQPDDITFVGVLS----ACNHAGLLDIGRQYFNAMIQDYKISP 470
             +  R++   + P++ T   +LS     CN     D+ R     M +  K  P
Sbjct: 466 ELVTERLL--QMDPENSTVYTLLSNIYAKCNR--WEDVRRLRHTIMEKGIKKEP 515


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 286/737 (38%), Positives = 423/737 (57%), Gaps = 76/737 (10%)

Query: 42  NMQNIKQVHSQIIKTG--LH--NTQFALSKLIEICAVSPFGDLSYALLVFETIREP-NQV 96
           +++   ++H+ ++ +G  LH  +    L+ L+     +    L YAL +F+  R P +  
Sbjct: 11  SVRQAAELHAVLVASGRLLHPPSASHLLNSLVNCFTPTDPLHLRYALCLFD--RMPCSTF 68

Query: 97  IWNNIIRG-HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA-ISEGKQIHA 154
           +++  +R     SS P   +  Y RM  +G   + +TF F+ K CA+  A +   + +HA
Sbjct: 69  LFDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRAHVLLCQMLHA 128

Query: 155 HVLKLGLESD-PFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
              +  L S  P V   +I+MY + G    AR  F+   ++DAV++T +I+G A  G LD
Sbjct: 129 ACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLD 188

Query: 214 DARQLFDEMPIR-----------------------------EENFVPNESTVVTVLSACA 244
           DA  L    P R                              +   P+E TV+ +LSACA
Sbjct: 189 DAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACA 248

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA----------------- 287
            +  L  G  +  L+   G+  +  +  ALIDMY+KCGD+ +A                 
Sbjct: 249 QLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWN 308

Query: 288 ---------------RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
                          R LF+ +E RD++++N +I GY H    +EAL+LF QM + ++  
Sbjct: 309 AMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRA 368

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW--TSLIDMYAKCGNIKAAE 390
           ++ T +S+L ACA LGAL  G+ +HA I+   Q+L  V ++  T+L+DMY KCG ++ A 
Sbjct: 369 DNFTMVSLLTACASLGALPQGRALHACIE---QRLVEVDIYLGTALLDMYLKCGRVEEAS 425

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
            VF  M  + + +W+AMI+GLA +G    AL  F  M  +G QP+ +T++ +L+AC+H+ 
Sbjct: 426 LVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHSC 485

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           LLD GR YF  M   + I P ++HYGCM+DLLGR+GL DEA  L++TM M+P+A IW S+
Sbjct: 486 LLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASI 545

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           L ACRVH    L  + A+HLL+LEP+    YV L N+Y  + +W+D + IR  + ++G+K
Sbjct: 546 LSACRVHKDANLARNAAEHLLKLEPDEDAVYVQLYNIYIDSRQWEDASQIRRLMEERGVK 605

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           K  G SSI V   VH+F+V D+ HPQ   I  M++EI   L+  G+ P TS++  D+DEE
Sbjct: 606 KAAGYSSITVAGQVHKFIVCDRTHPQIMEITAMMEEITRRLKSVGYSPITSQITVDVDEE 665

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KE AL  HSEK+AIA+GLIS  P   + I+KNLRVC +CHSA KLIS+I+NREII RDR
Sbjct: 666 EKEHALLAHSEKIAIAFGLISLAPNLPLHIIKNLRVCEDCHSAIKLISRIWNREIIVRDR 725

Query: 691 NRFHHFKDGNCSCNDYW 707
           +RFHHF+DG CSCND+W
Sbjct: 726 SRFHHFRDGTCSCNDFW 742


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 261/564 (46%), Positives = 359/564 (63%), Gaps = 38/564 (6%)

Query: 175 YAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNES 234
           YA  G L+ +  +F ++       +TA+I G+A RG  + A   + +M    +   PN  
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQM--LTQGVEPNAF 76

Query: 235 TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA------- 287
           T  ++L  C     +E G  + S     G  S+L+V   L+D+Y++ GD+V A       
Sbjct: 77  TFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTM 132

Query: 288 ------------------------RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFR 323
                                   R LF+ +E+RD + WNVMI GYT      EAL+LFR
Sbjct: 133 PEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFR 192

Query: 324 QMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383
           +ML++  +PN+VT LSVL AC  LGAL+ G+W+H+YI+ N  + N V + T+L+DMY+KC
Sbjct: 193 RMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFN-VHVGTALVDMYSKC 251

Query: 384 GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
           G+++ A  VFD +  K + +WN+MI G AM G + +AL LF  M   GL P +ITF+G+L
Sbjct: 252 GSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGIL 311

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
           SAC H+G +  G   FN M  +Y I PK++HYGCMV+LLGRAG  ++A  L+K M ++PD
Sbjct: 312 SACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPD 371

Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563
             +W +LLGACR+HG++ LGE + + L++    N G Y+LLSN+YA  G WD VA +RT 
Sbjct: 372 PVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTM 431

Query: 564 LNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEV 623
           + D G+KK PGCSSIEV + VHEFL G   HP+ K IY ML+EI+  L+  G+ P T  V
Sbjct: 432 MKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIV 491

Query: 624 LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNR 683
           L+D+ E  KE +L  HSEKLAIA+GLI+T+PGTTI+IVKNLRVC +CH  TKLISKI  R
Sbjct: 492 LHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGR 551

Query: 684 EIIARDRNRFHHFKDGNCSCNDYW 707
           +I+ RDRNRFHHF +G+CSC DYW
Sbjct: 552 KIVVRDRNRFHHFVNGSCSCGDYW 575



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 127/372 (34%), Positives = 201/372 (54%), Gaps = 34/372 (9%)

Query: 75  SPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFP 134
           +  G L Y++ +F   + P+   W  II GH+L      A+ FY +M+  G  PN +TF 
Sbjct: 20  ASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFS 79

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
            ILK C     I  GK +H+  +KLG +SD +V T L+++YA+ G++ SA+ +F+    +
Sbjct: 80  SILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEK 135

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIRE------------ENFVPNES-------- 234
             VS TA++T YA  G LD AR LFD M  R+            +N +PNE+        
Sbjct: 136 SLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRML 195

Query: 235 ---------TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
                    TV++VLSAC  +G+LE G WV S IE +G+  N+HV  AL+DMYSKCG L 
Sbjct: 196 KAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLE 255

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
            AR +F+ I+ +DV++WN MI GY      +EAL LF+ M +  + P ++TF+ +L AC 
Sbjct: 256 DARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACG 315

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASW 404
           + G +  G  I   +   +     +  +  ++++  + G+++ A ++   M  +     W
Sbjct: 316 HSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLW 375

Query: 405 NAMISGLAMHGK 416
             ++    +HGK
Sbjct: 376 GTLLGACRLHGK 387



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 7/175 (4%)

Query: 34  LALLSKCTNM---QNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           L++LS C  +   ++ + VHS I   G+       + L+++   S  G L  A LVF+ I
Sbjct: 207 LSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDM--YSKCGSLEDARLVFDKI 264

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            + + V WN++I G+++      A++ +  M   G  P   TF  IL +C     ++EG 
Sbjct: 265 DDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGW 324

Query: 151 QIHAHVL-KLGLESDPFVHTSLINMYAQNGELESA-RLVFNKSSLRDAVSYTALI 203
            I   +  + G+E     +  ++N+  + G +E A  LV N +   D V +  L+
Sbjct: 325 DIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLL 379


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 265/612 (43%), Positives = 376/612 (61%), Gaps = 35/612 (5%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P+   +  +++SC K   + +GK++H H+   G     F+   L+ MYA+   L  ++ +
Sbjct: 68  PSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKL 127

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV-------------PNES 234
           F++   RD  S+  LI+GYA  G L +A+ LFD+MP R+ NF              PNE+
Sbjct: 128 FDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERD-NFSWTAMISGYVRHDRPNEA 186

Query: 235 ------------------TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALID 276
                             TV + L+A A +  L +G  +   I   GL S+  V +AL D
Sbjct: 187 LELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSD 246

Query: 277 MYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVT 336
           MY KCG + +AR +F+ +  RD+++W  MI  Y      KE   LF  +L+S I PN+ T
Sbjct: 247 MYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFT 306

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS-LIDMYAKCGNIKAAEQVFDG 395
           F  VL ACA   + +LGK +H Y+ +     +  S   S L+ MY+KCGN+ +AE+VF  
Sbjct: 307 FSGVLNACANQTSEELGKKVHGYMTR--VGFDPFSFAASALVHMYSKCGNMVSAERVFKE 364

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
                L SW ++I+G A +G+ D+A+  F  ++  G QPD ITFVGVLSAC HAGL+D G
Sbjct: 365 TPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKG 424

Query: 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACR 515
             YF+++ + Y ++    HY C++DLL R+G FDEAE ++  M MKPD  +W SLLG CR
Sbjct: 425 LDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCR 484

Query: 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGC 575
           +HG L+L +  A+ L E+EPENP  YV L+N+YA AG W +VA IR  ++D+G+ K PG 
Sbjct: 485 IHGNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGL 544

Query: 576 SSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGA 635
           S I +   VH FLVGD  HP+SK I E L ++   +++ GFVPDT+ VL+D+++E KE  
Sbjct: 545 SWIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMKEEGFVPDTNFVLHDVEDEQKEQN 604

Query: 636 LSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHH 695
           LS+HSEKLA+A+G+IST  GT I++ KNLR C +CH+A K ISKI NR+II RD NRFH 
Sbjct: 605 LSYHSEKLAVAFGIISTPEGTPIKVFKNLRTCVDCHTAIKFISKITNRKIIVRDSNRFHF 664

Query: 696 FKDGNCSCNDYW 707
           F+DG+CSC DYW
Sbjct: 665 FEDGHCSCRDYW 676



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/404 (28%), Positives = 188/404 (46%), Gaps = 33/404 (8%)

Query: 43  MQNIKQVHSQIIKTGLHNTQFALSKLIE-----------------------------ICA 73
           +Q  K+VH  I  +G     F L++L+E                             I  
Sbjct: 86  LQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISG 145

Query: 74  VSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILS-GFVPNTYT 132
            +  G L  A  +F+ + E +   W  +I G+     P  A++ +  M  S     N +T
Sbjct: 146 YAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFT 205

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
               L + A +  +  GK+IH ++++ GL+SD  V ++L +MY + G +E AR +F+K  
Sbjct: 206 VSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMV 265

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
            RD V++TA+I  Y   G   +   LF ++        PNE T   VL+ACA+  S ELG
Sbjct: 266 DRDIVTWTAMIDRYFQDGRRKEGFDLFADL--LRSGIRPNEFTFSGVLNACANQTSEELG 323

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
             V   +   G        +AL+ MYSKCG++V A  +F+   + D+ SW  +I GY   
Sbjct: 324 KKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQN 383

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
               EA+  F  +++S  +P+ +TF+ VL ACA+ G +D G      I + +   +    
Sbjct: 384 GQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADH 443

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHG 415
           +  +ID+ A+ G    AE +   M  K     W +++ G  +HG
Sbjct: 444 YACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHG 487



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 154/305 (50%), Gaps = 9/305 (2%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K++H  I++TGL + +   S L ++      G +  A  +F+ + + + V W  +I  + 
Sbjct: 223 KEIHGYIMRTGLDSDEVVWSALSDM--YGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYF 280

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
                      +  ++ SG  PN +TF  +L +CA  ++   GK++H ++ ++G +   F
Sbjct: 281 QDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSF 340

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
             ++L++MY++ G + SA  VF ++   D  S+T+LI GYA  G  D+A + F E+ ++ 
Sbjct: 341 AASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYF-ELLVKS 399

Query: 227 ENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
               P+  T V VLSACAH G ++ G ++  S+ E +GL         +ID+ ++ G   
Sbjct: 400 GT-QPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFD 458

Query: 286 KARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP-NDVTFLSVLPA 343
           +A ++   +  K D   W  ++GG     + K A      + +  IEP N  T++++   
Sbjct: 459 EAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFE--IEPENPATYVTLANI 516

Query: 344 CAYLG 348
            A  G
Sbjct: 517 YATAG 521


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 264/585 (45%), Positives = 362/585 (61%), Gaps = 12/585 (2%)

Query: 128  PNTYTFPFILKSCAKIS-AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARL 186
            P+  T P  LKS +++   +  G+Q+HA  LKL   ++P V TSL+++YA+ G L  A+ 
Sbjct: 523  PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 582

Query: 187  VFNKSSLRDAVSYTALITGYASRGYLDDA----RQLFDEMPIREENFVPNESTVVTVLSA 242
            VF++      V +TALIT Y   G L +A    R  F           P+  T V VL+A
Sbjct: 583  VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAF------ANGMRPDSFTAVRVLTA 636

Query: 243  CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
            CA +  L  G  V    E  G+  ++ V  A +D+Y KCG++ KAR++F+ +  +D ++W
Sbjct: 637  CARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAW 696

Query: 303  NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
              M+GGY      +EAL LF  M    ++P+       L AC  LGALDLG+     +D 
Sbjct: 697  GAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDW 756

Query: 363  NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALS 422
            + + L+N  L T+LIDMYAKCG+   A  VF  M  K +  WNAMI GL M G    A +
Sbjct: 757  D-EFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFA 815

Query: 423  LFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482
            L  +M   G++ +D TF+G+L +C H GL+  GR+YF+ M + Y ISP+++HYGCMVDLL
Sbjct: 816  LVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLL 875

Query: 483  GRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV 542
             RAGL  EA  L+  M M  +A I  +LLG C++H   EL E V K L+ LEP N G YV
Sbjct: 876  SRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYV 935

Query: 543  LLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYE 602
            +LSN+Y+  GRW+D A +R  +  KG++KVP CS +E    VHEF VGDK HP S  IY+
Sbjct: 936  MLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYK 995

Query: 603  MLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVK 662
             LDE+   ++  G+ P T  V++D+++E KE  L HHSEKLAIA+ L+ T PG TIR+ K
Sbjct: 996  KLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTK 1055

Query: 663  NLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            NLRVC +CH+A KL+S+I +REII RD NRFH F+DG+CSCNDYW
Sbjct: 1056 NLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1100



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 198/383 (51%), Gaps = 5/383 (1%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +Q+H++ +K   H     L+ L+ + A    G L  A  VF+ +  P+ V W  +I  + 
Sbjct: 546 EQLHARSLKLPSHTNPHVLTSLLSLYAKC--GLLHRAQRVFDEMPHPSTVPWTALITAYM 603

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +     A+        +G  P+++T   +L +CA+I+ ++ G+ +     + G+    F
Sbjct: 604 DAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVF 663

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V T+ +++Y + GE+  AR VF+K   +DAV++ A++ GYAS G+  +A  LF  + ++ 
Sbjct: 664 VATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLF--LAMQA 721

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           E   P+   V   LSAC  +G+L+LG     +++      N  +  ALIDMY+KCG  V+
Sbjct: 722 EGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVE 781

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A  +F+ + K+D+I WN MI G   T   K A  L  QM +S ++ ND TF+ +L +C +
Sbjct: 782 AWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTH 841

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WN 405
            G +  G+     + K +     +  +  ++D+ ++ G ++ A Q+ D M     A    
Sbjct: 842 TGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILG 901

Query: 406 AMISGLAMHGKADKALSLFSRMI 428
           A++ G  +H   + A  +  ++I
Sbjct: 902 ALLGGCKIHRNTELAEHVLKQLI 924


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 268/672 (39%), Positives = 407/672 (60%), Gaps = 8/672 (1%)

Query: 38  SKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVI 97
           +K   ++  KQ+H+ +I  G     F  + L+ +   S  G+L +AL +F+T+ + N V 
Sbjct: 16  AKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNM--YSKCGELDHALKLFDTMPQRNLVS 73

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
           W  +I G S +S    AI+ +  M + G VP  + F   +++CA + +I  GKQ+H   L
Sbjct: 74  WTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLAL 133

Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ 217
           K G+ S+ FV ++L +MY++ G +  A  VF +   +D VS+TA+I GY+  G  ++A  
Sbjct: 134 KFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALL 193

Query: 218 LFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDM 277
            F +M   +E    ++  + + L AC  + + + G  V S +   G  S++ V NAL DM
Sbjct: 194 AFKKMI--DEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDM 251

Query: 278 YSKCGDLVKARDLFE-SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVT 336
           YSK GD+  A ++F    E R+V+S+  +I GY  T   ++ L +F ++ +  IEPN+ T
Sbjct: 252 YSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFT 311

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDK-NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
           F S++ ACA   AL+ G  +HA + K N  +   VS  + L+DMY KCG ++ A Q FD 
Sbjct: 312 FSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVS--SILVDMYGKCGLLEQAIQAFDE 369

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
           +G  T  +WN+++S    HG    A+ +F RM+  G++P+ ITF+ +L+ C+HAGL++ G
Sbjct: 370 IGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEG 429

Query: 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACR 515
             YF +M + Y + P  +HY C++DLLGRAG   EA+  +  M  +P+A  W S LGACR
Sbjct: 430 LDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACR 489

Query: 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGC 575
           +HG  E+G+  A+ L++LEP+N GA VLLSN+YA   +W+DV ++R R+ D  +KK+PG 
Sbjct: 490 IHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGY 549

Query: 576 SSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGA 635
           S ++VG   H F   D  HP+   IYE LD +   ++ +G+VP T  V  DMD+  KE  
Sbjct: 550 SWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKL 609

Query: 636 LSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHH 695
           L  HSE++A+A+ LIS   G  I + KNLRVC +CHSA K ISK+  R+II RD +RFHH
Sbjct: 610 LHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHH 669

Query: 696 FKDGNCSCNDYW 707
           F DG+CSC DYW
Sbjct: 670 FTDGSCSCGDYW 681



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 207/392 (52%), Gaps = 8/392 (2%)

Query: 129 NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF 188
           +T     ++++ AK   +  GKQ+HA ++  G     F+   L+NMY++ GEL+ A  +F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 189 NKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS 248
           +    R+ VS+TA+I+G +      +A + F  M I  E  VP +    + + ACA +GS
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGE--VPTQFAFSSAIRACASLGS 121

Query: 249 LELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGG 308
           +E+G  +  L    G+GS L V + L DMYSKCG +  A  +FE +  +D +SW  MI G
Sbjct: 122 IEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDG 181

Query: 309 YTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN 368
           Y+   +++EAL+ F++M+   +  +     S L AC  L A   G+ +H+ + K   + +
Sbjct: 182 YSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFE-S 240

Query: 369 NVSLWTSLIDMYAKCGNIKAAEQVFD-GMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
           ++ +  +L DMY+K G++++A  VF      + + S+  +I G     + +K LS+F  +
Sbjct: 241 DIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVEL 300

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQ-YFNAMIQDYKISPKLQHYGCMVDLLGRAG 486
             +G++P++ TF  ++ AC +   L+ G Q +   M  ++   P +     +VD+ G+ G
Sbjct: 301 RRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSI--LVDMYGKCG 358

Query: 487 LFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           L ++A      +   P    W SL+     HG
Sbjct: 359 LLEQAIQAFDEIG-DPTEIAWNSLVSVFGQHG 389



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 158/349 (45%), Gaps = 36/349 (10%)

Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD 298
           V+   A    L  G  + +L+   G      +TN L++MYSKCG+L  A  LF+++ +R+
Sbjct: 11  VIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRN 70

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
           ++SW  MI G +  S + EA+  F  M      P    F S + ACA LG++++GK +H 
Sbjct: 71  LVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHC 130

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKAD 418
              K     + + + ++L DMY+KCG +  A +VF+ M  K   SW AMI G +  G+ +
Sbjct: 131 LALKFGIG-SELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFE 189

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF---------------NAMI 463
           +AL  F +MI E +  D       L AC        GR                  NA+ 
Sbjct: 190 EALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALT 249

Query: 464 QDYKISPKLQ----------------HYGCMVDLLGRAGLFDEAEAL---LKTMEMKPDA 504
             Y  +  ++                 Y C++D        ++  ++   L+   ++P+ 
Sbjct: 250 DMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNE 309

Query: 505 AIWTSLLGACRVHGRLELGESVAKHLLELE-PENPGAYVLLSNMYAGAG 552
             ++SL+ AC     LE G  +   ++++   E+P    +L +MY   G
Sbjct: 310 FTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCG 358


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  513 bits (1320), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 264/585 (45%), Positives = 362/585 (61%), Gaps = 12/585 (2%)

Query: 128  PNTYTFPFILKSCAKIS-AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARL 186
            P+  T P  LKS +++   +  G+Q+HA  LKL   ++P V TSL+++YA+ G L  A+ 
Sbjct: 547  PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 606

Query: 187  VFNKSSLRDAVSYTALITGYASRGYLDDA----RQLFDEMPIREENFVPNESTVVTVLSA 242
            VF++      V +TALIT Y   G L +A    R  F           P+  T V VL+A
Sbjct: 607  VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAF------ANGMRPDSFTAVRVLTA 660

Query: 243  CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
            CA +  L  G  V    E  G+  ++ V  A +D+Y KCG++ KAR++F+ +  +D ++W
Sbjct: 661  CARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAW 720

Query: 303  NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
              M+GGY      +EAL LF  M    ++P+       L AC  LGALDLG+     +D 
Sbjct: 721  GAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDW 780

Query: 363  NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALS 422
            + + L+N  L T+LIDMYAKCG+   A  VF  M  K +  WNAMI GL M G    A +
Sbjct: 781  D-EFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFA 839

Query: 423  LFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482
            L  +M   G++ +D TF+G+L +C H GL+  GR+YF+ M + Y ISP+++HYGCMVDLL
Sbjct: 840  LVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLL 899

Query: 483  GRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV 542
             RAGL  EA  L+  M M  +A I  +LLG C++H   EL E V K L+ LEP N G YV
Sbjct: 900  SRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYV 959

Query: 543  LLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYE 602
            +LSN+Y+  GRW+D A +R  +  KG++KVP CS +E    VHEF VGDK HP S  IY+
Sbjct: 960  MLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYK 1019

Query: 603  MLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVK 662
             LDE+   ++  G+ P T  V++D+++E KE  L HHSEKLAIA+ L+ T PG TIR+ K
Sbjct: 1020 KLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTK 1079

Query: 663  NLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            NLRVC +CH+A KL+S+I +REII RD NRFH F+DG+CSCNDYW
Sbjct: 1080 NLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1124



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 198/383 (51%), Gaps = 5/383 (1%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +Q+H++ +K   H     L+ L+ + A    G L  A  VF+ +  P+ V W  +I  + 
Sbjct: 570 EQLHARSLKLPSHTNPHVLTSLLSLYAKC--GLLHRAQRVFDEMPHPSTVPWTALITAYM 627

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +     A+        +G  P+++T   +L +CA+I+ ++ G+ +     + G+    F
Sbjct: 628 DAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVF 687

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V T+ +++Y + GE+  AR VF+K   +DAV++ A++ GYAS G+  +A  LF  + ++ 
Sbjct: 688 VATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLF--LAMQA 745

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           E   P+   V   LSAC  +G+L+LG     +++      N  +  ALIDMY+KCG  V+
Sbjct: 746 EGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVE 805

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A  +F+ + K+D+I WN MI G   T   K A  L  QM +S ++ ND TF+ +L +C +
Sbjct: 806 AWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTH 865

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WN 405
            G +  G+     + K +     +  +  ++D+ ++ G ++ A Q+ D M     A    
Sbjct: 866 TGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILG 925

Query: 406 AMISGLAMHGKADKALSLFSRMI 428
           A++ G  +H   + A  +  ++I
Sbjct: 926 ALLGGCKIHRNTELAEHVLKQLI 948


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  513 bits (1320), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 287/701 (40%), Positives = 415/701 (59%), Gaps = 15/701 (2%)

Query: 16  HFPPSSDPPYKLLQNQPSLA-------LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKL 68
           HF  + D  Y+LL      A       +L  C  + + +++H  + K G     F  + L
Sbjct: 154 HFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVDGRKIHCWVFKLGFQWDVFVAASL 213

Query: 69  IEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVP 128
           I +   S FG +  A  +F+ +   +   WN +I G   + +   A+     M L G   
Sbjct: 214 IHM--YSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINM 271

Query: 129 NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF 188
           ++ T   IL  CA++  IS    IH +V+K GLE + FV  +LINMYA+ G L  A+ VF
Sbjct: 272 DSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVF 331

Query: 189 NKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS 248
            +  LRD VS+ ++I  Y        AR  F +M +      P+  T+V++ S  A    
Sbjct: 332 QQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQL--NGLEPDLLTLVSLASIAAQSRD 389

Query: 249 LELGNWVCSLIEGHG-LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG 307
            +    V   I   G L   + + NA++DMY+K G +  A  +F  I  +DV+SWN +I 
Sbjct: 390 YKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLIS 449

Query: 308 GYTHTSDYKEALMLFRQMLQ-SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK 366
           GYT      EA+ ++R M +   I+ N  T++S+L A A++GAL  G  IH ++ K +  
Sbjct: 450 GYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLH 509

Query: 367 LNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSR 426
           L+ V + T LID+Y KCG +  A  +F  +  ++   WNA+IS   +HG  +KAL LF  
Sbjct: 510 LD-VFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFRE 568

Query: 427 MIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAG 486
           M  EG++PD +TF+ +LSAC+H+GL+D G+ +F+ M Q+Y I P L+HYGCMVDLLGRAG
Sbjct: 569 MQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLM-QEYGIKPSLKHYGCMVDLLGRAG 627

Query: 487 LFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSN 546
             + A   +K M + PDA+IW +LLGACR+HG +ELG+  +  L E++ EN G YVLLSN
Sbjct: 628 FLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSN 687

Query: 547 MYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDE 606
           +YA  G+W+ V  +R+   ++G+KK PG SSIEV   V  F  G++ HP+ K IY  L  
Sbjct: 688 IYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAELRI 747

Query: 607 IDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRV 666
           + A ++  G++PD S VL D++E+ KE  L+ HSE+LAIA+G+IST P + IRI KNLRV
Sbjct: 748 LTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSAIRIFKNLRV 807

Query: 667 CGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           CG+CH+ATK IS+I  REI+ RD  RFHHFK+G CSC DYW
Sbjct: 808 CGDCHNATKFISRITEREIVVRDSKRFHHFKNGICSCGDYW 848



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 152/507 (29%), Positives = 262/507 (51%), Gaps = 20/507 (3%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           +L   CT     K++H+ ++ +G   + F   +L+ + A    GD+S +   F+ I+  +
Sbjct: 81  SLFDSCTKTLLAKRLHALLVVSGKIQSNFISIRLVNLYA--SLGDVSLSRGTFDQIQRKD 138

Query: 95  QVIWNNIIRGHSLSSSPVVAIK-FYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
              WN++I  +  +     AI  FY  ++++ F  + YTFP +LK+C     + +G++IH
Sbjct: 139 VYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKAC---QTLVDGRKIH 195

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
             V KLG + D FV  SLI+MY++ G +  AR +F+    RD  S+ A+I+G    G   
Sbjct: 196 CWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAA 255

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
            A  + DEM  R E    +  TV ++L  CA +G +     +   +  HGL   L V+NA
Sbjct: 256 QALDVLDEM--RLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNA 313

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           LI+MY+K G+L  A+ +F+ +  RDV+SWN +I  Y    D   A   F +M  + +EP+
Sbjct: 314 LINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPD 373

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
            +T +S+    A        + +H +I +    +  V +  +++DMYAK G I +A +VF
Sbjct: 374 LLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVF 433

Query: 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE--GLQPDDITFVGVLSACNHAGL 451
           + +  K + SWN +ISG   +G A +A+ ++ RM+ E   ++ +  T+V +L+A  H G 
Sbjct: 434 NLIPVKDVVSWNTLISGYTQNGLASEAIEVY-RMMEECREIKLNQGTWVSILAAYAHVGA 492

Query: 452 LDIGRQYFNAMIQDYKISPKLQHY--GCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
           L  G +    +I   K +  L  +   C++DL G+ G   +A  L   +  +  +  W +
Sbjct: 493 LQQGMRIHGHLI---KTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVP-RESSVPWNA 548

Query: 510 LLGACRVHGRLELGESVAKHLLELEPE 536
           ++    +HG    GE   K   E++ E
Sbjct: 549 IISCHGIHGH---GEKALKLFREMQDE 572



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 197/423 (46%), Gaps = 13/423 (3%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           F  +  SC K       K++HA ++  G     F+   L+N+YA  G++  +R  F++  
Sbjct: 79  FNSLFDSCTKTLL---AKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQ 135

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHM-GSLEL 251
            +D  ++ ++I+ Y   G+  +A   F ++ +  + F  +  T   VL AC  +    ++
Sbjct: 136 RKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTK-FQADFYTFPPVLKACQTLVDGRKI 194

Query: 252 GNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311
             WV  L    G   ++ V  +LI MYS+ G +  AR LF+ +  RD+ SWN MI G   
Sbjct: 195 HCWVFKL----GFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQ 250

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
             +  +AL +  +M    I  + VT  S+LP CA LG +     IH Y+ K+  +   + 
Sbjct: 251 NGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEF-ELF 309

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
           +  +LI+MYAK GN+  A++VF  M  + + SWN++I+    +     A   F +M   G
Sbjct: 310 VSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNG 369

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
           L+PD +T V + S    +      R     +++   +   +     ++D+  + G+ D A
Sbjct: 370 LEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSA 429

Query: 492 EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE--PENPGAYVLLSNMYA 549
             +   + +K D   W +L+     +G       V + + E      N G +V +   YA
Sbjct: 430 HKVFNLIPVK-DVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYA 488

Query: 550 GAG 552
             G
Sbjct: 489 HVG 491


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  513 bits (1320), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 280/708 (39%), Positives = 410/708 (57%), Gaps = 51/708 (7%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +  H+  + TG  +  F  + L+ +   S    LS A  VF+ +   + V WN+II  ++
Sbjct: 147 ESAHALSLVTGFISNVFVGNALVAM--YSRCRSLSDARKVFDEMSVWDVVSWNSIIESYA 204

Query: 107 LSSSPVVAIKFYVRMILS-GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
               P VA++ + RM    G  P+  T   +L  CA +   S GKQ+H   +   +  + 
Sbjct: 205 KLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNM 264

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP-- 223
           FV   L++MYA+ G ++ A  VF+  S++D VS+ A++ GY+  G  +DA +LF++M   
Sbjct: 265 FVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEE 324

Query: 224 -------------------------------IREENFVPNESTVVTVLSACAHMGSLELG 252
                                          +      PNE T+++VLS CA +G+L  G
Sbjct: 325 KIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHG 384

Query: 253 NWV-CSLIE------GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI--EKRDVISWN 303
             + C  I+       +G G    V N LIDMY+KC  +  AR +F+S+  ++RDV++W 
Sbjct: 385 KEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWT 444

Query: 304 VMIGGYTHTSDYKEALMLFRQMLQSNIE--PNDVTFLSVLPACAYLGALDLGKWIHAYID 361
           VMIGGY+   D  +AL L  +M + + +  PN  T    L ACA L AL +GK IHAY  
Sbjct: 445 VMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYAL 504

Query: 362 KNHQKLNNVSLWTS--LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADK 419
           +N Q  N V L+ S  LIDMYAKCG+I  A  VFD M  K   +W ++++G  MHG  ++
Sbjct: 505 RNQQ--NAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEE 562

Query: 420 ALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479
           AL +F  M   G + D +T + VL AC+H+G++D G +YFN M   + +SP  +HY C+V
Sbjct: 563 ALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLV 622

Query: 480 DLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG 539
           DLLGRAG  + A  L++ M M+P   +W + L  CR+HG++ELGE  A+ + EL   + G
Sbjct: 623 DLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDG 682

Query: 540 AYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKH 599
           +Y LLSN+YA AGRW DV  IR+ +  KG+KK PGCS +E       F VGDK HP +K 
Sbjct: 683 SYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKE 742

Query: 600 IYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIR 659
           IY++L +    ++  G+VP+T   L+D+D+E K+  L  HSEKLA+AYG+++T  G  IR
Sbjct: 743 IYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIR 802

Query: 660 IVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           I KNLRVCG+CH+A   +S+I + +II RD +RFHHFK+G+CSC  YW
Sbjct: 803 ITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850



 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 168/554 (30%), Positives = 263/554 (47%), Gaps = 71/554 (12%)

Query: 19  PSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTG---LHNTQFALSKLIEICAVS 75
           P   PP+           + KC  +  +K +H +++  G   L+ T   +S  I +    
Sbjct: 28  PEITPPF-----------IHKCKTISQVKLIHQKLLSFGILTLNLTSHLISTYISV---- 72

Query: 76  PFGDLSYALLVFETIREPNQVI--WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTF 133
             G LS+A+ +       +  +  WN++IR +  +      +  +  M    + P+ YTF
Sbjct: 73  --GCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTF 130

Query: 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL 193
           PF+ K+C +IS++  G+  HA  L  G  S+ FV  +L+ MY++   L  AR VF++ S+
Sbjct: 131 PFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSV 190

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
            D VS+ ++I  YA  G    A ++F  M   E    P+  T+V VL  CA +G+  LG 
Sbjct: 191 WDVVSWNSIIESYAKLGKPKVALEMFSRM-TNEFGCRPDNITLVNVLPPCASLGTHSLGK 249

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTS 313
            +        +  N+ V N L+DMY+KCG + +A  +F ++  +DV+SWN M+ GY+   
Sbjct: 250 QLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIG 309

Query: 314 DYKEALMLF-----------------------------------RQMLQSNIEPNDVTFL 338
            +++A+ LF                                   RQML S I+PN+VT +
Sbjct: 310 RFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLI 369

Query: 339 SVLPACAYLGALDLGKWIHAY-------IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           SVL  CA +GAL  GK IH Y       + KN     N+ +   LIDMYAKC  +  A  
Sbjct: 370 SVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVI-NQLIDMYAKCKKVDTARA 428

Query: 392 VFDGMGYKT--LASWNAMISGLAMHGKADKALSLFSRMIGEGLQ--PDDITFVGVLSACN 447
           +FD +  K   + +W  MI G + HG A+KAL L S M  E  Q  P+  T    L AC 
Sbjct: 429 MFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACA 488

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
               L IG+Q     +++ + +  L    C++D+  + G   +A  +   M M  +   W
Sbjct: 489 SLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNM-MAKNEVTW 547

Query: 508 TSLLGACRVHGRLE 521
           TSL+    +HG  E
Sbjct: 548 TSLMTGYGMHGYGE 561


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 264/707 (37%), Positives = 425/707 (60%), Gaps = 12/707 (1%)

Query: 3   LPPSSLTLSPSILHFPPSSDPPYKLLQ-NQPSLALLSKCTNMQNIKQVHSQIIKTGLHNT 61
           +PP +      +     SS+P  +L    QP  ++L K  +++ ++Q+H+QII +GL + 
Sbjct: 1   MPPVNFNFYRHL-----SSNPTQRLSPLAQPHASILRKLKDLKPLQQIHAQIITSGLTHN 55

Query: 62  QFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRM 121
            F  + L+   A    G L+ A  +F      N V W  +I G + +   V AI  +  M
Sbjct: 56  TFLSNSLMN--AYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREM 113

Query: 122 ILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGEL 181
           I+  F PN  T   +L + A +  I   K +H   ++ G E + FV T+L++MY++ G +
Sbjct: 114 IMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCM 173

Query: 182 ESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLS 241
             AR +F   S R+ V++ A+++GY+  G+ ++A  LF+ M  R +  + +  T+++++ 
Sbjct: 174 GVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLM--RRKGLLVDFYTIMSLIP 231

Query: 242 ACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVIS 301
           A   +G L++G  +   I   G  ++ H+  AL+D+Y     +  A  +F  +  +DV +
Sbjct: 232 ASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAA 291

Query: 302 WNVMIGGYTHTSDYKEALMLFRQMLQ-SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           W +M+ G++    +  A+  F +ML   N++ + +  + +L +C++ GAL  G+ +HA  
Sbjct: 292 WTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALA 351

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
            K     NN+ + +++IDMYA CGN++ A++ F GMG K +  WNAMI+G  M+G    A
Sbjct: 352 IKTCFA-NNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDA 410

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
           + LF +M G GL PD+ TFV VL AC+HAG++  G Q F  M++   + P LQHY C++D
Sbjct: 411 IDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVID 470

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540
           +LGRAG  D A + +  M  +PD  ++++LLGACR+HG ++LG  +++ + E+EP + G 
Sbjct: 471 ILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGY 530

Query: 541 YVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHI 600
           YVLLSNMYA AG W+ V   R  L  K MKK PG SSIE+   ++ F+ G+K HPQ   I
Sbjct: 531 YVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQEIYTFMAGEKDHPQYFKI 590

Query: 601 YEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRI 660
             +L  +   ++K+G+VP+T+ +L D+ ++ K+  L HHSEK+AIA+GL+ TKP T IRI
Sbjct: 591 EGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPETIIRI 650

Query: 661 VKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            KNLR C +CH+A+K +SK+F R ++ +D NRFH F+DG CSC DYW
Sbjct: 651 TKNLRTCDDCHTASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 276/696 (39%), Positives = 414/696 (59%), Gaps = 23/696 (3%)

Query: 10  LSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLI 69
           L P    FPP                +L  C ++ + K+VH  + K G  +  F  + L+
Sbjct: 120 LRPDFYTFPP----------------ILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLV 163

Query: 70  EICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPN 129
            +   S +G L  A  VF  +   +   WN +I G   + +   A+    RM   G   +
Sbjct: 164 HL--YSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMD 221

Query: 130 TYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN 189
           T T   IL  CA+   +  G  IH HVLK GL+SD FV  +LINMY++ G L+ A++VF+
Sbjct: 222 TITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFD 281

Query: 190 KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL 249
           +  +RD VS+ ++I  Y        A + F  M +      P+  TVV++ S  + +   
Sbjct: 282 QMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQL--GGIRPDLLTVVSLTSIFSQLSDQ 339

Query: 250 ELGNWVCS-LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGG 308
            +   +   +I    L  ++ + NAL++MY+K G +  A  +F+ + ++D ISWN ++ G
Sbjct: 340 RISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTG 399

Query: 309 YTHTSDYKEALMLFRQMLQ-SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
           YT      EA+  +  M +  +  PN  T++S++PA +++GAL  G  IHA + KN   L
Sbjct: 400 YTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYL 459

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
           + V + T LID+Y KCG ++ A  +F  +   T   WNA+I+ L +HG+ ++AL LF  M
Sbjct: 460 D-VFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDM 518

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
           + E ++ D ITFV +LSAC+H+GL+D G++ F+ M ++Y I P L+HYGCMVDLLGRAG 
Sbjct: 519 LAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGY 578

Query: 488 FDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547
            ++A  L++ M ++PDA+IW +LL AC+++G  ELG   +  LLE++ EN G YVLLSN+
Sbjct: 579 LEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNI 638

Query: 548 YAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEI 607
           YA   +W+ V  +R+   D+G++K PG SS+ VGS    F  G++ HP+   IY+ L  +
Sbjct: 639 YANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVL 698

Query: 608 DALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVC 667
            A ++  G+VPD S V  D++E+ KE  L+ HSE+LAIA+G+IST P + IRI KNLRVC
Sbjct: 699 SAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVC 758

Query: 668 GNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSC 703
           G+CH+ATK IS+I  REI+ RD NRFHHFKDG CSC
Sbjct: 759 GDCHNATKYISRISEREIVVRDSNRFHHFKDGICSC 794



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 145/503 (28%), Positives = 257/503 (51%), Gaps = 16/503 (3%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           AL + C N+   K++H+ ++  G        +KLI +      GD+S +   F+ I + N
Sbjct: 27  ALFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTH--GDISLSRSTFDYIHKKN 84

Query: 95  QVIWNNIIRGH---SLSSSPVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGK 150
              WN+II  +         +  +     M   G + P+ YTFP ILK+C    ++ +GK
Sbjct: 85  IFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV---SLVDGK 141

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           ++H  V K+G E D FV  SL+++Y++ G L+ A  VF    ++D  S+ A+I+G+   G
Sbjct: 142 KVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNG 201

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
               A  + + M  + E    +  TV ++L  CA    +  G  +   +  HGL S++ V
Sbjct: 202 NAAGALGVLNRM--KGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFV 259

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
           +NALI+MYSK G L  A+ +F+ +E RD++SWN +I  Y   +D   AL  F+ M    I
Sbjct: 260 SNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGI 319

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
            P+ +T +S+    + L    + + I  ++ +      +V +  +L++MYAK G +  A 
Sbjct: 320 RPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAH 379

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG-EGLQPDDITFVGVLSACNHA 449
            VFD +  K   SWN +++G   +G A +A+  ++ M       P+  T+V ++ A +H 
Sbjct: 380 TVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHV 439

Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI-WT 508
           G L  G +    +I++  +   +    C++DL G+ G  ++A +L    E+  D ++ W 
Sbjct: 440 GALQQGMKIHAKLIKN-SLYLDVFVATCLIDLYGKCGRLEDAMSLF--YEIPRDTSVPWN 496

Query: 509 SLLGACRVHGRLELGESVAKHLL 531
           +++ +  +HGR E    + K +L
Sbjct: 497 AIIASLGIHGRGEEALQLFKDML 519



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 180/381 (47%), Gaps = 10/381 (2%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           F  +  SC  ++A    K++HA +L  G   +  + T LIN+Y  +G++  +R  F+   
Sbjct: 25  FNALFNSCVNVNAT---KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIH 81

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEM--PIREENFVPNESTVVTVLSACAHMGSLE 250
            ++  S+ ++I+ Y   G   +A    +++       +  P+  T   +L AC    SL 
Sbjct: 82  KKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV---SLV 138

Query: 251 LGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYT 310
            G  V   +   G   ++ V  +L+ +YS+ G L  A  +F  +  +DV SWN MI G+ 
Sbjct: 139 DGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFC 198

Query: 311 HTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNV 370
              +   AL +  +M    ++ + +T  S+LP CA    +  G  IH ++ K H   ++V
Sbjct: 199 QNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLK-HGLDSDV 257

Query: 371 SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE 430
            +  +LI+MY+K G ++ A+ VFD M  + L SWN++I+    +     AL  F  M   
Sbjct: 258 FVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLG 317

Query: 431 GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
           G++PD +T V + S  +      I R     +I+   +   +     +V++  + G  + 
Sbjct: 318 GIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNC 377

Query: 491 AEALLKTMEMKPDAAIWTSLL 511
           A  +   +  K D   W +L+
Sbjct: 378 AHTVFDQLPRK-DTISWNTLV 397


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 272/677 (40%), Positives = 411/677 (60%), Gaps = 10/677 (1%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGL-HNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           LL          Q+H+  ++ GL     FA   L+   A   FG +  A   F+ +R  +
Sbjct: 77  LLRAAQGPGTAAQLHACALRLGLLRGDAFASGALVH--AYLRFGRVRDAYRAFDEMRHRD 134

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
              WN ++ G   ++    A+  + RM++ G   +  T   +L  C  +   +    +H 
Sbjct: 135 VPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHL 194

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
           + +K GL+ + FV  ++I++Y + G LE  R VF+  S RD V++ ++I+G+   G +  
Sbjct: 195 YAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVAS 254

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV-CSLIEGHGLGSNLHVTNA 273
           A ++F  M  R+    P+  T++++ SA A  G +  G  V C ++       ++   NA
Sbjct: 255 AVEMFCGM--RDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNA 312

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ-SNIEP 332
           ++DMY+K   +  A+ +F+S+  RD +SWN +I GY       EA+ ++  M +   ++P
Sbjct: 313 IVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKP 372

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
              TF+SVLPA ++LGAL  G  +HA   K    L+ V + T +ID+YAKCG +  A  +
Sbjct: 373 IQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLD-VYVGTCVIDLYAKCGKLDEAMLL 431

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F+    ++   WNA+ISG+ +HG   KALSLFS+M  EG+ PD +TFV +L+AC+HAGL+
Sbjct: 432 FEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLV 491

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           D GR +FN M   Y I P  +HY CMVD+ GRAG  D+A   ++ M +KPD+AIW +LLG
Sbjct: 492 DQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLG 551

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           ACR+HG +E+G+  +++L EL+P+N G YVL+SNMYA  G+WD V  +R+ +  + ++K 
Sbjct: 552 ACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKT 611

Query: 573 PGCSSIEVGSVVHEFLVGDK--VHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           PG SSIEV   V+ F  G++  +HPQ + I   L ++ A +   G+VPD S VL D++E+
Sbjct: 612 PGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIRSLGYVPDYSFVLQDVEED 671

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KE  L++HSE+LAIA+G+I+T P T + I KNLRVCG+CH+ATK ISKI  REII RD 
Sbjct: 672 EKEQILNNHSERLAIAFGIINTPPRTPLHIYKNLRVCGDCHNATKYISKITEREIIVRDS 731

Query: 691 NRFHHFKDGNCSCNDYW 707
           NRFHHFKDG CSC D+W
Sbjct: 732 NRFHHFKDGYCSCGDFW 748


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 286/704 (40%), Positives = 419/704 (59%), Gaps = 28/704 (3%)

Query: 10  LSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGL-HNTQFALSKL 68
           L P    FPP       L++  P  A         +  Q+H+  ++ GL H   FA   L
Sbjct: 65  LRPDSFTFPP-------LVRAAPGPA---------SAAQLHACALRLGLLHPNVFASGSL 108

Query: 69  IEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVP 128
           +   A   FG ++ A  VF+ + E +   WN ++ G   ++    A+    RM+  G   
Sbjct: 109 VH--AYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAG 166

Query: 129 NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF 188
           +  T   +L  C  +   +    +H + +K GL  + FV  +LI++Y + G L  A  VF
Sbjct: 167 DAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVF 226

Query: 189 NKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS 248
              +LRD V++ ++I+     G +  A +LF  M   E    P+  T+V++ SA A  G 
Sbjct: 227 GGMALRDLVTWNSIISANEQGGKVAAAVELFHGM--MESGVCPDVLTLVSLASAVAQCGD 284

Query: 249 LELG-NWVCSLIEGHGLG-SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMI 306
            ELG   V   +   G    ++   NA++DMY+K   +  A+ +F+++  RDV+SWN +I
Sbjct: 285 -ELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLI 343

Query: 307 GGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365
            GY       EA+ ++  M     ++P   TF+SVLPA +YLG L  G  +HA   K   
Sbjct: 344 TGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGL 403

Query: 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
            L+ V + T LID+YAKCG +  A  +F+ M  ++   WNA+I+GL +HG   KALSLFS
Sbjct: 404 NLD-VYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFS 462

Query: 426 RMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485
           +M  E ++PD +TFV +L+AC+HAGL+D GR +F+ M   Y I P  +HY CMVD+LGRA
Sbjct: 463 QMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRA 522

Query: 486 GLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545
           G  DEA   +++M +KPD+A+W +LLGACR+HG +E+G+  +++L EL+PEN G YVL+S
Sbjct: 523 GQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMS 582

Query: 546 NMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKV--HPQSKHIYEM 603
           NMYA  G+WD V  +R+ +  + ++K PG SS+EV   V  F  G +   HPQ + I   
Sbjct: 583 NMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYSGTQTEPHPQHEEIQRG 642

Query: 604 LDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKN 663
           L ++ A ++ +G+VPD S VL D++E+ KE  L++HSE+LAIA+G+I+T PGT + I KN
Sbjct: 643 LHDLLAKMKSAGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPGTPLHIYKN 702

Query: 664 LRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           LRVCG+CHSATK ISKI  REII RD NRFHHFKDG+CSC D+W
Sbjct: 703 LRVCGDCHSATKYISKITEREIIVRDANRFHHFKDGHCSCGDFW 746


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 280/705 (39%), Positives = 406/705 (57%), Gaps = 82/705 (11%)

Query: 3   LPPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQ 62
           L  S  +++ +   FP  S   Y    + P L  LS C ++  + Q+H+QII +G  +  
Sbjct: 27  LRRSFTSIATAASEFPSLSSSTYTNYLHYPRL--LSSCKHLNPLLQIHAQIIVSGFKH-H 83

Query: 63  FALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI 122
            +++ LI +   S F     A  VF++   P++++WN++IR ++ S     A++ Y  M+
Sbjct: 84  HSITHLINL--YSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMV 141

Query: 123 LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELE 182
             G                                  GLE D F+   L++MY++ G+L+
Sbjct: 142 EKG----------------------------------GLERDVFIGAGLVDMYSKMGDLK 167

Query: 183 SARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSA 242
            AR VF+K   RD V++ A+I G +       AR++FD+M  +++               
Sbjct: 168 RAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDD--------------- 212

Query: 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
               G++  G                         Y+  G  V+  +LF+ ++  +V +W
Sbjct: 213 -VSWGTMMAG-------------------------YAHNGCFVEVLELFDKMKLGNV-TW 245

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
           NV+I  Y      KEA+  F QM   N  PN VTF+SVLPA AYL A   G   HA I +
Sbjct: 246 NVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQ 305

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALS 422
               L+N  +  SLIDMYAKCG +  +E++F+ M +K   SWNAM+SG A+HG  D+A++
Sbjct: 306 M-GFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIA 364

Query: 423 LFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482
           LFS M    +Q D ++FV VLSAC HAGL++ GR+ F++M   Y I P L+HY CMVDLL
Sbjct: 365 LFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLL 424

Query: 483 GRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV 542
           GRAGLFDE    +K M ++PDA +W +LLG+CR+H  ++LGE    HL++LEP NP  +V
Sbjct: 425 GRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFV 484

Query: 543 LLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYE 602
           +LS++YA +GRW D    R+++ND G+KK PGCS +E+ + VH F VGDK HPQ + ++ 
Sbjct: 485 VLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHL 544

Query: 603 MLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVK 662
           + + +   +EK G+VPD S VL +++EE KE  L  HSE+LAI + L++T PG+TI+IVK
Sbjct: 545 LWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVK 604

Query: 663 NLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           NLRVC +CH+ TK ISKI  R II RD  RFHHF+DG CSCNDYW
Sbjct: 605 NLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 649


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 270/663 (40%), Positives = 403/663 (60%), Gaps = 13/663 (1%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           VH  ++K G  +  F  + LI+  +VS  G +S A  VF+ I   + V W  +I  ++ +
Sbjct: 68  VHGCVLKVGYGSNTFIGTALIDAYSVS--GCVSMAREVFDEISSKDMVSWTGMIASYAEN 125

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVH 168
                A++F+ +M ++GF PN +TF  +LK+C  +     GK +H  VLK   E D +V 
Sbjct: 126 DCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVG 185

Query: 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
             L+ +Y + G+ + A   F      D + ++ +I+ +A  G  + A ++F +M  R   
Sbjct: 186 VGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQM--RRAF 243

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH----GLGSNLHVTNALIDMYSKCGDL 284
            +PN+ T  +VL A A + SL+L       I GH    GL +++ V+NAL+  Y+KCG +
Sbjct: 244 VIPNQFTFSSVLQASADIESLDLSK----TIHGHALKAGLSTDVFVSNALMACYAKCGCI 299

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
            ++ +LFE++  R+ +SWN +I  Y    D + AL LF  ML+  ++  +VT+ S+L AC
Sbjct: 300 EQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRAC 359

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
           A L AL+LG  +H    K      +V++  +LIDMYAKCG+IK A  +FD +  +   SW
Sbjct: 360 ATLAALELGLQVHCLTAKTIYG-QDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSW 418

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
           NA+I G +MHG   +A+ +F+ M     +PD++TFVGVLSAC++ G LD G+QYF +M Q
Sbjct: 419 NAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQ 478

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGE 524
           DY I P ++HY CMV L+GR+G  D+A   ++ +  +P   IW +LLGAC +H  +ELG 
Sbjct: 479 DYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGR 538

Query: 525 SVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVV 584
             A+ +LELEP +  ++VLLSN+YA A RW +VA +R  +  KG+KK PG S IE    V
Sbjct: 539 ISAQRVLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNV 598

Query: 585 HEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLA 644
           H F V D  H   K I  ML+ ++    K+G+ P  + VL D++++ KE  L  HSE+LA
Sbjct: 599 HCFTVADTSHADLKLINGMLEFLNMKTRKAGYSPQLNAVLLDVEDDEKERLLWLHSERLA 658

Query: 645 IAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCN 704
           +A+GL+    G  IRI+KNLR+C +CHS  KLISKI  R+II RD NRFHHF++G+CSC 
Sbjct: 659 LAFGLVRMPAGCPIRIIKNLRICVDCHSVIKLISKIVGRDIIVRDMNRFHHFENGSCSCA 718

Query: 705 DYW 707
           DYW
Sbjct: 719 DYW 721



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 145/474 (30%), Positives = 237/474 (50%), Gaps = 38/474 (8%)

Query: 85  LVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS 144
           +VF+ + E N V +  +I G++ S+  + A + + R+   G   N + F  +LK    + 
Sbjct: 1   MVFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSME 60

Query: 145 AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
               G+ +H  VLK+G  S+ F+ T+LI+ Y+ +G +  AR VF++ S +D VS+T +I 
Sbjct: 61  WAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIA 120

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV-CSLIEGHG 263
            YA      +A + F +M  R   F PN  T   VL AC  + + + G  V CS+++ + 
Sbjct: 121 SYAENDCFSEALEFFSQM--RVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTN- 177

Query: 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFR 323
              +L+V   L+++Y++CGD   A   F  + K DVI W+ MI  +  +   ++AL +F 
Sbjct: 178 YERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFC 237

Query: 324 QMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383
           QM ++ + PN  TF SVL A A + +LDL K IH +  K      +V +  +L+  YAKC
Sbjct: 238 QMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLS-TDVFVSNALMACYAKC 296

Query: 384 GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
           G I+ + ++F+ +  +   SWN +I      G  ++ALSLFS M+   +Q  ++T+  +L
Sbjct: 297 GCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSIL 356

Query: 444 SACNHAGLLDIGRQYF---------------NAMIQDYKISPKLQHYGCMVDLL------ 482
            AC     L++G Q                 NA+I  Y     ++    M D+L      
Sbjct: 357 RACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKV 416

Query: 483 ---------GRAGLFDEAEA---LLKTMEMKPDAAIWTSLLGACRVHGRLELGE 524
                       GL  EA     L+K  + KPD   +  +L AC   GRL+ G+
Sbjct: 417 SWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGK 470


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 255/599 (42%), Positives = 391/599 (65%), Gaps = 12/599 (2%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           LAL+  CTN+Q +KQ+H++ I + L  TQF ++K+I   +      L YA  VF   +EP
Sbjct: 10  LALIETCTNIQQLKQIHAKSIISSLSYTQFIITKIIN--SFLSHACLDYATQVFNQTQEP 67

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRM-ILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
           +  I+N +IR +S S +P VAI  Y +M      + + YT+PF+ K+CA   A+ +GK++
Sbjct: 68  DGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEV 127

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H  ++++G E D F+ +SL+N Y   GE+ +A+ VF++   +D V + ALITGYA +G +
Sbjct: 128 HGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMV 187

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS-LIEGHGLGSNLHVT 271
            D+  +F EM +  +   PNE T++ ++ AC    +L+LG  +   +++   L   + + 
Sbjct: 188 LDSFGVFKEM-VEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLE 246

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
            ALI++Y KCG L  AR LF+ I +++ + WN +I GY       E + L R+M  SN++
Sbjct: 247 AALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLK 306

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+  T   VL ACA +GA +LG W+H + +K  + + +V + T+LIDMYAKCG I AA +
Sbjct: 307 PDRFTVSGVLSACAQMGAFNLGNWVHRFAEK--KGIWDVFIGTALIDMYAKCGFIGAARK 364

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VFD M  + +A+WNA++SG A HG+A+ A+ LFS M   G +PD ITF+ VL AC H+GL
Sbjct: 365 VFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGL 424

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           ++ G+QYF+ M+Q YKI P+++HYGCMVDLLGRAGL  EA  L+K M ++P+  +W +LL
Sbjct: 425 VENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALL 484

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
            AC +HG +E+GE  A H+++L   + G+YV+L+N+YA A R++ V  +R  + +KG+ K
Sbjct: 485 SACSIHGNIEIGEWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMMVEKGICK 544

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
             GCS IE+G VVHEF+V DK+HP+S+ IY +LDE+   L+ +G+VP     L  +DEE
Sbjct: 545 SHGCSMIEIGDVVHEFVVADKMHPRSEEIYSVLDELSKKLKMAGYVP-----LLALDEE 598


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 257/573 (44%), Positives = 367/573 (64%), Gaps = 3/573 (0%)

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
           F + +  K   I + KQ+HA V   G+  D  V   L+ M A++ +L +A L+FNK   R
Sbjct: 5   FFISTLFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEER 64

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
           D VS++ +I G+   G  +   Q F E+ IR  +  P+  ++  V+ AC     L +G  
Sbjct: 65  DPVSWSVMIGGFVKNGDYERCFQTFREL-IRAGS-KPDNFSLPFVIKACRDTMGLIMGRL 122

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           + S +  +GL  +  V + L+DMY+KCG +  A+ LF+ + K+D+++  VMI GY     
Sbjct: 123 IHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGK 182

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
             E+ +LF QM +    P+ V  ++++ ACA LGA++  + +H Y+      L+ V L T
Sbjct: 183 PNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLD-VELGT 241

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
           ++IDMYAKCG+I ++ ++FD M  K + SW+AMI     HG+  +AL LF  M+  G+ P
Sbjct: 242 AMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIP 301

Query: 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494
           + ITF+ +L AC+HAGL+D G Q F+ M   Y + P ++HY CMVDLLGRAG  D+A  L
Sbjct: 302 NRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRL 361

Query: 495 LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554
           ++ ME++ D  IW + LGACR+H +++L E  AK LL L+ +NPG Y+LLSN+YA AGRW
Sbjct: 362 IENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRW 421

Query: 555 DDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKS 614
            DVA IR  +  + +KK+PG + IEV ++++ F  GD  H +S  IYEML  +   LE +
Sbjct: 422 KDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLESA 481

Query: 615 GFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSAT 674
           G+VPDT+ VL+D+DEE K G L  HSEKLAIA+GLI+T  GT IRI KNLRVCG+CHS  
Sbjct: 482 GYVPDTNSVLHDVDEEVKLGILHAHSEKLAIAFGLIATPDGTPIRITKNLRVCGDCHSFC 541

Query: 675 KLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           KL+S I  R+II RD NRFHHFK+G CSC DYW
Sbjct: 542 KLVSAITQRDIIVRDANRFHHFKEGICSCGDYW 574



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 125/388 (32%), Positives = 225/388 (57%), Gaps = 5/388 (1%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           ++ L KC N+  IKQVH+Q+  TG+ +     +KL+ +CA     DL  A L+F  + E 
Sbjct: 7   ISTLFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCA--KHKDLVTAHLLFNKMEER 64

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           + V W+ +I G   +       + +  +I +G  P+ ++ PF++K+C     +  G+ IH
Sbjct: 65  DPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIH 124

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
           + VLK GL  D FV ++L++MYA+ G +++A+ +F++   +D V+ T +I GYA  G  +
Sbjct: 125 STVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPN 184

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           ++  LFD+M  R + FVP++  +VT+++ACA +G++     V   +       ++ +  A
Sbjct: 185 ESWVLFDQM--RRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTA 242

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           +IDMY+KCG +  +R++F+ +E+++VISW+ MIG Y +    +EAL LF  ML S I PN
Sbjct: 243 MIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPN 302

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
            +TF+S+L AC++ G +D G  + + +  ++    +V  +T ++D+  + G +  A ++ 
Sbjct: 303 RITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLI 362

Query: 394 DGMGY-KTLASWNAMISGLAMHGKADKA 420
           + M   K    W A +    +H + D A
Sbjct: 363 ENMEVEKDEGIWCAFLGACRIHRQVDLA 390


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 271/678 (39%), Positives = 411/678 (60%), Gaps = 13/678 (1%)

Query: 36  LLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +L  C+ +  I+   ++HS     GL +  F  + L++  A    G L  A  +F ++  
Sbjct: 115 VLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYA--KCGILVEAQRLFSSMSH 172

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V WN +I G SL      A++  ++M   G  PN+ T   +L +  +  A+  GK +
Sbjct: 173 RDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKAL 232

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H + ++   ++   V T L++MYA+   L  AR +F+   +R+ VS++A+I GY +   +
Sbjct: 233 HGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCM 292

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV-CSLIEGHGLGSNLHVT 271
            +A +LFD+M I ++   P   T+ +VL ACA +  L  G  + C +I+   LGS L + 
Sbjct: 293 KEALELFDQM-ILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIK---LGSVLDIL 348

Query: 272 --NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
             N L+ MY+KCG +  A   F+ +  +D +S++ ++ G     +   AL +FR M  S 
Sbjct: 349 LGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSG 408

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           I+P+  T L VLPAC++L AL  G   H Y+       + + +  +LIDMY+KCG I  A
Sbjct: 409 IDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTL-ICNALIDMYSKCGKISFA 467

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
            +VF+ M    + SWNAMI G  +HG   +AL LF  ++  GL+PDDITF+ +LS+C+H+
Sbjct: 468 REVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHS 527

Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
           GL+  GR +F+AM +D+ I P+++H  CMVD+LGRAGL DEA   ++ M  +PD  IW++
Sbjct: 528 GLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSA 587

Query: 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
           LL ACR+H  +ELGE V+K +  L PE+ G +VLLSN+Y+ AGRWDD A IR    D G+
Sbjct: 588 LLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGL 647

Query: 570 KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE 629
           KK+PGCS IE+  +VH F+ GD+ H Q   I   L+E+   +++ G+  + S V  D++E
Sbjct: 648 KKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEE 707

Query: 630 EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
           E KE  L +HSEKLAIA+G+++ K G  I + KNLRVCG+CH+A K ++ I  REI  RD
Sbjct: 708 EEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRD 767

Query: 690 RNRFHHFKDGNCSCNDYW 707
            NRFHHFK+G C+C D+W
Sbjct: 768 ANRFHHFKNGTCNCGDFW 785



 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 172/499 (34%), Positives = 259/499 (51%), Gaps = 11/499 (2%)

Query: 24  PYKLLQNQPSLALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDL 80
           P +       L LL  C   +++   K++H   +K   +     L KL  +        +
Sbjct: 2   PLRFEVKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRL--YLSCNQV 59

Query: 81  SYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSC 140
             A  +F+ I  P+ ++WN IIR ++ +     AI  Y  M+  G  PN YT+PF+LK+C
Sbjct: 60  VLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKAC 119

Query: 141 AKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYT 200
           + + AI +G +IH+H    GLESD FV T+L++ YA+ G L  A+ +F+  S RD V++ 
Sbjct: 120 SGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWN 179

Query: 201 ALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE 260
           A+I G +  G  DDA QL   M ++EE   PN ST+V VL       +L  G  +     
Sbjct: 180 AMIAGCSLYGLCDDAVQLI--MQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCV 237

Query: 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALM 320
                + + V   L+DMY+KC  L+ AR +F+ +  R+ +SW+ MIGGY  +   KEAL 
Sbjct: 238 RRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALE 297

Query: 321 LFRQM-LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
           LF QM L+  ++P  VT  SVL ACA L  L  G+ +H YI K    L ++ L  +L+ M
Sbjct: 298 LFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVL-DILLGNTLLSM 356

Query: 380 YAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439
           YAKCG I  A + FD M  K   S++A++SG   +G A  ALS+F  M   G+ PD  T 
Sbjct: 357 YAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTM 416

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME 499
           +GVL AC+H   L  G      +I     +  L     ++D+  + G    A  +   M+
Sbjct: 417 LGVLPACSHLAALQHGFCSHGYLIVRGFATDTLI-CNALIDMYSKCGKISFAREVFNRMD 475

Query: 500 MKPDAAIWTSLLGACRVHG 518
            + D   W +++    +HG
Sbjct: 476 -RHDIVSWNAMIIGYGIHG 493


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 263/666 (39%), Positives = 410/666 (61%), Gaps = 11/666 (1%)

Query: 47   KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
            +Q+H+ +IK+         + L+ +   S  G +  A   F    E + + WN +I  ++
Sbjct: 914  EQIHALVIKSSFAPVVPVSNSLMNM--YSKAGVVYAAEKTFINSPELDLISWNTMISSYA 971

Query: 107  LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCA---KISAISEGKQIHAHVLKLGLES 163
             ++  + AI  +  ++  G  P+ +T   +L++C+   +    + G Q+H + +K G+ +
Sbjct: 972  QNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIIN 1031

Query: 164  DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
            D FV T+LI++Y++ G+++ A  + +     D  S+ A++ GY      + +R+  +   
Sbjct: 1032 DSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKS---NKSRKALEHFS 1088

Query: 224  IREENFVP-NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
            +  E  +P +E T+ T + A   + +L+ G  + +     G  ++L V++ ++DMY KCG
Sbjct: 1089 LMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCG 1148

Query: 283  DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
            D+  A +LF  I + D ++W  MI GY    D   AL ++  M  S ++P++ TF +++ 
Sbjct: 1149 DMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIK 1208

Query: 343  ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
            A + L AL+ GK IHA + K    L++  + TSL+DMY KCG+++ A +VF  M  + + 
Sbjct: 1209 ASSCLTALEQGKQIHANVVKLDYSLDHF-VGTSLVDMYCKCGSVQDAYRVFRKMDVRKVV 1267

Query: 403  SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
             WNAM+ GLA HG  D+AL+LF  M   G+QPD +TF+GVLSAC+H+GL     +YF+AM
Sbjct: 1268 FWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAM 1327

Query: 463  IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
             + Y I+P+++HY C+VD LGRAG   EAE ++ +M  K  A+++ +LLGACR  G  E 
Sbjct: 1328 FKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAET 1387

Query: 523  GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582
             + VA  LL L+P +  AYVLLSN+YA + +WDDV   R  +  K +KK PG S I+V +
Sbjct: 1388 AKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKN 1447

Query: 583  VVHEFLVGDKVHPQSKHIYEMLDEI-DALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
             VH F+V D+ HPQ+  IYE ++++   + E+  +VPDT   L D++EE KE AL +HSE
Sbjct: 1448 KVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSE 1507

Query: 642  KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
            KLAIA+GLIST P  TIR++KNLRVCG+CHSA K ISK+  REI+ RD NRFHHF++G C
Sbjct: 1508 KLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTC 1567

Query: 702  SCNDYW 707
            SC DYW
Sbjct: 1568 SCGDYW 1573



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 135/509 (26%), Positives = 223/509 (43%), Gaps = 46/509 (9%)

Query: 43   MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNII 102
            +Q  + VH   +K G     F    L+ I     +G +  A L+F+ + E + V+WN ++
Sbjct: 733  VQVSETVHGYAVKIGFELDLFVSGALVNI--YCKYGLVGQARLLFDKMPERDAVLWNVML 790

Query: 103  RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLK-LGL 161
            + +  +S    A++F+     SGF P+      ++      S +S  ++ HA  +K   +
Sbjct: 791  KAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIGGVN--SDVSNNRKRHAEQVKAYAM 848

Query: 162  ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDE 221
            +  PF   S  N++A N +L                      T +   G +  A   F  
Sbjct: 849  KMFPFDQGS--NIFAWNKKL----------------------TEFLHAGQIVAAIDCFK- 883

Query: 222  MPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC 281
              +       +  T+V +LSA      L+LG  + +L+        + V+N+L++MYSK 
Sbjct: 884  -TLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKA 942

Query: 282  GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
            G +  A   F +  + D+ISWN MI  Y   +   EA+  FR +L+  ++P+  T  SVL
Sbjct: 943  GVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVL 1002

Query: 342  PACAYLGA---LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
             AC+         LG  +H Y  K    +N+  + T+LID+Y+K G +  AE +  G   
Sbjct: 1003 RACSTGDEGEYFTLGSQVHVYAIKC-GIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYD 1061

Query: 399  KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQY 458
              LASWNA++ G     K+ KAL  FS M   G+  D+IT    + A      L  G+Q 
Sbjct: 1062 FDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQ- 1120

Query: 459  FNAMIQDYKISPKLQH----YGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
                IQ Y I     +       ++D+  + G    A  L   +  +PD   WT+++   
Sbjct: 1121 ----IQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEIS-RPDEVAWTTMISGY 1175

Query: 515  RVHGRLELGESVAKHLLELEPENPGAYVL 543
              +G  +   SV  HL+ +    P  Y  
Sbjct: 1176 IENGDEDHALSV-YHLMRVSGVQPDEYTF 1203



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 133/484 (27%), Positives = 217/484 (44%), Gaps = 62/484 (12%)

Query: 47   KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
            K+ H++I+ +G    ++  + LI +   S  G L  A  VF+   + + V WN+I+  ++
Sbjct: 631  KRAHARIVTSGDLPDRYLTNNLITM--YSKCGSLCSARQVFDKSSDRDLVTWNSILAAYA 688

Query: 107  L---SSSPVVAIKFYVRMILS--GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGL 161
                SS   V   F +  +L   GF     T   +LK C     +   + +H + +K+G 
Sbjct: 689  QFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGF 748

Query: 162  ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDE 221
            E D FV  +L+N+Y + G +  ARL+F+K   RDAV +  ++  Y    + D+A + F  
Sbjct: 749  ELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFS- 807

Query: 222  MPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC 281
                   F P+ S +  V+                        G N  V+N       + 
Sbjct: 808  -AFHRSGFFPDFSNLHCVIG-----------------------GVNSDVSNN----RKRH 839

Query: 282  GDLVK--ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS 339
             + VK  A  +F   +  ++ +WN  +  + H      A+  F+ +L+S I  + VT + 
Sbjct: 840  AEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVI 899

Query: 340  VLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK 399
            +L A      LDLG+ IHA + K+      V +  SL++MY+K G + AAE+ F      
Sbjct: 900  ILSAAVGADDLDLGEQIHALVIKS-SFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPEL 958

Query: 400  TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF 459
             L SWN MIS  A +    +A+  F  ++ +GL+PD  T   VL AC+     D G +YF
Sbjct: 959  DLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEG-EYF 1014

Query: 460  N------------AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
                          +I D  +S  L      +DL  + G  DEAE LL   +   D A W
Sbjct: 1015 TLGSQVHVYAIKCGIINDSFVSTAL------IDLYSKGGKMDEAEFLLHG-KYDFDLASW 1067

Query: 508  TSLL 511
             +++
Sbjct: 1068 NAIM 1071



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 168/384 (43%), Gaps = 41/384 (10%)

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
           +S   ++ +  GK+ HA ++  G   D ++  +LI MY++ G L SAR VF+KSS RD V
Sbjct: 619 RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678

Query: 198 SYTALITGYA-----SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
           ++ +++  YA     S   + +  +LF    +RE  F     T+  +L  C   G +++ 
Sbjct: 679 TWNSILAAYAQFADSSYENVLEGFRLFG--LLREFGFSITRLTLAPLLKLCLLSGFVQVS 736

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
             V       G   +L V+ AL+++Y K G + +AR LF+ + +RD + WNVM+  Y   
Sbjct: 737 ETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVEN 796

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
           S   EAL  F    +S   P+      V+                     N    NN   
Sbjct: 797 SFQDEALRFFSAFHRSGFFPDFSNLHCVIGGV------------------NSDVSNNRKR 838

Query: 373 WTSLIDMYA-KCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
               +  YA K         +F         +WN  ++     G+   A+  F  ++   
Sbjct: 839 HAEQVKAYAMKMFPFDQGSNIF---------AWNKKLTEFLHAGQIVAAIDCFKTLLRST 889

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
           +  D +T V +LSA   A  LD+G Q  +A++     +P +     ++++  +AG+   A
Sbjct: 890 IGHDSVTLVIILSAAVGADDLDLGEQ-IHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAA 948

Query: 492 EALLKTMEMKP--DAAIWTSLLGA 513
           E   KT    P  D   W +++ +
Sbjct: 949 E---KTFINSPELDLISWNTMISS 969



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 93/208 (44%), Gaps = 11/208 (5%)

Query: 38   SKC-TNMQNIKQVHSQIIKTGLHNTQFALSKLIEI-CAVSPFGDLSYALLVFETIREPNQ 95
            S C T ++  KQ+H+ ++K       F  + L+++ C     G +  A  VF  +     
Sbjct: 1210 SSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKC---GSVQDAYRVFRKMDVRKV 1266

Query: 96   VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG-KQIHA 154
            V WN ++ G +       A+  +  M  +G  P+  TF  +L +C+     SE  K   A
Sbjct: 1267 VFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDA 1326

Query: 155  HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVS-YTALITGYASRGYLD 213
                 G+  +   ++ L++   + G ++ A  V      + + S Y AL+    ++G  +
Sbjct: 1327 MFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAE 1386

Query: 214  DARQLFDEMPIREENFVPNESTVVTVLS 241
             A+++ D++   +    P++S+   +LS
Sbjct: 1387 TAKRVADKLLALD----PSDSSAYVLLS 1410


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 264/571 (46%), Positives = 367/571 (64%), Gaps = 9/571 (1%)

Query: 142 KISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN---GELESARLVFNKSSLRDAVS 198
           K +++ E KQ+ A  +K  L SD  V T  IN  + N     ++ A  +F++    D V 
Sbjct: 29  KCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQPDIVL 88

Query: 199 YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           +  +  GYA       A  LF +  I      P++ T  ++L ACA   +LE G  +  L
Sbjct: 89  FNTMARGYARTDTPLRAFTLFTQ--ILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCL 146

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
               GL  N++V   LI+MY+ C ++  AR +F+ I +  V+++N MI GY   S   EA
Sbjct: 147 AIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEA 206

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNN-VSLWTSLI 377
           L LFR++   N++P DVT LSVL +CA LGALDLGKW+H Y+ KN    N  V + T+LI
Sbjct: 207 LSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKN--GFNRFVKVDTALI 264

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI 437
           DMYAKCG++  A  VF+ M  +   +W+AMI   A+HG   KA+SLF  M   G +PD+I
Sbjct: 265 DMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEI 324

Query: 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT 497
           TF+G+L AC+H GL++ G +YF  M   Y + P ++HYGCMVDLLGRAG  +EA   +  
Sbjct: 325 TFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVG 384

Query: 498 MEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557
           + ++P   +W +LL AC  HG +ELG+ V + + EL+  + G Y++LSN+ A AGRW+DV
Sbjct: 385 LPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNLCARAGRWEDV 444

Query: 558 ATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFV 617
             +R  +N++G+ K+PGCSS+EV +VVHEF  GD VH  S  +++ LDE+   L+  G+V
Sbjct: 445 NYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVHSVSTKLHQALDELVKELKLVGYV 504

Query: 618 PDTSEVLY-DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKL 676
           P+TS V + DM++E KE  L +HSEKLAI +GL++T PGTTIR+VKNLRVCG+CHSA KL
Sbjct: 505 PNTSLVFHADMEDEEKEVTLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKL 564

Query: 677 ISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           IS IF+R+II RD  RFHHFKDG CSC DYW
Sbjct: 565 ISLIFDRQIILRDVQRFHHFKDGKCSCEDYW 595



 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 141/424 (33%), Positives = 245/424 (57%), Gaps = 12/424 (2%)

Query: 18  PPSSD--PPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVS 75
           PP +   PP         L+LL KCT+++ +KQ+ +  IKT LH+    L+K I  C+++
Sbjct: 6   PPVTPMCPPNSNSNTTHPLSLLPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCSLN 65

Query: 76  PFG-DLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFP 134
           P    + +A  +F+ I +P+ V++N + RG++ + +P+ A   + +++ SG  P+ YTFP
Sbjct: 66  PTTTSMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFP 125

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
            +LK+CA   A+ EG+Q+H   +KLGL  + +V  +LINMY    E++ AR VF+K    
Sbjct: 126 SLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEP 185

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
             V+Y A+ITGYA     ++A  LF E+  R  N  P + T+++VLS+CA +G+L+LG W
Sbjct: 186 CVVTYNAMITGYARGSRPNEALSLFRELQAR--NLKPTDVTMLSVLSSCALLGALDLGKW 243

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           +   ++ +G    + V  ALIDMY+KCG L  A  +FE++  RD  +W+ MI  Y     
Sbjct: 244 MHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGH 303

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG-KWIHAYIDKNHQKLNNVSLW 373
             +A+ LF++M ++  EP+++TFL +L AC++ G ++ G ++ +   DK +  +  +  +
Sbjct: 304 GLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDK-YGVIPGIKHY 362

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
             ++D+  + G ++ A +   G+  + T   W  ++S    HG  +    L  R+I +  
Sbjct: 363 GCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVE----LGKRVIEQIF 418

Query: 433 QPDD 436
           + DD
Sbjct: 419 ELDD 422


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 263/666 (39%), Positives = 410/666 (61%), Gaps = 11/666 (1%)

Query: 47   KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
            +Q+H+ +IK+         + L+ +   S  G +  A   F    E + + WN +I  ++
Sbjct: 914  EQIHALVIKSSFAPVVPVSNSLMNM--YSKAGVVYAAEKTFINSPELDLISWNTMISSYA 971

Query: 107  LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCA---KISAISEGKQIHAHVLKLGLES 163
             ++  + AI  +  ++  G  P+ +T   +L++C+   +    + G Q+H + +K G+ +
Sbjct: 972  QNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIIN 1031

Query: 164  DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
            D FV T+LI++Y++ G+++ A  + +     D  S+ A++ GY      + +R+  +   
Sbjct: 1032 DSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKS---NKSRKALEHFS 1088

Query: 224  IREENFVP-NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
            +  E  +P +E T+ T + A   + +L+ G  + +     G  ++L V++ ++DMY KCG
Sbjct: 1089 LMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCG 1148

Query: 283  DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
            D+  A +LF  I + D ++W  MI GY    D   AL ++  M  S ++P++ TF +++ 
Sbjct: 1149 DMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIK 1208

Query: 343  ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
            A + L AL+ GK IHA + K    L++  + TSL+DMY KCG+++ A +VF  M  + + 
Sbjct: 1209 ASSCLTALEQGKQIHANVVKLDYSLDHF-VGTSLVDMYCKCGSVQDAYRVFRKMDVRKVV 1267

Query: 403  SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
             WNAM+ GLA HG  D+AL+LF  M   G+QPD +TF+GVLSAC+H+GL     +YF+AM
Sbjct: 1268 FWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAM 1327

Query: 463  IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
             + Y I+P+++HY C+VD LGRAG   EAE ++ +M  K  A+++ +LLGACR  G  E 
Sbjct: 1328 FKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAET 1387

Query: 523  GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582
             + VA  LL L+P +  AYVLLSN+YA + +WDDV   R  +  K +KK PG S I+V +
Sbjct: 1388 AKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKN 1447

Query: 583  VVHEFLVGDKVHPQSKHIYEMLDEI-DALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
             VH F+V D+ HPQ+  IYE ++++   + E+  +VPDT   L D++EE KE AL +HSE
Sbjct: 1448 KVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSE 1507

Query: 642  KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
            KLAIA+GLIST P  TIR++KNLRVCG+CHSA K ISK+  REI+ RD NRFHHF++G C
Sbjct: 1508 KLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTC 1567

Query: 702  SCNDYW 707
            SC DYW
Sbjct: 1568 SCGDYW 1573



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 135/509 (26%), Positives = 223/509 (43%), Gaps = 46/509 (9%)

Query: 43   MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNII 102
            +Q  + VH   +K G     F    L+ I     +G +  A L+F+ + E + V+WN ++
Sbjct: 733  VQVSETVHGYAVKIGFELDLFVSGALVNI--YCKYGLVGQARLLFDKMPERDAVLWNVML 790

Query: 103  RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLK-LGL 161
            + +  +S    A++F+     SGF P+      ++      S +S  ++ HA  +K   +
Sbjct: 791  KAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGGVN--SDVSNNRKRHAEQVKAYAM 848

Query: 162  ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDE 221
            +  PF   S  N++A N +L                      T +   G +  A   F  
Sbjct: 849  KMFPFDQGS--NIFAWNKKL----------------------TEFLHAGQIVAAIDCFK- 883

Query: 222  MPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC 281
              +       +  T+V +LSA      L+LG  + +L+        + V+N+L++MYSK 
Sbjct: 884  -TLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKA 942

Query: 282  GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
            G +  A   F +  + D+ISWN MI  Y   +   EA+  FR +L+  ++P+  T  SVL
Sbjct: 943  GVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVL 1002

Query: 342  PACAYLGA---LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
             AC+         LG  +H Y  K    +N+  + T+LID+Y+K G +  AE +  G   
Sbjct: 1003 RACSTGDEGEYFTLGSQVHVYAIKC-GIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYD 1061

Query: 399  KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQY 458
              LASWNA++ G     K+ KAL  FS M   G+  D+IT    + A      L  G+Q 
Sbjct: 1062 FDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQ- 1120

Query: 459  FNAMIQDYKISPKLQH----YGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
                IQ Y I     +       ++D+  + G    A  L   +  +PD   WT+++   
Sbjct: 1121 ----IQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEIS-RPDEVAWTTMISGY 1175

Query: 515  RVHGRLELGESVAKHLLELEPENPGAYVL 543
              +G  +   SV  HL+ +    P  Y  
Sbjct: 1176 IENGDEDHALSV-YHLMRVSGVQPDEYTF 1203



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 133/484 (27%), Positives = 217/484 (44%), Gaps = 62/484 (12%)

Query: 47   KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
            K+ H++I+ +G    ++  + LI +   S  G L  A  VF+   + + V WN+I+  ++
Sbjct: 631  KRAHARIVTSGDLPDRYLTNNLITM--YSKCGSLCSARQVFDKSSDRDLVTWNSILAAYA 688

Query: 107  L---SSSPVVAIKFYVRMILS--GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGL 161
                SS   V   F +  +L   GF     T   +LK C     +   + +H + +K+G 
Sbjct: 689  QFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGF 748

Query: 162  ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDE 221
            E D FV  +L+N+Y + G +  ARL+F+K   RDAV +  ++  Y    + D+A + F  
Sbjct: 749  ELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFS- 807

Query: 222  MPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC 281
                   F P+ S +  V+                        G N  V+N       + 
Sbjct: 808  -AFHRSGFXPDFSNLHCVIG-----------------------GVNSDVSNN----RKRH 839

Query: 282  GDLVK--ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS 339
             + VK  A  +F   +  ++ +WN  +  + H      A+  F+ +L+S I  + VT + 
Sbjct: 840  AEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVI 899

Query: 340  VLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK 399
            +L A      LDLG+ IHA + K+      V +  SL++MY+K G + AAE+ F      
Sbjct: 900  ILSAAVGADDLDLGEQIHALVIKS-SFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPEL 958

Query: 400  TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF 459
             L SWN MIS  A +    +A+  F  ++ +GL+PD  T   VL AC+     D G +YF
Sbjct: 959  DLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEG-EYF 1014

Query: 460  N------------AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
                          +I D  +S  L      +DL  + G  DEAE LL   +   D A W
Sbjct: 1015 TLGSQVHVYAIKCGIINDSFVSTAL------IDLYSKGGKMDEAEFLLHG-KYDFDLASW 1067

Query: 508  TSLL 511
             +++
Sbjct: 1068 NAIM 1071



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 168/384 (43%), Gaps = 41/384 (10%)

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
           +S   ++ +  GK+ HA ++  G   D ++  +LI MY++ G L SAR VF+KSS RD V
Sbjct: 619 RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678

Query: 198 SYTALITGYA-----SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
           ++ +++  YA     S   + +  +LF    +RE  F     T+  +L  C   G +++ 
Sbjct: 679 TWNSILAAYAQFADSSYENVLEGFRLFG--LLREFGFSITRLTLAPLLKLCLLSGFVQVS 736

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
             V       G   +L V+ AL+++Y K G + +AR LF+ + +RD + WNVM+  Y   
Sbjct: 737 ETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVEN 796

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
           S   EAL  F    +S   P+      V+                     N    NN   
Sbjct: 797 SFQDEALRFFSAFHRSGFXPDFSNLHCVIGGV------------------NSDVSNNRKR 838

Query: 373 WTSLIDMYA-KCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
               +  YA K         +F         +WN  ++     G+   A+  F  ++   
Sbjct: 839 HAEQVKAYAMKMFPFDQGSNIF---------AWNKKLTEFLHAGQIVAAIDCFKTLLRST 889

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
           +  D +T V +LSA   A  LD+G Q  +A++     +P +     ++++  +AG+   A
Sbjct: 890 IGHDSVTLVIILSAAVGADDLDLGEQ-IHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAA 948

Query: 492 EALLKTMEMKP--DAAIWTSLLGA 513
           E   KT    P  D   W +++ +
Sbjct: 949 E---KTFINSPELDLISWNTMISS 969



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 93/208 (44%), Gaps = 11/208 (5%)

Query: 38   SKC-TNMQNIKQVHSQIIKTGLHNTQFALSKLIEI-CAVSPFGDLSYALLVFETIREPNQ 95
            S C T ++  KQ+H+ ++K       F  + L+++ C     G +  A  VF  +     
Sbjct: 1210 SSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKC---GSVQDAYRVFRKMDVRKV 1266

Query: 96   VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG-KQIHA 154
            V WN ++ G +       A+  +  M  +G  P+  TF  +L +C+     SE  K   A
Sbjct: 1267 VFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDA 1326

Query: 155  HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVS-YTALITGYASRGYLD 213
                 G+  +   ++ L++   + G ++ A  V      + + S Y AL+    ++G  +
Sbjct: 1327 MFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAE 1386

Query: 214  DARQLFDEMPIREENFVPNESTVVTVLS 241
             A+++ D++   +    P++S+   +LS
Sbjct: 1387 TAKRVADKLLALD----PSDSSAYVLLS 1410


>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 271/659 (41%), Positives = 391/659 (59%), Gaps = 48/659 (7%)

Query: 5   PSSLTLSPSILHFPPSSDPPYK---------LLQNQPSLALLSKCTNMQNIKQVHSQIIK 55
           P +L +  SI H   S  P  K          ++  P L++L +C ++  +KQ+ +Q++ 
Sbjct: 23  PQNLGIIISIFHNSSSLSPITKTINWNTTHSFVRENPLLSILERCKSLVQLKQIQAQMVS 82

Query: 56  TGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAI 115
           TGL    FA S+L+  CA+S   +L Y   +   I+E N   WN  IRG+  S       
Sbjct: 83  TGLIENGFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGF 142

Query: 116 KFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINM 174
             Y RM+L G + P+ +T+P +LK C    +   G  +  HVLK G E D FVH + I M
Sbjct: 143 MLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITM 202

Query: 175 YAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNES 234
               GEL  A  VFNKS +RD V++ ++ITG   RG   +A +++ EM    E   PNE 
Sbjct: 203 LLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEM--EAEKVRPNEI 260

Query: 235 TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
           T++ ++S+C+ +  L LG      I+ HGL   + +TNAL+DMY KCG+L+ AR LF+++
Sbjct: 261 TMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNM 320

Query: 295 EKRDVISWNVMIGGY-------------------------------THTSDYKEALMLFR 323
            ++ ++SW  M+ GY                                     KEAL LF 
Sbjct: 321 AQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFH 380

Query: 324 QMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383
           +M    IEP+ VT ++ L AC+ LGALD+G WIH YI++ H+   +V+L T+L+DMYAKC
Sbjct: 381 EMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIER-HKLSIDVALGTALVDMYAKC 439

Query: 384 GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
           GNI  A QVF+ +  +   +W A+I GLA+HG A  ALS FS+MI  G+ PD+ITF+GVL
Sbjct: 440 GNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVL 499

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
           SAC H GL++ GR+YF+ M   + +SPKL+HY CMVDLLGRAG  +EAE L+K M M  D
Sbjct: 500 SACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAAD 559

Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563
           AA+  +L  ACRV+G +++GE  A  LLE++P++ G YVLL++MY+ A  W +  + R  
Sbjct: 560 AAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKL 619

Query: 564 LNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEML----DEIDALLEKSGFVP 618
           +NDKG++K PGCS +E+  +VHEF+V D  HPQS+ IYE L     ++D ++ K G+ P
Sbjct: 620 MNDKGVEKTPGCSLVEINGIVHEFVVRDVSHPQSEWIYECLVTLTKQLDVIVRKHGYFP 678


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 261/665 (39%), Positives = 402/665 (60%), Gaps = 12/665 (1%)

Query: 47   KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
            KQ+H  ++++GL       + LI +   +  G +S A  VF  + E + V WN +I G +
Sbjct: 926  KQIHGIVVRSGLDQVVSVGNCLINMYVKT--GSVSRARTVFWQMNEVDLVSWNTMISGCA 983

Query: 107  LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE-GKQIHAHVLKLGLESDP 165
            LS     ++  +V ++  G +P+ +T   +L++C+ +        QIHA  +K G+  D 
Sbjct: 984  LSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDS 1043

Query: 166  FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
            FV T+LI++Y+++G++E A  +F      D  S+ A++ GY   G    A +L+  + ++
Sbjct: 1044 FVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLY--ILMQ 1101

Query: 226  EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
            E     N+ T+     A   +  L+ G  + +++   G   +L V + ++DMY KCG++ 
Sbjct: 1102 ESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEME 1161

Query: 286  KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
             AR +F  I   D ++W  MI G       + AL  +  M  S ++P++ TF +++ AC+
Sbjct: 1162 SARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACS 1221

Query: 346  YLGALDLGKWIHAYIDKNHQKLN---NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
             L AL+ G+ IHA    N  KLN   +  + TSL+DMYAKCGNI+ A  +F       +A
Sbjct: 1222 LLTALEQGRQIHA----NTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIA 1277

Query: 403  SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
            SWNAMI GLA HG A++AL  F  M   G+ PD +TF+GVLSAC+H+GL+    + F +M
Sbjct: 1278 SWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSM 1337

Query: 463  IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
             + Y I P+++HY C+VD L RAG   EAE ++ +M  +  A+++ +LL ACRV    E 
Sbjct: 1338 QKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRET 1397

Query: 523  GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582
            G+ VA+ LL LEP +  AYVLLSN+YA A +W++VA+ R  +    +KK PG S +++ +
Sbjct: 1398 GKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKN 1457

Query: 583  VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEK 642
             VH F+ GD+ H ++  IY  ++ I   + + G++PDT   L D++EE KE +L +HSEK
Sbjct: 1458 KVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYLPDTDFALVDVEEEDKECSLYYHSEK 1517

Query: 643  LAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCS 702
            LAIAYGL+ T P TT+R++KNLRVCG+CH+A K ISK+F RE++ RD NRFHHF+ G CS
Sbjct: 1518 LAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISKVFEREVVLRDANRFHHFRSGVCS 1577

Query: 703  CNDYW 707
            C DYW
Sbjct: 1578 CGDYW 1582



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 143/550 (26%), Positives = 247/550 (44%), Gaps = 67/550 (12%)

Query: 23   PPYKLLQNQPS-LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFG 78
            PP  L+ + P   ++L       ++   K+ H++I+ +G H  +F  + LI +   S  G
Sbjct: 618  PPAHLIHSIPQWFSILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITM--YSKCG 675

Query: 79   DLSYALLVFETIREPNQ--VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNT-YTFPF 135
             LS A  +F+T  + ++  V WN I+  H+  +     +    R++   FV  T +T   
Sbjct: 676  SLSSARKLFDTTPDTSRDLVTWNAILSAHADKARDGFHL---FRLLRRSFVSATRHTLAP 732

Query: 136  ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
            + K C   ++ S  + +H + +K+GL+ D FV  +L+N+YA+ G +  AR++F+   LRD
Sbjct: 733  VFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRD 792

Query: 196  AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC-AHMGSLELGNW 254
             V +  ++  Y   G   +A  LF E         P++ T+ T+     +    LE   W
Sbjct: 793  VVLWNVMMKAYVDTGLEYEALLLFSE--FNRTGLRPDDVTLCTLARVVKSKQNVLE---W 847

Query: 255  VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
                ++ +G       T   +      G               DVI+WN  +  +    +
Sbjct: 848  QLKQLKAYG-------TKLFMYDDDDDGS--------------DVIAWNKTLSWFLQRGE 886

Query: 315  YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
              EA+  F  M+ S +  + +TF+ +L   A L  L+LGK IH  + ++      VS+  
Sbjct: 887  TWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLD-QVVSVGN 945

Query: 375  SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
             LI+MY K G++  A  VF  M    L SWN MISG A+ G  + ++ +F  ++  GL P
Sbjct: 946  CLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLP 1005

Query: 435  DDITFVGVLSACN------------HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482
            D  T   VL AC+            HA  +  G      ++ D  +S  L      +D+ 
Sbjct: 1006 DQFTVASVLRACSSLGGGCHLATQIHACAMKAG------VVLDSFVSTTL------IDVY 1053

Query: 483  GRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV 542
             ++G  +EAE L    +   D A W +++    V G  +  +++  ++L  E       +
Sbjct: 1054 SKSGKMEEAEFLFVNQD-GFDLASWNAMMHGYIVSG--DFPKALRLYILMQESGERANQI 1110

Query: 543  LLSNMYAGAG 552
             L+N    AG
Sbjct: 1111 TLANAAKAAG 1120



 Score =  135 bits (340), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 127/498 (25%), Positives = 218/498 (43%), Gaps = 32/498 (6%)

Query: 47   KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
            + +H   +K GL    F    L+ I A   FG +  A ++F+ +   + V+WN +++ + 
Sbjct: 747  ESLHGYAVKIGLQWDVFVAGALVNIYA--KFGRIREARVLFDGMGLRDVVLWNVMMKAYV 804

Query: 107  LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
             +     A+  +     +G  P+  T          ++ + + KQ   +VL+  L+    
Sbjct: 805  DTGLEYEALLLFSEFNRTGLRPDDVTL-------CTLARVVKSKQ---NVLEWQLKQLKA 854

Query: 167  VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
              T L  MY                   D +++   ++ +  RG   +A   F +M    
Sbjct: 855  YGTKLF-MYDD------------DDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMI--N 899

Query: 227  ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
                 +  T V +LS  A +  LELG  +  ++   GL   + V N LI+MY K G + +
Sbjct: 900  SRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSR 959

Query: 287  ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
            AR +F  + + D++SWN MI G   +   + ++ +F  +L+  + P+  T  SVL AC+ 
Sbjct: 960  ARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSS 1019

Query: 347  L-GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
            L G   L   IHA   K    L++  + T+LID+Y+K G ++ AE +F       LASWN
Sbjct: 1020 LGGGCHLATQIHACAMKAGVVLDSF-VSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWN 1078

Query: 406  AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
            AM+ G  + G   KAL L+  M   G + + IT      A      L  G+Q   A++  
Sbjct: 1079 AMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQ-IQAVVVK 1137

Query: 466  YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
               +  L     ++D+  + G  + A  +   +   PD   WT+++  C  +G+ E    
Sbjct: 1138 RGFNLDLFVISGVLDMYLKCGEMESARRIFNEIP-SPDDVAWTTMISGCVENGQEEHA-L 1195

Query: 526  VAKHLLELEPENPGAYVL 543
               H + L    P  Y  
Sbjct: 1196 FTYHHMRLSKVQPDEYTF 1213


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 263/672 (39%), Positives = 399/672 (59%), Gaps = 8/672 (1%)

Query: 35  ALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
            +L  C N +N+KQ   +HS IIK G    +F    L+++   S  G    A+ VF+TI+
Sbjct: 319 TVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDM--YSKCGLAIDAIGVFKTIK 376

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           +P+ V+W+ +I           +IK +  M L   +PN YT   +L +      +  G+ 
Sbjct: 377 KPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQS 436

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IHA V K G E+D  V  +L+ MY +NG +     ++     RD +S+ A ++G    G 
Sbjct: 437 IHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGM 496

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
            D    +F  M   EE F+PN  T +++L +C+ +  +  G  V + I  + L  N  V 
Sbjct: 497 YDRPLTIFYHML--EEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVC 554

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
            ALIDMY+KC  L  A   F  +  RD+ +W V+I  Y  T+  ++AL  FRQM Q  ++
Sbjct: 555 TALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVK 614

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           PN+ T    L  C+ L +L+ G+ +H+ + K+   ++++ + ++L+DMYAKCG ++ AE 
Sbjct: 615 PNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGH-VSDMFVGSALVDMYAKCGCMEEAEA 673

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           +F+ +  +   +WN +I G A +G+ +KAL+ F  M+ EG+ PD +TF G+LSAC+H GL
Sbjct: 674 LFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGL 733

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           ++ G+++FN+M +D+ ISP + H  CMVD+LGR G FDE E  ++ M++  +A IW ++L
Sbjct: 734 VEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVL 793

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
           GA ++H  L LGE  A  L EL+PE   +Y+LLSN++A  GRWDDV  +R+ ++ KG+KK
Sbjct: 794 GASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKK 853

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
            PGCS +E    VH F+  D  HPQ + I+  LDE+D  L    +VP T  VL+++ E  
Sbjct: 854 EPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETE 913

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           K+  L  HSE+LA+ + LIST     IRI KNLR+C +CH   K IS I N+EI+ RD  
Sbjct: 914 KKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVR 973

Query: 692 RFHHFKDGNCSC 703
           RFHHFK+G CSC
Sbjct: 974 RFHHFKNGACSC 985



 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 147/478 (30%), Positives = 255/478 (53%), Gaps = 7/478 (1%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L   S C  +   KQ+H+Q  K GL    F  S L+++ A    G++  A  +F  + E 
Sbjct: 220 LKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYA--KCGEIELASKMFIGMPEQ 277

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           N V WN ++ G++        +K +  M+      N +T   +LK CA    + +G+ IH
Sbjct: 278 NDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIH 337

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
           + ++K G E + F+   L++MY++ G    A  VF      D V ++ALIT    +G  +
Sbjct: 338 SLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSE 397

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           ++ +LF  M  R  + +PN+ T+ ++LSA  + G+L+ G  + + +  +G  +++ V+NA
Sbjct: 398 ESIKLFHLM--RLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNA 455

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           L+ MY K G +     L+ES+  RD+ISWN  + G      Y   L +F  ML+    PN
Sbjct: 456 LVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPN 515

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
             TF+S+L +C+ L  +  G+ +HA+I KN    NN  + T+LIDMYAKC  ++ A+  F
Sbjct: 516 MYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNF-VCTALIDMYAKCMYLEDADVAF 574

Query: 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLD 453
           + +  + L +W  +I+  A   + +KAL+ F +M  EG++P++ T  G LS C+    L+
Sbjct: 575 NRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLE 634

Query: 454 IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
            G+Q  + + +   +S        +VD+  + G  +EAEAL + + ++ D   W +++
Sbjct: 635 GGQQLHSMVFKSGHVSDMFVG-SALVDMYAKCGCMEEAEALFEAL-IRRDTIAWNTII 690



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 146/516 (28%), Positives = 260/516 (50%), Gaps = 19/516 (3%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ++L +C + +++   K +H  I+K  ++        L+ + A   +   +YA LV   + 
Sbjct: 117 SMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYS--AYARLVLAKMP 174

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           + + V W  +I+G         +I  +  M   G +PN +T    LK+C+   A+  GKQ
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +HA   KLGL  D FV ++L+++YA+ GE+E A  +F     ++ V++  L+ GYA RG 
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
           +    +LF  M   E +   NE T+ TVL  CA+  +L+ G  + SLI   G   N  + 
Sbjct: 295 VTGVLKLFCSM--MELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIG 352

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
             L+DMYSKCG  + A  +F++I+K D++ W+ +I         +E++ LF  M   +  
Sbjct: 353 CGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTL 412

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           PN  T  S+L A    G L  G+ IHA + K +    +V++  +L+ MY K G +    +
Sbjct: 413 PNQYTICSLLSAATNTGNLQYGQSIHACVWK-YGFETDVAVSNALVTMYMKNGCVHDGTK 471

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           +++ M  + L SWNA +SGL   G  D+ L++F  M+ EG  P+  TF+ +L +C+    
Sbjct: 472 LYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFD 531

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGC--MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
           +  GRQ    +I++        ++ C  ++D+  +    ++A+     + ++ D   WT 
Sbjct: 532 VHYGRQVHAHIIKN---QLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVR-DLFTWTV 587

Query: 510 LLGACRVHGRLELGESVAKHLLELEPE--NPGAYVL 543
           ++     + +   GE    +  +++ E   P  + L
Sbjct: 588 IITN---YAQTNQGEKALNYFRQMQQEGVKPNEFTL 620



 Score =  185 bits (469), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 127/411 (30%), Positives = 212/411 (51%), Gaps = 8/411 (1%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           +L+ CA   ++   K IH  ++K  +  D  +  SL+N+YA+      ARLV  K   RD
Sbjct: 118 MLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRD 177

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
            VS+TALI G  + G+ +D+  LF EM  + E  +PNE T+ T L AC+   +L+LG  +
Sbjct: 178 VVSWTALIQGLVAEGFANDSIYLFQEM--QNEGIMPNEFTLATGLKACSLCMALDLGKQM 235

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
            +     GL  +L V +AL+D+Y+KCG++  A  +F  + +++ ++WNV++ GY    D 
Sbjct: 236 HAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDV 295

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
              L LF  M++ +++ N+ T  +VL  CA    L  G+ IH+ I K   + N   +   
Sbjct: 296 TGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEF-IGCG 354

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM-IGEGLQP 434
           L+DMY+KCG    A  VF  +    +  W+A+I+ L   G++++++ LF  M +G+ L P
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTL-P 413

Query: 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494
           +  T   +LSA  + G L  G Q  +A +  Y     +     +V +  + G   +   L
Sbjct: 414 NQYTICSLLSAATNTGNLQYG-QSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKL 472

Query: 495 LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545
            ++M +  D   W + L      G  +   ++  H+LE E   P  Y  +S
Sbjct: 473 YESM-VDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLE-EGFIPNMYTFIS 521


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 267/650 (41%), Positives = 386/650 (59%), Gaps = 35/650 (5%)

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           +PN V W  +I G   +     A+  + +M+L G  PN+ T    + +C  +S +  G++
Sbjct: 324 KPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGRE 383

Query: 152 IHAHVLKLG-LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           IH + +K+  L+SD  V  SL++ YA+   +E AR  F      D VS+ A++ GYA RG
Sbjct: 384 IHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRG 443

Query: 211 YLDDARQLFDEMPIR--EENFV-------------------------------PNESTVV 237
             ++A +L  EM  +  E + +                               PN +T+ 
Sbjct: 444 SHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTIS 503

Query: 238 TVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR 297
             L+AC  + +L+LG  +   +  + +  +  V +ALI MYS C  L  A  +F  +  R
Sbjct: 504 GALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTR 563

Query: 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357
           DV+ WN +I     +     AL L R+M  SN+E N VT +S LPAC+ L AL  GK IH
Sbjct: 564 DVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIH 623

Query: 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA 417
            +I +      N  L  SLIDMY +CG+I+ + ++FD M  + L SWN MIS   MHG  
Sbjct: 624 QFIIRCGLDTCNFIL-NSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFG 682

Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
             A++LF +    GL+P+ ITF  +LSAC+H+GL++ G +YF  M  +Y + P ++ Y C
Sbjct: 683 MDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYAC 742

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537
           MVDLL RAG F+E    ++ M  +P+AA+W SLLGACR+H   +L E  A++L ELEP++
Sbjct: 743 MVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQS 802

Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQS 597
            G YVL++N+Y+ AGRW+D A IR  + ++G+ K PGCS IEV   +H F+VGD  HP  
Sbjct: 803 SGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLM 862

Query: 598 KHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTT 657
           + I   ++ +   +++ G+VPDT+ VL D+DE+ KE +L  HSEK+A+A+GLIST  GT 
Sbjct: 863 EQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTP 922

Query: 658 IRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +RI+KNLRVCG+CHSATK ISK+  R+II RD  RFHHF DG CSC DYW
Sbjct: 923 LRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 972



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 131/537 (24%), Positives = 245/537 (45%), Gaps = 71/537 (13%)

Query: 35  ALLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ++L KC  + N++   QVH+Q++  G+   +F  S+L+E+   +  G +  A  +F+ + 
Sbjct: 94  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQT--GCVEDARRMFDKMS 151

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           E N   W  I+  +         IK +  M+  G  P+ + FP + K+C+++     GK 
Sbjct: 152 ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 211

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           ++ ++L +G E +  V  S+++M+ + G ++ AR  F +   +D   +  +++GY S+G 
Sbjct: 212 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGE 271

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
              A +   +M +      P++ T   ++S  A  G  E                    +
Sbjct: 272 FKKALKCISDMKL--SGVKPDQVTWNAIISGYAQSGQFE------------------EAS 311

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
              ++M    G L   +D      K +V+SW  +I G        EAL +FR+M+   ++
Sbjct: 312 KYFLEM----GGL---KDF-----KPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVK 359

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           PN +T  S + AC  L  L  G+ IH Y  K  +  +++ +  SL+D YAKC +++ A +
Sbjct: 360 PNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARR 419

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
            F  +    L SWNAM++G A+ G  ++A+ L S M  +G++PD IT+ G+++     G 
Sbjct: 420 KFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGD 479

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
                ++F  M                                  +M M P+    +  L
Sbjct: 480 GKAALEFFQRM---------------------------------HSMGMDPNTTTISGAL 506

Query: 512 GACRVHGRLELGESVAKHLLELEPE-NPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
            AC     L+LG+ +  ++L    E + G    L +MY+G    +   ++ + L+ +
Sbjct: 507 AACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTR 563



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 149/603 (24%), Positives = 251/603 (41%), Gaps = 123/603 (20%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +   C+ ++N    K V+  ++  G          ++++      G +  A   FE I  
Sbjct: 196 VFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDM--FIKCGRMDIARRFFEEIEF 253

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            +  +WN ++ G++       A+K    M LSG  P+  T+                   
Sbjct: 254 KDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTW------------------- 294

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF-NKSSLRD----AVSYTALITGYA 207
                            ++I+ YAQ+G+ E A   F     L+D     VS+TALI G  
Sbjct: 295 ----------------NAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSE 338

Query: 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV---CSLIEGHGL 264
             GY  +A  +F +M +  E   PN  T+ + +SAC ++  L  G  +   C  +E   L
Sbjct: 339 QNGYDFEALSVFRKMVL--EGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVE--EL 394

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY--------------- 309
            S+L V N+L+D Y+KC  +  AR  F  I++ D++SWN M+ GY               
Sbjct: 395 DSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSE 454

Query: 310 --------------------THTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA 349
                               T   D K AL  F++M    ++PN  T    L AC  +  
Sbjct: 455 MKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRN 514

Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
           L LGK IH Y+ +NH +L +  + ++LI MY+ C +++ A  VF  +  + +  WN++IS
Sbjct: 515 LKLGKEIHGYVLRNHIEL-STGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIIS 573

Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ------------ 457
             A  G++  AL L   M    ++ + +T V  L AC+    L  G++            
Sbjct: 574 ACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDT 633

Query: 458 ---YFNAMIQDYKISPKLQH---------------YGCMVDLLGRAGLFDEAEAL---LK 496
                N++I  Y     +Q                +  M+ + G  G   +A  L    +
Sbjct: 634 CNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFR 693

Query: 497 TMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA--YVLLSNMYAGAGRW 554
           TM +KP+   +T+LL AC   G +E G    K +      +P    Y  + ++ + AG++
Sbjct: 694 TMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQF 753

Query: 555 DDV 557
           ++ 
Sbjct: 754 NET 756



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 173/356 (48%), Gaps = 20/356 (5%)

Query: 192 SLRDAVSYTALITGYAS------RGYLDDARQLFDEMPIREENFVPNESTVV--TVLSAC 243
           +LR   +    ITG++        G L++A  L   M +      P+E   +  ++L  C
Sbjct: 44  NLRKLTNARQRITGFSGGGSVHRNGVLNNAAMLLSSMDLTN----PDECIEIYASILQKC 99

Query: 244 AHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN 303
             + +L LG  V + +  +G+     + + L+++Y + G +  AR +F+ + +R+V SW 
Sbjct: 100 RKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWT 159

Query: 304 VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363
            ++  Y    DY+E + LF  M+   + P+   F  V  AC+ L    +GK ++ Y+   
Sbjct: 160 AIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSI 219

Query: 364 HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSL 423
             +  N  +  S++DM+ KCG +  A + F+ + +K +  WN M+SG    G+  KAL  
Sbjct: 220 GFE-GNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKC 278

Query: 424 FSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM--IQDYKISPKLQHYGCMVDL 481
            S M   G++PD +T+  ++S    +G  +   +YF  M  ++D+K  P +  +  ++  
Sbjct: 279 ISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFK--PNVVSWTALIAG 336

Query: 482 LGRAGLFDEAEALLKTMEM---KPDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534
             + G   EA ++ + M +   KP++    S + AC     L  G  +  + +++E
Sbjct: 337 SEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVE 392



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 137/278 (49%), Gaps = 6/278 (2%)

Query: 33  SLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +LA   +  N++  K++H  +++  +  +    S LI +   S    L  A  VF  +  
Sbjct: 505 ALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISM--YSGCDSLEVACSVFSELST 562

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V+WN+II   + S   V A+     M LS    NT T    L +C+K++A+ +GK+I
Sbjct: 563 RDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEI 622

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H  +++ GL++  F+  SLI+MY + G ++ +R +F+    RD VS+  +I+ Y   G+ 
Sbjct: 623 HQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFG 682

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVT 271
            DA  LF +   R     PN  T   +LSAC+H G +E G  +   +   + +   +   
Sbjct: 683 MDAVNLFQQ--FRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQY 740

Query: 272 NALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGG 308
             ++D+ S+ G   +  +  E +  + +   W  ++G 
Sbjct: 741 ACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGA 778


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 265/652 (40%), Positives = 389/652 (59%), Gaps = 34/652 (5%)

Query: 79  DLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRM----------ILSGFVP 128
           +L  A  +FE + E +   WN ++ G++ +     A   + RM          +LS +V 
Sbjct: 141 NLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQ 200

Query: 129 NTY------------TFPFILKSCAKISAISEGKQIHAHVLKLGLE-SDPFVHTSLINMY 175
           N+              +  +  +C     + + K + A      +   D     ++I  Y
Sbjct: 201 NSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGY 260

Query: 176 AQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNEST 235
           AQ+G+++ AR +F++S ++D  ++TA+++GY     +++AR+LFD+MP R      NE +
Sbjct: 261 AQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPER------NEVS 314

Query: 236 VVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE 295
              +L+       +E+   +  ++       N+   N +I  Y++CG + +A++LF+ + 
Sbjct: 315 WNAMLAGYVQGERMEMAKELFDVMPCR----NVSTWNTMITGYAQCGKISEAKNLFDKMP 370

Query: 296 KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKW 355
           KRD +SW  MI GY+ +    EAL LF QM +     N  +F S L  CA + AL+LGK 
Sbjct: 371 KRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQ 430

Query: 356 IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHG 415
           +H  + K   +     +  +L+ MY KCG+I+ A  +F  M  K + SWN MI+G + HG
Sbjct: 431 LHGRLVKGGYE-TGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHG 489

Query: 416 KADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY 475
             + AL  F  M  EGL+PDD T V VLSAC+H GL+D GRQYF  M QDY + P  QHY
Sbjct: 490 FGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHY 549

Query: 476 GCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEP 535
            CMVDLLGRAGL ++A  L+K M  +PDAAIW +LLGA RVHG  EL E+ A  +  +EP
Sbjct: 550 ACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEP 609

Query: 536 ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHP 595
           EN G YVLLSN+YA +GRW DV  +R R+ DKG+KKVPG S IE+ +  H F VGD+ HP
Sbjct: 610 ENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHP 669

Query: 596 QSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPG 655
           +   I+  L+E+D  ++K+G+V  TS VL+D++EE KE  + +HSE+LA+AYG++    G
Sbjct: 670 EKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSG 729

Query: 656 TTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
             IR++KNLRVC +CH+A K +++I  R II RD NRFHHFKDG+CSC DYW
Sbjct: 730 RPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 138/526 (26%), Positives = 225/526 (42%), Gaps = 117/526 (22%)

Query: 168 HTSLINMYAQNGELESARLVFNKSSLRDAVSYTALI------------------------ 203
           +  +I+ Y +NGE E AR +F++   RD VS+  +I                        
Sbjct: 98  YNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDV 157

Query: 204 -------TGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLS------ACAHMGSLE 250
                  +GYA  G +DDAR +FD MP  E+N V   + +   +       AC    S E
Sbjct: 158 CSWNTMLSGYAQNGCVDDARSVFDRMP--EKNDVSWNALLSAYVQNSKMEEACMLFKSRE 215

Query: 251 ---LGNWVC---------SLIEGHGLGSNLHVT-----NALIDMYSKCGDLVKARDLFES 293
              L +W C          ++E      +++V      N +I  Y++ G + +AR LF+ 
Sbjct: 216 NWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDE 275

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
              +DV +W  M+ GY      +EA  LF +M     E N+V++ ++L        +++ 
Sbjct: 276 SPVQDVFTWTAMVSGYIQNRMVEEARELFDKM----PERNEVSWNAMLAGYVQGERMEMA 331

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAM 413
           K +   +        NVS W ++I  YA+CG I  A+ +FD M  +   SW AMI+G + 
Sbjct: 332 KELFDVM-----PCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQ 386

Query: 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ-DYKISPKL 472
            G + +AL LF +M  EG + +  +F   LS C     L++G+Q    +++  Y+     
Sbjct: 387 SGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYET---- 442

Query: 473 QHYGCMVD-----LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
              GC V      +  + G  +EA  L K M  K D   W +++     HG    GE VA
Sbjct: 443 ---GCFVGNALLLMYCKCGSIEEANDLFKEMAGK-DIVSWNTMIAGYSRHG---FGE-VA 494

Query: 528 KHLLE------LEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
               E      L+P++     +LS            A   T L DKG +           
Sbjct: 495 LRFFESMKREGLKPDDATMVAVLS------------ACSHTGLVDKGRQYFY-------- 534

Query: 582 SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
           ++  ++     V P S+H   M+D    LL ++G + D   ++ +M
Sbjct: 535 TMTQDY----GVMPNSQHYACMVD----LLGRAGLLEDAHNLMKNM 572



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 132/317 (41%), Gaps = 49/317 (15%)

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
           S++   N  I  Y + G   +A  +F+ + +   +S+N MI GY    +++ A  LF +M
Sbjct: 62  SDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEM 121

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
            + ++   +V          Y+   +LGK    +         +V  W +++  YA+ G 
Sbjct: 122 PERDLVSWNVMIK------GYVRNRNLGKARELF---EIMPERDVCSWNTMLSGYAQNGC 172

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF--------------------S 425
           +  A  VFD M  K   SWNA++S    + K ++A  LF                     
Sbjct: 173 VDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKK 232

Query: 426 RMIGEGLQ-------PDDITFVGVLSACNHAGLLDIGRQYFN-AMIQDYKISPKLQHYGC 477
           + I E  Q        D +++  +++    +G +D  RQ F+ + +QD      +  +  
Sbjct: 233 KKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQD------VFTWTA 286

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEP-E 536
           MV    +  + +EA  L   M  + + + W ++L       R+E+    AK L ++ P  
Sbjct: 287 MVSGYIQNRMVEEARELFDKMPERNEVS-WNAMLAGYVQGERMEM----AKELFDVMPCR 341

Query: 537 NPGAYVLLSNMYAGAGR 553
           N   +  +   YA  G+
Sbjct: 342 NVSTWNTMITGYAQCGK 358


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 267/675 (39%), Positives = 406/675 (60%), Gaps = 7/675 (1%)

Query: 36  LLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +L  C+ +  I+   ++HS     GL +  F  + L++  A    G L  A  +F ++  
Sbjct: 115 VLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYA--KCGILVEAQRLFSSMSH 172

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V WN +I G SL      A++  ++M   G  PN+ T   +L +  +  A+  GK +
Sbjct: 173 RDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKAL 232

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H + ++   ++   V T L++MYA+   L  AR +F+   +R+ VS++A+I GY     +
Sbjct: 233 HGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCM 292

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
            +A +LFD+M I ++   P   T+ +VL ACA +  L  G  +   I   G   ++ + N
Sbjct: 293 KEALELFDQM-ILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGN 351

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            L+ MY+KCG +  A   F+ +  +D +S++ ++ G     +   AL +FR M  S I+P
Sbjct: 352 TLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDP 411

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           +  T L VLPAC++L AL  G   H Y+       + + +  +LIDMY+KCG I  A +V
Sbjct: 412 DLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTL-ICNALIDMYSKCGKISFAREV 470

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F+ M    + SWNAMI G  +HG   +AL LF  ++  GL+PDDITF+ +LS+C+H+GL+
Sbjct: 471 FNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLV 530

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
             GR +F+AM +D+ I P+++H  CMVD+LGRAGL DEA   ++ M  +PD  IW++LL 
Sbjct: 531 MEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLS 590

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           ACR+H  +ELGE V+K +  L PE+ G +VLLSN+Y+ AGRWDD A IR    D G+KK+
Sbjct: 591 ACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKI 650

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
           PGCS IE+  +VH F+ GD+ H Q   I   L+E+   +++ G+  + S V  D++EE K
Sbjct: 651 PGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEK 710

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
           E  L +HSEKLAIA+G+++ K G  I + KNLRVCG+CH+A K ++ I  REI  RD NR
Sbjct: 711 EQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHAAIKFMTVITKREITVRDANR 770

Query: 693 FHHFKDGNCSCNDYW 707
           FHHFK+G C+C D+W
Sbjct: 771 FHHFKNGTCNCGDFW 785



 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 172/499 (34%), Positives = 259/499 (51%), Gaps = 11/499 (2%)

Query: 24  PYKLLQNQPSLALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDL 80
           P +       L LL  C   +++   K++H   +K   +     L KL  +        +
Sbjct: 2   PLRXEVKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRL--YLSCNQV 59

Query: 81  SYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSC 140
             A  +F+ I  P+ ++WN IIR ++ +     AI  Y  M+  G  PN YT+PF+LK+C
Sbjct: 60  VLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKAC 119

Query: 141 AKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYT 200
           + + AI +G +IH+H    GLESD FV T+L++ YA+ G L  A+ +F+  S RD V++ 
Sbjct: 120 SGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWN 179

Query: 201 ALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE 260
           A+I G +  G  DDA QL   M ++EE   PN ST+V VL       +L  G  +     
Sbjct: 180 AMIAGCSLYGLCDDAVQLI--MQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCV 237

Query: 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALM 320
                + + V   L+DMY+KC  L+ AR +F+ +  R+ +SW+ MIGGY  +   KEAL 
Sbjct: 238 RRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALE 297

Query: 321 LFRQM-LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
           LF QM L+  ++P  VT  SVL ACA L  L  G+ +H YI K    L ++ L  +L+ M
Sbjct: 298 LFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVL-DILLGNTLLSM 356

Query: 380 YAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439
           YAKCG I  A + FD M  K   S++A++SG   +G A  ALS+F  M   G+ PD  T 
Sbjct: 357 YAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTM 416

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME 499
           +GVL AC+H   L  G      +I     +  L     ++D+  + G    A  +   M+
Sbjct: 417 LGVLPACSHLAALQHGFCSHGYLIVRGFATDTLI-CNALIDMYSKCGKISFAREVFNRMD 475

Query: 500 MKPDAAIWTSLLGACRVHG 518
            + D   W +++    +HG
Sbjct: 476 -RHDIVSWNAMIIGYGIHG 493


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 275/686 (40%), Positives = 413/686 (60%), Gaps = 17/686 (2%)

Query: 30  NQPSLA-LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALL 85
           N+ SL+ +++ CT +++    +++H  +IK G  +  F+ + L+++ A    G L  A  
Sbjct: 110 NEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYA--KVGILEDASS 167

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145
           VF+ I +P+ V WN II G  L      A++    M  SG  PN +T    LK+CA ++ 
Sbjct: 168 VFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMAL 227

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
              G+Q+H+ ++K+ + SD F+   LI+MY++   ++ ARLVF     RD +++ A+I+G
Sbjct: 228 RELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISG 287

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           ++     ++A  LF  M      F  N++T+ TVL + A + +    N++C  I    L 
Sbjct: 288 HSQNEEDEEAASLFPLMHTEGIGF--NQTTLSTVLKSIAALQA----NYMCRQIHALSLK 341

Query: 266 SNL----HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALML 321
           S      +V N+LID Y KCG +  A  +FE     D++ +  ++  Y      +EAL L
Sbjct: 342 SGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRL 401

Query: 322 FRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381
           + +M    I+P+     S+L ACA L A + GK +H +I K    ++++    SL++MYA
Sbjct: 402 YLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILK-FGFMSDIFAGNSLVNMYA 460

Query: 382 KCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVG 441
           KCG+I+ A   F  +  + + SW+AMI GLA HG   +AL LF +M+  G+ P+ IT V 
Sbjct: 461 KCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVS 520

Query: 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK 501
           VL ACNHAGL+   + YFN+M   + I P  +HY CM+DLLGRAG  + A  L+  M  +
Sbjct: 521 VLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQ 580

Query: 502 PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIR 561
            +A +W +LLGA R+H  ++LGE  A+ LL LEPE  G +VLL+N+YA  G WD VA +R
Sbjct: 581 ANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVR 640

Query: 562 TRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTS 621
             + D  +KK PG S +EV   V+ F+VGD+ H +S  IY  LDE+  LL+K+G+VP   
Sbjct: 641 RLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSRSTEIYAKLDELSDLLKKAGYVPMVE 700

Query: 622 EVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIF 681
             L+D++   KE  L HHSEKLA+A+GLI+T PG  IR+ KNLR+C +CH+  K ISKI 
Sbjct: 701 IDLHDVERSEKEQLLYHHSEKLAVAFGLIATPPGAPIRVKKNLRICFDCHTVLKFISKIV 760

Query: 682 NREIIARDRNRFHHFKDGNCSCNDYW 707
           +REII RD NRFHHF++G+CSC +YW
Sbjct: 761 SREIIVRDTNRFHHFREGSCSCGEYW 786



 Score =  218 bits (556), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 146/503 (29%), Positives = 259/503 (51%), Gaps = 12/503 (2%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICA-VSPFGDLSYALLVFETI 90
           ++L  CT  +++   KQVH  ++ TG  + +F  + L+ + A    FGD   A  +F+ I
Sbjct: 15  SVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGD---ARSLFDAI 71

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            + + V WN +   +  S     A+  +  M+LSG  PN ++   ++  C  +    +G+
Sbjct: 72  PDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGR 131

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           +IH +++KLG +SD F   +L++MYA+ G LE A  VF++ +  D VS+ A+I G     
Sbjct: 132 KIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHE 191

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
           Y   A +L  EM   +    PN  T+ + L ACA M   ELG  + S +    +GS+  +
Sbjct: 192 YHHRALELLREM--NKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFL 249

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
              LIDMYSKC  +  AR +F+ + +RD+I+WN +I G++   + +EA  LF  M    I
Sbjct: 250 GVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGI 309

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
             N  T  +VL + A L A  + + IHA   K+  + +N  +  SLID Y KCG+++ A 
Sbjct: 310 GFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVV-NSLIDTYGKCGHVEDAT 368

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           +VF+      L  + ++++  A  G+ ++AL L+  M   G++PD      +L+AC    
Sbjct: 369 RVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLS 428

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
             + G+Q  +  I  +     +     +V++  + G  ++A      + ++   + W+++
Sbjct: 429 AYEQGKQ-VHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVS-WSAM 486

Query: 511 LGACRVHGRLELGESVAKHLLEL 533
           +G    HG  +    + K +L++
Sbjct: 487 IGGLAQHGYGKEALQLFKQMLKV 509



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 149/483 (30%), Positives = 234/483 (48%), Gaps = 37/483 (7%)

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           M L G   N + FP +LK+C     +  GKQ+H  V+  G +SD FV  SL+ +YA+ G 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
              AR +F+    R  VS+ AL + Y       +A  LF +M +      PNE ++ +++
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVL--SGIRPNEFSLSSMI 118

Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVI 300
           + C  +     G  +   +   G  S+    NAL+DMY+K G L  A  +F+ I K D++
Sbjct: 119 NVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIV 178

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           SWN +I G      +  AL L R+M +S + PN  T  S L ACA +   +LG+ +H+ +
Sbjct: 179 SWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSL 238

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
            K     ++  L   LIDMY+KC ++  A  VF  M  + + +WNA+ISG + + + ++A
Sbjct: 239 IKMDMGSDSF-LGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEA 297

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSA---------CN--HAGLLDIGRQY----FNAMIQD 465
            SLF  M  EG+  +  T   VL +         C   HA  L  G ++     N++I  
Sbjct: 298 ASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDT 357

Query: 466 Y-------------KISP--KLQHYGCMVDLLGRAGLFDEAEALLKTME---MKPDAAIW 507
           Y             + SP   L  +  +V    + G  +EA  L   M+   +KPD+ + 
Sbjct: 358 YGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVC 417

Query: 508 TSLLGACRVHGRLELGESVAKHLLELE-PENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
           +SLL AC      E G+ V  H+L+     +  A   L NMYA  G  +D +   +R+  
Sbjct: 418 SSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPV 477

Query: 567 KGM 569
           +G+
Sbjct: 478 RGI 480


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 270/666 (40%), Positives = 411/666 (61%), Gaps = 15/666 (2%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEI-CAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           +QVH   +K GL       + LI + C +   G    A  VF  + E + + WN++I G 
Sbjct: 342 QQVHCMALKLGLDLMLTVSNSLINMYCKLRKIG---LARTVFNNMSERDLISWNSVIAGI 398

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKI-SAISEGKQIHAHVLKLGLESD 164
           + S   V A+  +++++  G  P+ YT   +LK+ + +   +S  KQIH H +K    +D
Sbjct: 399 AQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVAD 458

Query: 165 PFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPI 224
            FV T+LI+ Y++N  ++ A ++F +++  D V++ A+++GY          +LF  M  
Sbjct: 459 SFVSTALIDAYSRNRCMKEAEVLFGRNNF-DLVAWNAMMSGYTQSHDGHKTLELFALMHK 517

Query: 225 REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
           + E    ++ T+ TVL  C  + ++  G  V +     G   +L V++ ++DMY KCGD+
Sbjct: 518 QGER--SDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDM 575

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
             A+  F+SI   D ++W  +I G     + + AL +F QM    + P++ T  ++  A 
Sbjct: 576 SAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKAS 635

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVS---LWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
           + L AL+ G+ IHA    N  KLN  S   + TSL+DMYAKCG+I  A  +F  +    +
Sbjct: 636 SCLTALEQGRQIHA----NALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNI 691

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
            +WNAM+ GLA HG+  +AL LF +M   G++PD +TF+GVLSAC+H+GL+    +Y  +
Sbjct: 692 TAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRS 751

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
           M +DY I P+++HY C+ D LGRAGL  EAE L+ +M M+  A+++ +LL ACRV G  E
Sbjct: 752 MHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTE 811

Query: 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
            G+ VA  LLELEP +  AYVLLSNMYA A +WD++   RT +    +KK PG S IEV 
Sbjct: 812 TGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVK 871

Query: 582 SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
           + +H F+V D+ +PQ++ IY+ + ++   +++ G+VP+T   L D++EE KE AL +HSE
Sbjct: 872 NKIHLFVVDDRSNPQTELIYKKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSE 931

Query: 642 KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
           KLA+A+GL+ST P T IR++KNLRVCG+CH+A K ISK+++REI+ RD NRFH FKDG C
Sbjct: 932 KLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYISKVYDREIVLRDANRFHRFKDGIC 991

Query: 702 SCNDYW 707
           SC DYW
Sbjct: 992 SCGDYW 997



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 148/477 (31%), Positives = 235/477 (49%), Gaps = 32/477 (6%)

Query: 56  TGLHNTQFALSKLIEICA-------VSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           +GLH  +  L  L  I         V  F + + A  V E I        N I+ G+  +
Sbjct: 247 SGLHPNEITLRLLSRISGDDSEAGQVKSFENGNDASAVSEIISR------NKILSGYLHA 300

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVH 168
                 +K ++ M+ S    +  TF  +L +  ++ +++ G+Q+H   LKLGL+    V 
Sbjct: 301 GQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVS 360

Query: 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
            SLINMY +  ++  AR VFN  S RD +S+ ++I G A      +A  LF  M +    
Sbjct: 361 NSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLF--MQLLRCG 418

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN----LHVTNALIDMYSKCGDL 284
             P+  T+ +VL A +   SL  G  +   I  H + +N      V+ ALID YS+   +
Sbjct: 419 LKPDHYTMTSVLKAAS---SLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCM 475

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
            +A  LF      D+++WN M+ GYT + D  + L LF  M +     +D T  +VL  C
Sbjct: 476 KEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTC 534

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTS--LIDMYAKCGNIKAAEQVFDGMGYKTLA 402
            +L A++ GK +HAY  K+   L+   LW S  ++DMY KCG++ AA+  FD +      
Sbjct: 535 GFLFAINQGKQVHAYAIKSGYDLD---LWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDV 591

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ-YFNA 461
           +W  +ISG   +G+ ++AL +FS+M   G+ PD+ T   +  A +    L+ GRQ + NA
Sbjct: 592 AWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANA 651

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           +  +    P +     +VD+  + G  D+A  L K +EM    A W ++L     HG
Sbjct: 652 LKLNCTSDPFVG--TSLVDMYAKCGSIDDAYCLFKRIEMMNITA-WNAMLVGLAQHG 705



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 156/612 (25%), Positives = 255/612 (41%), Gaps = 103/612 (16%)

Query: 50  HSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSS 109
           H    K GL    F    L+ I     FG +    ++FE +   + V+WN +++ +    
Sbjct: 175 HGYACKIGLDGDDFVAGALVNI--YLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMG 232

Query: 110 SPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAI-SEGKQIHAHVLKLGLESDPFVH 168
               AI        SG  PN  T    L+  ++IS   SE  Q+ +              
Sbjct: 233 FKEEAIDLSSAFHTSGLHPNEIT----LRLLSRISGDDSEAGQVKSF------------- 275

Query: 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
                   +NG         + S++ + +S   +++GY   G      + F  M + E +
Sbjct: 276 --------ENGN--------DASAVSEIISRNKILSGYLHAGQYSALLKCF--MDMVESD 317

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288
              ++ T + VL+    + SL LG  V  +    GL   L V+N+LI+MY K   +  AR
Sbjct: 318 LECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLAR 377

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL- 347
            +F ++ +RD+ISWN +I G   +    EA+ LF Q+L+  ++P+  T  SVL A + L 
Sbjct: 378 TVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLP 437

Query: 348 GALDLGKWIHAYIDKNHQKLNNVS---LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
             L L K IH +  K     NNV+   + T+LID Y++   +K AE +F G     L +W
Sbjct: 438 EGLSLSKQIHVHAIKT----NNVADSFVSTALIDAYSRNRCMKEAEVLF-GRNNFDLVAW 492

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
           NAM+SG        K L LF+ M  +G + DD T   VL  C     ++ G+Q     I+
Sbjct: 493 NAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIK 552

Query: 465 D-YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR---- 519
             Y +   L     ++D+  + G    A+    ++ + PD   WT+L+  C  +G     
Sbjct: 553 SGYDLD--LWVSSGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTLISGCIENGEEERA 609

Query: 520 -------------------------------LELGESVAKHLLELE-PENPGAYVLLSNM 547
                                          LE G  +  + L+L    +P     L +M
Sbjct: 610 LHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDM 669

Query: 548 YAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEI 607
           YA  G  DD   +  R+    M  +   +++         LVG   H + K   ++  ++
Sbjct: 670 YAKCGSIDDAYCLFKRIE---MMNITAWNAM---------LVGLAQHGEGKEALQLFKQM 717

Query: 608 DALLEKSGFVPD 619
           ++L    G  PD
Sbjct: 718 ESL----GIKPD 725



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 129/469 (27%), Positives = 212/469 (45%), Gaps = 73/469 (15%)

Query: 5   PSSLTLSPSI--LHFPPSSDPPYKL-------------------LQNQPSLA--LLSKCT 41
           P S   +P +  L F PS  PP +L                   L++  S +  +L KCT
Sbjct: 9   PFSFHRAPKVQCLFFFPSLPPPLRLTSAASPFSSSSTSSQCFGFLRDAISTSDLMLGKCT 68

Query: 42  NMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNI 101
                   H++I+    +  +F ++ LI +   S  G L+YA  VF+ + E + V WN+I
Sbjct: 69  --------HARILALEENPERFLVNNLISM--YSKCGSLTYARRVFDKMPERDLVSWNSI 118

Query: 102 IRGHSLSSSPVVA-IK--FYVRMILSGFVPNT--YTFPFILKSCAKISAISEGKQIHAHV 156
           +  ++ SS  VV  +K  F +  IL   V  T   T   +LK C     +   +  H + 
Sbjct: 119 LAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYA 178

Query: 157 LKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDAR 216
            K+GL+ D FV  +L+N+Y + G+++  R++F +   RD V +  ++  Y   G+ ++A 
Sbjct: 179 CKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAI 238

Query: 217 QLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALID 276
            L            PNE T+  +                 S I G               
Sbjct: 239 DL--SSAFHTSGLHPNEITLRLL-----------------SRISGDD------------- 266

Query: 277 MYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVT 336
             S+ G +    +  ++    ++IS N ++ GY H   Y   L  F  M++S++E + VT
Sbjct: 267 --SEAGQVKSFENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVT 324

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
           F+ VL     L +L LG+ +H    K    L  +++  SLI+MY K   I  A  VF+ M
Sbjct: 325 FILVLATAVRLDSLALGQQVHCMALKLGLDL-MLTVSNSLINMYCKLRKIGLARTVFNNM 383

Query: 397 GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
             + L SWN++I+G+A      +A+ LF +++  GL+PD  T   VL A
Sbjct: 384 SERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKA 432



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 145/331 (43%), Gaps = 48/331 (14%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
            L+     S +  GK  HA +L L    + F+  +LI+MY++ G L  AR VF+K   RD
Sbjct: 52  FLRDAISTSDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERD 111

Query: 196 AVSYTALITGYA--SRGYLDDARQLFDEMPI-REENFVPNESTVVTVLSACAHMGSLELG 252
            VS+ +++  YA  S G +++ ++ F    I R++    +  T+  +L  C H G     
Sbjct: 112 LVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSG----- 166

Query: 253 NWVCSLIEGHGLGSNL------HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMI 306
            +VC+    HG    +       V  AL+++Y K G + + R LFE +  RDV+ WN+M+
Sbjct: 167 -YVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLML 225

Query: 307 GGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK 366
             Y      +EA+ L      S + PN++T                              
Sbjct: 226 KAYLEMGFKEEAIDLSSAFHTSGLHPNEIT------------------------------ 255

Query: 367 LNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSR 426
              + L + +    ++ G +K+ E   D      + S N ++SG    G+    L  F  
Sbjct: 256 ---LRLLSRISGDDSEAGQVKSFENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFMD 312

Query: 427 MIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
           M+   L+ D +TF+ VL+       L +G+Q
Sbjct: 313 MVESDLECDQVTFILVLATAVRLDSLALGQQ 343



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 113/278 (40%), Gaps = 48/278 (17%)

Query: 33  SLALLSKC-TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           +LA  S C T ++  +Q+H+  +K    +  F  + L+++ A    G +  A  +F+ I 
Sbjct: 630 TLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYA--KCGSIDDAYCLFKRIE 687

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG-K 150
             N   WN ++ G +       A++ + +M   G  P+  TF  +L +C+    +SE  K
Sbjct: 688 MMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYK 747

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            I                 S+   Y    E+E                Y+ L       G
Sbjct: 748 YIR----------------SMHRDYGIKPEIE---------------HYSCLADALGRAG 776

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS-LIEGHGLGSNLH 269
            + +A  L D M +       + S   T+L+AC   G  E G  V + L+E   L S+ +
Sbjct: 777 LVKEAENLIDSMSME-----ASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAY 831

Query: 270 VTNALIDMY---SKCGDLVKARDLFE--SIEKRDVISW 302
           V   L +MY   SK  ++  AR + +   ++K    SW
Sbjct: 832 VL--LSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSW 867


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 282/727 (38%), Positives = 410/727 (56%), Gaps = 59/727 (8%)

Query: 36  LLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +L  C  + +++    VH+ +   GL +  F  + ++ +      G L  A  +F+ + E
Sbjct: 133 VLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAM--YGRCGALDDAHQMFDEVLE 190

Query: 93  ---PNQVIWNNIIRGHSLSSSPVVAIKFYVRM---ILSGFVPNTYTFPFILKSCAKISAI 146
               + V WN+I+  +        A++   RM         P+  T   IL +CA + A+
Sbjct: 191 RKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFAL 250

Query: 147 SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGY 206
             GKQ+H   ++ GL  D FV  +L++MYA+  ++  A  VF     +D VS+ A++TGY
Sbjct: 251 QHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGY 310

Query: 207 ASRGYLDDARQLFDEMPIREEN-----------------------------------FVP 231
           +  G  D A  LF  M  +EE+                                     P
Sbjct: 311 SQIGSFDSALSLFKMM--QEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEP 368

Query: 232 NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN-------LHVTNALIDMYSKCGDL 284
           N  T+ ++LS CA +G+L  G    + +  + L  N       L V N LIDMY+KC   
Sbjct: 369 NVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSY 428

Query: 285 VKARDLFESIEKRD--VISWNVMIGGYTHTSDYKEALMLFRQMLQ--SNIEPNDVTFLSV 340
             AR +F+SIE +D  V++W VMIGGY    +  +AL LF Q+ +  ++++PN  T    
Sbjct: 429 RVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCA 488

Query: 341 LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT 400
           L ACA LG L LG+ +HAY  +N  +   + +   LIDMY+K G+I AA  VFD M  + 
Sbjct: 489 LMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRN 548

Query: 401 LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFN 460
           + SW ++++G  MHG+ ++AL LF +M   G   D ITF+ VL AC+H+G++D G  YF+
Sbjct: 549 VVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFH 608

Query: 461 AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRL 520
            M++ + I+P  +HY CMVDLLGRAG  +EA  L+K M M+P A +W +LL A R+H  +
Sbjct: 609 DMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANI 668

Query: 521 ELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEV 580
           ELGE  A  L EL  EN G+Y LLSN+YA A RW DVA IR+ +   G++K PGCS I+ 
Sbjct: 669 ELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQG 728

Query: 581 GSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHS 640
                 F VGD+ HP+S+ IY +L ++   ++  G+VP TS  L+D+D+E K   L  HS
Sbjct: 729 KKSTTTFFVGDRSHPESEQIYNLLLDLIKRIKDMGYVPQTSFALHDVDDEEKGDLLFEHS 788

Query: 641 EKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGN 700
           EKLA+AYG+++T PG  IRI KNLR+CG+CHSA   IS I + EI+ RD +RFHHFK G+
Sbjct: 789 EKLAVAYGILTTAPGQPIRIHKNLRICGDCHSALTYISMIIDHEIVLRDSSRFHHFKKGS 848

Query: 701 CSCNDYW 707
           CSC  YW
Sbjct: 849 CSCRSYW 855



 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 191/663 (28%), Positives = 314/663 (47%), Gaps = 90/663 (13%)

Query: 20  SSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNT-QFALSKLIEICAVSPFG 78
           ++ PP       P ++LL +C  + N K  H QI   G      +A+   IE C  S   
Sbjct: 25  TTSPP-----TIPLISLLRQCKTLINAKLAHQQIFVHGFTEMFSYAVGAYIE-CGAS--- 75

Query: 79  DLSYALLVFETIREPNQVI--WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
             + A+ + + +   +  +  WN +IR           + FY +M   G++P+ YTFPF+
Sbjct: 76  --AEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFV 133

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK---SSL 193
           LK+C +I ++  G  +HA V   GL S+ F+  S++ MY + G L+ A  +F++     +
Sbjct: 134 LKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKI 193

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREE-NFVPNESTVVTVLSACAHMGSLELG 252
            D VS+ +++  Y   G    A ++   M         P+  T+V +L ACA + +L+ G
Sbjct: 194 EDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHG 253

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
             V      +GL  ++ V NAL+ MY+KC  + +A  +FE I+K+DV+SWN M+ GY+  
Sbjct: 254 KQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQI 313

Query: 313 SDYK-----------------------------------EALMLFRQMLQSNIEPNDVTF 337
             +                                    EAL +FRQM    +EPN VT 
Sbjct: 314 GSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTL 373

Query: 338 LSVLPACAYLGALDLGKWIHAYIDKNHQKLN------NVSLWTSLIDMYAKCGNIKAAEQ 391
            S+L  CA +GAL  GK  HAY+ KN   LN      ++ +   LIDMYAKC + + A  
Sbjct: 374 ASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARS 433

Query: 392 VFDGM--GYKTLASWNAMISGLAMHGKADKALSLFSRMIGE--GLQPDDITFVGVLSACN 447
           +FD +    K + +W  MI G A HG+A+ AL LF+++  +   L+P+  T    L AC 
Sbjct: 434 IFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACA 493

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
             G L +GRQ     +++   S  L    C++D+  ++G  D A A+   M+++ +   W
Sbjct: 494 RLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLR-NVVSW 552

Query: 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
           TSL+    +HGR E    +   + +L     G   L+  +YA +          + + D+
Sbjct: 553 TSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVV-LYACS---------HSGMVDQ 602

Query: 568 GMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
           GM               H+ + G  + P ++H   M+D    LL ++G + +  E++ +M
Sbjct: 603 GM------------IYFHDMVKGFGITPGAEHYACMVD----LLGRAGRLNEAMELIKNM 646

Query: 628 DEE 630
             E
Sbjct: 647 SME 649



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 121/417 (29%), Positives = 203/417 (48%), Gaps = 21/417 (5%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           +++ +KC+ M    +V   I K  +      +S    +   S  G    AL +F+ ++E 
Sbjct: 276 VSMYAKCSKMNEANKVFEGIKKKDV------VSWNAMVTGYSQIGSFDSALSLFKMMQEE 329

Query: 94  N----QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG 149
           +     + W+ +I G++       A+  + +M L G  PN  T   +L  CA + A+  G
Sbjct: 330 DIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYG 389

Query: 150 KQIHAHVLK--LGL-----ESDPFVHTSLINMYAQNGELESARLVFNKSSLRD--AVSYT 200
           KQ HA+V+K  L L     E D  V   LI+MYA+      AR +F+    +D   V++T
Sbjct: 390 KQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWT 449

Query: 201 ALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL-I 259
            +I GYA  G  +DA +LF ++  ++ +  PN  T+   L ACA +G L LG  + +  +
Sbjct: 450 VMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYAL 509

Query: 260 EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEAL 319
                   L+V N LIDMYSK GD+  AR +F++++ R+V+SW  ++ GY      +EAL
Sbjct: 510 RNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEAL 569

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
            LF QM +     + +TFL VL AC++ G +D G      + K          +  ++D+
Sbjct: 570 HLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDL 629

Query: 380 YAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
             + G +  A ++   M  + T   W A++S   +H   +      S++   G + D
Sbjct: 630 LGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAEND 686



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 150/611 (24%), Positives = 260/611 (42%), Gaps = 129/611 (21%)

Query: 104 GHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI--LKSCAK-ISAISEGKQIHAHVLKLG 160
           G  LS   + ++ FY     S F  +  T P I  L+ C   I+A    +QI  H     
Sbjct: 7   GSYLSRILITSVHFY-----STFTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGF--- 58

Query: 161 LESDPFVHTSLINMYAQNGELESA-----RLVFNKSSLRDAVSYTALITGYASRGYLDDA 215
             ++ F +   +  Y + G    A     RL+ + S++     + ALI      G LDD 
Sbjct: 59  --TEMFSYA--VGAYIECGASAEAVSLLQRLIPSHSTV---FWWNALIRRSVKLGLLDDT 111

Query: 216 RQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALI 275
              + +M  +   ++P+  T   VL AC  + SL  G  V +++  +GLGSN+ + N+++
Sbjct: 112 LGFYCQM--QRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIV 169

Query: 276 DMYSKCGDLVKARDLFESIEKR---DVISWNVMIGGYTHTSDYKEALMLFRQM---LQSN 329
            MY +CG L  A  +F+ + +R   D++SWN ++  Y      + AL +  +M       
Sbjct: 170 AMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLK 229

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           + P+ +T +++LPACA + AL  GK +H +  +N   +++V +  +L+ MYAKC  +  A
Sbjct: 230 LRPDAITLVNILPACASVFALQHGKQVHGFSVRN-GLVDDVFVGNALVSMYAKCSKMNEA 288

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE------------------- 430
            +VF+G+  K + SWNAM++G +  G  D ALSLF  M  E                   
Sbjct: 289 NKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQK 348

Query: 431 ----------------GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY------KI 468
                           GL+P+ +T   +LS C   G L  G+Q    +I++         
Sbjct: 349 GHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDK 408

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK-PDAAIWTSLLG--------------- 512
              L     ++D+  +   +  A ++  ++E K  +   WT ++G               
Sbjct: 409 EDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLF 468

Query: 513 ----------------------ACRVHGRLELGESVAKHLLELEPENPGAYV--LLSNMY 548
                                 AC   G L LG  +  + L  E E+   YV   L +MY
Sbjct: 469 AQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMY 528

Query: 549 AGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEID 608
           + +G   D+   R   ++  ++ V   +S+         + G  +H + +    + D+  
Sbjct: 529 SKSG---DIDAARAVFDNMKLRNVVSWTSL---------MTGYGMHGRGEEALHLFDQ-- 574

Query: 609 ALLEKSGFVPD 619
             ++K GF  D
Sbjct: 575 --MQKLGFAVD 583


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 287/700 (41%), Positives = 414/700 (59%), Gaps = 23/700 (3%)

Query: 10  LSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLI 69
           + P    FPP                +L  C ++ + +++H  ++K G  +  +  + LI
Sbjct: 146 VRPDFYTFPP----------------VLKACLSLADGEKMHCWVLKMGFEHDVYVAASLI 189

Query: 70  EICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPN 129
            +   S FG +  A  VF  +   +   WN +I G   + +   A++   RM       +
Sbjct: 190 HL--YSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMD 247

Query: 130 TYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN 189
           T T   +L  CA+ + +  G  +H +V+K GLESD FV  +LINMY++ G L+ A+ VF+
Sbjct: 248 TVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFD 307

Query: 190 KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL 249
              +RD VS+ ++I  Y        A   F EM        P+  TVV++ S    +   
Sbjct: 308 GMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLF--VGMRPDLLTVVSLASIFGQLSDR 365

Query: 250 ELGNWVCS-LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGG 308
            +G  V   ++    L  ++ + NAL++MY+K G +  AR +FE +  RDVISWN +I G
Sbjct: 366 RIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITG 425

Query: 309 YTHTSDYKEALMLFRQMLQS-NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
           Y       EA+  +  M +   I PN  T++S+LPA +++GAL  G  IH  + KN   L
Sbjct: 426 YAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFL 485

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
           + V + T LIDMY KCG ++ A  +F  +  +T   WNA+IS L +HG  +KAL LF  M
Sbjct: 486 D-VFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDM 544

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
             +G++ D ITFV +LSAC+H+GL+D  +  F+ M ++Y+I P L+HYGCMVDL GRAG 
Sbjct: 545 RADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGY 604

Query: 488 FDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547
            ++A  L+  M ++ DA+IW +LL ACR+HG  ELG   +  LLE++ EN G YVLLSN+
Sbjct: 605 LEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNI 664

Query: 548 YAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEI 607
           YA  G+W+    +R+   D+G++K PG SS+ VGSVV  F  G++ HPQ   IYE L  +
Sbjct: 665 YANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVGSVVEVFYAGNQSHPQCAEIYEELRVL 724

Query: 608 DALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVC 667
           +A ++  G+VPD S VL D++E+ KE  L+ HSE+LAI +G+IST P + IRI KNLRVC
Sbjct: 725 NAKMKSLGYVPDYSFVLQDVEEDEKEEILTSHSERLAIVFGIISTPPKSPIRIFKNLRVC 784

Query: 668 GNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           G+CH+ATK ISKI  REII RD NRFHHFKDG CSC DYW
Sbjct: 785 GDCHNATKYISKITEREIIVRDSNRFHHFKDGICSCGDYW 824



 Score =  238 bits (606), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 157/537 (29%), Positives = 279/537 (51%), Gaps = 27/537 (5%)

Query: 3   LPPSSLT-----LSPSILHFPPSS-------DPPYKLLQNQPSLA----LLSKCTNMQNI 46
           LPP +         P I HF  SS       DP  K  +N   +     +   CTN+   
Sbjct: 8   LPPRNFKPILQLQQPCIYHFFSSSLQHKISHDPDNKNNKNNNVVVDFNLVFRSCTNINVA 67

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           KQ+H+ ++  G       L++L+ + A    GDLS +   F+ I+  N   WN+++  + 
Sbjct: 68  KQLHALLLVLGKAQDVVLLTQLVTLYAT--LGDLSLSSTTFKHIQRKNIFSWNSMVSAYV 125

Query: 107 LSSSPVVAIKFYVRMI-LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
                  ++     ++ LSG  P+ YTFP +LK+C    ++++G+++H  VLK+G E D 
Sbjct: 126 RRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACL---SLADGEKMHCWVLKMGFEHDV 182

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           +V  SLI++Y++ G +E A  VF    +RD  S+ A+I+G+   G + +A ++ D M   
Sbjct: 183 YVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTE 242

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
           E     +  TV ++L  CA    +  G  V   +  HGL S++ V+NALI+MYSK G L 
Sbjct: 243 EVKM--DTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQ 300

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
            A+ +F+ +E RD++SWN +I  Y    D   AL  F++ML   + P+ +T +S+     
Sbjct: 301 DAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFG 360

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
            L    +G+ +H ++ +      ++ +  +L++MYAK G+I  A  VF+ +  + + SWN
Sbjct: 361 QLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWN 420

Query: 406 AMISGLAMHGKADKALSLFSRM-IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
            +I+G A +G A +A+  ++ M  G  + P+  T+V +L A +H G L  G +    +I+
Sbjct: 421 TLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIK 480

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
           +  +   +    C++D+ G+ G  ++A +L   +  +     W +++ +  +HG  E
Sbjct: 481 NC-LFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVP-WNAIISSLGIHGHGE 535


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 270/673 (40%), Positives = 407/673 (60%), Gaps = 41/673 (6%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ 95
           +L +  +++ +K VHS++     H       KL+   A +  G+   A  VF+ I E N 
Sbjct: 41  VLDQYPDIKTLKNVHSKVFNLSFHENPSLGIKLMR--AYAARGEPGLARNVFDVIPERNV 98

Query: 96  VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAH 155
           + +N +IR +  +     A+  +  M+  GF P+ YT+P +LK+C+    +  G Q+H  
Sbjct: 99  IFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGA 158

Query: 156 VLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDA 215
           V K+GL+ + FV   LI +Y + G L  AR V ++   +D VS+ +++ GYA     DDA
Sbjct: 159 VFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDA 218

Query: 216 RQLFDEMP-IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274
             +  EM  +R++   P+  T+ ++L A                           VTN  
Sbjct: 219 LDICREMDGVRQK---PDACTMASLLPA---------------------------VTN-- 246

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
               +   +++   ++F ++EK+ ++SWNVMI  Y   S   +++ L+ QM +  +EP+ 
Sbjct: 247 ----TSSENVLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDA 302

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           +T  SVL AC  L AL LG+ IH Y+++  +   N+ L  SLIDMYA+CG ++ A++VFD
Sbjct: 303 ITCASVLRACGDLSALLLGRRIHEYVERK-KLCPNMLLENSLIDMYARCGCLEDAKRVFD 361

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
            M ++ +ASW ++IS   M G+   A++LF+ M   G  PD I FV +LSAC+H+GLL+ 
Sbjct: 362 RMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNE 421

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
           G+ YF  M  DYKI+P ++H+ C+VDLLGR+G  DEA  ++K M MKP+  +W +LL +C
Sbjct: 422 GKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSC 481

Query: 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPG 574
           RV+  +++G   A  LL+L PE  G YVLLSN+YA AGRW +V  IR+ +  + ++K+PG
Sbjct: 482 RVYSNMDIGILAADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPG 541

Query: 575 CSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEG 634
            S++E+ + VH FL GD  HPQSK IYE L  +   +++ G+VP T   L+D++EE KE 
Sbjct: 542 ISNVELNNQVHTFLAGDTYHPQSKEIYEELSVLVGKMKELGYVPKTDSALHDVEEEDKEC 601

Query: 635 ALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFH 694
            L+ HSEKLAI + +++T+  + IRI KNLRVCG+CH A KLISKI  REI+ RD NRFH
Sbjct: 602 HLAVHSEKLAIVFAILNTQE-SPIRITKNLRVCGDCHIAAKLISKIVQREIVIRDTNRFH 660

Query: 695 HFKDGNCSCNDYW 707
           HFKDG CSC DYW
Sbjct: 661 HFKDGICSCGDYW 673


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 277/677 (40%), Positives = 410/677 (60%), Gaps = 10/677 (1%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +++ CT  +++   ++VH+ +++TG     F  + L+++   S  GD+  A LVF  + +
Sbjct: 208 VVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDM--YSKLGDIHMAALVFGKVPK 265

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG--K 150
            + V WN  I G  L      A++  ++M  SG VPN +T   ILK+CA   A +    +
Sbjct: 266 TDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGR 325

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           QIH  ++K   +SD ++  +L++MYA+ G L+ AR VF     +D + + ALI+G +  G
Sbjct: 326 QIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGG 385

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
              ++  LF  M  R+E    N +T+  VL + A + ++     V +L E  G  S+ HV
Sbjct: 386 CHGESLSLFCRM--RKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHV 443

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            N LID Y KC  L  A  +FE     ++I++  MI   +     ++A+ LF +ML+  +
Sbjct: 444 VNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGL 503

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           EP+     S+L ACA L A + GK +HA++ K  + + +V    +L+  YAKCG+I+ A+
Sbjct: 504 EPDPFVLSSLLNACASLSAYEQGKQVHAHLIKR-KFMTDVFAGNALVYTYAKCGSIEDAD 562

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
             F G+  K + SW+AMI GLA HG   +AL +F RM+ E + P+ IT   VL ACNHAG
Sbjct: 563 LAFSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAG 622

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L+D  + YF++M + + I    +HY CM+DLLGRAG  D+A  L+ +M  + +AA+W +L
Sbjct: 623 LVDEAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGAL 682

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           L A RVH   ELG+  A+ L  LEPE  G +VLL+N YA AG WD+VA +R  + D  +K
Sbjct: 683 LAASRVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVK 742

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           K P  S +E+   VH F+VGDK HP+++ IY  L+E+  L+ K+G+VP+    L+D+D+ 
Sbjct: 743 KEPAMSWVELKDRVHTFIVGDKSHPRARDIYAKLEELGDLMSKAGYVPNLEVDLHDVDKS 802

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KE  LSHHSE+LA+A+ LIST  G  IR+ KNLR+C +CH A K ISKI +REII RD 
Sbjct: 803 EKELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDI 862

Query: 691 NRFHHFKDGNCSCNDYW 707
           NRFHHF DG CSC DYW
Sbjct: 863 NRFHHFSDGACSCGDYW 879



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 170/576 (29%), Positives = 270/576 (46%), Gaps = 54/576 (9%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGL-HNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           LL++    Q++     +H+ ++K+GL H  +  L      C +        A  VF+   
Sbjct: 10  LLTRYAATQSLFLGAHIHAHLLKSGLLHAFRNHLLSFYSKCRLP-----GSARRVFDETP 64

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           +P  V W++++  +S ++ P  A+  +  M   G   N +  P +LK CA  + +  G Q
Sbjct: 65  DPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLK-CAPDAGL--GVQ 121

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL-RDAVSYTALITGYASRG 210
           +HA  +  GL  D FV  +L+ MY   G ++ AR VF++++  R+AVS+  +++ +    
Sbjct: 122 VHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKND 181

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
              DA +LF EM        PNE     V++AC     LE G  V +++   G   ++  
Sbjct: 182 RCSDAVELFGEMVW--SGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFT 239

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            NAL+DMYSK GD+  A  +F  + K DV+SWN  I G       + AL L  QM  S +
Sbjct: 240 ANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGL 299

Query: 331 EPNDVTFLSVLP--ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            PN  T  S+L   A A  GA  LG+ IH ++ K     ++  +  +L+DMYAK G +  
Sbjct: 300 VPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDY-IGVALVDMYAKYGLLDD 358

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN- 447
           A +VF+ +  K L  WNA+ISG +  G   ++LSLF RM  EG   +  T   VL +   
Sbjct: 359 ARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTAS 418

Query: 448 ----------HA---------------GLLDI-----GRQYFNAMIQDYKISPKLQHYGC 477
                     HA               GL+D        +Y N + +++  S  +  +  
Sbjct: 419 LEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHS-SDNIIAFTS 477

Query: 478 MVDLLGRAGLFDEAEALLKTM---EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534
           M+  L +    ++A  L   M    ++PD  + +SLL AC      E G+ V  HL++ +
Sbjct: 478 MITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRK 537

Query: 535 -PENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
              +  A   L   YA  G  +D     + L DKG+
Sbjct: 538 FMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGV 573



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 130/287 (45%), Gaps = 13/287 (4%)

Query: 235 TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL--HVTNALIDMYSKCGDLVKARDLFE 292
           ++  +L+  A   SL LG    + I  H L S L     N L+  YSKC     AR +F+
Sbjct: 6   SISPLLTRYAATQSLFLG----AHIHAHLLKSGLLHAFRNHLLSFYSKCRLPGSARRVFD 61

Query: 293 SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL 352
                  +SW+ ++  Y++ +  +EAL  FR M    +  N+     VL      G   L
Sbjct: 62  ETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAG---L 118

Query: 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-KTLASWNAMISGL 411
           G  +HA +  +     ++ +  +L+ MY   G +  A +VFD     +   SWN M+S  
Sbjct: 119 GVQVHA-VAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAF 177

Query: 412 AMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK 471
             + +   A+ LF  M+  G++P++  F  V++AC  +  L+ GR+  +AM+        
Sbjct: 178 VKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRK-VHAMVVRTGYDKD 236

Query: 472 LQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           +     +VD+  + G    A AL+     K D   W + +  C +HG
Sbjct: 237 VFTANALVDMYSKLGDIHMA-ALVFGKVPKTDVVSWNAFISGCVLHG 282


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 273/695 (39%), Positives = 407/695 (58%), Gaps = 67/695 (9%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G+L  A  VF+ I +P+ V W  +I G++       A+  ++RM+ SG  P  +TF  +L
Sbjct: 93  GNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVL 152

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA- 196
            SCA   A+  GK++H+ V+KLG      V  SL+NMYA+ G+   A++VF++  L+D  
Sbjct: 153 ASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTS 212

Query: 197 ------------------------------VSYTALITGYASRGYLDDARQLFDEMPIRE 226
                                         VS+ ++ITGY  +GY   A + F  M ++ 
Sbjct: 213 TWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFM-LKS 271

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG---- 282
            +  P++ T+ +VLSACA+  SL+LG  + + I    +     V NALI MY+K G    
Sbjct: 272 SSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEV 331

Query: 283 -----------------------------DLVKARDLFESIEKRDVISWNVMIGGYTHTS 313
                                        D+  AR +F+S++ RDV++W  MI GY    
Sbjct: 332 AHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNG 391

Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
              +AL+LFR M++   +PN+ T  +VL   + L +LD GK +HA +    +++++VS+ 
Sbjct: 392 LISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHA-VAIRLEEVSSVSVG 450

Query: 374 TSLIDMYAKCGNIKAAEQVFDGM-GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
            +LI MY++ G+IK A ++F+ +  Y+   +W +MI  LA HG  ++A+ LF +M+   L
Sbjct: 451 NALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINL 510

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
           +PD IT+VGVLSAC H GL++ G+ YFN M   + I P   HY CM+DLLGRAGL +EA 
Sbjct: 511 KPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAY 570

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552
             ++ M ++PD   W SLL +CRVH  ++L +  A+ LL ++P N GAY+ L+N  +  G
Sbjct: 571 NFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACG 630

Query: 553 RWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE 612
           +W+D A +R  + DK +KK  G S +++ + VH F V D +HPQ   IY M+ +I   ++
Sbjct: 631 KWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIK 690

Query: 613 KSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHS 672
           K GF+PDT+ VL+D+++E KE  L HHSEKLAIA+ LI+T   TT+RI+KNLRVC +CHS
Sbjct: 691 KMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFALINTPKHTTVRIMKNLRVCNDCHS 750

Query: 673 ATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           A + IS +  REII RD  RFHHFKDG+CSC DYW
Sbjct: 751 AIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW 785



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 149/535 (27%), Positives = 235/535 (43%), Gaps = 132/535 (24%)

Query: 149 GKQIHAHVLKLGLES-DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA 207
           G+ IHA ++K GL     F+  +L+N+Y + G    A  +F++  L+   S+  +++ +A
Sbjct: 31  GRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHA 90

Query: 208 SRGYLDDARQLFDEMP-----------------------------IREENFVPNESTVVT 238
             G LD AR++FDE+P                             +      P + T   
Sbjct: 91  KAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTN 150

Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR---------- 288
           VL++CA   +L++G  V S +   G    + V N+L++MY+KCGD V A+          
Sbjct: 151 VLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKD 210

Query: 289 ---------------------DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
                                 LF+ +   D++SWN +I GY H      AL  F  ML+
Sbjct: 211 TSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLK 270

Query: 328 -SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI-------------------------D 361
            S+++P+  T  SVL ACA   +L LGK IHA+I                         +
Sbjct: 271 SSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVE 330

Query: 362 KNHQKLN-------NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMH 414
             H+ +        NV  +TSL+D Y K G+I  A  +FD + ++ + +W AMI G A +
Sbjct: 331 VAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQN 390

Query: 415 GKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF--------------- 459
           G    AL LF  MI EG +P++ T   VLS  +    LD G+Q                 
Sbjct: 391 GLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVG 450

Query: 460 NAMIQDY------KISPKLQHYGC----------MVDLLGRAGLFDEAEALLKTM---EM 500
           NA+I  Y      K + K+ ++ C          M+  L + GL +EA  L + M    +
Sbjct: 451 NALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINL 510

Query: 501 KPDAAIWTSLLGACRVHGRLELGES---VAKHLLELEPENPGAYVLLSNMYAGAG 552
           KPD   +  +L AC   G +E G+S   + K++  +EP +   Y  + ++   AG
Sbjct: 511 KPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTS-SHYACMIDLLGRAG 564



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/400 (28%), Positives = 174/400 (43%), Gaps = 91/400 (22%)

Query: 155 HVLKLGLES-DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
           H+L+  ++S DPF+           G    AR++ +            L+  Y   G   
Sbjct: 17  HLLQSAIKSRDPFI-----------GRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSS 65

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           DA +LFDEMP++            T  S            W                 N 
Sbjct: 66  DAHRLFDEMPLK------------TTFS------------W-----------------NT 84

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           ++  ++K G+L  AR +F+ I + D +SW  MI GY H   +K A+  F +M+ S I P 
Sbjct: 85  ILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPT 144

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
             TF +VL +CA   ALD+GK +H+++ K  Q    V +  SL++MYAKCG+   A+ VF
Sbjct: 145 QFTFTNVLASCAAAQALDVGKKVHSFVVKLGQS-GVVPVANSLLNMYAKCGDSVMAKVVF 203

Query: 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLD 453
           D M  K  ++WN MIS      + D AL+LF +M      PD +++  +++   H G   
Sbjct: 204 DRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMT----DPDIVSWNSIITGYCHQGYDI 259

Query: 454 IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
              + F+ M                                LK+  +KPD     S+L A
Sbjct: 260 RALETFSFM--------------------------------LKSSSLKPDKFTLGSVLSA 287

Query: 514 CRVHGRLELGESVAKHLLELEPENPGAY-VLLSNMYAGAG 552
           C     L+LG+ +  H++  + +  GA    L +MYA +G
Sbjct: 288 CANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSG 327


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 236/502 (47%), Positives = 341/502 (67%), Gaps = 4/502 (0%)

Query: 209 RGYLDDARQL---FDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           R Y D  + L   F    + +    P+ ST  TVL + A +   ELG  +   I   G  
Sbjct: 115 RCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQMGFE 174

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
           SN++V+ AL++MY  C  +  AR +F+ I  R+++SWN +I GY H   +++ + +FR+M
Sbjct: 175 SNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREM 234

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
             +  +P +VT + VL ACA+LGAL+ G+WI  YID N  +LN V + T+LIDMYAKCG 
Sbjct: 235 QIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLN-VFVGTALIDMYAKCGV 293

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           +  AE++F  M  K + +WN +ISG AM+G+ + AL  FSRMI E  +PD++TF+GVL A
Sbjct: 294 VDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCA 353

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           C H GL++ GR YF +M +++ + P+++HYGCMVDLLGRAG  DEA+ L++ M M+PD  
Sbjct: 354 CCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPI 413

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
           IW  LLGACR+HG ++LGE   K LLELEP N   YVLL+N+YA   RWD V  +R  ++
Sbjct: 414 IWRELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEVREMMD 473

Query: 566 DKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLY 625
            + ++KVPGCSSIE+ +VV+EF+V + + P  + +Y++L +++  L+ +G+V DT    Y
Sbjct: 474 CRRVRKVPGCSSIEIDNVVYEFVVSNYIKPGFEEVYKLLADMNKKLKLAGYVADTGMASY 533

Query: 626 DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREI 685
           D++EE KE +L +HSEKLA+A+GL+ +  G T+RIVKNLR+C +CH   K++SK++ R+I
Sbjct: 534 DIEEEEKEHSLMYHSEKLALAFGLLKSPSGLTLRIVKNLRICQDCHGFFKIVSKVYRRDI 593

Query: 686 IARDRNRFHHFKDGNCSCNDYW 707
             RDRNRFHHF  G CSC DYW
Sbjct: 594 SVRDRNRFHHFVGGACSCKDYW 615



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 127/408 (31%), Positives = 213/408 (52%), Gaps = 10/408 (2%)

Query: 15  LHFPPSSDPPYKLLQNQPSLA------LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKL 68
           L   PSS     L +N P +       L    +N  ++ Q+ SQ+I   +      L KL
Sbjct: 22  LTIRPSSTSALTLCENPPQITESKHSHLTKSISNHAHMNQMLSQMIMNYIPIDHLNLMKL 81

Query: 69  IEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVP 128
           I+  +VS  G  + ALL  +     +  + N++IR ++ S+  + ++  Y +M  +G  P
Sbjct: 82  IDF-SVSSHGFAASALLFTQFYGFIDSDLCNSMIRCYTDSNKHLHSVFIYTQMWKNGIFP 140

Query: 129 NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF 188
           ++ TFP +LKS A++     GK IH  ++++G ES+ +V T+L+NMY     +  AR VF
Sbjct: 141 DSSTFPTVLKSVAQLCRQELGKAIHCCIIQMGFESNVYVSTALVNMYGTCSSVSDARQVF 200

Query: 189 NKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS 248
           ++   R+ VS+ ALITGY           +F EM I      P E T+V VL ACAH+G+
Sbjct: 201 DEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAK--PVEVTMVGVLLACAHLGA 258

Query: 249 LELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGG 308
           L  G W+   I+ + L  N+ V  ALIDMY+KCG + +A  +F+++  ++V +WNV+I G
Sbjct: 259 LNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISG 318

Query: 309 YTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN 368
           Y      + AL  F +M+    +P++VTFL VL AC + G ++ G+     + +      
Sbjct: 319 YAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRP 378

Query: 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHG 415
            +  +  ++D+  + G +  A+Q+   M  +     W  ++    +HG
Sbjct: 379 RIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGACRIHG 426


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 234/486 (48%), Positives = 337/486 (69%), Gaps = 5/486 (1%)

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC---- 281
           E   +PN+ T   VL ACA +G+L LG  V   +   G G  ++V N L+ MY  C    
Sbjct: 3   ERKKLPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGE 62

Query: 282 GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
           G +  AR +F+ + K D +SW+ MIGGY       +A+ LFR+M    + P+++T +SVL
Sbjct: 63  GGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVL 122

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
            AC  LGAL+LGKW+ +Y++K   +  NV L  +LIDM+AKCG++  A  +F  M  + +
Sbjct: 123 SACTGLGALELGKWVESYVEKERVQ-KNVELSNALIDMFAKCGDVDKATNLFRSMRERNI 181

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
            SW ++I GLAMHG+  +A+++F  M+  G+ PDD+ F+G+LSAC+H+GL+D G++YF++
Sbjct: 182 VSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDS 241

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
           M +D+ I PK++HYGCMVD+L RAGL  EA   ++ M + P+  +W +L+ ACR HG L+
Sbjct: 242 MRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELK 301

Query: 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
           LGE + + L+  EP +   YVLLSN+YA    W+    IR  ++ KGMKK+PG + IE+ 
Sbjct: 302 LGEKITRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIELD 361

Query: 582 SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
           + ++EF+ GDK H QSK IYEM+DE+   ++++G++P T+EVL D+D+E KE  L+ HSE
Sbjct: 362 NEIYEFVAGDKSHAQSKEIYEMVDEMGKEMKRAGYMPTTTEVLLDIDDEDKEDTLNRHSE 421

Query: 642 KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
           KLAIA+ L++T PGT IRIVKNLRVC +CHSA+K ISKI+NREI+ RDRNRFHHFK+G C
Sbjct: 422 KLAIAFALLNTPPGTLIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHFKNGLC 481

Query: 702 SCNDYW 707
           SC D+W
Sbjct: 482 SCRDFW 487



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 108/295 (36%), Positives = 174/295 (58%), Gaps = 7/295 (2%)

Query: 127 VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMY----AQNGELE 182
           +PN +T+PF+LK+CA I  ++ GK +H  V+K G   +  V  +L++MY       G +E
Sbjct: 7   LPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIE 66

Query: 183 SARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSA 242
            AR VF++    D+VS++A+I GY   G   DA  LF EM I+     P+E T+V+VLSA
Sbjct: 67  FARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIK--GVCPDEITMVSVLSA 124

Query: 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
           C  +G+LELG WV S +E   +  N+ ++NALIDM++KCGD+ KA +LF S+ +R+++SW
Sbjct: 125 CTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSW 184

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
             +IGG        EA+ +F +M++S + P+DV F+ +L AC++ G +D GK     + K
Sbjct: 185 TSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRK 244

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGK 416
           +   +  +  +  ++DM  + G +K A +    M        W  +I+    HG+
Sbjct: 245 DFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGE 299



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 111/199 (55%), Gaps = 7/199 (3%)

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC- 383
           ML+    PN  T+  VL ACA +G L+LGK +H  + K     + V++  +L+ MY  C 
Sbjct: 1   MLERKKLPNKFTYPFVLKACAGIGNLNLGKSVHGSVMK-FGFGDEVNVQNTLVHMYCCCR 59

Query: 384 ---GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFV 440
              G I+ A +VFD M      SW+AMI G    G++  A++LF  M  +G+ PD+IT V
Sbjct: 60  GGEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMV 119

Query: 441 GVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEM 500
            VLSAC   G L++G+ +  + ++  ++   ++    ++D+  + G  D+A  L ++M  
Sbjct: 120 SVLSACTGLGALELGK-WVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRE 178

Query: 501 KPDAAIWTSLLGACRVHGR 519
           + +   WTS++G   +HGR
Sbjct: 179 R-NIVSWTSVIGGLAMHGR 196



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 170/372 (45%), Gaps = 44/372 (11%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEI--CAVSPFGDLSYALLVFETI 90
           +L  C  + N+   K VH  ++K G  +     + L+ +  C     G + +A  VF+ +
Sbjct: 16  VLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEFARKVFDEM 75

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            + + V W+ +I G+        AI  +  M + G  P+  T   +L +C  + A+  GK
Sbjct: 76  YKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGLGALELGK 135

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            + ++V K  ++ +  +  +LI+M+A+ G+++ A  +F     R+ VS+T++I G A  G
Sbjct: 136 WVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHG 195

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN-WVCSLIEGHGLGSNLH 269
              +A  +F+EM        P++   + +LSAC+H G ++ G  +  S+ +   +   + 
Sbjct: 196 RGVEAVAVFEEMV--RSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIE 253

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
               ++DM  + G LV                              KEAL   ++M    
Sbjct: 254 HYGCMVDMLCRAG-LV------------------------------KEALKFVQEM---P 279

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           I+PN V + +++ AC   G L LG+ I   + +N     + S +  L ++YAK  + +  
Sbjct: 280 IDPNPVVWRTLINACRAHGELKLGEKITRQLIRNEPM--HESNYVLLSNIYAKMSDWEKK 337

Query: 390 EQVFDGMGYKTL 401
            ++ + M  K +
Sbjct: 338 TRIREAMDMKGM 349


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 274/675 (40%), Positives = 401/675 (59%), Gaps = 6/675 (0%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L + ++  ++Q   ++H   +K GL       + L+++   S  G L+ A ++F+     
Sbjct: 141 LPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDM--YSKCGYLTEAQMLFDKNNRK 198

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVP-NTYTFPFILKSCAKISAISEGKQI 152
           N V WN +I G         A   +  M +   +  N  T   IL +C +IS +   K++
Sbjct: 199 NAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKEL 258

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H + ++ G + D  V    +  YA+ G L  A  VF     +   S+ ALI G A  G  
Sbjct: 259 HGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDP 318

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
             A  L+ +M       VP+  T+ ++L A AH+ SL  G  V   +  HGL  +  +  
Sbjct: 319 RKALNLYIQMTY--SGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGI 376

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           +L+ +Y  CG+   AR LF+ +E++  +SWN MI GY+     ++AL+LFR+++    +P
Sbjct: 377 SLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQP 436

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           +D+  +SVL AC+   AL LGK  H Y  K    + +V +  S IDMYAK G IK +  V
Sbjct: 437 SDIAVVSVLGACSQQSALRLGKETHCYALKA-LLMEDVFVACSTIDMYAKSGCIKESRSV 495

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           FDG+  K LASWNA+I+   +HG  ++++ LF RM   G  PD  TF+G+L+ C+HAGL+
Sbjct: 496 FDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLV 555

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           + G +YFN M   + I PKL+HY C++D+LGRAG  D+A  L+  M  +PD+ +W+SLL 
Sbjct: 556 EEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLS 615

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
            CR  G LE+G+ VA+ LLELEP+N   YV LSN+YAG+GRWDDV  +R  + D G++K 
Sbjct: 616 FCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKD 675

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
            GCS IE+G  VH F+ GD + PQSK +     +++  + K G+ P+TS VL+D+DEE K
Sbjct: 676 AGCSWIELGGKVHSFVAGDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTSAVLHDVDEEKK 735

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
              L  HSEKLAI +GL++T  GTT+RI KNLR+C +CH+A+K +S++  REII RD  R
Sbjct: 736 IEKLRGHSEKLAICFGLLNTTKGTTLRIFKNLRICVDCHNASKFMSEVTGREIIIRDNKR 795

Query: 693 FHHFKDGNCSCNDYW 707
           FHHFKDG CSC DYW
Sbjct: 796 FHHFKDGLCSCGDYW 810



 Score =  248 bits (633), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 161/490 (32%), Positives = 261/490 (53%), Gaps = 20/490 (4%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           +H  +IK GL    F  + LI +     FG +  A+ VF  +   N V WN+II G S +
Sbjct: 53  IHGMVIKMGLLLDVFVGNALIAM--YGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSEN 110

Query: 109 SSPVVAIKFYVRMIL--SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
                     V M+    G +P+  T   +L  CA+   +  G +IH   +KLGL  D  
Sbjct: 111 GFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVR 170

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V+ SL++MY++ G L  A+++F+K++ ++AVS+  +I G  ++GY+ +A  LF EM ++E
Sbjct: 171 VNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQE 230

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           +  V NE TV+ +L AC  +  L     +      HG   +  V N  +  Y+KCG L+ 
Sbjct: 231 DIEV-NEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLIC 289

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A  +F S+E + V SWN +IGG     D ++AL L+ QM  S + P+  T  S+L A A+
Sbjct: 290 AERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAH 349

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
           L +L  GK +H ++ ++  ++++  +  SL+ +Y  CG   +A  +FDGM  K+  SWNA
Sbjct: 350 LKSLRYGKEVHGFVLRHGLEIDSF-IGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNA 408

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
           MISG + +G  + AL LF +++ +G QP DI  V VL AC+    L +G++        Y
Sbjct: 409 MISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKE-----THCY 463

Query: 467 KISPKLQH---YGC-MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG---- 518
            +   L       C  +D+  ++G   E+ ++   ++ K D A W +++ A  VHG    
Sbjct: 464 ALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNK-DLASWNAIIAAYGVHGDGEE 522

Query: 519 RLELGESVAK 528
            +EL E + K
Sbjct: 523 SIELFERMRK 532



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 156/497 (31%), Positives = 251/497 (50%), Gaps = 47/497 (9%)

Query: 114 AIKFYVRMIL-SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLI 172
           AI  +V++I  + F  + +TFP ++K+C        G+ IH  V+K+GL  D FV  +LI
Sbjct: 14  AIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALI 73

Query: 173 NMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPN 232
            MY + G +++A  VF+   +R+ VS+ ++I+G++  G+  D   +  EM   EE  +P+
Sbjct: 74  AMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPD 133

Query: 233 ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFE 292
            +T+VTVL  CA    +++G  +  L    GL  ++ V N+L+DMYSKCG L +A+ LF+
Sbjct: 134 IATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFD 193

Query: 293 SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM-LQSNIEPNDVTFLSVLPACAYLGALD 351
              +++ +SWN MIGG        EA  LFR+M +Q +IE N+VT L++LPAC  +  L 
Sbjct: 194 KNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLR 253

Query: 352 LGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGL 411
             K +H Y  ++  + + + +    +  YAKCG +  AE+VF  M  KT+ SWNA+I G 
Sbjct: 254 SLKELHGYSIRHGFQYDEL-VANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGC 312

Query: 412 AMHGKADKALSLFSRMIGEGLQPDDIT--------------------------------- 438
           A +G   KAL+L+ +M   GL PD  T                                 
Sbjct: 313 AQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDS 372

Query: 439 FVGV--LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
           F+G+  LS   H G     R  F+ M +   +S     +  M+    + GL ++A  L +
Sbjct: 373 FIGISLLSLYIHCGESSSARLLFDGMEEKSSVS-----WNAMISGYSQNGLPEDALILFR 427

Query: 497 TM---EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE-LEPENPGAYVLLSNMYAGAG 552
            +     +P      S+LGAC     L LG+    + L+ L  E+        +MYA +G
Sbjct: 428 KLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSG 487

Query: 553 RWDDVATIRTRLNDKGM 569
              +  ++   L +K +
Sbjct: 488 CIKESRSVFDGLKNKDL 504


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 254/676 (37%), Positives = 410/676 (60%), Gaps = 8/676 (1%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           +LL+ C ++ ++   KQ+HS ++K G+         L+++      G +  AL +F++  
Sbjct: 249 SLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDL--YVKCGVIVEALEIFKSGD 306

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             N V+WN ++  +   S    +   + +M+ +G  PN +T+P +L++C     I+ G+Q
Sbjct: 307 RTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQ 366

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IH   +K G ESD +V   LI+MY++ G L+ AR +      +D VS+T++I GY    +
Sbjct: 367 IHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEF 426

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
             +A + F +M +      P+   + + +SACA + ++  G  + S +   G  +++ + 
Sbjct: 427 CKEALETFKDMQLF--GIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIW 484

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           NAL+++Y++CG   +A  LFE+IE +D I+WN M+ G+  +  Y+EAL +F +M Q+ ++
Sbjct: 485 NALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVK 544

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
            N  TF+S + A A L  +  GK IHA + K     +   +  +LI +Y KCG+I+ A+ 
Sbjct: 545 YNVFTFVSSISASANLADIKQGKQIHATVIKTGCT-SETEVANALISLYGKCGSIEDAKM 603

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
            F  M  +   SWN +I+  + HG   +AL LF +M  EGL+P+D+TF+GVL+AC+H GL
Sbjct: 604 QFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGL 663

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           ++ G  YF +M  ++ I P+  HY C+VD+LGRAG  D A   ++ M +  +A +W +LL
Sbjct: 664 VEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLL 723

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
            ACRVH  +E+GE  AK+LLELEP +  +YVLLSN YA  G+W     +R  + D+G++K
Sbjct: 724 SACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRK 783

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
            PG S IEV +VVH F VGD++HP +  IY+ L ++D  L K G++     + ++ ++E 
Sbjct: 784 EPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADLDDRLAKIGYIQGNYFLFHEKEKEQ 843

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           K+     HSEKLA+A+GL+S  P   +R++KNLRVC +CH+  K  S++  REI+ RD  
Sbjct: 844 KDPTAFVHSEKLAVAFGLMSLPPSMPLRVIKNLRVCNDCHTWMKFTSEVMGREIVLRDVY 903

Query: 692 RFHHFKDGNCSCNDYW 707
           RFHHF +GNCSC D+W
Sbjct: 904 RFHHFNNGNCSCGDFW 919



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 138/463 (29%), Positives = 244/463 (52%), Gaps = 7/463 (1%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           +H++ I  GL   + A + LI++ A    G +  A  VFE +   + V W  ++ G++ +
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDLYAKK--GLVQRARRVFEQLSARDNVSWVAMLSGYARN 121

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVH 168
                A+  Y +M  SG VP  Y    +L +C K +   +G+ +HA V K G  S+  V 
Sbjct: 122 GLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVG 181

Query: 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
            +LI +Y + G L  A  VF++    D V++  LI+ +A  G  + A ++F+EM  R   
Sbjct: 182 NALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEM--RLSG 239

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288
           + P+  T+ ++L+ACA +G L  G  + S +   G+  +  +  +L+D+Y KCG +V+A 
Sbjct: 240 WTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEAL 299

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
           ++F+S ++ +V+ WN+M+  Y   SD  ++  LF QM+ + + PN+ T+  +L  C Y G
Sbjct: 300 EIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAG 359

Query: 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI 408
            ++LG+ IH    K   + +++ +   LIDMY+K G +  A ++ + +  K + SW +MI
Sbjct: 360 EINLGEQIHLLSIKTGFE-SDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMI 418

Query: 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
           +G   H    +AL  F  M   G+ PD+I     +SAC     +  G+Q  ++ +     
Sbjct: 419 AGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQ-IHSRVYVSGY 477

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           S  +  +  +V+L  R G   EA +L + +E K D   W  ++
Sbjct: 478 SADVSIWNALVNLYARCGRSKEAFSLFEAIEHK-DKITWNGMV 519



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 111/283 (39%), Gaps = 43/283 (15%)

Query: 25  YKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYAL 84
           Y +     S++  +   +++  KQ+H+ +IKTG  +     + LI +      G +  A 
Sbjct: 545 YNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISL--YGKCGSIEDAK 602

Query: 85  LVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS 144
           + F  + E N V WN II   S     + A+  + +M   G  PN  TF  +L +C+ + 
Sbjct: 603 MQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVG 662

Query: 145 AISEG-KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALI 203
            + EG     +   + G+   P  +  ++++  + G+                       
Sbjct: 663 LVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQ----------------------- 699

Query: 204 TGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL---IE 260
                   LD AR+  +EMP+     V       T+LSAC    ++E+G         +E
Sbjct: 700 --------LDRARKFVEEMPVSANAMVWR-----TLLSACRVHKNIEIGELAAKYLLELE 746

Query: 261 GHGLGSNLHVTNAL-IDMYSKCGDLVKARDLFESIEKRDVISW 302
            H   S + ++NA  +     C D V+       + K    SW
Sbjct: 747 PHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSW 789


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 271/662 (40%), Positives = 390/662 (58%), Gaps = 34/662 (5%)

Query: 69  IEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRM------- 121
           + I     + +L  A L+F+ + E + V WN ++ G++ +     A + +  M       
Sbjct: 116 VMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSIS 175

Query: 122 ---ILSGFVPN------------TYTFPFILKSCAKISAISEGKQIHAH-VLKLGLESDP 165
              +L+ +V N               +  I  +C     +   + + A  +     E D 
Sbjct: 176 WNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDE 235

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
               ++I+ YAQNGEL  A+ +F +S +RD  ++TA+++GY   G LD+AR++FD MP  
Sbjct: 236 VSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMP-- 293

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
           E+N V + + ++     C  M           L E      N+   N +I  Y++ GD+ 
Sbjct: 294 EKNSV-SWNAIIAGYVQCKRMDQAR------ELFEAMPC-QNVSSWNTMITGYAQNGDIA 345

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
           +AR+ F+ + +RD ISW  +I GY  +   +EAL LF +M +     N  TF S L  CA
Sbjct: 346 QARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCA 405

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
            + AL+LGK +H  + K   + +   +  +L+ MY KCGNI  A  VF+G+  K + SWN
Sbjct: 406 EIAALELGKQVHGRVVKAGLE-SGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWN 464

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
            MI+G A HG   +AL LF  M   G+ PDD+T VGVLSAC+H GL+D G +YF +M QD
Sbjct: 465 TMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQD 524

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
           Y I+   +HY CM+DLLGRAG  D+A+ L+K M  +PDAA W +LLGA R+HG  ELGE 
Sbjct: 525 YGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEK 584

Query: 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVH 585
            AK + E+EP+N G YVLLSN+YA +GRW DV  +R R+ D+G+KKVPG S +EV + +H
Sbjct: 585 AAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIH 644

Query: 586 EFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAI 645
            F VGD VHP+   IY  L+E+D  ++K G+V  T  VL+D++EE K   L +HSEKLA+
Sbjct: 645 TFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLAV 704

Query: 646 AYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCND 705
           A+G+++   G  IR++KNLRVC +CH+A K ISKI  R II RD +RFHHF  G CSC D
Sbjct: 705 AFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGD 764

Query: 706 YW 707
           YW
Sbjct: 765 YW 766



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 131/524 (25%), Positives = 222/524 (42%), Gaps = 76/524 (14%)

Query: 159 LGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQL 218
           L  ++D       I  + +NG+ +SA  +FN    R ++S+ A+I+G  S      ARQL
Sbjct: 43  LATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQL 102

Query: 219 FDEMPIRE---ENFVPNESTVVTVLSACA----HMGSLELGNWVCSLIEGHGLGSNLHVT 271
           F++MP R+    N + +       L A       M   ++ +W   L    G   N +V 
Sbjct: 103 FEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAML---SGYAQNGYVK 159

Query: 272 -----------------NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
                            N ++  Y + G +  AR LFES    ++ISWN M+GGY   + 
Sbjct: 160 EAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNR 219

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
             +A  +F +M     E ++V++ +++   A  G L     + A        + +V  WT
Sbjct: 220 LVDARGIFDRM----PERDEVSWNTMISGYAQNGEL-----LEAQRLFEESPVRDVFTWT 270

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
           +++  Y + G +  A +VFDGM  K   SWNA+I+G     + D+A  LF  M  + +  
Sbjct: 271 AMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSS 330

Query: 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494
            +    G        G +   R +F+ M Q   IS     +  ++    ++G  +EA  L
Sbjct: 331 WNTMITGYA----QNGDIAQARNFFDRMPQRDSIS-----WAAIIAGYAQSGYGEEALHL 381

Query: 495 LKTMEMKPDA-----AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV--LLSNM 547
              +EMK D      + +TS L  C     LELG+ V   +++   E+ G YV   L  M
Sbjct: 382 F--VEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLES-GCYVGNALLVM 438

Query: 548 YAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEI 607
           Y   G  DD   +   + +   K+V   +++  G   H F        ++  ++E + + 
Sbjct: 439 YCKCGNIDDAYIVFEGIEE---KEVVSWNTMIAGYARHGF------GKEALMLFESMKKT 489

Query: 608 DALLEK------------SGFVPDTSEVLYDMDEEWKEGALSHH 639
             L +             +G V   +E  Y M +++   A S H
Sbjct: 490 GILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKH 533



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 87/174 (50%), Gaps = 7/174 (4%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           + LS C  +  +   KQVH +++K GL +  +  + L+ +      G++  A +VFE I 
Sbjct: 399 STLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVM--YCKCGNIDDAYIVFEGIE 456

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           E   V WN +I G++       A+  +  M  +G +P+  T   +L +C+    + +G +
Sbjct: 457 EKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTE 516

Query: 152 -IHAHVLKLGLESDPFVHTSLINMYAQNGELESAR-LVFNKSSLRDAVSYTALI 203
             ++     G+ ++   +T +I++  + G L+ A+ L+ N     DA ++ AL+
Sbjct: 517 YFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALL 570


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 286/711 (40%), Positives = 404/711 (56%), Gaps = 59/711 (8%)

Query: 14  ILHFPP----------SSDPPYKLLQNQPSLAL------LSKCTNMQNIKQVHSQIIKTG 57
           +LHFP           SS P  +L Q  P   +      L    +++ ++ VHS+II   
Sbjct: 10  LLHFPKFRKFQSRKVSSSLPKLELDQKSPQETVFLLGQVLDTYPDIRTLRTVHSRIILED 69

Query: 58  LHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKF 117
           L        KL+   A +   D++ A  VF+ I E N +I N +IR +  +      +K 
Sbjct: 70  LRCNSSLGVKLMR--AYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKV 127

Query: 118 YVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ 177
           +  M      P+ YTFP +LK+C+    I  G++IH    K+GL S  FV   L++MY +
Sbjct: 128 FGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGK 187

Query: 178 NGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVV 237
            G L  ARLV ++ S RD VS+ +L+ GYA     DDA                      
Sbjct: 188 CGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDA---------------------- 225

Query: 238 TVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR 297
             L  C  M S+++          H  G+   +  A+ +  ++  +++  +D+F  + K+
Sbjct: 226 --LEVCREMESVKIS---------HDAGTMASLLPAVSNTTTE--NVMYVKDMFFKMGKK 272

Query: 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357
            ++SWNVMIG Y   +   EA+ L+ +M     EP+ V+  SVLPAC    AL LGK IH
Sbjct: 273 SLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIH 332

Query: 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA 417
            YI++  + + N+ L  +LIDMYAKCG ++ A  VF+ M  + + SW AMIS     G+ 
Sbjct: 333 GYIERK-KLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRG 391

Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
             A++LFS++   GL PD I FV  L+AC+HAGLL+ GR  F  M   YKI+P+L+H  C
Sbjct: 392 CDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLAC 451

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537
           MVDLLGRAG   EA   ++ M M+P+  +W +LLGACRVH   ++G   A  L +L PE 
Sbjct: 452 MVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQ 511

Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQS 597
            G YVLLSN+YA AGRW++V  IR  +  KG+KK PG S++EV  ++H FLVGD+ HPQS
Sbjct: 512 SGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQS 571

Query: 598 KHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTK---- 653
             IY  LD +   +++ G+VPD+   L+D++EE KE  L+ HSEKLAI + L++TK    
Sbjct: 572 DEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEE 631

Query: 654 -PGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSC 703
               TIRI KNLR+CG+CH A KLIS+I +REII RD NRFH F+ G CSC
Sbjct: 632 DSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSC 682


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 259/633 (40%), Positives = 390/633 (61%), Gaps = 15/633 (2%)

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV-PNTYTFPFILK 138
           + +A  VF+T+  P+ V+WN ++ G S S     A++ + RM+  G V P+  T   +L 
Sbjct: 165 VDHARKVFDTVPSPDTVLWNTLLAGLSGSE----AVESFARMVCDGSVRPDATTLASVLP 220

Query: 139 SCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVS 198
           + A+++ ++ G+ +H+   K GL     V T LI++Y++ G++ESAR +F+     D V+
Sbjct: 221 AAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVA 280

Query: 199 YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           Y ALI+GY+  G +  +  LF E+        PN ST+V ++   +  G   L   +   
Sbjct: 281 YNALISGYSVNGMVGSSVNLFTEL--MTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGF 338

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
           +   G  +N  V+ A+  ++ +  D+  AR  F+++ ++ + SWN MI GY      + A
Sbjct: 339 VLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMA 398

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
           + LF QM++ N+ PN +T  S L ACA LGAL LGKW+H  I +   +  NV + T+LID
Sbjct: 399 VALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLE-PNVYVMTALID 457

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
           MYAKCG+I  A ++F+ M  K + SWNAMI+G  +HG+  +AL L+  M+   L P   T
Sbjct: 458 MYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSAT 517

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
           F+ VL AC+H GL++ G + F +M  DY I+P ++H  CMVDLLGRAG   EA  L+   
Sbjct: 518 FLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELISEF 577

Query: 499 EMKPDAAI----WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554
              P +A+    W +LLGAC VH   +L +  ++ L EL+PEN G YVLLSN++    ++
Sbjct: 578 ---PKSAVGPGVWGALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNLHTSKKQY 634

Query: 555 DDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKS 614
            + A +R     + + K PG + IE+G+  H F+ GD+ HPQS+ IY  L+++ A + ++
Sbjct: 635 SEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSYLEKLTAKMIEA 694

Query: 615 GFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSAT 674
           G+ P+T   LYD++EE KE  +  HSEKLAIA+GL+ST+PGT IRI+KNLRVC +CH+AT
Sbjct: 695 GYRPETEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHNAT 754

Query: 675 KLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           K ISK+  R I+ RD +RFHHF+DG CSC DYW
Sbjct: 755 KFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 138/530 (26%), Positives = 270/530 (50%), Gaps = 33/530 (6%)

Query: 30  NQPSLALLSKCTNMQNIKQVHSQIIKTGLH--NTQFALSKLIEICAV-SPFGDLSYALLV 86
            +P L L++  + ++++ Q+ +  + +G +  +   A S L+   ++ +P G L   L +
Sbjct: 18  RRPYLRLVALSSTLRHLDQILAVSLASGHYPLDPAPATSLLLRYASLRAPTGHL---LRL 74

Query: 87  FETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKI--- 143
           F     P++ + N ++R  SL S         +R  L    P++++F F   S A +   
Sbjct: 75  FRGFPRPDRFLRNALLR--SLPS---------LRPRLLFPCPDSFSFAFAATSLAALCSR 123

Query: 144 ----SAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSY 199
               ++ S  + +HA  +  G  +D FV ++L  +Y     ++ AR VF+     D V +
Sbjct: 124 GGGAASSSAARALHALAVAAGYAADTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLW 183

Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
             L+ G +    ++   ++  +  +R     P+ +T+ +VL A A +  + +G  V S  
Sbjct: 184 NTLLAGLSGSEAVESFARMVCDGSVR-----PDATTLASVLPAAAEVADVTMGRCVHSFA 238

Query: 260 EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEAL 319
           E  GL  + HV   LI +YSKCGD+  AR LF+ +EK D++++N +I GY+       ++
Sbjct: 239 EKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSV 298

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
            LF +++   + PN  T ++++P  +  G   L + +H ++ K+    N+  + T++  +
Sbjct: 299 NLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANS-PVSTAITTL 357

Query: 380 YAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439
           + +  ++++A + FD M  KT+ SWNAMISG A +G  + A++LF +M+   ++P+ IT 
Sbjct: 358 HCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITI 417

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME 499
              LSAC   G L +G+ + + +I +  + P +     ++D+  + G   EA  +  TM+
Sbjct: 418 SSTLSACAQLGALSLGK-WLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMD 476

Query: 500 MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549
            K +   W +++    +HG+      + K +L+     P +   LS +YA
Sbjct: 477 NK-NVVSWNAMIAGYGLHGQGAEALKLYKDMLDAH-LLPTSATFLSVLYA 524


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 261/606 (43%), Positives = 374/606 (61%), Gaps = 42/606 (6%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGL--ESDPFVHTSLINMYAQNGELESARLVFNKSSL 193
           +L SC   S      ++HA VL+ GL   +D  V   L   YA +G L+ +  +  ++  
Sbjct: 295 LLTSC---STARRAAELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRTRD 351

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
             A+ YT+ I  ++SRG+   A  L  +M    +  +P   T+   L AC     L  G 
Sbjct: 352 PTAIFYTSAIHAHSSRGHRLPALALLSDM--LAQGLLPTAHTLSASLPACR---GLSPGR 406

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGD------------------------------ 283
            +        L  + +V  AL+ MY++ GD                              
Sbjct: 407 ALHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADM 466

Query: 284 --LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
             L  AR LF+ +  +D + WN MI GYT      EAL LFR+ML S +EP++VT + VL
Sbjct: 467 GALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVL 526

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
            A A LG ++ GKW+H+Y+  + +   +V + T+LIDMY KCG++  A  VF G+G K +
Sbjct: 527 SAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDI 586

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
             WNAMI+G AMHG + KAL +F +   +GL P DITF+G+L+AC+H+G+++ GR++F +
Sbjct: 587 VVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQS 646

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
           M ++Y I PK++HYGCMVDLLGRAGL  EA  L+++M++ PDA +W SLL ACR+H  + 
Sbjct: 647 MEREYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMS 706

Query: 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
           LG+ +A +L+     N G Y+LLSN+YA  G W +VA +R+ +   G++K PGCSSIE+ 
Sbjct: 707 LGQQIADYLVAKGLANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEID 766

Query: 582 SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
             V+EF+ GD  HP++  IY MLD+++ L+++ G VP T  VL+D+DE  KE AL+ HSE
Sbjct: 767 REVYEFVAGDMSHPRTDEIYVMLDKMNGLVKEHGHVPQTELVLHDLDEATKEKALAVHSE 826

Query: 642 KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
           KLA+A+GLIST+PG TI+IVKNLR C +CH+  KLIS+I  R+I+ RDRNRFHHF DG+C
Sbjct: 827 KLALAFGLISTQPGATIKIVKNLRACSDCHAVLKLISRITGRKIVFRDRNRFHHFVDGSC 886

Query: 702 SCNDYW 707
           SC DYW
Sbjct: 887 SCGDYW 892


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 263/663 (39%), Positives = 402/663 (60%), Gaps = 6/663 (0%)

Query: 43  MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNII 102
           ++  K+VH  ++K G  +    ++ LI   A   FG +  A  +F+ + EP+ V WN++I
Sbjct: 211 VKECKRVHGYVLKLGFGSNTAVVNSLIA--AYFKFGGVESAHNLFDELSEPDVVSWNSMI 268

Query: 103 RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE 162
            G  ++      ++ +++M++ G   +  T   +L +CA I  +S G+ +H   +K    
Sbjct: 269 NGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFS 328

Query: 163 SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
            +     +L++MY++ G L  A  VF K      VS+T++I  Y   G   DA  LFDEM
Sbjct: 329 EEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEM 388

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
             + +   P+  TV +++ ACA   SL+ G  V S +  +G+GSNL VTNALI+MY+KCG
Sbjct: 389 --QSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCG 446

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
            + +AR +F  I  +D++SWN MIGGY+      EAL LF  M Q   +P+D+T   VLP
Sbjct: 447 SVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDM-QKQFKPDDITMACVLP 505

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           ACA L ALD G+ IH +I +     +++ +  +L+DMYAKCG +  A+ +FD +  K L 
Sbjct: 506 ACAGLAALDKGREIHGHILR-RGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLI 564

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           SW  MI+G  MHG  ++A+S F+ M   G++PD+ +F  +L+AC+H+GLL+ G ++FN+M
Sbjct: 565 SWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSM 624

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
             +  + PKL+HY C+VDLL R G   +A   +++M +KPD  IW  LL  CR+H  ++L
Sbjct: 625 RNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKL 684

Query: 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582
            E VA+H+ ELEP+N   YV+L+N+YA A +W++V  +R R+  +G K+ PGCS IEVG 
Sbjct: 685 AEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGG 744

Query: 583 VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEK 642
             + F+ G+  HPQ+K I  +L ++   ++   +      VL + D+  KE     HSEK
Sbjct: 745 KFNIFVAGNSKHPQAKKIDVLLSKLTMQMQNEDYSSMFRYVLINEDDMEKEMIQCGHSEK 804

Query: 643 LAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCS 702
            A+A+G+++  PG T+R+ KN RVCG+CH   K +SK    EI+ RD NRFHHFKDG CS
Sbjct: 805 SAMAFGILNLPPGRTVRVSKNRRVCGDCHEMGKFMSKTTKMEIVLRDSNRFHHFKDGLCS 864

Query: 703 CND 705
           C D
Sbjct: 865 CRD 867



 Score =  238 bits (606), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 159/492 (32%), Positives = 260/492 (52%), Gaps = 22/492 (4%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L L ++  ++++ K+VHS II  G+   +   +KL+ +      GDL     +F+ I   
Sbjct: 101 LQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFM--YVNCGDLVQGRKIFDKIMND 158

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
              +WN ++  ++   +   ++  + +M   G V N YTF  +LK  A +  + E K++H
Sbjct: 159 KVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVH 218

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
            +VLKLG  S+  V  SLI  Y + G +ESA  +F++ S  D VS+ ++I G    G+  
Sbjct: 219 GYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSG 278

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG------SN 267
           +  ++F +M I       + +T+V+VL ACA++G+L LG  +      HG G        
Sbjct: 279 NGLEIFIQMLIL--GVEVDLTTLVSVLVACANIGNLSLGRAL------HGFGVKACFSEE 330

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
           +  +N L+DMYSKCG+L  A ++F  +    ++SW  +I  Y     Y +A+ LF +M  
Sbjct: 331 VVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQS 390

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
             + P+  T  S++ ACA   +LD G+ +H+Y+ KN    +N+ +  +LI+MYAKCG+++
Sbjct: 391 KGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMG-SNLPVTNALINMYAKCGSVE 449

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
            A  VF  +  K + SWN MI G + +   ++AL LF  M  +  +PDDIT   VL AC 
Sbjct: 450 EARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPACA 508

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGC-MVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
               LD GR+    +++    S    H  C +VD+  + GL   A+ LL  M  K D   
Sbjct: 509 GLAALDKGREIHGHILRRGYFSD--LHVACALVDMYAKCGLLVLAQ-LLFDMIPKKDLIS 565

Query: 507 WTSLLGACRVHG 518
           WT ++    +HG
Sbjct: 566 WTVMIAGYGMHG 577



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 114/378 (30%), Positives = 191/378 (50%), Gaps = 5/378 (1%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           +L+ CA+  ++ +GK++H+ ++  G+  D  +   L+ MY   G+L   R +F+K     
Sbjct: 100 VLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDK 159

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
              +  L++ YA  G   ++  LF +M  ++   V N  T   VL   A +G ++    V
Sbjct: 160 VFLWNLLMSEYAKIGNFRESVSLFKKM--QKLGVVGNCYTFTCVLKCFAALGKVKECKRV 217

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
              +   G GSN  V N+LI  Y K G +  A +LF+ + + DV+SWN MI G       
Sbjct: 218 HGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFS 277

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
              L +F QML   +E +  T +SVL ACA +G L LG+ +H +  K       V    +
Sbjct: 278 GNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFS-EEVVFSNT 336

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           L+DMY+KCGN+  A +VF  MG  T+ SW ++I+     G    A+ LF  M  +G++PD
Sbjct: 337 LLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPD 396

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
             T   ++ AC  +  LD GR   + +I++  +   L     ++++  + G  +EA  + 
Sbjct: 397 IYTVTSIVHACACSSSLDKGRDVHSYVIKN-GMGSNLPVTNALINMYAKCGSVEEARLVF 455

Query: 496 KTMEMKPDAAIWTSLLGA 513
             + +K D   W +++G 
Sbjct: 456 SKIPVK-DIVSWNTMIGG 472



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 187/399 (46%), Gaps = 41/399 (10%)

Query: 201 ALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE 260
           A I  +   G L +A +L      + +++    ++  +VL  CA   SLE G  V S+I 
Sbjct: 66  AKINKFCEMGDLRNAIELL----TKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVII 121

Query: 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALM 320
            +G+  +  +   L+ MY  CGDLV+ R +F+ I    V  WN+++  Y    +++E++ 
Sbjct: 122 SNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVS 181

Query: 321 LFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMY 380
           LF++M +  +  N  TF  VL   A LG +   K +H Y+ K     +N ++  SLI  Y
Sbjct: 182 LFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFG-SNTAVVNSLIAAY 240

Query: 381 AKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFV 440
            K G +++A  +FD +    + SWN+MI+G  ++G +   L +F +M+  G++ D  T V
Sbjct: 241 FKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLV 300

Query: 441 GVLSACNHAGLLDIGRQ---------------YFNAMIQDYKISPKLQ------------ 473
            VL AC + G L +GR                + N ++  Y     L             
Sbjct: 301 SVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDT 360

Query: 474 ---HYGCMVDLLGRAGLFDEAEALLKTME---MKPDAAIWTSLLGACRVHGRLELGESVA 527
               +  ++    R GL+ +A  L   M+   ++PD    TS++ AC     L+ G  V 
Sbjct: 361 TIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVH 420

Query: 528 KHLLE--LEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564
            ++++  +    P    L+ NMYA  G  ++   + +++
Sbjct: 421 SYVIKNGMGSNLPVTNALI-NMYAKCGSVEEARLVFSKI 458


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 267/690 (38%), Positives = 403/690 (58%), Gaps = 65/690 (9%)

Query: 45  NIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF---GDLSYALLVFETIREPNQVIWNNI 101
           ++KQ+H+QI+KT    T+     L  IC +  +   G L ++L  F  +R          
Sbjct: 23  HVKQLHAQIVKT----TKATPHSLAWICIIKCYASHGLLRHSLASFNLLRS--------- 69

Query: 102 IRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGL 161
                                  G  P+ + FP +L++       +  + +HA V++LG 
Sbjct: 70  ----------------------FGISPDRHLFPSLLRASTLFKHFNLAQSLHAAVIRLGF 107

Query: 162 ESDPFVHTSLINMYAQ----------------------NGELESARLVFNKSSLRDAVSY 199
             D +   +L+NMY++                      + +++S R +F++  +RD VS+
Sbjct: 108 HFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPVRDVVSW 167

Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
             +I G A  G  ++A  +  EM   +EN  P+  T+ ++L       ++  G  +    
Sbjct: 168 NTVIAGNAQNGMYEEALNMVKEMG--KENLRPDSFTLSSILPIFTEHANVTKGKEIHGYA 225

Query: 260 EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEAL 319
             HG   ++ + ++LIDMY+KC  +  +   F  +  RD ISWN +I G      + + L
Sbjct: 226 IRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGL 285

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
             FR+ML+  ++P  V+F SV+PACA+L AL+LGK +HAYI +     +N  + +SL+DM
Sbjct: 286 GFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFD-DNKFIASSLLDM 344

Query: 380 YAKCGNIKAAEQVFDG--MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI 437
           YAKCGNIK A  +F+   M  + + SW A+I G AMHG A  A+SLF  M+ +G++P  +
Sbjct: 345 YAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYV 404

Query: 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT 497
            F+ VL+AC+HAGL+D G +YFN+M +D+ ++P L+HY  + DLLGRAG  +EA   +  
Sbjct: 405 AFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISN 464

Query: 498 MEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557
           M  +P  ++W++LL ACR H  +EL E V   +L ++P N GA+V++SN+Y+ A RW D 
Sbjct: 465 MGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDA 524

Query: 558 ATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFV 617
           A +R R+   G+KK P CS IEVG+ VH FL GDK HP    I E L+ +   +EK G+V
Sbjct: 525 AKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQMEKEGYV 584

Query: 618 PDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLI 677
            DT+EVL+D+DEE K   L  HSE+LAIA+G+IST  GTTIR++KN+RVC +CH+A K +
Sbjct: 585 LDTNEVLHDVDEEHKRDLLRTHSERLAIAFGIISTTSGTTIRVIKNIRVCVDCHTAIKFM 644

Query: 678 SKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +KI  REII RD +RFHHFK+G+CSC DYW
Sbjct: 645 AKIVGREIIVRDNSRFHHFKNGSCSCGDYW 674


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 254/572 (44%), Positives = 363/572 (63%), Gaps = 4/572 (0%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           IL++CA    +S G+ +H   +K  +        +L++MYA+ G L+ A LVF+  S+R 
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
            V++T+LI  YA  G  D+A +LF EM    E   P+  T+ TVL ACA  GSLE G  V
Sbjct: 64  VVTWTSLIAAYAREGLSDEAIRLFHEMD--REGVSPDIFTITTVLHACACNGSLENGKDV 121

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
            + I  + + SN+ V NAL+DMY+KCG +  A  +F  +  +D+ISWN MIGGY+  S  
Sbjct: 122 HNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLP 181

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
            EAL LF  M+   ++P+  T   +LPACA L +LD GK +H +I +N    ++  +  +
Sbjct: 182 NEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRN-GFFSDQQVANA 239

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           L+DMY KCG    A  +FD +  K L +W  MI+G  MHG  + A++ F+ M   G++PD
Sbjct: 240 LVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPD 299

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
           +++F+ +L AC+H+GLLD G ++FN M  +  + PKL+HY C+VDLL R+G    A   +
Sbjct: 300 EVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFI 359

Query: 496 KTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555
           K+M ++PDA IW +LL  CR+H  ++L E VA+H+ ELEPEN G YVLL+N YA A +W+
Sbjct: 360 KSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWE 419

Query: 556 DVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSG 615
           +V  +R ++  +G+KK PGCS IEV S VH FL G+  HPQ+K I  +L  + + +++ G
Sbjct: 420 EVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEG 479

Query: 616 FVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATK 675
           + P T   L + D   KE AL  HSEKLA+A+G+++  P  TIR+ KNLRVCG+CH   K
Sbjct: 480 YFPKTRYALINADSLQKETALCGHSEKLAMAFGILNLPPARTIRVSKNLRVCGDCHEMAK 539

Query: 676 LISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            ISK   REI+ RD NRFHHFKDG C C  +W
Sbjct: 540 FISKTLGREIVLRDSNRFHHFKDGVCCCRGFW 571



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/386 (30%), Positives = 210/386 (54%), Gaps = 11/386 (2%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           +++L  C N  ++   + VH   +K  +H      + L+++ A    G L  A+LVF+ +
Sbjct: 2   VSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYA--KCGVLDGAILVFDLM 59

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
                V W ++I  ++       AI+ +  M   G  P+ +T   +L +CA   ++  GK
Sbjct: 60  SVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGK 119

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            +H ++ +  ++S+ FV  +L++MYA+ G +E A  VF +  ++D +S+  +I GY+   
Sbjct: 120 DVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNS 179

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
             ++A  LF +M +  +   P+ +T+  +L ACA + SL+ G  V   I  +G  S+  V
Sbjct: 180 LPNEALSLFGDMVLEMK---PDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQV 236

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            NAL+DMY KCG  V AR LF+ I  +D+I+W VMI GY        A+  F +M Q+ I
Sbjct: 237 ANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGI 296

Query: 331 EPNDVTFLSVLPACAYLGALDLG-KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           EP++V+F+S+L AC++ G LD G ++ +   D+ + K   +  +  ++D+ A+ G +  A
Sbjct: 297 EPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVK-PKLEHYACIVDLLARSGKLAMA 355

Query: 390 EQVFDGMGYKTLAS-WNAMISGLAMH 414
            +    M  +  A+ W A++SG  +H
Sbjct: 356 YKFIKSMPIEPDATIWGALLSGCRIH 381


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 262/610 (42%), Positives = 377/610 (61%), Gaps = 44/610 (7%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           +L  CA  S  +E   IHA  ++  ++ D  V   L   YA +G L+ A  +  ++    
Sbjct: 30  LLAGCASASRAAE---IHAAAVRASVDQDKAVAFRLQRAYAASGRLDLAVALLRRTPDPT 86

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN-- 253
           AV YT+ I  ++SRG    A  L  EM +     +P   T+   L AC   G L +G   
Sbjct: 87  AVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLLPTAHTLSASLPAC---GCLAVGRAL 143

Query: 254 -------------WVCSLIEG---------------HGLGSNLHVTN--ALIDMYSKCGD 283
                        +V + + G                G+  + HV +  A++  Y+K G 
Sbjct: 144 HGYAVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMGQ 203

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           L  AR LF+++ ++D++ WN M+ GYT      EAL LFRQML+S +EP++V+ +  L A
Sbjct: 204 LDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSA 263

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLN---NVSLWTSLIDMYAKCGNIKAAEQVF---DGMG 397
            A LG  + G+W+H+++    ++     N  + T+L+DMY KCG+++ A  VF    G G
Sbjct: 264 VAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGG 323

Query: 398 YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
            + + +WNAMI+G AMHG++ +AL  F ++  +GL P DITF+GVL+AC+H+GL+D GR 
Sbjct: 324 DRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRA 383

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
            F AM ++Y I PK++HYGCMVDLLGRAG  +EA  L+++M+ KPDAA+W SLLGACR+H
Sbjct: 384 LFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGACRLH 443

Query: 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577
             L LG+ VA +L+     N G YVLLSNMYA AG+W +V  +R+ +   G++K PGCS+
Sbjct: 444 KNLALGQRVADYLVGNGLANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCSA 503

Query: 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALS 637
           +EVG  V EF+ GD+ HP+S  IY  L+E++++    G VP T  VL+D+D+  KE AL+
Sbjct: 504 VEVGRRVVEFVAGDRSHPRSAEIYAKLEEVNSIARARGHVPHTELVLHDLDDAAKERALA 563

Query: 638 HHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFK 697
            HSEKLA+A+GLIST P T I+IVKNLR C +CH+  KL+S+   R+I+ RDRNRFHHF 
Sbjct: 564 VHSEKLALAFGLISTPPRTGIKIVKNLRACADCHAVLKLVSEATGRKIVFRDRNRFHHFV 623

Query: 698 DGNCSCNDYW 707
           DG+CSC DYW
Sbjct: 624 DGSCSCGDYW 633



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 135/470 (28%), Positives = 224/470 (47%), Gaps = 59/470 (12%)

Query: 11  SPSILHFPPSSDPPYK--LLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKL 68
           + ++L  P S+  P     L    + ALL+ C +     ++H+  ++  +   +    +L
Sbjct: 3   TAAVLPSPASTRHPAGGGALTADRAAALLAGCASASRAAEIHAAAVRASVDQDKAVAFRL 62

Query: 69  IEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILS--GF 126
               A S   DL+ ALL      +P  V + + I  HS       A+     M+LS  G 
Sbjct: 63  QRAYAASGRLDLAVALL--RRTPDPTAVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGL 120

Query: 127 VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARL 186
           +P  +T    L +C     ++ G+ +H + +KL L  +P+V T+L+ MYA+ GE  +AR 
Sbjct: 121 LPTAHTLSASLPAC---GCLAVGRALHGYAVKLALSGEPYVATALLGMYARAGEAAAARA 177

Query: 187 VFNKSSLR---DAVSYTALITGYASRGYLDDARQLFDEMPIRE----------------- 226
           +F+   +R     VS TA+++ YA  G LDDAR LFD +P ++                 
Sbjct: 178 LFD--GMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRP 235

Query: 227 ------------ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS----NLHV 270
                           P+E +VV  LSA A +G+ E G W+ S +   G  +    N  V
Sbjct: 236 SEALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARV 295

Query: 271 TNALIDMYSKCGDLVKARDLFESI---EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
             AL+DMY KCG L +A  +F  +     RDV++WN MI GY      +EAL  F Q+  
Sbjct: 296 GTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRA 355

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
             + P D+TF+ VL AC++ G +D G+ + A +++ +  +  V  +  ++D+  + G ++
Sbjct: 356 QGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVE 415

Query: 388 AAEQVFDGMGYKTLAS-WNAMISGLAMHGKADKALSLFSR----MIGEGL 432
            A  +   M  K  A+ W +++    +H    K L+L  R    ++G GL
Sbjct: 416 EAFDLVQSMKAKPDAAMWASLLGACRLH----KNLALGQRVADYLVGNGL 461


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 255/674 (37%), Positives = 412/674 (61%), Gaps = 18/674 (2%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           KQVH+  ++ G  N+ F ++ L+ +      G L+ + ++  +    + V WN ++    
Sbjct: 218 KQVHAYGLRKGELNS-FIINTLVAM--YGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLC 274

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG-LESDP 165
            +   + A+++   M+L G  P+ +T   +L +C+ +  +  GK++HA+ LK G L+ + 
Sbjct: 275 QNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 334

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           FV ++L++MY    ++ S   VF+    R    + A+ITGYA   Y ++A  LF EM   
Sbjct: 335 FVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEME-E 393

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
               + N +T+  V+ AC   G+      +   +   GL  +  V NAL+DMYS+ G + 
Sbjct: 394 SAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKID 453

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-----------QSNIEPND 334
            A+ +F  +E RD+++WN +I GY  +  +++AL++  +M            + +++PN 
Sbjct: 454 IAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNS 513

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           +T +++LP+CA L AL  GK IHAY  KN+    +V++ ++L+DMYAKCG ++ + +VFD
Sbjct: 514 ITLMTILPSCAALSALAKGKEIHAYAIKNNLA-TDVAVGSALVDMYAKCGCLQMSRKVFD 572

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
            +  + + +WN ++    MHG +  A+ +   M+ +G++P+++TF+ V +AC+H+G+++ 
Sbjct: 573 QIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNE 632

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD-AAIWTSLLGA 513
           G + F  M +DY + P   HY C+VDLLGRAG   EA  L+  +    D A  W+SLLGA
Sbjct: 633 GLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGA 692

Query: 514 CRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVP 573
           CR+H  LE+GE  A++L++LEP     YVLL+N+Y+ AG W     +R  +  +G++K P
Sbjct: 693 CRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEP 752

Query: 574 GCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKE 633
           GCS IE G  VH+F+ GD  HPQS+ +   L+ +   + K G++PDTS VL++++E+ KE
Sbjct: 753 GCSWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLWERMRKEGYIPDTSCVLHNVEEDEKE 812

Query: 634 GALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRF 693
             L  HSEKLAIA+G+++T PGT IR+ KNLRVC +CH ATK ISK+ +REII RD  RF
Sbjct: 813 ILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKVVDREIILRDVRRF 872

Query: 694 HHFKDGNCSCNDYW 707
           HHFK+G CSC DYW
Sbjct: 873 HHFKNGTCSCGDYW 886



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 131/419 (31%), Positives = 215/419 (51%), Gaps = 10/419 (2%)

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
           W +++R    S+    A+  Y+ MI+ G  P+ + FP +LK+ A +  +  GKQIHAHV 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 158 KLGLESDPF-VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDAR 216
           K G   D   V  +L+N+Y + G+  +   VF++ S R+ VS+ +LI+   S    + A 
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 217 QLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS---NLHVTNA 273
           + F  M   +E+  P+  T+V+V  AC++    E G  +   +  +GL     N  + N 
Sbjct: 181 EAFRCM--LDEDVEPSSFTLVSVALACSNFPMPE-GLLMGKQVHAYGLRKGELNSFIINT 237

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           L+ MY K G L  ++ L  S E RD+++WN ++        + EAL   R+M+   +EP+
Sbjct: 238 LVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPD 297

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
             T  SVLPAC++L  L  GK +HAY  KN     N  + ++L+DMY  C  + +  +VF
Sbjct: 298 GFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVF 357

Query: 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRM-IGEGLQPDDITFVGVLSACNHAGLL 452
           DGM  + +  WNAMI+G A +   ++AL LF  M    GL  +  T  GV+ AC  +G  
Sbjct: 358 DGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAF 417

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
              ++  +  +    +         ++D+  R G  D A+ +   ME + D   W +++
Sbjct: 418 S-KKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDR-DLVTWNTII 474



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 128/503 (25%), Positives = 241/503 (47%), Gaps = 26/503 (5%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ALL    ++Q++   KQ+H+ + K G       ++  + +      GD      VF+ I 
Sbjct: 98  ALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTL-VNLYRKCGDFGAVYKVFDRIS 156

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKI---SAISE 148
           E NQV WN++I          +A++ +  M+     P+++T   +  +C+       +  
Sbjct: 157 ERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLM 216

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           GKQ+HA+ L+ G E + F+  +L+ MY + G+L S++++      RD V++  +++    
Sbjct: 217 GKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQ 275

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG-LGSN 267
                +A +   EM +  E   P+  T+ +VL AC+H+  L  G  + +    +G L  N
Sbjct: 276 NEQFLEALEYLREMVL--EGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDEN 333

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
             V +AL+DMY  C  ++    +F+ +  R +  WN MI GY      +EAL+LF +M +
Sbjct: 334 SFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEE 393

Query: 328 S-NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
           S  +  N  T   V+PAC   GA    + IH ++ K     +   +  +L+DMY++ G I
Sbjct: 394 SAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRF-VQNALMDMYSRLGKI 452

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM-IGE----------GLQPD 435
             A+++F  M  + L +WN +I+G     + + AL +  +M I E           L+P+
Sbjct: 453 DIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPN 512

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
            IT + +L +C     L  G++     I++  ++  +     +VD+  + G    +  + 
Sbjct: 513 SITLMTILPSCAALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMSRKVF 571

Query: 496 KTMEMKPDAAIWTSLLGACRVHG 518
             + ++ +   W  ++ A  +HG
Sbjct: 572 DQIPIR-NVITWNVIVMAYGMHG 593



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 131/241 (54%), Gaps = 10/241 (4%)

Query: 302 WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361
           W  ++     ++  +EA++ +  M+   I+P++  F ++L A A L  +DLGK IHA++ 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421
           K    +++V++  +L+++Y KCG+  A  +VFD +  +   SWN++IS L    K + AL
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNH----AGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
             F  M+ E ++P   T V V  AC++     GLL +G+Q     ++  +++  +     
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLL-MGKQVHAYGLRKGELNSFI--INT 237

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA-CRVHGRLELGESVAKHLLE-LEP 535
           +V + G+ G    ++ LL + E + D   W ++L + C+    LE  E + + +LE +EP
Sbjct: 238 LVAMYGKMGKLASSKVLLGSFEGR-DLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEP 296

Query: 536 E 536
           +
Sbjct: 297 D 297


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 273/679 (40%), Positives = 390/679 (57%), Gaps = 76/679 (11%)

Query: 31  QPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           + +L+ L KC     +KQ+H++++K+GL    +A++K +  C  S F   ++ +  F   
Sbjct: 12  EHNLSCLQKCPTEVELKQIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVF-FNGF 70

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
             P+  +WN +IRG S S  P  ++  Y RM+      N YTFPF+LK+C+ +SA  E  
Sbjct: 71  DRPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETT 130

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           QIHAH+ K G   D         +YA N                      +LI  YA  G
Sbjct: 131 QIHAHITKFGYGHD---------IYAVN----------------------SLINSYAVTG 159

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
               A  LFD   I+E + V                      +W                
Sbjct: 160 NFKHAHLLFDR--IQEPDAV----------------------SW---------------- 179

Query: 271 TNALIDMYSKCGDLVKARDLFESI-EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
            N++I  Y K G++  A  LF  + EK + ISW  MI GY      KEAL LF +M  SN
Sbjct: 180 -NSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSN 238

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           + P++V+  S L AC+ LGAL+ GKWIH+Y +K   ++++V L   LIDMYAKCG ++ A
Sbjct: 239 VPPDNVSLASALSACSQLGALEQGKWIHSYANKTRTRIDSV-LCCVLIDMYAKCGEMEEA 297

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
             VF  M  K++  W A+ISG A HG   +A+S F  M   G++P+ ITF  VL+AC++ 
Sbjct: 298 LGVFKNMKTKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYT 357

Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
           GL++ G+  FN + +DY + P ++HYGCMVDLLGRAGL +EA   ++ M +KP+A IW S
Sbjct: 358 GLVEEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGS 417

Query: 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
           LL AC++H  +ELGE + + L+E++  + G YV ++N++A   +WD  A  R  + ++G+
Sbjct: 418 LLKACQIHKNIELGEKIGEILIEMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGV 477

Query: 570 KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM-D 628
            KVPGCS+I +    HEFL GD+ H + + I      +   LE++G+VP+  ++L D+ D
Sbjct: 478 VKVPGCSAISLEGTTHEFLAGDRSHAEIQEIRTKWRFVRRKLEENGYVPELEDMLLDLVD 537

Query: 629 EEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIAR 688
           +E KE  +  HSEKLAI YGL+ TKPGTTIRI+KNLRVC +CH    LISKI+ R+I+ R
Sbjct: 538 DEEKEAIVHQHSEKLAITYGLMKTKPGTTIRIMKNLRVCKDCHKVMNLISKIYKRDIVMR 597

Query: 689 DRNRFHHFKDGNCSCNDYW 707
           DR RFHHFKDG CSC DYW
Sbjct: 598 DRTRFHHFKDGKCSCGDYW 616


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 275/709 (38%), Positives = 400/709 (56%), Gaps = 67/709 (9%)

Query: 63  FALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI 122
           F  + L+ + A S  G L+ A  VF  + E + V W  ++ G + +     AIK  + M 
Sbjct: 99  FTWNSLLSMFAKS--GRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 123 LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELE 182
             GF P  +T   +L SCA   A + G+++H+ V+KLGL S   V  S++NMY + G+ E
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAE 216

Query: 183 SARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR----------------- 225
           +A  VF +  +R   S+ A+++     G +D A  LF+ MP R                 
Sbjct: 217 TASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGL 276

Query: 226 -------------EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
                        E +  P+E T+ +VLSACA++G++ +G  V + I    +  N  VTN
Sbjct: 277 DAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN 336

Query: 273 ALIDMYSKCG---------------------------------DLVKARDLFESIEKRDV 299
           ALI  Y+K G                                 D+  AR++F  +  RDV
Sbjct: 337 ALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDV 396

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
           ++W  MI GY       EA+ LFR M+    EPN  T  +VL  CA L  LD GK IH  
Sbjct: 397 VAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCR 456

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-KTLASWNAMISGLAMHGKAD 418
             ++  + ++ S+  ++I MYA+ G+   A ++FD + + K   +W +MI  LA HG+ +
Sbjct: 457 AIRSLLERSS-SVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGE 515

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478
           +A+ LF  M+  G++PD IT+VGVLSAC+HAG ++ G++Y++ +  +++I+P++ HY CM
Sbjct: 516 EAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACM 575

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
           VDLL RAGLF EA+  ++ M ++PDA  W SLL ACRVH   EL E  A+ LL ++P N 
Sbjct: 576 VDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNS 635

Query: 539 GAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSK 598
           GAY  ++N+Y+  GRW D A I     +K ++K  G S   + S +H F   D VHPQ  
Sbjct: 636 GAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRD 695

Query: 599 HIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTI 658
            +Y M   +   ++ +GFVPD   VL+D+D+E KE  LS HSEKLAIA+GLIST   TT+
Sbjct: 696 AVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTL 755

Query: 659 RIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           R++KNLRVC +CH+A K ISK+ +REII RD  RFHHF+DG CSC DYW
Sbjct: 756 RVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/411 (24%), Positives = 170/411 (41%), Gaps = 99/411 (24%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           +  +L+ C   +    G+ IHA  +K GL +  ++  +L++ Y +               
Sbjct: 29  YARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETA------------- 75

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
                            G L DAR+LFDE+P+   N                        
Sbjct: 76  --------------GGAGGLRDARRLFDEIPLARRNVF---------------------- 99

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
            W                 N+L+ M++K G L  AR +F  + +RD +SW VM+ G    
Sbjct: 100 TW-----------------NSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRA 142

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK---------- 362
             + EA+     M      P   T  +VL +CA   A  +G+ +H+++ K          
Sbjct: 143 GRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVA 202

Query: 363 --------------------NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
                                   + +VS W +++ +    G +  AE +F+ M  +++ 
Sbjct: 203 NSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIV 262

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGE-GLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
           SWNAMI+G   +G   KAL LFSRM+ E  + PD+ T   VLSAC + G + IG+Q  +A
Sbjct: 263 SWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQ-VHA 321

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL-KTMEMKPDAAIWTSLL 511
            I   +++   Q    ++    ++G  + A  ++ ++ME   +   +T+LL
Sbjct: 322 YILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALL 372



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/432 (25%), Positives = 190/432 (43%), Gaps = 73/432 (16%)

Query: 30  NQPSLALLS---KCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLV 86
           +Q + AL+S   K  +++N +++  Q ++T L+   F  + L+E       GD+  A  +
Sbjct: 332 SQVTNALISTYAKSGSVENARRIMDQSMETDLNVISF--TALLE--GYVKIGDMESAREM 387

Query: 87  FETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAI 146
           F  +   + V W  +I G+  +     AI  +  MI  G  PN+YT   +L  CA ++ +
Sbjct: 388 FGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACL 447

Query: 147 SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-DAVSYTALITG 205
             GKQIH   ++  LE    V  ++I MYA++G    AR +F++   R + +++T++I  
Sbjct: 448 DYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVA 507

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG-HGL 264
            A  G  ++A  LF+EM        P+  T V VLSAC+H G +  G      I+  H +
Sbjct: 508 LAQHGQGEEAVGLFEEML--RAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQI 565

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
              +     ++D+ ++ G       LF                         EA    R+
Sbjct: 566 APEMSHYACMVDLLARAG-------LF------------------------SEAQEFIRR 594

Query: 325 MLQSNIEPNDVTFLSVLPAC-----AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
           M    +EP+ + + S+L AC     A L  L   K +   ID      NN   ++++ ++
Sbjct: 595 M---PVEPDAIAWGSLLSACRVHKNAELAELAAEKLLS--IDP-----NNSGAYSAIANV 644

Query: 380 YAKCGNIKAAEQVFDGMGYKTLA-----SWNAMISGL-------AMHGKADKALSLFSRM 427
           Y+ CG    A +++     K +      SW  + S +        +H + D   ++ +RM
Sbjct: 645 YSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARM 704

Query: 428 I----GEGLQPD 435
                G G  PD
Sbjct: 705 WEEIKGAGFVPD 716


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 263/607 (43%), Positives = 379/607 (62%), Gaps = 36/607 (5%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLES-DP-FVHTSLINMYAQNGELESARLVFNKS-S 192
           +L  CA   ++ +  +I A ++   + S DP  +    I + + +G L  + L+FN   S
Sbjct: 27  LLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLIFNHFLS 86

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
             +  +Y AL+  ++           F+   +      P+E T  +VL ACA +  +  G
Sbjct: 87  FPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEG 146

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCG---------------DLV------------ 285
             V   +  +G  SNL V N+L+D+Y K G               D+V            
Sbjct: 147 QKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFS 206

Query: 286 ----KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSV 340
               KAR +F+ + +++++SW+ MI GY     Y +A+ LFRQM  +  + PNDVT +SV
Sbjct: 207 GMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSV 266

Query: 341 LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT 400
           L ACA+LGALDLGKWIH +I +N  ++  + L  +L DMYAKCG +  A+ VF  M  + 
Sbjct: 267 LSACAHLGALDLGKWIHRFIRRNKIEVG-LFLGNALADMYAKCGCVLEAKGVFHEMHERD 325

Query: 401 LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFN 460
           + SW+ +I GLAM+G A++A + F+ MI +GL+P+DI+F+G+L+AC HAGL+D G +YF+
Sbjct: 326 VISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFD 385

Query: 461 AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRL 520
            M Q Y I+PK++HYGC+VDLL RAG  D+AE+L+ +M M+P+  +W +LLG CR++   
Sbjct: 386 MMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDA 445

Query: 521 ELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEV 580
           E GE V   +LEL+  + G+ V L+N+YA  GR DD A+ R R+ D    K PGCS IE+
Sbjct: 446 ERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEI 505

Query: 581 GSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHS 640
            + V+EF +GD  HPQS  IY M+ E+   ++ +G+ P T  V++++DEE KE ALS HS
Sbjct: 506 NNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHS 565

Query: 641 EKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGN 700
           EKLA+A+GLI+T  GTTIRIVKNLRVC +CH A K+ISKI  REI+ RDR+RFHHFKDG 
Sbjct: 566 EKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGK 625

Query: 701 CSCNDYW 707
           CSCNDYW
Sbjct: 626 CSCNDYW 632



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/439 (28%), Positives = 233/439 (53%), Gaps = 41/439 (9%)

Query: 29  QNQPSLALLSKCT---NMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALL 85
            ++ ++ LL +C    +M+ + ++ +QII + + +    +  +  I   S  G+L +++L
Sbjct: 20  NHRKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVL 79

Query: 86  VF-ETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPN--TYTFPFILKSCAK 142
           +F   +  PN   +N +++  S  ++    I ++   ++    PN   YTF  +LK+CA 
Sbjct: 80  IFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAG 139

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
           ++ + EG+++H  V K G ES+ FV  SL+++Y + G    A+ +F++  +RD VS+  L
Sbjct: 140 LAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTL 199

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFV-------------------------------- 230
           I+GY   G +D AR +FD M   E+N V                                
Sbjct: 200 ISGYCFSGMVDKARMVFDGM--MEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLA 257

Query: 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDL 290
           PN+ T+V+VLSACAH+G+L+LG W+   I  + +   L + NAL DMY+KCG +++A+ +
Sbjct: 258 PNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGV 317

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350
           F  + +RDVISW+++I G        EA   F +M++  +EPND++F+ +L AC + G +
Sbjct: 318 FHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLV 377

Query: 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMIS 409
           D G      + + +     +  +  ++D+ ++ G +  AE + + M  +  +  W A++ 
Sbjct: 378 DKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLG 437

Query: 410 GLAMHGKADKALSLFSRMI 428
           G  ++  A++   +  R++
Sbjct: 438 GCRIYKDAERGERVVWRIL 456


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 264/669 (39%), Positives = 387/669 (57%), Gaps = 77/669 (11%)

Query: 43  MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVF-ETIREPNQVIWNNI 101
           M+  K+ H+Q+I  GL +   +L  +I   A+ P GD+ YALL+   T   P   ++N  
Sbjct: 1   MKQFKEAHTQLIINGLTHPPPSLRPIISFSALDPSGDIDYALLLLLRTSTPPTVFLFNTT 60

Query: 102 IRGHSLSSSP---VVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLK 158
           IRG S +  P   + ++  +VRM +    PN +TF F+ + C+   A   G+Q H  V+K
Sbjct: 61  IRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIK 120

Query: 159 LGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQL 218
              E D FV  S+I                                 Y+  G L+DAR +
Sbjct: 121 NSFEMDVFVRNSIIRF-------------------------------YSVCGRLNDARWV 149

Query: 219 FDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMY 278
           FDE                           L++ +W                 N++ID  
Sbjct: 150 FDES------------------------SELDVVSW-----------------NSMIDGC 168

Query: 279 SKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
            + G++++A  LF  + +R+ ISWN+MI GY      KEAL LFR+M   + EPN    +
Sbjct: 169 IRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILV 228

Query: 339 SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
           SVL AC+ LGALD G W+H YI K   +++++ L  +LIDMYAKCG+I  A Q F     
Sbjct: 229 SVLSACSQLGALDHGCWVHCYIGKKCVRVDSI-LSAALIDMYAKCGSIDLAMQAFSTSRK 287

Query: 399 KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQY 458
           + ++++ A ISGLAM+G +++AL LF +M GEG+ PD ++++ VL AC+HAG ++ G  Y
Sbjct: 288 RDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHY 347

Query: 459 FNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           F +M   + I P+L HY CMVDLLGRAGL +EAE  + +M +KPD  IW +LLGACRV+G
Sbjct: 348 FASMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYG 407

Query: 519 RLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSI 578
             E+G+ V   L+E +  + G Y+LLSN+YA + + +D   +R  +  + + +VPGCS I
Sbjct: 408 NAEMGQRVGSLLVESDQNHDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLI 467

Query: 579 EVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSH 638
           EV   VHEF  GD+ H +++ IY M +EI   ++K G+  +T  V++D++EE KE  + H
Sbjct: 468 EVAGFVHEFFSGDRSHEKTEEIYLMWEEIVKEIKKFGYREETRAVVFDVEEEEKEAVIGH 527

Query: 639 HSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKD 698
           HSEKLA+A+G + TK G+T+RIVKN+R+C +CH A KL+SK+F R+I  RDR  FHHF++
Sbjct: 528 HSEKLAVAFGFLYTKSGSTLRIVKNIRICSDCHYAIKLVSKVFKRKIAIRDRKCFHHFEE 587

Query: 699 GNCSCNDYW 707
           G CSC DYW
Sbjct: 588 GLCSCKDYW 596


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 266/674 (39%), Positives = 404/674 (59%), Gaps = 7/674 (1%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L L  +  +++  +++H  II  G  +  F ++ ++ + A     D +Y +  FE ++  
Sbjct: 152 LQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKM--FERMQHK 209

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           + V W  ++ G++ +     A++  ++M  +G  P++ T   IL + A + A+  G+ IH
Sbjct: 210 DLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIH 269

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
            +  + G ES   V  +L++MY + G    ARLVF     +  VS+  +I G A  G  +
Sbjct: 270 GYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESE 329

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           +A   F  + + +E  VP   T++ VL ACA++G LE G +V  L++   L SN+ V N+
Sbjct: 330 EAFATF--LKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNS 387

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           LI MYSKC  +  A  +F ++EK +V +WN MI GY      KEAL LF  M    I+ +
Sbjct: 388 LISMYSKCKRVDIAASIFNNLEKTNV-TWNAMILGYAQNGCVKEALNLFCMMQSQGIKLD 446

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
             T + V+ A A        KWIH    +     NNV + T+L+DMYAKCG IK A ++F
Sbjct: 447 CFTLVGVITALADFSVNRQAKWIHGLAVRACMD-NNVFVSTALVDMYAKCGAIKTARKLF 505

Query: 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLD 453
           D M  + + +WNAMI G   HG   + L LF+ M    ++P+DITF+ V+SAC+H+G ++
Sbjct: 506 DMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVE 565

Query: 454 IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
            G   F +M +DY + P + HY  MVDLLGRAG  D+A   ++ M +KP  ++  ++LGA
Sbjct: 566 EGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGA 625

Query: 514 CRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVP 573
           C++H  +ELGE  A+ L +L+P+  G +VLL+N+YA    WD VA +RT + DKG+ K P
Sbjct: 626 CKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTP 685

Query: 574 GCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKE 633
           GCS +E+ + +H F  G   HP+SK IY  L+ +   ++ +G+VPD   + +D++E+ K+
Sbjct: 686 GCSWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPDPDSI-HDVEEDVKK 744

Query: 634 GALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRF 693
             LS HSE+LAIA+GL++T PGTT+ I KNLRVCG+CH  TK IS +  REII RD  RF
Sbjct: 745 QLLSSHSERLAIAFGLLNTSPGTTLHIRKNLRVCGDCHDTTKYISLVTGREIIVRDLRRF 804

Query: 694 HHFKDGNCSCNDYW 707
           HHFK+G+CSC DYW
Sbjct: 805 HHFKNGSCSCGDYW 818



 Score =  254 bits (649), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 179/583 (30%), Positives = 297/583 (50%), Gaps = 56/583 (9%)

Query: 17  FPPSSDPPYKLLQNQ-PSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVS 75
           F  S+  P ++  ++ PS+ LL  CT+ + + Q+   IIK G +N     +K+I +    
Sbjct: 33  FYQSNSIPTRVYSHRHPSVVLLENCTSKKELYQILPFIIKNGFYNEHLFQTKVISL--FC 90

Query: 76  PFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPF 135
            FG  S A  VFE +     V+++ +++G++ +SS   A+ F++RM+          +  
Sbjct: 91  KFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYAC 150

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           +L+ C +   + +G++IH  ++  G ES+ FV T+++++YA+  ++++A  +F +   +D
Sbjct: 151 LLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKD 210

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
            VS+T L+ GYA  G+   A QL  +M  +E    P+  T+V++L A A M +L +G  +
Sbjct: 211 LVSWTTLVAGYAQNGHAKRALQLVLQM--QEAGQKPDSVTLVSILPAVADMKALRIGRSI 268

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
                  G  S ++VTNAL+DMY KCG    AR +F+ +  + V+SWN MI G     + 
Sbjct: 269 HGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGES 328

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN-NVSLWT 374
           +EA   F +ML     P  VT + VL ACA LG L+ G ++H  +DK   KL+ NVS+  
Sbjct: 329 EEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDK--LKLDSNVSVMN 386

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
           SLI MY+KC  +  A  +F+ +  KT  +WNAMI G A +G   +AL+LF  M  +G++ 
Sbjct: 387 SLISMYSKCKRVDIAASIFNNL-EKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKL 445

Query: 435 DDITFVGVLSAC-----------------------------------NHAGLLDIGRQYF 459
           D  T VGV++A                                       G +   R+ F
Sbjct: 446 DCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLF 505

Query: 460 NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME---MKPDAAIWTSLLGACRV 516
           + M + + I+     +  M+D  G  G+  E   L   M+   +KP+   + S++ AC  
Sbjct: 506 DMMQERHVIT-----WNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSH 560

Query: 517 HGRLELGESVAKHLLE---LEPENPGAYVLLSNMYAGAGRWDD 556
            G +E G  + K + E   LEP     Y  + ++   AG+ DD
Sbjct: 561 SGFVEEGLLLFKSMQEDYYLEP-TMDHYSAMVDLLGRAGQLDD 602


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 267/672 (39%), Positives = 405/672 (60%), Gaps = 8/672 (1%)

Query: 38  SKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVI 97
           +K   ++  KQ+H+ +I  G     F  + L+ +   S  G+L +AL +F+T+ + N V 
Sbjct: 16  AKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNM--YSKCGELDHALKLFDTMPQRNLVS 73

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
           W  +I G S +S    AI+ +  M + G VP  + F   +++CA + +I  GKQ+H   L
Sbjct: 74  WTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLAL 133

Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ 217
           K G+ S+ FV ++L +MY++ G +  A  VF +   +D VS+TA+I GY+  G  ++A  
Sbjct: 134 KFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALL 193

Query: 218 LFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDM 277
            F +M   +E    ++  + + L AC  + + + G  V S +   G  S++ V NAL DM
Sbjct: 194 AFKKMI--DEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDM 251

Query: 278 YSKCGDLVKARDLFE-SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVT 336
           YSK GD+  A ++F    E R+V+S+  +I GY  T   ++ L +F ++ +  IEPN+ T
Sbjct: 252 YSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFT 311

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDK-NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
           F S++ ACA   AL+ G  +HA + K N  +   VS  + L+DMY KCG ++ A Q FD 
Sbjct: 312 FSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVS--SILVDMYGKCGLLEHAIQAFDE 369

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
           +G  T  +WN+++S    HG    A+  F RM+  G++P+ ITF+ +L+ C+HAGL++ G
Sbjct: 370 IGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEG 429

Query: 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACR 515
             YF +M + Y + P  +HY C++DLLGRAG   EA+  +  M  +P+A  W S LGACR
Sbjct: 430 LDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACR 489

Query: 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGC 575
           +HG  E+G+  A+ L++LEP+N GA VLLSN+YA   +W+DV ++R R+ D  +KK+PG 
Sbjct: 490 IHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGY 549

Query: 576 SSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGA 635
           S ++VG   H F   D  H +   IYE LD +   ++ +G+VP T  V  DMD+  KE  
Sbjct: 550 SWVDVGYKTHVFGAEDWSHXRKSAIYEKLDXLLDQIKAAGYVPXTDSVPLDMDDXMKEKL 609

Query: 636 LSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHH 695
           L  HSE++A+A+ LIS   G  I + KNLRVC +CHSA K ISK+  R+II RD +RFHH
Sbjct: 610 LHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHH 669

Query: 696 FKDGNCSCNDYW 707
           F DG+CSC DYW
Sbjct: 670 FTDGSCSCGDYW 681



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 206/392 (52%), Gaps = 8/392 (2%)

Query: 129 NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF 188
           +T     ++++ AK   +  GKQ+HA ++  G     F+   L+NMY++ GEL+ A  +F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 189 NKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS 248
           +    R+ VS+TA+I+G +      +A + F  M I  E  VP +    + + ACA +GS
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGE--VPTQFAFSSAIRACASLGS 121

Query: 249 LELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGG 308
           +E+G  +  L    G+GS L V + L DMYSKCG +  A  +FE +  +D +SW  MI G
Sbjct: 122 IEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDG 181

Query: 309 YTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN 368
           Y+   +++EAL+ F++M+   +  +     S L AC  L A   G+ +H+ + K   + +
Sbjct: 182 YSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFE-S 240

Query: 369 NVSLWTSLIDMYAKCGNIKAAEQVFD-GMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
           ++ +  +L DMY+K G++++A  VF      + + S+  +I G     + +K LS+F  +
Sbjct: 241 DIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVEL 300

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQ-YFNAMIQDYKISPKLQHYGCMVDLLGRAG 486
             +G++P++ TF  ++ AC +   L+ G Q +   M  ++   P +     +VD+ G+ G
Sbjct: 301 RRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSI--LVDMYGKCG 358

Query: 487 LFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           L + A      +   P    W SL+     HG
Sbjct: 359 LLEHAIQAFDEIG-DPTEIAWNSLVSVFGQHG 389



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 158/349 (45%), Gaps = 36/349 (10%)

Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD 298
           V+   A    L  G  + +L+   G      +TN L++MYSKCG+L  A  LF+++ +R+
Sbjct: 11  VIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRN 70

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
           ++SW  MI G +  S + EA+  F  M      P    F S + ACA LG++++GK +H 
Sbjct: 71  LVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHC 130

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKAD 418
              K     + + + ++L DMY+KCG +  A +VF+ M  K   SW AMI G +  G+ +
Sbjct: 131 LALKFGIG-SELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFE 189

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF---------------NAMI 463
           +AL  F +MI E +  D       L AC        GR                  NA+ 
Sbjct: 190 EALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALT 249

Query: 464 QDYKISPKLQ----------------HYGCMVDLLGRAGLFDEAEAL---LKTMEMKPDA 504
             Y  +  ++                 Y C++D        ++  ++   L+   ++P+ 
Sbjct: 250 DMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNE 309

Query: 505 AIWTSLLGACRVHGRLELGESVAKHLLELE-PENPGAYVLLSNMYAGAG 552
             ++SL+ AC     LE G  +   ++++   E+P    +L +MY   G
Sbjct: 310 FTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCG 358


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 274/640 (42%), Positives = 382/640 (59%), Gaps = 86/640 (13%)

Query: 80  LSYALLVFETIR--EPNQVIWNNIIRGHSLSSSPV---VAIKFYVRMILSGFVPNTYTFP 134
           +SYA  +F  IR  +    +WN IIR    + SP      I  Y RM      P+ +TFP
Sbjct: 7   ISYANPIFH-IRHLKLESFVWNIIIRAIVHNVSPPQRHSPISVYFRMRHHCVSPDFHTFP 65

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
           F+L S      +  G++ HA +L  GL+ DPFV TSL+NMY+                  
Sbjct: 66  FLLPSFHNPIHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYS------------------ 107

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
                        S G L  A ++FDE                                 
Sbjct: 108 -------------SCGDLSSALRIFDE--------------------------------- 121

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
                    +  +L   N++++ Y+K G +  AR LF+ + +R+VISW+ +I GY     
Sbjct: 122 --------SVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGK 173

Query: 315 YKEALMLFRQML-----QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNN 369
           YKEAL LFR+M      +  + PN  T  +VL AC  LGAL+ GKW+H+YIDK   +++ 
Sbjct: 174 YKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEID- 232

Query: 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT-LASWNAMISGLAMHGKADKALSLFSRMI 428
           + L T+LIDMYAKCG+++ A++VFD +G K  + +++AMI  LAM+G  D+   +FS M 
Sbjct: 233 IVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQVFSEMT 292

Query: 429 -GEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
               + P+ +TFVG+L AC H GL++ G+ YF  M +++ I+P +QHYGCMVDL GR+GL
Sbjct: 293 TSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRSGL 352

Query: 488 FDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547
             EAE+ + +M M+PD  IW SLL   R+ G ++  E   K L+EL+P N GAYVLLSN+
Sbjct: 353 IKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNV 412

Query: 548 YAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEI 607
           YA  GRW +V  IR  +  KG+KKVPGCS +EV  VVHEF+VGD+   +S+ IY ML+EI
Sbjct: 413 YAKTGRWIEVKRIRHEMEVKGIKKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLEEI 472

Query: 608 DALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVC 667
              L ++G+V DT EVL D++E+ KE ALS+HSEKLAIA+ L+ T+PGT +RI+KNLR+C
Sbjct: 473 MQRLREAGYVSDTKEVLLDLEEKDKEMALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRIC 532

Query: 668 GNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           G+CH   K+ISK+F+REI+ RD NRFHHF DG+CSC D+W
Sbjct: 533 GDCHLVMKMISKLFSREIVVRDCNRFHHFSDGSCSCRDFW 572



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 151/320 (47%), Gaps = 42/320 (13%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLV-------------------- 86
           ++ H+QI+  GL    F  + L+ +   S  GDLS AL +                    
Sbjct: 81  QRTHAQILLFGLDKDPFVRTSLLNM--YSSCGDLSSALRIFDESVSKDLPAWNSVVNAYA 138

Query: 87  -----------FETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG----FV-PNT 130
                      F+ + E N + W+ +I G+ +      A+  +  M L      FV PN 
Sbjct: 139 KAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNK 198

Query: 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK 190
           +T   +L +C ++ A+ +GK +H+++ K G+E D  + T+LI+MYA+ G LE A+ VF+ 
Sbjct: 199 FTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDA 258

Query: 191 -SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL 249
             S +D  +Y+A+I   A  G  D+  Q+F EM     N  PN  T V +L AC H G +
Sbjct: 259 LGSKKDVKAYSAMICCLAMYGLTDECFQVFSEMTT-SNNINPNSVTFVGILGACVHRGLI 317

Query: 250 ELG-NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIG 307
             G ++   + E  G+  ++     ++D+Y + G + +A     S+  + DV+ W  ++ 
Sbjct: 318 NKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLS 377

Query: 308 GYTHTSDYKEALMLFRQMLQ 327
           G     D K      +++++
Sbjct: 378 GSRMLGDIKTCEGALKRLIE 397


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 272/728 (37%), Positives = 408/728 (56%), Gaps = 71/728 (9%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSL 107
           Q H++I+K+G  N  +  +KLI   + S +   + A LV ++I +P    ++++I   + 
Sbjct: 36  QAHARILKSGAQNDGYISAKLIA--SYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTK 93

Query: 108 SSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFV 167
           +     +I  + RM   G +P+++  P + K CA++SA   GKQIH      GL+ D FV
Sbjct: 94  AKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFV 153

Query: 168 HTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM----- 222
             S+ +MY + G +  AR VF++ S +D V+ +AL+  YA +G L++  ++  EM     
Sbjct: 154 QGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGI 213

Query: 223 ----------------------------PIREENFVPNESTVVTVLSACAHMGSLELGNW 254
                                        I    F P++ TV +VL +      L +G  
Sbjct: 214 EANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRL 273

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLV----------------------------- 285
           +   +   GL  +  V +A+IDMY K G +                              
Sbjct: 274 IHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGL 333

Query: 286 --KARDLFESIEKR----DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS 339
             KA ++FE  +++    +V+SW  +I G        EAL LFR+M  + ++PN VT  S
Sbjct: 334 VDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPS 393

Query: 340 VLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK 399
           +LPAC  + AL  G+  H +  + H  L+NV + ++LIDMYAKCG I  ++ VF+ M  K
Sbjct: 394 MLPACGNIAALGHGRSTHGFAVRVHL-LDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK 452

Query: 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF 459
            L  WN++++G +MHGKA + +S+F  ++   L+PD I+F  +LSAC   GL D G +YF
Sbjct: 453 NLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYF 512

Query: 460 NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
             M ++Y I P+L+HY CMV+LLGRAG   EA  L+K M  +PD+ +W +LL +CR+   
Sbjct: 513 KMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNN 572

Query: 520 LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIE 579
           ++L E  A+ L  LEPENPG YVLLSN+YA  G W +V +IR ++   G+KK PGCS I+
Sbjct: 573 VDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQ 632

Query: 580 VGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHH 639
           V + V+  L GDK HPQ   I E +DEI   + KSG  P+    L+D++E+ +E  L  H
Sbjct: 633 VKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGH 692

Query: 640 SEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDG 699
           SEKLA+ +GL++T  GT ++++KNLR+CG+CH+  K IS    REI  RD NRFHHFKDG
Sbjct: 693 SEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDG 752

Query: 700 NCSCNDYW 707
            CSC D+W
Sbjct: 753 ICSCGDFW 760


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 256/676 (37%), Positives = 409/676 (60%), Gaps = 10/676 (1%)

Query: 35  ALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ++L  C  + ++++   +H  I K G+       + L+ +     F  L     +F+ + 
Sbjct: 221 SVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSM--YCKFNGLIDGRRIFDKMV 278

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             + V WN +I G+S       +IK ++ M+ + F P+  T   IL++C  +  +  GK 
Sbjct: 279 LRDAVSWNTMICGYSQVGLYEESIKLFMEMV-NQFKPDLLTITSILQACGHLGDLEFGKY 337

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +H +++  G E D      LINMYA+ G L +++ VF+    +D+VS+ ++I  Y   G 
Sbjct: 338 VHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGS 397

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
            D+A +LF  M   + +  P+  T V +LS    +G L LG  +   +   G  SN+ V+
Sbjct: 398 FDEAMKLFKMM---KTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVS 454

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N L+DMY+KCG++  +  +FE+++ RD+I+WN +I    H+ D    L +  +M    + 
Sbjct: 455 NTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVT 514

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+  T LS+LP C+ L A   GK IH  I K   + ++V +   LI+MY+KCG+++ + Q
Sbjct: 515 PDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLE-SDVPVGNVLIEMYSKCGSLRNSFQ 573

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VF  M  K + +W A+IS   M+G+  KA+  F  M   G+ PD + FV ++ AC+H+GL
Sbjct: 574 VFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGL 633

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           ++ G  YF+ M +DYKI P+++HY C+VDLL R+ L D+AE  + +M +KPD++IW +LL
Sbjct: 634 VEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALL 693

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
            ACR+ G  E+ E V++ ++EL P++ G YVL+SN+YA  G+WD V +IR  +  +G+KK
Sbjct: 694 SACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKK 753

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
            PGCS +E+ + V+ F  G K   Q + + ++L  +  L+ K G++ +   VL+D+DE+ 
Sbjct: 754 DPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDE 813

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           K   L  HSE+LAIA+GL++TKPGT ++++KNLRVC +CH+ TK ISKI  RE++ RD N
Sbjct: 814 KRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDAN 873

Query: 692 RFHHFKDGNCSCNDYW 707
           RFH FKDG CSC DYW
Sbjct: 874 RFHVFKDGACSCGDYW 889



 Score =  272 bits (696), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 160/483 (33%), Positives = 270/483 (55%), Gaps = 11/483 (2%)

Query: 33  SLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           S AL S  T  Q + ++HS II  GLH++    +KLI     + F D + +  VF     
Sbjct: 20  SRALASAATTTQ-LHKLHSLIITLGLHHSVIFSAKLIA--KYAHFRDPTSSFSVFRLASP 76

Query: 93  PNQV-IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
            N V +WN+IIR  + +     A+  Y         P+TYTFP ++ +CA +      K 
Sbjct: 77  SNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKS 136

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IH  VL +G  SD ++  +LI+MY +  +L+ AR VF +  LRD VS+ +LI+GY + GY
Sbjct: 137 IHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGY 196

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
            ++A +++     R    VP+  T+ +VL AC  +GS+E G+ +  LIE  G+  ++ V 
Sbjct: 197 WNEALEIY--YRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVN 254

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N L+ MY K   L+  R +F+ +  RD +SWN MI GY+    Y+E++ LF +M+ +  +
Sbjct: 255 NGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMV-NQFK 313

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+ +T  S+L AC +LG L+ GK++H Y+  +  + +  +    LI+MYAKCGN+ A+++
Sbjct: 314 PDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTAS-NILINMYAKCGNLLASQE 372

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VF GM  K   SWN+MI+    +G  D+A+ LF +M+   ++PD +T+V +LS     G 
Sbjct: 373 VFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGD 431

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           L +G++  +  +     +  +     +VD+  + G   ++  + + M+ + D   W +++
Sbjct: 432 LHLGKE-LHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTII 489

Query: 512 GAC 514
            +C
Sbjct: 490 ASC 492



 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 148/490 (30%), Positives = 265/490 (54%), Gaps = 16/490 (3%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K +H +++  G  +  +  + LI++     F DL  A  VFE +   + V WN++I G++
Sbjct: 135 KSIHDRVLDMGFGSDLYIGNALIDM--YCRFNDLDKARKVFEEMPLRDVVSWNSLISGYN 192

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +     A++ Y R    G VP++YT   +L++C  + ++ EG  IH  + K+G++ D  
Sbjct: 193 ANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVI 252

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V+  L++MY +   L   R +F+K  LRDAVS+  +I GY+  G  +++ +LF EM    
Sbjct: 253 VNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMV--- 309

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
             F P+  T+ ++L AC H+G LE G +V   +   G   +   +N LI+MY+KCG+L+ 
Sbjct: 310 NQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLA 369

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           ++++F  ++ +D +SWN MI  Y     + EA+ LF+ M++++++P+ VT++ +L     
Sbjct: 370 SQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQ 428

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
           LG L LGK +H  + K     +N+ +  +L+DMYAKCG +  + +VF+ M  + + +WN 
Sbjct: 429 LGDLHLGKELHCDLAKMGFN-SNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNT 487

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ--YFNAMIQ 464
           +I+        +  L + SRM  EG+ PD  T + +L  C+   LL   RQ    +  I 
Sbjct: 488 IIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCS---LLAAKRQGKEIHGCIF 544

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGE 524
              +   +     ++++  + G    +  + K M+ K D   WT+L+ AC ++G    G+
Sbjct: 545 KLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTALISACGMYGE---GK 600

Query: 525 SVAKHLLELE 534
              +   E+E
Sbjct: 601 KAVRAFGEME 610



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 130/458 (28%), Positives = 212/458 (46%), Gaps = 38/458 (8%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           F  I ++ A  +  ++  ++H+ ++ LGL         LI  YA   +  S+  VF  +S
Sbjct: 16  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLAS 75

Query: 193 LRDAVS-YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL 251
             + V  + ++I      G   +A  L+ E   +     P+  T  +V++ACA +   E+
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSE--TQRIRLQPDTYTFPSVINACAGLLDFEM 133

Query: 252 GNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311
              +   +   G GS+L++ NALIDMY +  DL KAR +FE +  RDV+SWN +I GY  
Sbjct: 134 AKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNA 193

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
              + EAL ++ +     + P+  T  SVL AC  LG+++ G  IH  I+K   K  +V 
Sbjct: 194 NGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIK-KDVI 252

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
           +   L+ MY K   +    ++FD M  +   SWN MI G +  G  ++++ LF  M+ + 
Sbjct: 253 VNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ- 311

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD-YKISPKLQH---------------- 474
            +PD +T   +L AC H G L+ G+   + MI   Y+      +                
Sbjct: 312 FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQ 371

Query: 475 -------------YGCMVDLLGRAGLFDEAEALLKTM--EMKPDAAIWTSLLGACRVHGR 519
                        +  M+++  + G FDEA  L K M  ++KPD+  +  LL      G 
Sbjct: 372 EVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGD 431

Query: 520 LELGESVAKHLLELE-PENPGAYVLLSNMYAGAGRWDD 556
           L LG+ +   L ++    N      L +MYA  G   D
Sbjct: 432 LHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGD 469


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 275/709 (38%), Positives = 400/709 (56%), Gaps = 67/709 (9%)

Query: 63  FALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI 122
           F  + L+ + A S  G L+ A  VF  + E + V W  ++ G + +     AIK  + M 
Sbjct: 99  FTWNSLLSMFAKS--GRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 123 LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELE 182
             GF P  +T   +L SCA   A + G+++H+ V+KLGL S   V  S++NMY + G+ E
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSE 216

Query: 183 SARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR----------------- 225
           +A  VF +  +R   S+ A+++     G +D A  LF+ MP R                 
Sbjct: 217 TATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGL 276

Query: 226 -------------EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
                        E +  P+E T+ +VLSACA++G++ +G  V + I    +  N  VTN
Sbjct: 277 DAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN 336

Query: 273 ALIDMYSKCG---------------------------------DLVKARDLFESIEKRDV 299
           ALI  Y+K G                                 D+  AR++F  +  RDV
Sbjct: 337 ALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDV 396

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
           ++W  MI GY       EA+ LFR M+    EPN  T  +VL  CA L  LD GK IH  
Sbjct: 397 VAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCR 456

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-KTLASWNAMISGLAMHGKAD 418
             ++  + ++ S+  ++I MYA+ G+   A ++FD + + K   +W +MI  LA HG+ +
Sbjct: 457 AIRSLLEQSS-SVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGE 515

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478
           +A+ LF  M+  G++PD IT+VGVLSAC+HAG ++ G++Y++ +  +++I+P++ HY CM
Sbjct: 516 EAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACM 575

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
           VDLL RAGLF EA+  ++ M ++PDA  W SLL ACRVH   EL E  A+ LL ++P N 
Sbjct: 576 VDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNS 635

Query: 539 GAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSK 598
           GAY  ++N+Y+  GRW D A I     +K ++K  G S   + S +H F   D VHPQ  
Sbjct: 636 GAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRD 695

Query: 599 HIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTI 658
            +Y M   +   ++ +GFVPD   VL+D+D+E KE  LS HSEKLAIA+GLIST   TT+
Sbjct: 696 AVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTL 755

Query: 659 RIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           R++KNLRVC +CH+A K ISK+ +REII RD  RFHHF+DG CSC DYW
Sbjct: 756 RVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/411 (24%), Positives = 170/411 (41%), Gaps = 99/411 (24%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           +  +L+ C   +    G+ IHA  +K GL +  ++  +L++ Y +               
Sbjct: 29  YARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETA------------- 75

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
                            G L DAR+LFDE+P+   N                        
Sbjct: 76  --------------GGAGGLRDARRLFDEIPLARRNVF---------------------- 99

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
            W                 N+L+ M++K G L  AR +F  + +RD +SW VM+ G    
Sbjct: 100 TW-----------------NSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRA 142

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK---------- 362
             + EA+     M      P   T  +VL +CA   A  +G+ +H+++ K          
Sbjct: 143 GRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVA 202

Query: 363 --------------------NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
                                   + +VS W +++ +    G +  AE +F+ M  +++ 
Sbjct: 203 NSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIV 262

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGE-GLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
           SWNAMI+G   +G   KAL LFSRM+ E  + PD+ T   VLSAC + G + IG+Q  +A
Sbjct: 263 SWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQ-VHA 321

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL-KTMEMKPDAAIWTSLL 511
            I   +++   Q    ++    ++G  + A  ++ ++ME   +   +T+LL
Sbjct: 322 YILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALL 372



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 109/432 (25%), Positives = 190/432 (43%), Gaps = 73/432 (16%)

Query: 30  NQPSLALLS---KCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLV 86
           +Q + AL+S   K  +++N +++  Q ++T L+   F  + L+E       GD+  A  +
Sbjct: 332 SQVTNALISTYAKSGSVENARRIMDQSMETDLNVISF--TALLE--GYVKIGDMESAREM 387

Query: 87  FETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAI 146
           F  +   + V W  +I G+  +     AI  +  MI  G  PN+YT   +L  CA ++ +
Sbjct: 388 FGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACL 447

Query: 147 SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-DAVSYTALITG 205
             GKQIH   ++  LE    V  ++I MYA++G    AR +F++   R + +++T++I  
Sbjct: 448 DYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVA 507

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG-HGL 264
            A  G  ++A  LF+EM        P+  T V VLSAC+H G +  G      I+  H +
Sbjct: 508 LAQHGQGEEAVGLFEEML--RAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQI 565

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
              +     ++D+ ++ G       LF                         EA    R+
Sbjct: 566 APEMSHYACMVDLLARAG-------LF------------------------SEAQEFIRR 594

Query: 325 MLQSNIEPNDVTFLSVLPAC-----AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
           M    +EP+ + + S+L AC     A L  L   K +   ID      NN   ++++ ++
Sbjct: 595 M---PVEPDAIAWGSLLSACRVHKNAELAELAAEKLLS--IDP-----NNSGAYSAIANV 644

Query: 380 YAKCGNIKAAEQVFDGMGYKTLA-----SWNAMISGL-------AMHGKADKALSLFSRM 427
           Y+ CG    A +++     K +      SW  + S +        +H + D   ++ +RM
Sbjct: 645 YSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARM 704

Query: 428 I----GEGLQPD 435
                G G  PD
Sbjct: 705 WEEIKGAGFVPD 716


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 261/615 (42%), Positives = 379/615 (61%), Gaps = 13/615 (2%)

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
           WN  +R  +     + A+  Y +M+  G  PN +TFPF LKSCA +S    G Q H  + 
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVF--NKSSLRDAVSYTALITGYASRGYLDDA 215
           K+G   +PFV T LI+MY +   +++AR VF  N  S +  V Y AL++GY S     DA
Sbjct: 68  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDA 127

Query: 216 RQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV-CSLIEGHGLGSNLHVTNAL 274
             LF +M   EE    N  T++ ++ AC    +LELG+ + CS ++ +G  S++ V N  
Sbjct: 128 VLLFRQM--NEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLK-YGFDSDVSVVNCF 184

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
           I MY KCG +  A+ LF+ +  + +ISWN M+ GY         L L+R M  + + P+ 
Sbjct: 185 ITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDP 244

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           VT + VL +CA LGA  +G  +   +  +    +N  L  +LI+MYA+CGN+  A+ VFD
Sbjct: 245 VTLVGVLSSCANLGAQSVGHEVEFKMQASGFT-SNPFLNNALINMYARCGNLTKAQAVFD 303

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
           GM  +TL SW A+I G  MHG  + A+ LF  MI  G++PD   FV VLSAC+HAGL D 
Sbjct: 304 GMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQ 363

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
           G +YF  M ++Y++ P  +HY CMVDLLGRAG   EA+ L+++M +KPD A+W +LLGAC
Sbjct: 364 GLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGAC 423

Query: 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPG 574
           ++H  +EL E   + ++ELEPEN G YVLLSN+Y+ A     V  IR  + +K +KK PG
Sbjct: 424 KIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPG 483

Query: 575 CSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEG 634
           CS +E+   VH F+VGD+ H QS  IY +L+E++A++ +    P+      + +E  K+G
Sbjct: 484 CSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEKD----NREESNKDG 539

Query: 635 --ALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
              +  HSEKLA+A+GL++T  G  + I+KNLR+C +CH   K++SKI +R++  RD  R
Sbjct: 540 FTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDATR 599

Query: 693 FHHFKDGNCSCNDYW 707
           FHHF++G+CSC DYW
Sbjct: 600 FHHFRNGSCSCKDYW 614



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 130/450 (28%), Positives = 229/450 (50%), Gaps = 23/450 (5%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ--VIWNNIIRGH 105
           Q H QI K G     F  + LI +       D   A  VFE      +  V +N ++ G+
Sbjct: 61  QFHGQITKVGCVFEPFVQTGLISMYCKGSLVD--NARKVFEENFHSRKLTVCYNALVSGY 118

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
             +S    A+  + +M   G   N+ T   ++ +C     +  G  +H   LK G +SD 
Sbjct: 119 VSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDV 178

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
            V    I MY + G +  A+ +F++  ++  +S+ A+++GYA  G   +  +L+  M + 
Sbjct: 179 SVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMN 238

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
             +  P+  T+V VLS+CA++G+  +G+ V   ++  G  SN  + NALI+MY++CG+L 
Sbjct: 239 GVH--PDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLT 296

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
           KA+ +F+ + +R ++SW  +IGGY      + A+ LF++M++S IEP+   F+ VL AC+
Sbjct: 297 KAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACS 356

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT-LASW 404
           + G  D G      + +N+Q       ++ ++D+  + G +K A+ + + M  K   A W
Sbjct: 357 HAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVW 416

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS-----ACNHAGLLDIGRQYF 459
            A++    +H   + A   F R+I   L+P++I +  +LS     A N  G+L I     
Sbjct: 417 GALLGACKIHKNVELAELAFERVI--ELEPENIGYYVLLSNIYSNANNSKGVLRI----- 469

Query: 460 NAMIQDYKISPKLQHYGC-MVDLLGRAGLF 488
             M+++ K+    +  GC  V+L GR   F
Sbjct: 470 RIMMKEKKLK---KDPGCSYVELKGRVHPF 496



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 172/366 (46%), Gaps = 44/366 (12%)

Query: 34  LALLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           L L+  C +  N++    +H   +K G  +    ++  I +      G ++YA  +F+ +
Sbjct: 147 LGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITM--YMKCGSVNYAQKLFDEM 204

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
                + WN ++ G++ +      ++ Y  M ++G  P+  T   +L SCA + A S G 
Sbjct: 205 PVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGH 264

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           ++   +   G  S+PF++ +LINMYA+ G L  A+ VF+    R  VS+TA+I GY   G
Sbjct: 265 EVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHG 324

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLH 269
           + + A QLF EM IR     P+ +  V VLSAC+H G  + G  +   +   + L     
Sbjct: 325 HGEIAVQLFKEM-IR-SGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPE 382

Query: 270 VTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
             + ++D+  + G L +A+ L ES+  K D   W  ++G      + + A + F ++++ 
Sbjct: 383 HYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIE- 441

Query: 329 NIEPNDVTFLSVL----------------------------PACAYLGALDLGKWIHAYI 360
            +EP ++ +  +L                            P C+Y   ++L   +H +I
Sbjct: 442 -LEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSY---VELKGRVHPFI 497

Query: 361 --DKNH 364
             D+NH
Sbjct: 498 VGDRNH 503


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 264/707 (37%), Positives = 423/707 (59%), Gaps = 12/707 (1%)

Query: 3   LPPSSLTLSPSILHFPPSSDPPYKLLQ-NQPSLALLSKCTNMQNIKQVHSQIIKTGLHNT 61
           +PP +      +     SS+P  +L    Q   ++L K  +++ ++Q+H+QII +GL + 
Sbjct: 1   MPPVNFNFYRHL-----SSNPTQRLCPLAQSHASILRKLKDLKPLQQIHAQIITSGLTHN 55

Query: 62  QFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRM 121
            F  + L+   A    G L+ A  +F      N V W  +I G + +   V AI  +  M
Sbjct: 56  TFLSNSLMN--AYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREM 113

Query: 122 ILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGEL 181
            +  F PN  T   +L + A +  I   K +H   ++ G E + FV T+L++MY++ G +
Sbjct: 114 TMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCM 173

Query: 182 ESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLS 241
             AR +F   S R+ VS+ A+++GY+  G+ ++A  LF+ M  R +  + +  T+++++ 
Sbjct: 174 GVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLM--RRKGLLVDFYTIMSLIP 231

Query: 242 ACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVIS 301
           A   +G L++G  +   I   G  ++ H+  AL+D+Y     +  A  +F  +  +DV +
Sbjct: 232 ASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAA 291

Query: 302 WNVMIGGYTHTSDYKEALMLFRQMLQ-SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           W +M+ G++    +  A+  F +ML   N++ + +  + +L +C++ GAL  G+ +HA  
Sbjct: 292 WTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALA 351

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
            K     NN+ + +++IDMYA CGN++ A++ F GMG K +  WNAMI+G  M+G    A
Sbjct: 352 IKTCFA-NNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDA 410

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
           + LF +M G GL PD+ TFV VL AC+HAG++  G Q F  M++     P LQHY C++D
Sbjct: 411 IDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVID 470

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540
           +LGRAG  D A + +  M  +PD  ++++LLGACR+HG ++LG  +++ + E+EP + G 
Sbjct: 471 ILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGY 530

Query: 541 YVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHI 600
           YVLLSNMYA AG W+ V   R  L  K +KK PG SSIE+   ++ F+ G+K HPQ   I
Sbjct: 531 YVLLSNMYALAGNWEGVKMTRASLRSKRLKKDPGFSSIEINQEIYTFMAGEKDHPQYFKI 590

Query: 601 YEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRI 660
             +L  +   ++K+G+VP+T+ +L D+ ++ K+  L HHSEK+AIA+GL+ TKPGT IRI
Sbjct: 591 EGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPGTIIRI 650

Query: 661 VKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            KNLR C +CHSA+K +SK+F R ++ +D NRFH F+DG CSC DYW
Sbjct: 651 TKNLRTCNDCHSASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 260/677 (38%), Positives = 402/677 (59%), Gaps = 45/677 (6%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L+LL+ C ++   KQ+H+ ++K GL +  F   KL+  CA+S    L YA  +F     P
Sbjct: 9   LSLLNICKSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPNP 68

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVP-NTYTFPFILKSCAKISAISEGKQI 152
           +  + N +IRG   S  P  ++  ++ M  + F P ++++F FI+K+ A + ++  G Q+
Sbjct: 69  DVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQL 128

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H   L  GL++  FV T+LI+MY + G +  AR VF++    +A+++ A++T     G +
Sbjct: 129 HCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDM 188

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
              R+LFD MP+R                                         NL   N
Sbjct: 189 KGGRELFDLMPVR-----------------------------------------NLMSWN 207

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            ++  Y+K G+L  AR++F  +  +D +SW+ MI G+ H   ++EA   FR++ +  + P
Sbjct: 208 VMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRP 267

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N+ +   VL ACA  GAL+ GK +H +I+K+      VS+  +L+D Y+KCGN+  A+ V
Sbjct: 268 NETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWI-VSVNNALLDTYSKCGNVLMAQLV 326

Query: 393 FDG-MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           F+  M  + + SW +M++ LAMHG  ++A+ +F +M   G++PD+I F+ +L AC+HAGL
Sbjct: 327 FERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGL 386

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           ++ G +YF+ M   Y I P ++HYGCMVDL GRAG   +A   +  M +   A IW +LL
Sbjct: 387 VEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLL 446

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
           GAC +HG ++L E V + L EL+P N   +VLLSN YA AG+W D A++R  + ++ + K
Sbjct: 447 GACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAYAVAGKWKDAASVRRSMTEQRITK 506

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE-KSGFVPDTSEVLYDMDEE 630
            PG S IEV  +++ FL G K +  ++  Y+ L EI   L  + G+VP+   VL+D++EE
Sbjct: 507 TPGWSMIEVDKIMYTFLAGTKQYKITEEAYKKLKEIIRRLRVEGGYVPEIGRVLHDIEEE 566

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KEG++S HSEKLA+A+G+     G TIRIVKNLR+C +CH+  KLIS+I+  EI+ RDR
Sbjct: 567 EKEGSVSVHSEKLAVAFGIARLCKGRTIRIVKNLRICRDCHAVMKLISQIYKVEIVVRDR 626

Query: 691 NRFHHFKDGNCSCNDYW 707
           +RFH FKDG CSC DYW
Sbjct: 627 SRFHSFKDGYCSCRDYW 643


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 271/694 (39%), Positives = 393/694 (56%), Gaps = 65/694 (9%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G L+ A  VF  + E + V W  ++ G + +     AIK  + M   GF P  +T   +L
Sbjct: 6   GRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVL 65

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
            SCA   A + G+++H+ V+KLGL S   V  S++NMY + G+ E+A  VF +  +R   
Sbjct: 66  SSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVS 125

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIR------------------------------EE 227
           S+ A+++     G +D A  LF+ MP R                              E 
Sbjct: 126 SWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHES 185

Query: 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG----- 282
           +  P+E T+ +VLSACA++G++ +G  V + I    +  N  VTNALI  Y+K G     
Sbjct: 186 SMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENA 245

Query: 283 ----------------------------DLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
                                       D+  AR++F  +  RDV++W  MI GY     
Sbjct: 246 RRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGR 305

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
             EA+ LFR M+    EPN  T  +VL  CA L  LD GK IH    ++  + ++ S+  
Sbjct: 306 NDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSS-SVSN 364

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGY-KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
           ++I MYA+ G+   A ++FD + + K   +W +MI  LA HG+ ++A+ LF  M+  G++
Sbjct: 365 AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVE 424

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
           PD IT+VGVLSAC+HAG ++ G++Y++ +  +++I+P++ HY CMVDLL RAGLF EA+ 
Sbjct: 425 PDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQE 484

Query: 494 LLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGR 553
            ++ M ++PDA  W SLL ACRVH   EL E  A+ LL ++P N GAY  ++N+Y+  GR
Sbjct: 485 FIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGR 544

Query: 554 WDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEK 613
           W D A I     +K ++K  G S   + S +H F   D VHPQ   +Y M   +   ++ 
Sbjct: 545 WSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKG 604

Query: 614 SGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSA 673
           +GFVPD   VL+D+D+E KE  LS HSEKLAIA+GLIST   TT+R++KNLRVC +CH+A
Sbjct: 605 AGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAA 664

Query: 674 TKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            K ISK+ +REII RD  RFHHF+DG CSC DYW
Sbjct: 665 IKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 126/429 (29%), Positives = 201/429 (46%), Gaps = 69/429 (16%)

Query: 174 MYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
           M+A++G L  AR VF +   RDAVS+T ++ G    G   +A +   +M    + F P +
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT--ADGFTPTQ 58

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD---------- 283
            T+  VLS+CA   +  +G  V S +   GLGS + V N++++MY KCGD          
Sbjct: 59  FTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFER 118

Query: 284 ---------------------LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
                                +  A  LFES+  R ++SWN MI GY       +AL LF
Sbjct: 119 MPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLF 178

Query: 323 RQML-QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN------------- 368
            +ML +S++ P++ T  SVL ACA LG + +GK +HAYI +     N             
Sbjct: 179 SRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAK 238

Query: 369 -------------------NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
                              NV  +T+L++ Y K G++++A ++F  M  + + +W AMI 
Sbjct: 239 SGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIV 298

Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS 469
           G   +G+ D+A+ LF  MI  G +P+  T   VLS C     LD G+Q     I+   + 
Sbjct: 299 GYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSL-LE 357

Query: 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKH 529
                   ++ +  R+G F  A  +   +  + +   WTS++ A   HG+ E    + + 
Sbjct: 358 QSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEE 417

Query: 530 LLE--LEPE 536
           +L   +EP+
Sbjct: 418 MLRAGVEPD 426



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 109/432 (25%), Positives = 190/432 (43%), Gaps = 73/432 (16%)

Query: 30  NQPSLALLS---KCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLV 86
           +Q + AL+S   K  +++N +++  Q ++T L+   F  + L+E       GD+  A  +
Sbjct: 226 SQVTNALISTYAKSGSVENARRIMDQSMETDLNVISF--TALLE--GYVKIGDMESAREM 281

Query: 87  FETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAI 146
           F  +   + V W  +I G+  +     AI  +  MI  G  PN+YT   +L  CA ++ +
Sbjct: 282 FGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACL 341

Query: 147 SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-DAVSYTALITG 205
             GKQIH   ++  LE    V  ++I MYA++G    AR +F++   R + +++T++I  
Sbjct: 342 DYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVA 401

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG-HGL 264
            A  G  ++A  LF+EM        P+  T V VLSAC+H G +  G      I+  H +
Sbjct: 402 LAQHGQGEEAVGLFEEML--RAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQI 459

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
              +     ++D+ ++ G       LF                         EA    R+
Sbjct: 460 APEMSHYACMVDLLARAG-------LF------------------------SEAQEFIRR 488

Query: 325 MLQSNIEPNDVTFLSVLPAC-----AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
           M    +EP+ + + S+L AC     A L  L   K +   ID      NN   ++++ ++
Sbjct: 489 M---PVEPDAIAWGSLLSACRVHKNAELAELAAEKLLS--IDP-----NNSGAYSAIANV 538

Query: 380 YAKCGNIKAAEQVFDGMGYKTLA-----SWNAMISGL-------AMHGKADKALSLFSRM 427
           Y+ CG    A +++     K +      SW  + S +        +H + D   ++ +RM
Sbjct: 539 YSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARM 598

Query: 428 I----GEGLQPD 435
                G G  PD
Sbjct: 599 WEEIKGAGFVPD 610


>gi|302791701|ref|XP_002977617.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
 gi|300154987|gb|EFJ21621.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
          Length = 805

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 265/697 (38%), Positives = 414/697 (59%), Gaps = 22/697 (3%)

Query: 25  YKLLQNQPSL------ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVS 75
           +++LQ   +L      ++LS C++ + +   + +H   ++ GL   +   S L+ +    
Sbjct: 117 HRILQEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSM--YG 174

Query: 76  PFGDLSYALLVFETI-REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFP 134
             G L  A  +F  + R  + V+WN +I  +S + SP  A++ + RM+  G  P+  TF 
Sbjct: 175 RCGSLRDANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFV 234

Query: 135 FILKSCAKISAI--SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
            + K+C+   ++  S+ K  HA + + GL SD  V T+L+N YA+ GE++ AR  F +  
Sbjct: 235 SVFKACSSSPSLRASQVKGFHACLDETGLGSDVVVATALVNAYARCGEIDCARKFFAEMP 294

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
            R+AVS+T++I  +   G+L  A + F  M +  E  VP  ST+   L  C     L + 
Sbjct: 295 ERNAVSWTSMIAAFTQIGHLL-AVETFHAMLL--EGVVPTRSTLFAALEGCE---DLRVA 348

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR--DVISWNVMIGGYT 310
             V ++ +  G+ +++ +   L+  Y++C     A  +F + E+   D      MI  Y 
Sbjct: 349 RLVEAIAQEIGVVTDVAIVTDLVMAYARCDGQEDAIRVFSAREEGEWDAALVTAMIAVYA 408

Query: 311 HTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNV 370
              D +    L+   ++  I P+ + +++ L ACA L AL  G+ IHA +  + +   +V
Sbjct: 409 QCRDRRSTFKLWGAAIERGISPDRILYITALDACASLAALSEGRQIHACVAADRRLDRDV 468

Query: 371 SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE 430
           +L  +++ MY +CG+++ A   FDGM  +   SWNAM+S  A HG+ +    LF  M+ E
Sbjct: 469 TLGNAIVSMYGQCGSLRDARDAFDGMPARDEISWNAMLSASAQHGRVEDCCDLFRAMLQE 528

Query: 431 GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
           G   + I F+ +LSAC HAGL+  G ++F+AM  D+ + P  +HYGCMVDLLGR G   +
Sbjct: 529 GFDAERIAFLNLLSACAHAGLVKAGCEHFSAMTGDHGVVPATEHYGCMVDLLGRKGRLAD 588

Query: 491 AEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAG 550
           A  +++ M + PDAA W +L+GACR++G  E G   A+ +LEL  ++  AYV L N+Y+ 
Sbjct: 589 AHGIVQAMPVPPDAATWMALMGACRIYGDTERGRFAAERVLELRADHTAAYVALCNIYSA 648

Query: 551 AGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDAL 610
           AGRWDD A +R  + D G++K+PG SSIE+ S VHEF+V D+ HPQS+ IY  L+ +   
Sbjct: 649 AGRWDDAAAVRKIMADLGLRKIPGVSSIEIRSKVHEFVVRDRSHPQSEAIYAELERVMGA 708

Query: 611 LEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNC 670
           +E++G+   T EVL+D++EE KE  L  HSEKLAIA+G++ST  G+T+R++KNLRVC +C
Sbjct: 709 IERAGYRAVTGEVLHDVEEEQKEQLLRFHSEKLAIAFGMMSTPQGSTLRVIKNLRVCVDC 768

Query: 671 HSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           H+A+K ISK+F REI+ RD  RFHHFKDG CSC DYW
Sbjct: 769 HNASKFISKVFGREIVVRDVRRFHHFKDGACSCGDYW 805



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 201/451 (44%), Gaps = 17/451 (3%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G L  A+ VF  I   + V+W  +I  +        AI  + R++  G   +   F  +L
Sbjct: 76  GSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVSVL 135

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-DA 196
            +C+    ++ G+ IH   ++ GL     V ++L++MY + G L  A  +F       D 
Sbjct: 136 SACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANALFGHLERHLDV 195

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL----G 252
           V + A+IT  +  G   +A ++F  M   +    P+  T V+V  AC+   SL      G
Sbjct: 196 VLWNAMITANSQNGSPREALEIFYRML--QLGIPPDLVTFVSVFKACSSSPSLRASQVKG 253

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
              C  ++  GLGS++ V  AL++ Y++CG++  AR  F  + +R+ +SW  MI  +T  
Sbjct: 254 FHAC--LDETGLGSDVVVATALVNAYARCGEIDCARKFFAEMPERNAVSWTSMIAAFTQI 311

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
             +  A+  F  ML   + P   T  + L  C     L + + + A I +    + +V++
Sbjct: 312 G-HLLAVETFHAMLLEGVVPTRSTLFAALEGCE---DLRVARLVEA-IAQEIGVVTDVAI 366

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGM--GYKTLASWNAMISGLAMHGKADKALSLFSRMIGE 430
            T L+  YA+C   + A +VF     G    A   AMI+  A          L+   I  
Sbjct: 367 VTDLVMAYARCDGQEDAIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIER 426

Query: 431 GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
           G+ PD I ++  L AC     L  GRQ    +  D ++   +     +V + G+ G   +
Sbjct: 427 GISPDRILYITALDACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRD 486

Query: 491 AEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
           A      M  + D   W ++L A   HGR+E
Sbjct: 487 ARDAFDGMPAR-DEISWNAMLSASAQHGRVE 516



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 135/266 (50%), Gaps = 4/266 (1%)

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
           ++ ++L+ MY +CG L  A D+F  I  + ++ W V+I  Y        A+ LF ++LQ 
Sbjct: 63  YLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQE 122

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            I  + + F+SVL AC+    L  G+ IH    +    L  + + ++L+ MY +CG+++ 
Sbjct: 123 GIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEI-VASALVSMYGRCGSLRD 181

Query: 389 AEQVFDGM-GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
           A  +F  +  +  +  WNAMI+  + +G   +AL +F RM+  G+ PD +TFV V  AC+
Sbjct: 182 ANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACS 241

Query: 448 HAGLLDIGR-QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
            +  L   + + F+A + +  +   +     +V+   R G  D A      M  + +A  
Sbjct: 242 SSPSLRASQVKGFHACLDETGLGSDVVVATALVNAYARCGEIDCARKFFAEMPER-NAVS 300

Query: 507 WTSLLGACRVHGRLELGESVAKHLLE 532
           WTS++ A    G L   E+    LLE
Sbjct: 301 WTSMIAAFTQIGHLLAVETFHAMLLE 326



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 83/163 (50%), Gaps = 5/163 (3%)

Query: 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLA 412
           GK +H+ I  +     +  L +SL+ MY +CG++++A  VF  + +K++  W  +IS   
Sbjct: 45  GKLLHSKISSSPSLSRDGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYV 104

Query: 413 MHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL 472
             G +  A++LF R++ EG+  D I FV VLSAC+    L  GR      ++       L
Sbjct: 105 SRGHSAAAIALFHRILQEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVE---AGLGL 161

Query: 473 QHY--GCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
           Q      +V + GR G   +A AL   +E   D  +W +++ A
Sbjct: 162 QEIVASALVSMYGRCGSLRDANALFGHLERHLDVVLWNAMITA 204


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 261/615 (42%), Positives = 379/615 (61%), Gaps = 13/615 (2%)

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
           WN  +R  +     + A+  Y +M+  G  PN +TFPF LKSCA +S    G Q H  + 
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76

Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVF--NKSSLRDAVSYTALITGYASRGYLDDA 215
           K+G   +PFV T LI+MY +   +++AR VF  N  S +  V Y AL++GY S     +A
Sbjct: 77  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEA 136

Query: 216 RQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV-CSLIEGHGLGSNLHVTNAL 274
             LF +M   EE    N  T++ ++ AC    +LELG+ + CS ++ +G  S++ V N  
Sbjct: 137 VLLFRQM--NEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLK-YGFDSDVSVVNCF 193

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
           I MY KCG +  A+ LF+ +  + +ISWN M+ GY         L L+R M  + + P+ 
Sbjct: 194 ITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDP 253

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           VT + VL +CA LGA  +G  +   I  +    +N  L  +LI+MYA+CGN+  A+ VFD
Sbjct: 254 VTLVGVLSSCANLGAQSVGHEVEFKIQASGFT-SNPFLNNALINMYARCGNLTKAQAVFD 312

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
           GM  +TL SW A+I G  MHG  + A+ LF  MI  G++PD   FV VLSAC+HAGL D 
Sbjct: 313 GMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQ 372

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
           G +YF  M ++Y++ P  +HY CMVDLLGRAG   EA+ L+++M +KPD A+W +LLGAC
Sbjct: 373 GLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGAC 432

Query: 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPG 574
           ++H  +EL E   + ++ELEPEN G YVLLSN+Y+ A     V  IR  + +K +KK PG
Sbjct: 433 KIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPG 492

Query: 575 CSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEG 634
           CS +E+   VH F+VGD+ H QS  IY +L+E++A++ +    P+      + +E  K+G
Sbjct: 493 CSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEKD----NREESNKDG 548

Query: 635 --ALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
              +  HSEKLA+A+GL++T  G  + I+KNLR+C +CH   K++SKI +R++  RD  R
Sbjct: 549 FTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDATR 608

Query: 693 FHHFKDGNCSCNDYW 707
           FHHF++G+CSC DYW
Sbjct: 609 FHHFRNGSCSCKDYW 623



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 131/450 (29%), Positives = 229/450 (50%), Gaps = 23/450 (5%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ--VIWNNIIRGH 105
           Q H QI K G     F  + LI +       D   A  VFE      +  V +N ++ G+
Sbjct: 70  QFHGQITKVGCVFEPFVQTGLISMYCKGSLVD--NARKVFEENFHSRKLTVCYNALVSGY 127

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
             +S    A+  + +M   G   N+ T   ++ +C     +  G  +H   LK G +SD 
Sbjct: 128 VSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDV 187

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
            V    I MY + G +  A+ +F++  ++  +S+ A+++GYA  G   +  +L+  M + 
Sbjct: 188 SVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMN 247

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
             +  P+  T+V VLS+CA++G+  +G+ V   I+  G  SN  + NALI+MY++CG+L 
Sbjct: 248 GVH--PDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLT 305

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
           KA+ +F+ + +R ++SW  +IGGY      + A+ LF++M++S IEP+   F+ VL AC+
Sbjct: 306 KAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACS 365

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT-LASW 404
           + G  D G      + +N+Q       ++ ++D+  + G +K A+ + + M  K   A W
Sbjct: 366 HAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVW 425

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS-----ACNHAGLLDIGRQYF 459
            A++    +H   + A   F R+I   L+P++I +  +LS     A N  G+L I     
Sbjct: 426 GALLGACKIHKNVELAELAFERVI--ELEPENIGYYVLLSNIYSNANNSKGVLRI----- 478

Query: 460 NAMIQDYKISPKLQHYGC-MVDLLGRAGLF 488
             M+++ K+    +  GC  V+L GR   F
Sbjct: 479 RIMMKEKKLK---KDPGCSYVELKGRVHPF 505



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 172/366 (46%), Gaps = 44/366 (12%)

Query: 34  LALLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           L L+  C +  N++    +H   +K G  +    ++  I +      G ++YA  +F+ +
Sbjct: 156 LGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITM--YMKCGSVNYAQKLFDEM 213

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
                + WN ++ G++ +      ++ Y  M ++G  P+  T   +L SCA + A S G 
Sbjct: 214 PVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGH 273

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           ++   +   G  S+PF++ +LINMYA+ G L  A+ VF+    R  VS+TA+I GY   G
Sbjct: 274 EVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHG 333

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLH 269
           + + A QLF EM IR     P+ +  V VLSAC+H G  + G  +   +   + L     
Sbjct: 334 HGEIAVQLFKEM-IR-SGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPE 391

Query: 270 VTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
             + ++D+  + G L +A+ L ES+  K D   W  ++G      + + A + F ++++ 
Sbjct: 392 HYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIE- 450

Query: 329 NIEPNDVTFLSVL----------------------------PACAYLGALDLGKWIHAYI 360
            +EP ++ +  +L                            P C+Y   ++L   +H +I
Sbjct: 451 -LEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSY---VELKGRVHPFI 506

Query: 361 --DKNH 364
             D+NH
Sbjct: 507 VGDRNH 512


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/677 (39%), Positives = 410/677 (60%), Gaps = 10/677 (1%)

Query: 35  ALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALS-KLIEICAVSPFGDLSYALLVFETI 90
           ALL  C+N         + + ++KTG  ++   +   LI++       D+  A +VF+ +
Sbjct: 150 ALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGL-DIQSARMVFDKM 208

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
           +  N V W  +I  +S       A+  + R+++S + P+ +T   +L +C ++   S GK
Sbjct: 209 QHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGK 268

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           Q+H+ V++ GL SD FV  +L++MYA++  +E++R +FN     + +S+TALI+GY    
Sbjct: 269 QLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSR 328

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
              +A +LF  M     +  PN  T  +VL ACA +    +G  +       GL +   V
Sbjct: 329 QEQEAIKLFCNM--LHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCV 386

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            N+LI+MY++ G +  AR  F  + ++++IS+N          D  E+     ++  + +
Sbjct: 387 GNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDESFN--HEVEHTGV 444

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
             +  T+  +L   A +G +  G+ IHA I K+     N+ +  +LI MY+KCGN +AA 
Sbjct: 445 GASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFG-TNLCINNALISMYSKCGNKEAAL 503

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           QVF+ MGY+ + +W ++ISG A HG A KAL LF  M+  G++P+++T++ VLSAC+H G
Sbjct: 504 QVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVG 563

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L+D   ++FN+M  ++ ISP+++HY CMVDLLGR+GL  EA   + +M    DA +W + 
Sbjct: 564 LIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTF 623

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           LG+CRVH   +LGE  AK +LE EP +P  Y+LLSN+YA  GRWDDVA +R  +  K + 
Sbjct: 624 LGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRWDDVAALRKSMKQKKLI 683

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           K  G S IEV + VH+F VGD  HPQ++ IY+ LDE+   ++  G++P+T  VL+D+++E
Sbjct: 684 KETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDELALKIKNLGYIPNTDFVLHDVEDE 743

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KE  L  HSEK+A+AY LIST     IR+ KNLRVCG+CH+A K IS +  REI+ RD 
Sbjct: 744 QKEQYLFQHSEKIAVAYALISTPKPKPIRVFKNLRVCGDCHTAIKYISIVTGREIVVRDA 803

Query: 691 NRFHHFKDGNCSCNDYW 707
           NRFHH KDG CSCNDYW
Sbjct: 804 NRFHHIKDGKCSCNDYW 820



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 156/530 (29%), Positives = 255/530 (48%), Gaps = 26/530 (4%)

Query: 5   PSSLTLSPSILHFPPSSDPPYKL--LQNQP---SLALLSKCTNMQNI---KQVHSQIIKT 56
           PSS+ L    L F        +L      P   S  LL  C    N+   K +H ++I +
Sbjct: 9   PSSIYLQAKDLKFESLRKAISRLDLTTTSPLIKSSLLLKACIRSGNLELGKLLHHKLIDS 68

Query: 57  GLHNTQFALSKLIEICAVSPFGDLSYALLVFETI--REPNQVIWNNIIRGHSLSSSPVVA 114
           GL      L+ LI +   S  GD   AL +F  +   + + V W+ II   + +S    A
Sbjct: 69  GLPLDSVLLNSLITL--YSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRA 126

Query: 115 IKFYVRMILSG---FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG-LESDPFVHTS 170
           +  ++ M+        PN Y F  +L+SC+     + G  I A +LK G  +S   V  +
Sbjct: 127 LLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCA 186

Query: 171 LINMYAQNG-ELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENF 229
           LI+M+ + G +++SAR+VF+K   ++ V++T +IT Y+  G LDDA  LF  + + E  +
Sbjct: 187 LIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSE--Y 244

Query: 230 VPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARD 289
            P++ T+ ++LSAC  +    LG  + S +   GL S++ V   L+DMY+K   +  +R 
Sbjct: 245 TPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRK 304

Query: 290 LFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA 349
           +F ++   +V+SW  +I GY  +   +EA+ LF  ML  ++ PN  TF SVL ACA L  
Sbjct: 305 IFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPD 364

Query: 350 LDLGKWIHAY-IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI 408
             +GK +H   I      +N V    SLI+MYA+ G ++ A + F+ +  K L S+N   
Sbjct: 365 FGIGKQLHGQTIKLGLSTINCVG--NSLINMYARSGTMECARKAFNILFEKNLISYNTAA 422

Query: 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
              A    +D++ +      G G  P   T+  +LS     G +  G Q  +A+I     
Sbjct: 423 DANAKALDSDESFNHEVEHTGVGASP--FTYACLLSGAACIGTIVKGEQ-IHALIVKSGF 479

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
              L     ++ +  + G  + A  +   M  + +   WTS++     HG
Sbjct: 480 GTNLCINNALISMYSKCGNKEAALQVFNDMGYR-NVITWTSIISGFAKHG 528


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 269/694 (38%), Positives = 412/694 (59%), Gaps = 14/694 (2%)

Query: 20  SSDPPYKLLQNQPSLALL----SKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVS 75
           S  P +    + P L  L    +K  ++++  Q+HSQ++ T  H +   ++ L+ + A  
Sbjct: 86  SGVPKFHQFSSVPDLKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYA-- 143

Query: 76  PFGDLSYALLVFETIREP--NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTF 133
             G + + LL+F T   P  N V W  +I   S S+ P  A+ F+ RM  +G  PN +TF
Sbjct: 144 KCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTF 203

Query: 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL 193
             IL +CA  + +SEG+QIHA + K    +DPFV T+L++MYA+ G +  A  VF++   
Sbjct: 204 SAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPH 263

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
           R+ VS+ ++I G+        A  +F E+     +  P++ ++ +VLSACA +  L+ G 
Sbjct: 264 RNLVSWNSMIVGFVKNKLYGRAIGVFREVL----SLGPDQVSISSVLSACAGLVELDFGK 319

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTS 313
            V   I   GL   ++V N+L+DMY KCG    A  LF     RDV++WNVMI G     
Sbjct: 320 QVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCR 379

Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
           ++++A   F+ M++  +EP++ ++ S+  A A + AL  G  IH+++ K    + N  + 
Sbjct: 380 NFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGH-VKNSRIS 438

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
           +SL+ MY KCG++  A QVF       +  W AMI+    HG A++A+ LF  M+ EG+ 
Sbjct: 439 SSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVV 498

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
           P+ ITFV VLSAC+H G +D G +YFN+M   + I P L+HY CMVDLLGR G  +EA  
Sbjct: 499 PEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACR 558

Query: 494 LLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGR 553
            +++M  +PD+ +W +LLGAC  H  +E+G  VA+ L +LEP+NPG Y+LLSN+Y   G 
Sbjct: 559 FIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYMLLSNIYIRHGM 618

Query: 554 WDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEK 613
            ++   +R  +   G++K  GCS I+V +    F   D+ H +++ IY ML ++  L+++
Sbjct: 619 LEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSRTQEIYGMLQKLKELIKR 678

Query: 614 SGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSA 673
            G+V +T +   +  E  +E +L  HSEKLA+A+GL+   PG+ +RI KNLR CG+CH+ 
Sbjct: 679 RGYVAET-QFATNSVEGSEEQSLWCHSEKLALAFGLLVLPPGSPVRIKKNLRTCGDCHTV 737

Query: 674 TKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            K  S+IF REII RD NRFH F +G+CSC DYW
Sbjct: 738 MKFASEIFQREIIVRDINRFHRFTNGSCSCMDYW 771


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 277/674 (41%), Positives = 401/674 (59%), Gaps = 42/674 (6%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ 95
           L    T     K +H+ ++  G   + F  ++L+ + A    GD+S +   F+ I + + 
Sbjct: 25  LFDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYA--NLGDVSLSRCTFDQIPQKDV 82

Query: 96  VIWNNIIRGHSLSSSPVVAIK-FYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
             WN++I  +  +     AI  FY  +++S   P+ YTFP +LK+C     + +G++IH 
Sbjct: 83  YAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG---TLVDGRKIHC 139

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
              KLG + + FV  SLI+MY++ G    AR +F+    RD  S+ A+I+G    G    
Sbjct: 140 WAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQ 199

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274
           A  + DEM  R E    N  TVV++L                                  
Sbjct: 200 ALDVLDEM--RLEGIKMNFVTVVSILPV-------------------------------F 226

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ-SNIEPN 333
           +DMY+K G L  A  +FE I  +DVISWN +I GY       EA+ +++ M +   I PN
Sbjct: 227 VDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPN 286

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
             T++S+LPA A++GAL  G  IH  + K +  L+ V + T LID+Y KCG +  A  +F
Sbjct: 287 QGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLD-VFVATCLIDVYGKCGRLVDAMSLF 345

Query: 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLD 453
             +  ++  +WNA+IS   +HG A+K L LF  M+ EG++PD +TFV +LSAC+H+G ++
Sbjct: 346 YQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVE 405

Query: 454 IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
            G+  F  M Q+Y I P L+HYGCMVDLLGRAG  + A   +K M ++PDA+IW +LLGA
Sbjct: 406 EGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGA 464

Query: 514 CRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVP 573
           CR+HG +ELG+  +  L E++ +N G YVLLSN+YA  G+W+ V  +R+   ++G+KK P
Sbjct: 465 CRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTP 524

Query: 574 GCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKE 633
           G S+IEV   V  F  G++ HP+ K IYE L  + A ++  G++PD S VL D++E+ KE
Sbjct: 525 GWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKE 584

Query: 634 GALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRF 693
             L+ HSE+LAIA+G+IST P + IRI KNLRVCG+CH+ATK IS+I  REI+ RD NRF
Sbjct: 585 HILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRF 644

Query: 694 HHFKDGNCSCNDYW 707
           HHFKDG CSC DYW
Sbjct: 645 HHFKDGICSCGDYW 658


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 264/663 (39%), Positives = 402/663 (60%), Gaps = 6/663 (0%)

Query: 43   MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNII 102
            ++  K+VH  ++K G  +    ++ LI   A   FG +  A  +F+ + EP+ V WN++I
Sbjct: 486  VKECKRVHGYVLKLGFGSNTAVVNSLIA--AYFKFGGVESAHNLFDELSEPDVVSWNSMI 543

Query: 103  RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE 162
             G  ++      ++ +++M++ G   +  T   +L + A I  +S G+ +H   +K    
Sbjct: 544  NGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFS 603

Query: 163  SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
             +     +L++MY++ G L  A  VF K      VS+T+ I  Y   G   DA  LFDEM
Sbjct: 604  EEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEM 663

Query: 223  PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
              + +   P+  TV +++ ACA   SL+ G  V S +  +G+GSNL VTNALI+MY+KCG
Sbjct: 664  --QSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCG 721

Query: 283  DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
             + +AR +F  I  +D++SWN MIGGY+  S   EAL LF  M Q   +P+D+T   VLP
Sbjct: 722  SVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDM-QKQFKPDDITMACVLP 780

Query: 343  ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
            ACA L ALD G+ IH +I +     +++ +  +L+DMYAKCG +  A+ +FD +  K L 
Sbjct: 781  ACAGLAALDKGREIHGHILR-RGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLI 839

Query: 403  SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
            SW  MI+G  MHG  ++A+S F+ M   G++PD+ +F  +L+AC+H+GLL+ G ++FN+M
Sbjct: 840  SWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSM 899

Query: 463  IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
              +  + PKL+HY C+VDLL R G   +A   +++M +KPD  IW  LL  CR+H  ++L
Sbjct: 900  RNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKL 959

Query: 523  GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582
             E VA+H+ ELEP+N   YV+L+N+YA A +W++V  +R R+  +G K+ PGCS IEVG 
Sbjct: 960  AEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGG 1019

Query: 583  VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEK 642
              + F+ G+  HPQ+K I  +L ++   ++   +      VL + D+  KE     HSEK
Sbjct: 1020 KFNIFVAGNSKHPQAKRIDVLLRKLTMQMQNEDYFSMFRYVLINEDDMEKEMIQCGHSEK 1079

Query: 643  LAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCS 702
             A+A+G+++  PG T+R+ KN RVCG+CH   K +SK   REI+ RD NRFHHFKDG CS
Sbjct: 1080 SAMAFGILNLPPGRTVRVSKNQRVCGDCHEMGKFMSKTTKREIVLRDSNRFHHFKDGLCS 1139

Query: 703  CND 705
            C D
Sbjct: 1140 CRD 1142



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 158/492 (32%), Positives = 258/492 (52%), Gaps = 22/492 (4%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L L ++  ++++ K+VHS II  G+   +   +KL+ +      GDL     +F+ I   
Sbjct: 376 LQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNC--GDLVQGRKIFDKIMND 433

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
              +WN ++  ++   +   ++  + +M   G V N YTF  +LK  A +  + E K++H
Sbjct: 434 KVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVH 493

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
            +VLKLG  S+  V  SLI  Y + G +ESA  +F++ S  D VS+ ++I G    G+  
Sbjct: 494 GYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSG 553

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG------SN 267
           +  ++F +M I       + +T+V+VL A A++G+L LG  +      HG G        
Sbjct: 554 NGLEIFIQMLIL--GVEVDLTTLVSVLVAWANIGNLSLGRAL------HGFGVKACFSEE 605

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
           +  +N L+DMYSKCG+L  A ++F  +    ++SW   I  Y     Y +A+ LF +M  
Sbjct: 606 VVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQS 665

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
             + P+  T  S++ ACA   +LD G+ +H+Y+ KN    +N+ +  +LI+MYAKCG+++
Sbjct: 666 KGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMG-SNLPVTNALINMYAKCGSVE 724

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
            A  VF  +  K + SWN MI G + +   ++AL LF  M  +  +PDDIT   VL AC 
Sbjct: 725 EARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQ-FKPDDITMACVLPACA 783

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGC-MVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
               LD GR+    +++    S    H  C +VD+  + GL   A+ LL  M  K D   
Sbjct: 784 GLAALDKGREIHGHILRRGYFSD--LHVACALVDMYAKCGLLVLAQ-LLFDMIPKKDLIS 840

Query: 507 WTSLLGACRVHG 518
           WT ++    +HG
Sbjct: 841 WTVMIAGYGMHG 852



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 113/378 (29%), Positives = 189/378 (50%), Gaps = 5/378 (1%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           +L+ CA+  ++ +GK++H+ ++  G+  D  +   L+ MY   G+L   R +F+K     
Sbjct: 375 VLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDK 434

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
              +  L++ YA  G   ++  LF +M  ++   V N  T   VL   A +G ++    V
Sbjct: 435 VFLWNLLMSEYAKIGNFRESVSLFKKM--QKLGVVGNCYTFTCVLKCFAALGKVKECKRV 492

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
              +   G GSN  V N+LI  Y K G +  A +LF+ + + DV+SWN MI G       
Sbjct: 493 HGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFS 552

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
              L +F QML   +E +  T +SVL A A +G L LG+ +H +  K       V    +
Sbjct: 553 GNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFS-EEVVFSNT 611

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           L+DMY+KCGN+  A +VF  MG  T+ SW + I+     G    A+ LF  M  +G++PD
Sbjct: 612 LLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPD 671

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
             T   ++ AC  +  LD GR   + +I++  +   L     ++++  + G  +EA  + 
Sbjct: 672 IYTVTSIVHACACSSSLDKGRDVHSYVIKN-GMGSNLPVTNALINMYAKCGSVEEARLVF 730

Query: 496 KTMEMKPDAAIWTSLLGA 513
             + +K D   W +++G 
Sbjct: 731 SKIPVK-DIVSWNTMIGG 747



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 186/399 (46%), Gaps = 41/399 (10%)

Query: 201 ALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE 260
           A I  +   G L +A +L      + +++    ++  +VL  CA   SLE G  V S+I 
Sbjct: 341 AKINKFCEMGDLRNAIELL----TKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVII 396

Query: 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALM 320
            +G+  +  +   L+ MY  CGDLV+ R +F+ I    V  WN+++  Y    +++E++ 
Sbjct: 397 SNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVS 456

Query: 321 LFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMY 380
           LF++M +  +  N  TF  VL   A LG +   K +H Y+ K     +N ++  SLI  Y
Sbjct: 457 LFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFG-SNTAVVNSLIAAY 515

Query: 381 AKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFV 440
            K G +++A  +FD +    + SWN+MI+G  ++G +   L +F +M+  G++ D  T V
Sbjct: 516 FKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLV 575

Query: 441 GVLSACNHAGLLDIGRQ---------------YFNAMIQDYKISPKLQHYGCMVDLLG-- 483
            VL A  + G L +GR                + N ++  Y     L     +   +G  
Sbjct: 576 SVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDT 635

Query: 484 -------------RAGLFDEAEALLKTME---MKPDAAIWTSLLGACRVHGRLELGESVA 527
                        R GL+ +A  L   M+   ++PD    TS++ AC     L+ G  V 
Sbjct: 636 TIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVH 695

Query: 528 KHLLE--LEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564
            ++++  +    P    L+ NMYA  G  ++   + +++
Sbjct: 696 SYVIKNGMGSNLPVTNALI-NMYAKCGSVEEARLVFSKI 733


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 269/707 (38%), Positives = 423/707 (59%), Gaps = 41/707 (5%)

Query: 37  LSKCTNMQ---NIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           LS C   +   N  Q+H  I+K G     F  + L+   A    G+L  A  VF+ + E 
Sbjct: 141 LSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYA--ECGELDSARKVFDEMSER 198

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQI 152
           N V W ++I G++       A+  + RM+    V PN+ T   ++ +CAK+  +  G+++
Sbjct: 199 NVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKV 258

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           +A +   G+E +  + ++L++MY +   ++ A+ +F++    +     A+ + Y  +G  
Sbjct: 259 YAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLT 318

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
            +A  +F+ M   +    P+  ++++ +S+C+ + ++  G      +  +G  S  ++ N
Sbjct: 319 REALGVFNLM--MDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICN 376

Query: 273 ALIDMYSKC-------------------------------GDLVKARDLFESIEKRDVIS 301
           ALIDMY KC                               G++  A + FE++ +++++S
Sbjct: 377 ALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVS 436

Query: 302 WNVMIGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           WN +I G    S ++EA+ +F  M  Q  +  + VT +S+  AC +LGALDL KWI+ YI
Sbjct: 437 WNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYI 496

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
           +KN  +L+ V L T+L+DM+++CG+ ++A  +F+ +  + +++W A I  +AM G A++A
Sbjct: 497 EKNGIQLD-VRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERA 555

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
           + LF  MI +GL+PD + FVG L+AC+H GL+  G++ F +M++ + +SP+  HYGCMVD
Sbjct: 556 IELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVD 615

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540
           LLGRAGL +EA  L++ M M+P+  IW SLL ACRV G +E+    A+ +  L PE  G+
Sbjct: 616 LLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGS 675

Query: 541 YVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHI 600
           YVLLSN+YA AGRW+D+A +R  + +KG++K PG SSI++    HEF  GD+ HP+  +I
Sbjct: 676 YVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNI 735

Query: 601 YEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRI 660
             MLDE+       G VPD S VL D+DE+ K   LS HSEKLA+AYGLIS+  GTTIRI
Sbjct: 736 EAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRI 795

Query: 661 VKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           VKNLRVC +CHS  K  SK++NREII RD NRFH+ + G CSC D+W
Sbjct: 796 VKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842



 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 176/547 (32%), Positives = 276/547 (50%), Gaps = 46/547 (8%)

Query: 1   MALPPSSLTLSPSILHFPPSSDPPY----KLLQNQPSLALLSKCTNMQNIKQVHSQIIKT 56
           MA+  + L LSP +L    ++ P      K  +  PS   L  C  +  +K  H  + K 
Sbjct: 1   MAMLGNVLHLSPMVLATTTTTKPSLLNQSKCTKATPSS--LKNCKTIDELKMFHRSLTKQ 58

Query: 57  GLHNTQFALSKLI-EICAVSPFGDLSYALLVFETIREPNQV-IWNNIIRGHSLSSSPVVA 114
           GL N    ++KL+   C +     LS+A  VFE         ++N++IRG++ S     A
Sbjct: 59  GLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEA 118

Query: 115 IKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINM 174
           I  ++RM+ SG  P+ YTFPF L +CAK  A   G QIH  ++K+G   D FV  SL++ 
Sbjct: 119 ILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHF 178

Query: 175 YAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNES 234
           YA+ GEL+SAR VF++ S R+ VS+T++I GYA R +  DA  LF  M +R+E   PN  
Sbjct: 179 YAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM-VRDEEVTPNSV 237

Query: 235 TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
           T+V V+SACA +  LE G  V + I   G+  N  + +AL+DMY KC  +  A+ LF+  
Sbjct: 238 TMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEY 297

Query: 295 EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGK 354
              ++   N M   Y      +EAL +F  M+ S + P+ ++ LS + +C+ L  +  GK
Sbjct: 298 GASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGK 357

Query: 355 WIHAYIDKN-HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAM 413
             H Y+ +N  +  +N+    +LIDMY KC     A ++FD M  KT+ +WN++++G   
Sbjct: 358 SCHGYVLRNGFESWDNIC--NALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVE 415

Query: 414 HGKADKALSLFSRM--------------------------------IGEGLQPDDITFVG 441
           +G+ D A   F  M                                  EG+  D +T + 
Sbjct: 416 NGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMS 475

Query: 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK 501
           + SAC H G LD+ + +    I+   I   ++    +VD+  R G  + A ++  ++  +
Sbjct: 476 IASACGHLGALDLAK-WIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNR 534

Query: 502 PDAAIWT 508
            D + WT
Sbjct: 535 -DVSAWT 540


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 275/701 (39%), Positives = 417/701 (59%), Gaps = 29/701 (4%)

Query: 26  KLLQNQPSLALLSKCTNMQNIKQVHSQIIKTG--LHNTQFALSKLIEICAVSPFGDLSYA 83
           K+L+  P+  L     + +  KQ+H+ I+KT   LH+    +  L     +       ++
Sbjct: 11  KILRKTPNKTL---SVSTRQAKQLHAHIVKTKGTLHSDNILVLSLYSNLNLL-----QHS 62

Query: 84  LLVFETIREPNQVI-WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           L +F ++  P   + W++II+ ++  S   ++   +  M      PN + FP +LK+   
Sbjct: 63  LHLFNSLPSPPPPLAWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTL 122

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ-------------NGE--LESARLV 187
           +        +HA  ++LGL+SD ++  +LIN YA+              GE  ++  + V
Sbjct: 123 LKHHKLAHSLHACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKV 182

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
           F+   +RD VS+  +I G+A  G   +A  +  EM  +     P+  T+ ++L   A   
Sbjct: 183 FDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMG-KNGKLKPDSFTLSSILPIFAEHV 241

Query: 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG 307
            +  G  +      +G   ++ + ++LIDMY+KC  L  +   F  + ++D ISWN +I 
Sbjct: 242 DVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIA 301

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
           G     ++   L  FR+ML+ N++P  V+F SV+PACA+L AL LG+ +H  I +     
Sbjct: 302 GCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFD- 360

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
           +N  + +SL+DMYAKCGNIK A  VFD +  + + +W A+I G AMHG A  A+SLF  M
Sbjct: 361 DNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENM 420

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
           + +G++P  + F+ VL+AC+HAGL+D G +YFN+M +D+ I+P L+HY  + DLLGRAG 
Sbjct: 421 LEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGR 480

Query: 488 FDEAEALLKTME-MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSN 546
            +EA   +  M  ++P  ++W+ LL ACR H  +EL E V   LL ++ EN GAYVL+SN
Sbjct: 481 LEEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSN 540

Query: 547 MYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDE 606
           +Y+ A RW D A +R  +  KG+KK P CS IEVG+ VH F+ GDK HP    I + LD 
Sbjct: 541 IYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDV 600

Query: 607 IDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRV 666
           +   +EK G+V DT++VL+D+DEE K   L +HSE+LAIAYG+IST  GTTIR++KN+RV
Sbjct: 601 LLEQMEKEGYVIDTNQVLHDVDEELKRELLHNHSERLAIAYGIISTTAGTTIRVIKNIRV 660

Query: 667 CGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           C +CH+A K I+KI  REI  RD +RFHHFK+G+CSC DYW
Sbjct: 661 CADCHTAIKFITKIVGREITVRDNSRFHHFKNGSCSCGDYW 701


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 270/667 (40%), Positives = 399/667 (59%), Gaps = 21/667 (3%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSL 107
           Q+H+ ++K G    +   + LI +  +S  G L  A +VF+ +   + V WN++I GH +
Sbjct: 224 QIHALVVKLGFETERLVCNSLISM--LSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVI 281

Query: 108 SSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFV 167
           +   + A + +  M L+G  P   TF  ++KSCA +  +   + +H   LK GL ++  V
Sbjct: 282 NGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNV 341

Query: 168 HTSLINMYAQNGELESARLVFN-KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
            T+L+    +  E++ A  +F+    ++  VS+TA+I+GY   G  D A  LF  M  R 
Sbjct: 342 LTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLM--RR 399

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH----VTNALIDMYSKCG 282
           E   PN  T  T+L+    +          S I    + +N      V  AL+D + K G
Sbjct: 400 EGVKPNHFTYSTILTVQHAV--------FISEIHAEVIKTNYEKSSSVGTALLDAFVKIG 451

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
           ++  A  +FE IE +DVI+W+ M+ GY    + +EA  +F Q+ +  I+PN+ TF S++ 
Sbjct: 452 NISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIIN 511

Query: 343 AC-AYLGALDLGKWIHAYIDKNHQKLNN-VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT 400
           AC A   +++ GK  HAY  K   +LNN + + +SL+ +YAK GNI++A ++F     + 
Sbjct: 512 ACTAPTASVEQGKQFHAYAIK--LRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERD 569

Query: 401 LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFN 460
           L SWN+MISG A HG+A KAL +F  M    L+ D ITF+GV+SAC HAGL+  G+ YFN
Sbjct: 570 LVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFN 629

Query: 461 AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRL 520
            MI D+ I+P ++HY CM+DL  RAG+  +A  ++  M   P A +W  +L A RVH  +
Sbjct: 630 IMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNI 689

Query: 521 ELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEV 580
           ELG+  A+ ++ LEP++  AYVLLSN+YA AG W +   +R  ++ + +KK PG S IEV
Sbjct: 690 ELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEV 749

Query: 581 GSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHS 640
            +  + FL GD  HP S HIY  L E++  L   G+ PDT+ V +D+++E KE  LSHHS
Sbjct: 750 KNKTYSFLAGDLSHPLSDHIYSKLSELNTRLRDVGYQPDTNYVFHDIEDEQKETILSHHS 809

Query: 641 EKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGN 700
           E+LAIA+GLI+T P   ++IVKNLRVCG+CHS  KL+S +  R I+ RD NRFHHFK G 
Sbjct: 810 ERLAIAFGLIATLPEIPLQIVKNLRVCGDCHSFIKLVSLVEKRYIVVRDSNRFHHFKGGL 869

Query: 701 CSCNDYW 707
           CSC DYW
Sbjct: 870 CSCGDYW 876



 Score =  209 bits (531), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 143/499 (28%), Positives = 265/499 (53%), Gaps = 27/499 (5%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +QVH Q +K GL +     + L+++   +  G++     VF+ + + + V WN+++ G+S
Sbjct: 122 EQVHCQCVKCGLVHHLSVGNSLVDM--YTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYS 179

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +       + +  M + G+ P+ YT   ++ + A   A++ G QIHA V+KLG E++  
Sbjct: 180 WNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERL 239

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V  SLI+M +++G L  AR+VF+    +D+VS+ ++I G+   G   +A + F+ M +  
Sbjct: 240 VCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAG 299

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
               P  +T  +V+ +CA +  L L   +       GL +N +V  AL+   +KC ++  
Sbjct: 300 AK--PTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDD 357

Query: 287 ARDLFESIEK-RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
           A  LF  +   + V+SW  MI GY    D  +A+ LF  M +  ++PN  T+ ++L    
Sbjct: 358 AFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTV-- 415

Query: 346 YLGALDLGKWIHAYIDK-NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
              A+ + + IHA + K N++K ++V   T+L+D + K GNI  A +VF+ +  K + +W
Sbjct: 416 -QHAVFISE-IHAEVIKTNYEKSSSVG--TALLDAFVKIGNISDAVKVFELIETKDVIAW 471

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH-AGLLDIGRQYFNAMI 463
           +AM++G A  G+ ++A  +F ++  EG++P++ TF  +++AC      ++ G+Q+     
Sbjct: 472 SAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQF----- 526

Query: 464 QDYKISPKLQHYGC----MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
             Y I  +L +  C    +V L  + G  + A  + K  + + D   W S++     HG+
Sbjct: 527 HAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKER-DLVSWNSMISGYAQHGQ 585

Query: 520 ----LELGESVAKHLLELE 534
               LE+ E + K  LE++
Sbjct: 586 AKKALEVFEEMQKRNLEVD 604



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 142/477 (29%), Positives = 234/477 (49%), Gaps = 19/477 (3%)

Query: 99  NNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLK 158
           N ++  +S       A+  +V +  SG  P++YT   +L  CA     + G+Q+H   +K
Sbjct: 71  NQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVK 130

Query: 159 LGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQL 218
            GL     V  SL++MY + G +   R VF++   RD VS+ +L+TGY+   + D   +L
Sbjct: 131 CGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWEL 190

Query: 219 FDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMY 278
           F  M +  E + P+  TV TV++A A+ G++ +G  + +L+   G  +   V N+LI M 
Sbjct: 191 FCLMQV--EGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISML 248

Query: 279 SKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
           SK G L  AR +F+++E +D +SWN MI G+       EA   F  M  +  +P   TF 
Sbjct: 249 SKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFA 308

Query: 339 SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM-G 397
           SV+ +CA L  L L + +H    K+    N  ++ T+L+    KC  I  A  +F  M G
Sbjct: 309 SVIKSCASLKELGLVRVLHCKTLKSGLSTNQ-NVLTALMVALTKCKEIDDAFSLFSLMHG 367

Query: 398 YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
            +++ SW AMISG   +G  D+A++LFS M  EG++P+  T+  +L+   HA    I   
Sbjct: 368 VQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTV-QHAVF--ISEI 424

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
           +   +  +Y+ S  +     ++D   + G   +A  + + +E K D   W+++L      
Sbjct: 425 HAEVIKTNYEKSSSVG--TALLDAFVKIGNISDAVKVFELIETK-DVIAWSAMLAGYAQA 481

Query: 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGA--------GRWDDVATIRTRLND 566
           G  E    +  H L  E   P  +   S + A          G+      I+ RLN+
Sbjct: 482 GETEEAAKIF-HQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNN 537



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 183/381 (48%), Gaps = 24/381 (6%)

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQ----NGELESARLVFNKSSLRDAVSYTALITGY 206
           Q+H H       ++P + + ++ + A+    + +   A+ +F+++ LRD   +  L+  Y
Sbjct: 25  QLHCH-------ANPLLQSHVVALNARTLLRDSDPRFAQQLFDQTPLRDLKQHNQLLFRY 77

Query: 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV-CSLIEGHGLG 265
           +      +A  LF  + +      P+  T+  VLS CA   +  +G  V C  ++  GL 
Sbjct: 78  SRCDQTQEALHLF--VSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKC-GLV 134

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
            +L V N+L+DMY+K G++   R +F+ +  RDV+SWN ++ GY+      +   LF  M
Sbjct: 135 HHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLM 194

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
                 P+  T  +V+ A A  GA+ +G  IHA + K   +   + +  SLI M +K G 
Sbjct: 195 QVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERL-VCNSLISMLSKSGM 253

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           ++ A  VFD M  K   SWN+MI+G  ++G+  +A   F+ M   G +P   TF  V+ +
Sbjct: 254 LRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKS 313

Query: 446 CNHAGLLDIGR-QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504
           C  A L ++G  +  +       +S        ++  L +    D+A +L   M      
Sbjct: 314 C--ASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSV 371

Query: 505 AIWTSLLGACRVHGRLELGES 525
             WT+++      G L+ G++
Sbjct: 372 VSWTAMIS-----GYLQNGDT 387



 Score = 45.1 bits (105), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 79/164 (48%), Gaps = 15/164 (9%)

Query: 35  ALLSKCT----NMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           ++++ CT    +++  KQ H+  IK  L+N     S L+ + A    G++  A  +F+  
Sbjct: 508 SIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYA--KRGNIESAHEIFKRQ 565

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
           +E + V WN++I G++       A++ +  M       +  TF  ++ +CA    + +G+
Sbjct: 566 KERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQ 625

Query: 151 Q-----IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN 189
                 I+ H +   +E     ++ +I++Y++ G L  A  + N
Sbjct: 626 NYFNIMINDHHINPTMEH----YSCMIDLYSRAGMLGKAMDIIN 665


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 270/654 (41%), Positives = 388/654 (59%), Gaps = 34/654 (5%)

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRM----------ILSGF 126
           + +L  A L+F+ + E + V WN ++ G++ +     A + +  M          +L+ +
Sbjct: 43  YRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAY 102

Query: 127 VPN------------TYTFPFILKSCAKISAISEGKQIHAH-VLKLGLESDPFVHTSLIN 173
           V N               +  I  +C     +   + + A  +     E D     ++I+
Sbjct: 103 VQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMIS 162

Query: 174 MYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
            YAQNGEL  A+ +F +S +RD  ++TA+++GY   G LD+AR++FD MP  E+N V + 
Sbjct: 163 GYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMP--EKNSV-SW 219

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
           + ++     C  M           L E      N+   N +I  Y++ GD+ +AR+ F+ 
Sbjct: 220 NAIIAGYVQCKRMDQAR------ELFEAMPC-QNVSSWNTMITGYAQNGDIAQARNFFDR 272

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
           + +RD ISW  +I GY  +   +EAL LF +M +     N  TF S L  CA + AL+LG
Sbjct: 273 MPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELG 332

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAM 413
           K +H  + K   + +   +  +L+ MY KCGNI  A  VF+G+  K + SWN MI+G A 
Sbjct: 333 KQVHGRVVKAGLE-SGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYAR 391

Query: 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQ 473
           HG   +AL LF  M   G+ PDD+T VGVLSAC+H GL+D G +YF +M QDY I+   +
Sbjct: 392 HGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSK 451

Query: 474 HYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL 533
           HY CM+DLLGRAG  D+A+ L+K M  +PDAA W +LLGA R+HG  ELGE  AK + E+
Sbjct: 452 HYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEM 511

Query: 534 EPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKV 593
           EP+N G YVLLSN+YA +GRW DV  +R R+ D+G+KKVPG S +EV + +H F VGD V
Sbjct: 512 EPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSV 571

Query: 594 HPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTK 653
           HP+   IY  L+E+D  ++K G+V  T  VL+D++EE K   L +HSEKLA+A+G+++  
Sbjct: 572 HPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIP 631

Query: 654 PGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            G  IR++KNLRVC +CH+A K ISKI  R II RD +RFHHF  G CSC DYW
Sbjct: 632 AGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGDYW 685



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 87/174 (50%), Gaps = 7/174 (4%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           + LS C  +  +   KQVH +++K GL +  +  + L+ +      G++  A +VFE I 
Sbjct: 318 STLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVM--YCKCGNIDDAYIVFEGIE 375

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           E   V WN +I G++       A+  +  M  +G +P+  T   +L +C+    + +G +
Sbjct: 376 EKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTE 435

Query: 152 -IHAHVLKLGLESDPFVHTSLINMYAQNGELESAR-LVFNKSSLRDAVSYTALI 203
             ++     G+ ++   +T +I++  + G L+ A+ L+ N     DA ++ AL+
Sbjct: 436 YFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALL 489


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 258/659 (39%), Positives = 390/659 (59%), Gaps = 5/659 (0%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           +H+  +  G  +  F  S L+++     F  ++YA  VF+ + + + V+WN +I G   +
Sbjct: 125 LHAHAVVDGFDSNLFVASALVDL--YCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRN 182

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVH 168
                +++ +  M+  G   ++ T   +L + A++  +  G  I    LKLG   D +V 
Sbjct: 183 CCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVL 242

Query: 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
           T LI+++++  ++++ARL+F      D VSY ALI+G++  G  + A + F E+ +  + 
Sbjct: 243 TGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQR 302

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288
              + ST+V ++   +  G L L   +       G      V+ AL  +YS+  ++  AR
Sbjct: 303 V--SSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLAR 360

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
            LF+   ++ V +WN MI GY  +   + A+ LF++M+ +   PN VT  S+L ACA LG
Sbjct: 361 QLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLG 420

Query: 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI 408
           AL  GK +H  I K+     N+ + T+LIDMYAKCGNI  A Q+FD    K   +WN MI
Sbjct: 421 ALSFGKSVHQLI-KSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMI 479

Query: 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
            G  +HG  D+AL LF+ M+  G QP  +TF+ VL AC+HAGL+  G + F+AM+  Y+I
Sbjct: 480 FGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRI 539

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
            P  +HY CMVD+LGRAG  ++A   ++ M ++P  A+W +LLGAC +H    L    ++
Sbjct: 540 EPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASE 599

Query: 529 HLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFL 588
            L EL+P N G YVLLSN+Y+    +   A++R  +  + + K PGC+ IEV    H F+
Sbjct: 600 RLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFV 659

Query: 589 VGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYG 648
            GD+ H Q+  IY  L+E+   + + G+  +T   L+D++EE KE   + HSEKLAIA+G
Sbjct: 660 CGDRSHSQTTSIYAKLEELTGKMREMGYQSETVTALHDVEEEEKELMFNVHSEKLAIAFG 719

Query: 649 LISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           LI+T+PGT IRI+KNLRVC +CH+ATK ISKI  R I+ RD NRFHHFKDG CSC DYW
Sbjct: 720 LITTEPGTEIRIIKNLRVCLDCHAATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 778



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 146/517 (28%), Positives = 260/517 (50%), Gaps = 13/517 (2%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           LAL+SK     ++ + H+Q+I+ G  +    ++KL +   +   G   +A  +F ++ +P
Sbjct: 12  LALISKACTFPHLAETHAQLIRNGYQHDLATVTKLTQ--KLFDVGATRHARALFFSVPKP 69

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMIL-SGFVPNTYTFPFILKSCAKISAISEGKQI 152
           +  ++N +I+G S S     +I FY  ++  +   P+ +T+ F + +    +    G  +
Sbjct: 70  DIFLFNVLIKGFSFSPD-ASSISFYTHLLKNTTLSPDNFTYAFAISASPDDNL---GMCL 125

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           HAH +  G +S+ FV ++L+++Y +   +  AR VF+K   RD V +  +ITG       
Sbjct: 126 HAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCY 185

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           DD+ Q+F +M  +      + +TV TVL A A M  +++G  +  L    G   + +V  
Sbjct: 186 DDSVQVFKDMVAQGVRL--DSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLT 243

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            LI ++SKC D+  AR LF  I K D++S+N +I G++   + + A+  FR++L S    
Sbjct: 244 GLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRV 303

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           +  T + ++P  +  G L L   I  +  K+   L   S+ T+L  +Y++   I  A Q+
Sbjct: 304 SSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQP-SVSTALTTIYSRLNEIDLARQL 362

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           FD    KT+A+WNAMISG A  G  + A+SLF  M+     P+ +T   +LSAC   G L
Sbjct: 363 FDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGAL 422

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
             G+   + +I+   +   +     ++D+  + G   EA  L      K +   W +++ 
Sbjct: 423 SFGKS-VHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEK-NTVTWNTMIF 480

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549
              +HG  +    +   +L L  + P +   LS +YA
Sbjct: 481 GYGLHGYGDEALKLFNEMLHLGFQ-PSSVTFLSVLYA 516


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 264/606 (43%), Positives = 378/606 (62%), Gaps = 50/606 (8%)

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYA--QNGELESARLVFNKSSLRDAVSYTALITGYA 207
           KQ+HA ++K     DP     L+   A   + +L+ AR +F      +  SY  LI   +
Sbjct: 28  KQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLIRALS 87

Query: 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
                 DA  +F EM + + +  PN  T  +V  AC     L  G  V  L    GL S+
Sbjct: 88  ESNDPCDALLVFIEM-VEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSD 146

Query: 268 LHVT----------------------------------------------NALIDMYSKC 281
             V                                               N +ID Y + 
Sbjct: 147 EFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRI 206

Query: 282 GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
           G+L  AR+LF+ + +R V+SWNVMI GY  +  +KEA+ +FR+M  + + PN VT +SVL
Sbjct: 207 GELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVL 266

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
           PA + LGAL+LGKW+H Y  +N+  +++V L ++LIDMYAKCG+I+ A QVF+G+  + +
Sbjct: 267 PAMSRLGALELGKWVHLYAVRNNIGVDDV-LGSALIDMYAKCGSIEKALQVFEGLPKRNV 325

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
            +W+ +I+GLAMHG+A   L  F  M   G+ P D+T++G+LSAC+HAGL++ GR +F+ 
Sbjct: 326 VTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDH 385

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
           M++   + P+++HYGCMVDLLGRAGL +E+E L+  M +KPD  IW +LLGAC++HG +E
Sbjct: 386 MVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVE 445

Query: 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
           +G+ VA+HL+EL P + G+YV LSN+YA  G W+ VA +R  + +  ++K PGCS IE+ 
Sbjct: 446 MGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWIELD 505

Query: 582 SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
            V+HEFLV D  HP+SK I+ ML E+   L   G+ P+T++VL +MDEE KE +L++HSE
Sbjct: 506 GVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRPNTTQVLTNMDEEDKESSLNYHSE 565

Query: 642 KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
           K+AIA+GLIST+P T +RI KNLR+C +CHS+ KLISKI+ R+II RDR RFHHF +G+C
Sbjct: 566 KIAIAFGLISTQPQTPLRITKNLRICEDCHSSIKLISKIYKRKIIVRDRKRFHHFVNGSC 625

Query: 702 SCNDYW 707
           SC DYW
Sbjct: 626 SCMDYW 631



 Score =  224 bits (572), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 129/427 (30%), Positives = 220/427 (51%), Gaps = 50/427 (11%)

Query: 40  CTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWN 99
           C  MQ++KQ+H+Q+IKT       A ++L+   AVS   DL YA  +F ++  PN   +N
Sbjct: 21  CKTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYN 80

Query: 100 NIIRGHSLSSSPVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQIHAHVLK 158
            +IR  S S+ P  A+  ++ M+    V PN +TFP + K+C +   + EG+Q+H   +K
Sbjct: 81  TLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVK 140

Query: 159 LGLESDPFVHTSLINM-------------------------------------------- 174
            GL+SD FV ++++ M                                            
Sbjct: 141 FGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMI 200

Query: 175 --YAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPN 232
             Y + GELE AR +F++   R  VS+  +I GYA  G+  +A ++F EM + E    PN
Sbjct: 201 DGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAE--VPPN 258

Query: 233 ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFE 292
             T+V+VL A + +G+LELG WV      + +G +  + +ALIDMY+KCG + KA  +FE
Sbjct: 259 YVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFE 318

Query: 293 SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL 352
            + KR+V++W+ +I G       K+ L  F  M ++ + P+DVT++ +L AC++ G ++ 
Sbjct: 319 GLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNE 378

Query: 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGL 411
           G+W   ++ +       +  +  ++D+  + G ++ +E++   M  K     W A++   
Sbjct: 379 GRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGAC 438

Query: 412 AMHGKAD 418
            MHG  +
Sbjct: 439 KMHGNVE 445


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 258/674 (38%), Positives = 407/674 (60%), Gaps = 18/674 (2%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           KQVH+  ++ G  N+ F ++ L+ +      G L+ + ++  +    + V WN ++    
Sbjct: 222 KQVHAYGLRKGELNS-FIINTLVAM--YGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLC 278

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG-LESDP 165
            +   + A+++   M+L G  P+ +T   +L +C+ +  +  GK++HA+ LK G L+ + 
Sbjct: 279 QNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 338

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           FV ++L++MY    ++ S R VF+    R    + A+I GY+   +  +A  LF  M   
Sbjct: 339 FVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGME-E 397

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
               + N +T+  V+ AC   G+      +   +   GL  +  V N L+DMYS+ G + 
Sbjct: 398 SAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKID 457

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-----------QSNIEPND 334
            A  +F  +E RD+++WN MI GY  +  +++AL+L  +M            + +++PN 
Sbjct: 458 IAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNS 517

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           +T +++LP+CA L AL  GK IHAY  KN+    +V++ ++L+DMYAKCG ++ + +VFD
Sbjct: 518 ITLMTILPSCAALSALAKGKEIHAYAIKNNLA-TDVAVGSALVDMYAKCGCLQMSRKVFD 576

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
            +  K + +WN +I    MHG   +A+ L   M+ +G++P+++TF+ V +AC+H+G++D 
Sbjct: 577 QIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDE 636

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD-AAIWTSLLGA 513
           G + F  M  DY + P   HY C+VDLLGRAG   EA  L+  M    + A  W+SLLGA
Sbjct: 637 GLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGA 696

Query: 514 CRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVP 573
            R+H  LE+GE  A++L++LEP     YVLL+N+Y+ AG WD    +R  + ++G++K P
Sbjct: 697 SRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEP 756

Query: 574 GCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKE 633
           GCS IE G  VH+F+ GD  HPQS+ +   L+ +   + K G+VPDTS VL++++E+ KE
Sbjct: 757 GCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKE 816

Query: 634 GALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRF 693
             L  HSEKLAIA+G+++T PGT IR+ KNLRVC +CH ATK ISKI +REII RD  RF
Sbjct: 817 ILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRF 876

Query: 694 HHFKDGNCSCNDYW 707
           H FK+G CSC DYW
Sbjct: 877 HRFKNGTCSCGDYW 890



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 132/419 (31%), Positives = 215/419 (51%), Gaps = 10/419 (2%)

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
           W +++R    S+    A+  YV MI+ G  P+ Y FP +LK+ A +  +  GKQIHAHV 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 158 KLGLESDPF-VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDAR 216
           K G   D   V  +L+N+Y + G+  +   VF++ S R+ VS+ +LI+   S    + A 
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 217 QLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS---NLHVTNA 273
           + F  M   +EN  P+  T+V+V++AC+++   E G  +   +  +GL     N  + N 
Sbjct: 185 EAFRCM--LDENVEPSSFTLVSVVTACSNLPMPE-GLMMGKQVHAYGLRKGELNSFIINT 241

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           L+ MY K G L  ++ L  S   RD+++WN ++          EAL   R+M+   +EP+
Sbjct: 242 LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 301

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
           + T  SVLPAC++L  L  GK +HAY  KN     N  + ++L+DMY  C  + +  +VF
Sbjct: 302 EFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVF 361

Query: 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRM-IGEGLQPDDITFVGVLSACNHAGLL 452
           DGM  + +  WNAMI+G + +    +AL LF  M    GL  +  T  GV+ AC  +G  
Sbjct: 362 DGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAF 421

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
              ++  +  +    +         ++D+  R G  D A  +   ME + D   W +++
Sbjct: 422 S-RKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDR-DLVTWNTMI 478



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 134/503 (26%), Positives = 244/503 (48%), Gaps = 26/503 (5%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ALL    ++Q++   KQ+H+ + K G       ++  + +      GD      VF+ I 
Sbjct: 102 ALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTL-VNLYRKCGDFGAVYKVFDRIS 160

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKI---SAISE 148
           E NQV WN++I          +A++ +  M+     P+++T   ++ +C+ +     +  
Sbjct: 161 ERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMM 220

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           GKQ+HA+ L+ G E + F+  +L+ MY + G+L S++++      RD V++  +++    
Sbjct: 221 GKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQ 279

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG-LGSN 267
              L +A +   EM +  E   P+E T+ +VL AC+H+  L  G  + +    +G L  N
Sbjct: 280 NEQLLEALEYLREMVL--EGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDEN 337

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
             V +AL+DMY  C  ++  R +F+ +  R +  WN MI GY+     KEAL+LF  M +
Sbjct: 338 SFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEE 397

Query: 328 S-NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
           S  +  N  T   V+PAC   GA    + IH ++ K     +   +  +L+DMY++ G I
Sbjct: 398 SAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRF-VQNTLMDMYSRLGKI 456

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM------IGEG-----LQPD 435
             A ++F  M  + L +WN MI+G       + AL L  +M      + +G     L+P+
Sbjct: 457 DIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPN 516

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
            IT + +L +C     L  G++     I++  ++  +     +VD+  + G    +  + 
Sbjct: 517 SITLMTILPSCAALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMSRKVF 575

Query: 496 KTMEMKPDAAIWTSLLGACRVHG 518
             +  K +   W  ++ A  +HG
Sbjct: 576 DQIPQK-NVITWNVIIMAYGMHG 597



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 131/240 (54%), Gaps = 8/240 (3%)

Query: 302 WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361
           W  ++     ++  +EA++ +  M+   I+P++  F ++L A A L  ++LGK IHA++ 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421
           K    +++V++  +L+++Y KCG+  A  +VFD +  +   SWN++IS L    K + AL
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGL---LDIGRQYFNAMIQDYKISPKLQHYGCM 478
             F  M+ E ++P   T V V++AC++  +   L +G+Q     ++  +++  +     +
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFI--INTL 242

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA-CRVHGRLELGESVAKHLLE-LEPE 536
           V + G+ G    ++ LL +   + D   W ++L + C+    LE  E + + +LE +EP+
Sbjct: 243 VAMYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 301


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 256/677 (37%), Positives = 402/677 (59%), Gaps = 10/677 (1%)

Query: 35  ALLSKCT---NMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           +LL+ C    ++Q  KQ+HS ++K G+         L+++      GD+  A  +F    
Sbjct: 250 SLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDL--YVKCGDIETAHDIFNLGD 307

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             N V+WN ++  +   S    + + + +M  +G  PN +T+P IL++C     I  G+Q
Sbjct: 308 RTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQ 367

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IH+  +K G ESD +V   LI+MY++ G L+ AR +      RD VS+T++I GY    +
Sbjct: 368 IHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDF 427

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
            ++A   F EM  ++    P+   + +  SACA + ++  G  + + +   G  +++ + 
Sbjct: 428 CEEALATFKEM--QDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIW 485

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N L+++Y++CG   +A  LF  IE +D I+WN +I G+  +  YK+ALM+F +M Q+  +
Sbjct: 486 NTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAK 545

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAY-IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
            N  TF+S + A A L  +  GK +H   +   H     V+   +LI +Y KCG+I+ A+
Sbjct: 546 YNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVA--NALISLYGKCGSIEDAK 603

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
            +F  M  +   SWN +I+  + HG+  +AL LF +M  EGL+P+D+TF+GVL+AC+H G
Sbjct: 604 MIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVG 663

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L++ G  YF +M   Y ++P   HY C+VD+LGRAG  D A   +  M +  +A IW +L
Sbjct: 664 LVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTL 723

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           L AC+VH  +E+GE  AKHLLELEP +  +YVLLSN YA  G+W +   +R  + D+G++
Sbjct: 724 LSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIR 783

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           K PG S IEV + VH F VGD++HP S  IY+ L E++  L K G+  +   + ++ ++E
Sbjct: 784 KEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQE 843

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            K+     HSEKLA+A+GL++  P   +R++KNLRVC +CHS  K  S++  REI+ RD 
Sbjct: 844 QKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKCTSEVTRREIVLRDV 903

Query: 691 NRFHHFKDGNCSCNDYW 707
            RFHHF  G+CSC DYW
Sbjct: 904 YRFHHFNSGSCSCGDYW 920



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 144/497 (28%), Positives = 252/497 (50%), Gaps = 25/497 (5%)

Query: 46  IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           + ++H+  +  GL   +   + LI++ A +  G +  A  VF+ +   + V W  ++ G+
Sbjct: 62  VLEIHATSVVRGLGADRLIGNLLIDLYAKN--GLVWQARQVFKELSSRDHVSWVAMLSGY 119

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
           + S     A + Y +M  +  +P  Y    +L +C K    ++G+ IHA V K    S+ 
Sbjct: 120 AQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSET 179

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           FV  +LI +Y   G  + A  VF      D V++  LI+G+A  G+ + A Q+FDEM + 
Sbjct: 180 FVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQL- 238

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
                P+  TV ++L+ACA +G L+ G  + S +   G+  +     +L+D+Y KCGD+ 
Sbjct: 239 -SGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIE 297

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
            A D+F   ++ +V+ WN+M+  Y   SD  ++  +F QM  + I PN  T+  +L  C 
Sbjct: 298 TAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCT 357

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
             G ++LG+ IH+   KN  + +++ +   LIDMY+K G +  A ++ + +  + + SW 
Sbjct: 358 CTGQIELGEQIHSLSIKNGFE-SDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWT 416

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN-----HAGLLDIGRQYFN 460
           +MI+G   H   ++AL+ F  M   G+ PD+I      SAC        GL    R Y +
Sbjct: 417 SMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVS 476

Query: 461 AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL---GACRVH 517
               D  I      +  +V+L  R G  +EA +L + +E K D   W  L+   G  R++
Sbjct: 477 GYAADISI------WNTLVNLYARCGRSEEAFSLFREIEHK-DEITWNGLISGFGQSRLY 529

Query: 518 GR-----LELGESVAKH 529
            +     +++G++ AK+
Sbjct: 530 KQALMVFMKMGQAGAKY 546



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 96/228 (42%), Gaps = 37/228 (16%)

Query: 25  YKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYAL 84
           Y +     +++ L+   +++  KQVH + +KTG H ++  ++  + I      G +  A 
Sbjct: 546 YNVFTFISAISALANLADIKQGKQVHGRAVKTG-HTSETEVANAL-ISLYGKCGSIEDAK 603

Query: 85  LVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS 144
           ++F  +   N+V WN II   S     + A+  + +M   G  PN  TF  +L +C+ + 
Sbjct: 604 MIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVG 663

Query: 145 AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
            + EG                    S+ N+Y  N              + D  +    I 
Sbjct: 664 LVEEGLS---------------YFKSMSNVYGLN-------------PIPDHYACVVDIL 695

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
           G A  G LD AR+  DEMPI       N     T+LSAC    ++E+G
Sbjct: 696 GRA--GQLDRARRFVDEMPI-----TANAMIWRTLLSACKVHKNIEIG 736


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 258/674 (38%), Positives = 407/674 (60%), Gaps = 18/674 (2%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           KQVH+  ++ G  N+ F ++ L+ +      G L+ + ++  +    + V WN ++    
Sbjct: 222 KQVHAYGLRKGELNS-FIINTLVAM--YGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLC 278

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG-LESDP 165
            +   + A+++   M+L G  P+ +T   +L +C+ +  +  GK++HA+ LK G L+ + 
Sbjct: 279 QNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 338

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           FV ++L++MY    ++ S R VF+    R    + A+I GY+   +  +A  LF  M   
Sbjct: 339 FVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGME-E 397

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
               + N +T+  V+ AC   G+      +   +   GL  +  V N L+DMYS+ G + 
Sbjct: 398 SAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKID 457

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-----------QSNIEPND 334
            A  +F  +E RD+++WN MI GY  +  +++AL+L  +M            + +++PN 
Sbjct: 458 IAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNS 517

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           +T +++LP+CA L AL  GK IHAY  KN+    +V++ ++L+DMYAKCG ++ + +VFD
Sbjct: 518 ITLMTILPSCAALSALAKGKEIHAYAIKNNLA-TDVAVGSALVDMYAKCGCLQMSRKVFD 576

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
            +  K + +WN +I    MHG   +A+ L   M+ +G++P+++TF+ V +AC+H+G++D 
Sbjct: 577 QIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDE 636

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD-AAIWTSLLGA 513
           G + F  M  DY + P   HY C+VDLLGRAG   EA  L+  M    + A  W+SLLGA
Sbjct: 637 GLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGA 696

Query: 514 CRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVP 573
            R+H  LE+GE  A++L++LEP     YVLL+N+Y+ AG WD    +R  + ++G++K P
Sbjct: 697 SRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEP 756

Query: 574 GCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKE 633
           GCS IE G  VH+F+ GD  HPQS+ +   L+ +   + K G+VPDTS VL++++E+ KE
Sbjct: 757 GCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKE 816

Query: 634 GALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRF 693
             L  HSEKLAIA+G+++T PGT IR+ KNLRVC +CH ATK ISKI +REII RD  RF
Sbjct: 817 ILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRF 876

Query: 694 HHFKDGNCSCNDYW 707
           H FK+G CSC DYW
Sbjct: 877 HRFKNGTCSCGDYW 890



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 132/419 (31%), Positives = 215/419 (51%), Gaps = 10/419 (2%)

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
           W +++R    S+    A+  YV MI+ G  P+ Y FP +LK+ A +  +  GKQIHAHV 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 158 KLGLESDPF-VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDAR 216
           K G   D   V  +L+N+Y + G+  +   VF++ S R+ VS+ +LI+   S    + A 
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 217 QLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS---NLHVTNA 273
           + F  M   +EN  P+  T+V+V++AC+++   E G  +   +  +GL     N  + N 
Sbjct: 185 EAFRCM--LDENVEPSSFTLVSVVTACSNLPMPE-GLMMGKQVHAYGLRKGELNSFIINT 241

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           L+ MY K G L  ++ L  S   RD+++WN ++          EAL   R+M+   +EP+
Sbjct: 242 LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 301

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
           + T  SVLPAC++L  L  GK +HAY  KN     N  + ++L+DMY  C  + +  +VF
Sbjct: 302 EFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVF 361

Query: 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRM-IGEGLQPDDITFVGVLSACNHAGLL 452
           DGM  + +  WNAMI+G + +    +AL LF  M    GL  +  T  GV+ AC  +G  
Sbjct: 362 DGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAF 421

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
              ++  +  +    +         ++D+  R G  D A  +   ME + D   W +++
Sbjct: 422 S-RKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDR-DLVTWNTMI 478



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 134/503 (26%), Positives = 244/503 (48%), Gaps = 26/503 (5%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ALL    ++Q++   KQ+H+ + K G       ++  + +      GD      VF+ I 
Sbjct: 102 ALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTL-VNLYRKCGDFGAVYKVFDRIS 160

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKI---SAISE 148
           E NQV WN++I          +A++ +  M+     P+++T   ++ +C+ +     +  
Sbjct: 161 ERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMM 220

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           GKQ+HA+ L+ G E + F+  +L+ MY + G+L S++++      RD V++  +++    
Sbjct: 221 GKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQ 279

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG-LGSN 267
              L +A +   EM +  E   P+E T+ +VL AC+H+  L  G  + +    +G L  N
Sbjct: 280 NEQLLEALEYLREMVL--EGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDEN 337

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
             V +AL+DMY  C  ++  R +F+ +  R +  WN MI GY+     KEAL+LF  M +
Sbjct: 338 SFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEE 397

Query: 328 S-NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
           S  +  N  T   V+PAC   GA    + IH ++ K     +   +  +L+DMY++ G I
Sbjct: 398 SAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRF-VQNTLMDMYSRLGKI 456

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM------IGEG-----LQPD 435
             A ++F  M  + L +WN MI+G       + AL L  +M      + +G     L+P+
Sbjct: 457 DIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPN 516

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
            IT + +L +C     L  G++     I++  ++  +     +VD+  + G    +  + 
Sbjct: 517 SITLMTILPSCAALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMSRKVF 575

Query: 496 KTMEMKPDAAIWTSLLGACRVHG 518
             +  K +   W  ++ A  +HG
Sbjct: 576 DQIPQK-NVITWNVIIMAYGMHG 597



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 131/240 (54%), Gaps = 8/240 (3%)

Query: 302 WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361
           W  ++     ++  +EA++ +  M+   I+P++  F ++L A A L  ++LGK IHA++ 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421
           K    +++V++  +L+++Y KCG+  A  +VFD +  +   SWN++IS L    K + AL
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGL---LDIGRQYFNAMIQDYKISPKLQHYGCM 478
             F  M+ E ++P   T V V++AC++  +   L +G+Q     ++  +++  +     +
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFI--INTL 242

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA-CRVHGRLELGESVAKHLLE-LEPE 536
           V + G+ G    ++ LL +   + D   W ++L + C+    LE  E + + +LE +EP+
Sbjct: 243 VAMYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 301


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 269/676 (39%), Positives = 403/676 (59%), Gaps = 9/676 (1%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICA-VSPFGDLSYALLVFETIRE 92
           L L +   ++   + VH+Q+   GL     A + L  + A     GD   A  VF+ +  
Sbjct: 232 LKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGD---ARRVFDRMPA 288

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILS-GFVPNTYTFPFILKSCAKISAISEGKQ 151
            ++V WN ++ G++ +     A+   VRM    G  P+  T   +L +CA   A+   ++
Sbjct: 289 RDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACRE 348

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +HA  ++ G +    V T+++++Y + G ++SAR VF+    R++VS+ A+I GYA  G 
Sbjct: 349 VHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGD 408

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
             +A  LF  M    E     + +V+  L AC  +G L+ G  V  L+   GL SN++V 
Sbjct: 409 ATEALALFKRMV--GEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVM 466

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           NALI MY KC     A  +F+ +  +  +SWN MI G T     ++A+ LF +M   N++
Sbjct: 467 NALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVK 526

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+  T +S++PA A +      +WIH Y  + H    +V + T+LIDMYAKCG +  A  
Sbjct: 527 PDSFTLVSIIPALADISDPLQARWIHGYSIRLHLD-QDVYVLTALIDMYAKCGRVSIARS 585

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           +F+    + + +WNAMI G   HG    A+ LF  M   G  P++ TF+ VLSAC+HAGL
Sbjct: 586 LFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGL 645

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           +D G++YF++M +DY + P ++HYG MVDLLGRAG   EA + ++ M M+P  +++ ++L
Sbjct: 646 VDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAML 705

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
           GAC++H  +EL E  A+ + ELEPE    +VLL+N+YA A  W DVA +RT +  KG++K
Sbjct: 706 GACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQK 765

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
            PG S +++ + +H F  G   H Q+K IY  L ++   ++  G+VPDT  + +D++++ 
Sbjct: 766 TPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIEEIKAVGYVPDTDSI-HDVEDDV 824

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           K   L+ HSEKLAIAYGLI T PGTTI+I KNLRVC +CH+ATKLIS +  REII RD  
Sbjct: 825 KAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCKDCHNATKLISLVTGREIIMRDIQ 884

Query: 692 RFHHFKDGNCSCNDYW 707
           RFHHFKDG CSC DYW
Sbjct: 885 RFHHFKDGKCSCGDYW 900



 Score =  225 bits (574), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 135/399 (33%), Positives = 206/399 (51%), Gaps = 12/399 (3%)

Query: 124 SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELES 183
           SG  P   TF  +LK CA  + ++ G+ +HA +   GL  +    T+L NMYA+      
Sbjct: 219 SGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGD 278

Query: 184 ARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC 243
           AR VF++   RD V++ AL+ GYA  G  + A  +   M   E+   P+  T+V+VL AC
Sbjct: 279 ARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQ-EEDGERPDAVTLVSVLPAC 337

Query: 244 AHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN 303
           A   +L     V +     G    ++V+ A++D+Y KCG +  AR +F+ ++ R+ +SWN
Sbjct: 338 ADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWN 397

Query: 304 VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363
            MI GY    D  EAL LF++M+   ++  DV+ L+ L AC  LG LD G+ +H  + + 
Sbjct: 398 AMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRI 457

Query: 364 HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSL 423
             + +NV++  +LI MY KC     A QVFD +GYKT  SWNAMI G   +G ++ A+ L
Sbjct: 458 GLE-SNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRL 516

Query: 424 FSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQH----YGCMV 479
           FSRM  E ++PD  T V ++ A     L DI        I  Y I   L         ++
Sbjct: 517 FSRMQLENVKPDSFTLVSIIPA-----LADISDPLQARWIHGYSIRLHLDQDVYVLTALI 571

Query: 480 DLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           D+  + G    A +L  +   +     W +++     HG
Sbjct: 572 DMYAKCGRVSIARSLFNSARDR-HVITWNAMIHGYGSHG 609


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 258/674 (38%), Positives = 407/674 (60%), Gaps = 18/674 (2%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           KQVH+  ++ G  N+ F ++ L+ +      G L+ + ++  +    + V WN ++    
Sbjct: 135 KQVHAYGLRKGELNS-FIINTLVAM--YGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLC 191

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG-LESDP 165
            +   + A+++   M+L G  P+ +T   +L +C+ +  +  GK++HA+ LK G L+ + 
Sbjct: 192 QNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 251

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           FV ++L++MY    ++ S R VF+    R    + A+I GY+   +  +A  LF  M   
Sbjct: 252 FVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGME-E 310

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
               + N +T+  V+ AC   G+      +   +   GL  +  V N L+DMYS+ G + 
Sbjct: 311 SAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKID 370

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-----------QSNIEPND 334
            A  +F  +E RD+++WN MI GY  +  +++AL+L  +M            + +++PN 
Sbjct: 371 IAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNS 430

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           +T +++LP+CA L AL  GK IHAY  KN+    +V++ ++L+DMYAKCG ++ + +VFD
Sbjct: 431 ITLMTILPSCAALSALAKGKEIHAYAIKNNLA-TDVAVGSALVDMYAKCGCLQMSRKVFD 489

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
            +  K + +WN +I    MHG   +A+ L   M+ +G++P+++TF+ V +AC+H+G++D 
Sbjct: 490 QIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDE 549

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD-AAIWTSLLGA 513
           G + F  M  DY + P   HY C+VDLLGRAG   EA  L+  M    + A  W+SLLGA
Sbjct: 550 GLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGA 609

Query: 514 CRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVP 573
            R+H  LE+GE  A++L++LEP     YVLL+N+Y+ AG WD    +R  + ++G++K P
Sbjct: 610 SRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEP 669

Query: 574 GCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKE 633
           GCS IE G  VH+F+ GD  HPQS+ +   L+ +   + K G+VPDTS VL++++E+ KE
Sbjct: 670 GCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKE 729

Query: 634 GALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRF 693
             L  HSEKLAIA+G+++T PGT IR+ KNLRVC +CH ATK ISKI +REII RD  RF
Sbjct: 730 ILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRF 789

Query: 694 HHFKDGNCSCNDYW 707
           H FK+G CSC DYW
Sbjct: 790 HRFKNGTCSCGDYW 803



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/396 (31%), Positives = 204/396 (51%), Gaps = 10/396 (2%)

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF-VHTSLINMYAQNG 179
           MI+ G  P+ Y FP +LK+ A +  +  GKQIHAHV K G   D   V  +L+N+Y + G
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 180 ELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTV 239
           +  +   VF++ S R+ VS+ +LI+   S    + A + F  M   +EN  P+  T+V+V
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCM--LDENVEPSSFTLVSV 118

Query: 240 LSACAHMGSLELGNWVCSLIEGHGLGS---NLHVTNALIDMYSKCGDLVKARDLFESIEK 296
           ++AC+++   E G  +   +  +GL     N  + N L+ MY K G L  ++ L  S   
Sbjct: 119 VTACSNLPMPE-GLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGG 177

Query: 297 RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
           RD+++WN ++          EAL   R+M+   +EP++ T  SVLPAC++L  L  GK +
Sbjct: 178 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 237

Query: 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGK 416
           HAY  KN     N  + ++L+DMY  C  + +  +VFDGM  + +  WNAMI+G + +  
Sbjct: 238 HAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEH 297

Query: 417 ADKALSLFSRM-IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY 475
             +AL LF  M    GL  +  T  GV+ AC  +G     ++  +  +    +       
Sbjct: 298 DKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFS-RKEAIHGFVVKRGLDRDRFVQ 356

Query: 476 GCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
             ++D+  R G  D A  +   ME + D   W +++
Sbjct: 357 NTLMDMYSRLGKIDIAMRIFGKMEDR-DLVTWNTMI 391



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 134/503 (26%), Positives = 244/503 (48%), Gaps = 26/503 (5%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ALL    ++Q++   KQ+H+ + K G       ++  + +      GD      VF+ I 
Sbjct: 15  ALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTL-VNLYRKCGDFGAVYKVFDRIS 73

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKI---SAISE 148
           E NQV WN++I          +A++ +  M+     P+++T   ++ +C+ +     +  
Sbjct: 74  ERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMM 133

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           GKQ+HA+ L+ G E + F+  +L+ MY + G+L S++++      RD V++  +++    
Sbjct: 134 GKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQ 192

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG-LGSN 267
              L +A +   EM +  E   P+E T+ +VL AC+H+  L  G  + +    +G L  N
Sbjct: 193 NEQLLEALEYLREMVL--EGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDEN 250

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
             V +AL+DMY  C  ++  R +F+ +  R +  WN MI GY+     KEAL+LF  M +
Sbjct: 251 SFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEE 310

Query: 328 S-NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
           S  +  N  T   V+PAC   GA    + IH ++ K     +   +  +L+DMY++ G I
Sbjct: 311 SAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRF-VQNTLMDMYSRLGKI 369

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM------IGEG-----LQPD 435
             A ++F  M  + L +WN MI+G       + AL L  +M      + +G     L+P+
Sbjct: 370 DIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPN 429

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
            IT + +L +C     L  G++     I++  ++  +     +VD+  + G    +  + 
Sbjct: 430 SITLMTILPSCAALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMSRKVF 488

Query: 496 KTMEMKPDAAIWTSLLGACRVHG 518
             +  K +   W  ++ A  +HG
Sbjct: 489 DQIPQK-NVITWNVIIMAYGMHG 510



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 120/217 (55%), Gaps = 8/217 (3%)

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           M+   I+P++  F ++L A A L  ++LGK IHA++ K    +++V++  +L+++Y KCG
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
           +  A  +VFD +  +   SWN++IS L    K + AL  F  M+ E ++P   T V V++
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 445 ACNHAGL---LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK 501
           AC++  +   L +G+Q     ++  +++  +     +V + G+ G    ++ LL +   +
Sbjct: 121 ACSNLPMPEGLMMGKQVHAYGLRKGELNSFI--INTLVAMYGKLGKLASSKVLLGSFGGR 178

Query: 502 PDAAIWTSLLGA-CRVHGRLELGESVAKHLLE-LEPE 536
            D   W ++L + C+    LE  E + + +LE +EP+
Sbjct: 179 -DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 214


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 260/609 (42%), Positives = 377/609 (61%), Gaps = 49/609 (8%)

Query: 144 SAISEGKQIHAHVLKLGLESDPFVHTSLINMYA--QNGELESARLVFNKSSLRDAVSYTA 201
           SA  E +Q+HA  LK  + + PFV + L+ +Y+  +  +L  AR +F++   R  + +  
Sbjct: 27  SAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNT 86

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
           +I  Y    +  D   LF E+      ++P+  T+  V+  CA +G ++ G  +  L   
Sbjct: 87  IIKCYVENQFSHDGIVLFHELV---HEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALK 143

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVI-----------SWNVMIGGYT 310
            G GS++ V  +L++MYSKCG++  AR +F+ +  +DV+           SWN MI GY 
Sbjct: 144 IGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYM 203

Query: 311 HTSDYKEALMLFRQM-------------------------------LQSNIEPNDVTFLS 339
            + D+  AL LF QM                               L+    P+  T +S
Sbjct: 204 KSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVS 263

Query: 340 VLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK 399
           VL A + L  L  G+WIH+Y++KN  +L+ + L TSLI+MYAKCG I++A  VF  +  K
Sbjct: 264 VLSAVSGLAVLGKGRWIHSYMEKNGFELDGI-LGTSLIEMYAKCGCIESALTVFRAIQKK 322

Query: 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF 459
            +  W A+I GL +HG A+ AL+LF  M   GL+P+ I F+GVL+ACNHAGL+D GRQYF
Sbjct: 323 KVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYF 382

Query: 460 NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
           + M+ +YKI P L+HYGC+VD+L RAG  +EA+  ++ M + P+  IW SLLG  R HG+
Sbjct: 383 DMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGK 442

Query: 520 LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIE 579
           +++GE  A+ ++E+ PE  G Y+LLSNMYA +G W+ V+ +R  +  +G +K PGCSS+E
Sbjct: 443 IDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVE 502

Query: 580 VGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD-EEWKEGALSH 638
               +HEF+VGD  HPQ+K IY  + E+   L+  G VPDT++VL  ++ E+ KE  L +
Sbjct: 503 HKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELEN 562

Query: 639 HSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKD 698
           HSE+LAIA+GLI+ KPG  IRI+KNLRVC +CHS TKL+SKI++REII RD  RFHHFK+
Sbjct: 563 HSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKN 622

Query: 699 GNCSCNDYW 707
           G+CSC DYW
Sbjct: 623 GSCSCMDYW 631



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 131/450 (29%), Positives = 225/450 (50%), Gaps = 45/450 (10%)

Query: 23  PPYKLLQNQPS---LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGD 79
           P + L Q  P    L+L   C+  Q ++Q+H+  +KT + N  F  S+L+ + +     D
Sbjct: 6   PFHSLQQYLPHNLHLSLFQTCSAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKIND 65

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKS 139
           L YA  +F+ I+  + + WN II+ +  +      I  +  ++   ++P+ +T P ++K 
Sbjct: 66  LGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELV-HEYLPDNFTLPCVIKG 124

Query: 140 CAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK--------- 190
           CA++  + EGKQIH   LK+G  SD FV  SL+NMY++ GE++ AR VF+          
Sbjct: 125 CARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLW 184

Query: 191 SSLRDA--VSYTALITGYASRGYLDDARQLFDEMPIRE--------------ENFV---- 230
           +SL D   VS+ A+I GY   G  D A +LF +MPI +                F+    
Sbjct: 185 NSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVK 244

Query: 231 -----------PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYS 279
                      P+ +T+V+VLSA + +  L  G W+ S +E +G   +  +  +LI+MY+
Sbjct: 245 MFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYA 304

Query: 280 KCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS 339
           KCG +  A  +F +I+K+ V  W  +I G         AL LF +M ++ ++PN + F+ 
Sbjct: 305 KCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIG 364

Query: 340 VLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK 399
           VL AC + G +D G+     +   ++    +  +  L+D+  + G+++ A+   + M   
Sbjct: 365 VLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPIS 424

Query: 400 -TLASWNAMISGLAMHGKADKALSLFSRMI 428
                W +++ G   HGK D       R+I
Sbjct: 425 PNKVIWMSLLGGSRNHGKIDIGEYAAQRVI 454


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 255/676 (37%), Positives = 409/676 (60%), Gaps = 10/676 (1%)

Query: 35  ALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ++L  C  + ++++   +H  I K G+       + L+ +     F  L     +F+ + 
Sbjct: 280 SVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSM--YCKFNGLIDGRRIFDKMV 337

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             + V WN +I G+S       +IK ++ M+ + F P+  T   IL++C  +  +  GK 
Sbjct: 338 LRDAVSWNTMICGYSQVGLYEESIKLFMEMV-NQFKPDLLTITSILQACGHLGDLEFGKY 396

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +H +++  G E D      LINMYA+ G L +++ VF+    +D+VS+ ++I  Y   G 
Sbjct: 397 VHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGS 456

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
            D+A +LF  M   + +  P+  T V +LS    +G L LG  +   +   G  SN+ V+
Sbjct: 457 FDEAMKLFKMM---KTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVS 513

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N L+DMY+KCG++  +  +FE+++ RD+I+WN +I    H+ D    L +  +M    + 
Sbjct: 514 NTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVT 573

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+  T LS+LP C+ L A   GK IH  I K   + ++V +   LI+MY+KCG+++ + Q
Sbjct: 574 PDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLE-SDVPVGNVLIEMYSKCGSLRNSFQ 632

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VF  M  K + +W A+IS   M+G+  KA+  F  M   G+ PD + FV ++ AC+H+GL
Sbjct: 633 VFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGL 692

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           ++ G  YF+ M +DYKI P+++HY C+VDLL R+ L D+AE  + +M +KPD++IW +LL
Sbjct: 693 VEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALL 752

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
            ACR+ G  E+ + V++ ++EL P++ G YVL+SN+YA  G+WD V +IR  +  +G+KK
Sbjct: 753 SACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKK 812

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
            PGCS +E+ + V+ F  G K   Q + + ++L  +  L+ K G++ +   VL+D+DE+ 
Sbjct: 813 DPGCSWMEIQNKVYVFGTGTKFSEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDE 872

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           K   L  HSE+LAIA+GL++TKPGT ++++KNLRVC +CH+ TK ISKI  RE++ RD N
Sbjct: 873 KRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIXQRELLVRDAN 932

Query: 692 RFHHFKDGNCSCNDYW 707
           RFH FKDG CSC DYW
Sbjct: 933 RFHVFKDGACSCGDYW 948



 Score =  271 bits (694), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 160/483 (33%), Positives = 269/483 (55%), Gaps = 11/483 (2%)

Query: 33  SLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           S AL S  T  Q + ++HS II  GLH++    +KLI     + F D + +  VF     
Sbjct: 79  SRALASAATTTQ-LHKLHSLIITLGLHHSVIFSAKLIA--KYAHFRDPTSSFSVFRLASP 135

Query: 93  PNQV-IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
            N V  WN+IIR  + +     A+  Y         P+TYTFP ++ +CA +      K 
Sbjct: 136 SNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKS 195

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IH  VL +G  SD ++  +LI+MY +  +L+ AR VF +  LRD VS+ +LI+GY + GY
Sbjct: 196 IHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGY 255

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
            ++A +++     R    VP+  T+ +VL AC  +GS+E G+ +  LIE  G+  ++ V 
Sbjct: 256 WNEALEIY--YRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVN 313

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N L+ MY K   L+  R +F+ +  RD +SWN MI GY+    Y+E++ LF +M+ +  +
Sbjct: 314 NGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMV-NQFK 372

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+ +T  S+L AC +LG L+ GK++H Y+  +  + +  +    LI+MYAKCGN+ A+++
Sbjct: 373 PDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTAS-NILINMYAKCGNLLASQE 431

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VF GM  K   SWN+MI+    +G  D+A+ LF +M+   ++PD +T+V +LS     G 
Sbjct: 432 VFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGD 490

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           L +G++  +  +     +  +     +VD+  + G   ++  + + M+ + D   W +++
Sbjct: 491 LXLGKE-LHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTII 548

Query: 512 GAC 514
            +C
Sbjct: 549 ASC 551



 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 145/488 (29%), Positives = 264/488 (54%), Gaps = 12/488 (2%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K +H +++  G  +  +  + LI++     F DL  A  VFE +   + V WN++I G++
Sbjct: 194 KSIHDRVLXMGFGSDLYIGNALIDM--YCRFNDLDKARKVFEEMPLRDVVSWNSLISGYN 251

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +     A++ Y R    G VP++YT   +L++C  + ++ EG  IH  + K+G++ D  
Sbjct: 252 ANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVI 311

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V+  L++MY +   L   R +F+K  LRDAVS+  +I GY+  G  +++ +LF EM    
Sbjct: 312 VNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMV--- 368

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
             F P+  T+ ++L AC H+G LE G +V   +   G   +   +N LI+MY+KCG+L+ 
Sbjct: 369 NQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLA 428

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           ++++F  ++ +D +SWN MI  Y     + EA+ LF+ M++++++P+ VT++ +L     
Sbjct: 429 SQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQ 487

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
           LG L LGK +H  + K     +N+ +  +L+DMYAKCG +  + +VF+ M  + + +WN 
Sbjct: 488 LGDLXLGKELHCDLAKMGFN-SNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNT 546

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
           +I+        +  L + SRM  EG+ PD  T + +L  C+       G++  +  I   
Sbjct: 547 IIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKE-IHGCIFKL 605

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
            +   +     ++++  + G    +  + K M+ K D   WT+L+ AC ++G    G+  
Sbjct: 606 GLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTALISACGMYGE---GKKA 661

Query: 527 AKHLLELE 534
            +   E+E
Sbjct: 662 VRAFGEME 669



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 130/458 (28%), Positives = 212/458 (46%), Gaps = 38/458 (8%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           F  I ++ A  +  ++  ++H+ ++ LGL         LI  YA   +  S+  VF  +S
Sbjct: 75  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLAS 134

Query: 193 LRDAV-SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL 251
             + V  + ++I      G   +A  L+ E   +     P+  T  +V++ACA +   E+
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSE--TQRIRLQPDTYTFPSVINACAGLLDFEM 192

Query: 252 GNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311
              +   +   G GS+L++ NALIDMY +  DL KAR +FE +  RDV+SWN +I GY  
Sbjct: 193 AKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNA 252

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
              + EAL ++ +     + P+  T  SVL AC  LG+++ G  IH  I+K   K  +V 
Sbjct: 253 NGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIK-KDVI 311

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
           +   L+ MY K   +    ++FD M  +   SWN MI G +  G  ++++ LF  M+ + 
Sbjct: 312 VNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ- 370

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD-YKISPKLQH---------------- 474
            +PD +T   +L AC H G L+ G+   + MI   Y+      +                
Sbjct: 371 FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQ 430

Query: 475 -------------YGCMVDLLGRAGLFDEAEALLKTM--EMKPDAAIWTSLLGACRVHGR 519
                        +  M+++  + G FDEA  L K M  ++KPD+  +  LL      G 
Sbjct: 431 EVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGD 490

Query: 520 LELGESVAKHLLELE-PENPGAYVLLSNMYAGAGRWDD 556
           L LG+ +   L ++    N      L +MYA  G   D
Sbjct: 491 LXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGD 528


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 275/678 (40%), Positives = 410/678 (60%), Gaps = 10/678 (1%)

Query: 34  LALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           +A L  C +   IKQ   +H+ ++K+  +   F  + LI + A   FG +  A  +F  +
Sbjct: 286 VAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYA--RFGKMGEAANIFYNM 343

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            + + + WN+++ G   +     A++FY  M  +G  P+      I+ + A+      G 
Sbjct: 344 DDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGM 403

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           QIHA+ +K GL+SD  V  SL++MYA+   ++    +F+K   +D VS+T +I G+A  G
Sbjct: 404 QIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNG 463

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
               A +LF E+ +  E    +   + ++L AC+ +  +     + S I   GL S+L +
Sbjct: 464 SHSRALELFREVQL--EGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGL-SDLVL 520

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            N ++D+Y +CG++  A  +FE IE +DV+SW  MI  Y H     EAL LF  M ++ +
Sbjct: 521 QNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGV 580

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           EP+ ++ +S+L A A L AL  GK IH ++ +    L   SL ++L+DMYA+CG ++ + 
Sbjct: 581 EPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEG-SLASTLVDMYARCGTLEKSR 639

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
            VF+ +  K L  W +MI+   MHG    A+ LF RM  E + PD I FV VL AC+H+G
Sbjct: 640 NVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSG 699

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L++ GR++  +M  +Y++ P  +HY C+VDLLGRA   +EA   +K ME++P A +W +L
Sbjct: 700 LMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCAL 759

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           LGAC++H   ELGE  A+ LLE++PENPG YVL+SN+Y+   RW DV  +R R+   G+K
Sbjct: 760 LGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLK 819

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEI-DALLEKSGFVPDTSEVLYDMDE 629
           K PGCS IEVG+ VH F+  DK HPQS  IY  L +I + L ++ G+V  T  VL++  E
Sbjct: 820 KNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKE 879

Query: 630 EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
           E K   L  HSE+LAIAYG+++T  G ++RI KNLRVCG+CH+  KLISK F RE++ RD
Sbjct: 880 EEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRD 939

Query: 690 RNRFHHFKDGNCSCNDYW 707
            NRFHHFK G CSC D W
Sbjct: 940 ANRFHHFKGGVCSCGDVW 957



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 150/501 (29%), Positives = 258/501 (51%), Gaps = 11/501 (2%)

Query: 47  KQVHSQIIKT-GLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           +QVH+ +I +  L N+ F  ++L+ +      G L  A  +F+ +       WN +I  +
Sbjct: 98  QQVHAHMITSNALFNSVFLSTRLVFM--YGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAY 155

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
             +  P+ +++ Y  M +SG   +  TFP ILK+C  +     G ++H   +K G  S  
Sbjct: 156 VTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIV 215

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLR-DAVSYTALITGYASRGYLDDARQLFDEMPI 224
           FV  S++ MY +  +L  AR +F++   + D VS+ ++I+ Y+S G   +A +LF EM  
Sbjct: 216 FVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEM-- 273

Query: 225 REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
           ++ +  PN  T V  L AC     ++ G ++ + +       N+ V NALI MY++ G +
Sbjct: 274 QKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKM 333

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
            +A ++F +++  D ISWN M+ G+     Y EAL  + +M  +  +P+ V  +S++ A 
Sbjct: 334 GEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAAS 393

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
           A  G    G  IHAY  KN    +++ +  SL+DMYAK  ++K  + +FD M  K + SW
Sbjct: 394 ARSGNTLHGMQIHAYAMKNGLD-SDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSW 452

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
             +I+G A +G   +AL LF  +  EG+  D +    +L AC+   L+   ++  + +I+
Sbjct: 453 TTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIR 512

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGE 524
                  LQ+   +VD+ G  G  D A  + + +E K D   WTS++ +C VH  L    
Sbjct: 513 KGLSDLVLQN--GIVDVYGECGNVDYAARMFELIEFK-DVVSWTSMI-SCYVHNGLANEA 568

Query: 525 SVAKHLLELEPENPGAYVLLS 545
               HL++     P +  L+S
Sbjct: 569 LELFHLMKETGVEPDSISLVS 589



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 115/380 (30%), Positives = 187/380 (49%), Gaps = 7/380 (1%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKL-GLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
           +L+ C    A+SEG+Q+HAH++    L +  F+ T L+ MY + G L  A  +F+    +
Sbjct: 84  VLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHK 143

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
              ++ A+I  Y + G    + +L+ EM  R      +  T   +L AC  +     G  
Sbjct: 144 TIFTWNAMIGAYVTNGEPLGSLELYREM--RVSGIPLDACTFPCILKACGLLKDRRYGAE 201

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI-EKRDVISWNVMIGGYTHTS 313
           V  L    G  S + V N+++ MY+KC DL  AR LF+ + EK DV+SWN MI  Y+   
Sbjct: 202 VHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNG 261

Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
              EAL LF +M ++++ PN  TF++ L AC     +  G +IHA + K+   + NV + 
Sbjct: 262 QSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYI-NVFVA 320

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
            +LI MYA+ G +  A  +F  M      SWN+M+SG   +G   +AL  +  M   G +
Sbjct: 321 NALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQK 380

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
           PD +  + +++A   +G    G Q  +A      +   LQ    +VD+  +       + 
Sbjct: 381 PDLVAVISIIAASARSGNTLHGMQ-IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDC 439

Query: 494 LLKTMEMKPDAAIWTSLLGA 513
           +   M  K D   WT+++  
Sbjct: 440 IFDKMPDK-DVVSWTTIIAG 458



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 90/186 (48%), Gaps = 1/186 (0%)

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
           D  + SVL  C    AL  G+ +HA++  ++   N+V L T L+ MY KCG +  AE++F
Sbjct: 78  DEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLF 137

Query: 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLD 453
           DGM +KT+ +WNAMI     +G+   +L L+  M   G+  D  TF  +L AC       
Sbjct: 138 DGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRR 197

Query: 454 IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
            G +     I++  +S        +V +  +    + A  L   M  K D   W S++ A
Sbjct: 198 YGAEVHGLAIKEGYVSIVFVA-NSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISA 256

Query: 514 CRVHGR 519
              +G+
Sbjct: 257 YSSNGQ 262


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 266/679 (39%), Positives = 408/679 (60%), Gaps = 14/679 (2%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEI---CAVSPFGDLSYALLVFE 88
           +LLS C +   +   +Q+HS +IK G+ +       L+++   C+     D+  A  +F 
Sbjct: 319 SLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCS-----DIKTAHEMFL 373

Query: 89  TIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE 148
           T +  N V+WN ++       +   + + + +M + G +PN +T+P IL++C  + A+  
Sbjct: 374 TAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDL 433

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           G+QIH  V+K G + + +V + LI+MYA++G+L++A ++    +  D VS+TALI+GYA 
Sbjct: 434 GEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQ 493

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
                +A + F EM  R      +     + +SACA + +L  G  + +     G   +L
Sbjct: 494 HNLFAEALKHFKEMLNR--GIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDL 551

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
            + NAL+ +Y++CG + +A   FE I+ +D ISWN +I G+  +   ++AL +F QM ++
Sbjct: 552 SIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRA 611

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            +E +  TF S + A A +  +  GK IHA I K     +++ +  +LI  YAKCG+I+ 
Sbjct: 612 KLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFD-SDIEVSNALITFYAKCGSIED 670

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A + F  M  K   SWNAMI+G + HG  ++A++LF +M   G  P+ +TFVGVLSAC+H
Sbjct: 671 ARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSH 730

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
            GL+  G  YF +M +++ + PK  HY C+VDL+ RAG    A   ++ M ++PDA IW 
Sbjct: 731 VGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWR 790

Query: 509 SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568
           +LL AC VH  +E+GE  A+HLLELEPE+   YVLLSNMYA +G+WD     R  + ++G
Sbjct: 791 TLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRG 850

Query: 569 MKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
           +KK PG S IEV + VH F VGD++HP +  IYE L E++    + G+  D   +L D++
Sbjct: 851 VKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELNKKAAEIGYFQDRYSLLNDVE 910

Query: 629 EEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIAR 688
           +E K+  +  HSEKLAI +GL+S      I ++KNLRVC +CHS  K +SKI NR II R
Sbjct: 911 QEQKDPTVYIHSEKLAITFGLLSLSDTVPIHVMKNLRVCKDCHSWIKFVSKISNRAIIVR 970

Query: 689 DRNRFHHFKDGNCSCNDYW 707
           D  RFHHF+ G CSC DYW
Sbjct: 971 DAYRFHHFEGGICSCKDYW 989



 Score =  242 bits (617), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 155/476 (32%), Positives = 244/476 (51%), Gaps = 9/476 (1%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +Q+H++II  GL  +    + LI + A +  G +  A  VF+ +   + V W  +I G S
Sbjct: 132 EQIHARIICHGLLCSPIISNPLIGLYAKN--GLIISARKVFDNLCTKDSVSWVAMISGFS 189

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +     AI  +  M  +G  P  Y F  +L  C KI     G+Q+HA V K G   + +
Sbjct: 190 QNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETY 249

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V  +L+ +Y++     SA  VF+K   +D VS+ +LI+G A +G+ D A +LF +M  + 
Sbjct: 250 VCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKM--KR 307

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           +   P+  TV ++LSACA  G+L  G  + S +   G+ S++ V  AL+D+Y  C D+  
Sbjct: 308 DYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKT 367

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A ++F + +  +V+ WNVM+  +    +  E+  +FRQM    + PN  T+ S+L  C  
Sbjct: 368 AHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTS 427

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
           +GALDLG+ IH  + K   +  NV + + LIDMYAK G +  A  +   +    + SW A
Sbjct: 428 VGALDLGEQIHTQVIKTGFQF-NVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTA 486

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ-YFNAMIQD 465
           +ISG A H    +AL  F  M+  G+Q D+I F   +SAC     L+ GRQ +  + +  
Sbjct: 487 LISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSG 546

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
           Y  S  L     +V L  R G   EA    + ++ K D+  W  L+      G  E
Sbjct: 547 Y--SEDLSIGNALVSLYARCGRIKEAYLEFEKIDAK-DSISWNGLISGFAQSGYCE 599



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 148/511 (28%), Positives = 252/511 (49%), Gaps = 22/511 (4%)

Query: 31  QPSLALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVF 87
           Q  + LL  C N   +   K++H +I+K G  N     +KL+++      GDL   + VF
Sbjct: 11  QTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDV--YFALGDLDGVVKVF 68

Query: 88  ETIREPNQVI--WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS- 144
           E +  PN+ +  W+ II G          +  +  MI     P   +F  +L++C+    
Sbjct: 69  EDM--PNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRI 126

Query: 145 AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
            I   +QIHA ++  GL   P +   LI +YA+NG + SAR VF+    +D+VS+ A+I+
Sbjct: 127 GIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMIS 186

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
           G++  GY ++A  LF EM        P      +VLS C  +   ++G  + +L+  +G 
Sbjct: 187 GFSQNGYEEEAIHLFCEM--HTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGS 244

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
               +V NAL+ +YS+  + V A  +F  ++ +D +S+N +I G         AL LF +
Sbjct: 245 SLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTK 304

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           M +  ++P+ VT  S+L ACA  GAL  G+ +H+Y+ K     +++ +  +L+D+Y  C 
Sbjct: 305 MKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGIS-SDMIVEGALLDLYVNCS 363

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
           +IK A ++F     + +  WN M+          ++  +F +M  +GL P+  T+  +L 
Sbjct: 364 DIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILR 423

Query: 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC--MVDLLGRAGLFDEAEALLKTMEMKP 502
            C   G LD+G Q    +I   K   +   Y C  ++D+  + G  D A  +L+T+  + 
Sbjct: 424 TCTSVGALDLGEQIHTQVI---KTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTL-TED 479

Query: 503 DAAIWTSLLGACRVHGRLELGESVAKHLLEL 533
           D   WT+L+     H    L     KH  E+
Sbjct: 480 DVVSWTALISGYAQHN---LFAEALKHFKEM 507



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 137/479 (28%), Positives = 231/479 (48%), Gaps = 41/479 (8%)

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
           G   N  T+ ++L  C    ++ E K++H  +LKLG  ++  +   L+++Y   G+L+  
Sbjct: 5   GICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGV 64

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
             VF     R   S+  +I+G+  +   +    LF  M   EEN  P E +  +VL AC+
Sbjct: 65  VKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMI--EENVSPTEISFASVLRACS 122

Query: 245 -HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN 303
            H   +     + + I  HGL  +  ++N LI +Y+K G ++ AR +F+++  +D +SW 
Sbjct: 123 GHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWV 182

Query: 304 VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363
            MI G++     +EA+ LF +M  + I P    F SVL  C  +   D+G+ +HA + K 
Sbjct: 183 AMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKY 242

Query: 364 HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSL 423
              L    +  +L+ +Y++  N  +AE+VF  M  K   S+N++ISGLA  G +D AL L
Sbjct: 243 GSSLETY-VCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALEL 301

Query: 424 FSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL-- 481
           F++M  + L+PD +T   +LSAC   G L  G Q  + +I+   IS  +   G ++DL  
Sbjct: 302 FTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKA-GISSDMIVEGALLDLYV 360

Query: 482 -----------------------------LGRAGLFDEAEALLKTMEMK---PDAAIWTS 509
                                         G+     E+  + + M++K   P+   + S
Sbjct: 361 NCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPS 420

Query: 510 LLGACRVHGRLELGESVAKHLLELEPE-NPGAYVLLSNMYAGAGRWDDVATI-RTRLND 566
           +L  C   G L+LGE +   +++   + N     +L +MYA  G+ D    I RT   D
Sbjct: 421 ILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTED 479


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 287/710 (40%), Positives = 402/710 (56%), Gaps = 58/710 (8%)

Query: 14  ILHFPP----------SSDPPYKLLQ-NQPSLA------LLSKCTNMQNIKQVHSQIIKT 56
           +LHFP           SS P  +L Q N P         +L    +++ ++ VHS+II  
Sbjct: 10  LLHFPEFRKFQTRKVTSSVPKLELDQKNSPKETAFMLGQVLDTYPDLKTLRTVHSRIISE 69

Query: 57  GLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIK 116
            L        KL+   A +   D++ A  VF+ I E N +I N +IR +  +      I+
Sbjct: 70  DLRYNSSLGVKLMR--AYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQ 127

Query: 117 FYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYA 176
            +  M      P+ YTFP +LK+C+    I  GK+IH    K+GL S  FV   L++MY 
Sbjct: 128 VFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYG 187

Query: 177 QNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTV 236
           + G L  ARLV ++ S RD VS+ +L+ GYA     DDA                     
Sbjct: 188 KCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDA--------------------- 226

Query: 237 VTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK 296
              L  C  M S+++          H  G+   +  A+ +  ++  +++  +D+F  + K
Sbjct: 227 ---LEVCREMESVKIS---------HDAGTMASLLPAVSNTTTE--NVMYVKDMFFKMGK 272

Query: 297 RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
           + ++SWNVMIG Y   +   EA+ L+  M     EP+ V+  SVLPAC    AL LGK I
Sbjct: 273 KSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKI 332

Query: 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGK 416
           H YI++  + + N+ L  +LIDMYAKCG +  A  VF+ M  + + SW AMIS     G+
Sbjct: 333 HGYIERK-KLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGR 391

Query: 417 ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG 476
              A++LFS+M   GL PD I FV  L+AC+HAGLL+ GR  F  M   YKI+P+L+H  
Sbjct: 392 GCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLA 451

Query: 477 CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536
           CMVDLLGRAG   EA   ++ M M+P+  +W +LLGACRVH   ++G   A  L +L PE
Sbjct: 452 CMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAPE 511

Query: 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQ 596
             G YVLLSN+YA AGRW++V  IR  +  KG+KK PG S++EV  ++H FLVGD+ HPQ
Sbjct: 512 QSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQ 571

Query: 597 SKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTK--- 653
           S  IY  LD +   +++ G+VPD+   L+D++EE KE  L+ HSEKLAI + L++T+   
Sbjct: 572 SAEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTEEED 631

Query: 654 PGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSC 703
               IRI KNLR+CG+CH A KLIS+I +REII RD NRFH F+ G CSC
Sbjct: 632 SNNAIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSC 681


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 280/680 (41%), Positives = 402/680 (59%), Gaps = 16/680 (2%)

Query: 35   ALLSKCTNMQNI---KQVHSQIIKTGLHNT---QFALSKLIEICAVSPFGDLSYALLVFE 88
            +LLS C+++  +   KQ HS  IK G+ +    + AL  L   C+     D+  A   F 
Sbjct: 377  SLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCS-----DIKTAHEFFL 431

Query: 89   TIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE 148
            +    N V+WN ++  + L  +   + K + +M + G  PN +T+P IL++C+ + A+  
Sbjct: 432  STETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDL 491

Query: 149  GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
            G+QIH  VLK G + + +V + LI+MYA+ G+L+ A  +F +   +D VS+TA+I GYA 
Sbjct: 492  GEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQ 551

Query: 209  RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
                 +A  LF EM  +++    +     + +SACA + +L  G  + +     G   +L
Sbjct: 552  HEKFAEALNLFKEM--QDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDL 609

Query: 269  HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
             V NAL+ +Y++CG +  A   F+ I  +D ISWN +I G+  +   +EAL LF QM ++
Sbjct: 610  SVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKA 669

Query: 329  NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN-HQKLNNVSLWTSLIDMYAKCGNIK 387
              E N  TF   + A A +  + LGK IHA I K  H     VS    LI +YAKCGNI 
Sbjct: 670  GQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVS--NVLITLYAKCGNID 727

Query: 388  AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
             AE+ F  M  K   SWNAM++G + HG   KALSLF  M   G+ P+ +TFVGVLSAC+
Sbjct: 728  DAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACS 787

Query: 448  HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
            H GL+D G +YF +M + + + PK +HY C+VDLLGR+GL   A   ++ M ++PDA + 
Sbjct: 788  HVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVC 847

Query: 508  TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
             +LL AC VH  +++GE  A HLLELEP++   YVLLSNMYA  G+W      R  + D+
Sbjct: 848  RTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDR 907

Query: 568  GMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
            G+KK PG S IEV + VH F  GD+ HP    IYE L +++ L  ++G++P T+ +L D 
Sbjct: 908  GVKKEPGRSWIEVNNSVHAFFAGDQKHPNVDKIYEYLRDLNELAAENGYIPQTNSLLNDA 967

Query: 628  DEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIA 687
            +   K      HSEKLAIA+GL+S    T I + KNLRVCG+CH+  K +SKI +R I+ 
Sbjct: 968  ERRQKGPTQIIHSEKLAIAFGLLSLSSSTPIHVFKNLRVCGDCHNWIKYVSKISDRVIVV 1027

Query: 688  RDRNRFHHFKDGNCSCNDYW 707
            RD  RFHHFK G CSC DYW
Sbjct: 1028 RDSYRFHHFKGGICSCKDYW 1047



 Score =  256 bits (653), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 160/477 (33%), Positives = 252/477 (52%), Gaps = 9/477 (1%)

Query: 46  IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           ++++H++ I  G  N+ F  + LI++   + F  L+ A  VF+ +++ + V W  ++ G 
Sbjct: 189 VEKIHARTITHGYENSLFVCNPLIDLYFKNGF--LNSAKKVFDGLQKRDSVSWVAMLSGL 246

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
           S S     A+  + +M  SG  P  Y F  +L +C K+     G+Q+H  VLK G   + 
Sbjct: 247 SQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLET 306

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           +V  +L+ +Y++ G    A  VFN    RD VSY +LI+G + +GY D A +LF +M + 
Sbjct: 307 YVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCL- 365

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
            +   P+  TV ++LSAC+ +G+L +G    S     G+ S++ +  AL+D+Y KC D+ 
Sbjct: 366 -DCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIK 424

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
            A + F S E  +V+ WNVM+  Y    +  E+  +F QM    IEPN  T+ S+L  C+
Sbjct: 425 TAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCS 484

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
            L A+DLG+ IH  + K   +  NV + + LIDMYAK G +  A ++F  +  K + SW 
Sbjct: 485 SLRAVDLGEQIHTQVLKTGFQF-NVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWT 543

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ-YFNAMIQ 464
           AMI+G A H K  +AL+LF  M  +G+  D+I F   +SAC     L+ G+Q +  A + 
Sbjct: 544 AMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVS 603

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
            Y  S  L     +V L  R G   +A      +  K D   W SL+      G  E
Sbjct: 604 GY--SDDLSVGNALVSLYARCGKVRDAYFAFDKIFSK-DNISWNSLISGFAQSGHCE 657



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 132/497 (26%), Positives = 245/497 (49%), Gaps = 15/497 (3%)

Query: 30  NQPSLALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLV 86
           +Q  L LL  C +     +  ++H +I+K G         +L+++     FGDL  A+ V
Sbjct: 68  SQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDL--YIAFGDLDGAVTV 125

Query: 87  FETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA- 145
           F+ +       WN ++            +  + RM+     P+  T+  +L+ C      
Sbjct: 126 FDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVP 185

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
               ++IHA  +  G E+  FV   LI++Y +NG L SA+ VF+    RD+VS+ A+++G
Sbjct: 186 FHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSG 245

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
            +  G  ++A  LF +M        P      +VLSAC  +   ++G  +  L+   G  
Sbjct: 246 LSQSGCEEEAVLLFCQM--HTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFS 303

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
              +V NAL+ +YS+ G+ + A  +F ++ +RD +S+N +I G +      +AL LF++M
Sbjct: 304 LETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKM 363

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
               ++P+ VT  S+L AC+ +GAL +GK  H+Y  K     +++ L  +L+D+Y KC +
Sbjct: 364 CLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMS-SDIILEGALLDLYVKCSD 422

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           IK A + F     + +  WN M+    +    +++  +F++M  EG++P+  T+  +L  
Sbjct: 423 IKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRT 482

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHY--GCMVDLLGRAGLFDEAEALLKTMEMKPD 503
           C+    +D+G Q    ++   K   +   Y    ++D+  + G  D A  + + ++ K D
Sbjct: 483 CSSLRAVDLGEQIHTQVL---KTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEK-D 538

Query: 504 AAIWTSLLGACRVHGRL 520
              WT+++     H + 
Sbjct: 539 VVSWTAMIAGYAQHEKF 555



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 159/618 (25%), Positives = 280/618 (45%), Gaps = 71/618 (11%)

Query: 114 AIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLIN 173
            I F   M   G   N+ T+ ++L  C      S+G ++H  +LK+G  ++  +   L++
Sbjct: 52  GINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMD 111

Query: 174 MYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
           +Y   G+L+ A  VF++  +R    +  ++  + +         LF  M   +E   P+E
Sbjct: 112 LYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRM--LQEKVKPDE 169

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEG----HGLGSNLHVTNALIDMYSKCGDLVKARD 289
            T   VL  C   G  ++       I      HG  ++L V N LID+Y K G L  A+ 
Sbjct: 170 RTYAGVLRGC---GGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKK 226

Query: 290 LFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA 349
           +F+ ++KRD +SW  M+ G + +   +EA++LF QM  S + P    F SVL AC  +  
Sbjct: 227 VFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEF 286

Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
             +G+ +H  + K    L    +  +L+ +Y++ GN   AEQVF+ M  +   S+N++IS
Sbjct: 287 YKVGEQLHGLVLKQGFSLETY-VCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLIS 345

Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS 469
           GL+  G +DKAL LF +M  + L+PD +T   +LSAC+  G L +G+Q+ +  I+   +S
Sbjct: 346 GLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKA-GMS 404

Query: 470 PKLQHYGCMVDLLGRA----------------------------GLFD---EAEALLKTM 498
             +   G ++DL  +                             GL D   E+  +   M
Sbjct: 405 SDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQM 464

Query: 499 EM---KPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE-NPGAYVLLSNMYAGAGRW 554
           +M   +P+   + S+L  C     ++LGE +   +L+   + N     +L +MYA  G+ 
Sbjct: 465 QMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKL 524

Query: 555 DDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKS 614
           D    I  RL +   K V   +++  G   HE         ++ ++++ + +     +  
Sbjct: 525 DHALKIFRRLKE---KDVVSWTAMIAGYAQHEKF------AEALNLFKEMQDQGIHSDNI 575

Query: 615 GFVPDTS-----EVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGN 669
           GF    S     + L    +   +  +S +S+ L++   L+S               CG 
Sbjct: 576 GFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYAR-----------CGK 624

Query: 670 CHSATKLISKIFNREIIA 687
              A     KIF+++ I+
Sbjct: 625 VRDAYFAFDKIFSKDNIS 642



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 4/205 (1%)

Query: 309 YTHTSDYKEA--LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK 366
           Y +++D  EA  +     M +  +  N  T+L +L  C   G    G  +H  I K    
Sbjct: 41  YAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILK-MGF 99

Query: 367 LNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSR 426
              V L   L+D+Y   G++  A  VFD M  + L+ WN ++        A + L LF R
Sbjct: 100 CAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRR 159

Query: 427 MIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAG 486
           M+ E ++PD+ T+ GVL  C    +     +  +A    +     L     ++DL  + G
Sbjct: 160 MLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNG 219

Query: 487 LFDEAEALLKTMEMKPDAAIWTSLL 511
             + A+ +   ++ K D+  W ++L
Sbjct: 220 FLNSAKKVFDGLQ-KRDSVSWVAML 243


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 256/519 (49%), Positives = 338/519 (65%), Gaps = 37/519 (7%)

Query: 224 IREENFVPNESTVVTVLSACAH-MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK-- 280
           +R   F+PN  T V V  AC + +G LE G  +       GL SNL VTNA+I MY+   
Sbjct: 23  VRVSGFLPNRYTFVFVFKACGNGLGVLE-GEQIRVHAIKIGLESNLFVTNAMIRMYANWG 81

Query: 281 -----------------------------CGDLVKARDLFESIEKRDVISWNVMIGGYTH 311
                                         G++ +A+++F+ + +RDV+SW  +I GY  
Sbjct: 82  LVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQ 141

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
              +KEAL LF +MLQ+   PN+ T  S L ACA L ALD G+WIH YIDK+  K+N   
Sbjct: 142 VGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNE-R 200

Query: 372 LWTSLIDMYAKCGNIKAAEQVF-DGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIG 429
           L  SL+DMYAKCG I  A +VF D  G K  +  WNAMI G AMHGK+ +A+ LF +M  
Sbjct: 201 LLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKV 260

Query: 430 EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489
           E + P+ +TFV +L+AC+H  L++ GR YF +M   Y I P+++HYGCMVDLLGR+GL  
Sbjct: 261 EKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLK 320

Query: 490 EAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549
           EAE  +  M M PDA IW +LLGACR+H  +E G+ + K + EL+ ++ G +VLL+N+Y+
Sbjct: 321 EAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYS 380

Query: 550 GAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDA 609
            +G+WD+   +R ++   G KK PGCSSIE+  V H+FLVGD+ HPQ+K +Y  LDE+  
Sbjct: 381 ASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTT 440

Query: 610 LLEKSGFVPDTSEVLYDM-DEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCG 668
            L+ +G+VP+  EVL D+ DEE KE ALS HSEKLAIA+GLI+T PGT IRIVKNLRVC 
Sbjct: 441 KLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVCA 500

Query: 669 NCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +CH ATK ISK++ REII RDR R+HHFKDG CSC DYW
Sbjct: 501 DCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 539



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 110/356 (30%), Positives = 183/356 (51%), Gaps = 38/356 (10%)

Query: 101 IIRGHS-LSSSPVVAIKFYVRMI-LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLK 158
           +I+ H+ + +S   +++ ++ M+ +SGF+PN YTF F+ K+C     + EG+QI  H +K
Sbjct: 1   MIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIK 60

Query: 159 LGLESDPFVHTSLINMYAQNGELESARLVFNKS--------------------------- 191
           +GLES+ FV  ++I MYA  G ++ AR VF+ S                           
Sbjct: 61  IGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEM 120

Query: 192 ----SLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
               S RD VS+T +I GY   G   +A  LF EM   +    PNE T+ + L+ACA++ 
Sbjct: 121 FDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEM--LQTGPPPNEFTLASALAACANLV 178

Query: 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLF--ESIEKRDVISWNVM 305
           +L+ G W+   I+   +  N  +  +L+DMY+KCG++  A  +F  E   K  V  WN M
Sbjct: 179 ALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAM 238

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365
           IGGY      KEA+ LF QM    + PN VTF+++L AC++   ++ G+     +  ++ 
Sbjct: 239 IGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYG 298

Query: 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHGKADKA 420
               +  +  ++D+  + G +K AE+    M     A+ W A++    +H   ++ 
Sbjct: 299 IEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERG 354



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 122/234 (52%), Gaps = 6/234 (2%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G++  A  +F+ + E + V W  II G+        A+  +  M+ +G  PN +T    L
Sbjct: 112 GEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASAL 171

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF-NKSSLRDA 196
            +CA + A+ +G+ IH ++ K  ++ +  +  SL++MYA+ GE++ A  VF ++  L+  
Sbjct: 172 AACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLK 231

Query: 197 V-SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN-W 254
           V  + A+I GYA  G   +A  LF++M +  E   PN+ T V +L+AC+H   +E G  +
Sbjct: 232 VWPWNAMIGGYAMHGKSKEAIDLFEQMKV--EKVSPNKVTFVALLNACSHGKLVEEGRGY 289

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARD-LFESIEKRDVISWNVMIG 307
             S+   +G+   +     ++D+  + G L +A + +F      D   W  ++G
Sbjct: 290 FKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLG 343



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 100/235 (42%), Gaps = 35/235 (14%)

Query: 318 ALMLFRQMLQ-SNIEPNDVTFLSVLPACAY-LGALDLGKWIHAY---------------- 359
           ++ +F  M++ S   PN  TF+ V  AC   LG L+ G+ I  +                
Sbjct: 15  SMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLE-GEQIRVHAIKIGLESNLFVTNAM 73

Query: 360 ---------IDKNHQKLN-----NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
                    +D+  +  +     ++  W  +I  Y   G I  A+++FD M  + + SW 
Sbjct: 74  IRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWT 133

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
            +I+G    G   +AL LF  M+  G  P++ T    L+AC +   LD GR + +  I  
Sbjct: 134 TIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGR-WIHVYIDK 192

Query: 466 YKISPKLQHYGCMVDLLGRAGLFD-EAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
            +I    +    ++D+  + G  D  A+       +K     W +++G   +HG+
Sbjct: 193 SEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGK 247


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 277/682 (40%), Positives = 410/682 (60%), Gaps = 18/682 (2%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEI---CAVSPFGDLSYALLVFE 88
           ALL  C    ++   + VH+Q+   GL +   A + L  +   C   P    + A  VF+
Sbjct: 21  ALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCR-RP----ADARRVFD 75

Query: 89  TIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI--LSGFVPNTYTFPFILKSCAKISAI 146
            +   ++V WN ++ G++ +  P  A++  VRM     G  P++ T   +L +CA   A+
Sbjct: 76  RMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARAL 135

Query: 147 SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGY 206
              +++HA  L+ GL+    V T++++ Y + G +E+AR VF+   +R++VS+ A+I GY
Sbjct: 136 HACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGY 195

Query: 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS 266
           A  G   +A  LF  M   +E     +++V+  L AC  +G L+    V  L+   GL S
Sbjct: 196 ADNGNATEAMALFWRMV--QEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSS 253

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESI-EKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
           N+ VTNALI  Y+KC     A  +F  +  K+  ISWN MI G+T     ++A  LF +M
Sbjct: 254 NVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARM 313

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
              N+ P+  T +SV+PA A +      +WIH Y  + HQ   +V + T+LIDMY+KCG 
Sbjct: 314 QLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIR-HQLDQDVYVLTALIDMYSKCGR 372

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           +  A ++FD    + + +WNAMI G   HG    A+ LF  M G G  P++ TF+ VL+A
Sbjct: 373 VSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAA 432

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           C+HAGL+D G++YF +M +DY + P ++HYG MVDLLGRAG  DEA + +K M ++P  +
Sbjct: 433 CSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGIS 492

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
           ++ ++LGAC++H  +EL E  A+ + EL PE    +VLL+N+YA A  W DVA +RT + 
Sbjct: 493 VYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTAME 552

Query: 566 DKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLY 625
            KG++K PG S I++ + VH F  G   H  +K IY  L ++   ++  G+VPDT  + +
Sbjct: 553 KKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAKLIEEIKDMGYVPDTDSI-H 611

Query: 626 DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREI 685
           D++++ K   L+ HSEKLAIAYGLI T PGTTI+I KNLRVC +CH+ATKLIS +  REI
Sbjct: 612 DVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLLTGREI 671

Query: 686 IARDRNRFHHFKDGNCSCNDYW 707
           I RD  RFHHFKDG CSC DYW
Sbjct: 672 IMRDIQRFHHFKDGKCSCGDYW 693



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 127/396 (32%), Positives = 194/396 (48%), Gaps = 12/396 (3%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P   TF  +LK CA  + ++ G+ +HA +   GL S+    T+L NMY +      AR V
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
           F++   RD V++ A++ GYA  G    A +    M   E    P+  T+V+VL ACA   
Sbjct: 74  FDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADAR 133

Query: 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG 307
           +L     V +     GL   ++V+ A++D Y KCG +  AR +F+ +  R+ +SWN MI 
Sbjct: 134 ALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMID 193

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
           GY    +  EA+ LF +M+Q  ++  D + L+ L AC  LG LD  + +H  + +     
Sbjct: 194 GYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLS- 252

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMG-YKTLASWNAMISGLAMHGKADKALSLFSR 426
           +NVS+  +LI  YAKC     A QVF+ +G  KT  SWNAMI G   +   + A  LF+R
Sbjct: 253 SNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFAR 312

Query: 427 MIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQH----YGCMVDLL 482
           M  E ++PD  T V V+ A     + DI        I  Y I  +L         ++D+ 
Sbjct: 313 MQLENVRPDSFTLVSVIPA-----VADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMY 367

Query: 483 GRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
            + G    A  L  +   +     W +++     HG
Sbjct: 368 SKCGRVSIARRLFDSARDR-HVITWNAMIHGYGSHG 402


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 266/612 (43%), Positives = 375/612 (61%), Gaps = 36/612 (5%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P    +  +LK C K  A+ EGKQ+HAH+   G     ++   L++MYA+ G L  A  V
Sbjct: 117 PYASIYLTLLKFCLKQRALKEGKQVHAHIKTSG-SIGLYISNRLLDMYAKCGSLVDAEKV 175

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV----------------- 230
           F++   RD  S+  +I+GY   G  + AR LFD+MP R+ NF                  
Sbjct: 176 FDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRD-NFSWTAIISGCVQHNRPEEA 234

Query: 231 --------------PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALID 276
                          N+ T+ + L+A A + SL +G  +   I   GL S+  V  +L+D
Sbjct: 235 LELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLD 294

Query: 277 MYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVT 336
           MY KCG + +AR +F+ +E+RDV+SW  MI  Y      +E   LFR ++ SNI PND T
Sbjct: 295 MYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFT 354

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDK-NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
           F  VL ACA L A DLGK IHAY+ +      ++ +  ++L+ MY+KCG+I+ A+ VF+ 
Sbjct: 355 FAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAA--SALVHMYSKCGDIENAKSVFEI 412

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
           +    L SW +++ G A HG+ DKAL  F  ++  G +PD I F+GVLSAC HAGL+D G
Sbjct: 413 LPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKG 472

Query: 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACR 515
            +YF+++ + + ++  + HY C++DLL RAG F EAE+++  M +KPD  IW +LLG CR
Sbjct: 473 LEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCR 532

Query: 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGC 575
           +HG LEL +  AK L E+EPENP  YV L+N+YA AG   + A IR  ++ +G+ K PG 
Sbjct: 533 IHGNLELAKRAAKSLFEIEPENPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGM 592

Query: 576 SSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGA 635
           S IE+   VH F VGD  HP+SK I E L E+   +++ G+VPDT+ VL+D++ E KE  
Sbjct: 593 SWIEIRREVHVFSVGDNSHPKSKEILEYLSELSKRMKEVGYVPDTNFVLHDVELEQKEEN 652

Query: 636 LSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHH 695
           LS+HSEKLA+A+G+IST  GT I++ KNLR C +CH+A K IS I  R+II RD NRFH 
Sbjct: 653 LSYHSEKLAVAFGIISTPSGTPIKVFKNLRTCVDCHNAIKFISNITGRKIIVRDSNRFHC 712

Query: 696 FKDGNCSCNDYW 707
           F+ G+CSC DYW
Sbjct: 713 FEGGSCSCKDYW 724



 Score =  185 bits (469), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 201/390 (51%), Gaps = 12/390 (3%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L + +KC ++ + ++V  +++   L +    +S  ++       G+   A  +F+ +   
Sbjct: 160 LDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVK------GGNFEKARNLFDKMPNR 213

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVP-NTYTFPFILKSCAKISAISEGKQI 152
           +   W  II G    + P  A++ Y  M    +   N  T    L + A I ++  GK+I
Sbjct: 214 DNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKI 273

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H H++++GL+SD  V  SL++MY + G +E AR +F+K   RD VS+T +I  Y   G  
Sbjct: 274 HGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRR 333

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           ++   LF  +     N +PN+ T   VL+ACA + + +LG  + + +   G  S     +
Sbjct: 334 EEGFALFRHL--MNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAAS 391

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           AL+ MYSKCGD+  A+ +FE + + D+ SW  ++ GY     + +AL  F  +L+S  +P
Sbjct: 392 ALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKP 451

Query: 333 NDVTFLSVLPACAYLGALDLG-KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           + + F+ VL ACA+ G +D G ++ H+ I + H     +  +  +ID+ A+ G    AE 
Sbjct: 452 DGIAFIGVLSACAHAGLVDKGLEYFHS-IKEKHGLTRTIDHYACIIDLLARAGQFTEAES 510

Query: 392 VFDGMGYKTLAS-WNAMISGLAMHGKADKA 420
           + + M  K     W A++ G  +HG  + A
Sbjct: 511 IINEMPIKPDKYIWAALLGGCRIHGNLELA 540



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 113/245 (46%), Gaps = 46/245 (18%)

Query: 324 QMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS--LIDMYA 381
           Q+L    +P    +L++L  C    AL  GK +HA+I  +     ++ L+ S  L+DMYA
Sbjct: 109 QLLYRIEKPYASIYLTLLKFCLKQRALKEGKQVHAHIKTS----GSIGLYISNRLLDMYA 164

Query: 382 KCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVG 441
           KCG++  AE+VFD M ++ L SWN MISG    G  +KA +LF +M       D+ ++  
Sbjct: 165 KCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNR----DNFSWTA 220

Query: 442 VLSACNHAGLLDIGRQYFNAMIQ-DYKISPKLQ--------------HYG---------- 476
           ++S C      +   + +  M + DY  S K                H G          
Sbjct: 221 IISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRM 280

Query: 477 ----------CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
                      ++D+ G+ G  +EA  +   ME + D   WT+++     +GR E G ++
Sbjct: 281 GLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEER-DVVSWTTMIHTYLKNGRREEGFAL 339

Query: 527 AKHLL 531
            +HL+
Sbjct: 340 FRHLM 344


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 276/678 (40%), Positives = 410/678 (60%), Gaps = 10/678 (1%)

Query: 34  LALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           +A L  C +   IKQ   +H+ ++K+  +   F  + LI + A   FG +  A  +F  +
Sbjct: 322 VAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYA--RFGKMGEAANIFYNM 379

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            + + + WN+++ G   +     A++FY  M  +G  P+      I+ + A+      G 
Sbjct: 380 DDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGM 439

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           QIHA+ +K GL+SD  V  SL++MYA+   ++    +F+K   +D VS+T +I G+A  G
Sbjct: 440 QIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNG 499

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
               A +LF E+ +  E    +   + ++L AC+ +  +     + S I   GL S+L +
Sbjct: 500 SHSRALELFREVQL--EGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGL-SDLVL 556

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            N ++D+Y +CG++  A  +FE IE +DV+SW  MI  Y H     EAL LF  M ++ +
Sbjct: 557 QNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGV 616

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           EP+ ++ +S+L A A L AL  GK IH ++ +    L   SL ++L+DMYA+CG ++ + 
Sbjct: 617 EPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEG-SLASTLVDMYARCGTLEKSR 675

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
            VF+ +  K L  W +MI+   MHG    A+ LF RM  E + PD I FV VL AC+H+G
Sbjct: 676 NVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSG 735

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L++ GR++  +M  +Y++ P  +HY C+VDLLGRA   +EA   +K ME++P A +W +L
Sbjct: 736 LMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCAL 795

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           LGAC++H   ELGE  A+ LLE++PENPG YVL+SN+YA   RW DV  +R R+   G+K
Sbjct: 796 LGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLK 855

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEI-DALLEKSGFVPDTSEVLYDMDE 629
           K PGCS IEVG+ VH F+  DK HPQS  IY  L +I + L ++ G+V  T  VL++  E
Sbjct: 856 KNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKE 915

Query: 630 EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
           E K   L  HSE+LAIAYG+++T  G ++RI KNLRVCG+CH+  KLISK F RE++ RD
Sbjct: 916 EEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRD 975

Query: 690 RNRFHHFKDGNCSCNDYW 707
            NRFHHFK G CSC D W
Sbjct: 976 ANRFHHFKGGVCSCGDVW 993



 Score =  215 bits (547), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 150/501 (29%), Positives = 258/501 (51%), Gaps = 11/501 (2%)

Query: 47  KQVHSQIIKT-GLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           +QVH+ +I +  L N+ F  ++L+ +      G L  A  +F+ +       WN +I  +
Sbjct: 134 QQVHAHMITSNALFNSVFLSTRLVFM--YGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAY 191

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
             +  P+ +++ Y  M +SG   +  TFP ILK+C  +     G ++H   +K G  S  
Sbjct: 192 VTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIV 251

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLR-DAVSYTALITGYASRGYLDDARQLFDEMPI 224
           FV  S++ MY +  +L  AR +F++   + D VS+ ++I+ Y+S G   +A +LF EM  
Sbjct: 252 FVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEM-- 309

Query: 225 REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
           ++ +  PN  T V  L AC     ++ G ++ + +       N+ V NALI MY++ G +
Sbjct: 310 QKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKM 369

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
            +A ++F +++  D ISWN M+ G+     Y EAL  + +M  +  +P+ V  +S++ A 
Sbjct: 370 GEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAAS 429

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
           A  G    G  IHAY  KN    +++ +  SL+DMYAK  ++K  + +FD M  K + SW
Sbjct: 430 ARSGNTLNGMQIHAYAMKNGLD-SDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSW 488

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
             +I+G A +G   +AL LF  +  EG+  D +    +L AC+   L+   ++  + +I+
Sbjct: 489 TTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIR 548

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGE 524
                  LQ+   +VD+ G  G  D A  + + +E K D   WTS++ +C VH  L    
Sbjct: 549 KGLSDLVLQN--GIVDVYGECGNVDYAARMFELIEFK-DVVSWTSMI-SCYVHNGLANEA 604

Query: 525 SVAKHLLELEPENPGAYVLLS 545
               HL++     P +  L+S
Sbjct: 605 LELFHLMKETGVEPDSISLVS 625



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 115/380 (30%), Positives = 187/380 (49%), Gaps = 7/380 (1%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKL-GLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
           +L+ C    A+SEG+Q+HAH++    L +  F+ T L+ MY + G L  A  +F+    +
Sbjct: 120 VLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHK 179

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
              ++ A+I  Y + G    + +L+ EM  R      +  T   +L AC  +     G  
Sbjct: 180 TIFTWNAMIGAYVTNGEPLGSLELYREM--RVSGIPLDACTFPCILKACGLLKDRRCGAE 237

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI-EKRDVISWNVMIGGYTHTS 313
           V  L    G  S + V N+++ MY+KC DL  AR LF+ + EK DV+SWN MI  Y+   
Sbjct: 238 VHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNG 297

Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
              EAL LF +M ++++ PN  TF++ L AC     +  G +IHA + K+   + NV + 
Sbjct: 298 QSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYI-NVFVA 356

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
            +LI MYA+ G +  A  +F  M      SWN+M+SG   +G   +AL  +  M   G +
Sbjct: 357 NALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQK 416

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
           PD +  + +++A   +G    G Q  +A      +   LQ    +VD+  +       + 
Sbjct: 417 PDLVAVISIIAASARSGNTLNGMQ-IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDC 475

Query: 494 LLKTMEMKPDAAIWTSLLGA 513
           +   M  K D   WT+++  
Sbjct: 476 IFDKMPDK-DVVSWTTIIAG 494



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 90/186 (48%), Gaps = 1/186 (0%)

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
           D  + SVL  C    AL  G+ +HA++  ++   N+V L T L+ MY KCG +  AE++F
Sbjct: 114 DEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLF 173

Query: 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLD 453
           DGM +KT+ +WNAMI     +G+   +L L+  M   G+  D  TF  +L AC       
Sbjct: 174 DGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRR 233

Query: 454 IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
            G +     I++  +S        +V +  +    + A  L   M  K D   W S++ A
Sbjct: 234 CGAEVHGLAIKEGYVSIVFVA-NSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISA 292

Query: 514 CRVHGR 519
              +G+
Sbjct: 293 YSSNGQ 298


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 273/692 (39%), Positives = 411/692 (59%), Gaps = 23/692 (3%)

Query: 10  LSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLI 69
           L P    FPP                +L  C ++ + K+VH  + K G  +  F  + L+
Sbjct: 120 LRPDFYTFPP----------------ILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLV 163

Query: 70  EICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPN 129
            +   S +G L  A  VF  +   +   WN +I G   + +   A+    RM   G   +
Sbjct: 164 HL--YSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMD 221

Query: 130 TYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN 189
           T T   IL  CA+   +  G  IH HVLK GL+SD FV  +LINMY++ G L+ A++VF+
Sbjct: 222 TITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFD 281

Query: 190 KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL 249
           +  +RD VS+ ++I  Y        A + F  M +      P+  TVV++ S  + +   
Sbjct: 282 QMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQL--GGIRPDLLTVVSLTSIFSQLSDQ 339

Query: 250 ELGNWVCS-LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGG 308
            +   +   +I    L  ++ + NAL++MY+K G +  A  +F+ + ++D ISWN ++ G
Sbjct: 340 RISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTG 399

Query: 309 YTHTSDYKEALMLFRQMLQ-SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
           YT      EA+  +  M +  +  PN  T++S++PA +++GAL  G  IHA + KN   L
Sbjct: 400 YTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYL 459

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
           + V + T LID+Y KCG ++ A  +F  +   T   WNA+I+ L +HG+ ++AL LF  M
Sbjct: 460 D-VFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDM 518

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
           + E ++ D ITFV +LSAC+H+GL+D G++ F+ M ++Y I P L+HYGCMVDLLGRAG 
Sbjct: 519 LAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGY 578

Query: 488 FDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547
            ++A  L++ M ++PDA+IW +LL AC+++G  ELG   +  LLE++ EN G YVLLSN+
Sbjct: 579 LEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNI 638

Query: 548 YAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEI 607
           YA   +W+ V  +R+   D+G++K PG SS+ VGS    F  G++ HP+   IY+ L  +
Sbjct: 639 YANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVL 698

Query: 608 DALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVC 667
            A ++  G+VPD S V  D++E+ KE  L+ HSE+LAIA+G+IST P + IRI KNLRVC
Sbjct: 699 SAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVC 758

Query: 668 GNCHSATKLISKIFNREIIARDRNRFHHFKDG 699
           G+CH+ATK IS+I  REI+ RD NRFHHFKDG
Sbjct: 759 GDCHNATKYISRISEREIVVRDSNRFHHFKDG 790



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 145/503 (28%), Positives = 257/503 (51%), Gaps = 16/503 (3%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           AL + C N+   K++H+ ++  G        +KLI +      GD+S +   F+ I + N
Sbjct: 27  ALFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTH--GDISLSRSTFDYIHKKN 84

Query: 95  QVIWNNIIRGH---SLSSSPVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGK 150
              WN+II  +         +  +     M   G + P+ YTFP ILK+C    ++ +GK
Sbjct: 85  IFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV---SLVDGK 141

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           ++H  V K+G E D FV  SL+++Y++ G L+ A  VF    ++D  S+ A+I+G+   G
Sbjct: 142 KVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNG 201

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
               A  + + M  + E    +  TV ++L  CA    +  G  +   +  HGL S++ V
Sbjct: 202 NAAGALGVLNRM--KGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFV 259

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
           +NALI+MYSK G L  A+ +F+ +E RD++SWN +I  Y   +D   AL  F+ M    I
Sbjct: 260 SNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGI 319

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
            P+ +T +S+    + L    + + I  ++ +      +V +  +L++MYAK G +  A 
Sbjct: 320 RPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAH 379

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG-EGLQPDDITFVGVLSACNHA 449
            VFD +  K   SWN +++G   +G A +A+  ++ M       P+  T+V ++ A +H 
Sbjct: 380 TVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHV 439

Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI-WT 508
           G L  G +    +I++  +   +    C++DL G+ G  ++A +L    E+  D ++ W 
Sbjct: 440 GALQQGMKIHAKLIKN-SLYLDVFVATCLIDLYGKCGRLEDAMSLF--YEIPRDTSVPWN 496

Query: 509 SLLGACRVHGRLELGESVAKHLL 531
           +++ +  +HGR E    + K +L
Sbjct: 497 AIIASLGIHGRGEEALQLFKDML 519



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 180/381 (47%), Gaps = 10/381 (2%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           F  +  SC  ++A    K++HA +L  G   +  + T LIN+Y  +G++  +R  F+   
Sbjct: 25  FNALFNSCVNVNAT---KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIH 81

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEM--PIREENFVPNESTVVTVLSACAHMGSLE 250
            ++  S+ ++I+ Y   G   +A    +++       +  P+  T   +L AC    SL 
Sbjct: 82  KKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV---SLV 138

Query: 251 LGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYT 310
            G  V   +   G   ++ V  +L+ +YS+ G L  A  +F  +  +DV SWN MI G+ 
Sbjct: 139 DGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFC 198

Query: 311 HTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNV 370
              +   AL +  +M    ++ + +T  S+LP CA    +  G  IH ++ K H   ++V
Sbjct: 199 QNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLK-HGLDSDV 257

Query: 371 SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE 430
            +  +LI+MY+K G ++ A+ VFD M  + L SWN++I+    +     AL  F  M   
Sbjct: 258 FVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLG 317

Query: 431 GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
           G++PD +T V + S  +      I R     +I+   +   +     +V++  + G  + 
Sbjct: 318 GIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNC 377

Query: 491 AEALLKTMEMKPDAAIWTSLL 511
           A  +   +  K D   W +L+
Sbjct: 378 AHTVFDQLPRK-DTISWNTLV 397


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 257/593 (43%), Positives = 384/593 (64%), Gaps = 16/593 (2%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQ---------IHAHVLKLGLESDPFVHTSLINMYAQN 178
           PN+ + P  LKS  +   IS  ++         IHA +++ G   DPF+   L+   ++ 
Sbjct: 25  PNSNSNPKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKC 84

Query: 179 GELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVT 238
             ++ A  +F  +   +   YTALI G+ S G   +A QL+  M    E+ +P+   + +
Sbjct: 85  HAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRM--LHESILPDNYLMAS 142

Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK-- 296
           +L AC    +L  G  V S     G  SN  V   ++++Y KCG+L  AR +FE + +  
Sbjct: 143 ILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDV 202

Query: 297 --RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGK 354
             +D + W  MI G+    +   AL  FR M   N+ PN+ T + VL AC+ LGAL++G+
Sbjct: 203 VAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGR 262

Query: 355 WIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMH 414
           W+H+Y+ K   +LN + +  +LI+MY++CG+I  A+ VFD M  + + ++N MISGL+M+
Sbjct: 263 WVHSYMRKFEIELN-LFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMN 321

Query: 415 GKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQH 474
           GK+ +A+ LF  M+G  L+P ++TFVGVL+AC+H GL+D G + F++M +DY++ P+++H
Sbjct: 322 GKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEH 381

Query: 475 YGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534
           YGCMVDLLGR G  +EA  L++TM+M PD  +  +LL AC++H  LELGE VAK L +  
Sbjct: 382 YGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRG 441

Query: 535 PENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVH 594
             + G YVLLS++YA +G+W + A +R ++ + GM+K PGCSSIEV + +HEFL+GD  H
Sbjct: 442 QADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRH 501

Query: 595 PQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKP 654
           PQ + IYE L+E++ LL   G+ P+   VL D+++  KE AL+ HSE+LAI YGLIST+P
Sbjct: 502 PQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLISTEP 561

Query: 655 GTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            T IR++KNLRVC +CHSA KLI+KI  R+I+ RDRNRFH+F++G CSC DYW
Sbjct: 562 CTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 614



 Score =  228 bits (582), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 138/456 (30%), Positives = 238/456 (52%), Gaps = 23/456 (5%)

Query: 1   MALPPSSLTLSPSILHFPPSSDP---------PYKLLQNQPSLALLSKCTNMQNIKQVHS 51
           M  P +S T + S+    PS  P           K L  +  ++LL +  ++  +  +H+
Sbjct: 1   MPCPYASTTFAASLPFSGPSPKPHPNSNSNPKSLKSLDQKQIISLLQRSRHINQVLPIHA 60

Query: 52  QIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSP 111
           Q+I+ G     F + +L+  C  S    + YA  +F+    PN  ++  +I G   S + 
Sbjct: 61  QLIRNGHSQDPFMVFELLRSC--SKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNY 118

Query: 112 VVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSL 171
           + AI+ Y RM+    +P+ Y    ILK+C    A+ EG+++H+  LKLG  S+  V   +
Sbjct: 119 LEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRI 178

Query: 172 INMYAQNGELESARLVFNKSS----LRDAVSYTALITGYASRGYLDDARQLFDEMPIREE 227
           + +Y + GEL  AR VF +       +D V +TA+I G+      + A + F  M  + E
Sbjct: 179 MELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGM--QGE 236

Query: 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA 287
           N  PNE T+V VLSAC+ +G+LE+G WV S +    +  NL V NALI+MYS+CG + +A
Sbjct: 237 NVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEA 296

Query: 288 RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347
           + +F+ ++ RDVI++N MI G +     ++A+ LFR M+   + P +VTF+ VL AC++ 
Sbjct: 297 QTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHG 356

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
           G +D G  I   + ++++    +  +  ++D+  + G +   E+ +D +    +   + M
Sbjct: 357 GLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRL---EEAYDLIRTMKMTPDHIM 413

Query: 408 ISGLAMHGKADKALSL---FSRMIGEGLQPDDITFV 440
           +  L    K  K L L    ++ + +  Q D  T+V
Sbjct: 414 LGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYV 449


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 269/668 (40%), Positives = 413/668 (61%), Gaps = 6/668 (0%)

Query: 42  NMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVI--WN 99
           ++++  Q+H+QII     +  F  + LI + A    G L+ ALL+F       + I  W 
Sbjct: 157 SLKHATQIHTQIIINNYTSLPFLFNNLINLYAKC--GCLNQALLLFSITHHHFKTIVTWT 214

Query: 100 NIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKL 159
           ++I   S  +  + A+  + +M  SG  PN +TF  IL + A    +  G+Q+H+ + K 
Sbjct: 215 SLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKH 274

Query: 160 GLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLF 219
           G +++ FV T+L++MYA+  ++ SA  VF++   R+ VS+ ++I G+      D A  +F
Sbjct: 275 GFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVF 334

Query: 220 DEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYS 279
            ++ +RE+  +PNE +V +VLSACA+MG L  G  V  ++  +GL    +V N+L+DMY 
Sbjct: 335 KDV-LREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYF 393

Query: 280 KCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS 339
           KC    +   LF+ +  RDV++WNV++ G+     ++EA   F  M +  I P++ +F +
Sbjct: 394 KCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFST 453

Query: 340 VLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK 399
           VL + A L AL  G  IH  I K    + N+ +  SLI MYAKCG++  A QVF+G+   
Sbjct: 454 VLHSSASLAALHQGTAIHDQIIK-LGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDH 512

Query: 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF 459
            + SW AMIS   +HG A++ + LF  M+ EG++P  +TFV VLSAC+H G ++ G  +F
Sbjct: 513 NVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHF 572

Query: 460 NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
           N+M + + ++P  +HY CMVDLLGRAG  DEA+  +++M MKP  ++W +LLGACR +G 
Sbjct: 573 NSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGN 632

Query: 520 LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIE 579
           L++G   A+ L E+EP NPG YVLL+NM   +GR ++   +R  +   G++K PGCS I+
Sbjct: 633 LKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWID 692

Query: 580 VGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHH 639
           V ++   F   D+ H  S  IY+ML++++ L++K G+V +T  V   ++E  +E  L +H
Sbjct: 693 VKNMTFVFTAHDRSHSSSDEIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQGLWYH 752

Query: 640 SEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDG 699
           SEKLA+A+GL++    + IRI KNLR CG+CH+  KL SKIF+REII RD NRFH F DG
Sbjct: 753 SEKLALAFGLLTLPIDSPIRIKKNLRTCGHCHTVMKLASKIFDREIIVRDINRFHRFADG 812

Query: 700 NCSCNDYW 707
            CSC DYW
Sbjct: 813 FCSCGDYW 820


>gi|302786876|ref|XP_002975209.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
 gi|300157368|gb|EFJ23994.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
          Length = 805

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 263/697 (37%), Positives = 412/697 (59%), Gaps = 22/697 (3%)

Query: 25  YKLLQNQPSL------ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVS 75
           +++LQ   +L      ++LS C++ + +   + +H   ++ GL   +   S L+ +    
Sbjct: 117 HRILQEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSM--YG 174

Query: 76  PFGDLSYALLVFETI-REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFP 134
             G L  A  +F  + R  + V+WN +I  +S + SP  A++ + RM+  G  P+  TF 
Sbjct: 175 RCGSLRDANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFV 234

Query: 135 FILKSCAKISAI--SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
            + K+C+   ++  S+ K  H  + + GL SD  V T+L+N YA+ GE++ AR  F    
Sbjct: 235 SVFKACSSSPSLRASQVKGFHTCLDETGLGSDVVVATALVNAYARCGEIDCAREFFAAMP 294

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
            R+AVS+T++I  +A  G+L  A + F  M +  E  VP  ST+   L  C  + +  L 
Sbjct: 295 ERNAVSWTSMIAAFAQIGHLL-AVETFHAMLL--EGVVPTRSTLFAALEGCEDLHTARLV 351

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR--DVISWNVMIGGYT 310
             +   I   G+ +++ +   L+  Y++C     A  +F + E+   D      MI  Y 
Sbjct: 352 EAIAQEI---GVATDVAIVTDLVMAYARCDGQEDAIRVFSAREEGEWDAALVTAMIAVYA 408

Query: 311 HTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNV 370
              D +    L+   ++  I P+ + +++ L ACA L AL  G+ IHA +  + +   +V
Sbjct: 409 QCRDRRSTFKLWGAAIERGISPDRILYITALDACASLAALSEGRQIHACVAADRRLDRDV 468

Query: 371 SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE 430
           +L  +++ MY +CG+++ A   FDGM  +   SWNAM+S  A HG+ +    LF  M+ E
Sbjct: 469 TLGNAIVSMYGQCGSLRDARDAFDGMPARDEISWNAMLSASAQHGRVEDCCDLFRAMLQE 528

Query: 431 GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
           G   + + F+ +LSAC HAGL++ G ++F+AM  D+ + P  +HYGCMVDLLGR G   +
Sbjct: 529 GFDAERVAFLNLLSACAHAGLVEAGCEHFSAMTGDHGVVPATEHYGCMVDLLGRKGRLAD 588

Query: 491 AEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAG 550
           A  +++ M + PDAA W +L+GACR++G  E G   A+ +LEL   +  AYV L N+Y+ 
Sbjct: 589 AHGIVQAMPVPPDAATWMALMGACRIYGDTERGRFAAERVLELRANHTAAYVALCNIYSA 648

Query: 551 AGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDAL 610
           AGRW+D A +R  + D G++K+PG SSIE+ S VHEF+V D+ HPQS+ IY  L+ +   
Sbjct: 649 AGRWEDAAAVRKIMADLGLRKIPGVSSIEIRSKVHEFVVRDRSHPQSEAIYAELERVMGA 708

Query: 611 LEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNC 670
           +E++G+   T EVL+D++EE KE  L  HSEKLAIA+G++ST  G+T+R++KNLRVC +C
Sbjct: 709 IERAGYRAVTGEVLHDVEEEQKEQLLRFHSEKLAIAFGMMSTPQGSTLRVIKNLRVCVDC 768

Query: 671 HSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           H+A+K ISK+F REI+ RD  RFHHFKDG CSC DYW
Sbjct: 769 HNASKFISKVFGREIVVRDVRRFHHFKDGACSCGDYW 805



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 199/451 (44%), Gaps = 17/451 (3%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G L  A+ VF  I   + V+W  +I  +        AI  + R++  G   +   F  +L
Sbjct: 76  GSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVSVL 135

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-DA 196
            +C+    ++ G+ IH   ++ GL     V ++L++MY + G L  A  +F       D 
Sbjct: 136 SACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANALFGHLERHLDV 195

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL----G 252
           V + A+IT  +  G   +A ++F  M   +    P+  T V+V  AC+   SL      G
Sbjct: 196 VLWNAMITANSQNGSPREALEIFYRML--QLGIPPDLVTFVSVFKACSSSPSLRASQVKG 253

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
              C  ++  GLGS++ V  AL++ Y++CG++  AR+ F ++ +R+ +SW  MI  +   
Sbjct: 254 FHTC--LDETGLGSDVVVATALVNAYARCGEIDCAREFFAAMPERNAVSWTSMIAAFAQI 311

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
             +  A+  F  ML   + P   T  + L  C  L    L + I   I        +V++
Sbjct: 312 G-HLLAVETFHAMLLEGVVPTRSTLFAALEGCEDLHTARLVEAIAQEIGVA----TDVAI 366

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGM--GYKTLASWNAMISGLAMHGKADKALSLFSRMIGE 430
            T L+  YA+C   + A +VF     G    A   AMI+  A          L+   I  
Sbjct: 367 VTDLVMAYARCDGQEDAIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIER 426

Query: 431 GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
           G+ PD I ++  L AC     L  GRQ    +  D ++   +     +V + G+ G   +
Sbjct: 427 GISPDRILYITALDACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRD 486

Query: 491 AEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
           A      M  + D   W ++L A   HGR+E
Sbjct: 487 ARDAFDGMPAR-DEISWNAMLSASAQHGRVE 516



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 144/295 (48%), Gaps = 10/295 (3%)

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
           ++ ++L+ MY +CG L  A D+F  I  + ++ W V+I  Y        A+ LF ++LQ 
Sbjct: 63  YLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQE 122

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            I  + + F+SVL AC+    L  G+ IH    +    L  + + ++L+ MY +CG+++ 
Sbjct: 123 GIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEI-VASALVSMYGRCGSLRD 181

Query: 389 AEQVFDGM-GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
           A  +F  +  +  +  WNAMI+  + +G   +AL +F RM+  G+ PD +TFV V  AC+
Sbjct: 182 ANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACS 241

Query: 448 HAGLLDIGR-QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
            +  L   + + F+  + +  +   +     +V+   R G  D A      M  + +A  
Sbjct: 242 SSPSLRASQVKGFHTCLDETGLGSDVVVATALVNAYARCGEIDCAREFFAAMPER-NAVS 300

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIR 561
           WTS++ A    G L   E+    LLE      G     S ++A     +D+ T R
Sbjct: 301 WTSMIAAFAQIGHLLAVETFHAMLLE------GVVPTRSTLFAALEGCEDLHTAR 349



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 83/163 (50%), Gaps = 5/163 (3%)

Query: 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLA 412
           GK +H+ I  +     +  L +SL+ MY +CG++++A  VF  + +K++  W  +IS   
Sbjct: 45  GKLLHSKISSSQSLSRDGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYV 104

Query: 413 MHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL 472
             G +  A++LF R++ EG+  D I FV VLSAC+    L  GR      ++       L
Sbjct: 105 SRGHSAAAIALFHRILQEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVE---AGLGL 161

Query: 473 QHY--GCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
           Q      +V + GR G   +A AL   +E   D  +W +++ A
Sbjct: 162 QEIVASALVSMYGRCGSLRDANALFGHLERHLDVVLWNAMITA 204


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 257/661 (38%), Positives = 395/661 (59%), Gaps = 6/661 (0%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K++H  ++K+G     FA++ L  + A      +  A  VF+ + E + V WN I+ G+S
Sbjct: 155 KEIHGLLVKSGFSLDLFAMTGLENMYAKCR--QVHEARKVFDRMPERDLVSWNTIVAGYS 212

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +    +A++    M      P+  T   +L + + +  I  GK+IH + ++ G +S   
Sbjct: 213 QNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVN 272

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           + T+L++MYA+ G L++ARL+F+    R+ VS+ ++I  Y       +A  +F +M   +
Sbjct: 273 IATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKM--LD 330

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           E   P + +V+  L ACA +G LE G ++  L     L  N+ V N+LI MY KC ++  
Sbjct: 331 EGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDT 390

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A  +F  ++ R ++SWN MI G+       EAL  F QM    ++P+  T++SV+ A A 
Sbjct: 391 AASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAE 450

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
           L      KWIH  + +N     NV + T+L+DMYAKCG I  A  +FD M  + + +WNA
Sbjct: 451 LSITHHAKWIHGVVMRNCLD-KNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNA 509

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
           MI G   HG    AL LF  M    ++P+ +TF+ V+SAC+H+GL++ G + F+ M ++Y
Sbjct: 510 MIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENY 569

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
            I P + HYG MVDLLGRAG  +EA   +  M +KP   ++ ++LGAC++H  +   E V
Sbjct: 570 SIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKV 629

Query: 527 AKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHE 586
           A+ L EL PE+ G +VLL+N+Y  A  W+ V  +R  +  +G++K PGCS +E+ + VH 
Sbjct: 630 AERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHS 689

Query: 587 FLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIA 646
           F  G   HP SK IY  L+++   ++++G+VPDT+ +L  ++++ KE  LS HSEKLAI+
Sbjct: 690 FFSGSTAHPSSKKIYAFLEKLICQIKEAGYVPDTNLIL-GLEDDVKEQLLSSHSEKLAIS 748

Query: 647 YGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDY 706
           +GL++T  GTTI + KNLRVC +CH+ATK IS +  REII RD  RFHHFK+G CSC DY
Sbjct: 749 FGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIIVRDMQRFHHFKNGACSCGDY 808

Query: 707 W 707
           W
Sbjct: 809 W 809



 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 181/600 (30%), Positives = 301/600 (50%), Gaps = 64/600 (10%)

Query: 3   LPPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQ 62
           +PP    +S S  HF    +     +   P+  LL +C++++ ++ +   I K GL+   
Sbjct: 14  IPP----ISSSHRHFLSQRNYIPANVYEHPAALLLERCSSLKELRHILPLIFKNGLYQEH 69

Query: 63  FALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI 122
              +KL+ +     +G +  A  VFE I +   V++  +++G +  S    A+KF+VRM 
Sbjct: 70  LFQTKLVSL--FCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMR 127

Query: 123 LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELE 182
                P  Y F ++LK C   + +  GK+IH  ++K G   D F  T L NMYA+  ++ 
Sbjct: 128 DDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVH 187

Query: 183 SARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSA 242
            AR VF++   RD VS+  ++ GY+  G    A ++ + M   EEN  P+  T+V+VL A
Sbjct: 188 EARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMC--EENLKPSFITIVSVLPA 245

Query: 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
            + +  + +G  +       G  S +++  AL+DMY+KCG L  AR LF+ + +R+V+SW
Sbjct: 246 VSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSW 305

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
           N MI  Y    + KEA+++F++ML   ++P DV+ +  L ACA LG L+ G++IH  +  
Sbjct: 306 NSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHK-LSV 364

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALS 422
             +   NVS+  SLI MY KC  +  A  +F  +  +T+ SWNAMI G A +G+  +AL+
Sbjct: 365 ELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALN 424

Query: 423 LFSRMIGEGLQPDDITFVGVLSA------CNHA--------------------------- 449
            FS+M    ++PD  T+V V++A       +HA                           
Sbjct: 425 YFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYA 484

Query: 450 --GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME---MKPDA 504
             G + I R  F+ M + +  +     +  M+D  G  G+   A  L + M+   ++P+ 
Sbjct: 485 KCGAIMIARLIFDMMSERHVTT-----WNAMIDGYGTHGIGKAALELFEEMQKGTIRPNG 539

Query: 505 AIWTSLLGACRVHGRLELGESVAKHLLE---LEP--ENPGAYVLLSNMYAGAGR----WD 555
             + S++ AC   G +E G      + E   +EP  ++ GA V   ++   AGR    WD
Sbjct: 540 VTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMV---DLLGRAGRLNEAWD 596


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 250/574 (43%), Positives = 369/574 (64%), Gaps = 5/574 (0%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           +L  C   +AI EG+++HAH++K   E   ++ T LI +Y +   L  AR V ++   R+
Sbjct: 16  VLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERN 75

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
            VS+TA+I+GY+ RGY  +A  LF EM +      PNE T  TVL++C      +LG  +
Sbjct: 76  VVSWTAMISGYSQRGYASEALHLFVEMLM--SGTAPNEFTFATVLTSCTSSSGFQLGRQI 133

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
            SL+      S++ V ++L+DMY+K G + +AR +F+ + +RDV+S   +I GY      
Sbjct: 134 HSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLD 193

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
           +EAL LFR++ +  +  N VT+ SVL A + L ALD G+ +H+++ +       V L  S
Sbjct: 194 EEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFY-VVLQNS 252

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG-LQP 434
           LIDMY+KCG++  + ++FD M  +T+ SWNAM+ G + HG   +A+ LF  M  E  ++P
Sbjct: 253 LIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKP 312

Query: 435 DDITFVGVLSACNHAGLLDIGRQYFNAMI-QDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
           D +TF+ VLS C+H G+ D G + F  M+ Q     P+++HYGC+VDL GRAG  +EA  
Sbjct: 313 DSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFE 372

Query: 494 LLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGR 553
            +K M  +P AAIW SLLGACRVH  + +GE VA+ LLE+E EN G YV+LSN+YA AGR
Sbjct: 373 FIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGR 432

Query: 554 WDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEK 613
           WDDV T+R  + +K + K PG S IE+   +H F   D+ HP+ + ++  + E+   +++
Sbjct: 433 WDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKE 492

Query: 614 SGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSA 673
           +G+VP+ S VLYD+D+E KE  L  HSEKLA+A+GLI T  GT +RI+KNLR+C +CH+ 
Sbjct: 493 AGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNF 552

Query: 674 TKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            K +S+++ RE+  RD+NRFHH   G CSC DYW
Sbjct: 553 AKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 586



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 128/387 (33%), Positives = 214/387 (55%), Gaps = 12/387 (3%)

Query: 35  ALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEIC-AVSPFGDLSYALLVFETI 90
           ++L++C +   I++   VH+ +IKT      +  ++LI +       GD   A  V + +
Sbjct: 15  SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGD---ARRVLDEM 71

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            E N V W  +I G+S       A+  +V M++SG  PN +TF  +L SC   S    G+
Sbjct: 72  PERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGR 131

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           QIH+ V+K   ES  FV +SL++MYA+ G++  AR VF+    RD VS TA+I+GYA  G
Sbjct: 132 QIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLG 191

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
             ++A  LF  +  + E    N  T  +VL+A + + +L+ G  V S +    L   + +
Sbjct: 192 LDEEALDLFRRL--QREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVL 249

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN- 329
            N+LIDMYSKCG L  +R +F+S+ +R VISWN M+ GY+     +EA+ LF+ M + N 
Sbjct: 250 QNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENK 309

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWI-HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
           ++P+ VTFL+VL  C++ G  D G  I +  +++       +  +  ++D++ + G ++ 
Sbjct: 310 VKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEE 369

Query: 389 AEQVFDGMGYK-TLASWNAMISGLAMH 414
           A +    M ++ T A W +++    +H
Sbjct: 370 AFEFIKKMPFEPTAAIWGSLLGACRVH 396


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 236/435 (54%), Positives = 316/435 (72%), Gaps = 1/435 (0%)

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           A+I  Y+K G + +AR LF+ +E+RD I WNVMI GY       E L+LFRQML + + P
Sbjct: 11  AMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRP 70

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N+VT L+VL AC   GAL+ G+W+H+YI+ N   +N V + TSLIDMY+KCG+++ A  V
Sbjct: 71  NEVTVLAVLSACGQTGALETGRWVHSYIENNGIGIN-VRVGTSLIDMYSKCGSLEDARLV 129

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F+ +  K + +WN+M+ G AMHG +  AL LF  M   G QP DITF+GVL+AC+HAGL+
Sbjct: 130 FERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLV 189

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
             G ++F +M  +Y I PK++HYGCMV+LLGRAG  +EA  L+K ME+  D  +W +LLG
Sbjct: 190 SEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLG 249

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           ACR+HG + LGE +A++L+     N G YVLLSN+YA AG W+ VA +RT + + G +K 
Sbjct: 250 ACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGFEKE 309

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
           PGCSSIEV + VHEFL GD  HP+S+ IYEML+EI+  L+  G+ P T  VL+D+++  K
Sbjct: 310 PGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLHDLEDAQK 369

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
           E +L  HSEKLA+A+GLI+TKPGTTI+IVKNLRVC +CH+ TKLISKI  R+++ RDRNR
Sbjct: 370 ERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGRKVVMRDRNR 429

Query: 693 FHHFKDGNCSCNDYW 707
           FHHF +G CSC DYW
Sbjct: 430 FHHFVNGLCSCGDYW 444



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/249 (35%), Positives = 140/249 (56%), Gaps = 5/249 (2%)

Query: 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
           T++I  YA+ G ++ AR++F+    RDA+ +  +I GYA  G  ++   LF +M      
Sbjct: 10  TAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQML--NAK 67

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288
             PNE TV+ VLSAC   G+LE G WV S IE +G+G N+ V  +LIDMYSKCG L  AR
Sbjct: 68  VRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDAR 127

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
            +FE I  +DV++WN M+ GY      ++AL LF++M     +P D+TF+ VL AC++ G
Sbjct: 128 LVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAG 187

Query: 349 ALDLGKWIHAYIDKNHQKLN-NVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-KTLASWNA 406
            +  G W   Y  K+   +   V  +  ++++  + G ++ A ++   M   +    W  
Sbjct: 188 LVSEG-WKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGT 246

Query: 407 MISGLAMHG 415
           ++    +HG
Sbjct: 247 LLGACRLHG 255



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 158/324 (48%), Gaps = 41/324 (12%)

Query: 71  ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNT 130
           I   + +G +  A ++F+ + E + + WN +I G++    P   +  + +M+ +   PN 
Sbjct: 13  ITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRPNE 72

Query: 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK 190
            T   +L +C +  A+  G+ +H+++   G+  +  V TSLI+MY++ G LE ARLVF +
Sbjct: 73  VTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFER 132

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250
            S +D V++ +++ GYA  G+  DA +LF EM +    + P + T + VL+AC+H G + 
Sbjct: 133 ISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMI--GYQPTDITFIGVLNACSHAGLVS 190

Query: 251 LG-NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGG 308
            G  +  S+ + +G+   +     ++++  + G L +A +L +++E  +D + W  ++G 
Sbjct: 191 EGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLG- 249

Query: 309 YTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN 368
                                             AC   G + LG+ I  Y+    Q L 
Sbjct: 250 ----------------------------------ACRLHGNIALGEQIAEYLVS--QNLA 273

Query: 369 NVSLWTSLIDMYAKCGNIKAAEQV 392
           N   +  L ++YA  GN +   +V
Sbjct: 274 NSGTYVLLSNIYAAAGNWEGVARV 297



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 80/145 (55%), Gaps = 2/145 (1%)

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
           T++I  YAK G I  A  +FDG+  +    WN MI G A HG  ++ L LF +M+   ++
Sbjct: 10  TAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVR 69

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
           P+++T + VLSAC   G L+ GR + ++ I++  I   ++    ++D+  + G  ++A  
Sbjct: 70  PNEVTVLAVLSACGQTGALETGR-WVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARL 128

Query: 494 LLKTMEMKPDAAIWTSLLGACRVHG 518
           + + +  K D   W S++    +HG
Sbjct: 129 VFERISNK-DVVAWNSMVVGYAMHG 152


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 274/709 (38%), Positives = 400/709 (56%), Gaps = 67/709 (9%)

Query: 63  FALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI 122
           F  + L+ + A S  G L+ A +VF  + E + V W  ++ G + +     A+K ++ M+
Sbjct: 98  FTWNSLLSMYAKS--GRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMV 155

Query: 123 LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELE 182
             G  P+ +    +L SCA   A   G+++H+ V+KLGL S   V  S++ MY + G+ E
Sbjct: 156 GEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAE 215

Query: 183 SARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE---------------- 226
           +AR VF +  +R   S+ A+++ Y  +G +D A  +F+ M  R                 
Sbjct: 216 TARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGL 275

Query: 227 --------------ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
                          +  P+E TV +VLSACA++  L++G  + S I   G+  +  + N
Sbjct: 276 DDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMN 335

Query: 273 ALIDMYSKCG---------------------------------DLVKARDLFESIEKRDV 299
           ALI  Y+K G                                 D  +AR++F+ +  RDV
Sbjct: 336 ALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDV 395

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
           I+W  MI GY       EA+ LFR M++S  EPN  T  +VL ACA L  L  GK IH  
Sbjct: 396 IAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCR 455

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-KTLASWNAMISGLAMHGKAD 418
             ++ Q+  +VS+  ++I +YA+ G++  A +VFD + + K   +W +MI  LA HG  +
Sbjct: 456 AIRSLQE-QSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGE 514

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478
           +A+ LF  M+  G++PD +T++GV SAC HAG +D G++Y+  M+ ++ I P++ HY CM
Sbjct: 515 QAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACM 574

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
           VDLL RAGL  EA   ++ M + PD  +W SLL ACRV    +L E  A+ LL ++P+N 
Sbjct: 575 VDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNS 634

Query: 539 GAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSK 598
           GAY  L+N+Y+  GRW+D A I     DK +KK  G S   V S VH F   D +HPQ  
Sbjct: 635 GAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQRD 694

Query: 599 HIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTI 658
            I +   E+   ++K+GFVPD + VL+D+D+E KE  LS HSEKLAIA+GLIST   TT+
Sbjct: 695 AICKKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTL 754

Query: 659 RIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           RI+KNLRVC +CH+A K ISK+ +REII RD  RFHHF+DG CSC DYW
Sbjct: 755 RIMKNLRVCNDCHTAIKFISKVVDREIIVRDATRFHHFRDGYCSCKDYW 803



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 111/466 (23%), Positives = 198/466 (42%), Gaps = 113/466 (24%)

Query: 147 SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGY 206
           S G+ IHAH +K GL    ++  +L++ YA+ G                           
Sbjct: 42  SAGRAIHAHAVKAGLLVSAYLCNNLLSYYARAG--------------------------- 74

Query: 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS 266
             RG   +AR+LFD++P    N                         W            
Sbjct: 75  VGRGCFHEARRLFDDIPYARRNAF----------------------TW------------ 100

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML 326
                N+L+ MY+K G L  AR +F  + +RD +SW VM+ G      + +A+  F  M+
Sbjct: 101 -----NSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMV 155

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
              + P+     +VL +CA   A  +G+ +H+++ K     + V +  S++ MY KCG+ 
Sbjct: 156 GEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLS-SCVPVANSVLYMYGKCGDA 214

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
           + A  VF+ M  ++ +SWNAM+S     G+ D ALS+F  M    +    +++  +++  
Sbjct: 215 ETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSI----VSWNAIIAGY 270

Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
           N  GL D+  ++F+ M                                L    M+PD   
Sbjct: 271 NQNGLDDMALKFFSRM--------------------------------LTASSMEPDEFT 298

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELE-PENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
            TS+L AC     L++G+ +  ++L    P +      L + YA +G    V T R R+ 
Sbjct: 299 VTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSG---SVETAR-RIM 354

Query: 566 DKGMKKVPGCSSIEVGSVVHEFL-VGDKVHPQSKHIYEMLDEIDAL 610
           DK +  V   + I   +++  ++ +GD    Q++ ++++++  D +
Sbjct: 355 DKAV--VADLNVISFTALLEGYVKLGDT--KQAREVFDVMNNRDVI 396



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 102/458 (22%), Positives = 190/458 (41%), Gaps = 100/458 (21%)

Query: 35  ALLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVS---------------- 75
           ++LS C N++ +K   Q+HS I++TG+  +   ++ LI   A S                
Sbjct: 301 SVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVA 360

Query: 76  ---------------PFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVR 120
                            GD   A  VF+ +   + + W  +I G+  +     A++ +  
Sbjct: 361 DLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRS 420

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           MI SG  PN++T   +L +CA ++ +  GKQIH   ++   E    V  ++I +YA++G 
Sbjct: 421 MIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGS 480

Query: 181 LESARLVFNKSSLR-DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTV 239
           +  AR VF++   R + V++T++I   A  G  + A  LF+EM        P+  T + V
Sbjct: 481 VPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEML--RVGVKPDRVTYIGV 538

Query: 240 LSACAHMGSLELG-NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD 298
            SAC H G ++ G  +   ++  HG+   +     ++D+ ++ G L +A +  + +    
Sbjct: 539 FSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMP--- 595

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
                                          + P+ V + S+L AC      DL      
Sbjct: 596 -------------------------------VAPDTVVWGSLLAACRVRKNADLA----- 619

Query: 359 YIDKNHQKL-----NNVSLWTSLIDMYAKCGNIKAAEQVF-----DGMGYKTLASWNAMI 408
             +   +KL     +N   +++L ++Y+ CG    A +++       +  +T  SW  + 
Sbjct: 620 --ELAAEKLLSIDPDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQ 677

Query: 409 SGLAMHGKAD-----------KALSLFSRMIGEGLQPD 435
           S + + G  D           KA  ++  +   G  PD
Sbjct: 678 SKVHVFGADDVLHPQRDAICKKAAEMWEEIKKAGFVPD 715


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 282/735 (38%), Positives = 421/735 (57%), Gaps = 72/735 (9%)

Query: 42  NMQNIKQVHSQIIKTG--LHNTQFA--LSKLIEICAVSPFGDLSYALLVFETIREP-NQV 96
           +++   ++H+ +  +G  LH    A  L+ L    + S    L YAL +F+  R P +  
Sbjct: 11  SVRQATELHALVTTSGRLLHPPSAAHLLNSLTSCISPSDPLHLRYALSLFD--RMPCSTF 68

Query: 97  IWNNIIRG-HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA-ISEGKQIHA 154
           +++  +R     SS P   I  Y RM      P+ +TF F+ K CA+  A +  G+ +HA
Sbjct: 69  LFDTALRACFRASSGPDRPIILYRRMHGVDVPPDAFTFHFLFKCCARGGAHVLLGRMLHA 128

Query: 155 HVLKLGLESD-PFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
              +  L S  P + + +I+MYA+ G    AR  F+++S++D V++T +I+G A  G LD
Sbjct: 129 ACFRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMGLLD 188

Query: 214 DARQLFDEMPIR-----------------------------EENFVPNESTVVTVLSACA 244
           DAR+L    P+R                              +   P+E TV+ +LSAC 
Sbjct: 189 DARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACG 248

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARD--------------- 289
            +  L  G  +  L+    +  +  +  ALIDMY+KCGD  +AR+               
Sbjct: 249 QLKDLNFGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGPQPWN 308

Query: 290 -----------------LFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
                            LF+ +E  DVI++N +I GY H    +EAL+LF +M +  +  
Sbjct: 309 AMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGA 368

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           ++ T + +L A A LGAL  G+ +HA I++   +  +V L T+L+DMY KCG ++ A   
Sbjct: 369 DNFTMVGLLTASASLGALPQGRALHACIEQRLVE-RDVYLGTALLDMYMKCGRVEEAMVA 427

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F  M  + + +W+AMI GLA +G    AL  F  M  +G   + +T++ VL+AC+H+ LL
Sbjct: 428 FKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDGFHANSVTYIAVLTACSHSCLL 487

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           D GR YF+ M   + I P+++HYGCM+DLLGR+GL DEA  L++TM M+P+A IW S+L 
Sbjct: 488 DEGRLYFDEMRLLHNIRPQIEHYGCMIDLLGRSGLLDEAMDLVQTMPMQPNAVIWASILS 547

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           ACRVH  ++L ++ A HLL+LEP     YV + N+Y  + +W+D + IR  +  +G+KK 
Sbjct: 548 ACRVHKNVDLAQNAAHHLLKLEPAEDAVYVQMYNIYIDSRQWEDASKIRRLMEKRGVKKT 607

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
            G SSI V   VH+F+VGD+ HPQ   I  M++EI   L+ +G+ P TS++  D+DEE K
Sbjct: 608 AGYSSIAVAGQVHKFIVGDRSHPQIAEIVVMMEEIGRRLKSAGYSPITSQITVDVDEEEK 667

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
           E AL  HSEKLAIA+GL+S  P   + I+KNLRVC +CHSA KLIS+++NREII RDR+R
Sbjct: 668 EQALLAHSEKLAIAFGLVSLAPNLPVHIIKNLRVCEDCHSAIKLISRLWNREIIVRDRSR 727

Query: 693 FHHFKDGNCSCNDYW 707
           FHHF+ G CSCND+W
Sbjct: 728 FHHFRGGVCSCNDFW 742


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 255/575 (44%), Positives = 371/575 (64%), Gaps = 4/575 (0%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           +  +L+SC    AI  GKQ+HA + ++G+  +P + T L+N+Y     L +A L+F++ S
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
            R+   +  +I GYA  G  + A  L+ +M  R+   VP++ T   VL AC+ + ++E G
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQM--RDYGLVPDKFTFPFVLKACSALSAMEEG 121

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
             +   +   GL S++ V  ALIDMY+KCG +  AR +F+ I++RDV+ WN M+  Y+  
Sbjct: 122 KKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQN 181

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
               E+L L R M  + ++P + TF+  + A A  G L  GK +H Y    H   +N  +
Sbjct: 182 GQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGY-SWRHGFESNDKV 240

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
            T+L+DMYAK G++  A  +F+ +  K + SWNAMI+G AMHG A++AL LF  M G+ L
Sbjct: 241 KTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGKVL 300

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
            PD ITFVGVL+AC+H GLL+ G+ +F +MI D+ I P +QHY CM+DLLG  G  +EA 
Sbjct: 301 -PDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAY 359

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552
            L+  M ++PDA +W +LL +C++HG +E+GE   + L+ELEP++ G YV+LSNMYA AG
Sbjct: 360 KLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAG 419

Query: 553 RWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE 612
           +WD VA +R  + +KG+KK   CS IEVG+ VH FL  D  HP+S+ IY  L     L++
Sbjct: 420 KWDGVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMK 479

Query: 613 KSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHS 672
           ++G+ P    V +D++++ K   +S HSE+LAIA+GLIST  GT + I+KNLR+C +CH 
Sbjct: 480 EAGYAPQVGSVFHDVEDDEKVDMVSCHSERLAIAFGLISTSAGTKLLIIKNLRICEDCHV 539

Query: 673 ATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           A K ISKI  REI  RD NR+HHFKDG CSC D+W
Sbjct: 540 AIKFISKITEREITIRDVNRYHHFKDGVCSCGDFW 574



 Score =  234 bits (596), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 141/406 (34%), Positives = 223/406 (54%), Gaps = 11/406 (2%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           +LL  C   + I   KQ+H++I + G+       +KL+ +  +     L+ A L+F+ I 
Sbjct: 6   SLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCIC--NSLTNAHLLFDRIS 63

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           + N  +WN +IRG++ +    +AI  Y +M   G VP+ +TFPF+LK+C+ +SA+ EGK+
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IH  V++ GLESD FV  +LI+MYA+ G +ESAR VF+K   RD V + +++  Y+  G 
Sbjct: 124 IHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQ 183

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
            D++  L   M        P E T V  ++A A  G L  G  +      HG  SN  V 
Sbjct: 184 PDESLALCRVMAF--NGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVK 241

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
            AL+DMY+K G +  AR LFE +E++ V+SWN MI GY       EAL LF++M +  + 
Sbjct: 242 TALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEM-KGKVL 300

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+ +TF+ VL AC++ G L+ GK     +  +      V  +T +ID+   CG ++ A +
Sbjct: 301 PDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYK 360

Query: 392 VFDGMGYKTLAS-WNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           +   M  +  A  W A++    +HG  +       +++   L+PDD
Sbjct: 361 LIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLV--ELEPDD 404



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 159/286 (55%), Gaps = 5/286 (1%)

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
           S   ++L +C    ++E G  + + I   G+  N  +   L+++Y  C  L  A  LF+ 
Sbjct: 2   SYYASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDR 61

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
           I KR++  WNVMI GY     Y+ A+ L+ QM    + P+  TF  VL AC+ L A++ G
Sbjct: 62  ISKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEG 121

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAM 413
           K IH  + ++  + ++V +  +LIDMYAKCG +++A QVFD +  + +  WN+M++  + 
Sbjct: 122 KKIHKDVIRSGLE-SDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQ 180

Query: 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFN-AMIQDYKISPKL 472
           +G+ D++L+L   M   GL+P + TFV  ++A    GLL  G++    +    ++ + K+
Sbjct: 181 NGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKV 240

Query: 473 QHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           +    ++D+  ++G  + A +L + +E K   + W +++    +HG
Sbjct: 241 K--TALMDMYAKSGSVNVARSLFELLEEKRVVS-WNAMITGYAMHG 283



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 152/303 (50%), Gaps = 9/303 (2%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L   S  + M+  K++H  +I++GL +  F  + LI++ A    G +  A  VF+ I E 
Sbjct: 109 LKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYA--KCGCVESARQVFDKIDER 166

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           + V WN+++  +S +  P  ++     M  +G  P   TF   + + A    + +GK++H
Sbjct: 167 DVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELH 226

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
            +  + G ES+  V T+L++MYA++G +  AR +F     +  VS+ A+ITGYA  G+ +
Sbjct: 227 GYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHAN 286

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW-VCSLIEGHGLGSNLHVTN 272
           +A  LF EM   +   +P+  T V VL+AC+H G L  G     S+I    +   +    
Sbjct: 287 EALDLFKEM---KGKVLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYT 343

Query: 273 ALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
            +ID+   CG L +A  L   +  + D   W  ++       + +   +   ++++  +E
Sbjct: 344 CMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVE--LE 401

Query: 332 PND 334
           P+D
Sbjct: 402 PDD 404


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 255/569 (44%), Positives = 364/569 (63%), Gaps = 12/569 (2%)

Query: 132 TFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKS 191
           T+PF++K+C + S    G  +H HV+K G E D ++  SLI++YA   +L +A+ +F+  
Sbjct: 2   TYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLC 61

Query: 192 SLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL 251
           S RD VS+ A+I GY  RG +   R +FD M  R+        +  T+++  A +G ++ 
Sbjct: 62  SDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDV------ISWNTIINGYAIVGKIDE 115

Query: 252 GNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311
              +   +       NL   N+++  + KCG++ +A  LF  +  RDV+SWN M+  Y  
Sbjct: 116 AKRLFDEMPER----NLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQ 171

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
                EAL LF QM    ++P + T +S+L ACA+LGALD G  +H YI+ N  ++N++ 
Sbjct: 172 CGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSI- 230

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
           + T+L+DMYAKCG I  A QVF+ M  K + +WN +I+G+A+HG   +A  LF  M    
Sbjct: 231 VGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEAS 290

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
           ++P+DITFV +LSAC+HAG++D G++  + M   Y I PK++HY C++DLL RAGL +EA
Sbjct: 291 VEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEA 350

Query: 492 EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA 551
             L+ TM M+P+ +   +LLG CR+HG  ELGE V K L+ L+P + G Y+LLSN+YA A
Sbjct: 351 MELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAA 410

Query: 552 GRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALL 611
            +WDD   +R  +   G+ KVPG S IE+  +VH F+ GD  HP+S  IY+ L+EI   L
Sbjct: 411 KKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNEIHTRL 470

Query: 612 EKS-GFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNC 670
           + + G+  DT  VL DM+EE KE AL+ HSEKLAIAYGL+       IRIVKNLRVC +C
Sbjct: 471 KSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDC 530

Query: 671 HSATKLISKIFNREIIARDRNRFHHFKDG 699
           H  TKLISK++ REII RDRNRFHHF+DG
Sbjct: 531 HHVTKLISKVYGREIIVRDRNRFHHFEDG 559



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/388 (28%), Positives = 207/388 (53%), Gaps = 17/388 (4%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           VH+ ++K+G     + ++ LI + A     DL  A  +F    + + V WN +I G+   
Sbjct: 22  VHTHVVKSGFECDSYIVNSLIHLYANGK--DLGAAKQLFSLCSDRDVVSWNAMIDGYVKR 79

Query: 109 SSPVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFV 167
                    + RM+    V  +  ++  I+   A +  I E K++   + +  L S    
Sbjct: 80  GE-----MGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEAKRLFDEMPERNLVS---- 130

Query: 168 HTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREE 227
             S+++ + + G +E A  +F++   RD VS+ +++  YA  G  ++A  LFD+M  R  
Sbjct: 131 WNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQM--RAV 188

Query: 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA 287
              P E+TVV++LSACAH+G+L+ G  + + I  + +  N  V  AL+DMY+KCG +  A
Sbjct: 189 GVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLA 248

Query: 288 RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347
             +F ++E +DV++WN +I G       KEA  LF++M ++++EPND+TF+++L AC++ 
Sbjct: 249 TQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHA 308

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNA 406
           G +D G+ +   +  ++     V  +  +ID+ A+ G ++ A ++   M  +   ++  A
Sbjct: 309 GMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGA 368

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQP 434
           ++ G  +HG  +    +  R+I   LQP
Sbjct: 369 LLGGCRIHGNFELGEMVGKRLI--NLQP 394



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 154/299 (51%), Gaps = 16/299 (5%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G++  A  +F  +   + V WN+++  ++    P  A+  + +M   G  P   T   +L
Sbjct: 142 GNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 201

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
            +CA + A+ +G  +H ++    +E +  V T+L++MYA+ G++  A  VFN    +D +
Sbjct: 202 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 261

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           ++  +I G A  G++ +A+QLF EM  +E +  PN+ T V +LSAC+H G ++ G  +  
Sbjct: 262 AWNTIIAGMAIHGHVKEAQQLFKEM--KEASVEPNDITFVAMLSACSHAGMVDEGQKLLD 319

Query: 258 LI-EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDY 315
            +   +G+   +   + +ID+ ++ G L +A +L  ++  + +  +   ++GG     ++
Sbjct: 320 CMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGNF 379

Query: 316 KEALMLFRQMLQSNIEP---NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
           +   M+ ++++  N++P        LS + A A        KW  A   +N  K+N +S
Sbjct: 380 ELGEMVGKRLI--NLQPCHSGRYILLSNIYAAAK-------KWDDARKVRNLMKVNGIS 429


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 267/679 (39%), Positives = 413/679 (60%), Gaps = 15/679 (2%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEI-CAVSPFGDLSYALLVFETIRE 92
           LA   K  ++   +QVH   +K GL       + LI + C +  FG   +A  VF+ + E
Sbjct: 322 LATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFG---FARTVFDNMSE 378

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKI-SAISEGKQ 151
            + + WN++I G + +   V A+  +++++  G  P+ YT   +LK+ + +   +S  KQ
Sbjct: 379 RDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQ 438

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +H H +K+   SD FV T+LI+ Y++N  ++ A ++F + +  D V++ A++ GY     
Sbjct: 439 VHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAGYTQSHD 497

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
                +LF  M  + E    ++ T+ TV   C  + ++  G  V +     G   +L V+
Sbjct: 498 GHKTLKLFALMHKQGER--SDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVS 555

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           + ++DMY KCGD+  A+  F+SI   D ++W  MI G     + + A  +F QM    + 
Sbjct: 556 SGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVL 615

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS---LWTSLIDMYAKCGNIKA 388
           P++ T  ++  A + L AL+ G+ IHA    N  KLN  +   + TSL+DMYAKCG+I  
Sbjct: 616 PDEFTIATLAKASSCLTALEQGRQIHA----NALKLNCTNDPFVGTSLVDMYAKCGSIDD 671

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A  +F  +    + +WNAM+ GLA HG+  + L LF +M   G++PD +TF+GVLSAC+H
Sbjct: 672 AYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSH 731

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
           +GL+    ++  +M  DY I P+++HY C+ D LGRAGL  +AE L+++M M+  A+++ 
Sbjct: 732 SGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYR 791

Query: 509 SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568
           +LL ACRV G  E G+ VA  LLELEP +  AYVLLSNMYA A +WD++   RT +    
Sbjct: 792 TLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHK 851

Query: 569 MKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
           +KK PG S IEV + +H F+V D+ + Q++ IY  + ++   +++ G+VP+T   L D++
Sbjct: 852 VKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVE 911

Query: 629 EEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIAR 688
           EE KE AL +HSEKLA+A+GL+ST P T IR++KNLRVCG+CH+A K I+K++NREI+ R
Sbjct: 912 EEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLR 971

Query: 689 DRNRFHHFKDGNCSCNDYW 707
           D NRFH FKDG CSC DYW
Sbjct: 972 DANRFHRFKDGICSCGDYW 990



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 153/614 (24%), Positives = 252/614 (41%), Gaps = 107/614 (17%)

Query: 50  HSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSS 109
           H    K GL   +F    L+ I     FG +    ++FE +   + V+WN +++ +    
Sbjct: 168 HGYACKIGLDGDEFVAGALVNI--YLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMG 225

Query: 110 SPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHT 169
               AI        SG  PN  T    L+  A+IS               G +SD     
Sbjct: 226 FKEEAIDLSSAFHSSGLNPNEIT----LRLLARIS---------------GDDSDAGQVK 266

Query: 170 SLINMYAQNGELESARLVFNKSSLRDAV---SYTALITGYASRGYLDDARQLFDEMPIRE 226
           S  N    N     + ++F    L + +    Y+AL+  +A                + E
Sbjct: 267 SFAN---GNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFAD---------------MVE 308

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
            +   ++ T + +L+    + SL LG  V  +    GL   L V+N+LI+MY K      
Sbjct: 309 SDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGF 368

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           AR +F+++ +RD+ISWN +I G        EA+ LF Q+L+  ++P+  T  SVL A + 
Sbjct: 369 ARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASS 428

Query: 347 L-GALDLGKWIHAYIDKNHQKLNNVS---LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           L   L L K +H +      K+NNVS   + T+LID Y++   +K AE +F+   +  L 
Sbjct: 429 LPEGLSLSKQVHVHA----IKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNFD-LV 483

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           +WNAM++G        K L LF+ M  +G + DD T   V   C     ++ G+Q     
Sbjct: 484 AWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYA 543

Query: 463 IQD-YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR-- 519
           I+  Y +   L     ++D+  + G    A+    ++ + PD   WT+++  C  +G   
Sbjct: 544 IKSGYDLD--LWVSSGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTMISGCIENGEEE 600

Query: 520 ---------------------------------LELGESVAKHLLELEPEN-PGAYVLLS 545
                                            LE G  +  + L+L   N P     L 
Sbjct: 601 RAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLV 660

Query: 546 NMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLD 605
           +MYA  G  DD   +  R+    M  +   +++         LVG   H + K   ++  
Sbjct: 661 DMYAKCGSIDDAYCLFKRIE---MMNITAWNAM---------LVGLAQHGEGKETLQLFK 708

Query: 606 EIDALLEKSGFVPD 619
           ++ +L    G  PD
Sbjct: 709 QMKSL----GIKPD 718



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 122/484 (25%), Positives = 213/484 (44%), Gaps = 54/484 (11%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ 95
           +L KCT        H++I+    +  +F ++ LI +   S  G L+YA  VF+ + + + 
Sbjct: 56  MLGKCT--------HARILTFEENPERFLINNLISM--YSKCGSLTYARRVFDKMPDRDL 105

Query: 96  VIWNNIIRGHSLSSSPVV---AIKFYVRMILSGFVPNT--YTFPFILKSCAKISAISEGK 150
           V WN+I+  ++ SS  VV      F +  IL   V  T   T   +LK C     +   +
Sbjct: 106 VSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASE 165

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
             H +  K+GL+ D FV  +L+N+Y + G+++  +++F +   RD V +  ++  Y   G
Sbjct: 166 SFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMG 225

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
           + ++A  L            PNE T+  +                 + I G         
Sbjct: 226 FKEEAIDL--SSAFHSSGLNPNEITLRLL-----------------ARISGDD------- 259

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
                   S  G +    +  ++    ++I  N  +  Y H+  Y   L  F  M++S++
Sbjct: 260 --------SDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDV 311

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           E + VTF+ +L     + +L LG+ +H    K    L  +++  SLI+MY K      A 
Sbjct: 312 ECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDL-MLTVSNSLINMYCKLRKFGFAR 370

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
            VFD M  + L SWN++I+G+A +G   +A+ LF +++  GL+PD  T   VL A +   
Sbjct: 371 TVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLP 430

Query: 451 L-LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
             L + +Q     I+   +S        ++D   R     EAE L +      D   W +
Sbjct: 431 EGLSLSKQVHVHAIKINNVSDSFVSTA-LIDAYSRNRCMKEAEILFERHNF--DLVAWNA 487

Query: 510 LLGA 513
           ++  
Sbjct: 488 MMAG 491



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 14/172 (8%)

Query: 350 LDLGKWIHAYI---DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
           L LGK  HA I   ++N ++     L  +LI MY+KCG++  A +VFD M  + L SWN+
Sbjct: 55  LMLGKCTHARILTFEENPERF----LINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNS 110

Query: 407 MISGLAMHGKA-----DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
           +++  A   +       +A  LF  +  + +    +T   +L  C H+G +    + F+ 
Sbjct: 111 ILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV-WASESFHG 169

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
                 +       G +V++  + G   E + L + M  + D  +W  +L A
Sbjct: 170 YACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYR-DVVLWNLMLKA 220


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 250/574 (43%), Positives = 369/574 (64%), Gaps = 5/574 (0%)

Query: 136  ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
            +L  C   +AI EG+++HAH++K   E   ++ T LI +Y +   L  AR V ++   R+
Sbjct: 483  VLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERN 542

Query: 196  AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
             VS+TA+I+GY+ RGY  +A  LF EM +      PNE T  TVL++C      +LG  +
Sbjct: 543  VVSWTAMISGYSQRGYASEALHLFVEMLM--SGTAPNEFTFATVLTSCTSSSGFQLGRQI 600

Query: 256  CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
             SL+      S++ V ++L+DMY+K G + +AR +F+ + +RDV+S   +I GY      
Sbjct: 601  HSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLD 660

Query: 316  KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
            +EAL LFR++ +  +  N VT+ SVL A + L ALD G+ +H+++ +       V L  S
Sbjct: 661  EEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFY-VVLQNS 719

Query: 376  LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG-LQP 434
            LIDMY+KCG++  + ++FD M  +T+ SWNAM+ G + HG   +A+ LF  M  E  ++P
Sbjct: 720  LIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKP 779

Query: 435  DDITFVGVLSACNHAGLLDIGRQYFNAMI-QDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
            D +TF+ VLS C+H G+ D G + F  M+ Q     P+++HYGC+VDL GRAG  +EA  
Sbjct: 780  DSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFE 839

Query: 494  LLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGR 553
             +K M  +P AAIW SLLGACRVH  + +GE VA+ LLE+E EN G YV+LSN+YA AGR
Sbjct: 840  FIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGR 899

Query: 554  WDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEK 613
            WDDV T+R  + +K + K PG S IE+   +H F   D+ HP+ + ++  + E+   +++
Sbjct: 900  WDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKE 959

Query: 614  SGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSA 673
            +G+VP+ S VLYD+D+E KE  L  HSEKLA+A+GLI T  GT +RI+KNLR+C +CH+ 
Sbjct: 960  AGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNF 1019

Query: 674  TKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
             K +S+++ RE+  RD+NRFHH   G CSC DYW
Sbjct: 1020 AKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 1053



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 128/387 (33%), Positives = 214/387 (55%), Gaps = 12/387 (3%)

Query: 35  ALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEIC-AVSPFGDLSYALLVFETI 90
           ++L++C +   I++   VH+ +IKT      +  ++LI +       GD   A  V + +
Sbjct: 482 SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGD---ARRVLDEM 538

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            E N V W  +I G+S       A+  +V M++SG  PN +TF  +L SC   S    G+
Sbjct: 539 PERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGR 598

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           QIH+ V+K   ES  FV +SL++MYA+ G++  AR VF+    RD VS TA+I+GYA  G
Sbjct: 599 QIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLG 658

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
             ++A  LF  +  + E    N  T  +VL+A + + +L+ G  V S +    L   + +
Sbjct: 659 LDEEALDLFRRL--QREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVL 716

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN- 329
            N+LIDMYSKCG L  +R +F+S+ +R VISWN M+ GY+     +EA+ LF+ M + N 
Sbjct: 717 QNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENK 776

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWI-HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
           ++P+ VTFL+VL  C++ G  D G  I +  +++       +  +  ++D++ + G ++ 
Sbjct: 777 VKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEE 836

Query: 389 AEQVFDGMGYK-TLASWNAMISGLAMH 414
           A +    M ++ T A W +++    +H
Sbjct: 837 AFEFIKKMPFEPTAAIWGSLLGACRVH 863


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 257/488 (52%), Positives = 328/488 (67%), Gaps = 5/488 (1%)

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
           +R     P+  T   +L + A    L LG  V + I   GL  +  V  +LI MYS  G 
Sbjct: 55  MRFHGVQPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGL 114

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFR--QMLQSN-IEPNDVTFLSV 340
           +  AR+LF  + +R+VISW+ MI GY     YKEAL LFR  QML  N + PN+ T   V
Sbjct: 115 VDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGV 174

Query: 341 LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG-YK 399
           L AC  LGAL+ GKW HAYIDK    ++ V L T+LIDMYAKCG+++ A  VF  +G  K
Sbjct: 175 LAACGRLGALEHGKWAHAYIDKCGMPVD-VVLGTALIDMYAKCGSVEKATWVFSNLGPNK 233

Query: 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF 459
            + +W+AMISGLAMHG A++ + LFS+MI +G++P+ +TF+ V  AC H GL+  G+ Y 
Sbjct: 234 DVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYL 293

Query: 460 NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
             M +DY I P +QHYGCMVDL GRAG   EA  ++K+M M+PD  +W +LL   R+HG 
Sbjct: 294 RRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGD 353

Query: 520 LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIE 579
           +E  E   K L+ELEP N GAYVLLSN+YA  GRW+DV  +R  +   G+KKVPGCS IE
Sbjct: 354 IETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIE 413

Query: 580 VGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHH 639
           VG V+HEF VGD  HP+++ I+ ML+EI   L+  G+V +T EVL D+DEE KE ALS H
Sbjct: 414 VGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLH 473

Query: 640 SEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDG 699
           SEKLA+AYG + T PGT IRIVKNLR+C +CH A K+ISK+F+REII RD NRFHHF  G
Sbjct: 474 SEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQG 533

Query: 700 NCSCNDYW 707
            CSC DYW
Sbjct: 534 LCSCRDYW 541



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 117/340 (34%), Positives = 189/340 (55%), Gaps = 8/340 (2%)

Query: 97  IWNNIIRGHSLSSSPVVA-----IKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           +WN +IR H  + +         I  +VRM   G  P+ +TFPF+L+S A  S +  G+ 
Sbjct: 26  LWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRS 85

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +HA +L+ GL  DPFV TSLI+MY+ +G ++ AR +F     R+ +S++ +I GY   G 
Sbjct: 86  VHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQ 145

Query: 212 LDDARQLFDEMPIREENFV-PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
             +A  LF EM +   N V PNE T+  VL+AC  +G+LE G W  + I+  G+  ++ +
Sbjct: 146 YKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVL 205

Query: 271 TNALIDMYSKCGDLVKARDLFESI-EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
             ALIDMY+KCG + KA  +F ++   +DV++W+ MI G       +E + LF +M+   
Sbjct: 206 GTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQG 265

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           + PN VTFL+V  AC + G +  GK     + +++  +  +  +  ++D+Y + G IK A
Sbjct: 266 VRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEA 325

Query: 390 EQVFDGMGYKT-LASWNAMISGLAMHGKADKALSLFSRMI 428
             V   M  +  +  W A++SG  MHG  +       ++I
Sbjct: 326 WNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLI 365



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 151/294 (51%), Gaps = 12/294 (4%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           + VH+QI++ GL    F  + LI + + S   D++  L  F  + E N + W+ +I G+ 
Sbjct: 84  RSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNL--FAVMPERNVISWSCMINGYV 141

Query: 107 LSSSPVVAIKFYVRMILSG---FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLES 163
                  A+  +  M + G     PN +T   +L +C ++ A+  GK  HA++ K G+  
Sbjct: 142 RCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPV 201

Query: 164 DPFVHTSLINMYAQNGELESARLVF-NKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
           D  + T+LI+MYA+ G +E A  VF N    +D ++++A+I+G A  G  ++   LF +M
Sbjct: 202 DVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKM 261

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVTNALIDMYSKC 281
               +   PN  T + V  AC H G +  G +++  + E + +   +     ++D+Y + 
Sbjct: 262 I--NQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRA 319

Query: 282 GDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
           G + +A ++ +S+  + DV+ W  ++ G     D +   +  +++++  +EP +
Sbjct: 320 GRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIE--LEPTN 371


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 247/591 (41%), Positives = 369/591 (62%), Gaps = 34/591 (5%)

Query: 148 EGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA 207
           E KQ+HAH+LK          + + ++ A N     A+L+F      +   +   +  +A
Sbjct: 30  ELKQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFA 89

Query: 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
                 DA  LF  +  RE +  P+  T   VL AC+ +  +  G  V   +E  GL SN
Sbjct: 90  EGDSPADAISLFYRL--REFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSN 147

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMI--------------------- 306
           + + N ++ +Y+ CG++  AR +F+ + +RDVI+WN+MI                     
Sbjct: 148 MFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPE 207

Query: 307 ----------GGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
                     GGY      KEA+ LF +M  + + PN+VT ++VL ACA +G L LG+ I
Sbjct: 208 RNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRI 267

Query: 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGK 416
           H + +++  +  N+ +  +LIDMY KCG ++ A ++FD M  +T+ SW+AMI+GLA HG+
Sbjct: 268 HDFSNRSGYE-KNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGR 326

Query: 417 ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG 476
           A+ AL+LF++MI  G++P+ +TF+G+L AC+H G+++ GR+YF +M +DY I P+++HYG
Sbjct: 327 AEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYG 386

Query: 477 CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536
           CMVDL  RAGL  EA   +  M + P+  +W +LLG C+VH  ++L E   +HL +L+P 
Sbjct: 387 CMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPL 446

Query: 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQ 596
           N G YV+LSN+YA AGRW+DVA +R  + D+G+KK PG SSI V  VV+ F+ GD  HPQ
Sbjct: 447 NDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTHPQ 506

Query: 597 SKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGT 656
           ++ I++  +++   ++  G+VP+TS VL DM+E+ KE  L  HSEKLA+ +GLI T PGT
Sbjct: 507 TEEIFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTPGT 566

Query: 657 TIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            IRI+KNLRVC +CH+A K+IS +  REI+ RDRNRFH FK+G+CSC DYW
Sbjct: 567 VIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 617



 Score =  231 bits (590), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 133/437 (30%), Positives = 225/437 (51%), Gaps = 40/437 (9%)

Query: 8   LTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSK 67
           +  S S+LH  P        L ++PS  LL   T+   +KQ+H+ ++KT    +   LS+
Sbjct: 1   MICSLSLLHVSP--------LHHRPSTHLLHNFTSPFELKQLHAHLLKTNSPLSSLPLSR 52

Query: 68  LIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV 127
           +  +CA +     SYA L+F+ +       WN  +R  +   SP  AI  + R+      
Sbjct: 53  VASVCAFN--SSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDIS 110

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P+ YT  F+LK+C+++  +  GK +H +V KLGL+S+ F+   ++++YA  GE+  AR V
Sbjct: 111 PDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKV 170

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR---------------------- 225
           F+K   RD +++  +I      G  + A +LF EMP R                      
Sbjct: 171 FDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAI 230

Query: 226 -------EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMY 278
                  +   +PNE TVV VL ACA MG+L LG  +       G   N+ V N LIDMY
Sbjct: 231 DLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMY 290

Query: 279 SKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
            KCG L  A  +F+++E+R V+SW+ MI G       ++AL LF +M+ + ++PN VTF+
Sbjct: 291 VKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFI 350

Query: 339 SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
            +L AC+++G ++ G+   A + +++  +  +  +  ++D++++ G ++ A +    M  
Sbjct: 351 GILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPI 410

Query: 399 K-TLASWNAMISGLAMH 414
                 W A++ G  +H
Sbjct: 411 APNGVVWGALLGGCKVH 427


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 271/733 (36%), Positives = 418/733 (57%), Gaps = 64/733 (8%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ 95
           L  +  N    K++H  IIK+  +   F  + LI   A S  G+++YA  VF+ + +PN 
Sbjct: 14  LCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLIN--AYSKLGNITYARHVFDKMPQPNS 71

Query: 96  -------------------------------VIWNNIIRGHSLSSSPVVAIKFYVRMILS 124
                                          V WN++I G+    S V A+K Y  M+  
Sbjct: 72  FSWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKD 131

Query: 125 GFVP-NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELES 183
           G +  N  TF  +L   +    +  G+QIH  ++K G  +  FV +SL++MYA+ G +  
Sbjct: 132 GVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSV 191

Query: 184 ARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP-------------------- 223
           A  VF++   R+ V Y  +ITG    G + D+++LF  M                     
Sbjct: 192 ASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLE 251

Query: 224 ---------IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274
                    +R+E    ++ T  +VL+AC  + +L+ G  + +LI   G   N+ V +AL
Sbjct: 252 AEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSAL 311

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
           +DMY KC  +  A  +F+ +  ++V+SW  M+ GY      +EA+ +F  M ++ IEP+D
Sbjct: 312 VDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDD 371

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
            T  SV+ +CA L +L+ G   H     +   ++ +++  +LI +Y KCG+I+ + Q+FD
Sbjct: 372 FTLGSVISSCANLASLEEGAQFHCQALVSGL-ISFITVSNALITLYGKCGSIEDSNQLFD 430

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
            M ++   SW A++SG A  GKA++ + LF RM+ +GL+PD +TF+ VLSAC+ AGL++ 
Sbjct: 431 EMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVER 490

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
           G+QYF +M++D+ I P   HY CM+DL GRAG  +EA+  +  M   PD+  W +LL +C
Sbjct: 491 GQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSC 550

Query: 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPG 574
           R++G  E+G+  A+ LLEL+P+NP  Y+LLS++YA  G+W +VA +R  + +KG +K PG
Sbjct: 551 RLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPG 610

Query: 575 CSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEG 634
            S I+  S V+ F   D+  P S  IY  L++++  + + G+VPD S VL+D+++  K  
Sbjct: 611 FSWIKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVPDASSVLHDVEDSEKMK 670

Query: 635 ALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFH 694
            L+HHSEKLAIA+GL+    G  IR+VKNLRVCG+CH+ATK ISKI  REI+ RD  RFH
Sbjct: 671 MLNHHSEKLAIAFGLLFIPHGLPIRVVKNLRVCGDCHNATKYISKISQREILVRDAVRFH 730

Query: 695 HFKDGNCSCNDYW 707
            FKDG CSC D+W
Sbjct: 731 LFKDGTCSCGDFW 743



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 139/524 (26%), Positives = 236/524 (45%), Gaps = 99/524 (18%)

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK------- 190
           K C +    ++ K++H  ++K     + F++ +LIN Y++ G +  AR VF+K       
Sbjct: 13  KLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSF 72

Query: 191 ---------------SSL---------RDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
                          S++         RD VS+ +LI+GY   G + +A + ++ M +++
Sbjct: 73  SWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSM-MKD 131

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG---- 282
                N  T  T+L   +  G ++LG  +   I   G G+ + V ++L+DMY+K G    
Sbjct: 132 GVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSV 191

Query: 283 -----DLVKARD----------------------LFESIEKRDVISWNVMIGGYTHTSDY 315
                D V+ R+                      LF  +++RD ISW  MI G       
Sbjct: 192 ASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLE 251

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
            EA+ LFR M Q  +  +  TF SVL AC  L AL  GK IH  I ++    +NV + ++
Sbjct: 252 AEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYN-HNVFVGSA 310

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           L+DMY KC +++ AE VF  M  K + SW AM+ G   +G +++A+ +F  M   G++PD
Sbjct: 311 LVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPD 370

Query: 436 DITFVGVLSACNHAGLLDIGRQYF---------------NAMIQDYKISPKLQHYGCMVD 480
           D T   V+S+C +   L+ G Q+                NA+I  Y     ++    + D
Sbjct: 371 DFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFD 430

Query: 481 ------------LLGRAGLFDEAEALLKTME------MKPDAAIWTSLLGACRVHGRLEL 522
                       L+     F +A   +   E      +KPDA  + ++L AC   G +E 
Sbjct: 431 EMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVER 490

Query: 523 GESVAKHLLELEPENPGA--YVLLSNMYAGAGRWDDVATIRTRL 564
           G+   + +L+     P +  Y  + +++  AGR ++      ++
Sbjct: 491 GQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKM 534


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 276/680 (40%), Positives = 395/680 (58%), Gaps = 85/680 (12%)

Query: 37  LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGD-LSYALLVFETIREPNQ 95
             KC +M  ++Q HSQII+ GL +    +  LI  CA +   D L+YAL +F++I +P+ 
Sbjct: 29  FEKCQSMSQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDA 88

Query: 96  VIWNNIIRG--HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
            ++N II+G  HS        +  Y  M+ +  +PN +TFP +L +C K   I  G QIH
Sbjct: 89  FLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRK---IQHGMQIH 145

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
           AH+ K G  +                                +V   +LI  Y +   L+
Sbjct: 146 AHLFKFGFGAH-------------------------------SVCLNSLIHMYVTFQALE 174

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           +AR++F  +P                     H  S+   +W  SLI G            
Sbjct: 175 EARRVFHTIP---------------------HPDSV---SWT-SLISG------------ 197

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
               YSK G + +A  +F+ + +++  SWN M+  Y  T+ + EA  LF +M   N    
Sbjct: 198 ----YSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVL 253

Query: 334 D-VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           D     ++L AC  LGALD GKWIH YI +N  +L++  L T+++DMY KCG ++ A QV
Sbjct: 254 DKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDS-KLTTAIVDMYCKCGCLEKALQV 312

Query: 393 FDGMGY--KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           F  +    + ++SWN MI GLAMHG  + A+ LF  M  + + PDDITF+ +L+AC H+G
Sbjct: 313 FHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSG 372

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L++ GR YF+ MI+ Y I P+++H+GCMVDLLGRAG+  EA  L+  M + PD  +  +L
Sbjct: 373 LVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTL 432

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           LGAC+ H  +ELGE + + ++ELEP N G YVLL+N+YA AG+W+D A +R  ++D+G+K
Sbjct: 433 LGACKKHRNIELGEEIGRRVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVK 492

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVL--YDMD 628
           K PG S IE+   VHEF+ G++ HPQ+K ++  + E+   L+  G+V DT+ VL  +D D
Sbjct: 493 KAPGFSMIELQGTVHEFIAGERNHPQAKELHAKVYEMLEHLKSVGYVADTNGVLHGHDFD 552

Query: 629 EEWK-EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIA 687
           EE   E  L +HSEKLAIA+GL  TKPG T+RI+KNLR+C +CH A KLIS +F+REII 
Sbjct: 553 EEEDGENPLYYHSEKLAIAFGLSRTKPGETLRILKNLRICEDCHHACKLISTVFDREIIV 612

Query: 688 RDRNRFHHFKDGNCSCNDYW 707
           RDR RFH FK G CSC DYW
Sbjct: 613 RDRTRFHRFKMGQCSCQDYW 632


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 236/482 (48%), Positives = 339/482 (70%), Gaps = 2/482 (0%)

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           +N  P+E T+V+++ ACA +G+LE G  + S  +  GL  NL V NA++DMY KC D+  
Sbjct: 5   DNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIES 64

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A+++F  I ++DV+SW  M+ G   +  ++E+L LFR+M    IEP+++T + VL ACA 
Sbjct: 65  AQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQ 124

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
            GALD GK+IH  IDK     + V L T+L+DMYAKCG+I  A QVF  M  + + +WNA
Sbjct: 125 TGALDQGKYIHLLIDKFEINCDLV-LETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNA 183

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
           MI GLAMHG  + A+SLF +M  + L PDD+TF+ +L AC+HAGL+D G   F AM   +
Sbjct: 184 MIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKF 243

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
           +I P+++HYGC+VDLL RA   D+A A ++ M +K ++ +W +LLGACR  G  +L E +
Sbjct: 244 QIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKI 303

Query: 527 AKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHE 586
            + ++ELEP++ G YV+LSN+YAG  +WD    +R ++ +KG++K PGCS IE+  ++H+
Sbjct: 304 XRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQ 363

Query: 587 FLVGDKVHPQSKHIYEMLDEIDALLE-KSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAI 645
           F+ GD+ H Q++ IY M++E+   +    G VP T+ VL+D++EE KE +L  HSEKLAI
Sbjct: 364 FVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAI 423

Query: 646 AYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCND 705
           A GLIST  G+ IRIVKNLRVC +CHS  K+ SK++NREI+ARDR+RFHHFK+G+CSC D
Sbjct: 424 ALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMD 483

Query: 706 YW 707
           +W
Sbjct: 484 FW 485



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 173/314 (55%), Gaps = 5/314 (1%)

Query: 123 LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELE 182
           L    P+  T   ++ +CA++  +  GK +H++  +LGL+ +  V+ ++++MY +  ++E
Sbjct: 4   LDNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIE 63

Query: 183 SARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSA 242
           SA+ VFN+   +D +S+T++++G A  GY  ++  LF +M + +    P+E T+V VLSA
Sbjct: 64  SAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHK--IEPDEITLVGVLSA 121

Query: 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
           CA  G+L+ G ++  LI+   +  +L +  AL+DMY+KCG +  A  +F  +  R+V +W
Sbjct: 122 CAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTW 181

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
           N MIGG       ++A+ LF QM    + P+DVTF+++L AC++ G +D G  +   +  
Sbjct: 182 NAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKN 241

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHGKADKAL 421
             Q    +  +  ++D+  +   +  A    + M  K  +  W  ++      G  D A 
Sbjct: 242 KFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAE 301

Query: 422 SLFSRMIGEGLQPD 435
            +  R+I   L+PD
Sbjct: 302 KIXRRVI--ELEPD 313



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 161/330 (48%), Gaps = 15/330 (4%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           ++L+  C  + N+   K +HS   + GL       + ++++       D+  A  VF  I
Sbjct: 15  VSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDM--YCKCDDIESAQEVFNRI 72

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
           RE + + W +++ G + S     ++  + +M L    P+  T   +L +CA+  A+ +GK
Sbjct: 73  REKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALDQGK 132

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            IH  + K  +  D  + T+L++MYA+ G ++ A  VF +  +R+  ++ A+I G A  G
Sbjct: 133 YIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHG 192

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH-GLGSNLH 269
           + +DA  LFD+M    +  +P++ T + +L AC+H G ++ G  +   ++    +   + 
Sbjct: 193 HGEDAISLFDQM--EXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRME 250

Query: 270 VTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
               ++D+  +   +  A    E++  K + + W  ++G       +  A  + R++++ 
Sbjct: 251 HYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIXRRVIE- 309

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
            +EP D     V+ +  Y G   + +W HA
Sbjct: 310 -LEP-DSCGRYVMLSNLYAG---VSQWDHA 334


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 265/684 (38%), Positives = 402/684 (58%), Gaps = 50/684 (7%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTG--LHNTQFALSKLIEICAVSPFGDLSYALLVFET---- 89
           LL  CT++  +K +HS +   G  LH   F L++LI +   S  GDL  A  +F+     
Sbjct: 31  LLQCCTSLTTLKLIHSSLSTRGFLLHTPHF-LARLIIL--YSKLGDLHSARTLFDHRHHH 87

Query: 90  ----IREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145
                + PN  + N ++R ++ +     AI  Y+ M   G   N +T+PF+LK CA    
Sbjct: 88  HHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELG 147

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
              G+ +H  V++ G  SD FV  +L++MYA+ GE+  A  VF++  +RD V +TA+IT 
Sbjct: 148 AVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITL 207

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           Y        A  LF +M  +EE F+ +E T ++V SA   +G   +              
Sbjct: 208 YEQAERPLKALMLFRKM--QEEGFLGDEITAISVASAVGQLGDGRMA------------- 252

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
                             + +AR +F+ +E+R+ ISWN M+ GYT      +AL LF QM
Sbjct: 253 ------------------ISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQM 294

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
             S  +PN VT L ++ AC+YLG+  LG+ +H ++  +   ++  +L  +++DMY KCG+
Sbjct: 295 QASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDT-TLRNAIMDMYMKCGD 353

Query: 386 IKAAEQVFDG--MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
           +  A ++F+   +G + ++SWN +ISG  +HG   +AL LFSRM  EG++P+DITF  +L
Sbjct: 354 LDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSIL 413

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
           SAC+HAGL+D GR+ F  M +   + P+++HY CMVD+LGRAG  +EA  L+K +  +P 
Sbjct: 414 SACSHAGLIDEGRKCFADMTK-LSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPS 472

Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563
             +W +LL ACR+HG  ELGE  A +L +LEPE+ G YVL+SN+YA + +W +V  +R  
Sbjct: 473 DEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQN 532

Query: 564 LNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEV 623
           +  +G+KK    S IE G+ VH F   D+  P  + +Y  ++ +   ++  G+VPD S V
Sbjct: 533 MKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCV 592

Query: 624 LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNR 683
           L+D++ E KE  L++HSEKLA+A+G++    G  I++ KNLRVC +CH A K IS I+ R
Sbjct: 593 LHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGR 652

Query: 684 EIIARDRNRFHHFKDGNCSCNDYW 707
           +II RD NRFHHF+ G CSC DYW
Sbjct: 653 KIIVRDGNRFHHFQGGRCSCGDYW 676


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 258/576 (44%), Positives = 363/576 (63%), Gaps = 8/576 (1%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN---GELESARLVFNKSS 192
           IL    K +++ E KQI A+ +K   +++P V T LIN    N     ++ A  +F+K  
Sbjct: 38  ILSLIPKCTSLRELKQIQAYTIKTH-QNNPTVLTKLINFCTSNPTIASMDHAHRMFDKIP 96

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
             D V +  +  GYA   + D  R +     +     +P++ T  ++L ACA + +LE G
Sbjct: 97  QPDIVLFNTMARGYAR--FDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACARLKALEEG 154

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
             +  L    G+G N++V   LI+MY+ C D+  AR +F+ I +  V+++N +I      
Sbjct: 155 KQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCARN 214

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
           S   EAL LFR++ +S ++P DVT L  L +CA LGALDLG+WIH Y+ KN      V +
Sbjct: 215 SRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFD-QYVKV 273

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
            T+LIDMYAKCG++  A  VF  M  +   +W+AMI   A HG   +A+S+   M    +
Sbjct: 274 NTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKV 333

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
           QPD+ITF+G+L AC+H GL++ G +YF++M  +Y I P ++HYGCM+DLLGRAG  +EA 
Sbjct: 334 QPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEAC 393

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552
             +  + +KP   +W +LL +C  HG +E+ + V + + EL+  + G YV+LSN+ A  G
Sbjct: 394 KFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDSHGGDYVILSNLCARNG 453

Query: 553 RWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE 612
           RWDDV  +R  + DKG  KVPGCSSIEV +VVHEF  GD VH  S  ++  LDE+   L+
Sbjct: 454 RWDDVNHLRKMMVDKGALKVPGCSSIEVNNVVHEFFSGDGVHSTSTILHHALDELVKELK 513

Query: 613 KSGFVPDTSEVLY-DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCH 671
            +G+VPDTS V Y D+++E KE  L +HSEKLAI YGL++T PGTTIR+VKNLRVC +CH
Sbjct: 514 LAGYVPDTSLVFYADIEDEEKEIVLRYHSEKLAITYGLLNTPPGTTIRVVKNLRVCVDCH 573

Query: 672 SATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +A K IS IF R+II RD  RFHHFKDG CSC DYW
Sbjct: 574 NAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 609



 Score =  240 bits (613), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 129/414 (31%), Positives = 234/414 (56%), Gaps = 7/414 (1%)

Query: 19  PSSDPPYKLLQNQPS--LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSP 76
           P  +P    L+   S  L+L+ KCT+++ +KQ+ +  IKT   N    L+KLI  C  +P
Sbjct: 22  PRHEPNTAALEPPSSSILSLIPKCTSLRELKQIQAYTIKTH-QNNPTVLTKLINFCTSNP 80

Query: 77  -FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPF 135
               + +A  +F+ I +P+ V++N + RG++    P+ AI    +++ SG +P+ YTF  
Sbjct: 81  TIASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSS 140

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           +LK+CA++ A+ EGKQ+H   +KLG+  + +V  +LINMY    ++++AR VF+K     
Sbjct: 141 LLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPC 200

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
            V+Y A+IT  A     ++A  LF E+  +E    P + T++  LS+CA +G+L+LG W+
Sbjct: 201 VVAYNAIITSCARNSRPNEALALFREL--QESGLKPTDVTMLVALSSCALLGALDLGRWI 258

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
              ++ +G    + V  ALIDMY+KCG L  A  +F+ + +RD  +W+ MI  Y      
Sbjct: 259 HEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHG 318

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
            +A+ + R+M ++ ++P+++TFL +L AC++ G ++ G      +   +  + ++  +  
Sbjct: 319 SQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGC 378

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMI 428
           +ID+  + G ++ A +  D +  K T   W  ++S  + HG  + A  +  R+ 
Sbjct: 379 MIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIF 432


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/558 (43%), Positives = 365/558 (65%), Gaps = 4/558 (0%)

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           +Q+HAHV+  G   D  +   L+  YAQ+  ++ A  +F+  ++RD+ +++ ++ G+A  
Sbjct: 20  RQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKA 79

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
           G        F E+        P+  T+  V+  C     L++G  +  ++  HGL S+  
Sbjct: 80  GDHAGCYATFRELL--RCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHF 137

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           V  +L+DMY+KC  +  A+ LFE +  +D+++W VMIG Y   + Y E+L+LF +M +  
Sbjct: 138 VCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAY-ESLVLFDRMREEG 196

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           + P+ V  ++V+ ACA LGA+   ++ + YI +N   L+ V L T++IDMYAKCG++++A
Sbjct: 197 VVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLD-VILGTAMIDMYAKCGSVESA 255

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
            +VFD M  K + SW+AMI+    HG+   A+ LF  M+   + P+ +TFV +L AC+HA
Sbjct: 256 REVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHA 315

Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
           GL++ G ++FN+M +++ + P ++HY CMVDLLGRAG  DEA  L++ M ++ D  +W++
Sbjct: 316 GLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSA 375

Query: 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
           LLGACR+H ++EL E  A  LLEL+P+NPG YVLLSN+YA AG+W+ VA  R  +  + +
Sbjct: 376 LLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKL 435

Query: 570 KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE 629
           KK+PG + IEV +  ++F VGD+ HPQSK IYEML  +   LE +G+VPDT  VL D++E
Sbjct: 436 KKIPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGYVPDTDFVLQDVEE 495

Query: 630 EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
           E K+  L  HSEKLAIA+GLI+   G  IRI KNLRVCG+CH+ +K++S I  R II RD
Sbjct: 496 EVKQEMLYTHSEKLAIAFGLIAIPEGEPIRISKNLRVCGDCHTFSKMVSSIMRRSIIVRD 555

Query: 690 RNRFHHFKDGNCSCNDYW 707
            NRFHHF DG CSC DYW
Sbjct: 556 ANRFHHFNDGTCSCGDYW 573



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 120/392 (30%), Positives = 215/392 (54%), Gaps = 8/392 (2%)

Query: 31  QPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           +  + LL +C N+ +I+QVH+ ++  G        +KL+   A     D +Y+L    T+
Sbjct: 4   ESCIDLLLRCRNVFHIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTM 63

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
           R+     W+ ++ G + +         +  ++  G  P+ YT PF++++C   + +  G+
Sbjct: 64  RDSKT--WSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGR 121

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS-R 209
            IH  VLK GL SD FV  SL++MYA+   +E A+ +F +   +D V++T +I  YA   
Sbjct: 122 VIHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCN 181

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
            Y  ++  LFD M  REE  VP++  +VTV++ACA +G++    +    I  +G   ++ 
Sbjct: 182 AY--ESLVLFDRM--REEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVI 237

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           +  A+IDMY+KCG +  AR++F+ +++++VISW+ MI  Y +    K+A+ LF  ML   
Sbjct: 238 LGTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCA 297

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           I PN VTF+S+L AC++ G ++ G      + + H    +V  +T ++D+  + G +  A
Sbjct: 298 ILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEA 357

Query: 390 EQVFDGMGY-KTLASWNAMISGLAMHGKADKA 420
            ++ + M   K    W+A++    +H K + A
Sbjct: 358 LRLIEAMTVEKDERLWSALLGACRIHSKMELA 389


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 258/593 (43%), Positives = 384/593 (64%), Gaps = 16/593 (2%)

Query: 128 PNTYTFPFILKSCAK---ISAISEGKQI------HAHVLKLGLESDPFVHTSLINMYAQN 178
           PN+ + P  LKS  +   IS +   K I      HA +++ G   DPF+   L+   ++ 
Sbjct: 18  PNSNSNPKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKC 77

Query: 179 GELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVT 238
             ++ A  +F  +   +   YTALI G+ S G   DA QL+  M    ++ +P+   + +
Sbjct: 78  HAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRML--HDSILPDNYLMAS 135

Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK-- 296
           +L AC    +L  G  V S     GL SN  V   ++++Y KCG+L  AR +FE + +  
Sbjct: 136 ILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDV 195

Query: 297 --RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGK 354
             +D + W  MI G+    +   AL  FR M   N+ PN+ T + VL AC+ LGAL++G+
Sbjct: 196 VAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGR 255

Query: 355 WIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMH 414
           W+H+Y+ K   +LN + +  +LI+MY++CG+I  A+ VFD M  + + ++N MISGL+M+
Sbjct: 256 WVHSYMRKFEIELN-LFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMN 314

Query: 415 GKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQH 474
           GK+ +A+ LF  MIG  L+P ++TFVGVL+AC+H GL+D G + F++M +DY + P+++H
Sbjct: 315 GKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEH 374

Query: 475 YGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534
           YGCMVDLLGR G  +EA  L++TM+M PD  +  +LL AC++H  LELGE VAK L +  
Sbjct: 375 YGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRG 434

Query: 535 PENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVH 594
             + G YVLLS++YA +G+W + A +R ++ + GM+K PGCSSIEV + +HEFL+GD  H
Sbjct: 435 QADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRH 494

Query: 595 PQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKP 654
           P+ + IYE L+E++ LL   G+ P+   VL D+++  KE AL+ HSE+LAI YGLIST+P
Sbjct: 495 PRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGLISTEP 554

Query: 655 GTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            T IR++KNLRVC +CHSA KLI+KI  R+++ RDRNRFH+F++G CSC DYW
Sbjct: 555 CTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 607



 Score =  228 bits (581), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 139/445 (31%), Positives = 238/445 (53%), Gaps = 17/445 (3%)

Query: 6   SSLTLS-PSILHFPPSSDPPYKL--LQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQ 62
           +SL  S PS    P S+  P  L  L  +  ++LL +  ++  +  +H+Q+I+ G     
Sbjct: 5   ASLPFSGPSPKPHPNSNSNPKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIRNGHSQDP 64

Query: 63  FALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI 122
           F + +L+  C  S    + YA  +F+    PN  ++  +I G   S +   AI+ Y RM+
Sbjct: 65  FMVFELLRSC--SKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRML 122

Query: 123 LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELE 182
               +P+ Y    ILK+C    A+ EG+++H+  LKLGL S+  V   ++ +Y + GEL 
Sbjct: 123 HDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELG 182

Query: 183 SARLVFNKSS----LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVT 238
            AR VF +       +D V +TA+I G+     ++ A + F  M  + EN  PNE T+V 
Sbjct: 183 DARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGM--QGENVRPNEFTIVC 240

Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD 298
           VLSAC+ +G+LE+G WV S +    +  NL V NALI+MYS+CG + +A+ +F+ ++ RD
Sbjct: 241 VLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRD 300

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
           VI++N MI G +     ++A+ LFR M+   + P +VTF+ VL AC++ G +D G  I  
Sbjct: 301 VITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFH 360

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKAD 418
            + +++     +  +  ++D+  + G +   E+ +D +    +   + M+  L    K  
Sbjct: 361 SMTRDYGVEPQIEHYGCMVDLLGRVGRL---EEAYDLIRTMKMTPDHIMLGTLLSACKMH 417

Query: 419 KALSL---FSRMIGEGLQPDDITFV 440
           K L L    ++++ +  Q D  T+V
Sbjct: 418 KNLELGEQVAKVLEDRGQADSGTYV 442


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 266/683 (38%), Positives = 411/683 (60%), Gaps = 7/683 (1%)

Query: 26  KLLQNQPSL-ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYAL 84
           +L+    SL  LL    +   I ++H+ +I TG+     + +KLI+  + +  G +  A 
Sbjct: 2   RLVVGSKSLKTLLITSKDEPTIAKIHALMILTGIFGHGNSNAKLIQ--SYARLGHIESAR 59

Query: 85  LVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS 144
            VF+   +     WN +I  +S   +   A+  Y RM   G  P++ T+  +LK+C +  
Sbjct: 60  QVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSL 119

Query: 145 AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
            +  G++     +  G   D FV  +++N+YA+ G+++ A  VF+K   RD V +T +IT
Sbjct: 120 DLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMIT 179

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
           G A  G   +A  ++ +M   ++    +   ++ ++ AC  +G  ++G  +   +    +
Sbjct: 180 GLAQNGQAREAVDIYRQM--HKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDI 237

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
             ++ V  +L+DMY+K G L  A  +F  +  ++VISW+ +I G+        AL L   
Sbjct: 238 IMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVD 297

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           M     +P+ V+ +SVL AC+ +G L LGK +H YI +     + VS  T++IDMY+KCG
Sbjct: 298 MQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRRLH-FDCVSS-TAVIDMYSKCG 355

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
           ++  A  VFD + ++   SWNA+I+   +HG  ++ALSLF +M    ++PD  TF  +LS
Sbjct: 356 SLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLS 415

Query: 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504
           A +H+GL++ GR +F+ M+ +YKI P  +HY CMVDLL RAG  +EA+ L+++M  +P  
Sbjct: 416 AFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGI 475

Query: 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564
           AIW +LL  C  HG+  +GE  AK +LEL P++PG Y L+SN +A A RWD+VA +R  +
Sbjct: 476 AIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIM 535

Query: 565 NDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVL 624
              GMKKVPG S +EV   +H FL+ DK H Q + I ++L ++D  ++  G+VP T  VL
Sbjct: 536 KKTGMKKVPGYSVMEVNGKLHAFLMEDKSHHQYEEIMQVLGKLDYEMKAMGYVPKTEFVL 595

Query: 625 YDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNRE 684
           ++++EE KE  L +HSE+LAIA+GL++T PGT + I KNLRVCG+CH ATK ISKI NRE
Sbjct: 596 HNLEEEVKERMLCNHSERLAIAFGLLNTGPGTRLLITKNLRVCGDCHEATKFISKIVNRE 655

Query: 685 IIARDRNRFHHFKDGNCSCNDYW 707
           I+ RD  RFHHFKDG CSC DYW
Sbjct: 656 IVVRDVKRFHHFKDGVCSCGDYW 678


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 260/698 (37%), Positives = 411/698 (58%), Gaps = 13/698 (1%)

Query: 18  PPSSDPPYKLLQNQPSLA--------LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLI 69
           P SS   Y  L+   +L+         ++ C+N +++  +H+  I  G  +  F  S L+
Sbjct: 91  PSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLMLLHAHSIIDGYGSNVFVGSALV 150

Query: 70  EICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPN 129
           ++     F  + YA  VF+ + E + V+WN +I G   +     +I+ +  M+  G   +
Sbjct: 151 DL--YCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVD 208

Query: 130 TYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN 189
           + T   +L + A++  +  G  I    LK+G     +V T LI++Y++ G++ +ARL+F 
Sbjct: 209 SSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFR 268

Query: 190 KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL 249
           + +  D ++Y A+I+G+ + G  + + +LF E+    E    + ST+V ++   +  G L
Sbjct: 269 RINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERV--SSSTIVGLIPLHSPFGHL 326

Query: 250 ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309
            L   +       G+  N  V+ A   +Y+K  ++  AR LF+   ++ V++WN MI GY
Sbjct: 327 HLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGY 386

Query: 310 THTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNN 369
           T     + A+ LF++M+++   PN VT  ++L ACA LG+L  GKW+H  I K+     N
Sbjct: 387 TQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLI-KSENLEPN 445

Query: 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG 429
           + + T+L+DMYAKCGNI  A Q+FD M  K   +WN MI G  +HG   +AL L++ M+ 
Sbjct: 446 IYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLH 505

Query: 430 EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489
            G  P  +TF+ VL AC+HAGL+  G + F+ M+  Y+I P ++HY CMVD+LGR+G  +
Sbjct: 506 LGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLE 565

Query: 490 EAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549
           +A   +K M ++P  A+W +LLGAC +H   ++    ++ L EL+P + G YVLLSN+Y+
Sbjct: 566 KALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPGSVGYYVLLSNIYS 625

Query: 550 GAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDA 609
               +   A+IR  +  + + K PGC+ IEV    H F+ GD+ H  +  IY  L+++  
Sbjct: 626 VERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHSHATDIYAKLEKLTG 685

Query: 610 LLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGN 669
            + + G+  +T   L+D++EE KE A++ HSEKLAIA+GLI+T+PG  IRI+KNLRVC +
Sbjct: 686 KMREMGYQAETVPALHDVEEEEKELAVNVHSEKLAIAFGLITTEPGNEIRIIKNLRVCLD 745

Query: 670 CHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           CH+ATK ISKI  R I+ RD NRFHHFKDG CSC DYW
Sbjct: 746 CHTATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 783



 Score =  229 bits (584), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 154/523 (29%), Positives = 258/523 (49%), Gaps = 12/523 (2%)

Query: 28  LQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVF 87
           L      +L++K +   ++ Q H+Q I  G       L+KL +   +  F    +A  +F
Sbjct: 10  LSRNTLFSLINKASTFPHLAQTHAQFILNGYRFDLATLTKLTQ--KLFDFSATRHARALF 67

Query: 88  ETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMIL-SGFVPNTYTFPFILKSCAKISAI 146
            ++ +P+  ++N ++RG SL+ SP  +I  Y  +   +   P+ +T+ F + +C+    +
Sbjct: 68  FSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHL 127

Query: 147 SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGY 206
                +HAH +  G  S+ FV ++L+++Y +   +  AR VF+    RD V +  +I G 
Sbjct: 128 ---MLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGL 184

Query: 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS 266
                 DD+ QLF EM    +    + STV  VL A A +  L++G  +  L    G G 
Sbjct: 185 VKNCCFDDSIQLFREMV--ADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGF 242

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML 326
             +V   LI +YSKCGD+  AR LF  I + D+I++N MI G+T     + ++ LFR++L
Sbjct: 243 CDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELL 302

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
            S    +  T + ++P  +  G L L   IH +  K+   LN  ++ T+   +Y K   I
Sbjct: 303 FSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNP-TVSTAFTAIYNKLNEI 361

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
             A  +FD    KT+ +WNAMISG   +G  + A+SLF  M+     P+ +T   +LSAC
Sbjct: 362 DLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSAC 421

Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
              G L  G+ + + +I+   + P +     +VD+  + G   EA  L  +M  K +   
Sbjct: 422 AQLGSLSFGK-WVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEK-NTVT 479

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549
           W +++    +HG       +   +L L   NP A   LS +YA
Sbjct: 480 WNTMIFGYGLHGYGHEALKLYNEMLHL-GYNPSAVTFLSVLYA 521


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 268/706 (37%), Positives = 422/706 (59%), Gaps = 41/706 (5%)

Query: 37  LSKCTNMQ---NIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           LS C   +   N  Q+H  I+K G     F  + L+   A    G+L  A  VF+ + E 
Sbjct: 141 LSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYA--ECGELDSARKVFDEMSER 198

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQI 152
           N V W ++I G++       A+  + RM+    V PN+ T   ++ +CAK+  +  G+++
Sbjct: 199 NVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKV 258

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           +A +   G+E +  + ++L++MY +   ++ A+ +F++    +     A+ + Y  +G  
Sbjct: 259 YAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLT 318

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
            +A  +F+ M   +    P+  ++++ +S+C+ + ++  G      +  +G  S  ++ N
Sbjct: 319 REALGVFNLM--MDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICN 376

Query: 273 ALIDMYSKC-------------------------------GDLVKARDLFESIEKRDVIS 301
           ALIDMY KC                               G++  A + FE++ +++++S
Sbjct: 377 ALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVS 436

Query: 302 WNVMIGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           WN +I G    S ++EA+ +F  M  Q  +  + VT +S+  AC +LGALDL KWI+ YI
Sbjct: 437 WNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYI 496

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
           +KN  +L+ V L T+L+DM+++CG+ ++A  +F+ +  + +++W A I  +AM G A++A
Sbjct: 497 EKNGIQLD-VRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERA 555

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
           + LF  MI +GL+PD + FVG L+AC+H GL+  G++ F +M++ + +SP+  HYGCMVD
Sbjct: 556 IELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVD 615

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540
           LLGRAGL +EA  L++ M M+P+  IW SLL ACRV G +E+    A+ +  L PE  G+
Sbjct: 616 LLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGS 675

Query: 541 YVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHI 600
           YVLLSN+YA AGRW+D+A +R  + +KG++K PG SSI++    HEF  GD+ HP+  +I
Sbjct: 676 YVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNI 735

Query: 601 YEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRI 660
             MLDE+       G VPD S VL D+DE+ K   LS HSEKLA+AYGLIS+  GTTIRI
Sbjct: 736 EAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRI 795

Query: 661 VKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDY 706
           VKNLRVC +CHS  K  SK++NREII RD NRFH+ + G CSC D+
Sbjct: 796 VKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDF 841



 Score =  275 bits (704), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 176/547 (32%), Positives = 276/547 (50%), Gaps = 46/547 (8%)

Query: 1   MALPPSSLTLSPSILHFPPSSDPPY----KLLQNQPSLALLSKCTNMQNIKQVHSQIIKT 56
           MA+  + L LSP +L    ++ P      K  +  PS   L  C  +  +K  H  + K 
Sbjct: 1   MAMLGNVLHLSPMVLATTTTTKPSLLNQSKCTKATPSS--LKNCKTIDELKMFHRSLTKQ 58

Query: 57  GLHNTQFALSKLI-EICAVSPFGDLSYALLVFETIREPNQV-IWNNIIRGHSLSSSPVVA 114
           GL N    ++KL+   C +     LS+A  VFE         ++N++IRG++ S     A
Sbjct: 59  GLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEA 118

Query: 115 IKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINM 174
           I  ++RM+ SG  P+ YTFPF L +CAK  A   G QIH  ++K+G   D FV  SL++ 
Sbjct: 119 ILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHF 178

Query: 175 YAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNES 234
           YA+ GEL+SAR VF++ S R+ VS+T++I GYA R +  DA  LF  M +R+E   PN  
Sbjct: 179 YAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM-VRDEEVTPNSV 237

Query: 235 TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
           T+V V+SACA +  LE G  V + I   G+  N  + +AL+DMY KC  +  A+ LF+  
Sbjct: 238 TMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEY 297

Query: 295 EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGK 354
              ++   N M   Y      +EAL +F  M+ S + P+ ++ LS + +C+ L  +  GK
Sbjct: 298 GASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGK 357

Query: 355 WIHAYIDKN-HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAM 413
             H Y+ +N  +  +N+    +LIDMY KC     A ++FD M  KT+ +WN++++G   
Sbjct: 358 SCHGYVLRNGFESWDNIC--NALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVE 415

Query: 414 HGKADKALSLFSRM--------------------------------IGEGLQPDDITFVG 441
           +G+ D A   F  M                                  EG+  D +T + 
Sbjct: 416 NGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMS 475

Query: 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK 501
           + SAC H G LD+ + +    I+   I   ++    +VD+  R G  + A ++  ++  +
Sbjct: 476 IASACGHLGALDLAK-WIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNR 534

Query: 502 PDAAIWT 508
            D + WT
Sbjct: 535 -DVSAWT 540


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 260/576 (45%), Positives = 358/576 (62%), Gaps = 38/576 (6%)

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L SC   S ++E KQ H+ +++LGL +D                              DA
Sbjct: 27  LDSC---STMAELKQYHSQIIRLGLSAD-----------------------------NDA 54

Query: 197 VSYTALITGYASRGYL--DDARQ-LFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
           +         +  GYL    AR  +F    +  ++  PN+ T   ++ AC    ++E G 
Sbjct: 55  MGRVIKFCAISKSGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGK 114

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD--VISWNVMIGGYTH 311
            + + +   G G++    N LI MY     L +AR +F+++ +RD   +SWN MI  Y  
Sbjct: 115 QIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQ 174

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
           ++   EA  LF +M   N+  +     S+L AC  LGAL+ GKWIH YI+K+  +L++  
Sbjct: 175 SNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDS-K 233

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
           L T++IDMY KCG ++ A +VF+ +  K ++SWN MI GLAMHGK + A+ LF  M  E 
Sbjct: 234 LATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREM 293

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
           + PD ITFV VLSAC H+GL++ G+ YF  M +   + P ++H+GCMVDLLGRAGL +EA
Sbjct: 294 VAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEA 353

Query: 492 EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA 551
             L+  M + PDA +  +L+GACR+HG  ELGE + K ++ELEP N G YVLL+N+YA A
Sbjct: 354 RKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASA 413

Query: 552 GRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALL 611
           GRW+DVA +R  +ND+G+KK PG S IE  S V EF+ G + HPQ+K IY  LDEI   +
Sbjct: 414 GRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETI 473

Query: 612 EKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCH 671
              G+VPDT  VL+D+DEE KE  L +HSEKLAIA+GL+ TKPG T+RI KNLR+C +CH
Sbjct: 474 RSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCH 533

Query: 672 SATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            A+KLISK+++REII RDRNRFHHF+ G CSC DYW
Sbjct: 534 QASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 569



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 128/395 (32%), Positives = 203/395 (51%), Gaps = 31/395 (7%)

Query: 37  LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQV 96
           L  C+ M  +KQ HSQII+ GL     A+ ++I+ CA+S  G L +            Q+
Sbjct: 27  LDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGYLRW------------QL 74

Query: 97  IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHV 156
             N I                Y RM+     PN +T+P ++++C    AI EGKQIHAHV
Sbjct: 75  ARNCIF--------------MYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHV 120

Query: 157 LKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD--AVSYTALITGYASRGYLDD 214
           LK G  +D F   +LI+MY     LE AR VF+    RD  +VS+ A+I  Y     L +
Sbjct: 121 LKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHE 180

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274
           A  LFD M  R EN V ++    ++LSAC  +G+LE G W+   IE  G+  +  +   +
Sbjct: 181 AFALFDRM--RLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTV 238

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
           IDMY KCG L KA ++F  + ++ + SWN MIGG       + A+ LF++M +  + P+ 
Sbjct: 239 IDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDG 298

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           +TF++VL ACA+ G ++ GK    Y+ +       +  +  ++D+  + G ++ A ++ +
Sbjct: 299 ITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLIN 358

Query: 395 GMGYKTLAS-WNAMISGLAMHGKADKALSLFSRMI 428
            M     A    A++    +HG  +    +  ++I
Sbjct: 359 EMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVI 393


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 257/639 (40%), Positives = 382/639 (59%), Gaps = 48/639 (7%)

Query: 6   SSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFAL 65
           +SL      LH   SS         +  + LL  C +MQ++KQ+ +QI++TG H +   L
Sbjct: 13  TSLHFLSKPLHLSTSSH-----FTKKSCIFLLKNCKSMQHLKQIQTQILRTGFHQSGDTL 67

Query: 66  SKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG 125
           +K +  C     G+L YA  +F  I  P   I+N +I+  + + S   A+  + ++   G
Sbjct: 68  NKFMVCCTDPSIGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEG 127

Query: 126 FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR 185
             P+ +T+PF+ K+   +  + EG++++  V+K GLE D +V  SL++MYA+ G +++ R
Sbjct: 128 LSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLR 187

Query: 186 LVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH 245
            VF +   RD VS+  LI+GY      +DA  +F  M  ++ +  PNE+TVV+ LSAC  
Sbjct: 188 QVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQ-QQSSLRPNEATVVSTLSACIA 246

Query: 246 MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV-------------------- 285
           +  LELG  +   +    LG  + + NAL+DMY KCG L                     
Sbjct: 247 LKMLELGKEIHRYVREQ-LGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSM 305

Query: 286 -----------KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
                      +AR+LFE    RDV+ W  MI GY   + + +A+ LFR+M    + P+ 
Sbjct: 306 VSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDR 365

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
            T +++L  CA LG L+ GKWIH YID+N   ++ V + T+LI+MYAKCG I+ + ++F+
Sbjct: 366 FTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAV-VGTALIEMYAKCGFIEKSLEIFN 424

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
           G+  K  ASW ++I GLAM+GK  KAL LF+ M+  G++PDDITF+GVLSAC+H GL++ 
Sbjct: 425 GLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEE 484

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD------AAIWT 508
           GR++F +M   Y+I PKL+HYGC++DLLGRAG  DEAE L+   E  P+        ++ 
Sbjct: 485 GRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELI---EKSPNVNNEVIVPLYG 541

Query: 509 SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568
           +LL ACR HG +E+GE VAK L+ +E  +   + LL+N+YA A RW+DV  +R ++ D G
Sbjct: 542 ALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLG 601

Query: 569 MKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEI 607
           +KKVPGCSS+EV  +VHEFLVGD  HP+ + IY MLD I
Sbjct: 602 VKKVPGCSSVEVNGIVHEFLVGDASHPEMREIYSMLDSI 640



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 189/396 (47%), Gaps = 41/396 (10%)

Query: 259 IEGHGLGSNLHVTNALIDMYSKC------GDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
           I+   L +  H +   ++ +  C      G+L  A  +F  I+   +  +N++I  +T  
Sbjct: 51  IQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGLFIYNLVIKAFTKN 110

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
             +++A++LFRQ+ +  + P++ T+  V  A   LG +  G+ ++ ++ K+  + +   +
Sbjct: 111 GSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLEFDTY-V 169

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE-G 431
             SL+DMYA+ G ++   QVF+ M  + + SWN +ISG     + + A+ +F RM  +  
Sbjct: 170 CNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSS 229

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
           L+P++ T V  LSAC    +L++G++    + +    + K+ +   +VD+  + G    A
Sbjct: 230 LRPNEATVVSTLSACIALKMLELGKEIHRYVREQLGFTIKIGN--ALVDMYCKCGHLSIA 287

Query: 492 EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEP-ENPGAYVLLSNMYAG 550
             +   M +K     WTS++      G+L+     A+ L E  P  +   +  + N Y  
Sbjct: 288 REIFNDMPIKT-VICWTSMVSGYVNCGQLD----EARELFERSPVRDVVLWTAMINGYVQ 342

Query: 551 AGRWDDVATIRTRLNDKGMKK--------VPGCS---SIEVGSVVHEFLVGDKVHPQSKH 599
             R+DD   +   +  K +          + GC+   ++E G  +H ++  +K+      
Sbjct: 343 FNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKI------ 396

Query: 600 IYEMLDEI--DALLE---KSGFVPDTSEVLYDMDEE 630
              M+D +   AL+E   K GF+  + E+   + E+
Sbjct: 397 ---MIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEK 429


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 252/582 (43%), Positives = 359/582 (61%), Gaps = 4/582 (0%)

Query: 126 FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR 185
             P    +  +L+SC    AI  GKQ+HA V   G   D  + T L+N+Y     L SAR
Sbjct: 71  LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSAR 130

Query: 186 LVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH 245
           L+F++    +   +  LI GYA  G  + A QL+ +M   +   VP+  T   VL ACA 
Sbjct: 131 LLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQM--FDYGLVPDNFTFPFVLKACAA 188

Query: 246 MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVM 305
           + ++E G  +   +   G   ++ V  ALIDMY+KCG +  AR++F+ I  RD + WN M
Sbjct: 189 LSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSM 248

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365
           +  Y+        L L  +M+ + + P + T ++ + A A   AL  G+ +H  +    +
Sbjct: 249 LAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHG-LSWRQE 307

Query: 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
             ++  + T+L+DMYAKCG+++ A  +F+ +G K + SWNAMI+G AMHG A +AL LF 
Sbjct: 308 FESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFE 367

Query: 426 RMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485
            M     +PD ITFVGVLSAC+H GLL+ G  +F  MI+DYKI P +QHY CMVDLLG +
Sbjct: 368 EM-NRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHS 426

Query: 486 GLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545
           G  DEA  L+  M++ PD+ +W +LL +C++H  +ELGE   + L+ELEP++ G YV+LS
Sbjct: 427 GRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILS 486

Query: 546 NMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLD 605
           N+YA AG+W+ VA +R  + D+ +KK   CS IEV + VH FL GD  HP S  IY  L+
Sbjct: 487 NIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELE 546

Query: 606 EIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLR 665
            +  L++++G+ P T  V +D++++ K   +  HSE+LAIA+GLIST PGT + I KNLR
Sbjct: 547 RVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTRLLITKNLR 606

Query: 666 VCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +C +CH A K ISKI  REI  RD NR+HHFKDG CSC DYW
Sbjct: 607 ICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 648



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 142/416 (34%), Positives = 223/416 (53%), Gaps = 15/416 (3%)

Query: 35  ALLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           +LL  C   + IK   Q+H+Q+   G        +KL+ +  V     LS A L+F+ I 
Sbjct: 80  SLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVC--DSLSSARLLFDRIP 137

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           + N  +WN +IRG++ +     A++ Y +M   G VP+ +TFPF+LK+CA +SAI  G++
Sbjct: 138 KHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGRE 197

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IH HV++ G E D FV  +LI+MYA+ G + SAR VF+K  +RDAV + +++  Y+  G+
Sbjct: 198 IHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGH 257

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
            D    L  EM +      P E+T+VT +SA A   +L  G  +  L       S+  V 
Sbjct: 258 PDACLSLCSEMVL--TGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVK 315

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
            AL+DMY+KCG +  AR+LFE +  + V+SWN MI GY       EAL LF +M     +
Sbjct: 316 TALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEM-NRVAK 374

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+ +TF+ VL AC++ G L+ G      + ++++    V  +T ++D+    G +  A  
Sbjct: 375 PDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYN 434

Query: 392 VFDGMGYKTLAS---WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
           +   M  K L     W A+++   +H   +       R+I   L+PDD     +LS
Sbjct: 435 LI--MQMKVLPDSGVWGALLNSCKIHANVELGEIALERLI--ELEPDDAGNYVILS 486


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 233/482 (48%), Positives = 334/482 (69%), Gaps = 3/482 (0%)

Query: 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA 287
           + +P++++   +L +CA  G  +LG      I   G   ++ +   L+D Y+K G + +A
Sbjct: 25  DVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKHGYVEEA 84

Query: 288 RDLFESIEKRDV--ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
           R+LF+++ +R+   ++WN MI  Y    ++  A+ +F+QM   N++P +VT +S+L ACA
Sbjct: 85  RNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACA 144

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
           +LGALD+G+WIH YI     K++ V L  +LIDMY KCG ++AA  VF G+  K +  WN
Sbjct: 145 HLGALDMGEWIHGYIRTKRLKID-VVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWN 203

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
           ++I GL M+G+ ++A++ F  M  EG++PD +TFVG+LS C+H+GLL  G++YF+ M+  
Sbjct: 204 SIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGV 263

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
           Y + P ++HYGCMVDLLGRAG   EA  L++ M MKP++ +  SLL AC++H   +LGE 
Sbjct: 264 YGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQ 323

Query: 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVH 585
           V + LLEL+P + G YV LSN+YA   RWDDV T R  +  +G+ K PGCSSIEV ++VH
Sbjct: 324 VTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVH 383

Query: 586 EFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAI 645
           EF+ GD  HPQ   I   LDEI   L+  G VP+T+ VL+D++EE KEGA+ +HSE++A+
Sbjct: 384 EFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAV 443

Query: 646 AYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCND 705
           A+GL+ST PG TIR+VKNLR C +CHSA KLIS  F REII RDR RFHHF++G+CSCND
Sbjct: 444 AFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCND 503

Query: 706 YW 707
           YW
Sbjct: 504 YW 505



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 163/298 (54%), Gaps = 8/298 (2%)

Query: 115 IKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINM 174
           + FY  M+ +  +P+  +F  IL+SCA       G+  H  ++K+G E D  + T L++ 
Sbjct: 15  LGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDF 74

Query: 175 YAQNGELESARLVFNKSSLRDA--VSYTALITGYASRGYLDDARQLFDEMPIREENFVPN 232
           YA++G +E AR +F+  + R++  V++  +I+ Y   G    A  +F +M  + EN  P 
Sbjct: 75  YAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQM--QSENVKPT 132

Query: 233 ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFE 292
           E T+V++LSACAH+G+L++G W+   I    L  ++ + NALIDMY KCG L  A D+F 
Sbjct: 133 EVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFH 192

Query: 293 SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL 352
            + ++++  WN +I G       +EA+  F  M +  I+P+ VTF+ +L  C++ G L  
Sbjct: 193 GLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSA 252

Query: 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISG 410
           G+   + +   +     V  +  ++D+  + G +K A ++   M  K     N+M+ G
Sbjct: 253 GQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKP----NSMVLG 306



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 122/272 (44%), Gaps = 40/272 (14%)

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
           L  +  ML++++ P+  +F  +L +CA  G   LG+  H  I K   + + + L T L+D
Sbjct: 15  LGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMI-LQTGLLD 73

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLAS--WNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
            YAK G ++ A  +FD M  +   S  WN MIS     G+   A+S+F +M  E ++P +
Sbjct: 74  FYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTE 133

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL--------------- 481
           +T V +LSAC H G LD+G ++ +  I+  ++   +     ++D+               
Sbjct: 134 VTMVSLLSACAHLGALDMG-EWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFH 192

Query: 482 ----------------LGRAGLFDEAEALLKTME---MKPDAAIWTSLLGACRVHGRLEL 522
                           LG  G  +EA A    ME   +KPD   +  +L  C   G L  
Sbjct: 193 GLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSA 252

Query: 523 GESVAKHLLELEPENPGA--YVLLSNMYAGAG 552
           G+     +L +    PG   Y  + ++   AG
Sbjct: 253 GQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAG 284



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 126/273 (46%), Gaps = 7/273 (2%)

Query: 27  LLQNQPSLALLSKCTNMQNIKQV----HSQIIKTGLHNTQFALSKLIEICAVSPFGDLSY 82
           +L ++ S +L+ +   +    Q+    H QI+K G        + L++  A   + + + 
Sbjct: 26  VLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKHGYVEEAR 85

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
            L    T R  N V WN +I  +        AI  + +M      P   T   +L +CA 
Sbjct: 86  NLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAH 145

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
           + A+  G+ IH ++    L+ D  +  +LI+MY + G LE+A  VF+  S ++   + ++
Sbjct: 146 LGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSI 205

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG- 261
           I G    G  ++A   F  + + +E   P+  T V +LS C+H G L  G    S + G 
Sbjct: 206 IVGLGMNGRGEEAIAAF--IVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGV 263

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
           +GL   +     ++D+  + G L +A +L  ++
Sbjct: 264 YGLEPGVEHYGCMVDLLGRAGYLKEALELIRAM 296


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 256/680 (37%), Positives = 404/680 (59%), Gaps = 16/680 (2%)

Query: 35  ALLSKCT---NMQNIKQVHSQIIKTGL---HNTQFALSKLIEICAVSPFGDLSYALLVFE 88
           +LL+ C    ++Q  KQ+HS ++K G+   + T+ +L  L   C     GD+  A  +F 
Sbjct: 250 SLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKC-----GDIETAHDIFN 304

Query: 89  TIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE 148
                N V+WN ++  +   S    + + + +M  +G  PN +T+P IL++C     I  
Sbjct: 305 LGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIEL 364

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           G+QIH+  +K G ESD +V   LI+MY++   L+ AR +      RD VS+T++I GY  
Sbjct: 365 GEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQ 424

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
             + ++A   F EM  ++    P+   + +  SACA + ++  G  + + +   G  +++
Sbjct: 425 HDFCEEALATFKEM--QDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADI 482

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
            + N L+++Y++CG   +A  LF  I+ +D I+WN +I G+  +  Y++ALM+F +M Q+
Sbjct: 483 SIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQA 542

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAY-IDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
             + N  TF+S + A A L  +  GK +H   +   H     V+   +LI +Y KCG+I+
Sbjct: 543 GAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVA--NALISLYGKCGSIE 600

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
            A+ +F  M  +   SWN +I+  + HG+  +AL LF +M  EGL+P+D+TF+GVL+AC+
Sbjct: 601 DAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACS 660

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
           H GL++ G  YF +M   Y ++P   HY C+VD+LGRAG  D A   +  M +  +A IW
Sbjct: 661 HVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIW 720

Query: 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
            +LL AC+VH  +E+GE  AKHLLELEP +  +YVLLSN YA  G+W +   +R  + D+
Sbjct: 721 RTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDR 780

Query: 568 GMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
           G++K PG S IEV + VH F VGD++HP S  IY+ L E++  L K G+  +   + ++ 
Sbjct: 781 GIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEK 840

Query: 628 DEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIA 687
           ++E K+     HSEKLA+A+GL++  P   +R++KNLRVC +CHS  K  S++  REI+ 
Sbjct: 841 EQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKFTSEVTRREIVL 900

Query: 688 RDRNRFHHFKDGNCSCNDYW 707
           RD  RFHHF  G+CSC DYW
Sbjct: 901 RDVYRFHHFNSGSCSCGDYW 920



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 136/471 (28%), Positives = 236/471 (50%), Gaps = 17/471 (3%)

Query: 46  IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           + ++H+  +  GL   +   + LI++ A +  G +  A  VF+ +   + V W  ++ G+
Sbjct: 62  VLEIHATSVVRGLGADRLIGNLLIDLYAKN--GLVWQARQVFKELSSRDHVSWVAMLSGY 119

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
           +       A + Y +M  +  +P  Y    +L +C K    ++G+ IHA V K    S+ 
Sbjct: 120 AQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSET 179

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           FV  +LI +Y   G  + A  VF      D V++  LI+G+A  G+ + A Q+FDEM + 
Sbjct: 180 FVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQL- 238

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
                P+  TV ++L+ACA +G L+ G  + S +   G+  +     +L+D+Y KCGD+ 
Sbjct: 239 -SGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIE 297

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
            A D+F   ++ +V+ WN+M+  Y   SD  ++  +F QM  + I PN  T+  +L  C 
Sbjct: 298 TAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCT 357

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
             G ++LG+ IH+   KN  + +++ +   LIDMY+K   +  A ++ + +  + + SW 
Sbjct: 358 CTGQIELGEQIHSLSIKNGFE-SDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWT 416

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN-----HAGLLDIGRQYFN 460
           +MI+G   H   ++AL+ F  M   G+ PD+I      SAC        GL    R Y +
Sbjct: 417 SMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVS 476

Query: 461 AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
               D  I      +  +V+L  R G  +EA +L + ++ K D   W  L+
Sbjct: 477 GYAADISI------WNTLVNLYARCGRSEEAFSLFREIDHK-DEITWNGLI 520



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 96/228 (42%), Gaps = 37/228 (16%)

Query: 25  YKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYAL 84
           Y +     +++ L+   +++  KQVH + +KTG H ++  ++  + I      G +  A 
Sbjct: 546 YNVFTFISAISALANLADIKQGKQVHGRAVKTG-HTSETEVANAL-ISLYGKCGSIEDAK 603

Query: 85  LVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS 144
           ++F  +   N+V WN II   S     + A+  + +M   G  PN  TF  +L +C+ + 
Sbjct: 604 MIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVG 663

Query: 145 AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
            + EG                    S+ N+Y  N              + D  +    I 
Sbjct: 664 LVEEGLS---------------YFKSMSNVYGLN-------------PIPDHYACVVDIL 695

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
           G A  G LD AR+  DEMPI       N     T+LSAC    ++E+G
Sbjct: 696 GRA--GQLDRARRFVDEMPI-----TANAMIWRTLLSACKVHKNIEIG 736


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 255/633 (40%), Positives = 389/633 (61%), Gaps = 12/633 (1%)

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           A  VF+ + E N V W  +I        P  AI+F++ M+LSGF  + +T   +  +CA+
Sbjct: 222 AYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAE 281

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ---NGELESARLVFNKSSLRDAVSY 199
           +  +S GKQ+H+  ++ GL  D  V  SL++MYA+   +G ++  R VF++      +S+
Sbjct: 282 LENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSW 339

Query: 200 TALITGYASRGYL-DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           TALITGY     L  +A  LF EM I + +  PN  T  +   AC ++    +G  V   
Sbjct: 340 TALITGYMKNCNLATEAINLFSEM-ITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQ 398

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
               GL SN  V N++I M+ K   +  A+  FES+ +++++S+N  + G     ++++A
Sbjct: 399 AFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQA 458

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
             L  ++ +  +  +  TF S+L   A +G++  G+ IH+ + K     N   +  +LI 
Sbjct: 459 FKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQ-PVCNALIS 517

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
           MY+KCG+I  A +VF+ M  + + SW +MI+G A HG A + L  F++MI EG++P+++T
Sbjct: 518 MYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVT 577

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
           +V +LSAC+H GL+  G ++FN+M +D+KI PK++HY CMVDLL RAGL  +A   + TM
Sbjct: 578 YVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTM 637

Query: 499 EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVA 558
             + D  +W + LGACRVH   ELG+  A+ +LEL+P  P AY+ LSN+YA AG+W++  
Sbjct: 638 PFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEEST 697

Query: 559 TIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVP 618
            +R ++ ++ + K  GCS IEVG  +H+F VGD  HP +  IY+ LD +   +++ G+VP
Sbjct: 698 EMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVP 757

Query: 619 DTSEVLYDMDEEWKEGA----LSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSAT 674
           DT  VL+ ++EE  E      L  HSEK+A+A+GLIST     +R+ KNLRVCG+CH+A 
Sbjct: 758 DTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAM 817

Query: 675 KLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           K IS +  REI+ RD NRFHHFKDG CSCNDYW
Sbjct: 818 KYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 175/695 (25%), Positives = 311/695 (44%), Gaps = 73/695 (10%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           +LL  C   ++    K VH+++I+  +       + LI +   S  GD + A  VFET+R
Sbjct: 67  SLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISL--YSKSGDSAKAEDVFETMR 124

Query: 92  ---EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE 148
              + + V W+ ++  +  +   + AIK +V  +  G VPN Y +  ++++C+    +  
Sbjct: 125 RFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGV 184

Query: 149 GKQIHAHVLKLG-LESDPFVHTSLINMYAQ-NGELESARLVFNKSSLRDAVSYTALITGY 206
           G+     ++K G  ESD  V  SLI+M+ +     E+A  VF+K S  + V++T +IT  
Sbjct: 185 GRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRC 244

Query: 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS 266
              G+  +A + F +M +    F  ++ T+ +V SACA + +L LG  + S     GL  
Sbjct: 245 MQMGFPREAIRFFLDMVL--SGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVD 302

Query: 267 NLHVTNALIDMYSKC---GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY-KEALMLF 322
           ++  +  L+DMY+KC   G +   R +F+ +E   V+SW  +I GY    +   EA+ LF
Sbjct: 303 DVECS--LVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLF 360

Query: 323 RQML-QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381
            +M+ Q ++EPN  TF S   AC  L    +GK +     K     +N S+  S+I M+ 
Sbjct: 361 SEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLA-SNSSVANSVISMFV 419

Query: 382 KCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVG 441
           K   ++ A++ F+ +  K L S+N  + G   +   ++A  L S +    L     TF  
Sbjct: 420 KSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFAS 479

Query: 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK 501
           +LS   + G +  G Q  + +++   +S        ++ +  + G  D A  +   ME +
Sbjct: 480 LLSGVANVGSIRKGEQIHSQVVK-LGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENR 538

Query: 502 PDAAIWTSLLGACRVHG-RLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATI 560
            +   WTS++     HG  + + E+  + + E    N   YV + +  +  G        
Sbjct: 539 -NVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVG-------- 589

Query: 561 RTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDT 620
              L  +G +              +      K+ P+ +H   M+D    LL ++G + D 
Sbjct: 590 ---LVSEGWRH------------FNSMYEDHKIKPKMEHYACMVD----LLCRAGLLTDA 630

Query: 621 SEVLYDMDEE-----WKE--GALSHHSE----KLAIA--YGLISTKPGTTIRIVKNLRVC 667
            E +  M  +     W+   GA   HS     KLA      L   +P   I++       
Sbjct: 631 FEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACA 690

Query: 668 GNCHSATKLISKIFNREIIARDRNRFHHFKDGNCS 702
           G    +T++  K+  R ++          K+G CS
Sbjct: 691 GKWEESTEMRRKMKERNLV----------KEGGCS 715



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 140/515 (27%), Positives = 241/515 (46%), Gaps = 55/515 (10%)

Query: 121 MILSGFVP-NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNG 179
           M   G  P ++ TF  +LKSC +      GK +HA +++  +E D  ++ SLI++Y+++G
Sbjct: 52  MARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSG 111

Query: 180 ELESARLVF---NKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTV 236
           +   A  VF    +   RD VS++A++  Y + G   DA ++F E    E   VPN+   
Sbjct: 112 DSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFL--ELGLVPNDYCY 169

Query: 237 VTVLSACAHMGSLELGNWVCSLIEGHG-LGSNLHVTNALIDMYSKCGD-LVKARDLFESI 294
             V+ AC++   + +G      +   G   S++ V  +LIDM+ K  +    A  +F+ +
Sbjct: 170 TAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKM 229

Query: 295 EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGK 354
            + +V++W +MI         +EA+  F  M+ S  E +  T  SV  ACA L  L LGK
Sbjct: 230 SELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGK 289

Query: 355 WIHAYIDKNHQKLNNVSLWTSLIDMYAKC---GNIKAAEQVFDGMGYKTLASWNAMISGL 411
            +H++  ++   +++V    SL+DMYAKC   G++    +VFD M   ++ SW A+I+G 
Sbjct: 290 QLHSWAIRSGL-VDDVE--CSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGY 346

Query: 412 AMHGK-ADKALSLFSRMIGEG-LQPDDITFVGVLSACNHAGLLDIGRQYF---------- 459
             +   A +A++LFS MI +G ++P+  TF     AC +     +G+Q            
Sbjct: 347 MKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLAS 406

Query: 460 -----NAMIQDYKISPKLQ---------------HYGCMVDLLGRAGLFDEAEALLKTM- 498
                N++I  +  S +++                Y   +D   R   F++A  LL  + 
Sbjct: 407 NSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEIT 466

Query: 499 --EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE--LEPENPGAYVLLSNMYAGAGRW 554
             E+   A  + SLL      G +  GE +   +++  L    P    L+S MY+  G  
Sbjct: 467 ERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALIS-MYSKCGSI 525

Query: 555 DDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLV 589
           D  + +    N    + V   +S+  G   H F +
Sbjct: 526 DTASRV---FNFMENRNVISWTSMITGFAKHGFAI 557



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 148/320 (46%), Gaps = 18/320 (5%)

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNES-TVVTVLSACAHMGSLELGNWVCSLIE 260
           LI  + + G L  A    D M    +   P +S T  ++L +C       LG  V + + 
Sbjct: 32  LILRHLNAGDLRGAVSALDLMA--RDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLI 89

Query: 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE---KRDVISWNVMIGGYTHTSDYKE 317
              +  +  + N+LI +YSK GD  KA D+FE++    KRDV+SW+ M+  Y +     +
Sbjct: 90  EFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELD 149

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           A+ +F + L+  + PND  + +V+ AC+    + +G+    ++ K     ++V +  SLI
Sbjct: 150 AIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLI 209

Query: 378 DMYAKCGN-IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           DM+ K  N  + A +VFD M    + +W  MI+     G   +A+  F  M+  G + D 
Sbjct: 210 DMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDK 269

Query: 437 ITFVGVLSACNHAGLLDIGRQYF-----NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
            T   V SAC     L +G+Q       + ++ D + S    +  C  D     G  D+ 
Sbjct: 270 FTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSAD-----GSVDDC 324

Query: 492 EALLKTMEMKPDAAIWTSLL 511
             +   ME       WT+L+
Sbjct: 325 RKVFDRME-DHSVMSWTALI 343


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 249/593 (41%), Positives = 375/593 (63%), Gaps = 24/593 (4%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           F  +L++C   + I     I+A +++     DPFV   L+ + +    +  A  +F+ + 
Sbjct: 35  FISLLQNCKHNNQIP---PIYAKIIRNHHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQ 91

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
             +   YTALI G     Y  D   L+ +M     + VP+   V +VL AC    +L+ G
Sbjct: 92  NPNVYLYTALIDGLVLSCYYTDGIHLYYQMI--NSSLVPDSYAVTSVLKACGCHLALKEG 149

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVIS----------- 301
             V S +   GL SN  +   LI++Y KCG    AR +F+ + +RDV++           
Sbjct: 150 REVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDH 209

Query: 302 -------WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGK 354
                  W  MI G     +   AL +FR M + ++ PN+VT + VL AC+ LGAL LG+
Sbjct: 210 GIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGR 269

Query: 355 WIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMH 414
           W+ +Y+DK+  +LN+  +  +LI+MY++CG+I  A++VF+ M  K + ++N+MI G A+H
Sbjct: 270 WVRSYMDKHRIELNHF-VGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALH 328

Query: 415 GKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQH 474
           GK+ +A+ LF  +I +G  P  +TFVGVL+AC+H GL ++G + F++M +DY I P+++H
Sbjct: 329 GKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEH 388

Query: 475 YGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534
           YGCMVDLLGR G  +EA + ++ M++ PD  +  +LL AC++HG LEL E VAK L+  +
Sbjct: 389 YGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVACK 448

Query: 535 PENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVH 594
             + G Y+LLSN Y+ +G+W + A +RT + ++G++K PGCSSIEV + +HEFL+GD  H
Sbjct: 449 NADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNEIHEFLLGDLRH 508

Query: 595 PQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKP 654
           PQ + IY+ L+E++ +L   G+ P T  VL+D+++  KE AL+ HSE+LAI YGLISTKP
Sbjct: 509 PQKEKIYKKLEELNQILRLEGYTPATEVVLHDIEKSEKEWALAIHSERLAICYGLISTKP 568

Query: 655 GTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            TT+R+VKNLRVC +CH   KLIS I  R+I+ RDRNRFHHF++G CSC DYW
Sbjct: 569 LTTLRVVKNLRVCNDCHLTIKLISNITRRKIVVRDRNRFHHFENGVCSCGDYW 621



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 135/438 (30%), Positives = 229/438 (52%), Gaps = 35/438 (7%)

Query: 2   ALPPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNT 61
           ALPP+S T         P + P     + +  ++LL  C +   I  ++++II+   H  
Sbjct: 16  ALPPNSGT--------KPKNTPN----RRRHFISLLQNCKHNNQIPPIYAKIIRNHHHQD 63

Query: 62  QFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRM 121
            F + +L+ +C  S    + YA  +F   + PN  ++  +I G  LS      I  Y +M
Sbjct: 64  PFVVFELLRVC--SNLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQM 121

Query: 122 ILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGEL 181
           I S  VP++Y    +LK+C    A+ EG+++H+ VLKLGL S+  +   LI +Y + G  
Sbjct: 122 INSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAF 181

Query: 182 ESARLVFNK------------------SSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
           E AR VF++                    ++D V +TA+I G    G  + A ++F  M 
Sbjct: 182 EDARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNM- 240

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
            + E+ +PNE T+V VLSAC+ +G+L+LG WV S ++ H +  N  V  ALI+MYS+CGD
Sbjct: 241 -QREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGD 299

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           + +A+ +FE +++++VI++N MI G+       EA+ LFR +++    P+ VTF+ VL A
Sbjct: 300 IDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNA 359

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLA 402
           C++ G  +LG  I   + K++     +  +  ++D+  + G ++ A      M       
Sbjct: 360 CSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHV 419

Query: 403 SWNAMISGLAMHGKADKA 420
              A++S   +HG  + A
Sbjct: 420 MLGALLSACKIHGNLELA 437


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 275/740 (37%), Positives = 418/740 (56%), Gaps = 72/740 (9%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ALL  C    N    K +HS IIKT  +   F L+ LI   + +  G + YA  VF+ + 
Sbjct: 14  ALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLIS--SYAKLGSIPYACKVFDQMP 71

Query: 92  EPN-------------------------------QVIWNNIIRGHSLSSSPVVAIKFYVR 120
            PN                                V WN++I G++       ++K Y  
Sbjct: 72  HPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNL 131

Query: 121 MILS--GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN 178
           M+ +   F  N  TF  +L   +K   +  G+QIH HV+K G  S  FV + L++MY++ 
Sbjct: 132 MLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKM 191

Query: 179 GELESARLVFNK---------SSL----------------------RDAVSYTALITGYA 207
           G +  AR VF++         ++L                      RD++S+T++ITG+ 
Sbjct: 192 GMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFT 251

Query: 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
             G   DA  +F EM +  EN   ++ T  +VL+AC  + +L+ G  V + I       N
Sbjct: 252 QNGLDRDAIDIFREMKL--ENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDN 309

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
           + V +AL+DMY KC ++  A  +F+ +  ++V+SW  M+ GY      +EA+  F  M +
Sbjct: 310 IFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQK 369

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
             IEP+D T  SV+ +CA L +L+ G   HA        ++ +++  +L+ +Y KCG+I+
Sbjct: 370 YGIEPDDFTLGSVISSCANLASLEEGAQFHARA-LTSGLISFITVSNALVTLYGKCGSIE 428

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
            + ++F+ + +K   +W A++SG A  GKA++ + LF  M+  GL+PD +TF+GVLSAC+
Sbjct: 429 DSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACS 488

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
            AGL++ G Q F +MI ++ I P   HY CM+DL  RAG  +EA   +  M   PDA  W
Sbjct: 489 RAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISW 548

Query: 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
            +LL +CR +G +++G+  A+ L+EL+P N  +YVLLS++YA  G+W++VA +R  + DK
Sbjct: 549 ATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDK 608

Query: 568 GMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
           G++K PGCS I+  + VH F   DK +P S  IY  L++++  + K G+VPD + VL+D+
Sbjct: 609 GLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGYVPDMNSVLHDV 668

Query: 628 DEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIA 687
            +  K   L+HHSEKLAIA+GL+   PG  IR+VKNLRVC +CH+ATK ISKI NREI+ 
Sbjct: 669 GDSEKIKMLNHHSEKLAIAFGLLFIPPGLPIRVVKNLRVCSDCHNATKYISKITNREILV 728

Query: 688 RDRNRFHHFKDGNCSCNDYW 707
           RD  RFH FKDG CSC D+W
Sbjct: 729 RDTARFHLFKDGTCSCGDFW 748


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 271/728 (37%), Positives = 409/728 (56%), Gaps = 71/728 (9%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSL 107
           Q H++I+K+G  N  +  +KLI   + S +   + A L+ ++I +P    ++++I   + 
Sbjct: 36  QAHARILKSGAQNDGYISAKLIA--SYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTK 93

Query: 108 SSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFV 167
           +     +I  + RM   G +P+T+  P + K CA++SA   GKQIH      GL+ D FV
Sbjct: 94  AKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFV 153

Query: 168 HTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM----- 222
             SL +MY + G +  AR VF++ S +D V+ +AL+ GYA +G L++  ++  EM     
Sbjct: 154 QGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGI 213

Query: 223 ----------------------------PIREENFVPNESTVVTVLSACAHMGSLELGNW 254
                                        +    F P++ TV +VL +     +L +G  
Sbjct: 214 EPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQ 273

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCG---DLVKARDLFESIE---------------- 295
           +   +   GL  +  V +A++DMY K G    ++K  D FE +E                
Sbjct: 274 IHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGL 333

Query: 296 ----------------KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS 339
                           + +V+SW  +I G        EAL LFR+M  + ++PN VT  S
Sbjct: 334 VDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPS 393

Query: 340 VLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK 399
           +LPAC  + AL  G+  H +  + H  L++V + ++LIDMYAKCG IK ++ VF+ M  K
Sbjct: 394 MLPACGNIAALGHGRSTHGFAVRVHL-LDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTK 452

Query: 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF 459
            L  WN++++G +MHGKA + +S+F  ++   L+PD I+F  +LSAC   GL D G +YF
Sbjct: 453 NLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYF 512

Query: 460 NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
           N M ++Y I P+L+HY CMV+LLGRAG   EA  L+K +  +PD+ +W +LL +CR+   
Sbjct: 513 NMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNN 572

Query: 520 LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIE 579
           ++L E  A+ L  LEPENPG YVL+SN+YA  G W +V +IR ++   G+KK PGCS I+
Sbjct: 573 VDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQ 632

Query: 580 VGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHH 639
           V + V+  L  DK HPQ   I E +DEI   + KSG  P+    L D++E+ +E  L  H
Sbjct: 633 VKNKVYTLLACDKSHPQIDQITEKMDEISEEMRKSGHRPNLDFALQDVEEQEQEQMLWGH 692

Query: 640 SEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDG 699
           SEKLA+ +GL++T  GT ++++KNLR+CG+CH+  K IS    REI  RD NRFHHFKDG
Sbjct: 693 SEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDG 752

Query: 700 NCSCNDYW 707
            CSC D+W
Sbjct: 753 ICSCGDFW 760


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 256/631 (40%), Positives = 386/631 (61%), Gaps = 3/631 (0%)

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
           F  ++ A  VF+ + E + V+WN ++ G   +S    AI  +  M+  G   ++ T   +
Sbjct: 154 FSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAV 213

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L   A++  ++ G  I    +K+G  S  +V T L  +Y++ GE+E+ARL+F +    D 
Sbjct: 214 LPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDL 273

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           VSY A+I+GY      + + +LF E+ +  E    N S++V ++      G L L   + 
Sbjct: 274 VSYNAMISGYTCNNETESSVRLFKELLVSGEKV--NSSSIVGLIPVFFPFGHLHLTRCIH 331

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
                 G+ SN  V+ AL  +YS+  ++  AR LF+   ++ + SWN MI GY      +
Sbjct: 332 GFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTE 391

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           +A+ LF++M +  + PN VT  S+L ACA LGAL LGKW+H  I++   + +N+ + T+L
Sbjct: 392 KAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFE-SNIFVSTAL 450

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           IDMYAKCG+I  A+++F  M  K   +WNAMISG  +HG   +AL+LF+ M+   + P  
Sbjct: 451 IDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTG 510

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
           +TF+ VL AC+HAGL+  G + F +M+ D+   P  +HY CMVDLLGRAG  D+A   ++
Sbjct: 511 VTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIR 570

Query: 497 TMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
            M ++P   +W +LLGAC +H    L    +  L EL+P+N G YVLLSN+Y+    + +
Sbjct: 571 KMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPE 630

Query: 557 VATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGF 616
            A++R  +  + + K PGC+ IEV + +H F  GD+ HPQ+  IY ML+++   + ++GF
Sbjct: 631 AASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGF 690

Query: 617 VPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKL 676
             +T   L+D++EE KE  +  HSEKLAIA+GLI+++PGT IRI+KNLRVC +CH+ATK 
Sbjct: 691 QTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSEPGTEIRIIKNLRVCLDCHNATKF 750

Query: 677 ISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           ISKI  R I+ RD NRFHHFKDG CSC DYW
Sbjct: 751 ISKITERVIVVRDANRFHHFKDGICSCGDYW 781



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 156/545 (28%), Positives = 271/545 (49%), Gaps = 17/545 (3%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L L+++ + +  + Q H+QII  GLHN    ++KL     +S    +  A L+F TI  P
Sbjct: 14  LTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTH--KLSHLKAIDQASLLFSTIPNP 71

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG-FVPNTYTFPFILKSCAKISAISEGKQI 152
           +  ++N +IR  SL++SP  A+  Y  +  S    P+ +T+ F++   + +         
Sbjct: 72  DLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAH 131

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
               +  G  SD FV ++++  Y +   + +AR VF+    RD V +  +++G       
Sbjct: 132 S---IVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCF 188

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           D+A  +F +M      F  + +TV  VL   A +  L LG  +  L    G  S+ +V  
Sbjct: 189 DEAILIFGDMVKGGIGF--DSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVIT 246

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            L  +YSKCG++  AR LF  I + D++S+N MI GYT  ++ + ++ LF+++L S  + 
Sbjct: 247 GLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKV 306

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N  + + ++P     G L L + IH +  K+    N+    T+L  +Y++   I++A  +
Sbjct: 307 NSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVS-TALTTVYSRLNEIESARLL 365

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           FD    K+LASWNAMISG A +G  +KA+SLF  M    ++P+ +T   +LSAC   G L
Sbjct: 366 FDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGAL 425

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
            +G+ + + +I        +     ++D+  + G   EA+ L   M  K +A  W +++ 
Sbjct: 426 SLGK-WVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEK-NAVTWNAMIS 483

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY----AGAGRWDDVATIRTRLNDKG 568
              +HG      ++   +L     +P     LS +Y    AG  R  D    R+ ++D G
Sbjct: 484 GYGLHGYGHEALNLFNEMLH-SRVSPTGVTFLSVLYACSHAGLVREGD-EIFRSMVHDHG 541

Query: 569 MKKVP 573
            + +P
Sbjct: 542 FEPLP 546


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 245/584 (41%), Positives = 380/584 (65%), Gaps = 8/584 (1%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P+   +  +LK C  +  + +GK +H H++     +D  +  S++ MYA+ G LE AR V
Sbjct: 89  PDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQV 148

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQ---LFDEMPIREENFVPNESTVVTVLSACA 244
           F++  ++D V++T++ITGY+  GY   A     LF EM +R+    PNE  + +++  C 
Sbjct: 149 FDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEM-VRD-GLRPNEFALSSLVKCCG 206

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
            +GS   G  +      +G   N+ V ++L+DMY++CG+L ++R +F+ +E ++ +SWN 
Sbjct: 207 FLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNA 266

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           +I G+    + +EAL LF +M +      + T+ ++L + +  G+L+ GKW+HA++ K+ 
Sbjct: 267 LISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSG 326

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF 424
           +KL    +  +L+ MYAK GNI  A++VFD +    + S N+M+ G A HG   +A+ LF
Sbjct: 327 KKLVGY-VGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELF 385

Query: 425 SRM-IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLG 483
             M +   ++P+DITF+ VL+AC+HAGLLD G  YF  M + Y + PKL HY  +VDL G
Sbjct: 386 EEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELM-KKYGLEPKLSHYTTVVDLFG 444

Query: 484 RAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVL 543
           RAGL D+A++ ++ M ++P+A IW +LLGA ++H   E+G   A+ +LEL+P  PGA+ L
Sbjct: 445 RAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTL 504

Query: 544 LSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEM 603
           LSN+YA AG+W DVA +R  + D G+KK P CS +E+ + VH F   D  HPQ   +YEM
Sbjct: 505 LSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSANDISHPQKNKVYEM 564

Query: 604 LDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKN 663
            + ++  +++ G+VPDTS V   +D++ KE  L +HSEKLA+A+ L++TKPG+ IRI+KN
Sbjct: 565 WENLNQKIKEIGYVPDTSHVHVFVDQQEKELNLQYHSEKLALAFALLNTKPGSVIRIMKN 624

Query: 664 LRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +RVCG+CHSA K +S +  REII RD NRFHHF+DG+CSC DYW
Sbjct: 625 IRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFRDGSCSCRDYW 668



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 128/391 (32%), Positives = 217/391 (55%), Gaps = 13/391 (3%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIE---ICAVSPFGDLSYALLVFETIRE 92
           LL +CT +  +KQ   +++ T L N++F    +I+   +   +  G L  A  VF+ +  
Sbjct: 97  LLKRCTMLGKLKQ--GKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMCV 154

Query: 93  PNQVIWNNIIRGHS---LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG 149
            + V W ++I G+S    +SS   A+  ++ M+  G  PN +    ++K C  + +  +G
Sbjct: 155 KDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDG 214

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           KQIH    K G + + FV +SL++MYA+ GEL  +RLVF++   ++ VS+ ALI+G+A +
Sbjct: 215 KQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFARK 274

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
           G  ++A  LF +M  + E F   E T   +L + +  GSLE G W+ + +   G     +
Sbjct: 275 GEGEEALGLFVKM--QREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGY 332

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ-MLQS 328
           V N L+ MY+K G++  A+ +F+ + K DV+S N M+ GY      KEA+ LF + ML  
Sbjct: 333 VGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWV 392

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            IEPND+TFLSVL AC++ G LD G +    + K +     +S +T+++D++ + G +  
Sbjct: 393 EIEPNDITFLSVLTACSHAGLLDEGLYYFELM-KKYGLEPKLSHYTTVVDLFGRAGLLDQ 451

Query: 389 AEQVFDGMGYKTLAS-WNAMISGLAMHGKAD 418
           A+   + M  +  A+ W A++    MH   +
Sbjct: 452 AKSFIEEMPIEPNATIWGALLGASKMHKNTE 482



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 153/288 (53%), Gaps = 10/288 (3%)

Query: 27  LLQNQPSLALLSKCTNM----QNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSY 82
           L  N+ +L+ L KC        + KQ+H    K G     F  S L+++ A    G+L  
Sbjct: 191 LRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARC--GELRE 248

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           + LVF+ +   N+V WN +I G +       A+  +V+M   GF    +T+  +L S + 
Sbjct: 249 SRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSST 308

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
             ++ +GK +HAH++K G +   +V  +L++MYA++G +  A+ VF++    D VS  ++
Sbjct: 309 TGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSM 368

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
           + GYA  G   +A +LF+EM +  E   PN+ T ++VL+AC+H G L+ G +   L++ +
Sbjct: 369 LIGYAQHGLGKEAVELFEEMMLWVE-IEPNDITFLSVLTACSHAGLLDEGLYYFELMKKY 427

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFES--IEKRDVISWNVMIGG 308
           GL   L     ++D++ + G L +A+   E   IE    I W  ++G 
Sbjct: 428 GLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATI-WGALLGA 474


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 263/677 (38%), Positives = 396/677 (58%), Gaps = 45/677 (6%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L+LL+ C N++ + Q+H   IK G+    +   KLI  CA+S    L YA  +     EP
Sbjct: 1   LSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEP 60

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQI 152
           +  ++N ++RG+S S  P  ++  +V M+  GFV P++++F F++K+     ++  G Q+
Sbjct: 61  DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM 120

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H   LK GLES  FV T+LI MY   G +E AR VF++    + V++ A+IT       +
Sbjct: 121 HCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDV 180

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
             AR++FD+M +R                           +W                 N
Sbjct: 181 AGAREIFDKMLVRNHT------------------------SW-----------------N 199

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            ++  Y K G+L  A+ +F  +  RD +SW+ MI G  H   + E+ + FR++ ++ + P
Sbjct: 200 VMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSP 259

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N+V+   VL AC+  G+ + GK +H +++K       VS+  +LIDMY++CGN+  A  V
Sbjct: 260 NEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWI-VSVNNALIDMYSRCGNVPMARLV 318

Query: 393 FDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           F+GM  K  + SW +MI+GLAMHG+ ++A+ LF+ M   G+ PD I+F+ +L AC+HAGL
Sbjct: 319 FEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGL 378

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           ++ G  YF+ M + Y I P+++HYGCMVDL GR+G   +A   +  M + P A +W +LL
Sbjct: 379 IEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLL 438

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
           GAC  HG +EL E V + L EL+P N G  VLLSN YA AG+W DVA+IR  +  + +KK
Sbjct: 439 GACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKK 498

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEID-ALLEKSGFVPDTSEVLYDMDEE 630
               S +EVG  +++F  G+K        +E L EI   L +++G+ P+ +  LYD++EE
Sbjct: 499 TTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASALYDVEEE 558

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KE  +S HSEKLA+A+ L     G  IRIVKNLR+C +CH+  KL SK++  EI+ RDR
Sbjct: 559 EKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDR 618

Query: 691 NRFHHFKDGNCSCNDYW 707
           NRFH FKDG+CSC DYW
Sbjct: 619 NRFHSFKDGSCSCRDYW 635


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 257/678 (37%), Positives = 403/678 (59%), Gaps = 9/678 (1%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +L  C+ ++     +++H  I +  L +  +  + L++  A    G L  A  VF+ + +
Sbjct: 125 VLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYA--KCGCLDDAKEVFDKMHK 182

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V WN++I G SL       +   +  + +   PN+ T   +L + A+++++  GK+I
Sbjct: 183 RDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEI 242

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL-RDAVSYTALITGYASRGY 211
           H   ++ G   D  V T ++++Y +   ++ AR +F+   + ++ V+++A++  Y    +
Sbjct: 243 HGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDF 302

Query: 212 LDDARQLFDEM-PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
           + +A +LF ++  ++++  V +  T+ TV+  CA++  L  G  +       G   +L V
Sbjct: 303 MREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMV 362

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            N L+ MY+KCG +  A   F  ++ RD +S+  +I GY    + +E L +F +M  S I
Sbjct: 363 GNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGI 422

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
            P   T  SVLPACA+L  L  G   H Y        + + +  +LIDMYAKCG I  A 
Sbjct: 423 NPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTM-ICNALIDMYAKCGKIDTAR 481

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           +VFD M  + + SWN MI    +HG   +AL LF  M  EGL+PDD+TF+ ++SAC+H+G
Sbjct: 482 KVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSG 541

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L+  G+ +FNAM QD+ I P+++HY CMVDLL RAGLF E  + ++ M ++PD  +W +L
Sbjct: 542 LVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGAL 601

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           L ACRV+  +ELGE V+K + +L PE+ G +VLLSNMY+  GRWDD A +R    ++G +
Sbjct: 602 LSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFE 661

Query: 571 KVPGCSSIEVGSVVHEFLVGD-KVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE 629
           K PGCS IE+  VVH FL G  + HPQ   I   LDE+   +++ G+  ++S V  D++E
Sbjct: 662 KSPGCSWIEISGVVHTFLGGGYRSHPQLTQISNKLDELLVEMKRLGYQAESSYVFQDVEE 721

Query: 630 EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
           E KE  L +HSEKLAIA+G++S  P   I + KNLRVCG+CH+A K IS +  R+I  RD
Sbjct: 722 EEKERVLLYHSEKLAIAFGILSLSPDKHIIVTKNLRVCGDCHTAIKFISLVTKRDITVRD 781

Query: 690 RNRFHHFKDGNCSCNDYW 707
            +RFHHFKDG C+C D+W
Sbjct: 782 ASRFHHFKDGICNCGDFW 799



 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 152/502 (30%), Positives = 257/502 (51%), Gaps = 27/502 (5%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIK-------TGLHNTQFALSKLIEICAVSPFGDLSYAL 84
            LL  C   +++   K +H  ++K       T L N      KL+++       +L  A 
Sbjct: 14  VLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACS--ELKIAR 71

Query: 85  LVFETI--REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
            VF+ +  R  N V+WN +IR ++ +     AI  Y +M+  G  PN +TFPF+LK+C+ 
Sbjct: 72  HVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSA 131

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
           +   SEG++IH  + +L LES+ +V T+L++ YA+ G L+ A+ VF+K   RD V++ ++
Sbjct: 132 LKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSM 191

Query: 203 ITGYA-SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
           I+G++   G  D+  +L  +M   + +  PN ST+V VL A A + SL  G  +      
Sbjct: 192 ISGFSLHEGSYDEVARLLVQM---QNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVR 248

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALM 320
            G   ++ V   ++D+Y KC  +  AR +F+ +   ++ ++W+ M+G Y      +EAL 
Sbjct: 249 RGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALE 308

Query: 321 LFRQMLQSN---IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           LF Q+L      I  + VT  +V+  CA L  L  G  +H Y  K+   L ++ +  +L+
Sbjct: 309 LFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVL-DLMVGNTLL 367

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI 437
            MYAKCG I  A + F+ M  +   S+ A+ISG   +G +++ L +F  M   G+ P+  
Sbjct: 368 SMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKA 427

Query: 438 TFVGVLSACNHAGLLDIGR-QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
           T   VL AC H   L  G   +  A+I  +     + +   ++D+  + G  D A  +  
Sbjct: 428 TLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICN--ALIDMYAKCGKIDTARKVFD 485

Query: 497 TMEMKPDAAIWTSLLGACRVHG 518
            M  K     W +++ A  +HG
Sbjct: 486 RMH-KRGIVSWNTMIIAYGIHG 506


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 263/677 (38%), Positives = 396/677 (58%), Gaps = 45/677 (6%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L+LL+ C N++ + Q+H   IK G+    +   KLI  CA+S    L YA  +     EP
Sbjct: 9   LSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEP 68

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQI 152
           +  ++N ++RG+S S  P  ++  +V M+  GFV P++++F F++K+     ++  G Q+
Sbjct: 69  DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM 128

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H   LK GLES  FV T+LI MY   G +E AR VF++    + V++ A+IT       +
Sbjct: 129 HCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDV 188

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
             AR++FD+M +R                           +W                 N
Sbjct: 189 AGAREIFDKMLVRNHT------------------------SW-----------------N 207

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            ++  Y K G+L  A+ +F  +  RD +SW+ MI G  H   + E+ + FR++ ++ + P
Sbjct: 208 VMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSP 267

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N+V+   VL AC+  G+ + GK +H +++K       VS+  +LIDMY++CGN+  A  V
Sbjct: 268 NEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWI-VSVNNALIDMYSRCGNVPMARLV 326

Query: 393 FDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           F+GM  K  + SW +MI+GLAMHG+ ++A+ LF+ M   G+ PD I+F+ +L AC+HAGL
Sbjct: 327 FEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGL 386

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           ++ G  YF+ M + Y I P+++HYGCMVDL GR+G   +A   +  M + P A +W +LL
Sbjct: 387 IEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLL 446

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
           GAC  HG +EL E V + L EL+P N G  VLLSN YA AG+W DVA+IR  +  + +KK
Sbjct: 447 GACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKK 506

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEID-ALLEKSGFVPDTSEVLYDMDEE 630
               S +EVG  +++F  G+K        +E L EI   L +++G+ P+ +  LYD++EE
Sbjct: 507 TTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASALYDVEEE 566

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KE  +S HSEKLA+A+ L     G  IRIVKNLR+C +CH+  KL SK++  EI+ RDR
Sbjct: 567 EKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDR 626

Query: 691 NRFHHFKDGNCSCNDYW 707
           NRFH FKDG+CSC DYW
Sbjct: 627 NRFHSFKDGSCSCRDYW 643


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 272/689 (39%), Positives = 413/689 (59%), Gaps = 7/689 (1%)

Query: 20  SSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGD 79
           S+  P  L      L L +   ++   + VH+Q+   G+ +   A + L  + A      
Sbjct: 52  SAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYA--KCRR 109

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILS-GFVPNTYTFPFILK 138
            + A  VF+ +   ++V WN ++ G++ +    +A++  VRM    G  P++ T   +L 
Sbjct: 110 PADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLP 169

Query: 139 SCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVS 198
           +CA   A++  ++ HA  ++ GLE    V T++++ Y + G++ +AR+VF+    +++VS
Sbjct: 170 ACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVS 229

Query: 199 YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           + A+I GYA  G   +A  LF+ M   EE     + +V+  L AC  +G L+ G  V  L
Sbjct: 230 WNAMIDGYAQNGDSREALALFNRMV--EEGVDVTDVSVLAALQACGELGCLDEGMRVHEL 287

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
           +   GL SN+ V NALI MYSKC  +  A  +F+ +++R  +SWN MI G       ++A
Sbjct: 288 LVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDA 347

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
           + LF +M   N++P+  T +SV+PA A +      +WIH Y  + H    +V + T+LID
Sbjct: 348 VRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLD-QDVYVLTALID 406

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
           MYAKCG +  A  +F+    + + +WNAMI G   HG    A+ LF  M   G+ P++ T
Sbjct: 407 MYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETT 466

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
           F+ VLSAC+HAGL+D GR+YF +M +DY + P ++HYG MVDLLGRAG  DEA A ++ M
Sbjct: 467 FLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKM 526

Query: 499 EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVA 558
            M P  +++ ++LGAC++H  +EL E  A+ + EL P+    +VLL+N+YA A  W DVA
Sbjct: 527 PMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVA 586

Query: 559 TIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVP 618
            +RT +   G++K PG S I++ + +H F  G   H Q+K IY  L ++   ++  G+VP
Sbjct: 587 RVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVP 646

Query: 619 DTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLIS 678
           DT  + +D++++ K   L+ HSEKLAIA+GLI T PGTTI+I KNLRVC +CH+ATKLIS
Sbjct: 647 DTDSI-HDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLIS 705

Query: 679 KIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            +  REII RD  RFHHFKDG CSC DYW
Sbjct: 706 LVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  215 bits (548), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 149/482 (30%), Positives = 238/482 (49%), Gaps = 45/482 (9%)

Query: 114 AIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLIN 173
           A+  +V M  +G  P   TF  +LK CA    ++ G+ +HA +   G++S+    T+L N
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 174 MYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
           MYA+      AR VF++  +RD V++ AL+ GYA  G    A ++   M   EE   P+ 
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQ-EEEGERPDS 161

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
            T+V+VL ACA+  +L       +     GL   ++V  A++D Y KCGD+  AR +F+ 
Sbjct: 162 ITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDW 221

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
           +  ++ +SWN MI GY    D +EAL LF +M++  ++  DV+ L+ L AC  LG LD G
Sbjct: 222 MPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEG 281

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAM 413
             +H  + +     +NVS+  +LI MY+KC  +  A  VFD +  +T  SWNAMI G A 
Sbjct: 282 MRVHELLVRIGLD-SNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQ 340

Query: 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSAC--------------------------- 446
           +G ++ A+ LF+RM  E ++PD  T V V+ A                            
Sbjct: 341 NGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYV 400

Query: 447 --------NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAG--LFDEAEALLK 496
                      G ++I R  FN+  + + I+     +G      G+A   LF+E    +K
Sbjct: 401 LTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEE----MK 456

Query: 497 TMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA--YVLLSNMYAGAGRW 554
           ++ + P+   + S+L AC   G ++ G      + E     PG   Y  + ++   AG+ 
Sbjct: 457 SIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKL 516

Query: 555 DD 556
           D+
Sbjct: 517 DE 518


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 256/683 (37%), Positives = 406/683 (59%), Gaps = 79/683 (11%)

Query: 31  QPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICA-----VSPFGDLSYALL 85
            P LALL  C++  ++K +H  +++T L +  F  S+L+ +C        P   L YA  
Sbjct: 13  HPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYG 72

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145
           +F  I+ PN  ++N +IR  S  + P  A  FY +M+ S   P+  TFPF++K+ +++  
Sbjct: 73  IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMEC 132

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
           +  G+Q H+ +++ G ++D +V  SL++MY                              
Sbjct: 133 VLVGEQTHSQIVRFGFQNDVYVENSLVHMY------------------------------ 162

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
            A+ G++  A ++F +M  R+         VV+               W  S++ G    
Sbjct: 163 -ANCGFIAAAGRIFGQMGFRD---------VVS---------------WT-SMVAG---- 192

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
                       Y KCG +  AR++F+ +  R++ +W++MI GY   + +++A+ LF  M
Sbjct: 193 ------------YCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFM 240

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
            +  +  N+   +SV+ +CA+LGAL+ G+  + Y+ K+H  +N + L T+L+DM+ +CG+
Sbjct: 241 KREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLI-LGTALVDMFWRCGD 299

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           I+ A  VF+G+      SW+++I GLA+HG A KA+  FS+MI  G  P D+TF  VLSA
Sbjct: 300 IEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSA 359

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           C+H GL++ G + +  M +D+ I P+L+HYGC+VD+LGRAG   EAE  +  M +KP+A 
Sbjct: 360 CSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAP 419

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
           I  +LLGAC+++   E+ E V   L++++PE+ G YVLLSN+YA AG+WD + ++R  + 
Sbjct: 420 ILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMK 479

Query: 566 DKGMKKVPGCSSIEVGSVVHEFLVG-DKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVL 624
           +K +KK PG S IE+   +++F +G D+ HP+   I    +EI   +   G+  +T +  
Sbjct: 480 EKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAF 539

Query: 625 YDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNRE 684
           +D+DEE KE ++  HSEKLAIAYG++ TKPGTTIRIVKNLRVC +CH+ TKLIS+++ RE
Sbjct: 540 FDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRE 599

Query: 685 IIARDRNRFHHFKDGNCSCNDYW 707
           +I RDRNRFHHF++G CSC DYW
Sbjct: 600 LIVRDRNRFHHFRNGVCSCRDYW 622


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 263/647 (40%), Positives = 393/647 (60%), Gaps = 46/647 (7%)

Query: 104 GHSLSSSPVVAIKFYVRMILSGFVP----NTYTFPFILKSCAKISAISEGKQ-------- 151
           G+S    P  +  F   +  SG  P    N+ + P  LKS  +   IS  ++        
Sbjct: 7   GNSTMPCPYASTTFAASLPFSGPSPKPHPNSNSNPKSLKSLDQKQIISLLQRSRHINQVL 66

Query: 152 -IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            IHA +++ G   DPF+   L+   ++   ++ A  +F  +   +   YTALI G+ S G
Sbjct: 67  PIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSG 126

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
              +A QL+  M    E+ +P+   + ++L AC    +L  G  V S     G  SN  V
Sbjct: 127 NYLEAIQLYSRML--HESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLV 184

Query: 271 TNALIDMYSKCGDLVKARDLFES------------------------------IEKRDVI 300
              ++++Y KCG+L  AR +FE                               + ++D +
Sbjct: 185 RLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTV 244

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
            W  MI G+    +   AL  FR M   N+ PN+ T + VL AC+ LGAL++G+W+H+Y+
Sbjct: 245 CWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYM 304

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
            K   +LN + +  +LI+MY++CG+I  A+ VFD M  + + ++N MISGL+M+GK+ +A
Sbjct: 305 RKFEIELN-LFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQA 363

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
           + LF  M+G  L+P ++TFVGVL+AC+H GL+D G + F++M +DY++ P+++HYGCMVD
Sbjct: 364 IELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVD 423

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540
           LLGR G  +EA  L++TM+M PD  +  +LL AC++H  LELGE VAK L +    + G 
Sbjct: 424 LLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGT 483

Query: 541 YVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHI 600
           YVLLS++YA +G+W + A +R ++ + GM+K PGCSSIEV + +HEFL+GD  HPQ + I
Sbjct: 484 YVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERI 543

Query: 601 YEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRI 660
           YE L+E++ LL   G+ P+   VL D+++  KE AL+ HSE+LAI YGLIST+P T IR+
Sbjct: 544 YEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLISTEPCTMIRV 603

Query: 661 VKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +KNLRVC +CHSA KLI+KI  R+I+ RDRNRFH+F++G CSC DYW
Sbjct: 604 MKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 650



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 137/481 (28%), Positives = 242/481 (50%), Gaps = 47/481 (9%)

Query: 1   MALPPSSLTLSPSILHFPPSSDP---------PYKLLQNQPSLALLSKCTNMQNIKQVHS 51
           M  P +S T + S+    PS  P           K L  +  ++LL +  ++  +  +H+
Sbjct: 11  MPCPYASTTFAASLPFSGPSPKPHPNSNSNPKSLKSLDQKQIISLLQRSRHINQVLPIHA 70

Query: 52  QIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSP 111
           Q+I+ G     F + +L+  C  S    + YA  +F+    PN  ++  +I G   S + 
Sbjct: 71  QLIRNGHSQDPFMVFELLRSC--SKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNY 128

Query: 112 VVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSL 171
           + AI+ Y RM+    +P+ Y    ILK+C    A+ EG+++H+  LKLG  S+  V   +
Sbjct: 129 LEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRI 188

Query: 172 INMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE----- 226
           + +Y + GEL  AR VF +    D V+ T +I+ Y+ +G +++A  +F  +  ++     
Sbjct: 189 MELYGKCGELGDARRVFEEMP-EDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWT 247

Query: 227 ------------------------ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
                                   EN  PNE T+V VLSAC+ +G+LE+G WV S +   
Sbjct: 248 AMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKF 307

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
            +  NL V NALI+MYS+CG + +A+ +F+ ++ RDVI++N MI G +     ++A+ LF
Sbjct: 308 EIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELF 367

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
           R M+   + P +VTF+ VL AC++ G +D G  I   + ++++    +  +  ++D+  +
Sbjct: 368 RVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGR 427

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSL---FSRMIGEGLQPDDITF 439
            G +   E+ +D +    +   + M+  L    K  K L L    ++ + +  Q D  T+
Sbjct: 428 VGRL---EEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTY 484

Query: 440 V 440
           V
Sbjct: 485 V 485


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 280/694 (40%), Positives = 410/694 (59%), Gaps = 40/694 (5%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K +H +I+K G     FA + L+ +   S F  L  A  +F+ + E N + +  +I+G++
Sbjct: 58  KGLHCEILKRGGCLDLFAWNILLNMYVKSDF--LCDASKLFDEMPERNTISFVTLIQGYA 115

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            S   + AI+ +VR+   G   N + F  ILK          G  IHA + KLG ES+ F
Sbjct: 116 ESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAF 175

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V T+LI+ Y+  G ++ AR VF+    +D VS+T ++T +A      +A +LF +M  R 
Sbjct: 176 VGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQM--RM 233

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWV--CSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
             F PN  T  +V  AC  + + ++G  V  C+L   + L  +L+V  AL+D+Y+K GD+
Sbjct: 234 VGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYEL--DLYVGVALLDLYTKSGDI 291

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
             AR  FE I K+DVI W+ MI  Y  +   KEA+ +F QM Q+ + PN  TF SVL AC
Sbjct: 292 DDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQAC 351

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
           A +  L+LG  IH ++ K     ++V +  +L+D+YAKCG ++ + ++F    ++   +W
Sbjct: 352 ATMEGLNLGNQIHCHVIKIGLH-SDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTW 410

Query: 405 NAMISGLAMHGKADKALSLFSRMIG------------------------EGLQ------- 433
           N +I G    G  +KAL LF  M+                          GLQ       
Sbjct: 411 NTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVK 470

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
           PD +TFVGVLSAC +AGLLD G+ YF +MIQD+ I P ++HY CMV LLGR G  D+A  
Sbjct: 471 PDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVK 530

Query: 494 LLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGR 553
           L+  +  +P   +W +LLGAC +H  +ELG   A+ +LE+EP++   +VLLSNMYA A R
Sbjct: 531 LIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKR 590

Query: 554 WDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEK 613
           WD+VA++R  +  KG+KK PG S IE    VH F VGD  HP+ + I  ML+ +    +K
Sbjct: 591 WDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKK 650

Query: 614 SGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSA 673
           +G++P+ + VL D+++E KE  L  HSE+LA+++G+I T  G+ IRI+KNLR+C +CH+A
Sbjct: 651 AGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAA 710

Query: 674 TKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            K ISK+  REI+ RD NRFHHF++G CSC DYW
Sbjct: 711 IKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 744



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 126/431 (29%), Positives = 206/431 (47%), Gaps = 11/431 (2%)

Query: 103 RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE 162
           RG S+ S+ +   +F   +  S F  N++ +   L+ C +    S GK +H  +LK G  
Sbjct: 14  RGFSVQSAKLTQ-EFVGHVSPSEF--NSHAYANALQDCIQKDEPSRGKGLHCEILKRGGC 70

Query: 163 SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
            D F    L+NMY ++  L  A  +F++   R+ +S+  LI GYA      +A +LF  +
Sbjct: 71  LDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRL 130

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
                   P   T +  L      G L  G   C    GH   SN  V  ALID YS CG
Sbjct: 131 HREGHELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHE--SNAFVGTALIDAYSVCG 188

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
            +  AR++F+ I  +D++SW  M+  +     +KEAL LF QM     +PN+ TF SV  
Sbjct: 189 RVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFK 248

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           AC  L A D+GK +H    K+  +L ++ +  +L+D+Y K G+I  A + F+ +  K + 
Sbjct: 249 ACLGLEAFDVGKSVHGCALKSRYEL-DLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVI 307

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
            W+ MI+  A   ++ +A+ +F +M    + P+  TF  VL AC     L++G Q    +
Sbjct: 308 PWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHV 367

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
           I+   +   +     ++D+  + G  + +  L      + D    T ++G    H +L  
Sbjct: 368 IK-IGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVG----HVQLGD 422

Query: 523 GESVAKHLLEL 533
           GE   +  L +
Sbjct: 423 GEKALRLFLNM 433


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 250/591 (42%), Positives = 371/591 (62%), Gaps = 42/591 (7%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLH-NTQFALS-KLIEICAVSPFGDLSYALLVFETIR 91
           L+ L  C +++ +KQ+H+ IIKT    + Q  +S +L  +CA S   D  YAL +   +R
Sbjct: 41  LSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLR 100

Query: 92  EPNQVIWNNIIRGHSLSSSPVV-AIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            PN  ++N IIRG + S++  +  +  Y +M+  G VP+ YT PF+LK+CA+  A+ EG+
Sbjct: 101 TPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGE 160

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           ++H   +K+GL SD +V  +L+ MYA    + SAR VF+ S  RD VS+T +I GY   G
Sbjct: 161 EVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMG 220

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
           +  +   L+                                      +I    +  ++ V
Sbjct: 221 FAREGVGLY--------------------------------------IIRNSNVNLDVFV 242

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            NAL+DMY KCGD   AR +F+ +  ++V+SWN MI G      +KE+L +FR+M +  +
Sbjct: 243 GNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGV 302

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           +P+DVT ++VL +CA LG L+LGKW+HAY+D+N  + +   +  +L+DMYAKCG+I  A 
Sbjct: 303 KPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGF-IGNALVDMYAKCGSIDQAC 361

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
            VF  M  K + S+ AMI GLAMHG+  KAL LFS M   G++PD++TFVGVL+AC+H G
Sbjct: 362 WVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVG 421

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L++ GR+YF  M   Y + P+L+HYGCMVDLLGRAGL +EAE  ++ M ++PDA +  +L
Sbjct: 422 LVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGAL 481

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           LGAC++HG++ELGESV K + ++EP   GAYVL+SN+Y+ A RW D   +R  + ++ ++
Sbjct: 482 LGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLE 541

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTS 621
           K PGCSSIE+  V+HEF  GDK HP+ K IY++LDEI + L+ +  +  TS
Sbjct: 542 KTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHLKNNECLTRTS 592


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 249/562 (44%), Positives = 364/562 (64%), Gaps = 3/562 (0%)

Query: 146  ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
            +++ +Q+H      G+  +  V   L+  Y+    L+ A  +F+   +RD+VS++ ++ G
Sbjct: 751  LTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 810

Query: 206  YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
            +A  G   +    F E+ IR     P+  T+  V+ AC  + +L++G  +  ++   GL 
Sbjct: 811  FAKVGDYMNCFGTFREL-IRC-GARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLD 868

Query: 266  SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
             +  V  AL+DMY KC ++  AR LF+ + +RD+++W VMIGGY    +  E+L+LF +M
Sbjct: 869  LDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKM 928

Query: 326  LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
             +  + P+ V  ++V+ ACA LGA+   + I  YI +   +L+ V L T++IDM+AKCG 
Sbjct: 929  REEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLD-VILGTAMIDMHAKCGC 987

Query: 386  IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
            +++A ++FD M  K + SW+AMI+    HG+  KAL LF  M+  G+ P+ IT V +L A
Sbjct: 988  VESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYA 1047

Query: 446  CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
            C+HAGL++ G ++F+ M +DY +   ++HY C+VDLLGRAG  DEA  L+ +M  + D  
Sbjct: 1048 CSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEG 1107

Query: 506  IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
            +W + LGACR H  + L E  A  LLEL+P+NPG Y+LLSN+YA AGRW+DVA IR  ++
Sbjct: 1108 LWGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMS 1167

Query: 566  DKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLY 625
             + +KK+PG + IEV +  H+F VGD  HP+SK IYEML  +   LE  G+VPDT+ VL+
Sbjct: 1168 QRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLH 1227

Query: 626  DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREI 685
            D+DEE K G L  HSEKLAIA+GLI+T   T IRI+KNLRVCG+CH+  KL+S I  R I
Sbjct: 1228 DVDEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVI 1287

Query: 686  IARDRNRFHHFKDGNCSCNDYW 707
            I RD NRFHHFK+G CSC DYW
Sbjct: 1288 IVRDANRFHHFKEGACSCGDYW 1309



 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/531 (42%), Positives = 336/531 (63%), Gaps = 3/531 (0%)

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
           F + +      +++ +Q+HA     G+  +  V   LI  Y+    L+ A  +F+   +R
Sbjct: 64  FYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVR 123

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
           D+VS++ ++ G+A  G   +    F E+ IR     P+  T+  V+ AC  + +L++G  
Sbjct: 124 DSVSWSVMVGGFAKVGDYINCFGTFREL-IRC-GARPDNYTLPFVIRACRDLKNLQMGRL 181

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           +  ++   GL  +  V  AL+DMY KC ++  AR LF+ +++RD+++W VMIGGY     
Sbjct: 182 IHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGK 241

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
             E+L+LF +M +  + P+ V  ++V+ ACA LGA+   + I  YI +   +L+ V L T
Sbjct: 242 ANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLD-VILGT 300

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
           ++IDMYAKCG +++A ++FD M  K + SW+AMI+    HG+  KAL LF  M+  G+ P
Sbjct: 301 AMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLP 360

Query: 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494
           D IT   +L AC+HAGL++ G ++F++M +DY +   ++HY C+VDLLGRAG  DEA  L
Sbjct: 361 DKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKL 420

Query: 495 LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554
           +K+M ++ D  +W + LGACR H  + L E  A  LLEL+ +NPG YVLLSN+YA AGRW
Sbjct: 421 IKSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRW 480

Query: 555 DDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKS 614
           +DVA IR  ++ + +KK PG + IEV +  H+F VGD  HP+SK IYEML  +   LE  
Sbjct: 481 EDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKLELV 540

Query: 615 GFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLR 665
           G+VPDT+ VL+D+DEE K G L  HSEKLAIA+GLI+T   T IRI+KNLR
Sbjct: 541 GYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLR 591



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 118/403 (29%), Positives = 213/403 (52%), Gaps = 12/403 (2%)

Query: 13  SILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEIC 72
           S  HF    +P +        ++ L  C N+  ++QVH+Q    G+       +KLI   
Sbjct: 52  SKFHFLQRLNPKF-------YISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFY 104

Query: 73  AVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYT 132
           +     D +Y L  F+ +   + V W+ ++ G +     +     +  +I  G  P+ YT
Sbjct: 105 SYYRALDDAYGL--FDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYT 162

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
            PF++++C  +  +  G+ IH  V K GL+ D FV  +L++MY +  E+E AR +F+K  
Sbjct: 163 LPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQ 222

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
            RD V++T +I GYA  G  +++  LF++M  REE  VP++  +VTV+ ACA +G++   
Sbjct: 223 ERDLVTWTVMIGGYAECGKANESLVLFEKM--REEGVVPDKVAMVTVVFACAKLGAMHKA 280

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
             +   I+      ++ +  A+IDMY+KCG +  AR++F+ +E+++VISW+ MI  Y + 
Sbjct: 281 RIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH 340

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
              ++AL LF  ML S + P+ +T  S+L AC++ G ++ G    + + +++    +V  
Sbjct: 341 GQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKH 400

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGY-KTLASWNAMISGLAMH 414
           +T ++D+  + G +  A ++   M   K    W A +     H
Sbjct: 401 YTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTH 443



 Score =  205 bits (521), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 114/375 (30%), Positives = 205/375 (54%), Gaps = 5/375 (1%)

Query: 41   TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNN 100
            TN+  ++QVH Q    G+       +KL+   +     D +Y L  F+ +   + V W+ 
Sbjct: 749  TNLTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGL--FDGMCVRDSVSWSV 806

Query: 101  IIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG 160
            ++ G +     +     +  +I  G  P+ YT PF++++C  +  +  G+ IH  V K G
Sbjct: 807  MVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 866

Query: 161  LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD 220
            L+ D FV  +L++MY +  E+E AR +F+K   RD V++T +I GYA  G  +++  LFD
Sbjct: 867  LDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFD 926

Query: 221  EMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK 280
            +M  REE  VP++  +VTV+ ACA +G++     +   I+      ++ +  A+IDM++K
Sbjct: 927  KM--REEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAK 984

Query: 281  CGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSV 340
            CG +  AR++F+ +E+++VISW+ MI  Y +    ++AL LF  ML+S I PN +T +S+
Sbjct: 985  CGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSL 1044

Query: 341  LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-K 399
            L AC++ G ++ G    + + +++    +V  +T ++D+  + G +  A ++   M   K
Sbjct: 1045 LYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEK 1104

Query: 400  TLASWNAMISGLAMH 414
                W A +     H
Sbjct: 1105 DEGLWGAFLGACRTH 1119


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 272/689 (39%), Positives = 413/689 (59%), Gaps = 7/689 (1%)

Query: 20  SSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGD 79
           S+  P  L      L L +   ++   + VH+Q+   G+ +   A + L  + A      
Sbjct: 52  SAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYA--KCRR 109

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILS-GFVPNTYTFPFILK 138
            + A  VF+ +   ++V WN ++ G++ +    +A++  VRM    G  P++ T   +L 
Sbjct: 110 PADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLP 169

Query: 139 SCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVS 198
           +CA   A++  ++ HA  ++ GLE    V T++++ Y + G++ +AR+VF+    +++VS
Sbjct: 170 ACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVS 229

Query: 199 YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           + A+I GYA  G   +A  LF+ M   EE     + +V+  L AC  +G L+ G  V  L
Sbjct: 230 WNAMIDGYAQNGDSREALALFNRMV--EEGVDVTDVSVLAALQACGELGCLDEGMRVHEL 287

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
           +   GL SN+ V NALI MYSKC  +  A  +F+ +++R  +SWN MI G       ++A
Sbjct: 288 LVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDA 347

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
           + LF +M   N++P+  T +SV+PA A +      +WIH Y  + H    +V + T+LID
Sbjct: 348 VRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLD-QDVYVLTALID 406

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
           MYAKCG +  A  +F+    + + +WNAMI G   HG    A+ LF  M   G+ P++ T
Sbjct: 407 MYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETT 466

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
           F+ VLSAC+HAGL+D GR+YF +M +DY + P ++HYG MVDLLGRAG  DEA A ++ M
Sbjct: 467 FLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKM 526

Query: 499 EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVA 558
            M P  +++ ++LGAC++H  +EL E  A+ + EL P+    +VLL+N+YA A  W DVA
Sbjct: 527 PMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVA 586

Query: 559 TIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVP 618
            +RT +   G++K PG S I++ + +H F  G   H Q+K IY  L ++   ++  G+VP
Sbjct: 587 RVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVP 646

Query: 619 DTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLIS 678
           DT  + +D++++ K   L+ HSEKLAIA+GLI T PGTTI+I KNLRVC +CH+ATKLIS
Sbjct: 647 DTDSI-HDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLIS 705

Query: 679 KIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            +  REII RD  RFHHFKDG CSC DYW
Sbjct: 706 LVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 151/494 (30%), Positives = 242/494 (48%), Gaps = 45/494 (9%)

Query: 102 IRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGL 161
           +R  +  S    A+  +V M  +G  P   TF  +LK CA    ++ G+ +HA +   G+
Sbjct: 31  LRASAARSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGI 90

Query: 162 ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDE 221
           +S+    T+L NMYA+      AR VF++  +RD V++ AL+ GYA  G    A ++   
Sbjct: 91  DSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVR 150

Query: 222 MPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC 281
           M   EE   P+  T+V+VL ACA+  +L       +     GL   ++V  A++D Y KC
Sbjct: 151 MQ-EEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKC 209

Query: 282 GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
           GD+  AR +F+ +  ++ +SWN MI GY    D +EAL LF +M++  ++  DV+ L+ L
Sbjct: 210 GDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAAL 269

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
            AC  LG LD G  +H  + +     +NVS+  +LI MY+KC  +  A  VFD +  +T 
Sbjct: 270 QACGELGCLDEGMRVHELLVRIGLD-SNVSVMNALITMYSKCKRVDLASHVFDELDRRTQ 328

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC--------------- 446
            SWNAMI G A +G ++ A+ LF+RM  E ++PD  T V V+ A                
Sbjct: 329 VSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGY 388

Query: 447 --------------------NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAG 486
                                  G ++I R  FN+  + + I+     +G      G+A 
Sbjct: 389 SIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAA 448

Query: 487 --LFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA--YV 542
             LF+E    +K++ + P+   + S+L AC   G ++ G      + E     PG   Y 
Sbjct: 449 VELFEE----MKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYG 504

Query: 543 LLSNMYAGAGRWDD 556
            + ++   AG+ D+
Sbjct: 505 TMVDLLGRAGKLDE 518


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 256/692 (36%), Positives = 413/692 (59%), Gaps = 14/692 (2%)

Query: 17  FPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSP 76
           FP +S     +LQ    L LLS        +++H+ ++K G   ++  +     +   + 
Sbjct: 263 FPMNSYTSVAVLQVCAELGLLSLG------RELHAALLKCG---SELNIQCNALLVMYAK 313

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
           +G +  AL VF  I E + + WN+++  +  +S    AI F+  M+  GF P+      +
Sbjct: 314 YGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSL 373

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
             +   +S ++ G++ HA+ +K  L +D  V  +L++MY + G +E +  VF    +RD 
Sbjct: 374 SSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDH 433

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           +S+T ++  +A      +A ++  E+  ++E  + +   + ++L  C  + S+ L   V 
Sbjct: 434 ISWTTILACFAQSSRHSEALEMILEL--QKEGIMVDSMMIGSILETCCGLKSISLLKQVH 491

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
                +GL  +L + N LID+Y +CG+   + +LF+ +EK+D++SW  MI   T+     
Sbjct: 492 CYAIRNGL-LDLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLN 550

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
            A+ LF +M ++NI+P+ V  +S+L A A L +L  GK +H ++ + +  +    + +SL
Sbjct: 551 GAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEG-PVVSSL 609

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           +DMY+ CG++  A +VF+    K +  W AMI+   MHG   +A+ LF RM+  GL PD 
Sbjct: 610 VDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDH 669

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
           ++F+ +L AC+H+ L++ G+ Y + M+  Y++ P  +HY C+VD+LGR+G  +EA   +K
Sbjct: 670 VSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIK 729

Query: 497 TMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
           TM M P +A+W +LLGACRVH    L    A  LLELEP+NPG Y+L+SN++A  G+W++
Sbjct: 730 TMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNN 789

Query: 557 VATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEK-SG 615
               RTR+ ++G++K P CS IE+G+ +H F  GD  H  S+ I+  L EI  +L +  G
Sbjct: 790 AKETRTRMAERGLRKNPACSWIEIGNNIHTFTSGDYCHRDSEAIHLKLSEITEMLRREGG 849

Query: 616 FVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATK 675
           +V DT  VL+D  EE K   L  HSE++AIA+GLIST+PG  IRI KNLRVCG+CH  TK
Sbjct: 850 YVEDTRFVLHDTSEEEKIDMLHKHSERIAIAFGLISTRPGMPIRIAKNLRVCGDCHEFTK 909

Query: 676 LISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           L+SK+F R+I+ RD NRFHHF  G+CSC D+W
Sbjct: 910 LVSKLFERDIVVRDANRFHHFSGGSCSCEDFW 941



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 141/502 (28%), Positives = 257/502 (51%), Gaps = 15/502 (2%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVI--WNNIIRGH 105
           +VH   +K GL  +    + LI + A    G L  AL VFE +++  + +  WN+++ G 
Sbjct: 185 EVHGLAVKVGLDKSTLVANALIGMYA--KCGLLDSALRVFEWLQQDARDVASWNSVVSGC 242

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
             +   + A+  +  M  +GF  N+YT   +L+ CA++  +S G+++HA +LK G E + 
Sbjct: 243 VQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNI 302

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
             +  L+ MYA+ G ++SA  VF + + +D +S+ ++++ Y    +  +A   F EM   
Sbjct: 303 QCNALLV-MYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEML-- 359

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
           +  F P+ + VV++ SA  H+  L  G    +      L ++L V N L+DMY KCG + 
Sbjct: 360 QHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIE 419

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
            +  +FES+  RD ISW  ++  +  +S + EAL +  ++ +  I  + +   S+L  C 
Sbjct: 420 CSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCC 479

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
            L ++ L K +H Y  +N   L ++ L   LID+Y +CG    +  +F  +  K + SW 
Sbjct: 480 GLKSISLLKQVHCYAIRN--GLLDLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWT 537

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI-Q 464
           +MI+    +G+ + A+ LF+ M    +QPD +  V +L A      L  G+Q    +I +
Sbjct: 538 SMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRR 597

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGE 524
           ++ I   +     +VD+    G  + A  + +  + K D  +WT+++ A  +HG  +   
Sbjct: 598 NFPIEGPV--VSSLVDMYSGCGSMNYAIRVFERAKCK-DVVLWTAMINATGMHGHGKQAI 654

Query: 525 SVAKHLLE--LEPENPGAYVLL 544
            + K +L+  L P++     LL
Sbjct: 655 DLFKRMLQTGLTPDHVSFLALL 676



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 130/402 (32%), Positives = 202/402 (50%), Gaps = 11/402 (2%)

Query: 119 VRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGL---ESDPFVHTSLINMY 175
           +R + +   P    + ++L   A   A +EG+Q+HAH +  G    + D F+ T L+ MY
Sbjct: 46  LRQLTTRAPPAREHYGWVLDLVAARRAAAEGRQVHAHAVTTGSLNEDDDGFLATKLVFMY 105

Query: 176 AQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREE-NFVPNES 234
            + G ++ AR +FN    R   S+ AL+  Y S G   +A +++  M         P+  
Sbjct: 106 GRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGC 165

Query: 235 TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
           T+ +VL AC   G    G  V  L    GL  +  V NALI MY+KCG L  A  +FE +
Sbjct: 166 TLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRVFEWL 225

Query: 295 EK--RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL 352
           ++  RDV SWN ++ G        EAL LFR M  +    N  T ++VL  CA LG L L
Sbjct: 226 QQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSL 285

Query: 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLA 412
           G+ +HA + K   +LN      +L+ MYAK G + +A +VF  +  K   SWN+M+S   
Sbjct: 286 GRELHAALLKCGSELNIQC--NALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYV 343

Query: 413 MHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL 472
            +    +A+  F  M+  G QPD    V + SA  H   L+ GR+ F+A     ++   L
Sbjct: 344 QNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGRE-FHAYAIKQRLHTDL 402

Query: 473 QHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
           Q    ++D+  + G  + +  + ++M ++ D   WT++L AC
Sbjct: 403 QVGNTLMDMYIKCGSIECSAKVFESMGIR-DHISWTTIL-AC 442


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 250/610 (40%), Positives = 370/610 (60%), Gaps = 31/610 (5%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P+   +  ++ +C +  A+  G+++HAH          F+   L++MYA+ G L  A+++
Sbjct: 85  PSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQML 144

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE--------------------- 226
           F++   RD  S+  +I GYA  G L+ AR+LFDEMP R+                     
Sbjct: 145 FDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREAL 204

Query: 227 ---------ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDM 277
                    E    N+ T+ + L+A A +  L LG  +   +    L  +  V +AL+D+
Sbjct: 205 ELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDL 264

Query: 278 YSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTF 337
           Y KCG L +AR +F+ ++ RDV+SW  MI         +E  +LFR ++QS + PN+ TF
Sbjct: 265 YGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTF 324

Query: 338 LSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG 397
             VL ACA   A  LGK +H Y+        + ++ ++L+ MY+KCGN + A +VF+ M 
Sbjct: 325 AGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAI-SALVHMYSKCGNTRVARRVFNEMH 383

Query: 398 YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
              L SW ++I G A +G+ D+AL  F  ++  G +PD +T+VGVLSAC HAGL+D G +
Sbjct: 384 QPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLE 443

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
           YF+++ + + +     HY C++DLL R+G F EAE ++  M +KPD  +W SLLG CR+H
Sbjct: 444 YFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIH 503

Query: 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577
           G LEL +  AK L E+EPENP  Y+ L+N+YA AG W +VA +R  +++ G+ K PG S 
Sbjct: 504 GNLELAKRAAKALYEIEPENPATYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSW 563

Query: 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALS 637
           IE+   VH FLVGD  HP++  I+E L E+   +++ G+VPDT+ VL+D++EE KE  L 
Sbjct: 564 IEIKRQVHVFLVGDTSHPKTSDIHEFLGELSKKIKEEGYVPDTNFVLHDVEEEQKEQNLV 623

Query: 638 HHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFK 697
           +HSEKLA+ +G+IST PGT I++ KNLR C +CH+A K ISKI  R+I  RD NRFH F+
Sbjct: 624 YHSEKLAVVFGIISTPPGTPIKVFKNLRTCVDCHTAIKYISKIVQRKITVRDSNRFHCFE 683

Query: 698 DGNCSCNDYW 707
           DG+CSC DYW
Sbjct: 684 DGSCSCKDYW 693



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 136/264 (51%), Gaps = 6/264 (2%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K++H  +I+T L+  +   S L+++      G L  A  +F+ +++ + V W  +I    
Sbjct: 240 KEIHGYLIRTELNLDEVVWSALLDL--YGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCF 297

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
                      +  ++ SG  PN YTF  +L +CA  +A   GK++H +++  G +   F
Sbjct: 298 EDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSF 357

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
             ++L++MY++ G    AR VFN+    D VS+T+LI GYA  G  D+A   F+   + +
Sbjct: 358 AISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFE--LLLQ 415

Query: 227 ENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
               P++ T V VLSAC H G ++ G  +  S+ E HGL         +ID+ ++ G   
Sbjct: 416 SGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFK 475

Query: 286 KARDLFESIE-KRDVISWNVMIGG 308
           +A ++ +++  K D   W  ++GG
Sbjct: 476 EAENIIDNMPVKPDKFLWASLLGG 499



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 37/206 (17%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K+VH  ++  G     FA+S L+ +   S  G+   A  VF  + +P+ V W ++I G++
Sbjct: 341 KEVHGYMMHAGYDPGSFAISALVHM--YSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYA 398

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +  P  A+ F+  ++ SG  P+  T+  +L +C            HA ++  GLE   +
Sbjct: 399 QNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACT-----------HAGLVDKGLE---Y 444

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
            H+    +  ++G + +A              Y  +I   A  G   +A  + D MP++ 
Sbjct: 445 FHS----IKEKHGLMHTAD------------HYACVIDLLARSGRFKEAENIIDNMPVKP 488

Query: 227 ENFVPNESTVVTVLSACAHMGSLELG 252
           + F+       ++L  C   G+LEL 
Sbjct: 489 DKFL-----WASLLGGCRIHGNLELA 509


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 265/678 (39%), Positives = 402/678 (59%), Gaps = 9/678 (1%)

Query: 34  LALLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           +A+L+ C + +++K   ++H QI++ G     F  + LI +   +  G +  A   F+ +
Sbjct: 109 VAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINM--YNKCGSVRGAWDSFKRL 166

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
              + V W  +I          +A   Y RM L G VPN  T   +  +    + +SEGK
Sbjct: 167 EHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGK 226

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            ++  V    +ESD  V  S +NM+   G L  AR +F     RD V++  +IT Y    
Sbjct: 227 FVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNE 286

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
              +A +LF  +  +++    N+ T V +L+    + SL  G  +  L++  G   +  V
Sbjct: 287 NFGEAVRLFGRL--QQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVV 344

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
             AL+ +Y +C    +A  +F  +  +DVI+W VM   Y      KEAL LF++M     
Sbjct: 345 ATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGR 404

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
            P   T ++VL  CA+L AL  G+ IH++I +N  ++  V + T+LI+MY KCG +  A 
Sbjct: 405 RPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMV-VETALINMYGKCGKMAEAM 463

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
            VF+ M  + +  WN+M+   A HG  D+ L LF++M  +G++ D ++FV VLSA +H+G
Sbjct: 464 SVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSG 523

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA-EALLKTMEMKPDAAIWTS 509
            +  G QYF AM+QD+ I+P  + YGC+VDLLGRAG   EA + +LK     PD  +W +
Sbjct: 524 SVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMT 583

Query: 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
           LLGACR H + +  ++ A+ +LE +P + GAYV+LSN+YA AG WD V  +R  +  +G+
Sbjct: 584 LLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGV 643

Query: 570 KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE 629
           KK PG SSIE+ + VHEFL GD+ HP+   IY  LD +++ +  +G++PDT  +L+D+++
Sbjct: 644 KKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVED 703

Query: 630 EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
           E KE  L +HSE+LAIA+GLIST PGT +R++KNLRVC +CH+ATK ISK+  REI+ RD
Sbjct: 704 ERKEDMLFYHSERLAIAFGLISTPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRD 763

Query: 690 RNRFHHFKDGNCSCNDYW 707
            +RFH+FKDG CSC DYW
Sbjct: 764 THRFHNFKDGRCSCKDYW 781



 Score =  238 bits (608), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 147/488 (30%), Positives = 244/488 (50%), Gaps = 10/488 (2%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           +ALL +C++ +N+   ++VH  +   G          LI++ A    G +  A  VFE +
Sbjct: 8   VALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYA--QCGSVPEAQQVFEIL 65

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
              +   W  +I  +        A+  + +M     +P   T+  IL +CA   ++ +G 
Sbjct: 66  ERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGM 125

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           +IH  +L+ G E D FV T+LINMY + G +  A   F +   RD VS+TA+I       
Sbjct: 126 EIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHD 185

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
               AR L+  M +  +  VPN+ T+ TV +A      L  G +V  L+    + S++ V
Sbjct: 186 QFALARWLYRRMQL--DGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRV 243

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            N+ ++M+   G L  AR LFE +  RDV++WN++I  Y    ++ EA+ LF ++ Q  +
Sbjct: 244 MNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGV 303

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           + ND+TF+ +L     L +L  GK IH  + +     + V + T+L+ +Y +C     A 
Sbjct: 304 KANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAV-VATALMSLYGRCEAPGQAW 362

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           ++F  MG K + +W  M    A +G   +AL LF  M  EG +P   T V VL  C H  
Sbjct: 363 KIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLA 422

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
            L  GRQ  + +I++ +   ++     ++++ G+ G   EA ++ + M  K D  +W S+
Sbjct: 423 ALQKGRQIHSHIIEN-RFRMEMVVETALINMYGKCGKMAEAMSVFEKMA-KRDILVWNSM 480

Query: 511 LGACRVHG 518
           LGA   HG
Sbjct: 481 LGAYAQHG 488



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 124/474 (26%), Positives = 220/474 (46%), Gaps = 37/474 (7%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P+T  F  +L+ C+    +  G+++H HV   G E +  V   LI MYAQ G +  A+ V
Sbjct: 2   PDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 61

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
           F     +D  ++T +I  Y  +G  D A  +F +M  +EE+ +P + T V +L+ACA   
Sbjct: 62  FEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQM--QEEDVMPTKVTYVAILNACASTE 119

Query: 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG 307
           SL+ G  +   I   G   ++ V  ALI+MY+KCG +  A D F+ +E RDV+SW  MI 
Sbjct: 120 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIA 179

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
                  +  A  L+R+M    + PN +T  +V  A      L  GK+++  +     + 
Sbjct: 180 ACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVME- 238

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
           ++V +  S ++M+   G +  A ++F+ M  + + +WN +I+    +    +A+ LF R+
Sbjct: 239 SDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRL 298

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYF----------NAMI-------------- 463
             +G++ +DITFV +L+       L  G+             +A++              
Sbjct: 299 QQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAP 358

Query: 464 -QDYKI-----SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEM---KPDAAIWTSLLGAC 514
            Q +KI     S  +  +  M     + G   EA  L + M++   +P +A   ++L  C
Sbjct: 359 GQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTC 418

Query: 515 RVHGRLELGESVAKHLLELEPENPGAY-VLLSNMYAGAGRWDDVATIRTRLNDK 567
                L+ G  +  H++E            L NMY   G+  +  ++  ++  +
Sbjct: 419 AHLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKR 472


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 246/603 (40%), Positives = 374/603 (62%), Gaps = 5/603 (0%)

Query: 105 HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESD 164
           HS   SP  A++ + R +     P++ TF   L +CA++  +  G+ +       G + D
Sbjct: 84  HSRRGSPASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 165 PFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPI 224
            FV +SL+++YA+ G +  A  VF++   RD V+++ ++ G+ S G   DA Q++  M  
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRM-- 200

Query: 225 REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
           RE+    +E  ++ V+ AC    ++ +G  V   +  HG+  ++    +L+DMY+K G L
Sbjct: 201 REDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLL 260

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
             A  +F  +  R+ +SW+ MI G+       EAL LFR M  S I+P+    +S L AC
Sbjct: 261 DVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLAC 320

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
           + +G L LG+ +H +I +      N  L T+ IDMY+KCG++ +A+ +F+ +  + L  W
Sbjct: 321 SNIGFLKLGRSVHGFIVRRFD--FNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILW 378

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
           NAMI+    HG+   AL+LF  M   G++PD  TF  +LSA +H+GL++ G+ +F  M+ 
Sbjct: 379 NAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVN 438

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGE 524
            +KI+P  +HY C+VDLL R+GL +EA  LL +M+ +P  AIW +LL  C  + +LELGE
Sbjct: 439 HFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGE 498

Query: 525 SVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVV 584
           S+A ++LEL+P++ G   L+SN+YA   +WD V  +R  + D G KK+PGCSSIE+    
Sbjct: 499 SIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTR 558

Query: 585 HEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLA 644
           H FL+ D+ HPQ + I   + ++D  + K G++P T  V +D++EE KE  LS+HSEKLA
Sbjct: 559 HAFLMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSEKLA 618

Query: 645 IAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCN 704
           IA+GL++T PGT + I+KNLRVCG+CH A K ISKI +REI+ RD  RFHHFKDG CSC 
Sbjct: 619 IAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCR 678

Query: 705 DYW 707
           DYW
Sbjct: 679 DYW 681


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 260/686 (37%), Positives = 402/686 (58%), Gaps = 81/686 (11%)

Query: 30  NQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAV-------SPFGDLSY 82
             P LALL  C++  ++K +H  +++T L +  F  S+L+ +           P   L Y
Sbjct: 12  KHPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGY 71

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           A  +F  I+ PN  ++N +IR  S  + P  A  FY +M+ S   P+  TFPF++K+  +
Sbjct: 72  AYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTE 131

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
           +  +  G+Q H+ +++ G ++D +V  SL++MYA                          
Sbjct: 132 MECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANC------------------------ 167

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
                  G +  A ++F +MP R+         VV+               W  S++ G 
Sbjct: 168 -------GLIAAAGRIFGQMPFRD---------VVS---------------WT-SMVAG- 194

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
                          Y KCG +  AR++F+ +  R++ +W++MI GY   + +++A+ LF
Sbjct: 195 ---------------YCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLF 239

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
             M +  +  N+   +SV+ +CA+LGAL+ G+  H Y+ K+H  +N + L T+L+DMY +
Sbjct: 240 ELMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLI-LGTALVDMYWR 298

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
           CG I+ A +VF+ +  K   SW+++I GLA+HG A KA+  FS+M+  G  P DIT   V
Sbjct: 299 CGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAV 358

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
           LSAC+H GL+D G + +  M +DY I P+L+HYGC+VD+LGRAG   EAE  +  M +KP
Sbjct: 359 LSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKP 418

Query: 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562
           +A I  +LLGAC+++   E+ E V   L+E++PE+ G YVLLSN+YA AG+W+ + ++R 
Sbjct: 419 NAPILGALLGACKIYKNTEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRD 478

Query: 563 RLNDKGMKKVPGCSSIEVGSVVHEFLVG-DKVHPQSKHIYEMLDEIDALLEKSGFVPDTS 621
            + +K +KK PG S IE+   +++F +G D+ HP+   I  + +EI   +   G+  +T 
Sbjct: 479 IMKEKLVKKPPGWSLIEIDGKINKFSMGDDQKHPEMGKIKRLWEEILGKIRLIGYKGNTG 538

Query: 622 EVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIF 681
           +  +D+DEE KE A+  HSEKLAIAYG++ TK GTTIRIVKNLRVC +CH+ATKLIS+++
Sbjct: 539 DAFFDVDEEEKETAIHMHSEKLAIAYGMMKTKTGTTIRIVKNLRVCEDCHTATKLISEVY 598

Query: 682 NREIIARDRNRFHHFKDGNCSCNDYW 707
            RE I RDRNRFHHF++G CSC DYW
Sbjct: 599 GREFIVRDRNRFHHFRNGLCSCRDYW 624


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 274/682 (40%), Positives = 408/682 (59%), Gaps = 36/682 (5%)

Query: 30  NQPSLA-LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALL 85
           N+ SL+ +++ CT +++    K +H  +IK G     F+ + L+++ A    GDL+ A+ 
Sbjct: 257 NEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYA--KVGDLADAIS 314

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145
           VFE I++P+ V WN +I G  L      A++   +M                        
Sbjct: 315 VFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQM------------------------ 350

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
               +Q+H+ ++K+ +ESD FV   L++MY++   LE AR+ FN    +D +++ A+I+G
Sbjct: 351 ---KRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISG 407

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           Y+      +A  LF EM   +E    N++T+ T+L + A +  + +   V  L    G  
Sbjct: 408 YSQYWEDMEALSLFVEM--HKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFH 465

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
           S+++V N+LID Y KC  +  A  +FE     D++S+  MI  Y      +EAL LF +M
Sbjct: 466 SDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEM 525

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
               ++P+     S+L ACA L A + GK +H +I K    L+ +    SL++MYAKCG+
Sbjct: 526 QDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLD-IFAGNSLVNMYAKCGS 584

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           I  A + F  +  + + SW+AMI GLA HG   +AL LF++M+ EG+ P+ IT V VL A
Sbjct: 585 IDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGA 644

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           CNHAGL+   + YF +M + +   P  +HY CM+DLLGRAG  +EA  L+  M  + +A+
Sbjct: 645 CNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANAS 704

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
           +W +LLGA R+H  +ELG   A+ L  LEPE  G +VLL+N+YA AG+W++VA +R  + 
Sbjct: 705 VWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMR 764

Query: 566 DKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLY 625
           D  +KK PG S IEV   V+ FLVGD+ H +S+ IY  LDE+  L++K+G+VP     L+
Sbjct: 765 DSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLH 824

Query: 626 DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREI 685
           D+++  KE  L HHSEKLA+A+GLI+T  G  IR+ KNLRVC +CH+A K I KI +REI
Sbjct: 825 DVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREI 884

Query: 686 IARDRNRFHHFKDGNCSCNDYW 707
           I RD NRFHHFKDG+CSC DYW
Sbjct: 885 IVRDINRFHHFKDGSCSCGDYW 906



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 154/577 (26%), Positives = 268/577 (46%), Gaps = 81/577 (14%)

Query: 36  LLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LLS+C   ++++   Q+H+ I K+GL +     + LI +   S      YA  + +   E
Sbjct: 62  LLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINL--YSKCRXFGYARKLVDESSE 119

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
           P+ V W+ +I G++ +     A+  +  M L G   N +TF  +LK+C+ +  +  GKQ+
Sbjct: 120 PDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQV 179

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H  V+  G E D FV  +L+ MYA+  E   ++ +F++   R+ VS+ AL + Y    + 
Sbjct: 180 HGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFC 239

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
            +A  LF EM +      PNE ++ ++++AC  +     G  +   +   G   +    N
Sbjct: 240 GEAVGLFYEMVL--SGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSAN 297

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           AL+DMY+K GDL  A  +FE I++ D++SWN +I G      +++AL L  QM       
Sbjct: 298 ALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQM------- 350

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
                                + +H+ + K   + +++ +   L+DMY+KC  ++ A   
Sbjct: 351 --------------------KRQLHSSLMKMDME-SDLFVSVGLVDMYSKCDLLEDARMA 389

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F+ +  K L +WNA+ISG + + +  +ALSLF  M  EG+  +  T   +L +     ++
Sbjct: 390 FNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVV 449

Query: 453 DIGRQYFNAMIQD------YKISPKLQHYG------------------------CMVDLL 482
            + RQ     ++       Y ++  +  YG                         M+   
Sbjct: 450 HVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAY 509

Query: 483 GRAGLFDEAEAL---LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG 539
            + G  +EA  L   ++ ME+KPD  + +SLL AC      E G+ +  H+L+       
Sbjct: 510 AQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKY------ 563

Query: 540 AYVL-------LSNMYAGAGRWDDVATIRTRLNDKGM 569
            +VL       L NMYA  G  DD     + L ++G+
Sbjct: 564 GFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGI 600



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 113/345 (32%), Positives = 181/345 (52%), Gaps = 11/345 (3%)

Query: 126 FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR 185
           F P + ++  +L  C    ++  G QIHAH+ K GL  DP +   LIN+Y++      AR
Sbjct: 52  FTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYAR 111

Query: 186 LVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH 245
            + ++SS  D VS++ALI+GYA  G    A   F EM +       NE T  +VL AC+ 
Sbjct: 112 KLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLL--GVKCNEFTFSSVLKACSI 169

Query: 246 MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVM 305
           +  L +G  V  ++   G   ++ V N L+ MY+KC + + ++ LF+ I +R+V+SWN +
Sbjct: 170 VKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNAL 229

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365
              Y       EA+ LF +M+ S I+PN+ +  S++ AC  L     GK IH Y+ K   
Sbjct: 230 FSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGY 289

Query: 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
             +  S   +L+DMYAK G++  A  VF+ +    + SWNA+I+G  +H   ++AL L  
Sbjct: 290 DWDPFSA-NALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLG 348

Query: 426 RM--------IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           +M        +   ++ D    VG++   +   LL+  R  FN +
Sbjct: 349 QMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLL 393



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 151/300 (50%), Gaps = 15/300 (5%)

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
           I + NF P   +   +LS C    SL  G  + + I   GL  +  + N LI++YSKC  
Sbjct: 47  IDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRX 106

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
              AR L +   + D++SW+ +I GY        ALM F +M    ++ N+ TF SVL A
Sbjct: 107 FGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKA 166

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
           C+ +  L +GK +H  +  +  +  +V +  +L+ MYAKC     ++++FD +  + + S
Sbjct: 167 CSIVKDLRIGKQVHGVVVVSGFE-GDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVS 225

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
           WNA+ S         +A+ LF  M+  G++P++ +   +++AC   GL D  R     +I
Sbjct: 226 WNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT--GLRDSSR---GKII 280

Query: 464 QDYKISPKLQH------YGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
             Y I  KL +         +VD+  + G   +A ++ + ++ +PD   W +++  C +H
Sbjct: 281 HGYLI--KLGYDWDPFSANALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLH 337


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 276/709 (38%), Positives = 394/709 (55%), Gaps = 67/709 (9%)

Query: 63  FALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI 122
           F  + L+ + A S  G L  A +VF  + + + V W  +I G + S     A+K ++ M+
Sbjct: 282 FTWNSLLSLYAKS--GRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMV 339

Query: 123 LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELE 182
             GF P+ +T   +L SCA + A   G+++H  V+KLGL S   V  S++ MY + G+ E
Sbjct: 340 SEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAE 399

Query: 183 SARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE---------------- 226
           +AR VF +  +R   S+  +++ Y  +G ++ A  +F+ M  R                 
Sbjct: 400 TARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGL 459

Query: 227 --------------ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
                          +  P+  TV +VLSACA++  L++G  + S I   G+  +  + N
Sbjct: 460 DGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMN 519

Query: 273 ALIDMYSKCG---------------------------------DLVKARDLFESIEKRDV 299
           ALI  Y+K G                                 D  +AR++F+ +  RDV
Sbjct: 520 ALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDV 579

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
           I+W  MI GY       EA+ LFR M+    EPN  T  +VL ACA L  LD GK IH  
Sbjct: 580 IAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCK 639

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-KTLASWNAMISGLAMHGKAD 418
             ++ Q+  +VS+  ++I +YA+ G++  A +VFD + + K   +W +MI  +A HG  +
Sbjct: 640 AIRSLQE-QSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGE 698

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478
           +A+ LF  M+  G++PD IT+VGVLSAC HAG +D G++Y+  M  ++ I P++ HY CM
Sbjct: 699 QAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACM 758

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
           VDL  RAGL  EA   ++ M + PD  +W SLL ACRV    +L E  A  LL ++P N 
Sbjct: 759 VDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNS 818

Query: 539 GAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSK 598
           GAY  L+N+Y+  GRW+D A I     DKG+KK  G S   V   VH F   D +HPQ  
Sbjct: 819 GAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHPQRD 878

Query: 599 HIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTI 658
            IY    E+   ++K+GFVPD + VL+D+D+E KE  LS HSEKLAIA+GLIST   TT+
Sbjct: 879 SIYRKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTL 938

Query: 659 RIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           RI+KNLRVC +CH+A K ISK  +REII RD  RFHHF+DG CSC DYW
Sbjct: 939 RIMKNLRVCNDCHTAIKFISKFVDREIIVRDATRFHHFRDGYCSCKDYW 987



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 142/493 (28%), Positives = 218/493 (44%), Gaps = 107/493 (21%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGL------------------------------- 161
           +  +L+ C      S G+ IHAH +K GL                               
Sbjct: 212 YARLLQLCRTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLF 271

Query: 162 ------ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDA 215
                   + F   SL+++YA++G L  A +VF +   RDAVS+T +I G    G   DA
Sbjct: 272 DDIPYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDA 331

Query: 216 RQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALI 275
            + F +M    E F P++ T+  VLS+CA M +  +G  V   +   GL S + V N+++
Sbjct: 332 VKTFLDMV--SEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVL 389

Query: 276 DMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ-------- 327
            MY KCGD   AR +FE ++ R V SWNVM+  YTH    + A+ +F  M++        
Sbjct: 390 YMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNT 449

Query: 328 ------------------------SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK- 362
                                   S++EP+  T  SVL ACA L  L +GK +H+YI + 
Sbjct: 450 IIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRT 509

Query: 363 ----NHQKLN---------------------------NVSLWTSLIDMYAKCGNIKAAEQ 391
               + Q +N                           NV  +T+L++ Y K G+ K A +
Sbjct: 510 GMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQARE 569

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           +FD M  + + +W AMI G   +G+ D+A+ LF  MI  G +P+  T   VLSAC     
Sbjct: 570 IFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAY 629

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           LD G+Q     I+  +    +     ++ +  R+G    A  +   +  + +   WTS++
Sbjct: 630 LDYGKQIHCKAIRSLQ-EQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMI 688

Query: 512 GACRVHGRLELGE 524
            A   HG   LGE
Sbjct: 689 VAMAQHG---LGE 698



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 224/452 (49%), Gaps = 68/452 (15%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHN-------------------TQFALSKLIEICA 73
           +LS C  M+     ++VH  ++K GL +                   T  A+ + +++ +
Sbjct: 353 VLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRS 412

Query: 74  VSPF----------GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI- 122
           VS +          G +  A+ +FE + E + V WN II G++ +    +A+KF+ RM+ 
Sbjct: 413 VSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLS 472

Query: 123 LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELE 182
            S   P+ +T   +L +CA +  +  GKQ+H+++L+ G+     +  +LI+ YA++G +E
Sbjct: 473 ASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVE 532

Query: 183 SARLVFNKSSLRD--AVSYTALITGYASRGYLDDARQLFDEMPIRE-------------- 226
           +AR + +++ + D   +S+TAL+ GY   G    AR++FD M  R+              
Sbjct: 533 TARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQN 592

Query: 227 -------ENFV--------PNESTVVTVLSACAHMGSLELGNWV-CSLIEGHGLGSNLHV 270
                  E F         PN  T+  VLSACA +  L+ G  + C  I      S + V
Sbjct: 593 GQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQS-VSV 651

Query: 271 TNALIDMYSKCGDLVKARDLFESI-EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           +NA+I +Y++ G +  AR +F+ I  +++ I+W  MI         ++A++LF +M++  
Sbjct: 652 SNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVG 711

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           ++P+ +T++ VL ACA+ G +D GK  +  +   H  +  +S +  ++D++A+ G +  A
Sbjct: 712 VKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEA 771

Query: 390 EQVFDGMGYKT-LASWNAMISGLAMHGKADKA 420
            +    M        W ++++   +   AD A
Sbjct: 772 HEFIQRMPVAPDTVVWGSLLAACRVRKNADLA 803



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 106/458 (23%), Positives = 194/458 (42%), Gaps = 100/458 (21%)

Query: 35  ALLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVS---------------- 75
           ++LS C N++ +K   Q+HS I++TG+  +   ++ LI   A S                
Sbjct: 485 SVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVA 544

Query: 76  ---------------PFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVR 120
                            GD   A  +F+ +   + + W  +I G+  +     A++ +  
Sbjct: 545 DLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRS 604

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           MIL G  PN++T   +L +CA ++ +  GKQIH   ++   E    V  ++I +YA++G 
Sbjct: 605 MILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGS 664

Query: 181 LESARLVFNKSSLR-DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTV 239
           +  AR VF++   R + +++T++I   A  G  + A  LF+EM        P+  T V V
Sbjct: 665 VPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMV--RVGVKPDHITYVGV 722

Query: 240 LSACAHMGSLELGNWVCSLIEG-HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD 298
           LSACAH G ++ G      ++  HG+   +     ++D++++ G L +A +  + +    
Sbjct: 723 LSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMP--- 779

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC-----AYLGALDLG 353
                                          + P+ V + S+L AC     A L  L  G
Sbjct: 780 -------------------------------VAPDTVVWGSLLAACRVRKNADLAELAAG 808

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF-----DGMGYKTLASWNAMI 408
           K +   ID      +N   +++L ++Y+ CG    A +++      G+  +T  SW  + 
Sbjct: 809 KLLS--IDP-----HNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVR 861

Query: 409 SGLAMHGKAD-----------KALSLFSRMIGEGLQPD 435
             + + G  D           KA  ++  +   G  PD
Sbjct: 862 GKVHVFGADDVLHPQRDSIYRKAAEMWEEIKKAGFVPD 899


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 274/703 (38%), Positives = 394/703 (56%), Gaps = 123/703 (17%)

Query: 4   PPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQF 63
           P S+L  +P+ L  PP+S   + L             + ++  KQ+H+ IIKT  H+   
Sbjct: 65  PHSTLKFNPTPLQTPPTSPSQHDL-------------STLEQTKQIHAHIIKTHFHHA-- 109

Query: 64  ALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMIL 123
                ++I    P  D    L        P+   WN +I  ++  + P  A+  Y ++  
Sbjct: 110 -----LQI----PLNDFPSGL-------SPS-AQWNFVITSYTKRNQPRNALNVYAQLRK 152

Query: 124 SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELES 183
             F  + +  P +LK+C ++S    GK+IH  VLK GL+                     
Sbjct: 153 MDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLD--------------------- 191

Query: 184 ARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC 243
                     RD     AL+  Y     ++ AR +FD+M  R+                 
Sbjct: 192 ----------RDVFVGNALMLMYGECACVEYARLVFDKMMERD----------------- 224

Query: 244 AHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN 303
                  + +W+ +             T AL+DMY+KCG L  AR LF  + ++ V+SW 
Sbjct: 225 -------VVSWIPT-------------TTALLDMYAKCGHLGLARQLFNGLTQKTVVSWT 264

Query: 304 VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363
            MI G   ++  +E   LF +M + NI PN++T L                      +K 
Sbjct: 265 AMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITML----------------------NKE 302

Query: 364 HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSL 423
             +++ + L T+L+DMYAKCG+I AA ++F     + +  WNA+I+G AMHG  ++AL +
Sbjct: 303 RVEVDCI-LNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDI 361

Query: 424 FSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLG 483
           F+ M  +G++P+DITF+G+L AC+HAGL+  G++ F  M+  + + P+++HYGCMVDLLG
Sbjct: 362 FAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLG 421

Query: 484 RAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVL 543
           RAGL DEA  ++K+M +KP+  +W +L+ ACR+H   +LGE  A  LLE+EPEN G  VL
Sbjct: 422 RAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVL 481

Query: 544 LSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEM 603
           +SN+YA A RW D A +R  +   GMKK PG S IEV   VHEFL+GD+ HPQ + I EM
Sbjct: 482 MSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEM 541

Query: 604 LDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKN 663
           L E+   L ++G+VPDTS VL ++DEE KE AL++HSEKLA+A+GLIST P T IRIVKN
Sbjct: 542 LAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKN 601

Query: 664 LRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDY 706
           LRVC +CH+ATKL+SKI+ R II RDRNRFHHF++G CSC DY
Sbjct: 602 LRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDY 644


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 268/618 (43%), Positives = 380/618 (61%), Gaps = 43/618 (6%)

Query: 127 VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARL 186
           +P+  TF  +LK   K  ++++ KQIHA V+  GL  +  +   LI+ Y     L  AR+
Sbjct: 52  LPSHSTFVQLLK---KRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARI 108

Query: 187 VFNK-SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH 245
           VF++  SL   + +  +I  Y+      ++  LF +M         ++ T   V +AC+ 
Sbjct: 109 VFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSR 168

Query: 246 MGSLE-LGNWVCSLIEGHGLGSNLHVTNALIDMYS------------------------- 279
             +L   G  V  ++   G  S++ V N+L++MYS                         
Sbjct: 169 HPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTS 228

Query: 280 ------KCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-QSNIEP 332
                   G+LV+AR+LF+ +  R+ +SW VM+ GY     Y EAL  F  ML    ++P
Sbjct: 229 VVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKP 288

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN-NVSLWTSLIDMYAKCGNIKAAEQ 391
           N+   +S+L ACA+LGALD GKWIH YIDKN   L+ N+S  T+LIDMYAKCG I  A +
Sbjct: 289 NEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNIS--TALIDMYAKCGRIDCARR 346

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VFDG+  + L +W +MISGL+MHG   + L  FS M+ EG +PDDIT +GVL+ C+H+GL
Sbjct: 347 VFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGL 406

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           ++ G   F+ MI  + I PKL+HYGC++DLLGRAG  + A   +K+M M+PD   W +LL
Sbjct: 407 VEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALL 466

Query: 512 GACRVHGRLELGESVAKHLLELEP-ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
            ACR+HG ++LGE +  H+ EL P  + G YVLLSN+YA  G+W+ V  +R  ++ +G +
Sbjct: 467 SACRIHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSE 526

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE-KSGFVPDTSEVLYDMDE 629
             PGCS IE+  VVHEFL  DK+HP+   I + L+E+   +  + G+VP T +VL+D++E
Sbjct: 527 GCPGCSWIEIDGVVHEFLAADKLHPRISEINKKLNEVLRRISIEGGYVPSTKQVLFDLNE 586

Query: 630 EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
           E KE A+S HSEKLA+A+GL+ST+ G TIRI KNLR C +CHSA K IS +FNREI+ RD
Sbjct: 587 EDKEQAVSWHSEKLAVAFGLLSTQEG-TIRITKNLRTCEDCHSAMKTISLVFNREIVVRD 645

Query: 690 RNRFHHFKDGNCSCNDYW 707
           R+RFH F+ GNCSC DYW
Sbjct: 646 RSRFHTFRYGNCSCTDYW 663



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 133/439 (30%), Positives = 228/439 (51%), Gaps = 41/439 (9%)

Query: 17  FPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSP 76
           + PS    + L  +   + LL K  ++  IKQ+H+Q++  GL      L  LI     S 
Sbjct: 42  WEPSGTSSFSLPSHSTFVQLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIH----SY 97

Query: 77  FG--DLSYALLVFETIRE-PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG--FVPNTY 131
            G  +LS+A +VF+     P  +IWN +I+ +S + S   ++  + +M+  G     + Y
Sbjct: 98  IGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKY 157

Query: 132 TFPFILKSCAKISAI-SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK 190
           TF F+  +C++   +   G+ +H  V+K G ESD FV  SL+NMY+    +  A+ VF++
Sbjct: 158 TFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDE 217

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR------------------------- 225
              RD +++T+++ GYA RG L  AR+LFD MP R                         
Sbjct: 218 MPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCF 277

Query: 226 -----EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK 280
                 +   PNE+ +V++LSACAH+G+L+ G W+   I+ + +  + +++ ALIDMY+K
Sbjct: 278 NDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAK 337

Query: 281 CGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSV 340
           CG +  AR +F+ + KRD+++W  MI G +      E L  F +ML    +P+D+T L V
Sbjct: 338 CGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGV 397

Query: 341 LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT 400
           L  C++ G ++ G  I   +      +  +  +  LID+  + G +++A +    M  + 
Sbjct: 398 LNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEP 457

Query: 401 -LASWNAMISGLAMHGKAD 418
            + +W A++S   +HG  D
Sbjct: 458 DVVAWRALLSACRIHGDVD 476


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 257/666 (38%), Positives = 396/666 (59%), Gaps = 17/666 (2%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           + +H Q +  G  +     S ++++     F  +  A  VF+ + E + ++WN +I G+ 
Sbjct: 139 RVIHGQAVVDGCDSELLLGSNIVKM--YFKFWRVEDARKVFDRMPEKDTILWNTMISGYR 196

Query: 107 LSSSPVVAIKFYVRMILSGFVP-NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
            +   V +I+ +  +I       +T T   IL + A++  +  G QIH+   K G  S  
Sbjct: 197 KNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHD 256

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           +V T  I++Y++ G+++    +F +    D V+Y A+I GY S G  + +  LF E+ + 
Sbjct: 257 YVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLS 316

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL----HVTNALIDMYSKC 281
                   ST+V+++    H+        +   I G+ L SN      V+ AL  +YSK 
Sbjct: 317 GARL--RSSTLVSLVPVSGHL-------MLIYAIHGYCLKSNFLSHASVSTALTTVYSKL 367

Query: 282 GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
            ++  AR LF+   ++ + SWN MI GYT     ++A+ LFR+M +S   PN VT   +L
Sbjct: 368 NEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCIL 427

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
            ACA LGAL LGKW+H  +     + +++ + T+LI MYAKCG+I  A ++FD M  K  
Sbjct: 428 SACAQLGALSLGKWVHDLVRSTDFE-SSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNE 486

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
            +WN MISG  +HG+  +AL++F  M+  G+ P  +TF+ VL AC+HAGL+  G + FN+
Sbjct: 487 VTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNS 546

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
           MI  Y   P ++HY CMVD+LGRAG    A   ++ M ++P +++W +LLGACR+H    
Sbjct: 547 MIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTN 606

Query: 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
           L  +V++ L EL+P+N G +VLLSN+++    +   AT+R     + + K PG + IE+G
Sbjct: 607 LARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIG 666

Query: 582 SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
              H F  GD+ HPQ K IYE L++++  + ++G+ P+T   L+D++EE +E  +  HSE
Sbjct: 667 ETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSE 726

Query: 642 KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
           +LAIA+GLI+T+PGT IRI+KNLRVC +CH+ TKLISKI  R I+ RD NRFHHFKDG C
Sbjct: 727 RLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVC 786

Query: 702 SCNDYW 707
           SC DYW
Sbjct: 787 SCGDYW 792



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 136/501 (27%), Positives = 255/501 (50%), Gaps = 10/501 (1%)

Query: 20  SSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGD 79
           +++    L+     L    + T++ ++ Q H+QII  G  N    L+KL +   +S  G 
Sbjct: 10  TAETTAALISKNTYLDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQ--RLSDLGA 67

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILS-GFVPNTYTFPFILK 138
           + YA  +F +++ P+  ++N ++RG S++ SP  ++  +  +  S    PN+ T+ F + 
Sbjct: 68  IYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAIS 127

Query: 139 SCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVS 198
           + +       G+ IH   +  G +S+  + ++++ MY +   +E AR VF++   +D + 
Sbjct: 128 AASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTIL 187

Query: 199 YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           +  +I+GY       ++ Q+F ++ I E     + +T++ +L A A +  L LG  + SL
Sbjct: 188 WNTMISGYRKNEMYVESIQVFRDL-INESCTRLDTTTLLDILPAVAELQELRLGMQIHSL 246

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
               G  S+ +V    I +YSKCG +     LF    K D++++N MI GYT   + + +
Sbjct: 247 ATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELS 306

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
           L LF++++ S       T +S++P     G L L   IH Y  K++  L++ S+ T+L  
Sbjct: 307 LSLFKELMLSGARLRSSTLVSLVPVS---GHLMLIYAIHGYCLKSN-FLSHASVSTALTT 362

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
           +Y+K   I++A ++FD    K+L SWNAMISG   +G  + A+SLF  M      P+ +T
Sbjct: 363 VYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVT 422

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
              +LSAC   G L +G+ + + +++       +     ++ +  + G   EA  L   M
Sbjct: 423 ITCILSACAQLGALSLGK-WVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLM 481

Query: 499 EMKPDAAIWTSLLGACRVHGR 519
             K +   W +++    +HG+
Sbjct: 482 -TKKNEVTWNTMISGYGLHGQ 501



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 127/476 (26%), Positives = 203/476 (42%), Gaps = 45/476 (9%)

Query: 129 NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF 188
           NTY   F  +S    ++IS   Q HA ++  G  +D  + T L    +  G +  AR +F
Sbjct: 21  NTY-LDFFKRS----TSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIF 75

Query: 189 NKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS 248
                 D   +  L+ G++       +  +F  +  +  +  PN ST    +SA +    
Sbjct: 76  LSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLR-KSTDLKPNSSTYAFAISAASGFRD 134

Query: 249 LELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGG 308
              G  +       G  S L + + ++ MY K   +  AR +F+ + ++D I WN MI G
Sbjct: 135 DRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISG 194

Query: 309 YTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
           Y     Y E++ +FR ++ +S    +  T L +LPA A L  L LG  IH+   K     
Sbjct: 195 YRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYS 254

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
           ++  L T  I +Y+KCG IK    +F       + ++NAMI G   +G+ + +LSLF  +
Sbjct: 255 HDYVL-TGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKEL 313

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQY----------------------FNAMIQD 465
           +  G +    T V ++    H  L+     Y                       N +   
Sbjct: 314 MLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESA 373

Query: 466 YKI---SPK--LQHYGCMVDLLGRAGLFDEAEALLKTM---EMKPDAAIWTSLLGACRVH 517
            K+   SP+  L  +  M+    + GL ++A +L + M   E  P+    T +L AC   
Sbjct: 374 RKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQL 433

Query: 518 GRLELGESVAKHLLELEPENPGAYV--LLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
           G L LG+ V   +   + E+   YV   L  MYA  G    +A  R RL D   KK
Sbjct: 434 GALSLGKWVHDLVRSTDFES-SIYVSTALIGMYAKCG---SIAEAR-RLFDLMTKK 484


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/605 (43%), Positives = 378/605 (62%), Gaps = 7/605 (1%)

Query: 103 RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE 162
           RG S+ S+ +   +F   +  S F  N++ +   L+ C +    S GK +H  +LK G  
Sbjct: 14  RGFSVQSAKLTQ-EFVGHVSPSEF--NSHAYANALQDCIQKDEPSRGKGLHCEILKRGGC 70

Query: 163 SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
            D F    L+NMY ++  L  A  +F++   R+ +S+  LI GYA      +A +LF  +
Sbjct: 71  LDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRL 130

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
                  +PN+ T  +VL ACA M  L LGN +   +   GL S++ V+NAL+D+Y+KCG
Sbjct: 131 ---HREVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCG 187

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
            +  + +LF     R+ ++WN +I G+    D ++AL LF  ML+  ++  +VT+ S L 
Sbjct: 188 RMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALR 247

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           ACA L AL+ G  IH+   K      ++ +  +LIDMYAKCG+IK A  VFD M  +   
Sbjct: 248 ACASLAALEPGLQIHSLTVKTTFD-KDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEV 306

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           SWNAMISG +MHG   +AL +F +M    ++PD +TFVGVLSAC +AGLLD G+ YF +M
Sbjct: 307 SWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSM 366

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
           IQD+ I P ++HY CMV LLGR G  D+A  L+  +  +P   +W +LLGAC +H  +EL
Sbjct: 367 IQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIEL 426

Query: 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582
           G   A+ +LE+EP++   +VLLSNMYA A RWD+VA++R  +  KG+KK PG S IE   
Sbjct: 427 GRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQG 486

Query: 583 VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEK 642
            VH F VGD  HP+ + I  ML+ +    +K+G++P+ + VL D+++E KE  L  HSE+
Sbjct: 487 TVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSER 546

Query: 643 LAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCS 702
           LA+++G+I T  G+ IRI+KNLR+C +CH+A K ISK+  REI+ RD NRFHHF++G CS
Sbjct: 547 LALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCS 606

Query: 703 CNDYW 707
           C DYW
Sbjct: 607 CGDYW 611



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 219/391 (56%), Gaps = 8/391 (2%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K +H +I+K G     FA + L+ +   S F  L  A  +F+ + E N + +  +I+G++
Sbjct: 58  KGLHCEILKRGGCLDLFAWNILLNMYVKSDF--LCDASKLFDEMPERNTISFVTLIQGYA 115

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            S   + AI+ +VR+     +PN +TF  +L++CA +  ++ G QIH HV+K+GL SD F
Sbjct: 116 ESVRFLEAIELFVRL-HREVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVF 174

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V  +L+++YA+ G +E++  +F +S  R+ V++  +I G+   G  + A +LF  + + E
Sbjct: 175 VSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLF--LNMLE 232

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
                 E T  + L ACA + +LE G  + SL        ++ VTNALIDMY+KCG +  
Sbjct: 233 YRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKD 292

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           AR +F+ + K+D +SWN MI GY+     +EAL +F +M ++ ++P+ +TF+ VL ACA 
Sbjct: 293 ARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACAN 352

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWN 405
            G LD G+     + ++H     +  +T ++ +  + G++  A ++ D + ++ ++  W 
Sbjct: 353 AGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWR 412

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           A++    +H   D  L   S      ++P D
Sbjct: 413 ALLGACVIHN--DIELGRISAQRVLEMEPQD 441



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 169/315 (53%), Gaps = 12/315 (3%)

Query: 26  KLLQNQPSLA-LLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLS 81
           ++L NQ + A +L  C  M+ +    Q+H  +IK GLH+  F  + L+++ A    G + 
Sbjct: 133 EVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYA--KCGRME 190

Query: 82  YALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCA 141
            ++ +F      N V WN +I GH        A++ ++ M+         T+   L++CA
Sbjct: 191 NSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACA 250

Query: 142 KISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTA 201
            ++A+  G QIH+  +K   + D  V  +LI+MYA+ G ++ ARLVF+  + +D VS+ A
Sbjct: 251 SLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNA 310

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN-WVCSLIE 260
           +I+GY+  G   +A ++FD+M  +E    P++ T V VLSACA+ G L+ G  +  S+I+
Sbjct: 311 MISGYSMHGLGREALRIFDKM--QETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQ 368

Query: 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEAL 319
            HG+   +     ++ +  + G L KA  L + I  +  V+ W  ++G     +D +   
Sbjct: 369 DHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGR 428

Query: 320 MLFRQMLQSNIEPND 334
           +  +++L+  +EP D
Sbjct: 429 ISAQRVLE--MEPQD 441


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 264/647 (40%), Positives = 394/647 (60%), Gaps = 46/647 (7%)

Query: 104 GHSLSSSPVVAIKFYVRMILSGFVP----NTYTFPFILKSCAK---ISAISEGKQI---- 152
           G+S    P  ++ F   +  SG  P    N+ + P  LKS  +   IS +   K I    
Sbjct: 7   GNSTMPCPYASMTFAASLPFSGPSPKPHPNSNSNPKSLKSLDQKQIISLLQRSKHINQVL 66

Query: 153 --HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
             HA +++ G   DPF+   L+   ++   ++ A  +F  +   +   YTALI G+ S G
Sbjct: 67  PIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSG 126

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
              DA QL+  M    ++ +P+   + ++L AC    +L  G  V S     GL SN  V
Sbjct: 127 NYFDAIQLYSRML--HDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLV 184

Query: 271 TNALIDMYSKCGDLVKARDLFES------------------------------IEKRDVI 300
              ++++Y KCG+L  AR +FE                               + ++D +
Sbjct: 185 RLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTV 244

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
            W  MI G+    +   AL  FR M   N+ PN+ T + VL AC+ LGAL++G+W+H+Y+
Sbjct: 245 CWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYM 304

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
            K   +LN + +  +LI+MY++CG+I  A+ VFD M  + + ++N MISGL+M+GK+ +A
Sbjct: 305 RKFEIELN-LFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQA 363

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
           + LF  MIG  L+P ++TFVGVL+AC+H GL+D G + F++M +DY + P+++HYGCMVD
Sbjct: 364 IELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVD 423

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540
           LLGR G  +EA  L++TM+M PD  +  +LL AC++H  LELGE VAK L +    + G 
Sbjct: 424 LLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGT 483

Query: 541 YVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHI 600
           YVLLS++YA +G+W + A +R ++ + GM+K PGCSSIEV + +HEFL+GD  HP+ + I
Sbjct: 484 YVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERI 543

Query: 601 YEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRI 660
           YE L+E++ LL   G+ P+   VL D+++  KE AL+ HSE+LAI YGLIST+P T IR+
Sbjct: 544 YEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGLISTEPCTVIRV 603

Query: 661 VKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +KNLRVC +CHSA KLI+KI  R+++ RDRNRFH+F++G CSC DYW
Sbjct: 604 MKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 650



 Score =  224 bits (572), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/481 (28%), Positives = 243/481 (50%), Gaps = 47/481 (9%)

Query: 1   MALPPSSLTLSPSILHFPPSSDP---------PYKLLQNQPSLALLSKCTNMQNIKQVHS 51
           M  P +S+T + S+    PS  P           K L  +  ++LL +  ++  +  +H+
Sbjct: 11  MPCPYASMTFAASLPFSGPSPKPHPNSNSNPKSLKSLDQKQIISLLQRSKHINQVLPIHA 70

Query: 52  QIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSP 111
           Q+I+ G     F + +L+  C  S    + YA  +F+    PN  ++  +I G   S + 
Sbjct: 71  QLIRNGHSQDPFMVFELLRSC--SKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNY 128

Query: 112 VVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSL 171
             AI+ Y RM+    +P+ Y    ILK+C    A+ EG+++H+  LKLGL S+  V   +
Sbjct: 129 FDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRI 188

Query: 172 INMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE----- 226
           + +Y + GEL  AR VF +    D V+ T +I+ Y+ +G +++A  +F  +  ++     
Sbjct: 189 MELYGKCGELGDARRVFEEMP-EDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWT 247

Query: 227 ------------------------ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
                                   EN  PNE T+V VLSAC+ +G+LE+G WV S +   
Sbjct: 248 AMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKF 307

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
            +  NL V NALI+MYS+CG + +A+ +F+ ++ RDVI++N MI G +     ++A+ LF
Sbjct: 308 EIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELF 367

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
           R M+   + P +VTF+ VL AC++ G +D G  I   + +++     +  +  ++D+  +
Sbjct: 368 RVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGR 427

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSL---FSRMIGEGLQPDDITF 439
            G +   E+ +D +    +   + M+  L    K  K L L    ++++ +  Q D  T+
Sbjct: 428 VGRL---EEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTY 484

Query: 440 V 440
           V
Sbjct: 485 V 485


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 266/660 (40%), Positives = 392/660 (59%), Gaps = 34/660 (5%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           +H+ I K G  +  F  + LI+  A S  G +  A  VF+ I   + V W  ++   + +
Sbjct: 161 IHACIFKLGHESNAFVGTALID--AYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAEN 218

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVH 168
                A+K + +M + GF PN +TF  + K+C  + A   GK +H   LK   E D +V 
Sbjct: 219 DCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVG 278

Query: 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
            +L+++Y ++G+++ AR  F +   +D + ++ +I  YA      +A ++F +M  R+  
Sbjct: 279 VALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQM--RQAL 336

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288
            +PN+ T  +VL ACA M  L LGN +   +   GL S++ V+NAL+D+Y+KCG +  + 
Sbjct: 337 VLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSM 396

Query: 289 DLF-ESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347
            LF ES  + DV  WN +I G+    D ++AL LF  ML+  ++  +VT+ S L ACA L
Sbjct: 397 XLFAESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASL 456

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
            AL+ G  IH+   K      ++ +  +LIDMYAKCG+IK A  VFD M  +   SWNAM
Sbjct: 457 AALEPGLQIHSLTVKTTFD-KDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAM 515

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           ISG +MHG A                            C +AGLLD G+ YF +MIQD+ 
Sbjct: 516 ISGYSMHGLA----------------------------CANAGLLDQGQAYFTSMIQDHG 547

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
           I P ++HY CMV LLGR G  D+A  L+  +  +P   +W +LLGAC +H  +ELG   A
Sbjct: 548 IEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISA 607

Query: 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF 587
           +H+LE+EP++   +VLLSNMYA A RWD+VA++R  +  KG+KK PG S IE    VH F
Sbjct: 608 QHVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSF 667

Query: 588 LVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAY 647
            VGD  HP+ + I  ML+ +    +K+G++P+ + VL D+++E KE  L  HSE+LA+++
Sbjct: 668 TVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSF 727

Query: 648 GLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           G+I T  G+ IRI+KNLR+C +CH+A K ISK+  REI+ RD NRFHHF++G CSC DYW
Sbjct: 728 GIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 787



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 124/422 (29%), Positives = 207/422 (49%), Gaps = 12/422 (2%)

Query: 103 RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE 162
           RG S+ S+ +   +F   +  S F  N++ +   L+ C +    S GK +H  +LK G  
Sbjct: 14  RGFSVQSAKLTQ-EFVGHVSPSEF--NSHAYANALQDCIQKDEPSRGKGLHCEILKRGGC 70

Query: 163 SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
            D F    L+NMY ++  L  A  +F++   R+ +S+  LI GYA      +A +LF  +
Sbjct: 71  LDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELF--V 128

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
            +  E    N     T+L     M   ELG  + + I   G  SN  V  ALID YS CG
Sbjct: 129 RLHREGHELNPFVFTTILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCG 188

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
            +  AR++F+ I  +D++SW  M+  +     +KEAL LF QM     +PN+ TF SV  
Sbjct: 189 RVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFK 248

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           AC  L A D+GK +H    K+  +L ++ +  +L+D+Y K G+I  A   F+ +  K + 
Sbjct: 249 ACLGLEAFDVGKSVHGCALKSRYEL-DLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVI 307

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
            W+ MI+  A   ++ +A+ +F +M    + P+  TF  VL AC     L++G Q    +
Sbjct: 308 PWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHV 367

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
           I+   +   +     ++D+  + G  + +  L      + D   W ++     + G ++L
Sbjct: 368 IK-IGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTV-----IVGHVQL 421

Query: 523 GE 524
           G+
Sbjct: 422 GD 423


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 268/665 (40%), Positives = 398/665 (59%), Gaps = 9/665 (1%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +QVH   I+TGL++ + A+   + I   +  GD+ +A  VF  + + + V WN++I G  
Sbjct: 122 RQVHGYAIRTGLNDAKVAVGNGL-INMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLD 180

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +     A+K Y  M  +G +P+ +     L SCA +  I  G+Q H   +KLGL+ D  
Sbjct: 181 QNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVS 240

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY-LDDARQLFDEMPIR 225
           V  +L+ +YA+   L   + VF+    RD VS+  +I   A  G  + +A ++F EM   
Sbjct: 241 VSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEM--M 298

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
              + PN  T + +L+  + + + +L + + +LI  + +  +  + NAL+  Y K G++ 
Sbjct: 299 RAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEME 358

Query: 286 KARDLFESI-EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
              ++F  + E+RD +SWN MI GY H     +A+ L   M+Q     +  TF +VL AC
Sbjct: 359 NCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSAC 418

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
           A +  L+ G  +HA   +   + ++V + ++L+DMY+KCG I  A + F+ M  + L SW
Sbjct: 419 ATVATLECGMEVHACAIRACLE-SDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSW 477

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
           N+MISG A HG  D AL LF+RM   G  PD ITFVGVLSAC+H GL+D G +YF +M +
Sbjct: 478 NSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTE 537

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA-CRVHGR-LEL 522
            Y + P+++HY CMVDLLGRAG  D+ E  +  M +KP+  IW ++LGA CR +GR  EL
Sbjct: 538 VYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRGNGRKTEL 597

Query: 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582
           G   A+ L  ++P+N   YVLLSNMYA  G+W+D+A  R  + +  +KK  GCS + +  
Sbjct: 598 GRRAAEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKD 657

Query: 583 VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEK 642
            VH F+ GD  HP+   IY  L E+D  +  +G+VP     LYD++ E KE  LS+HSEK
Sbjct: 658 GVHVFVAGDNSHPEKGLIYAKLKELDKKIRDAGYVPQIKFALYDLEPENKEELLSYHSEK 717

Query: 643 LAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCS 702
           LA+A+ +++   G  IRI+KNLRVCG+CHSA K ISK+ +R I+ RD NRFHHF+DG CS
Sbjct: 718 LAVAF-VLTRNSGLPIRIMKNLRVCGDCHSAFKYISKVVDRSIVLRDSNRFHHFEDGKCS 776

Query: 703 CNDYW 707
           C DYW
Sbjct: 777 CRDYW 781



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 134/473 (28%), Positives = 239/473 (50%), Gaps = 11/473 (2%)

Query: 50  HSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSS 109
           H  ++K G  +  F  + LI +      GD   A  +F+ + + N V W  +I G++ + 
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINV--YVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNG 80

Query: 110 SPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK-ISAISEGKQIHAHVLKLGL-ESDPFV 167
            P  A      MI  GF+PN + F   +++C + +    +G+Q+H + ++ GL ++   V
Sbjct: 81  MPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAV 140

Query: 168 HTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREE 227
              LINMYA+ G+++ AR VF     +D+VS+ ++ITG       +DA + ++ M  R+ 
Sbjct: 141 GNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSM--RKT 198

Query: 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA 287
             +P+   +++ LS+CA +G + LG          GL  ++ V+N L+ +Y++   L + 
Sbjct: 199 GLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAEC 258

Query: 288 RDLFESIEKRDVISWNVMIGGYTHT-SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           + +F  + +RD +SWN +IG    + +   EA+ +F +M+++   PN VTF+++L   + 
Sbjct: 259 QKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSS 318

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG-YKTLASWN 405
           L    L   IHA I K + K +N ++  +L+  Y K G ++  E++F  M   +   SWN
Sbjct: 319 LSTSKLSHQIHALILKYNVKDDN-AIENALLACYGKSGEMENCEEIFSRMSERRDEVSWN 377

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
           +MISG   +    KA+ L   M+  G + D  TF  VLSAC     L+ G +     I+ 
Sbjct: 378 SMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRA 437

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
             +   +     +VD+  + G  D A      M ++ +   W S++     HG
Sbjct: 438 C-LESDVVIGSALVDMYSKCGRIDYASRFFNLMPVR-NLYSWNSMISGYARHG 488



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 106/363 (29%), Positives = 184/363 (50%), Gaps = 7/363 (1%)

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
            H +VLK G +SD F+  +LIN+Y + G+  SAR +F++   R+ V++  LI+GY   G 
Sbjct: 22  FHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGM 81

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAH-MGSLELGNWVCSLIEGHGLG-SNLH 269
            +DA  +  EM    E F+PN     + + AC   M     G  V       GL  + + 
Sbjct: 82  PEDACGVLKEMIF--EGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVA 139

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           V N LI+MY+KCGD+  AR +F  +  +D +SWN MI G      +++A+  +  M ++ 
Sbjct: 140 VGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTG 199

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           + P++   +S L +CA LG + LG+  H    K    + +VS+  +L+ +YA+   +   
Sbjct: 200 LMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDM-DVSVSNTLLALYAETSRLAEC 258

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKA-DKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           ++VF  M  +   SWN +I  LA  G +  +A+ +F  M+  G  P+ +TF+ +L+  + 
Sbjct: 259 QKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSS 318

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
                +  Q  +A+I  Y +         ++   G++G  +  E +   M  + D   W 
Sbjct: 319 LSTSKLSHQ-IHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWN 377

Query: 509 SLL 511
           S++
Sbjct: 378 SMI 380


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 246/565 (43%), Positives = 359/565 (63%), Gaps = 3/565 (0%)

Query: 143  ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
            IS  S  K+ HA +   GL+ D  + T    MY     +++A +VF       +  +  +
Sbjct: 730  ISCFSCLKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVM 789

Query: 203  ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
            I G+A+ G    + +L+ +M   E+   P++      L +CA +  L+ G  +   +   
Sbjct: 790  IRGFATDGRFLSSLELYSKM--MEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCC 847

Query: 263  GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
            G  ++L V  AL+DMY+KCGD+  AR +F+ +  RD++SW  MI GY H     E L  F
Sbjct: 848  GCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFF 907

Query: 323  RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
              M  S + PN V+ LSVL AC  LGAL  G+W H+Y+ +   + + + + T+++DMY+K
Sbjct: 908  DLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFD-ILVATAIMDMYSK 966

Query: 383  CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
            CG++  A  +FD    K L  W+AMI+   +HG   KA+ LF +M+  G++P  +TF  V
Sbjct: 967  CGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCV 1026

Query: 443  LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
            LSAC+H+GLL+ G+ YF  M +++ I+ KL +Y CMVDLLGRAG   EA  L++ M ++P
Sbjct: 1027 LSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEP 1086

Query: 503  DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562
            DA+IW SLLGACR+H  L+L E +A HL  L+P + G +VLLSN+YA   RW++V  +R 
Sbjct: 1087 DASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRK 1146

Query: 563  RLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSE 622
             +  +G  K+ G S +E  + VH+F VGD+ HPQ + +Y  L+E+ A ++  G+VP T  
Sbjct: 1147 MMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDF 1206

Query: 623  VLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFN 682
            VL+D++EE KE ALS+HSE+LAIA+GLI+T PGTT+RI KNLR+CG+CH+A KLISKI N
Sbjct: 1207 VLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVN 1266

Query: 683  REIIARDRNRFHHFKDGNCSCNDYW 707
            R I+ RD +RFH F+DG CSC DYW
Sbjct: 1267 RVILVRDMHRFHRFEDGVCSCGDYW 1291



 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/599 (34%), Positives = 355/599 (59%), Gaps = 16/599 (2%)

Query: 63  FALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI 122
           F  S L+E+   S  G +  AL VFE  + P+ V+W +++ G+  ++ P  A+  + +M+
Sbjct: 140 FVGSALVEL--YSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMV 197

Query: 123 L-SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGEL 181
           +    V +  T   ++ +CA++  +  G  +H  V++   + D  +  SL+N+YA+ G  
Sbjct: 198 MMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCE 257

Query: 182 ESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLS 241
           + A  +F+K   +D +S++ +I  YA+    ++A  LF EM   E+ F PN  TVV+ L 
Sbjct: 258 KIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMI--EKRFEPNSVTVVSALQ 315

Query: 242 ACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVIS 301
           ACA   +LE G  +  +    G   +  V+ ALIDMY KC    +A DLF+ + K+DV+S
Sbjct: 316 ACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVS 375

Query: 302 WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361
           W  ++ GY       +++ +FR ML   I+P+ V  + +L A + LG       +H Y+ 
Sbjct: 376 WVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVV 435

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421
           ++    +NV +  SLI++Y+KCG++  A ++F GM  + +  W++MI+   +HG+  +AL
Sbjct: 436 RSGFN-SNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEAL 494

Query: 422 SLFSRMIGEG-LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
            +F +M+    ++P+++TF+ +LSAC+HAGL++ G + F+ M+ DY++ P  +H+G MVD
Sbjct: 495 EIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVD 554

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540
           LLGR G   +A  ++  M +     +W +LLGACR+H  +E+GE+ AK+L  L+P + G 
Sbjct: 555 LLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGY 614

Query: 541 YVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHI 600
           Y+LLSN+YA  G+WD+VA +RTR+ ++G+KK+ G S +EV   VH FL  D+ HP S+ I
Sbjct: 615 YILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKI 674

Query: 601 YEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIA---YGLISTKPGT 656
           YE+L +++A + K  ++PD   +L+D       GA+    +++      Y  I + PGT
Sbjct: 675 YELLRKLEAQMGKEVYIPDLDFLLHD------TGAVLQFWQRIKATESKYKTIGSAPGT 727



 Score =  246 bits (627), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 166/524 (31%), Positives = 278/524 (53%), Gaps = 19/524 (3%)

Query: 31  QPSLALLSKCTNMQNIKQVHSQIIKTG-LHNTQFA--LSKLIEICAVSPFGDLSYALLVF 87
           Q  + L   C N +++ Q+HSQ+ KTG LH+T FA  L+ L   CA      L  A  VF
Sbjct: 5   QVLVDLFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCA-----SLQAARKVF 59

Query: 88  ETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILS-GFVPNTYTFPFILKSCAKISAI 146
           +    PN  +WN+ +R +         ++ +  MI + G  P+ +T P  LK+CA +  +
Sbjct: 60  DETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRML 119

Query: 147 SEGKQIHAHVLKLG-LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
             GK IH    K   + SD FV ++L+ +Y++ G++  A  VF +    D V +T+++TG
Sbjct: 120 ELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTG 179

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           Y      ++A  LF +M +  +  V +  T+V+V+SACA + +++ G+ V  L+      
Sbjct: 180 YQQNNDPEEALALFSQM-VMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFD 238

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
            +L + N+L+++Y+K G    A +LF  + ++DVISW+ MI  Y +     EAL LF +M
Sbjct: 239 GDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEM 298

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
           ++   EPN VT +S L ACA    L+ GK IH        +L + S+ T+LIDMY KC  
Sbjct: 299 IEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFEL-DFSVSTALIDMYMKCSC 357

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
              A  +F  +  K + SW A++SG A +G A K++ +F  M+ +G+QPD +  V +L+A
Sbjct: 358 PDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAA 417

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
            +  G+          +++    +  +     +++L  + G   +A  L K M ++ D  
Sbjct: 418 SSELGIFQQALCLHGYVVRS-GFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR-DVV 475

Query: 506 IWTSLLGACRVHGR----LELGESVAKHLLELEPENPGAYVLLS 545
           IW+S++ A  +HGR    LE+ + + K+   + P N     +LS
Sbjct: 476 IWSSMIAAYGIHGRGGEALEIFDQMVKN-STVRPNNVTFLSILS 518



 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 135/402 (33%), Positives = 224/402 (55%), Gaps = 8/402 (1%)

Query: 20   SSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGD 79
            +++  YK + + P    +S C     +K+ H++I   GL      L+K   I  VS F  
Sbjct: 713  ATESKYKTIGSAPGTDTIS-C--FSCLKKTHAKIFAYGLQYDSRILTKF-AIMYVS-FNR 767

Query: 80   LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKS 139
            +  A +VFE I  P   +WN +IRG +     + +++ Y +M+  G  P+ + FPF LKS
Sbjct: 768  IDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKS 827

Query: 140  CAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSY 199
            CA +S +  GK IH H++  G  +D FV  +L++MYA+ G++E+ARLVF+K ++RD VS+
Sbjct: 828  CAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSW 887

Query: 200  TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
            T++I+GYA  GY  +    FD M  R    +PN  ++++VL AC ++G+L  G W  S +
Sbjct: 888  TSMISGYAHNGYNSETLGFFDLM--RSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYV 945

Query: 260  EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEAL 319
               G   ++ V  A++DMYSKCG L  AR LF+    +D++ W+ MI  Y      ++A+
Sbjct: 946  IQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAI 1005

Query: 320  MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
             LF QM+++ + P+ VTF  VL AC++ G L+ GK     + +       +S +  ++D+
Sbjct: 1006 DLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDL 1065

Query: 380  YAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHGKADKA 420
              + G +  A  + + M  +  AS W +++    +H   D A
Sbjct: 1066 LGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLA 1107


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 255/676 (37%), Positives = 394/676 (58%), Gaps = 8/676 (1%)

Query: 35  ALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
            +L  C N  ++++   +H+  +++G    +F    L+++   S  G +  AL VF  IR
Sbjct: 56  TVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDM--YSKCGTVYDALKVFTKIR 113

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
            P+ V W+ +I G         A + +  M   G  PN +T   ++ +   +  +  G+ 
Sbjct: 114 NPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQS 173

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IH  + K G ESD  V   LI MY ++  +E    VF   +  D VS+ AL++G+     
Sbjct: 174 IHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQT 233

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
                ++F +M +  E F PN  T ++VL +C+ +   E G  V + I  +    +  V 
Sbjct: 234 CGRGPRIFYQMLL--EGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVG 291

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
            AL+DMY+K   L  A   F+ +  RD+ SW V+I GY  T   ++A+  FRQM +  I+
Sbjct: 292 TALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIK 351

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           PN+ T  S L  C+++  L+ G+ +HA   K      ++ + ++L+D+Y KCG ++ AE 
Sbjct: 352 PNEYTLASCLSGCSHMATLENGRQLHAVAVKAGH-FGDIFVGSALVDLYGKCGCMEHAEA 410

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           +F G+  + + SWN +ISG + HG+ +KAL  F  M+ EG+ PD+ TF+GVLSAC+  GL
Sbjct: 411 IFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGL 470

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           ++ G++ F++M + Y I+P ++HY CMVD+LGRAG F+E +  ++ M + P + IW ++L
Sbjct: 471 VEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVL 530

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
           GAC++HG ++ GE  AK L E+EP    +Y+LLSN++A  GRWDDV  IR  +  +G+KK
Sbjct: 531 GACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKK 590

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
            PGCS +EV   VH FL  D  HP+ + IY  LD++   L   G+VP T  VL+++  + 
Sbjct: 591 EPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLDKLGQSLMSIGYVPKTEVVLHNVSNKE 650

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           K   L +HSE+LA+++ L+ST     IRI KNLR+C +CH   KLIS I N+EI+ RD  
Sbjct: 651 KMEHLYYHSERLALSFALLSTNAVKPIRIFKNLRICEDCHDFMKLISDITNQEIVVRDIR 710

Query: 692 RFHHFKDGNCSCNDYW 707
           RFHHFK G CSC D W
Sbjct: 711 RFHHFKRGTCSCQDRW 726



 Score =  233 bits (594), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 141/448 (31%), Positives = 236/448 (52%), Gaps = 17/448 (3%)

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKS 139
           +  A  +F  + E N V WN ++ G++        +K + +M       + +T   +LK 
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 140 CAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSY 199
           CA   ++ EGK +HA  L+ G E D F+  SL++MY++ G +  A  VF K    D V++
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
           +A+ITG   +G+  +A +LF  M  R +   PN+ T+ +++S   +MG L  G  +   I
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLM--RRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCI 178

Query: 260 EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEAL 319
             +G  S+  V+N LI MY K   +     +FE++   D++SWN ++ G+  +       
Sbjct: 179 CKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGP 238

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
            +F QML    +PN  TF+SVL +C+ L   + GK +HA+I KN    ++  + T+L+DM
Sbjct: 239 RIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDF-VGTALVDM 297

Query: 380 YAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439
           YAK   ++ A   FD +  + + SW  +ISG A   +A+KA+  F +M  EG++P++ T 
Sbjct: 298 YAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTL 357

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG------CMVDLLGRAGLFDEAEA 493
              LS C+H   L+ GRQ        + ++ K  H+G       +VDL G+ G  + AEA
Sbjct: 358 ASCLSGCSHMATLENGRQL-------HAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEA 410

Query: 494 LLKTMEMKPDAAIWTSLLGACRVHGRLE 521
           + K + +  D   W +++     HG+ E
Sbjct: 411 IFKGL-ISRDIVSWNTIISGYSQHGQGE 437



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 107/369 (28%), Positives = 175/369 (47%), Gaps = 14/369 (3%)

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
           +E A  +F     ++ VS+ AL+ GYA  G      +LF +M   E  F  ++ T+ TVL
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKF--SKFTLSTVL 58

Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVI 300
             CA+ GSL  G  + +L    G   +  +  +L+DMYSKCG +  A  +F  I   DV+
Sbjct: 59  KGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVV 118

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           +W+ MI G       +EA  LF  M +    PN  T  S++     +G L  G+ IH  I
Sbjct: 119 AWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCI 178

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
            K   + +N+ +   LI MY K   ++   +VF+ M    L SWNA++SG        + 
Sbjct: 179 CKYGFESDNL-VSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRG 237

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLD--IGRQYFNAMIQDYKISPKLQHYGCM 478
             +F +M+ EG +P+  TF+ VL +C  + LLD   G+Q    +I++            +
Sbjct: 238 PRIFYQMLLEGFKPNMFTFISVLRSC--SSLLDPEFGKQVHAHIIKNSSDDDDFVGTA-L 294

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE-- 536
           VD+  +A   ++A      + +  D   WT ++     + + +  E   K+  +++ E  
Sbjct: 295 VDMYAKARCLEDAGVAFDRL-VNRDIFSWTVIISG---YAQTDQAEKAVKYFRQMQREGI 350

Query: 537 NPGAYVLLS 545
            P  Y L S
Sbjct: 351 KPNEYTLAS 359


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 259/664 (39%), Positives = 395/664 (59%), Gaps = 17/664 (2%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           +H Q I  G  +     S ++++     F  +  A  VF+ + E + ++WN +I G+  +
Sbjct: 141 IHGQAIVDGCDSELLLGSNIVKM--YFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKN 198

Query: 109 SSPVVAIKFYVRMILSGFVP-NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFV 167
              V +I+ +  +I       +T T   IL + A++  +  G QIH+   K G  S  +V
Sbjct: 199 EMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYV 258

Query: 168 HTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREE 227
            T  I++Y++ G+++ A  +F +    D V+Y A+I GY S G  + +  LF E+ +   
Sbjct: 259 LTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGA 318

Query: 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL----HVTNALIDMYSKCGD 283
                 ST+V+++    H+        +   I G+ L SN      V+ AL  +YSK  +
Sbjct: 319 KL--KSSTLVSLVPVSGHL-------MLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNE 369

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           +  AR LF+   ++ + SWN MI GYT     ++A+ LFR+M  S   PN VT   +L A
Sbjct: 370 IESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSA 429

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
           CA LGAL LGKW+H  +     + +++ + T+LI MYAKCG+I  A ++FD M  K   +
Sbjct: 430 CAQLGALSLGKWVHDLVRSTDFE-SSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVT 488

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
           WN MISG  +HG   +AL++FS M+  G+ P  +TF+ VL AC+HAGL+  G + FN+MI
Sbjct: 489 WNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMI 548

Query: 464 QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELG 523
             Y   P ++HY C+VD+LGRAG    A   ++ M ++P  ++W +LLGACR+H    L 
Sbjct: 549 HRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLA 608

Query: 524 ESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSV 583
            +V++ L EL+P+N G +VLLSN+++    +   AT+R     + + K PG + IE+G  
Sbjct: 609 RTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGET 668

Query: 584 VHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKL 643
            H F  GD+ HPQ K I+E L++++  + ++G+ P+T   L+D++EE +E  +  HSE+L
Sbjct: 669 PHVFTSGDQSHPQVKAIHEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERL 728

Query: 644 AIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSC 703
           AIA+GLI+T+PGT IRI+KNLRVC +CH+ATKLISKI  R I+ RD NRFHHFKDG CSC
Sbjct: 729 AIAFGLIATEPGTEIRIIKNLRVCLDCHTATKLISKITERVIVVRDANRFHHFKDGVCSC 788

Query: 704 NDYW 707
            DYW
Sbjct: 789 GDYW 792



 Score =  215 bits (547), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 136/493 (27%), Positives = 253/493 (51%), Gaps = 10/493 (2%)

Query: 27  LLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLV 86
           L+     L L  + T++ ++ Q H+QI+  G  N    L+KL +   +S  G + YA  +
Sbjct: 17  LISKNNFLDLFKRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQ--RLSDLGAIYYARDI 74

Query: 87  FETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILS-GFVPNTYTFPFILKSCAKISA 145
           F +++ P+  ++N ++RG S++ SP  ++  +  +  S    PN+ T+ F + + +    
Sbjct: 75  FLSVQRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRD 134

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
              G  IH   +  G +S+  + ++++ MY +   +E AR VF++   +D + +  +I+G
Sbjct: 135 DRAGCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISG 194

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           Y       ++ Q+F ++ I E     + +T++ +L A A +  L LG  + SL    G  
Sbjct: 195 YRKNEMYVESIQVFRDL-INESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCY 253

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
           S+ +V    I +YSKCG +  A  LF    + D++++N MI GYT   + + +L LF+++
Sbjct: 254 SHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKEL 313

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
           + S  +    T +S++P     G L L   IH Y  K++  L++ S+ T+L  +Y+K   
Sbjct: 314 MLSGAKLKSSTLVSLVPVS---GHLMLIYAIHGYSLKSN-FLSHTSVSTALTTVYSKLNE 369

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           I++A ++FD    K+L SWNAMISG   +G  + A+SLF  M      P+ +T   +LSA
Sbjct: 370 IESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSA 429

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           C   G L +G+ + + +++       +     ++ +  + G   EA  L   M  K +  
Sbjct: 430 CAQLGALSLGK-WVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMP-KKNEV 487

Query: 506 IWTSLLGACRVHG 518
            W +++    +HG
Sbjct: 488 TWNTMISGYGLHG 500


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 258/688 (37%), Positives = 409/688 (59%), Gaps = 14/688 (2%)

Query: 22  DPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLS 81
           D P +L +      LLS C  ++ + ++H+ +I +   +    LS  +   A +  GDL+
Sbjct: 1   DDPRRLRR------LLSSCAALRTLTRLHALLIVSSSASCHHILSSCLAT-AYARAGDLA 53

Query: 82  YALLVFETI-REPNQV-IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKS 139
            A     T    P+ +  WN ++  HS  +SP  A++ + R +     P++ TF   L +
Sbjct: 54  AAESTLATAPTSPSSIPAWNALLAAHSRGASPHEALRVF-RALPPAARPDSTTFTLALSA 112

Query: 140 CAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSY 199
           CA++  ++ G+ +       G  +D FV +S++N+YA+ G ++ A  VF++   RD V++
Sbjct: 113 CARLGDLATGEVVTDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTW 172

Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
           + ++TG+ + G    A +++  M +R +    +E  +V V+ ACA  G   +G  V   +
Sbjct: 173 STMVTGFVNAGQPVQAIEMY--MRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYL 230

Query: 260 EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEAL 319
             H +  ++ ++ +L+DMY+K G   +AR +FE +  R+ +SW+ +I       +  EAL
Sbjct: 231 LRHAMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEAL 290

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
            LFR M  S + PN    +  L AC+ LG L LGK IH +I +  +    V   T++IDM
Sbjct: 291 GLFRMMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGFILRTLELDRMVG--TAVIDM 348

Query: 380 YAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439
           Y+KCG++ +A+ +FD +  + L SWN MI+    HG+   ALSLF  M    ++PD  TF
Sbjct: 349 YSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDALSLFQEMKRNEVRPDHATF 408

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME 499
             +LSA +H+GL++ G+ +FN M+ +Y I P  +H  C+VDLL R+GL +EA  L+ ++ 
Sbjct: 409 ASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDLLARSGLVEEANGLVASLH 468

Query: 500 MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559
            KP  +I  +LL  C  + +LELGES A+ +LEL+P + G   L+SN+YA A  W  V  
Sbjct: 469 SKPTISILVALLSGCLNNNKLELGESTAEKILELQPGDVGVLALVSNLYAAAKNWYKVRE 528

Query: 560 IRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPD 619
           +R  + D G KK PGCSSIE+   +H F++ D+ HPQ + I +M+ ++D+ + K G++P 
Sbjct: 529 VRKLMKDHGSKKAPGCSSIEIRGALHTFVMEDQSHPQHRQILQMVMKLDSEMRKMGYIPK 588

Query: 620 TSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISK 679
           T  V +D++E  KE  LS HSE+LA A+GL++T PGT + ++KNLRVCG+CH A K +SK
Sbjct: 589 TEFVYHDLEEGVKEQLLSRHSERLATAFGLLNTSPGTRLVVIKNLRVCGDCHDAIKYMSK 648

Query: 680 IFNREIIARDRNRFHHFKDGNCSCNDYW 707
           I +REI+ RD  RFHHFKDG CSC DYW
Sbjct: 649 IADREIVVRDAKRFHHFKDGACSCGDYW 676


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  497 bits (1279), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 261/594 (43%), Positives = 374/594 (62%), Gaps = 15/594 (2%)

Query: 126 FVPNTYTFP-----FILKSCAKI-----SAISEGKQIHAHVLKLGLE-SDPFVHTSLI-N 173
           F  +T T P     +ILK C  +     S+  + +QIHA  ++ G+  ++P +   LI  
Sbjct: 23  FTISTSTCPESPKSYILKKCIALLLSCASSKFKFRQIHAFSIRHGVPLTNPDMGKYLIFT 82

Query: 174 MYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
           + +    +  A  +F++    +  ++  +I GYA       A +L+ +M +      P+ 
Sbjct: 83  LLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHV--SCIEPDT 140

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
            T   +L A A +  +  G  V S+   +G  S + V N L+ MY+ CG    A  LFE 
Sbjct: 141 HTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFEL 200

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
           + +R++++WN +I GY       EAL LFR+M    +EP+  T +S+L ACA LGAL LG
Sbjct: 201 MAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALG 260

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAM 413
           +  H Y+ K      N+    +L+D+YAKCG+I+ A +VFD M  K++ SW ++I GLA+
Sbjct: 261 RRAHVYMVKVGLD-GNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAV 319

Query: 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQ 473
           +G   +AL LF  +  +GL P +ITFVGVL AC+H G++D G  YF  M ++Y I PK++
Sbjct: 320 NGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIE 379

Query: 474 HYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL 533
           HYGCMVDLLGRAGL  +A   ++ M M+P+A +W +LLGAC +HG L LGE     LL+L
Sbjct: 380 HYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQL 439

Query: 534 EPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKV 593
           EP++ G YVLLSN+YA   RW DV  +R  +  +G+KK PG S +E+ + +HEF++GD+ 
Sbjct: 440 EPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRS 499

Query: 594 HPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTK 653
           HPQ++ IY  L EI  LL+  G+VP  S VL D++EE KE ALS+HSEK+AIA+ LI+T 
Sbjct: 500 HPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTA 559

Query: 654 PGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            G  IR+VKNLRVC +CH A KLISK+F+REI+ RDR+RFHHFKDG+CSC DYW
Sbjct: 560 AGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSRFHHFKDGHCSCKDYW 613



 Score =  235 bits (599), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 134/411 (32%), Positives = 232/411 (56%), Gaps = 10/411 (2%)

Query: 7   SLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQ-NIKQVHSQIIKTGLHNTQFAL 65
           S T+S S     P S   Y L   +  +ALL  C + +   +Q+H+  I+ G+  T   +
Sbjct: 22  SFTISTSTC---PESPKSYIL---KKCIALLLSCASSKFKFRQIHAFSIRHGVPLTNPDM 75

Query: 66  SKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG 125
            K +    +S    +SYA  +F  I+ PN   WN +IRG++ S +P+ A++ Y +M +S 
Sbjct: 76  GKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSC 135

Query: 126 FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR 185
             P+T+T+PF+LK+ AK+  + EG+++H+  ++ G ES  FV  +L++MYA  G  ESA 
Sbjct: 136 IEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAH 195

Query: 186 LVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH 245
            +F   + R+ V++ ++I GYA  G  ++A  LF EM +R     P+  T+V++LSACA 
Sbjct: 196 KLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLR--GVEPDGFTMVSLLSACAE 253

Query: 246 MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVM 305
           +G+L LG      +   GL  NLH  NAL+D+Y+KCG + +A  +F+ +E++ V+SW  +
Sbjct: 254 LGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSL 313

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365
           I G       KEAL LF+++ +  + P+++TF+ VL AC++ G +D G      + + + 
Sbjct: 314 IVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYG 373

Query: 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA-SWNAMISGLAMHG 415
            +  +  +  ++D+  + G +K A +    M  +  A  W  ++    +HG
Sbjct: 374 IVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHG 424


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  497 bits (1279), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 265/678 (39%), Positives = 402/678 (59%), Gaps = 9/678 (1%)

Query: 34  LALLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           +A+L+ C + +++K   ++H QI++ G     F  + LI +   +  G +  A   F+ +
Sbjct: 110 VAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINM--YNKCGSVRGAWDSFKRL 167

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
              + V W  +I          +A   Y RM L G VPN  T   +  +      +SEGK
Sbjct: 168 EHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGK 227

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            I++ V    +ESD  V  S +NM+   G L  AR +F     RD V++  +IT Y    
Sbjct: 228 FIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNE 287

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
              +A +LF  +  +++    N+ T V +L+    + SL  G  +  L++  G   ++ V
Sbjct: 288 NFGEAVRLFGRL--QQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVV 345

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
             AL+ +Y +C    +A  +F  +  +DVI+W VM   Y      KEAL LF++M     
Sbjct: 346 ATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGR 405

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
            P   T ++VL  CA+L AL  G+ IH++I +N  ++  V + T+LI+MY KCG +  A 
Sbjct: 406 RPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMV-VETALINMYGKCGKMAEAR 464

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
            VF+ M  + +  WN+M+   A HG  D+ L LF++M  +G + D ++FV VLSA +H+G
Sbjct: 465 SVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSG 524

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA-EALLKTMEMKPDAAIWTS 509
            +  G QYF AM+QD+ I+P  + YGC+VDLLGRAG   EA + +LK     PD  +W +
Sbjct: 525 SVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMT 584

Query: 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
           LLGACR H + +  ++ A+ +LE +P + GAYV+LSN+YA AG WD V  +R  +  +G+
Sbjct: 585 LLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGV 644

Query: 570 KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE 629
           KK PG SSIE+ + VHEFL GD+ HP+   IY  LD +++ +  +G++PDT  +L+D+++
Sbjct: 645 KKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVED 704

Query: 630 EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
           E KE  L +HSE+LAIA+GL+ST PGT +R++KNLRVC +CH+ATK ISK+  REI+ RD
Sbjct: 705 ERKEDMLFYHSERLAIAFGLMSTPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRD 764

Query: 690 RNRFHHFKDGNCSCNDYW 707
            +RFH+FKDG CSC DYW
Sbjct: 765 THRFHNFKDGRCSCKDYW 782



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 149/489 (30%), Positives = 247/489 (50%), Gaps = 12/489 (2%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           +ALL +C++ +N+   ++VH  +   G          LI++ A    G +  A  VFE +
Sbjct: 9   VALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYA--QCGSVPEAQQVFEIL 66

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
              +   W  +I  +        A+  + +M     +P   T+  IL +CA   ++ +G 
Sbjct: 67  ERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGM 126

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           +IH  +L+ G E D FV T+LINMY + G +  A   F +   RD VS+TA+I       
Sbjct: 127 EIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHD 186

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
               AR L+  M +  +  VPN+ T+ TV +A      L  G ++ SL+    + S++ V
Sbjct: 187 QFALARWLYRRMQL--DGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRV 244

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            N+ ++M+   G L  AR LFE +  RDV++WN++I  Y    ++ EA+ LF ++ Q  I
Sbjct: 245 MNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGI 304

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           + ND+TF+ +L     L +L  GK IH  + K      +V + T+L+ +Y +C     A 
Sbjct: 305 KANDITFVLMLNVYTSLTSLAKGKVIHELV-KEAGYDRDVVVATALMSLYGRCEAPGQAW 363

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           ++F  MG K + +W  M    A +G   +AL LF  M  EG +P   T V VL  C H  
Sbjct: 364 KIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLA 423

Query: 451 LLDIGRQYFNAMIQD-YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
            L  GRQ  + +I++ +++   ++    ++++ G+ G   EA ++ + M  K D  +W S
Sbjct: 424 ALQKGRQIHSHIIENGFRMEMVVE--TALINMYGKCGKMAEARSVFEKMA-KRDILVWNS 480

Query: 510 LLGACRVHG 518
           +LGA   HG
Sbjct: 481 MLGAYAQHG 489



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 126/477 (26%), Positives = 223/477 (46%), Gaps = 39/477 (8%)

Query: 126 FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR 185
           F P+T  F  +L+ C+    +  G+++H HV   G E +  V   LI MYAQ G +  A+
Sbjct: 1   FKPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 60

Query: 186 LVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH 245
            VF     +D  ++T +I  Y  +G  D A  +F +M  +EE+ +P + T V +L+ACA 
Sbjct: 61  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQM--QEEDVMPTKVTYVAILNACAS 118

Query: 246 MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVM 305
             SL+ G  +   I   G   ++ V  ALI+MY+KCG +  A D F+ +E RDV+SW  M
Sbjct: 119 TESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAM 178

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365
           I        +  A  L+R+M    + PN +T  +V  A      L  GK+I++ +     
Sbjct: 179 IAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVM 238

Query: 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
           + ++V +  S ++M+   G +  A ++F+ M  + + +WN +I+    +    +A+ LF 
Sbjct: 239 E-SDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFG 297

Query: 426 RMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ-----DYKISPKL-------- 472
           R+  +G++ +DITFV +L+       L  G+     + +     D  ++  L        
Sbjct: 298 RLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCE 357

Query: 473 ---QHYGCMVDL--------------LGRAGLFDEAEALLKTMEM---KPDAAIWTSLLG 512
              Q +   VD+                + G   EA  L + M++   +P +A   ++L 
Sbjct: 358 APGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLD 417

Query: 513 ACRVHGRLELGESVAKHLLE--LEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
            C     L+ G  +  H++E     E      L+ NMY   G+  +  ++  ++  +
Sbjct: 418 TCAHLAALQKGRQIHSHIIENGFRMEMVVETALI-NMYGKCGKMAEARSVFEKMAKR 473


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  497 bits (1279), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 263/676 (38%), Positives = 396/676 (58%), Gaps = 45/676 (6%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           +LL+ C +++N+KQVH+ + KTGL        KL+   AVS    L YA  +F     P+
Sbjct: 10  SLLTNCRSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPD 69

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVP-NTYTFPFILKSCAKISAISEGKQIH 153
             + N +IRG + S +P  ++  +V M      P ++++F F+LK+ A   ++  G Q+H
Sbjct: 70  VFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLH 129

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
              +  GL++  FV T+L++MY++ G +  A+ VF +    + V++ A++T     G + 
Sbjct: 130 CQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVK 189

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
            A  +F+ MP R                                         NL   N 
Sbjct: 190 GADMMFNRMPFR-----------------------------------------NLTSWNV 208

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           ++  Y+K G+L  AR LF  +  +D +SW+ MI G+ H   + EA   FR++ Q  + PN
Sbjct: 209 MLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPN 268

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
           +V+    L ACA  GA++ GK +H +I+K+   L  VS+  +L+D Y+KCGN+  A  VF
Sbjct: 269 EVSLTGALSACADAGAIEFGKILHGFIEKS-GFLWMVSVNNALLDTYSKCGNVGMARLVF 327

Query: 394 DGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           + M  K ++ SW +MI+GLAMHG  ++A+ LF  M   G++PD I F+ +L AC+HAGL+
Sbjct: 328 ERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLI 387

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           + G +YF  M   Y I P ++HYGCMVDL GRAG  D+A   +  M + P A IW +LLG
Sbjct: 388 EKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLG 447

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           AC +HG ++L E V + L EL+P N G +VLLSN+YA AG+W DVA +R  + D+ M K 
Sbjct: 448 ACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKT 507

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSG-FVPDTSEVLYDMDEEW 631
           PG S IEV  +++ F+ G+  +  ++  YE L EI   L   G ++P+   VL+D+++E 
Sbjct: 508 PGWSMIEVDKIMYSFVAGEVQNSITEEAYEKLKEIMLKLRVEGCYIPEVGSVLHDIEDEE 567

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           KE ++S HSEKLA+A+G+     G+ IRIVKNLRVC +CH+  KLISK++  EI+ RDR+
Sbjct: 568 KEDSVSRHSEKLAVAFGIARLCKGSIIRIVKNLRVCRDCHTVMKLISKVYGLEIVVRDRS 627

Query: 692 RFHHFKDGNCSCNDYW 707
           RFH FK G+CSC DYW
Sbjct: 628 RFHSFKTGSCSCRDYW 643


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 264/592 (44%), Positives = 373/592 (63%), Gaps = 27/592 (4%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDP---FVHTSLINMYAQNGELESARLVFNKSS 192
           +L++C+ +S +   KQ+HA  L+     +P   F++  ++ + +   ++  A  VF+   
Sbjct: 31  VLQTCSDMSQL---KQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIE 87

Query: 193 LRDAVSYTALITGYA---SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL 249
              +  +  LI   A   SR   ++A  L+ +M  R E+  P++ T   VL ACA++   
Sbjct: 88  NHSSFMWNTLIRACAHDVSRK--EEAFMLYRKMLERGES-SPDKHTFPFVLKACAYIFGF 144

Query: 250 ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309
             G  V   I  HG G +++V N LI +Y  CG L  AR +F+ + +R ++SWN MI   
Sbjct: 145 SEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDAL 204

Query: 310 THTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK--NHQKL 367
               +Y  AL LFR+M Q + EP+  T  SVL ACA LG+L LG W HA++ +  +    
Sbjct: 205 VRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVA 263

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
            +V +  SLI+MY KCG+++ AEQVF GM  + LASWNAMI G A HG+A++A++ F RM
Sbjct: 264 MDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRM 323

Query: 428 IG--EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485
           +   E ++P+ +TFVG+L ACNH G ++ GRQYF+ M++DY I P L+HYGC+VDL+ RA
Sbjct: 324 VDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARA 383

Query: 486 GLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG-RLELGESVAKHLLELEPEN------- 537
           G   EA  ++ +M MKPDA IW SLL AC   G  +EL E +A++++  + +N       
Sbjct: 384 GYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNC 443

Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQS 597
            GAYVLLS +YA A RW+DV  +R  +++ G++K PGCSSIE+  + HEF  GD  HPQ+
Sbjct: 444 SGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQT 503

Query: 598 KHIYEMLDEIDALLEKSGFVPDTSEV-LYD-MDEEWKEGALSHHSEKLAIAYGLISTKPG 655
           K IY+ L  ID  L   G++PD S+  L D  ++  KE +L  HSE+LAIA+GLI+  P 
Sbjct: 504 KQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQ 563

Query: 656 TTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           T IRI KNLRVC +CH  TKLISK+FN EII RDR RFHHFKDG+CSC DYW
Sbjct: 564 TPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 615



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 130/395 (32%), Positives = 215/395 (54%), Gaps = 18/395 (4%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHN---TQFALSKLIEICAVSPFGDLSYALLVFETIR 91
            +L  C++M  +KQ+H+  ++T       T F   K++++   S F D++YA  VF++I 
Sbjct: 30  TVLQTCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQL--SSSFSDVNYAFRVFDSIE 87

Query: 92  EPNQVIWNNIIRG--HSLSSSPVVAIKFYVRMILSG-FVPNTYTFPFILKSCAKISAISE 148
             +  +WN +IR   H +S     A   Y +M+  G   P+ +TFPF+LK+CA I   SE
Sbjct: 88  NHSSFMWNTLIRACAHDVSRKEE-AFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSE 146

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           GKQ+H  ++K G   D +V+  LI++Y   G L+ AR VF++   R  VS+ ++I     
Sbjct: 147 GKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVR 206

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH---GLG 265
            G  D A QLF EM   + +F P+  T+ +VLSACA +GSL LG W  + +       + 
Sbjct: 207 FGEYDSALQLFREM---QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVA 263

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
            ++ V N+LI+MY KCG L  A  +F+ ++KRD+ SWN MI G+      +EA+  F +M
Sbjct: 264 MDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRM 323

Query: 326 L--QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383
           +  + N+ PN VTF+ +L AC + G ++ G+     + +++     +  +  ++D+ A+ 
Sbjct: 324 VDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARA 383

Query: 384 GNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHGKA 417
           G I  A  +   M  K  A  W +++      G +
Sbjct: 384 GYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGAS 418


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 260/651 (39%), Positives = 387/651 (59%), Gaps = 31/651 (4%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G+LS A  +F  + E + V WN ++ G + +     A K + +M+    V N  ++  +L
Sbjct: 136 GNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML----VKNEISWNGLL 191

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
            +  +   I + +++    +   + S       L+  Y +   L+ AR +F++  +RD +
Sbjct: 192 SAYVQNGRIEDARRLFDSKMDWEIVS----WNCLMGGYVRKKRLDDARSLFDRMPVRDKI 247

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIRE--------ENFVPNE--STVVTVLSACAHMG 247
           S+  +ITGYA  G L +AR+LF+E+PIR+          FV N        +        
Sbjct: 248 SWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKN 307

Query: 248 SLELGNWVCSLIEGHGL-----------GSNLHVTNALIDMYSKCGDLVKARDLFESIEK 296
            +     +   ++   +             N    N ++  Y++CG++ +A+ LF+ + +
Sbjct: 308 EVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQ 367

Query: 297 RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
           RD ISW  MI GY  +   +EAL LF +M +     N       L +CA + AL+LGK +
Sbjct: 368 RDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQL 427

Query: 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGK 416
           H  + K   +   ++   +L+ MY KCG+I+ A  VF+ +  K + SWN MI+G A HG 
Sbjct: 428 HGRLVKAGFQTGYIAG-NALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGF 486

Query: 417 ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG 476
             +AL+LF  M    ++PDD+T VGVLSAC+H GL+D G +YFN+M Q+Y I+   +HY 
Sbjct: 487 GKEALALFESM-KMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYT 545

Query: 477 CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536
           CM+DLLGRAG  DEA  L+K+M   PDAA W +LLGA R+HG  ELGE  A+ + E+EP+
Sbjct: 546 CMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPD 605

Query: 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQ 596
           N G YVLLSN+YA +GRW +V  +R+++ DKG+KKVPG S +E+ +  H F VGD  HP+
Sbjct: 606 NSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPE 665

Query: 597 SKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGT 656
           ++ IY  L+E+D  L+K GFV  T  VL+D++EE KE  L +HSEKLA+A+G++S  PG 
Sbjct: 666 AERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGR 725

Query: 657 TIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            IR++KNLRVC +CH+A K ISKI  R+II RD NRFHHF +G+CSC DYW
Sbjct: 726 PIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 177/402 (44%), Gaps = 54/402 (13%)

Query: 161 LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD 220
           ++SD       I+ Y + G+ ESA  VFN    R  V+Y A+I+GY S    D AR++F+
Sbjct: 56  VDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFE 115

Query: 221 EMPIRE--------ENFVPN--------------ESTVVT---VLSACAHMGSLELGNWV 255
           +MP R+          +V N              E  VV+   +LS  A  G +E    +
Sbjct: 116 KMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKI 175

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
              +    L  N    N L+  Y + G +  AR LF+S    +++SWN ++GGY      
Sbjct: 176 FDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRL 231

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
            +A  LF +M       + +++  ++   A  G L   + +   +      + +V  WT+
Sbjct: 232 DDARSLFDRMPVR----DKISWNIMITGYAQNGLLSEARRLFEEL-----PIRDVFAWTA 282

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           ++  + + G +  A ++F+ M  K   SWNAMI+G     + +KA  LF +M        
Sbjct: 283 MVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSW 342

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
           + T V   + C   G +D  +  F+ M Q   IS     +  M+    ++G  +EA  L 
Sbjct: 343 N-TMVTGYAQC---GNIDQAKILFDEMPQRDCIS-----WAAMISGYAQSGQSEEALHLF 393

Query: 496 KTMEMKPDAAIWTS-----LLGACRVHGRLELGESVAKHLLE 532
             ++MK D  I         L +C     LELG+ +   L++
Sbjct: 394 --IKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVK 433



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 126/278 (45%), Gaps = 28/278 (10%)

Query: 293 SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL 352
           +I   D++ WN  I  Y      + AL +F  M + +     VT+ +++         D 
Sbjct: 54  TIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRST----VTYNAMISGYLSNNKFDC 109

Query: 353 GKWIHAYIDKNHQKLNNVSL--WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISG 410
            +       K  +K+ +  L  W  ++  Y K GN+ AA  +F+ M  K + SWNAM+SG
Sbjct: 110 AR-------KVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSG 162

Query: 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470
            A +G  ++A  +F +M    L  ++I++ G+LSA    G ++  R+ F     D K+  
Sbjct: 163 FAQNGFVEEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLF-----DSKMDW 213

Query: 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHL 530
           ++  + C++    R    D+A +L   M ++ D   W  ++     +G L    S A+ L
Sbjct: 214 EIVSWNCLMGGYVRKKRLDDARSLFDRMPVR-DKISWNIMITGYAQNGLL----SEARRL 268

Query: 531 LELEP-ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
            E  P  +  A+  + + +   G  D+   I   + +K
Sbjct: 269 FEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEK 306


>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
 gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g22410, mitochondrial; Flags: Precursor
 gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
 gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
 gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
 gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
          Length = 681

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 258/621 (41%), Positives = 379/621 (61%), Gaps = 37/621 (5%)

Query: 18  PPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF 77
           P + +  +  + + P L+LL KC  + ++KQ+ +Q+I  GL    FA S+LI  CA+S  
Sbjct: 41  PINWNSTHSFVLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSES 100

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV---PNTYTFP 134
             L Y++ + + I  PN   WN  IRG S S +P  +   Y +M+  G     P+ +T+P
Sbjct: 101 RYLDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYP 160

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
            + K CA +   S G  I  HVLKL LE    VH + I+M+A  G++E+AR VF++S +R
Sbjct: 161 VLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVR 220

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
           D VS+  LI GY   G  + A  ++  M    E   P++ T++ ++S+C+ +G L  G  
Sbjct: 221 DLVSWNCLINGYKKIGEAEKAIYVYKLM--ESEGVKPDDVTMIGLVSSCSMLGDLNRGKE 278

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR----------------- 297
               ++ +GL   + + NAL+DM+SKCGD+ +AR +F+++EKR                 
Sbjct: 279 FYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGL 338

Query: 298 --------------DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
                         DV+ WN MIGG       ++AL LF++M  SN +P+++T +  L A
Sbjct: 339 LDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSA 398

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
           C+ LGALD+G WIH YI+K    LN V+L TSL+DMYAKCGNI  A  VF G+  +   +
Sbjct: 399 CSQLGALDVGIWIHRYIEKYSLSLN-VALGTSLVDMYAKCGNISEALSVFHGIQTRNSLT 457

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
           + A+I GLA+HG A  A+S F+ MI  G+ PD+ITF+G+LSAC H G++  GR YF+ M 
Sbjct: 458 YTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMK 517

Query: 464 QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELG 523
             + ++P+L+HY  MVDLLGRAGL +EA+ L+++M M+ DAA+W +LL  CR+HG +ELG
Sbjct: 518 SRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELG 577

Query: 524 ESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSV 583
           E  AK LLEL+P + G YVLL  MY  A  W+D    R  +N++G++K+PGCSSIEV  +
Sbjct: 578 EKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGI 637

Query: 584 VHEFLVGDKVHPQSKHIYEML 604
           V EF+V DK  P+S+ IY+ L
Sbjct: 638 VCEFIVRDKSRPESEKIYDRL 658


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 257/640 (40%), Positives = 382/640 (59%), Gaps = 33/640 (5%)

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
           W + +R  + S+    AI  Y+ M +SG  P+ + FP +LK+ + +  +  G+QIHA  +
Sbjct: 60  WVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAV 119

Query: 158 KLGLESDP---------------------FVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           K G  S                       F + +L+ MYA+ G ++ ++ +F     RD 
Sbjct: 120 KFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDM 179

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           VS+  +I+ ++      +A   F  M +  E    +  T+ +VL AC+H+  L++G  + 
Sbjct: 180 VSWNTMISSFSQSDRFSEALAFFRLMVL--EGVELDGVTIASVLPACSHLERLDVGKEIH 237

Query: 257 S-LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
           + ++  + L  N  V +AL+DMY  C  +   R +F+ I  R +  WN MI GY      
Sbjct: 238 AYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLD 297

Query: 316 KEALMLFRQMLQ-SNIEPNDVTFLSVLPACAY-LGALDLGKWIHAYIDKNHQKLNNVSLW 373
           ++AL+LF +M++ + + PN  T  SV+PAC + L A+  GK IHAY  +N    +++++ 
Sbjct: 298 EKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRN-MLASDITVG 356

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG-- 431
           ++L+DMYAKCG +  + +VF+ M  K + +WN +I    MHGK ++AL LF  M+ E   
Sbjct: 357 SALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGR 416

Query: 432 ---LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488
               +P+++TF+ V +AC+H+GL+  G   F  M  D+ + P   HY C+VDLLGRAG  
Sbjct: 417 GGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQL 476

Query: 489 DEAEALLKTMEMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547
           +EA  L+ TM  + D    W+SLLGACR+H  +ELGE  AK+LL LEP     YVLLSN+
Sbjct: 477 EEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNI 536

Query: 548 YAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEI 607
           Y+ AG W+    +R  +   G+KK PGCS IE    VH+F+ GD  HPQS+ ++  L+ +
Sbjct: 537 YSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETL 596

Query: 608 DALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVC 667
              + K G+VPDTS VL+++DE+ KE  L  HSEKLAIA+G+++T PGTTIR+ KNLRVC
Sbjct: 597 SEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVC 656

Query: 668 GNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            +CH+ATK ISKI  REII RD  RFHHFK+G CSC DYW
Sbjct: 657 NDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 696



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 208/411 (50%), Gaps = 32/411 (7%)

Query: 35  ALLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIE-------------------IC 72
           A+L   + +Q++K   Q+H+  +K G  ++   ++  +                    + 
Sbjct: 97  AVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMA 156

Query: 73  AVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYT 132
             +  G +  +  +FE+  + + V WN +I   S S     A+ F+  M+L G   +  T
Sbjct: 157 MYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVT 216

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLG-LESDPFVHTSLINMYAQNGELESARLVFNKS 191
              +L +C+ +  +  GK+IHA+VL+   L  + FV ++L++MY    ++ES R VF+  
Sbjct: 217 IASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHI 276

Query: 192 SLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH-MGSLE 250
             R    + A+I+GYA  G  + A  LF EM I+    +PN +T+ +V+ AC H + ++ 
Sbjct: 277 LGRRIELWNAMISGYARNGLDEKALILFIEM-IKVAGLLPNTTTMASVMPACVHSLAAIA 335

Query: 251 LGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYT 310
            G  + +    + L S++ V +AL+DMY+KCG L  +R +F  +  ++VI+WNV+I    
Sbjct: 336 KGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACG 395

Query: 311 HTSDYKEALMLFRQMLQS-----NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365
                +EAL LF+ M+         +PN+VTF++V  AC++ G +  G  +   +  +H 
Sbjct: 396 MHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHG 455

Query: 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM--GYKTLASWNAMISGLAMH 414
                  +  ++D+  + G ++ A ++ + M   +  + +W++++    +H
Sbjct: 456 VEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIH 506



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 90/181 (49%), Gaps = 20/181 (11%)

Query: 297 RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
           R   SW   +   T ++D++EA+  + +M  S   P++  F +VL A + L  L  G+ I
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNI--------------------KAAEQVFDGM 396
           HA   K     ++V++  +L++MY KCG I                      ++ +F+  
Sbjct: 115 HAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESF 174

Query: 397 GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR 456
             + + SWN MIS  +   +  +AL+ F  M+ EG++ D +T   VL AC+H   LD+G+
Sbjct: 175 VDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGK 234

Query: 457 Q 457
           +
Sbjct: 235 E 235


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 267/695 (38%), Positives = 394/695 (56%), Gaps = 67/695 (9%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G L  A  VF+ I   + V W  II G++       AIK +V M+    +P  +T   +L
Sbjct: 55  GKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVL 114

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR--- 194
            SCA   +   GK++H+ V+KLGL +   V  SL+NMYA+ G+L+ A++VF++  LR   
Sbjct: 115 ASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTS 174

Query: 195 ----------------------------DAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
                                       D VS+ ++I G    G+ ++A Q F  + +++
Sbjct: 175 SWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSI-LKD 233

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG---- 282
            +  P+  ++ + LSACA++  L  G  +   I      ++  V NALI MY+K G    
Sbjct: 234 TSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEI 293

Query: 283 -----------------------------DLVKARDLFESIEKRDVISWNVMIGGYTHTS 313
                                        D+  AR +F S++  DV++W  MI GY    
Sbjct: 294 ARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNG 353

Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
              +A+ +F+ M+     PN  T  ++L A + + +L+ GK IHA   ++ + L+  S+ 
Sbjct: 354 LNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSP-SVG 412

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGY-KTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
            +L  MYAK G+I  A +VF+ +   +   SW +MI  LA HG  ++A+ LF +M+  G+
Sbjct: 413 NALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGI 472

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
           +PD IT+VGVLSAC H GL++ GR YF+ M   +KI P L HY CMVDL GRAGL  EA 
Sbjct: 473 KPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAY 532

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552
             ++ M M+PD   W SLL +C+V+  ++L +  A+ LL +EP N GAY  L+N+Y+  G
Sbjct: 533 KFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCG 592

Query: 553 RWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE 612
           +WDD A IR  +  +G+KK  G S +++ +  H F V D +HPQ   IY+M+D+I   ++
Sbjct: 593 KWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIK 652

Query: 613 KSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHS 672
           K GF PDT  VL+D++ E K+  L +HSEKLAIA+G+IST   TT+RI+KNLRVC +CH+
Sbjct: 653 KMGFAPDTESVLHDLEVEVKDQILRYHSEKLAIAFGIISTPENTTLRIMKNLRVCNDCHN 712

Query: 673 ATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           A K ISK+ +REII RD  RFHHFKDG+CSC DYW
Sbjct: 713 AIKFISKLVDREIIVRDATRFHHFKDGSCSCKDYW 747



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 124/472 (26%), Positives = 214/472 (45%), Gaps = 96/472 (20%)

Query: 156 VLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDA 215
           ++KLGL    ++  +L+N+YA+ G    A  +FN+  ++   S+  +++GYA +G L+ A
Sbjct: 1   MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKA 60

Query: 216 RQLFDEMPIRE-----------------------------ENFVPNESTVVTVLSACAHM 246
            Q+FD +P+R+                             +  +P + T+  VL++CA  
Sbjct: 61  HQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAAT 120

Query: 247 GSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR------------------ 288
           GS  +G  V S +   GL + + V N+L++MY+K GDL  A+                  
Sbjct: 121 GSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMI 180

Query: 289 ---------DL----FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ-SNIEPND 334
                    DL    FE + +RD++SWN MI G        EAL  F  +L+ ++++P+ 
Sbjct: 181 SLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDR 240

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKN---------------HQKLNNVSL------- 372
            +  S L ACA L  L  GK IH YI +                + K   V +       
Sbjct: 241 FSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQ 300

Query: 373 ----------WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALS 422
                     +T+L++ Y K G+I  A Q+F+ +    + +W AMI G   +G  + A+ 
Sbjct: 301 SGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIE 360

Query: 423 LFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK-ISPKLQHYGCMVDL 481
           +F  M+ EG +P+  T   +LSA +    L+ G+Q   + I+  + +SP + +   +  +
Sbjct: 361 VFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGN--ALTTM 418

Query: 482 LGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL 533
             +AG  + A  +   +    D   WTS++ A   HG  E    + + +L L
Sbjct: 419 YAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTL 470



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 125/475 (26%), Positives = 226/475 (47%), Gaps = 77/475 (16%)

Query: 26  KLLQNQPSLA-LLSKC--TNMQNI-KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLS 81
           K+L  Q +L  +L+ C  T  + I K+VHS ++K GLH      + L+ + A +  GDL 
Sbjct: 102 KVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKT--GDLK 159

Query: 82  YALLVFETIREPNQVIWNNIIRGHS--------------LSSSPVV-------------- 113
            A +VF+ ++  N   WN +I  H               LS   +V              
Sbjct: 160 MAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGF 219

Query: 114 ---AIKFYVRMIL-SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHT 169
              A++F+  ++  +   P+ ++    L +CA +  +S GKQIH ++++   ++   V  
Sbjct: 220 DNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGN 279

Query: 170 SLINMYAQNGELESARLVFNKSSLR--DAVSYTALITGYASRGYLDDARQLFDEMP---- 223
           +LI+MYA++G +E AR +  +S +   D +++TAL+ GY   G +  ARQ+F+ +     
Sbjct: 280 ALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDV 339

Query: 224 -------------------------IREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
                                    +  E   PN  T+  +LSA + + SL  G  + + 
Sbjct: 340 VAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHAS 399

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI-EKRDVISWNVMIGGYTHTSDYKE 317
               G   +  V NAL  MY+K G +  AR +F  + + RD +SW  MI         +E
Sbjct: 400 AIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEE 459

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID--KNHQKLN-NVSLWT 374
           A+ LF QML   I+P+ +T++ VL AC + G ++ G+   +Y D  KN  K++  +S + 
Sbjct: 460 AIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGR---SYFDLMKNVHKIDPTLSHYA 516

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMI 428
            ++D++ + G ++ A +  + M  +  + +W +++S   ++   D A     R++
Sbjct: 517 CMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLL 571


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 261/678 (38%), Positives = 404/678 (59%), Gaps = 11/678 (1%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LL  C+++Q +   + +H+     GL    +  + L+ + A    G L  A  +F +I  
Sbjct: 113 LLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYA--KCGHLYQAQTLFNSISH 170

Query: 93  PNQ--VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            ++  V WN +I   S  +     I    +M  +G  PN+ T   IL +  + +A+ +GK
Sbjct: 171 QDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGK 230

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            IHA+ ++     +  + T+L++MYA+   L  AR +FN  + ++ V ++A+I GY    
Sbjct: 231 AIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHD 290

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV-CSLIEGHGLGSNLH 269
            + DA  L+D+M +      P  +T+ T+L ACA +  L+ G  + C +I+  G+  +  
Sbjct: 291 SISDALALYDDM-LCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKS-GMDLDTT 348

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           V N+LI MY+KCG +  A    + +  +D +S++ +I G       ++AL++FRQM  S 
Sbjct: 349 VGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSG 408

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           I P   T +++LPAC++L AL  G   H Y        N+ S+  ++IDMY+KCG I  +
Sbjct: 409 IAPYLETMIALLPACSHLAALQHGTCCHGYTVVR-GFTNDTSICNAIIDMYSKCGKITIS 467

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
            ++FD M  + + SWN MI G  +HG   +ALSLF  +   GL+PDD+T + VLSAC+H+
Sbjct: 468 REIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHS 527

Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
           GL+  G+ +F++M Q++ I P++ HY CMVDLL RAG  DEA   ++ M   P+  IW +
Sbjct: 528 GLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGA 587

Query: 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
           LL ACR H  +E+GE V+K +  L PE  G +VL+SN+Y+  GRWDD A IR+     G 
Sbjct: 588 LLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGY 647

Query: 570 KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE 629
           KK PGCS +E+  V+H F+ G + HPQS  I + L E+   ++K G+  D+S VL+D++E
Sbjct: 648 KKSPGCSWVEISGVIHVFIGGHQSHPQSASINKKLQELLVQMKKLGYRADSSFVLHDVEE 707

Query: 630 EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
           E KE  L +HSEK+AIA+G+++T P + I + KNLR+C +CHSA K I+ +  REI  RD
Sbjct: 708 EEKEQILLYHSEKVAIAFGILNTSPSSRILVTKNLRICVDCHSAIKFITLLTEREITVRD 767

Query: 690 RNRFHHFKDGNCSCNDYW 707
            +RFHHFKDG C+C D+W
Sbjct: 768 ASRFHHFKDGICNCQDFW 785



 Score =  229 bits (584), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 159/525 (30%), Positives = 261/525 (49%), Gaps = 43/525 (8%)

Query: 79  DLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILK 138
           ++  A  VF+ I +P+ V+WN +IR ++ S     +I  Y+ M+  G  P  +TFPF+LK
Sbjct: 56  EIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLK 115

Query: 139 SCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL--RDA 196
           +C+ + A+  G+ IH H   LGL  D +V T+L++MYA+ G L  A+ +FN  S   RD 
Sbjct: 116 ACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDI 175

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           V++ A+I  ++       A+ +     +++    PN ST+V++L       +L  G  + 
Sbjct: 176 VAWNAMIAAFSFHAL--HAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIH 233

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
           +    +    N+ +  AL+DMY+KC  L  AR +F ++ K++ + W+ MIGGY       
Sbjct: 234 AYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSIS 293

Query: 317 EALMLFRQMLQ-SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
           +AL L+  ML    + P   T  ++L ACA L  L  GK +H ++ K+   L+  ++  S
Sbjct: 294 DALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDT-TVGNS 352

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           LI MYAKCG +  A    D M  K   S++A+ISG   +G A+KAL +F +M   G+ P 
Sbjct: 353 LISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPY 412

Query: 436 DITFVGVLSACNHAGLLDIG---------------RQYFNAMIQDY----------KISP 470
             T + +L AC+H   L  G                   NA+I  Y          +I  
Sbjct: 413 LETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFD 472

Query: 471 KLQH-----YGCMVDLLGRAGLFDEAEALLKTME---MKPDAAIWTSLLGACRVHGRLEL 522
           ++Q+     +  M+   G  GL  EA +L + ++   +KPD     ++L AC   G +  
Sbjct: 473 RMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTE 532

Query: 523 GE---SVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564
           G+   S       ++P     Y+ + ++ A AG  D+  T   R+
Sbjct: 533 GKYWFSSMSQNFNIKPR-MAHYICMVDLLARAGNLDEAYTFIQRM 576



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 12/151 (7%)

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
           T L   +     I+ A  VFD +   ++  WN MI   A  G   +++ L+  M+  G+ 
Sbjct: 45  TQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVT 104

Query: 434 PDDITFVGVLSACNHAGLLDIGR-----QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488
           P + TF  +L AC+    L +GR      +   +  D  +S  L H      +  + G  
Sbjct: 105 PTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLH------MYAKCGHL 158

Query: 489 DEAEALLKTMEMKP-DAAIWTSLLGACRVHG 518
            +A+ L  ++  +  D   W +++ A   H 
Sbjct: 159 YQAQTLFNSISHQDRDIVAWNAMIAAFSFHA 189


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 257/628 (40%), Positives = 382/628 (60%), Gaps = 61/628 (9%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNG----ELESARLVF 188
           FP I  +C  I  +S   QIHA  +K G   D      ++   A +     +L+ A  +F
Sbjct: 27  FPQI-NNCRTIRDLS---QIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIF 82

Query: 189 NKSSLRDAVSYTALITGYASRGYLDD----ARQLFDEMPIREENFVPNESTVVTVLSACA 244
           N+   R+  S+  +I G++     +D    A  LF EM + +E   PN  T  +VL ACA
Sbjct: 83  NQMPQRNCFSWNTIIRGFSESD--EDKALIAITLFYEM-MSDEFVEPNRFTFPSVLKACA 139

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG---------------------- 282
             G ++ G  +  L   +G G +  V + L+ MY  CG                      
Sbjct: 140 KTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMT 199

Query: 283 -----------------------DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEAL 319
                                  D   AR LF+ + +R V+SWN MI GY+    +K+A+
Sbjct: 200 DRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAV 259

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
            +FR+M + +I PN VT +SVLPA + LG+L+LG+W+H Y + +  ++++V L ++LIDM
Sbjct: 260 EVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDV-LGSALIDM 318

Query: 380 YAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439
           Y+KCG I+ A  VF+ +  + + +W+AMI+G A+HG+A  A+  F +M   G++P D+ +
Sbjct: 319 YSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAY 378

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME 499
           + +L+AC+H GL++ GR+YF+ M+    + P+++HYGCMVDLLGR+GL DEAE  +  M 
Sbjct: 379 INLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMP 438

Query: 500 MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559
           +KPD  IW +LLGACR+ G +E+G+ VA  L+++ P + GAYV LSNMYA  G W +V+ 
Sbjct: 439 IKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSE 498

Query: 560 IRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPD 619
           +R R+ +K ++K PGCS I++  V+HEF+V D  HP++K I  ML EI   L  +G+ P 
Sbjct: 499 MRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPI 558

Query: 620 TSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISK 679
           T++VL +++EE KE  L +HSEK+A A+GLIST PG  IRIVKNLR+C +CHS+ KLISK
Sbjct: 559 TTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISK 618

Query: 680 IFNREIIARDRNRFHHFKDGNCSCNDYW 707
           ++ R+I  RDR RFHHF+DG+CSC DYW
Sbjct: 619 VYKRKITVRDRKRFHHFQDGSCSCMDYW 646



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/477 (28%), Positives = 232/477 (48%), Gaps = 86/477 (18%)

Query: 37  LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF--GDLSYALLVFETIREPN 94
           ++ C  ++++ Q+H+  IK+G      A ++++  CA S     DL YA  +F  + + N
Sbjct: 30  INNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRN 89

Query: 95  QVIWNNIIRGHSLSSS--PVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQ 151
              WN IIRG S S     ++AI  +  M+   FV PN +TFP +LK+CAK   I EGKQ
Sbjct: 90  CFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQ 149

Query: 152 IHAHVLKLGLESDPFVHTSLINMYA-----------------------------QNGEL- 181
           IH   LK G   D FV ++L+ MY                              ++GE+ 
Sbjct: 150 IHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIV 209

Query: 182 ---------------ESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
                          ++AR++F+K   R  VS+  +I+GY+  G+  DA ++F EM  ++
Sbjct: 210 LWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREM--KK 267

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
            +  PN  T+V+VL A + +GSLELG W+    E  G+  +  + +ALIDMYSKCG + K
Sbjct: 268 GDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEK 327

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A  +FE + + +VI+W+ MI G+       +A+  F +M Q+ + P+DV ++++L AC++
Sbjct: 328 AIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSH 387

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
            G ++ G+   + +         +  +  ++D+  + G +  AE+    M  K       
Sbjct: 388 GGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIK------- 440

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
                                      PDD+ +  +L AC   G +++G++  N ++
Sbjct: 441 ---------------------------PDDVIWKALLGACRMQGNVEMGKRVANILM 470


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 254/661 (38%), Positives = 393/661 (59%), Gaps = 6/661 (0%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K++H  ++K+G     FA++ L  + A      ++ A  VF+ + E + V WN I+ G+S
Sbjct: 155 KEIHGLLVKSGFSLDLFAMTGLENMYAKCR--QVNEARKVFDRMPERDLVSWNTIVAGYS 212

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +    +A++    M      P+  T   +L + + +  IS GK+IH + ++ G +S   
Sbjct: 213 QNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVN 272

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           + T+L++MYA+ G LE+AR +F+    R+ VS+ ++I  Y       +A  +F +M   +
Sbjct: 273 ISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKM--LD 330

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           E   P + +V+  L ACA +G LE G ++  L    GL  N+ V N+LI MY KC ++  
Sbjct: 331 EGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDT 390

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A  +F  ++ R ++SWN MI G+       +AL  F QM    ++P+  T++SV+ A A 
Sbjct: 391 AASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAE 450

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
           L      KWIH  + ++     NV + T+L+DMYAKCG I  A  +FD M  + + +WNA
Sbjct: 451 LSITHHAKWIHGVVMRSCLD-KNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNA 509

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
           MI G   HG    AL LF  M    ++P+ +TF+ V+SAC+H+GL++ G + F  M ++Y
Sbjct: 510 MIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENY 569

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
            I   + HYG MVDLLGRAG  +EA   +  M +KP   ++ ++LGAC++H  +   E  
Sbjct: 570 SIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKA 629

Query: 527 AKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHE 586
           A+ L EL P++ G +VLL+N+Y  A  W+ V  +R  +  +G++K PGCS +E+ + VH 
Sbjct: 630 AERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHS 689

Query: 587 FLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIA 646
           F  G   HP SK IY  L+++   ++++G+VPDT+ VL  ++ + KE  LS HSEKLAI+
Sbjct: 690 FFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAIS 748

Query: 647 YGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDY 706
           +GL++T  GTTI + KNLRVC +CH+ATK IS +  REI+ RD  RFHHFK+G CSC DY
Sbjct: 749 FGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDY 808

Query: 707 W 707
           W
Sbjct: 809 W 809



 Score =  276 bits (705), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 177/577 (30%), Positives = 291/577 (50%), Gaps = 70/577 (12%)

Query: 31  QPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
            P+  LL +C++++ ++Q+   + K GL+   F  +KL+ +     +G +  A  VFE I
Sbjct: 38  HPAALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSL--FCRYGSVDEAARVFEPI 95

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
                V+++ +++G +  S    A++F+VRM      P  Y F ++LK C   + +  GK
Sbjct: 96  DSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGK 155

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           +IH  ++K G   D F  T L NMYA+  ++  AR VF++   RD VS+  ++ GY+  G
Sbjct: 156 EIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNG 215

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
               A ++   M   EEN  P+  T+V+VL A + +  + +G  +       G  S +++
Sbjct: 216 MARMALEMVKSMC--EENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNI 273

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
           + AL+DMY+KCG L  AR LF+ + +R+V+SWN MI  Y    + KEA+++F++ML   +
Sbjct: 274 STALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGV 333

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAY-----IDKNHQKLNNVSLWTSLIDMYAKCGN 385
           +P DV+ +  L ACA LG L+ G++IH       +D+      NVS+  SLI MY KC  
Sbjct: 334 KPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDR------NVSVVNSLISMYCKCKE 387

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           +  A  +F  +  +TL SWNAMI G A +G+   AL+ FS+M    ++PD  T+V V++A
Sbjct: 388 VDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITA 447

Query: 446 ------CNHA-----------------------------GLLDIGRQYFNAMIQDYKISP 470
                  +HA                             G + I R  F+ M + +  + 
Sbjct: 448 IAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTT- 506

Query: 471 KLQHYGCMVDLLGRAGLFDEAEALLKTME---MKPDAAIWTSLLGACRVHGRLELGESV- 526
               +  M+D  G  G    A  L + M+   +KP+   + S++ AC   G +E G    
Sbjct: 507 ----WNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCF 562

Query: 527 ----AKHLLELEPENPGAYVLLSNMYAGAGR----WD 555
                 + +EL  ++ GA V   ++   AGR    WD
Sbjct: 563 YMMKENYSIELSMDHYGAMV---DLLGRAGRLNEAWD 596


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 251/674 (37%), Positives = 403/674 (59%), Gaps = 5/674 (0%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           LA  S   +++  KQ+HS ++K G+         L+++   S  GD+  AL +F++    
Sbjct: 251 LAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKS--GDIEEALQIFDSGDRT 308

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           N V+WN ++  +        +   + RM+ +G  PN +T+P +L++C     I  G+QIH
Sbjct: 309 NVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIH 368

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
           +  +K G +SD +V   LI+MY++ G L+ A+ + +    +D VS+T++I GY    +  
Sbjct: 369 SLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCK 428

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           +A + F EM  +     P+   + + +SACA + ++  G+ + + +   G  +++ + N 
Sbjct: 429 EALETFKEM--QACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNG 486

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           L+ +Y++CG   +A   FE+IE ++ I+WN +I G+  +  Y+EAL +F +M Q+  + N
Sbjct: 487 LVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYN 546

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
             TF+S + A A L  +  GK IHA + K     +   +  +LI +Y KCG+I+ A+  F
Sbjct: 547 VFTFVSSISASANLADIKQGKQIHARVIKTGYT-SETEISNALISLYGKCGSIEDAKMDF 605

Query: 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLD 453
             M  +   SWN +I+  + HG+  +AL LF +M  +GL+P D+TFVGVL+AC+H GL++
Sbjct: 606 FEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVE 665

Query: 454 IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
            G  YF +M  ++ I P+  HY C+VD+LGRAG  D A+  ++ M +  D+ +W +LL A
Sbjct: 666 EGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSA 725

Query: 514 CRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVP 573
           C+VH  LE+GE  AKHLLELEP +  +YVLLSN YA  G+W     IR  + D+G++K P
Sbjct: 726 CKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEP 785

Query: 574 GCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKE 633
           G S IEV +VVH F VGD++HP +  IY  L  ++  L K G+  +   + ++ ++E K+
Sbjct: 786 GRSWIEVKNVVHAFFVGDRLHPLADQIYNFLSHLNDRLYKIGYKQENYHLFHEKEKEGKD 845

Query: 634 GALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRF 693
                HSEKLA+A+GL+S      +R++KNLRVC +CH+  K  S +  REI+ RD  RF
Sbjct: 846 PTAFVHSEKLAVAFGLMSLPSCMPLRVIKNLRVCNDCHTWMKFTSGVMGREIVLRDVYRF 905

Query: 694 HHFKDGNCSCNDYW 707
           HHF +G+CSC DYW
Sbjct: 906 HHFNNGSCSCGDYW 919



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/466 (29%), Positives = 237/466 (50%), Gaps = 7/466 (1%)

Query: 46  IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           + ++H++ I  GL   +   + LI++ A   F  +  A  VFE +   + V W  ++ G+
Sbjct: 61  VPEIHAKAIICGLSGYRIIGNLLIDLYAKKGF--VRRARRVFEELSVRDNVSWVAVLSGY 118

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
           + +     A++ Y  M  SG VP  Y    IL +C K      G+ IH  V K G  S+ 
Sbjct: 119 AQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSET 178

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           FV  +LI++Y +      A  VF      D+V++  LI+G+A  G+ D A  +FDEM + 
Sbjct: 179 FVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQL- 237

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
                P+  T+ ++L+AC+ +G L  G  + S +   G+  +  +  +L+D+Y K GD+ 
Sbjct: 238 -SGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIE 296

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
           +A  +F+S ++ +V+ WN+M+  Y    D  ++  +F +ML + + PN  T+  +L  C 
Sbjct: 297 EALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCT 356

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
           + G + LG+ IH+   KN  + +++ +   LIDMY+K G +  A+++ D +  K + SW 
Sbjct: 357 HTGEIGLGEQIHSLTIKNGFQ-SDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWT 415

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
           +MI+G   H    +AL  F  M   G+ PD+I     +SAC     +  G Q  +A +  
Sbjct: 416 SMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQ-IHARVYV 474

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
              S  +  +  +V L  R G+  EA +  + +E K +   W  L+
Sbjct: 475 SGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHK-EGITWNGLI 519



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 108/254 (42%), Gaps = 44/254 (17%)

Query: 25  YKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYAL 84
           Y +     S++  +   +++  KQ+H+++IKTG  +     + LI +      G +  A 
Sbjct: 545 YNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISL--YGKCGSIEDAK 602

Query: 85  LVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS 144
           + F  + + N+V WN II   S     + A+  + +M   G  P+  TF  +L +C+ + 
Sbjct: 603 MDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVG 662

Query: 145 AISEGK-QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALI 203
            + EG     +   + G+   P  +  ++++  + G+                       
Sbjct: 663 LVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQ----------------------- 699

Query: 204 TGYASRGYLDDARQLFDEMPIREENFVPNESTV-VTVLSACAHMGSLELGNWVCS---LI 259
                   LD A++  +EMPI      P +S V  T+LSAC    +LE+G +       +
Sbjct: 700 --------LDRAKRFVEEMPI------PADSMVWRTLLSACKVHKNLEIGEFAAKHLLEL 745

Query: 260 EGHGLGSNLHVTNA 273
           E H   S + ++NA
Sbjct: 746 EPHDSASYVLLSNA 759


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 254/572 (44%), Positives = 374/572 (65%), Gaps = 12/572 (2%)

Query: 144 SAISEGKQIHAHVLKLGLESDPFVHTSLINMYA--QNGELESARLVFNKSSLRDAVSYTA 201
           ++IS+ KQ HA +L+  L  +P   + LI+  A   +G+L  AR +F +    D      
Sbjct: 22  TSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNT 81

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVP-NESTVVTVLSACAHMGSLELGNWVCSLIE 260
           +I GYA      +A  L+  M    E  VP +  T   VL+ACA +G+++LG      + 
Sbjct: 82  MIRGYARSQNPYEAVSLYYFMV---ERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVL 138

Query: 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALM 320
            +G GS+L V NALI  Y  CG    A D+F+    RDV++WN+MI  + +    ++A  
Sbjct: 139 KNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFD 198

Query: 321 LFRQMLQ-SNIEPNDVTFLSVLPACAYLGALDLGKWIHAY---IDKNHQKLNNVSLWTSL 376
           L  +M +  N+ P++VT +S++PACA LG L+ GK++H+Y   +DK     + V L T+L
Sbjct: 199 LLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLV-LETAL 257

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           +DMYAKCG+I  A QVF  M  + + +WNA+I GLAMHG  + A+SLF +M  + L PDD
Sbjct: 258 VDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDD 317

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
           +TF+ +L AC+HAGL+D G   F AM   ++I P+++HYGC+VDLL RA   D+A A ++
Sbjct: 318 VTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIE 377

Query: 497 TMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
            M +K ++ +W +LLGACR  G  +L E + + ++ELEP++ G YV+LSN+YAG  +WD 
Sbjct: 378 NMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDH 437

Query: 557 VATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE-KSG 615
              +R ++ +KG++K PGCS IE+  ++H+F+ GD+ H Q++ IY M++E+   +    G
Sbjct: 438 ALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGG 497

Query: 616 FVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATK 675
            VP T+ VL+D++EE KE +L  HSEKLAIA GLIST  G+ IRIVKNLRVC +CHS  K
Sbjct: 498 HVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLK 557

Query: 676 LISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           + SK++NREI+ARDR+RFHHFK+G+CSC D+W
Sbjct: 558 VTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 589



 Score =  228 bits (582), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 132/405 (32%), Positives = 224/405 (55%), Gaps = 9/405 (2%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGL-HNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           L + CT++   KQ H+ +++T L HN  F+ SKLI   A+S  GDL+YA  +F  ++ P+
Sbjct: 17  LKTHCTSISKTKQAHALLLRTHLLHNPLFS-SKLISFLALSHSGDLNYARKLFTQMQNPD 75

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
             I N +IRG++ S +P  A+  Y  M+  G   + YT+PF+L +CA++ A+  G++ H 
Sbjct: 76  PFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHC 135

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
            VLK G  SD FV  +LI  Y   G    A  VF++S++RD V++  +I  + ++G  + 
Sbjct: 136 EVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEK 195

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL---IEGHGLGSNLHVT 271
           A  L DEM  + +N  P+E T+V+++ ACA +G+LE G ++ S    ++   +  +L + 
Sbjct: 196 AFDLLDEMT-KLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLE 254

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
            AL+DMY+KCG +  A  +F  +  R+V +WN +IGG       ++A+ LF QM    + 
Sbjct: 255 TALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLM 314

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+DVTF+++L AC++ G +D G  +   +    Q    +  +  ++D+  +   +  A  
Sbjct: 315 PDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALA 374

Query: 392 VFDGMGYKTLAS-WNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
             + M  K  +  W  ++      G  D A  +  R+I   L+PD
Sbjct: 375 FIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVI--ELEPD 417


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 263/584 (45%), Positives = 368/584 (63%), Gaps = 24/584 (4%)

Query: 144 SAISEGKQIHAHVLKLGLESDP---FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYT 200
           S +S+ KQ+HA  L+     +P   F++  ++ + +   ++  A  VF+      +  + 
Sbjct: 116 SDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWN 175

Query: 201 ALITGYA---SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
            LI   A   SR   ++A  L+ +M  R E+  P++ T   VL ACA++     G  V  
Sbjct: 176 TLIRACAHDVSRK--EEAFMLYRKMLERGES-SPDKHTFPFVLKACAYIFGFSEGKQVHC 232

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
            I  HG G +++V N LI +Y  CG L  AR +F+ + +R ++SWN MI       +Y  
Sbjct: 233 QIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDS 292

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK--NHQKLNNVSLWTS 375
           AL LFR+M Q + EP+  T  SVL ACA LG+L LG W HA++ +  +     +V +  S
Sbjct: 293 ALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNS 351

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG--EGLQ 433
           LI+MY KCG+++ AEQVF GM  + LASWNAMI G A HG+A++A++ F RM+   E ++
Sbjct: 352 LIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVR 411

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
           P+ +TFVG+L ACNH G ++ GRQYF+ M++DY I P L+HYGC+VDL+ RAG   EA  
Sbjct: 412 PNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAID 471

Query: 494 LLKTMEMKPDAAIWTSLLGACRVHG-RLELGESVAKHLLELEPEN-------PGAYVLLS 545
           ++ +M MKPDA IW SLL AC   G  +EL E +A++++  + +N        GAYVLLS
Sbjct: 472 MVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLS 531

Query: 546 NMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLD 605
            +YA A RW+DV  +R  +++ G++K PGCSSIE+  + HEF  GD  HPQ+K IY+ L 
Sbjct: 532 RVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLK 591

Query: 606 EIDALLEKSGFVPDTSEV-LYD-MDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKN 663
            ID  L   G++PD S+  L D  ++  KE +L  HSE+LAIA+GLI+  P T IRI KN
Sbjct: 592 VIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKN 651

Query: 664 LRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           LRVC +CH  TKLISK+FN EII RDR RFHHFKDG+CSC DYW
Sbjct: 652 LRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 695



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 131/401 (32%), Positives = 217/401 (54%), Gaps = 18/401 (4%)

Query: 29  QNQPSLALLSKCTNMQNIKQVHSQIIKTGLHN---TQFALSKLIEICAVSPFGDLSYALL 85
            +Q   +L   C++M  +KQ+H+  ++T       T F   K++++   S F D++YA  
Sbjct: 104 HHQRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQL--SSSFSDVNYAFR 161

Query: 86  VFETIREPNQVIWNNIIRG--HSLSSSPVVAIKFYVRMILSG-FVPNTYTFPFILKSCAK 142
           VF++I   +  +WN +IR   H +S     A   Y +M+  G   P+ +TFPF+LK+CA 
Sbjct: 162 VFDSIENHSSFMWNTLIRACAHDVSRKEE-AFMLYRKMLERGESSPDKHTFPFVLKACAY 220

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
           I   SEGKQ+H  ++K G   D +V+  LI++Y   G L+ AR VF++   R  VS+ ++
Sbjct: 221 IFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSM 280

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
           I      G  D A QLF EM   + +F P+  T+ +VLSACA +GSL LG W  + +   
Sbjct: 281 IDALVRFGEYDSALQLFREM---QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRK 337

Query: 263 ---GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEAL 319
               +  ++ V N+LI+MY KCG L  A  +F+ ++KRD+ SWN MI G+      +EA+
Sbjct: 338 CDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAM 397

Query: 320 MLFRQML--QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
             F +M+  + N+ PN VTF+ +L AC + G ++ G+     + +++     +  +  ++
Sbjct: 398 NFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIV 457

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHGKA 417
           D+ A+ G I  A  +   M  K  A  W +++      G +
Sbjct: 458 DLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGAS 498


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 240/572 (41%), Positives = 371/572 (64%), Gaps = 4/572 (0%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           +LK C     + +G+ +HAH+L+     D  +  +L+NMYA+ G LE AR VF K   RD
Sbjct: 66  LLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRD 125

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
            V++T LI+GY+      DA   F++M      + PNE T+ +V+ A A       G+ +
Sbjct: 126 FVTWTTLISGYSQHDRPCDALLFFNQM--LRFGYSPNEFTLSSVIKAAAAERRGCCGHQL 183

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
                  G  SN+HV +AL+D+Y++ G +  A+ +F+++E R+ +SWN +I G+   S  
Sbjct: 184 HGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGT 243

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
           ++AL LF+ ML+    P+  ++ S+  AC+  G L+ GKW+HAY+ K+ +KL   +   +
Sbjct: 244 EKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFA-GNT 302

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           L+DMYAK G+I  A ++FD +  + + SWN++++  A HG   +A+  F  M   G++P+
Sbjct: 303 LLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPN 362

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
           +I+F+ VL+AC+H+GLLD G  Y+  M +D  I P+  HY  +VDLLGRAG  + A   +
Sbjct: 363 EISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFI 421

Query: 496 KTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555
           + M ++P AAIW +LL ACR+H   ELG   A+H+ EL+P++PG +V+L N+YA  GRW+
Sbjct: 422 EEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWN 481

Query: 556 DVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSG 615
           D A +R ++ + G+KK P CS +E+ + +H F+  D+ HPQ + I    +E+ A +++ G
Sbjct: 482 DAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELG 541

Query: 616 FVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATK 675
           +VPDTS V+  +D++ +E  L +HSEK+A+A+ L++T PG+TI I KN+RVCG+CH+A K
Sbjct: 542 YVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIK 601

Query: 676 LISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           L SK+  REII RD NRFHHFKDGNCSC DYW
Sbjct: 602 LASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 131/440 (29%), Positives = 222/440 (50%), Gaps = 15/440 (3%)

Query: 1   MALPPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQ---VHSQIIKTG 57
           +  P + L L  S      S  P  +   N     LL KCT  + + Q   VH+ I+++ 
Sbjct: 35  LKFPSNDLLLRTSSNDLEGSYIPADRRFYN----TLLKKCTVFKLLIQGRIVHAHILQSI 90

Query: 58  LHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKF 117
             +     + L+ + A    G L  A  VFE + + + V W  +I G+S    P  A+ F
Sbjct: 91  FRHDIVMGNTLLNMYAKC--GSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLF 148

Query: 118 YVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ 177
           + +M+  G+ PN +T   ++K+ A       G Q+H   +K G +S+  V ++L+++Y +
Sbjct: 149 FNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTR 208

Query: 178 NGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVV 237
            G ++ A+LVF+    R+ VS+ ALI G+A R   + A +LF  M    + F P+  +  
Sbjct: 209 YGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGM--LRDGFRPSHFSYA 266

Query: 238 TVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR 297
           ++  AC+  G LE G WV + +   G        N L+DMY+K G +  AR +F+ + KR
Sbjct: 267 SLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKR 326

Query: 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357
           DV+SWN ++  Y      KEA+  F +M +  I PN+++FLSVL AC++ G LD G W +
Sbjct: 327 DVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEG-WHY 385

Query: 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGK 416
             + K    +     + +++D+  + G++  A +  + M  + T A W A+++   MH  
Sbjct: 386 YELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKN 445

Query: 417 ADKALSLFSRMIGEGLQPDD 436
            +  L  ++      L PDD
Sbjct: 446 TE--LGAYAAEHVFELDPDD 463


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 263/584 (45%), Positives = 368/584 (63%), Gaps = 24/584 (4%)

Query: 144 SAISEGKQIHAHVLKLGLESDP---FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYT 200
           S +S+ KQ+HA  L+     +P   F++  ++ + +   ++  A  VF+      +  + 
Sbjct: 59  SDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWN 118

Query: 201 ALITGYA---SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
            LI   A   SR   ++A  L+ +M  R E+  P++ T   VL ACA++     G  V  
Sbjct: 119 TLIRACAHDVSRK--EEAFMLYRKMLERGES-SPDKHTFPFVLKACAYIFGFSEGKQVHC 175

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
            I  HG G +++V N LI +Y  CG L  AR +F+ + +R ++SWN MI       +Y  
Sbjct: 176 QIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDS 235

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK--NHQKLNNVSLWTS 375
           AL LFR+M Q + EP+  T  SVL ACA LG+L LG W HA++ +  +     +V +  S
Sbjct: 236 ALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNS 294

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG--EGLQ 433
           LI+MY KCG+++ AEQVF GM  + LASWNAMI G A HG+A++A++ F RM+   E ++
Sbjct: 295 LIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVR 354

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
           P+ +TFVG+L ACNH G ++ GRQYF+ M++DY I P L+HYGC+VDL+ RAG   EA  
Sbjct: 355 PNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAID 414

Query: 494 LLKTMEMKPDAAIWTSLLGACRVHG-RLELGESVAKHLLELEPEN-------PGAYVLLS 545
           ++ +M MKPDA IW SLL AC   G  +EL E +A++++  + +N        GAYVLLS
Sbjct: 415 MVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLS 474

Query: 546 NMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLD 605
            +YA A RW+DV  +R  +++ G++K PGCSSIE+  + HEF  GD  HPQ+K IY+ L 
Sbjct: 475 RVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLK 534

Query: 606 EIDALLEKSGFVPDTSEV-LYD-MDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKN 663
            ID  L   G++PD S+  L D  ++  KE +L  HSE+LAIA+GLI+  P T IRI KN
Sbjct: 535 VIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKN 594

Query: 664 LRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           LRVC +CH  TKLISK+FN EII RDR RFHHFKDG+CSC DYW
Sbjct: 595 LRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638



 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 141/438 (32%), Positives = 231/438 (52%), Gaps = 30/438 (6%)

Query: 4   PPSSLT----------LSPSILHFPPSSDPPYKLLQN--QPSLALLSKCTNMQNIKQVHS 51
           PP+++T          + P   H PP+S P      N  Q   +L   C++M  +KQ+H+
Sbjct: 10  PPTTITYYHPMSIGLLVHPLSPHIPPASSPSASTAGNHHQRIFSLAETCSDMSQLKQLHA 69

Query: 52  QIIKTGLHN---TQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRG--HS 106
             ++T       T F   K++++   S F D++YA  VF++I   +  +WN +IR   H 
Sbjct: 70  FTLRTTYPEEPATLFLYGKILQLS--SSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHD 127

Query: 107 LSSSPVVAIKFYVRMILSG-FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
           +S     A   Y +M+  G   P+ +TFPF+LK+CA I   SEGKQ+H  ++K G   D 
Sbjct: 128 VSRKEE-AFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDV 186

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           +V+  LI++Y   G L+ AR VF++   R  VS+ ++I      G  D A QLF EM   
Sbjct: 187 YVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREM--- 243

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH---GLGSNLHVTNALIDMYSKCG 282
           + +F P+  T+ +VLSACA +GSL LG W  + +       +  ++ V N+LI+MY KCG
Sbjct: 244 QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 303

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML--QSNIEPNDVTFLSV 340
            L  A  +F+ ++KRD+ SWN MI G+      +EA+  F +M+  + N+ PN VTF+ +
Sbjct: 304 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 363

Query: 341 LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT 400
           L AC + G ++ G+     + +++     +  +  ++D+ A+ G I  A  +   M  K 
Sbjct: 364 LIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKP 423

Query: 401 LAS-WNAMISGLAMHGKA 417
            A  W +++      G +
Sbjct: 424 DAVIWRSLLDACCKKGAS 441


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 259/651 (39%), Positives = 386/651 (59%), Gaps = 31/651 (4%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G+LS A  +F  + E + V WN ++ G + +     A K + +M+    V N  ++  +L
Sbjct: 136 GNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML----VKNEISWNGLL 191

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
            +  +   I + +++    +   + S       L+  Y +   L+ AR +F++  +RD +
Sbjct: 192 SAYVQNGRIEDARRLFDSKMDWEIVS----WNCLMGGYVRKKRLDDARSLFDRMPVRDKI 247

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIRE--------ENFVPNE--STVVTVLSACAHMG 247
           S+  +ITGYA  G L +AR+LF+E+PIR+          FV N        +        
Sbjct: 248 SWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKN 307

Query: 248 SLELGNWVCSLIEGHGL-----------GSNLHVTNALIDMYSKCGDLVKARDLFESIEK 296
            +     +   ++   +             N    N ++  Y++CG++ +A+ LF+ + +
Sbjct: 308 EVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQ 367

Query: 297 RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
           RD ISW  MI GY  +   +EAL LF +M +     N       L +CA + AL+LGK +
Sbjct: 368 RDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQL 427

Query: 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGK 416
           H  + K   +   ++   +L+ MY KCG+I+ A  VF+ +  K + SWN MI+G A HG 
Sbjct: 428 HGRLVKAGFQTGYIAG-NALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGF 486

Query: 417 ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG 476
             +AL+LF  M    ++PDD+T VGVLSAC+H G +D G +YFN+M Q+Y I+   +HY 
Sbjct: 487 GKEALALFESM-KMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYT 545

Query: 477 CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536
           CM+DLLGRAG  DEA  L+K+M   PDAA W +LLGA R+HG  ELGE  A+ + E+EP+
Sbjct: 546 CMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPD 605

Query: 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQ 596
           N G YVLLSN+YA +GRW +V  +R+++ DKG+KKVPG S +E+ +  H F VGD  HP+
Sbjct: 606 NSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPE 665

Query: 597 SKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGT 656
           ++ IY  L+E+D  L+K GFV  T  VL+D++EE KE  L +HSEKLA+A+G++S  PG 
Sbjct: 666 AERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGR 725

Query: 657 TIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            IR++KNLRVC +CH+A K ISKI  R+II RD NRFHHF +G+CSC DYW
Sbjct: 726 PIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 177/402 (44%), Gaps = 54/402 (13%)

Query: 161 LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD 220
           ++SD       I+ Y + G+ ESA  VFN    R  V+Y A+I+GY S    D AR++F+
Sbjct: 56  VDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFE 115

Query: 221 EMPIRE--------ENFVPN--------------ESTVVT---VLSACAHMGSLELGNWV 255
           +MP R+          +V N              E  VV+   +LS  A  G +E    +
Sbjct: 116 KMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKI 175

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
              +    L  N    N L+  Y + G +  AR LF+S    +++SWN ++GGY      
Sbjct: 176 FDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRL 231

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
            +A  LF +M       + +++  ++   A  G L   + +   +      + +V  WT+
Sbjct: 232 DDARSLFDRMPVR----DKISWNIMITGYAQNGLLSEARRLFEEL-----PIRDVFAWTA 282

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           ++  + + G +  A ++F+ M  K   SWNAMI+G     + +KA  LF +M        
Sbjct: 283 MVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSW 342

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
           + T V   + C   G +D  +  F+ M Q   IS     +  M+    ++G  +EA  L 
Sbjct: 343 N-TMVTGYAQC---GNIDQAKILFDEMPQRDCIS-----WAAMISGYAQSGQSEEALHLF 393

Query: 496 KTMEMKPDAAIWTS-----LLGACRVHGRLELGESVAKHLLE 532
             ++MK D  I         L +C     LELG+ +   L++
Sbjct: 394 --IKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVK 433



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 126/278 (45%), Gaps = 28/278 (10%)

Query: 293 SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL 352
           +I   D++ WN  I  Y      + AL +F  M + +     VT+ +++         D 
Sbjct: 54  TIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRST----VTYNAMISGYLSNNKFDC 109

Query: 353 GKWIHAYIDKNHQKLNNVSL--WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISG 410
            +       K  +K+ +  L  W  ++  Y K GN+ AA  +F+ M  K + SWNAM+SG
Sbjct: 110 AR-------KVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSG 162

Query: 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470
            A +G  ++A  +F +M    L  ++I++ G+LSA    G ++  R+ F     D K+  
Sbjct: 163 FAQNGFVEEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLF-----DSKMDW 213

Query: 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHL 530
           ++  + C++    R    D+A +L   M ++ D   W  ++     +G L    S A+ L
Sbjct: 214 EIVSWNCLMGGYVRKKRLDDARSLFDRMPVR-DKISWNIMITGYAQNGLL----SEARRL 268

Query: 531 LELEP-ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
            E  P  +  A+  + + +   G  D+   I   + +K
Sbjct: 269 FEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEK 306


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 250/686 (36%), Positives = 419/686 (61%), Gaps = 15/686 (2%)

Query: 28  LQNQPSLALLSKCTNMQNI---KQVHSQIIKTGLH-NTQF-ALSKLIEICAVSPFGDLSY 82
           + +  ++ +L  CT +  +   +++H+ ++K+G   N Q  AL  +   C     G +  
Sbjct: 264 MNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCNALLVMYTKC-----GRVDS 318

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           AL VF  I E + + WN+++  +  +     AI+F   M+  GF P+      +  +   
Sbjct: 319 ALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGH 378

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
           +  +  GK++HA+ +K  L+SD  V  +L++MY +   +E +  VF++  ++D +S+T +
Sbjct: 379 LGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTI 438

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
           IT YA      +A ++F E   ++E    +   + ++L AC+ + ++ L   +      +
Sbjct: 439 ITCYAQSSRHIEALEIFREA--QKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRN 496

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
           GL  +L V N +ID+Y +CG++  +  +FE++E++D+++W  MI  Y ++    EAL+LF
Sbjct: 497 GL-LDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLF 555

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
            +M  ++++P+ V  +S+L A   L +L  GK +H ++ + +  +   ++ +SL+DMY+ 
Sbjct: 556 AEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEE-AIVSSLVDMYSG 614

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
           CG++  A +VF+ +  K +  W AMI+   MHG   +A+ LF RM+  G+ PD ++F+ +
Sbjct: 615 CGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLAL 674

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
           L AC+H+ L++ G+ Y + M+  Y++ P  +HY C+VDLLGR+G  +EA   +K+M +KP
Sbjct: 675 LYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKP 734

Query: 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562
            + +W SLLGACRVH   EL    A  LLELEP+NPG YVL+SN++A  G+W++   +R 
Sbjct: 735 KSVVWCSLLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRA 794

Query: 563 RLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEK-SGFVPDTS 621
           R++++G++K P CS IE+G+ VH F   D  H  ++ I   L EI   L K  G+  DT 
Sbjct: 795 RISERGLRKDPACSWIEIGNNVHTFTTRDNSHRDAERINLKLAEITERLRKEGGYTEDTR 854

Query: 622 EVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIF 681
            VL+D+ EE K   L  HSE+LAI++GLI+T+PG  +RI KNLRVCG+CH  TKL+SK+F
Sbjct: 855 SVLHDVSEEEKVDVLHRHSERLAISFGLINTRPGMPLRIAKNLRVCGDCHEFTKLVSKLF 914

Query: 682 NREIIARDRNRFHHFKDGNCSCNDYW 707
           +R+I+ RD NRFHHF  G+CSC D+W
Sbjct: 915 DRDIVVRDANRFHHFSGGSCSCGDFW 940



 Score =  192 bits (488), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 133/487 (27%), Positives = 249/487 (51%), Gaps = 12/487 (2%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVI-WNNIIRGHS 106
           +VH   +K GL  + F  + LI + A    G L  A+ VFE + +   V  WN++I G  
Sbjct: 185 EVHGLAVKHGLDRSTFVANALIAMYA--KCGILDSAMRVFELMHDGRDVASWNSMISGCL 242

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +   + A+  +  M  +    N+YT   +L+ C +++ ++ G+++HA +LK G E +  
Sbjct: 243 QNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQ 302

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
            +  L+ MY + G ++SA  VF +   +D +S+ ++++ Y   G   +A +   EM    
Sbjct: 303 CNALLV-MYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEM--LR 359

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
             F P+ + +V++ SA  H+G L  G  V +      L S+  V N L+DMY KC  +  
Sbjct: 360 GGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEY 419

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           +  +F+ +  +D ISW  +I  Y  +S + EAL +FR+  +  I+ + +   S+L AC+ 
Sbjct: 420 SAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSG 479

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
           L  + L K +H Y  +N   L ++ +   +ID+Y +CG +  + ++F+ +  K + +W +
Sbjct: 480 LETILLAKQLHCYAIRN--GLLDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTS 537

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI-QD 465
           MI+  A  G  ++AL LF+ M    +QPD +  V +L A      L  G++    +I ++
Sbjct: 538 MINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRN 597

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
           + +   +     +VD+    G    A  +   ++ K D  +WT+++ A  +HG  +    
Sbjct: 598 FHMEEAI--VSSLVDMYSGCGSLSGALKVFNAVKCK-DMVLWTAMINATGMHGHGKQAID 654

Query: 526 VAKHLLE 532
           + K +L+
Sbjct: 655 LFKRMLQ 661



 Score =  191 bits (486), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 159/565 (28%), Positives = 258/565 (45%), Gaps = 40/565 (7%)

Query: 48  QVHSQIIKTGL--HNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           QVH+  + TG    +  F  +KL+ +      G ++ A L+F+ +       WN +I  +
Sbjct: 79  QVHAHAVATGSLEGDDGFLATKLLFM--YGKCGRVADARLLFDGMSSRTVFSWNALIGAY 136

Query: 106 SLSSSPVVAIKFYVRMIL---SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE 162
             S S   A+  Y  M L   SG  P+  T   +LK+         G ++H   +K GL+
Sbjct: 137 LSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLD 196

Query: 163 SDPFVHTSLINMYAQNGELESARLVFN-KSSLRDAVSYTALITGYASRGYLDDARQLFDE 221
              FV  +LI MYA+ G L+SA  VF      RD  S+ ++I+G    G    A  LF  
Sbjct: 197 RSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRG 256

Query: 222 MPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC 281
           M  +      N  T V VL  C  +  L LG  + + +   G   N+   NAL+ MY+KC
Sbjct: 257 M--QRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQC-NALLVMYTKC 313

Query: 282 GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
           G +  A  +F  I+++D ISWN M+  Y     Y EA+    +ML+   +P+    +S+ 
Sbjct: 314 GRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLS 373

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLN-NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT 400
            A  +LG L  GK +HAY  K  Q+L+ +  +  +L+DMY KC  I+ +  VFD M  K 
Sbjct: 374 SAVGHLGWLLNGKEVHAYAIK--QRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKD 431

Query: 401 LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFN 460
             SW  +I+  A   +  +AL +F     EG++ D +    +L AC+    + + +Q   
Sbjct: 432 HISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHC 491

Query: 461 AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRL 520
             I++  +   +++   ++D+ G  G    +  + +T+E K D   WTS++      G L
Sbjct: 492 YAIRNGLLDLVVKNR--IIDIYGECGEVYHSLKMFETVEQK-DIVTWTSMINCYANSGLL 548

Query: 521 ELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEV 580
                              A VL + M +   + D VA +        +  + G SS+  
Sbjct: 549 N-----------------EALVLFAEMQSTDVQPDSVALVSI------LGAIGGLSSLAK 585

Query: 581 GSVVHEFLVGDKVHPQSKHIYEMLD 605
           G  VH FL+    H +   +  ++D
Sbjct: 586 GKEVHGFLIRRNFHMEEAIVSSLVD 610



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 134/424 (31%), Positives = 210/424 (49%), Gaps = 12/424 (2%)

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG-LESDP-FVHTSLINMYAQNGELE 182
           G  P    + ++L   A   A+++G Q+HAH +  G LE D  F+ T L+ MY + G + 
Sbjct: 53  GRSPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVA 112

Query: 183 SARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV-PNESTVVTVLS 241
            ARL+F+  S R   S+ ALI  Y S G   +A  ++  M +   + V P+  T+ +VL 
Sbjct: 113 DARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLK 172

Query: 242 ACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI-EKRDVI 300
           A    G    G  V  L   HGL  +  V NALI MY+KCG L  A  +FE + + RDV 
Sbjct: 173 ASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVA 232

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           SWN MI G      + +AL LFR M ++ +  N  T + VL  C  L  L+LG+ +HA +
Sbjct: 233 SWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAAL 292

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
            K+  ++N      +L+ MY KCG + +A +VF  +  K   SWN+M+S    +G   +A
Sbjct: 293 LKSGSEVNIQC--NALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEA 350

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
           +   S M+  G QPD    V + SA  H G L  G++     I+  ++    Q    ++D
Sbjct: 351 IEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQ-RLDSDTQVGNTLMD 409

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR----LELGESVAKHLLELEPE 536
           +  +    + +  +   M +K D   WT+++       R    LE+     K  ++++P 
Sbjct: 410 MYMKCRYIEYSAHVFDRMRIK-DHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPM 468

Query: 537 NPGA 540
             G+
Sbjct: 469 MIGS 472


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 259/661 (39%), Positives = 404/661 (61%), Gaps = 8/661 (1%)

Query: 52  QIIKTGLHNTQFALSKLIEICAVSPF---GDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           + I + +  ++ +L   +    V+ +   G L+ A  VF+ +   +   WN++I  +S+S
Sbjct: 30  KFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSIS 89

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVH 168
                A   + RM   G   +  TF  IL +C     +  GK +   + +   E D FV 
Sbjct: 90  ERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQHGKHVRESISETSFELDLFVG 149

Query: 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
           T+LI MYA+    E+A  VF +   ++ ++++A+IT +A  G+  +A + F  M  ++E 
Sbjct: 150 TALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMM--QQEG 207

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC--GDLVK 286
            +PN  T +++L+       LE  + +  LI  HGL     ++NAL+++Y +C  G+L  
Sbjct: 208 ILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDV 267

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A  + + ++++ + +WNV+I GYT     +EAL  ++++    I  + VTF+SVL AC  
Sbjct: 268 AEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTS 327

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
             +L  GK IH+   +     ++V +  +L +MY+KCG+++ A ++FD M  ++  SWN 
Sbjct: 328 STSLAEGKMIHSNAVECGLD-SDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNG 386

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
           M+   A HG++++ L L  +M  EG++ + ITFV VLS+C+HAGL+  G QYF+++  D 
Sbjct: 387 MLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDR 446

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
            I  K +HYGC+VDLLGRAG   EAE  +  M  +P+   W SLLGACRVH  L+ G+  
Sbjct: 447 GIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGACRVHKDLDRGKLA 506

Query: 527 AKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHE 586
           A+ LLEL+P N  A V+LSN+Y+  G W + A +R  +  + +KKVPG SSI+V + VHE
Sbjct: 507 ARKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHE 566

Query: 587 FLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIA 646
           F V D  HP++  IY+ ++E+   + ++G+VPDT  VL+D+DEE KE  L++HSEKLAIA
Sbjct: 567 FRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIA 626

Query: 647 YGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDY 706
           +GLIST   +++ I KNLRVC +CH+ATK ISKI  REI+ RD +RFHHF+DG+CSC DY
Sbjct: 627 FGLISTPEKSSLHIFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDY 686

Query: 707 W 707
           W
Sbjct: 687 W 687



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 206/421 (48%), Gaps = 16/421 (3%)

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           M+L G   N  TF  +L S     A+ +GK IH+ V +     D FV+T+L+N Y + G 
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
           L  AR VF+    R   ++ ++I+ Y+      +A  +F  M  + E    +  T +++L
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRM--QHEGERCDRVTFLSIL 118

Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVI 300
            AC +  +L+ G  V   I       +L V  ALI MY++C     A  +F  ++++++I
Sbjct: 119 DACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLI 178

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           +W+ +I  +       EAL  FR M Q  I PN VTF+S+L        L+    IH  I
Sbjct: 179 TWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLI 238

Query: 361 DKNHQKLNNVSLWTSLIDMYAKC--GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKAD 418
            + H   +  ++  +L+++Y +C  G +  AE +   M  + + +WN +I+G  +HG++ 
Sbjct: 239 TE-HGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSR 297

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ---DYKISPKLQHY 475
           +AL  + R+  E +  D +TF+ VL+AC  +  L  G+   +  ++   D  +  K    
Sbjct: 298 EALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVK---- 353

Query: 476 GCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEP 535
             + ++  + G  + A  +  +M ++  A  W  +L A   HG     E V K + ++E 
Sbjct: 354 NALTNMYSKCGSMENARRIFDSMPIRS-AVSWNGMLQAYAQHGE---SEEVLKLIRKMEQ 409

Query: 536 E 536
           E
Sbjct: 410 E 410



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 165/324 (50%), Gaps = 8/324 (2%)

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           E    N  T + VL++     +L  G ++ S +       ++ V  AL++ Y+KCG L  
Sbjct: 4   EGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTD 63

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           AR +F+ +  R V +WN MI  Y+ +    EA  +F++M       + VTFLS+L AC  
Sbjct: 64  ARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVN 123

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
              L  GK +   I +   +L ++ + T+LI MYA+C + + A QVF  M  K L +W+A
Sbjct: 124 PENLQHGKHVRESISETSFEL-DLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSA 182

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA-CNHAGLLDIGRQYFNAMIQD 465
           +I+  A HG   +AL  F  M  EG+ P+ +TF+ +L+     +GL ++ R +   +I +
Sbjct: 183 IITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHL--LITE 240

Query: 466 YKISPKLQHYGCMVDLLGR--AGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR-LEL 522
           + +         +V++ GR   G  D AE +L+ M+ +   A W  L+    +HGR  E 
Sbjct: 241 HGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITA-WNVLINGYTLHGRSREA 299

Query: 523 GESVAKHLLELEPENPGAYVLLSN 546
            E+  +  LE  P +   ++ + N
Sbjct: 300 LETYQRLQLEAIPVDKVTFISVLN 323



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 153/303 (50%), Gaps = 6/303 (1%)

Query: 41  TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNN 100
           + ++ + ++H  I + GL +T    + L+ +      G+L  A ++ + + E     WN 
Sbjct: 226 SGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNV 285

Query: 101 IIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG 160
           +I G++L      A++ Y R+ L     +  TF  +L +C   ++++EGK IH++ ++ G
Sbjct: 286 LINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECG 345

Query: 161 LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD 220
           L+SD  V  +L NMY++ G +E+AR +F+   +R AVS+  ++  YA  G  ++  +L  
Sbjct: 346 LDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIR 405

Query: 221 EMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVTNALIDMYS 279
           +M   +E    N  T V+VLS+C+H G +  G  +  SL    G+         L+D+  
Sbjct: 406 KME--QEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLG 463

Query: 280 KCGDLVKARDLFESIEKR-DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
           + G L +A      +    ++++W  ++G      D     +  R++L+  ++P + +  
Sbjct: 464 RAGKLQEAEKYISKMPSEPEIVTWASLLGACRVHKDLDRGKLAARKLLE--LDPGNSSAS 521

Query: 339 SVL 341
            VL
Sbjct: 522 VVL 524


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 278/767 (36%), Positives = 431/767 (56%), Gaps = 105/767 (13%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           +AL SK +N++ ++Q H  ++   LH+  + +S L+  C        +Y   +F +   P
Sbjct: 5   VALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCT-RLHAHPAYVDSIFTSSPSP 63

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           +  +++ +++ +S   +    +  +         P  + + +++K   K      G   H
Sbjct: 64  DASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGK-----SGNMFH 118

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESAR---------------------------- 185
           A+VLKLG   D F+  ++++MYA+NG+++ AR                            
Sbjct: 119 AYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNET 178

Query: 186 ---LVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR----------------- 225
              ++FN    R+ +++T+++TGYA  G L+ AR+ FDEMP R                 
Sbjct: 179 EAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKEC 238

Query: 226 ------------EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
                       EE   P+++T V  +S+C+ +G   L + +  +I+   +  N  V  A
Sbjct: 239 PKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTA 298

Query: 274 LIDM--------------------------------YSKCGDLVKARDLFESIEKRDVIS 301
           L+DM                                Y++ G L  AR+LF+++ KRDV+S
Sbjct: 299 LLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVS 358

Query: 302 WNVMIGGYTHTSDYKEALMLFRQMLQS-NIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           WN MI GY    +   ++ LF++M+   +I+P++VT  SVL AC ++GAL L  W+   +
Sbjct: 359 WNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIV 418

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
            + + KL  +S + SLI MY+KCG++  A ++F  MG + + S+N +ISG A +G   +A
Sbjct: 419 REKNIKLG-ISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEA 477

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
           + L   M  EG++PD +T++GVL+AC+HAGLL+ G+  F + IQ    +P + HY CMVD
Sbjct: 478 IKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKS-IQ----APTVDHYACMVD 532

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540
           LLGRAG  DEA+ L+++M MKP A ++ SLL A R+H R+ LGE  A  L ELEP+N G 
Sbjct: 533 LLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGN 592

Query: 541 YVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHI 600
           YVLLSN+YA  GRW+DV  +R  +   G+KK  G S +E    VH+F VGD+ H QSK I
Sbjct: 593 YVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDI 652

Query: 601 YEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRI 660
           Y++L E++  +++ GFV D S  L D++EE KE  L  HSEKLAI + L+ ++ GTTIR+
Sbjct: 653 YKLLAELERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRV 712

Query: 661 VKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           VKNLR+C +CH+A K+ISK+  REI+ RD NRFH F +G CSC+DYW
Sbjct: 713 VKNLRICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 263/584 (45%), Positives = 368/584 (63%), Gaps = 24/584 (4%)

Query: 144 SAISEGKQIHAHVLKLGLESDP---FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYT 200
           S +S+ KQ+HA  L+     +P   F++  ++ + +   ++  A  VF+      +  + 
Sbjct: 50  SDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWN 109

Query: 201 ALITGYA---SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
            LI   A   SR   ++A  L+ +M  R E+  P++ T   VL ACA++     G  V  
Sbjct: 110 TLIRACAHDVSRK--EEAFMLYRKMLERGES-SPDKHTFPFVLKACAYIFGFSEGKQVHC 166

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
            I  HG G +++V N LI +Y  CG L  AR +F+ + +R ++SWN MI       +Y  
Sbjct: 167 QIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDS 226

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK--NHQKLNNVSLWTS 375
           AL LFR+M Q + EP+  T  SVL ACA LG+L LG W HA++ +  +     +V +  S
Sbjct: 227 ALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNS 285

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG--EGLQ 433
           LI+MY KCG+++ AEQVF GM  + LASWNAMI G A HG+A++A++ F RM+   E ++
Sbjct: 286 LIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVR 345

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
           P+ +TFVG+L ACNH G ++ GRQYF+ M++DY I P L+HYGC+VDL+ RAG   EA  
Sbjct: 346 PNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAID 405

Query: 494 LLKTMEMKPDAAIWTSLLGACRVHG-RLELGESVAKHLLELEPEN-------PGAYVLLS 545
           ++ +M MKPDA IW SLL AC   G  +EL E +A++++  + +N        GAYVLLS
Sbjct: 406 MVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLS 465

Query: 546 NMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLD 605
            +YA A RW+DV  +R  +++ G++K PGCSSIE+  + HEF  GD  HPQ+K IY+ L 
Sbjct: 466 RVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLK 525

Query: 606 EIDALLEKSGFVPDTSEV-LYD-MDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKN 663
            ID  L   G++PD S+  L D  ++  KE +L  HSE+LAIA+GLI+  P T IRI KN
Sbjct: 526 VIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKN 585

Query: 664 LRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           LRVC +CH  TKLISK+FN EII RDR RFHHFKDG+CSC DYW
Sbjct: 586 LRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 629



 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 141/438 (32%), Positives = 231/438 (52%), Gaps = 30/438 (6%)

Query: 4   PPSSLT----------LSPSILHFPPSSDPPYKLLQN--QPSLALLSKCTNMQNIKQVHS 51
           PP+++T          + P   H PP+S P      N  Q   +L   C++M  +KQ+H+
Sbjct: 1   PPTTITYYHPMSIGLLVHPLSPHIPPASSPSASTAGNHHQRIFSLAETCSDMSQLKQLHA 60

Query: 52  QIIKTGLHN---TQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRG--HS 106
             ++T       T F   K++++   S F D++YA  VF++I   +  +WN +IR   H 
Sbjct: 61  FTLRTTYPEEPATLFLYGKILQLS--SSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHD 118

Query: 107 LSSSPVVAIKFYVRMILSG-FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
           +S     A   Y +M+  G   P+ +TFPF+LK+CA I   SEGKQ+H  ++K G   D 
Sbjct: 119 VSRKEE-AFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDV 177

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           +V+  LI++Y   G L+ AR VF++   R  VS+ ++I      G  D A QLF EM   
Sbjct: 178 YVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREM--- 234

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH---GLGSNLHVTNALIDMYSKCG 282
           + +F P+  T+ +VLSACA +GSL LG W  + +       +  ++ V N+LI+MY KCG
Sbjct: 235 QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 294

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML--QSNIEPNDVTFLSV 340
            L  A  +F+ ++KRD+ SWN MI G+      +EA+  F +M+  + N+ PN VTF+ +
Sbjct: 295 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 354

Query: 341 LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT 400
           L AC + G ++ G+     + +++     +  +  ++D+ A+ G I  A  +   M  K 
Sbjct: 355 LIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKP 414

Query: 401 LAS-WNAMISGLAMHGKA 417
            A  W +++      G +
Sbjct: 415 DAVIWRSLLDACCKKGAS 432


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 257/578 (44%), Positives = 372/578 (64%), Gaps = 10/578 (1%)

Query: 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN---GELESARLVFNK 190
           P +L S  K ++  E  QI A+ +K   E   F +T LIN   ++     +  AR +F+ 
Sbjct: 34  PILLIS--KCNSERELMQIQAYAIKSHQEDVSF-NTKLINFCTESPTESSMSYARHLFDA 90

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250
            S  D V + ++  GY+      +   LF E  I E++ +P+  T  ++L ACA   +LE
Sbjct: 91  MSEPDIVIFNSIARGYSRSTNPLEVFNLFVE--ILEDDLLPDNYTFPSLLKACAVAKALE 148

Query: 251 LGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYT 310
            G  +  L    G+  N++V   LI+MY++C D+  AR +F+ I +  V+ +N MI GY 
Sbjct: 149 EGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYA 208

Query: 311 HTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNV 370
             +   EAL LFR+M   N++PN++T LSVL +CA LG+LDLGKWIH Y  K H     V
Sbjct: 209 RRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYA-KKHGFCKYV 267

Query: 371 SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE 430
            + T+LIDM+AKCG++  A  +F+ M YK   +W+AMI   A HG+A+ ++ +F RM  E
Sbjct: 268 KVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSE 327

Query: 431 GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
            +QPD+ITF+G+L+AC+H GL++ GR+YF+ M+ ++ I P ++HYG MVDLLGRAG  ++
Sbjct: 328 NVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLED 387

Query: 491 AEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAG 550
           A   +  + + P   +W  LL AC  H  LEL E V++ +LEL+  + G YV+LSN+YA 
Sbjct: 388 AYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERILELDDSHGGDYVILSNLYAR 447

Query: 551 AGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDAL 610
             +W+ V ++R  + D+   KVPGCSSIEV +VVHEF  GD V   +  ++  LDE+   
Sbjct: 448 NKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKE 507

Query: 611 LEKSGFVPDTSEVLY-DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGN 669
           L+ +G+VPDTS V++ DM ++ KE  L +HSEKLAIA+GL++T PGTTIR+VKNLRVC +
Sbjct: 508 LKLAGYVPDTSMVVHADMGDQEKEITLRYHSEKLAIAFGLLNTPPGTTIRVVKNLRVCRD 567

Query: 670 CHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           CHSA KLIS IF R+++ RD  RFHHF+DG CSC D+W
Sbjct: 568 CHSAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCRDFW 605



 Score =  255 bits (652), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 132/409 (32%), Positives = 241/409 (58%), Gaps = 12/409 (2%)

Query: 22  DPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF-GDL 80
           +PP  +L       L+SKC + + + Q+ +  IK+   +  F  +KLI  C  SP    +
Sbjct: 30  NPPNPIL-------LISKCNSERELMQIQAYAIKSHQEDVSFN-TKLINFCTESPTESSM 81

Query: 81  SYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSC 140
           SYA  +F+ + EP+ VI+N+I RG+S S++P+     +V ++    +P+ YTFP +LK+C
Sbjct: 82  SYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKAC 141

Query: 141 AKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYT 200
           A   A+ EG+Q+H   +KLG++ + +V  +LINMY +  ++++AR VF++      V Y 
Sbjct: 142 AVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYN 201

Query: 201 ALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE 260
           A+ITGYA R   ++A  LF EM  + +N  PNE T+++VLS+CA +GSL+LG W+    +
Sbjct: 202 AMITGYARRNRPNEALSLFREM--QGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAK 259

Query: 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALM 320
            HG    + V  ALIDM++KCG L  A  +FE++  +D  +W+ MI  Y +    + +++
Sbjct: 260 KHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSML 319

Query: 321 LFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMY 380
           +F +M   N++P+++TFL +L AC++ G ++ G+   +++      + ++  + S++D+ 
Sbjct: 320 MFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLL 379

Query: 381 AKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMI 428
            + G+++ A +  D +    T   W  +++  + H   + A  +  R++
Sbjct: 380 GRAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERIL 428


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 269/596 (45%), Positives = 362/596 (60%), Gaps = 25/596 (4%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHT---SLINMYAQNGELESA 184
           PN  +    L+   K   +   KQ+HAH++  GL      HT   S I + +       A
Sbjct: 4   PNPSSNHPTLQLLEKCKTLDTLKQVHAHMITTGL----IFHTYPLSRILLISSTIVFTHA 59

Query: 185 RLVFNKSSLRDAVSYTALITGYAS-RGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC 243
             +FN         Y  LI+  A+ + +   A  L+  + +      PN  T  ++  AC
Sbjct: 60  LSIFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRV-LTHTTLKPNGFTFPSLFKAC 118

Query: 244 AHMGSLELG----NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV 299
                L  G      V   +E      +  V  AL++ Y+KCG +   R LF  I K D+
Sbjct: 119 GSQPWLRHGRALHTHVLKFLEP---TCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDL 175

Query: 300 ISWNVMIGGYTHTSDY--------KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALD 351
            SWN ++  Y H S           E L LF +M +S I+ N+VT ++++ ACA LGAL 
Sbjct: 176 ASWNSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALS 235

Query: 352 LGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGL 411
            G W H Y+ K++ KLN+  + T+LIDMY+KCG +  A Q+FD + ++    +NAMI G 
Sbjct: 236 QGAWAHVYVLKHNLKLNHF-VGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGF 294

Query: 412 AMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK 471
           A+HG   +AL LF +M  EGL PDD+T V  + +C+H GL++ G   F +M + Y + PK
Sbjct: 295 AIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPK 354

Query: 472 LQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLL 531
           L+HYGC+VDLLGRAG   EAE  +  M MKP+A IW SLLGA RVHG LE+GE V KHL+
Sbjct: 355 LEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLI 414

Query: 532 ELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGD 591
           +LEPE  G YVLLSNMYA   RWDDV  +R  + D G+ KVPG S +EVG  +HEFL+GD
Sbjct: 415 QLEPETSGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGD 474

Query: 592 KVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLIS 651
           K HP+SK IY  L+E+   L + G  P T EVL+D++EE KE ALS+HSE+LAIA+ LI+
Sbjct: 475 KTHPRSKEIYLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIA 534

Query: 652 TKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +     IRI+KNLRVCG+CH+++KLISKI+ REII RDRNRFHHFK+G CSC+DYW
Sbjct: 535 SHHCAPIRIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 128/418 (30%), Positives = 217/418 (51%), Gaps = 19/418 (4%)

Query: 30  NQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFET 89
           N P+L LL KC  +  +KQVH+ +I TGL    + LS+++ I +   F   ++AL +F  
Sbjct: 9   NHPTLQLLEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLISSTIVF---THALSIFNH 65

Query: 90  IREPNQVIWNNIIRG-HSLSSSPVVAIKFYVRMIL-SGFVPNTYTFPFILKSCAKISAIS 147
           I  P   ++N +I    ++     +A   Y R++  +   PN +TFP + K+C     + 
Sbjct: 66  IPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLR 125

Query: 148 EGKQIHAHVLK-LGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGY 206
            G+ +H HVLK L    DPFV  +L+N YA+ G++ + R +FN+ S  D  S+ ++++ Y
Sbjct: 126 HGRALHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNSILSAY 185

Query: 207 A--SRGYLDDAR------QLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
              S    +D         LF EM  ++     NE T+V ++SACA +G+L  G W    
Sbjct: 186 VHNSGAICEDVSLSLEVLTLFIEM--QKSLIKANEVTLVALISACAELGALSQGAWAHVY 243

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
           +  H L  N  V  ALIDMYSKCG L  A  LF+ +  RD + +N MIGG+       +A
Sbjct: 244 VLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQA 303

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
           L LF++M    + P+DVT +  + +C+++G ++ G  +   + + +     +  +  L+D
Sbjct: 304 LDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVD 363

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           +  + G ++ AE+    M  K  A  W +++    +HG  +    +   +I   L+P+
Sbjct: 364 LLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLI--QLEPE 419


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 257/602 (42%), Positives = 378/602 (62%), Gaps = 43/602 (7%)

Query: 142 KISAISEGKQIHAHVLKLGL---ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVS 198
           K  ++ E  QIHA +L+  L      P ++  L   YA +G++  +  +F+++   D   
Sbjct: 38  KSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFL 97

Query: 199 YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           +TA I   +  G  D A  L+ ++   E N  PNE T  ++L +C    S + G  + + 
Sbjct: 98  FTAAINTASINGLKDQAFLLYVQLLSSEIN--PNEFTFSSLLKSC----STKSGKLIHTH 151

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKA------------------------------- 287
           +   GLG + +V   L+D+Y+K GD+V A                               
Sbjct: 152 VLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAA 211

Query: 288 RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVLPACAY 346
           R LF+S+ +RD++SWNVMI GY       +ALMLF+++L +   +P+++T ++ L AC+ 
Sbjct: 212 RALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQ 271

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
           +GAL+ G+WIH ++  +  +LN V + T LIDMY+KCG+++ A  VF+    K + +WNA
Sbjct: 272 IGALETGRWIHVFVKSSRIRLN-VKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNA 330

Query: 407 MISGLAMHGKADKALSLFSRMIG-EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
           MI+G AMHG +  AL LF+ M G  GLQP DITF+G L AC HAGL++ G + F +M Q+
Sbjct: 331 MIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQE 390

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
           Y I PK++HYGC+V LLGRAG    A   +K M M  D+ +W+S+LG+C++HG   LG+ 
Sbjct: 391 YGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKE 450

Query: 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVH 585
           +A++L+ L  +N G YVLLSN+YA  G ++ VA +R  + +KG+ K PG S+IE+ + VH
Sbjct: 451 IAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVH 510

Query: 586 EFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAI 645
           EF  GD+ H +SK IY ML +I   ++  G+VP+T+ VL D++E  KE +L  HSE+LAI
Sbjct: 511 EFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAI 570

Query: 646 AYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCND 705
           AYGLISTKPG+ ++I KNLRVC +CH+ TKLISKI  R+I+ RDRNRFHHF DG+CSC D
Sbjct: 571 AYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGD 630

Query: 706 YW 707
           +W
Sbjct: 631 FW 632



 Score =  209 bits (531), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 134/447 (29%), Positives = 225/447 (50%), Gaps = 46/447 (10%)

Query: 2   ALPPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLH-N 60
           +LP + L+ + +     P   PP KL        L+ K  ++  + Q+H+ I++  L  +
Sbjct: 10  SLPQNQLSTTATARFRLP---PPEKLA------VLIDKSQSVDEVLQIHAAILRHNLLLH 60

Query: 61  TQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVR 120
            ++ +  L    A +  G + ++L +F    +P+  ++   I   S++     A   YV+
Sbjct: 61  PRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQ 120

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           ++ S   PN +TF  +LKSC+  S    GK IH HVLK GL  DP+V T L+++YA+ G+
Sbjct: 121 LLSSEINPNEFTFSSLLKSCSTKS----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGD 176

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR--------------- 225
           + SA+ VF++   R  VS TA+IT YA +G ++ AR LFD M  R               
Sbjct: 177 VVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQH 236

Query: 226 ---------------EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
                          E    P+E TVV  LSAC+ +G+LE G W+   ++   +  N+ V
Sbjct: 237 GFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKV 296

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ-SN 329
              LIDMYSKCG L +A  +F    ++D+++WN MI GY      ++AL LF +M   + 
Sbjct: 297 CTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITG 356

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           ++P D+TF+  L ACA+ G ++ G  I   + + +     +  +  L+ +  + G +K A
Sbjct: 357 LQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRA 416

Query: 390 EQVFDGMGYKTLAS-WNAMISGLAMHG 415
            +    M     +  W++++    +HG
Sbjct: 417 YETIKNMNMDADSVLWSSVLGSCKLHG 443


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1111

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 260/673 (38%), Positives = 385/673 (57%), Gaps = 75/673 (11%)

Query: 30  NQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFET 89
             P+++LL   T  + I+Q+H+++   G       + + ++  A+S    L YA  + + 
Sbjct: 14  KHPAISLLDSGTTFKEIRQIHAKLYVDGTLKDDHLVGQFVKAVALSDHTYLDYANQILDR 73

Query: 90  IREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG--FVPNTYTFPFILKSCAKISAIS 147
             +P     N++IR H  S  P  +  FY R++ SG    P+ YT  F++++C  +    
Sbjct: 74  SDKPTLFALNSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACTGLGMRE 133

Query: 148 EGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA 207
            G Q+H   ++ G ++DP V                                T LI+ YA
Sbjct: 134 TGLQVHGMTIRRGFDNDPHVQ-------------------------------TGLISLYA 162

Query: 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
             G LD   ++F+                           S+   ++VC           
Sbjct: 163 ELGCLDSCHKVFN---------------------------SVSYPDFVCR---------- 185

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
                A++   ++CGD+  AR LFE + ++D I+WN MI GY    + +EAL LF  M  
Sbjct: 186 ----TAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQL 241

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
             ++ N V+ +SVL AC  LGALD G+W H+YI++N  K+  V L T+L+D+YAKCG++ 
Sbjct: 242 EGVKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKIKIT-VRLGTTLVDLYAKCGDMD 300

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
            A +VF GM  K + +W++ ++GLAM+G  +K L LFS M  +G+ P+ +TFV VL  C+
Sbjct: 301 KAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCS 360

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
             G +D G+++F++M  ++ I P+L HYGC+VDL  RAG  ++A ++++ M MK  AA+W
Sbjct: 361 VVGFVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQMPMKAHAAVW 420

Query: 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
           +SLL A R++  LELG   +K +LELE  N GAYVLLSN+YA +  WD+V+ +R  +  K
Sbjct: 421 SSLLHASRMYKNLELGVLASKKMLELETSNHGAYVLLSNIYADSDDWDNVSHVRQSMKSK 480

Query: 568 GMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
           G++K PGCS +EV   VHEF VGDK HP+   I  +  +I   L  +G+  DT+ V++D+
Sbjct: 481 GVRKQPGCSVMEVNGEVHEFFVGDKSHPKYNEIDAVWKDISRRLRLAGYKADTTPVMFDI 540

Query: 628 DEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIA 687
           DEE KE AL  HSEK AIA+G++S K    IRIVKNLRVCG+CH  + +ISKIFNREII 
Sbjct: 541 DEEEKEDALCLHSEKAAIAFGIMSLKADVPIRIVKNLRVCGDCHQVSMMISKIFNREIIV 600

Query: 688 RDRNRFHHFKDGN 700
           RDRNRFHHFKDG 
Sbjct: 601 RDRNRFHHFKDGR 613



 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/524 (40%), Positives = 310/524 (59%), Gaps = 8/524 (1%)

Query: 187  VFNKSSL-RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH 245
            +FN+  + RD   +     G   RGYL    ++   M   E  F PNE T ++++SAC H
Sbjct: 593  IFNREIIVRDRNRFHHFKDG---RGYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVH 649

Query: 246  MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVM 305
             G+ E G  +  L+   G+   + V NAL+++Y K GDL+ +  LFE +  ++++SWN M
Sbjct: 650  GGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTM 709

Query: 306  IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365
            I  +      +E L  F       ++P+  TFL+VL  C  +G + L + IH  I     
Sbjct: 710  IVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLI--MFC 767

Query: 366  KLN-NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF 424
              N N  + T+L+D+YAK G ++ +  VF  +      +W AM++  A HG    A+  F
Sbjct: 768  GFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHF 827

Query: 425  SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484
              M+  GL PD +TF  +L+AC+H+GL++ GR YF  M + Y+I P+L HY CMVDL+GR
Sbjct: 828  ELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGR 887

Query: 485  AGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL 544
            +GL  +A  L+K M M+P + +W +LLGACRV+   +LG   AK L ELEP +   Y++L
Sbjct: 888  SGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRNYIML 947

Query: 545  SNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEML 604
            SN+Y+ +G W D + IR  +  KG+ +  G S IE G+ +H+F+VGD  HP+S+ I + L
Sbjct: 948  SNIYSASGLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIHKFVVGDWSHPESEKIQKKL 1007

Query: 605  DEIDALLEKS-GFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKN 663
             EI   ++   GF   T  VL+D+DE+ KE  ++ HSEK+A+A+GL+   P   I I KN
Sbjct: 1008 KEIRKKMKSELGFKSRTEFVLHDVDEDVKEEMINQHSEKIAMAFGLLVISPMEPIIIRKN 1067

Query: 664  LRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            LR+CG+CH   K IS I  R II RD  RFHHF +G+CSC DYW
Sbjct: 1068 LRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLEGSCSCRDYW 1111



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 154/320 (48%), Gaps = 7/320 (2%)

Query: 120 RMILS--GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ 177
           RM+ S  GF PN  TF  ++ +C       EG  IH  V+K G+  +  V  +L+N+Y +
Sbjct: 625 RMMRSEVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGK 684

Query: 178 NGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVV 237
            G+L S+  +F   S+++ VS+  +I  +   G  ++    F+    R     P+++T +
Sbjct: 685 TGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMS--RWVGLKPDQATFL 742

Query: 238 TVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR 297
            VL  C  +G + L   +  LI   G  +N  +T AL+D+Y+K G L  +  +F  I   
Sbjct: 743 AVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSP 802

Query: 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357
           D ++W  M+  Y      ++A+  F  M+   + P+ VTF  +L AC++ G ++ G++  
Sbjct: 803 DSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYF 862

Query: 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGK 416
             + K ++    +  ++ ++D+  + G ++ A  +   M  + +   W A++    ++  
Sbjct: 863 ETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKD 922

Query: 417 ADKALSLFSRMIGEGLQPDD 436
                    R+    L+P D
Sbjct: 923 TQLGTKAAKRLF--ELEPRD 940



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 147/306 (48%), Gaps = 11/306 (3%)

Query: 34  LALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           L+++S C +  N ++   +H  ++K+G+      ++ L+ +   +  GDL  +  +FE +
Sbjct: 641 LSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKT--GDLISSCKLFEDL 698

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
              N V WN +I  H  +      + ++      G  P+  TF  +L+ C  I  +   +
Sbjct: 699 SVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQ 758

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            IH  ++  G  ++  + T+L+++YA+ G LE +  VF + +  D++++TA++  YA+ G
Sbjct: 759 GIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHG 818

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC-SLIEGHGLGSNLH 269
           Y  DA + F+ M        P+  T   +L+AC+H G +E G +   ++ + + +   L 
Sbjct: 819 YGRDAIKHFELMV--HYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLD 876

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVIS-WNVMIGGYTHTSDYKEALMLFRQMLQS 328
             + ++D+  + G L  A  L + +        W  ++G      D +      +++ + 
Sbjct: 877 HYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFE- 935

Query: 329 NIEPND 334
            +EP D
Sbjct: 936 -LEPRD 940


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 259/623 (41%), Positives = 377/623 (60%), Gaps = 35/623 (5%)

Query: 18  PPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF 77
           P S +  +  + + P L+LL  C +   +KQ+ +Q+I TGL    FA S+LI  CA+S  
Sbjct: 41  PTSWNTTHTYVLSNPLLSLLENCKSFSQLKQIQAQMILTGLILDGFASSRLISFCAISES 100

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMIL-SGFVPNTYTFPFI 136
            +L Y + +   ++ PN   WN +IRG   S +P   +  Y RM+  +G  P+ YT+ F+
Sbjct: 101 RNLDYCIKILNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFL 160

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
            K CA +     G +I   VLK+G + D +++  +I+M    GE   A  VF++  +RD 
Sbjct: 161 FKVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDL 220

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           VS+ +LI GY  R    +A  ++ +M    E+  P+E T++ V+SACA + SL+LG  + 
Sbjct: 221 VSWNSLINGYVRRRQPREAMGIYQQMIT--EHVKPDEVTMIGVVSACAQLESLKLGREIH 278

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYT------ 310
             IE  GL   + + NAL+DMY KCGDL   + LF+++ K+ V+SW  MI GY       
Sbjct: 279 RYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLD 338

Query: 311 ------HTSDYK-------------------EALMLFRQMLQSNIEPNDVTFLSVLPACA 345
                 H    K                   EAL LFR+M  SN++P+ VT L  L AC+
Sbjct: 339 MAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACS 398

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
            LGALD G W H YI K++  L +V+L T+LIDMYAKCGN+  A QVF+ M  +   +W 
Sbjct: 399 QLGALDTGMWTHNYIKKHNLSL-DVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWT 457

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
           A+I GLA++G  + A+  FS+MI  GL PD+ITF+GVL+AC H GL++ GR+YF+ M   
Sbjct: 458 AIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSR 517

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
           + +SP+ +HY CMV+LLGRAGL +EAE L+KTM M+ DA +W +L  AC +H  L +GE 
Sbjct: 518 FNLSPQPKHYSCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGER 577

Query: 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVH 585
            A  LL+L+P + G YVLL+NMY  AG+W++   IR  + ++G++K PG SSIEV  +++
Sbjct: 578 AASKLLDLDPHDSGIYVLLANMYREAGKWEEAQNIRKMMMERGVEKTPGSSSIEVNGIIN 637

Query: 586 EFLVGDKVHPQSKHIYEMLDEID 608
           EF+V DK HPQS+ IYE  + I+
Sbjct: 638 EFIVRDKSHPQSEQIYECFNLIN 660


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 247/564 (43%), Positives = 362/564 (64%), Gaps = 14/564 (2%)

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           +Q+HAH++  GL     + T LI++    G +  AR +F      D+  + +L+   +  
Sbjct: 44  QQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKF 103

Query: 210 GYLDDA-----RQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
           G+  D      R LF   P  + N+     T  +V+ ACA + +L LG  + S +   G 
Sbjct: 104 GFSIDTVLFYRRMLFSGAP--QSNY-----TFTSVIKACADLSALRLGKEIHSHVMVCGY 156

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
           GS+++V  ALI +Y+K  D+  A+ +F+++ +R +I+WN +I GY      +E++ LF  
Sbjct: 157 GSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHL 216

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           M++S  +P+  T +S+L +C+ LGALD G W+H Y D N   LN V L TSLI+MY +CG
Sbjct: 217 MMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLN-VVLGTSLINMYTRCG 275

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
           N+  A +VFD M  + + +W AMISG  MHG   +A+ LF+ M   G +P++ITFV VLS
Sbjct: 276 NVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLS 335

Query: 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT-MEMKPD 503
           AC H+GL+D GR+ F++M + Y + P ++H  CMVD+ GRAGL ++A   +K  +  +P 
Sbjct: 336 ACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPG 395

Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563
            A+WTS+LGACR+H   +LG  VA+H+L +EPENPG YV+LSN+YA AGR D V  +R  
Sbjct: 396 PAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNM 455

Query: 564 LNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEV 623
           +  + +KK  G S+IE+    + F +GDK HPQ+  IY  LDE+     +SG+VP    +
Sbjct: 456 MTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESL 515

Query: 624 LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNR 683
           ++D++EE ++ AL +HSEKLA+A+GL+ T  G TIRIVKNLR+C +CHSA K IS I +R
Sbjct: 516 MHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADR 575

Query: 684 EIIARDRNRFHHFKDGNCSCNDYW 707
           EII RD+ RFHHFKDG+CSC DYW
Sbjct: 576 EIIVRDKFRFHHFKDGSCSCLDYW 599



 Score =  245 bits (626), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 125/386 (32%), Positives = 230/386 (59%), Gaps = 6/386 (1%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           ALL     ++N++QVH+ II +GLH ++  L+KLI +   +  G ++YA  +F T+  P+
Sbjct: 32  ALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTA--GSITYARRLFPTVPNPD 89

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
             +++++++  S     +  + FY RM+ SG   + YTF  ++K+CA +SA+  GK+IH+
Sbjct: 90  SFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHS 149

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
           HV+  G  SD +V  +LI +YA+  +++ A+ VF+    R  +++ +LI+GY   G   +
Sbjct: 150 HVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQE 209

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274
           +  LF  M   E  F P+ +T+V++LS+C+ +G+L+ G W+    +G+G   N+ +  +L
Sbjct: 210 SIGLFHLM--MESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSL 267

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
           I+MY++CG++ KAR++F+S+++R+V++W  MI GY      ++A+ LF +M      PN+
Sbjct: 268 INMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNN 327

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           +TF++VL ACA+ G +D G+ + + + + +  +  V     ++DM+ + G +  A Q   
Sbjct: 328 ITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIK 387

Query: 395 GMGYKT--LASWNAMISGLAMHGKAD 418
               K    A W +M+    MH   D
Sbjct: 388 KFIPKEPGPAVWTSMLGACRMHRNFD 413


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 268/631 (42%), Positives = 371/631 (58%), Gaps = 51/631 (8%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPV-VAIKFYVRMILSGFVPNTYTFPFI 136
           GDL+ AL VFE++     V WN+++ G+S     + VA + + R      +P        
Sbjct: 19  GDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDR------IP-------- 64

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
                                    E D F +  ++  Y  N ++ESARL F++  ++D 
Sbjct: 65  -------------------------EPDIFSYNIMLACYLHNADVESARLFFDQMPVKDT 99

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
            S+  +I+G++  G +D AR+LF  MP+R      N  +   ++S     G L+L     
Sbjct: 100 ASWNTMISGFSQNGMMDQARELFLVMPVR------NSVSWNAMISGYVESGDLDLAK--- 150

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
            L E   + S +  T A+I  + K G +  A   FE +  +++++WN MI GY      +
Sbjct: 151 QLFEVAPVRSVVAWT-AMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAE 209

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
             L LF++M++S   PN  +  SVL  C+ L AL LGK +H  I K+    N ++  TSL
Sbjct: 210 NGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWN-ITAGTSL 268

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           + MY KCG+++ A ++F  M  K + +WNAMISG A HG  +KAL LF +M  EG++PD 
Sbjct: 269 LSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDW 328

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
           ITFV VLSACNHAG +D+G +YFN+M++DY +  K  HY C+VDLLGR G   EA  L+K
Sbjct: 329 ITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIK 388

Query: 497 TMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
            M  KP +AI+ +LLGACR+H  LEL E  AK+LL L+PE+   YV L+N+YA   RWD 
Sbjct: 389 KMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWDH 448

Query: 557 VATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGF 616
           VA +R  + D  + K PG S IEV SVVHEF  GD++HP+   I+E L+E++  +  +G+
Sbjct: 449 VAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGDRIHPELAFIHEKLNELERKMRLAGY 508

Query: 617 VPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKL 676
           VPD    L+D+ EE K+  L  HSEKLAIAYGLI    GT IR+ KNLRVCG+CHSATK 
Sbjct: 509 VPDLEYALHDVGEEQKKQILLRHSEKLAIAYGLIRMPLGTPIRVFKNLRVCGDCHSATKY 568

Query: 677 ISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           IS I  R II RD  RFHHF+ G CSC DYW
Sbjct: 569 ISAIEGRVIIVRDTTRFHHFRQGECSCGDYW 599



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 3/225 (1%)

Query: 71  ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNT 130
           I     FG +  A   FE +   N V WN +I G+  +      +K + RM+ SGF PN 
Sbjct: 168 ITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNP 227

Query: 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK 190
            +   +L  C+ +SA+  GKQ+H  + K  +  +    TSL++MY + G+LE A  +F  
Sbjct: 228 SSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLV 287

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250
              +D V++ A+I+GYA  G  + A  LFD+M  R+E   P+  T V VLSAC H G ++
Sbjct: 288 MPQKDVVTWNAMISGYAQHGAGEKALYLFDKM--RDEGMKPDWITFVAVLSACNHAGFVD 345

Query: 251 LG-NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
           LG  +  S++  +G+ +       ++D+  + G LV+A DL + +
Sbjct: 346 LGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKM 390


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 244/603 (40%), Positives = 373/603 (61%), Gaps = 5/603 (0%)

Query: 105 HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESD 164
           HS   SP  A++ + R +     P++ TF   L +CA++  +  G+ +       G + D
Sbjct: 84  HSRRGSPASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 165 PFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPI 224
            FV +SL+++YA+ G +  A  VF +   RD V+++ ++ G+ S G   DA Q++  M  
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRM-- 200

Query: 225 REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
           RE+    +E  ++ V+ AC    ++ +G  V   +  HG+  ++    +L+DMY+K G L
Sbjct: 201 REDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLL 260

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
             A  +F  +  R+ +SW+ MI G+       EAL LFR M  S I+P+    +S L AC
Sbjct: 261 DVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLAC 320

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
           + +G L LG+ +H +I +      N  L T+ IDMY+KCG++ +A+ +F+ +  + L  W
Sbjct: 321 SNIGFLKLGRSVHGFIVRRFD--FNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILW 378

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
           NAMI+    HG+   AL+LF  M   G++PD  TF  +LSA +H+GL++ G+ +F  M+ 
Sbjct: 379 NAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVN 438

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGE 524
            +KI+P  +HY C+VDLL R+GL +EA  LL +M+ +P  AIW +LL  C  + +LELGE
Sbjct: 439 HFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGE 498

Query: 525 SVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVV 584
           S+A ++LEL+P++ G   L+SN+YA   +WD V  +R  + D G KK+PGCSSIE+    
Sbjct: 499 SIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTR 558

Query: 585 HEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLA 644
           H F++ D+ HPQ + I   + ++D  + K G++P T  V +D++EE KE  LS+HSE+LA
Sbjct: 559 HVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLA 618

Query: 645 IAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCN 704
           IA+GL++T PGT + I+KNLRVCG+CH A K ISKI +REI+ RD  RFHHFKDG CSC 
Sbjct: 619 IAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCR 678

Query: 705 DYW 707
           DYW
Sbjct: 679 DYW 681


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 247/564 (43%), Positives = 362/564 (64%), Gaps = 14/564 (2%)

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           +Q+HAH++  GL     + T LI++    G +  AR +F      D+  + +L+   +  
Sbjct: 108 QQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKF 167

Query: 210 GYLDDA-----RQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
           G+  D      R LF   P  + N+     T  +V+ ACA + +L LG  + S +   G 
Sbjct: 168 GFSIDTVLFYRRMLFSGAP--QSNY-----TFTSVIKACADLSALRLGKEIHSHVMVCGY 220

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
           GS+++V  ALI +Y+K  D+  A+ +F+++ +R +I+WN +I GY      +E++ LF  
Sbjct: 221 GSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHL 280

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           M++S  +P+  T +S+L +C+ LGALD G W+H Y D N   LN V L TSLI+MY +CG
Sbjct: 281 MMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLN-VVLGTSLINMYTRCG 339

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
           N+  A +VFD M  + + +W AMISG  MHG   +A+ LF+ M   G +P++ITFV VLS
Sbjct: 340 NVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLS 399

Query: 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT-MEMKPD 503
           AC H+GL+D GR+ F++M + Y + P ++H  CMVD+ GRAGL ++A   +K  +  +P 
Sbjct: 400 ACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPG 459

Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563
            A+WTS+LGACR+H   +LG  VA+H+L +EPENPG YV+LSN+YA AGR D V  +R  
Sbjct: 460 PAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNM 519

Query: 564 LNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEV 623
           +  + +KK  G S+IE+    + F +GDK HPQ+  IY  LDE+     +SG+VP    +
Sbjct: 520 MTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESL 579

Query: 624 LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNR 683
           ++D++EE ++ AL +HSEKLA+A+GL+ T  G TIRIVKNLR+C +CHSA K IS I +R
Sbjct: 580 MHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADR 639

Query: 684 EIIARDRNRFHHFKDGNCSCNDYW 707
           EII RD+ RFHHFKDG+CSC DYW
Sbjct: 640 EIIVRDKFRFHHFKDGSCSCLDYW 663



 Score =  245 bits (626), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 125/386 (32%), Positives = 230/386 (59%), Gaps = 6/386 (1%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           ALL     ++N++QVH+ II +GLH ++  L+KLI +   +  G ++YA  +F T+  P+
Sbjct: 96  ALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTA--GSITYARRLFPTVPNPD 153

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
             +++++++  S     +  + FY RM+ SG   + YTF  ++K+CA +SA+  GK+IH+
Sbjct: 154 SFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHS 213

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
           HV+  G  SD +V  +LI +YA+  +++ A+ VF+    R  +++ +LI+GY   G   +
Sbjct: 214 HVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQE 273

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274
           +  LF  M   E  F P+ +T+V++LS+C+ +G+L+ G W+    +G+G   N+ +  +L
Sbjct: 274 SIGLFHLM--MESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSL 331

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
           I+MY++CG++ KAR++F+S+++R+V++W  MI GY      ++A+ LF +M      PN+
Sbjct: 332 INMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNN 391

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           +TF++VL ACA+ G +D G+ + + + + +  +  V     ++DM+ + G +  A Q   
Sbjct: 392 ITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIK 451

Query: 395 GMGYKT--LASWNAMISGLAMHGKAD 418
               K    A W +M+    MH   D
Sbjct: 452 KFIPKEPGPAVWTSMLGACRMHRNFD 477


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 268/709 (37%), Positives = 405/709 (57%), Gaps = 59/709 (8%)

Query: 4   PPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQF 63
           P SSL    S L  PP++      +      +L+     +  + Q+H+QII   L ++  
Sbjct: 65  PKSSL----SALFIPPTTPTEAHFI------SLIHGSKTILQLHQIHAQIIIHNLSSSSL 114

Query: 64  ALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMIL 123
             ++LI   ++     ++++L VF   +  N   +N +IRG + +S    AI  +  M+ 
Sbjct: 115 ITTQLISSSSLRK--SINHSLAVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLR 172

Query: 124 SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELES 183
           SG  P+  T+PF+LKS A + +   G  IH  +L+ G+E D FV  SL++MY +  +L S
Sbjct: 173 SGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGS 232

Query: 184 ARLVFNKSSLR-----DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVT 238
           A  VF++S  R      A+ +  LI G    G +  A +LF  MP ++EN          
Sbjct: 233 AFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMP-KKENV--------- 282

Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD 298
                         +W                 + LID ++K GD+ +A +LF+ + +++
Sbjct: 283 --------------SW-----------------STLIDGFAKNGDMDRAMELFDQMPEKN 311

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
           V+SW  M+ G++   D ++AL +F +ML+  + PN  T +S L ACA +G L+ G  IH 
Sbjct: 312 VVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHK 371

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKAD 418
           YI  N   L   +L T+L+DMYAKCGNI++A +VF     K++ +W  MI G A+HG ++
Sbjct: 372 YIKDNGLHLTE-ALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSE 430

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478
           +A++ F +M+  G++PD++ F+ +L+AC H+G +DIG  +F++M  DY I P ++HY  +
Sbjct: 431 QAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLI 490

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
           VD+LGR+G   EA   ++ M M PD  IW +L  ACR H + ++ +     LL+LEP + 
Sbjct: 491 VDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHT 550

Query: 539 GAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSK 598
           G Y+ LSN YA  G+W+D   +R  + ++G+ K  G S IEV   VH F+ GD  H  SK
Sbjct: 551 GNYIFLSNAYAALGQWEDAERVRVLMQNRGVHKNSGWSCIEVEGQVHRFVSGDHDHKDSK 610

Query: 599 HIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTI 658
            I   L+EI A   K G++P T  VL++M++E KE  L  H EKLA+A+ LI T PG TI
Sbjct: 611 AICLKLEEIMAGAVKQGYIPGTEWVLHNMEQEEKEDVLGSHGEKLALAFALICTSPGMTI 670

Query: 659 RIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           RIVKNL+VCG+CHS  K  SKI  REI+ RD  RFHHFKDG+CSC D+W
Sbjct: 671 RIVKNLQVCGDCHSLMKYASKISQREIMLRDMKRFHHFKDGSCSCRDHW 719


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 267/665 (40%), Positives = 403/665 (60%), Gaps = 10/665 (1%)

Query: 48  QVHSQIIKTGL-HNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           Q+H+  ++ GL   + F    L+   A   FG +S A  VF+ + E +   WN ++ G  
Sbjct: 88  QLHACALRLGLVRPSVFTSGSLVH--AYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLC 145

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            ++    A+  + RM+  G   +T T   +L  C  +        +H + +K GL+ + F
Sbjct: 146 RNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELF 205

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V  +LI++Y + G LE A+ VF+    RD V++ ++I+G   RG    A ++F  M  R 
Sbjct: 206 VCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGM--RG 263

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG-SNLHVTNALIDMYSKCGDLV 285
               P+  T+V++ SA A  G       +   +   G    ++   NA++DMY+K  ++ 
Sbjct: 264 SGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIE 323

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ-SNIEPNDVTFLSVLPAC 344
            A+ +F+S+  +D +SWN +I GY       EA+  +  M +   ++    TF+SVLPA 
Sbjct: 324 AAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAY 383

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
           ++LGAL  G  +HA   K    ++ V + T LID+YAKCG +  A  +F+ M  ++   W
Sbjct: 384 SHLGALQQGMRMHALSIKIGLNVD-VYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPW 442

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
           NA+ISGL +HG   +AL+LFSRM  EG++PD +TFV +L+AC+HAGL+D GR +F+ M  
Sbjct: 443 NAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQV 502

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGE 524
            Y I P  +HY CM D+LGRAG  DEA   ++ M +KPD+A+W +LLGACR+HG +E+G+
Sbjct: 503 TYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGK 562

Query: 525 SVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVV 584
             +++L EL+PEN G YVL+SNMYA  G+WD V  +R+ +  + ++K PG SSIEV   V
Sbjct: 563 VASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSV 622

Query: 585 HEFLVGDKV--HPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEK 642
           + F  G++   HPQ + I   L  + A +   G+V D S VL D++++ KE  L++HSE+
Sbjct: 623 NVFYSGNQTEPHPQHEEIQAELRSLLAKIRSVGYVSDYSFVLQDVEDDEKEHILNNHSER 682

Query: 643 LAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCS 702
           LAIA+G+I+T   T + I KNLRVCG+CH+ATK IS+I  REII RD NRFHHFKDG+CS
Sbjct: 683 LAIAFGIINTPSRTPLHIYKNLRVCGDCHNATKYISQITEREIIVRDSNRFHHFKDGHCS 742

Query: 703 CNDYW 707
           C D+W
Sbjct: 743 CGDFW 747


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 255/670 (38%), Positives = 397/670 (59%), Gaps = 45/670 (6%)

Query: 40  CTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWN 99
           C N++ + Q+H   IK+G+    + + KLI  CA+S    L YA  +     EP+  ++N
Sbjct: 182 CKNLRALTQIHGFFIKSGVDTDSYFIGKLILHCAISISDALPYARRLLLCFPEPDAFMFN 241

Query: 100 NIIRGHSLSSSPVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQIHAHVLK 158
            ++RG+S S  P  ++  +V M+  GF+ P++++F F++K+ A   ++  G Q+H   LK
Sbjct: 242 TLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQALK 301

Query: 159 LGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQL 218
            GL+S  FV T+LI MY + G +  AR VF++    + V++ A++T       +  AR++
Sbjct: 302 HGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREI 361

Query: 219 FDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMY 278
           FD+M +R                           +W                 N ++  Y
Sbjct: 362 FDKMLVRNHT------------------------SW-----------------NVMLAGY 380

Query: 279 SKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
            K G+L  A+ +F  +  RD +SW+ MI G++H   + E+   FR++L++ + PN+V+  
Sbjct: 381 IKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFRELLRAEMRPNEVSLT 440

Query: 339 SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
            VL AC+  GA + GK +H +++K+      VS+  +LIDMY++CGN+  A  VF+GM  
Sbjct: 441 GVLSACSQSGAFEFGKTLHGFVEKSGYSWI-VSVNNALIDMYSRCGNVPMARLVFEGMQE 499

Query: 399 K-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
           K ++ SW +MI+GLAMHG  ++A+ +F+ M   G+ PD+I+F+ +L AC+HAGL+  G  
Sbjct: 500 KRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYACSHAGLIKEGEG 559

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
           YF+ M + Y I P ++HYGCMVDL GR+G   +A + +  M + P A +W +LLGAC  H
Sbjct: 560 YFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAIVWRTLLGACSSH 619

Query: 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577
           G +EL E V + L EL+P N G  VLLSN+YA AG+W DVA+IR  +  + +KK+   S 
Sbjct: 620 GNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAGKWKDVASIRKSMIVQRIKKITAWSL 679

Query: 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEID-ALLEKSGFVPDTSEVLYDMDEEWKEGAL 636
           +EVG  +++F   +K        +E L EI   L +++G+ P+ +  LYD++EE KE  +
Sbjct: 680 VEVGKTMYKFTACEKKKEIDIEAHEKLKEIILRLRDEAGYAPEVASALYDVEEEEKEDQV 739

Query: 637 SHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHF 696
           S HSEKLA+A+ L     G  IRIVKNLR+C +CH+  KL S+++  EI+ RDRNRFH F
Sbjct: 740 SKHSEKLALAFALARLPKGANIRIVKNLRICRDCHAVMKLTSRVYGVEIVIRDRNRFHSF 799

Query: 697 KDGNCSCNDY 706
           KDG+CSC DY
Sbjct: 800 KDGSCSCGDY 809


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 253/556 (45%), Positives = 352/556 (63%), Gaps = 8/556 (1%)

Query: 151 QIHAHVLKLGLES---DP-FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGY 206
           QI A ++   + S   DP  +   LI   A +  +  A L+F   +  +  ++ A +   
Sbjct: 6   QIQAQLITSPIPSSVVDPNLIAVKLIGACADHANVRQAALIFAHLASPNIFAHNATLKAL 65

Query: 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS 266
           A   +   A Q F+          P+E T  +VL ACA +  +  G  + +++   G  S
Sbjct: 66  AQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFES 125

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFES--IEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
           NL V N+LIDMY K G L+ AR LF+   +  R+V+ WN MI GY     Y +A+ +FR 
Sbjct: 126 NLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRM 185

Query: 325 MLQ-SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383
           M Q   + PNDVT +SVLPACA+LGALDLGKWI  +I +    L  + L  +L DMYAKC
Sbjct: 186 MQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALG-LFLGNALADMYAKC 244

Query: 384 GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
           G I  A +VF+ M  + + SW+ +I GLAM+G AD+A   F  M+  G +P+D+ F+G+L
Sbjct: 245 GCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLL 304

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
           +AC HAGL+  G   FN M ++Y +SPK++HYGC+VDLL RAG  D+AE ++ +M MKP+
Sbjct: 305 TACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPN 364

Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563
             IW +LLG CR++     G+ V +H+LEL+ ++ G+YV L+N+Y+  GR DD A  R R
Sbjct: 365 VIIWGALLGGCRIYRDSGRGQRVVQHILELDSDHSGSYVYLANVYSSMGRLDDAAKCRLR 424

Query: 564 LNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEV 623
           + + G+ K PGCS IEV + VHEF +GD  HP+S  IY M+ E+   ++ +G+ P T  V
Sbjct: 425 MRENGVLKTPGCSWIEVDNTVHEFFMGDLSHPESNKIYSMIRELMWKMKLAGYKPKTDLV 484

Query: 624 LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNR 683
           ++ +DEE KE ALS HSEKLAIA+GLIST  GTTIR+VKNLR+C +CH A K+IS I  R
Sbjct: 485 VHSIDEEEKEDALSIHSEKLAIAFGLISTSEGTTIRVVKNLRICNDCHDAAKIISGIVKR 544

Query: 684 EIIARDRNRFHHFKDG 699
           EII RDR+RFHHFKDG
Sbjct: 545 EIIVRDRSRFHHFKDG 560



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 127/381 (33%), Positives = 205/381 (53%), Gaps = 12/381 (3%)

Query: 43  MQNIKQVHSQIIKTGLHNT----QFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIW 98
           M  + Q+ +Q+I + + ++         KLI  CA     ++  A L+F  +  PN    
Sbjct: 1   MAQVLQIQAQLITSPIPSSVVDPNLIAVKLIGACA--DHANVRQAALIFAHLASPNIFAH 58

Query: 99  NNIIRGHSLSSSPVVAIKFYVRMILSGFVPN--TYTFPFILKSCAKISAISEGKQIHAHV 156
           N  ++  + +S    AI+F+   + S   PN   +TF  +LK+CA ++ +  G++IHA V
Sbjct: 59  NATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAMV 118

Query: 157 LKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD--AVSYTALITGYASRGYLDD 214
            K G ES+ FV  SLI+MY + G L  AR +F++  +RD   V + A+I GYA      D
Sbjct: 119 TKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSD 178

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274
           A ++F  M  +    VPN+ T+V+VL ACAH+G+L+LG W+   I    +   L + NAL
Sbjct: 179 AIEVFRMMQ-QFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGLFLGNAL 237

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
            DMY+KCG + +AR +F  +E+RDVISW+++I G        EA   F +ML    +PND
Sbjct: 238 ADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPND 297

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           V F+ +L AC + G +  G      +DK +     V  +  ++D+ ++ G +  AE +  
Sbjct: 298 VVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMIS 357

Query: 395 GMGYK-TLASWNAMISGLAMH 414
            M  K  +  W A++ G  ++
Sbjct: 358 SMPMKPNVIIWGALLGGCRIY 378



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 154/300 (51%), Gaps = 10/300 (3%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ++L  C  + ++   +++H+ + K G  +  F  + LI++   + +  L+  L     +R
Sbjct: 97  SVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVR 156

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI--LSGFVPNTYTFPFILKSCAKISAISEG 149
           + N V WN +I G++ +     AI+ + RM+    G VPN  T   +L +CA + A+  G
Sbjct: 157 DRNVVCWNAMIAGYAQNEKYSDAIEVF-RMMQQFGGVVPNDVTLVSVLPACAHLGALDLG 215

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           K I   + +  +    F+  +L +MYA+ G +  AR VFNK   RD +S++ +I G A  
Sbjct: 216 KWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMY 275

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNL 268
           G+ D+A   F EM    E   PN+   + +L+AC H G ++ G N   ++ + +G+   +
Sbjct: 276 GHADEAFGCFYEMLDCGEK--PNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKV 333

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
                ++D+ S+ G+L KA D+  S+  K +VI W  ++GG     D      + + +L+
Sbjct: 334 EHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILE 393


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 244/603 (40%), Positives = 373/603 (61%), Gaps = 5/603 (0%)

Query: 105 HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESD 164
           HS   SP  A++ + R +     P++ TF   L +CA++  +  G+ +       G + D
Sbjct: 84  HSRRGSPASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 165 PFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPI 224
            FV +SL+++YA+ G +  A  VF +   RD V+++ ++ G+ S G   DA Q++  M  
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRM-- 200

Query: 225 REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
           RE+    +E  ++ V+ AC    ++ +G  V   +  HG+  ++    +L+DMY+K G L
Sbjct: 201 REDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLL 260

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
             A  +F  +  R+ +SW+ MI G+       EAL LFR M  S I+P+    +S L AC
Sbjct: 261 DVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLAC 320

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
           + +G L LG+ +H +I +      N  L T+ IDMY+KCG++ +A+ +F+ +  + L  W
Sbjct: 321 SNIGFLKLGRSVHGFIVRRFD--FNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILW 378

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
           NAMI+    HG+   AL+LF  M   G++PD  TF  +LSA +H+GL++ G+ +F  M+ 
Sbjct: 379 NAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVN 438

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGE 524
            +KI+P  +HY C+VDLL R+GL +EA  LL +M+ +P  AIW +LL  C  + +LELGE
Sbjct: 439 HFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGE 498

Query: 525 SVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVV 584
           S+A ++LEL+P++ G   L+SN+YA   +WD V  +R  + D G KK+PGCSSIE+    
Sbjct: 499 SIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTR 558

Query: 585 HEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLA 644
           H F++ D+ HPQ + I   + ++D  + K G++P T  V +D++EE KE  LS+HSE+LA
Sbjct: 559 HVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLA 618

Query: 645 IAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCN 704
           IA+GL++T PGT + I+KNLRVCG+CH A K ISKI +REI+ RD  RFHHFKDG CSC 
Sbjct: 619 IAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCR 678

Query: 705 DYW 707
           DYW
Sbjct: 679 DYW 681


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 278/767 (36%), Positives = 431/767 (56%), Gaps = 105/767 (13%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           +AL SK +N++ ++Q H  ++   LH+  + +S L+  C        +Y   +F +   P
Sbjct: 5   VALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCT-RLHAHPAYVDSIFTSSPSP 63

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           +  +++ +++ +S   +    +  +         P  + + +++K   K      G   H
Sbjct: 64  DASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGK-----SGNLFH 118

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESAR---------------------------- 185
           A+VLKLG   D F+  ++++MYA+NG+++ AR                            
Sbjct: 119 AYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNET 178

Query: 186 ---LVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR----------------- 225
              ++FN    R+ +++T+++TGYA  G L+ AR+ FDEMP R                 
Sbjct: 179 EAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKEC 238

Query: 226 ------------EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
                       EE   P+++T V  +S+C+ +G   L + +  +I+   +  N  V  A
Sbjct: 239 PKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTA 298

Query: 274 LIDM--------------------------------YSKCGDLVKARDLFESIEKRDVIS 301
           L+DM                                Y++ G L  AR+LF+++ KRDV+S
Sbjct: 299 LLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVS 358

Query: 302 WNVMIGGYTHTSDYKEALMLFRQMLQS-NIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           WN MI GY    +   ++ LF++M+   +I+P++VT  SVL AC ++GAL L  W+   +
Sbjct: 359 WNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIV 418

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
            + + KL  +S + SLI MY+KCG++  A ++F  MG + + S+N +ISG A +G   +A
Sbjct: 419 REKNIKLG-ISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEA 477

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
           + L   M  EG++PD +T++GVL+AC+HAGLL+ G+  F + IQ    +P + HY CMVD
Sbjct: 478 IKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKS-IQ----APTVDHYACMVD 532

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540
           LLGRAG  DEA+ L+++M MKP A ++ SLL A R+H R+ LGE  A  L ELEP+N G 
Sbjct: 533 LLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGN 592

Query: 541 YVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHI 600
           YVLLSN+YA  GRW+DV  +R  +   G+KK  G S +E    VH+F VGD+ H QSK I
Sbjct: 593 YVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDI 652

Query: 601 YEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRI 660
           Y++L E++  +++ GFV D S  L D++EE KE  L  HSEKLAI + L+ ++ GTTIR+
Sbjct: 653 YKLLAELERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRV 712

Query: 661 VKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           VKNLR+C +CH+A K+ISK+  REI+ RD NRFH F +G CSC+DYW
Sbjct: 713 VKNLRICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 260/620 (41%), Positives = 381/620 (61%), Gaps = 48/620 (7%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDP--FVHTSLINMYAQNGELESARLVFNK 190
           + F+L+SCA+ S++  G+++HA ++  G+   P  F+H +L+  YA  G    AR VF++
Sbjct: 16  YRFLLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDE 75

Query: 191 --SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS 248
              S +D V +T L+  +      D+A  +F EM  R     P+E T+V +   CA +G 
Sbjct: 76  IPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEM--RRCGVKPDEVTLVCLFGGCARLGD 133

Query: 249 LELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV---- 304
           + +G      +   GLG      NA++DMY+K G + +AR +F  ++ + V+SW V    
Sbjct: 134 VVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDG 193

Query: 305 ---------------------------MIGGYTHTSDYKEALMLFRQML-QSNIEPNDVT 336
                                      MI GY  +   +E+  L R+M+    +E N VT
Sbjct: 194 VIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVT 253

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
             S+L AC+  G L +G+W+HAY  K  +K  N+ + T+++DMYAKCG I  A + F  M
Sbjct: 254 LCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKM 313

Query: 397 GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR 456
             + + SWNAM+SGLAMHG    AL +F +M  E  +PDD+TF  VLSAC+H+GL+D G 
Sbjct: 314 PQRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEA-KPDDVTFTSVLSACSHSGLVDQGC 372

Query: 457 QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRV 516
            YF  +   Y I+PK++HY CMVDLLGRAG  +EAE L++ M ++P+  +  SLLG+C +
Sbjct: 373 FYFGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSI 432

Query: 517 HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCS 576
           HG+L+LGE + + L++L+P+N   ++LLSNMYA AG+ +   ++R  L  +G+KKVPG S
Sbjct: 433 HGKLQLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMS 492

Query: 577 SIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTS-------EVLYD--M 627
           SI VG  VH+F  GDK HP+++ +Y MLDE+   L  +G+ P+T+       + L D  +
Sbjct: 493 SIHVGGQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDDLV 552

Query: 628 DEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIA 687
           ++E KE AL  HSEKLAI +GLIST PG  + I KNLR+C +CHSA K++SKI+NREI+ 
Sbjct: 553 EQEEKEQALFSHSEKLAICFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKIYNREIVI 612

Query: 688 RDRNRFHHFKDGNCSCNDYW 707
           RDRNRFH FK+G+CSC DYW
Sbjct: 613 RDRNRFHCFKEGSCSCCDYW 632


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 258/660 (39%), Positives = 395/660 (59%), Gaps = 7/660 (1%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           +H+  I  G+ +  F  S ++++     F     A  VF+ + E + V+WN +I G S +
Sbjct: 135 LHAHSIVDGVASNLFVGSAIVDL--YFKFTRAELARKVFDVMPERDTVLWNTMISGFSRN 192

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVH 168
           S    +I+ +V M+  G   ++ T   +L + A++     G  I     K GL SD +V 
Sbjct: 193 SYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVL 252

Query: 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
           T LI++Y++ G+    R++F++    D +SY A+I+GY      + A  LF E+    + 
Sbjct: 253 TGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQR 312

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288
              N ST+V ++        L+L   + +L    G+     V+ AL  +Y +  ++  AR
Sbjct: 313 V--NSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFAR 370

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
            LF+   ++ + SWN MI GYT       A+ LF++M+   + PN VT  S+L ACA LG
Sbjct: 371 QLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM-PQLSPNPVTVTSILSACAQLG 429

Query: 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI 408
           AL +GKW+H  I K+ +  +NV + T+L+DMYAKCG+I  A Q+FD M  K + +WNAMI
Sbjct: 430 ALSIGKWVHGLI-KSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMI 488

Query: 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
           +G  +HG   +AL LF  M+  G+ P  +TF+ +L AC+H+GL+  G + F++M  +Y  
Sbjct: 489 TGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGF 548

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
            P  +HY CMVD+LGRAG    A   ++ M ++P  A+W +LLGAC +H   E+    +K
Sbjct: 549 QPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASK 608

Query: 529 HLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFL 588
            L +L+PEN G YVLLSN+Y+    +   A++R  +  + + K PGC+ IE+    + F 
Sbjct: 609 RLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFT 668

Query: 589 VGDKVHPQSKHIYEMLDEIDALLEKSGFVPDT-SEVLYDMDEEWKEGALSHHSEKLAIAY 647
            GD+ HPQ+  I+EML+++   + ++G+  +T +  L+D+++E KE  ++ HSEKLAIA+
Sbjct: 669 SGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAF 728

Query: 648 GLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           GLISTKPGT IRI+KNLRVC +CH+ATK ISKI  R I+ RD NRFHHFK+G CSC DYW
Sbjct: 729 GLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 153/519 (29%), Positives = 268/519 (51%), Gaps = 14/519 (2%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L LL+  T +  + Q+ +Q+I  G+H    +++KL         G +++   +F  + +P
Sbjct: 18  LTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTH--KFFDLGAVAHVRQLFNKVSKP 75

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRM-ILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
           +  ++N +IRG S +  P  +I  Y  +   +   P+ +T+ F + + +++     G  +
Sbjct: 76  DLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLL 135

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           HAH +  G+ S+ FV ++++++Y +    E AR VF+    RD V +  +I+G++   Y 
Sbjct: 136 HAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYF 195

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           +D+ ++F +M     +F  + +T+ TVL+A A +    LG  +  L    GL S+++V  
Sbjct: 196 EDSIRVFVDMLDVGLSF--DSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLT 253

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            LI +YSKCG   K R LF+ I++ D+IS+N MI GYT   + + A+ LFR++L S    
Sbjct: 254 GLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRV 313

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N  T + ++P       L L + I     K    L   S+ T+L  +Y +   ++ A Q+
Sbjct: 314 NSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQP-SVSTALTTVYCRLNEVQFARQL 372

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           FD    K+LASWNAMISG   +G  D+A+SLF  M+ + L P+ +T   +LSAC   G L
Sbjct: 373 FDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGAL 431

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
            IG+ + + +I+  ++   +     +VD+  + G   EA  L   M +  +   W +++ 
Sbjct: 432 SIGK-WVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWNAMIT 489

Query: 513 ACRVHGRLELGESVAKHLLELEPEN--PGAYVLLSNMYA 549
              +HG    G+   K   E+      P     LS +YA
Sbjct: 490 GYGLHGH---GKEALKLFYEMLQSGIPPTGVTFLSILYA 525


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 258/660 (39%), Positives = 395/660 (59%), Gaps = 7/660 (1%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           +H+  I  G+ +  F  S ++++     F     A  VF+ + E + V+WN +I G S +
Sbjct: 135 LHAHSIVDGVASNLFVGSAIVDL--YFKFTRAELARKVFDVMPERDTVLWNTMISGFSRN 192

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVH 168
           S    +I+ +V M+  G   ++ T   +L + A++     G  I     K GL SD +V 
Sbjct: 193 SYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVL 252

Query: 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
           T LI++Y++ G+    R++F++    D +SY A+I+GY      + A  LF E+    + 
Sbjct: 253 TGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQR 312

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288
              N ST+V ++        L+L   + +L    G+     V+ AL  +Y +  ++  AR
Sbjct: 313 V--NSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFAR 370

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
            LF+   ++ + SWN MI GYT       A+ LF++M+   + PN VT  S+L ACA LG
Sbjct: 371 QLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM-PQLSPNPVTVTSILSACAQLG 429

Query: 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI 408
           AL +GKW+H  I K+ +  +NV + T+L+DMYAKCG+I  A Q+FD M  K + +WNAMI
Sbjct: 430 ALSIGKWVHGLI-KSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMI 488

Query: 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
           +G  +HG   +AL LF  M+  G+ P  +TF+ +L AC+H+GL+  G + F++M  +Y  
Sbjct: 489 TGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGF 548

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
            P  +HY CMVD+LGRAG    A   ++ M ++P  A+W +LLGAC +H   E+    +K
Sbjct: 549 QPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASK 608

Query: 529 HLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFL 588
            L +L+PEN G YVLLSN+Y+    +   A++R  +  + + K PGC+ IE+    + F 
Sbjct: 609 RLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFT 668

Query: 589 VGDKVHPQSKHIYEMLDEIDALLEKSGFVPDT-SEVLYDMDEEWKEGALSHHSEKLAIAY 647
            GD+ HPQ+  I+EML+++   + ++G+  +T +  L+D+++E KE  ++ HSEKLAIA+
Sbjct: 669 SGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAF 728

Query: 648 GLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           GLISTKPGT IRI+KNLRVC +CH+ATK ISKI  R I+ RD NRFHHFK+G CSC DYW
Sbjct: 729 GLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  237 bits (605), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 153/519 (29%), Positives = 268/519 (51%), Gaps = 14/519 (2%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L LL+  T +  + Q+ +Q+I  G+H    +++KL         G +++   +F  + +P
Sbjct: 18  LTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTH--KFFDLGAVAHVRQLFNKVSKP 75

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRM-ILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
           +  ++N +IRG S +  P  +I  Y  +   +   P+ +T+ F + + +++     G  +
Sbjct: 76  DLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLL 135

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           HAH +  G+ S+ FV ++++++Y +    E AR VF+    RD V +  +I+G++   Y 
Sbjct: 136 HAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYF 195

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           +D+ ++F +M     +F  + +T+ TVL+A A +    LG  +  L    GL S+++V  
Sbjct: 196 EDSIRVFVDMLDVGLSF--DSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLT 253

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            LI +YSKCG   K R LF+ I++ D+IS+N MI GYT   + + A+ LFR++L S    
Sbjct: 254 GLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRV 313

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N  T + ++P       L L + I     K    L   S+ T+L  +Y +   ++ A Q+
Sbjct: 314 NSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQP-SVSTALTTVYCRLNEVQFARQL 372

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           FD    K+LASWNAMISG   +G  D+A+SLF  M+ + L P+ +T   +LSAC   G L
Sbjct: 373 FDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGAL 431

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
            IG+ + + +I+  ++   +     +VD+  + G   EA  L   M +  +   W +++ 
Sbjct: 432 SIGK-WVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWNAMIT 489

Query: 513 ACRVHGRLELGESVAKHLLELEPEN--PGAYVLLSNMYA 549
              +HG    G+   K   E+      P     LS +YA
Sbjct: 490 GYGLHGH---GKEALKLFYEMLQSGIPPTGVTFLSILYA 525


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 260/677 (38%), Positives = 392/677 (57%), Gaps = 9/677 (1%)

Query: 36  LLSKCTNM--QN-IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LL  C +   QN + QVH+  +K G     F     + + +      L  A ++FE I E
Sbjct: 153 LLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPE 212

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V +N +I G+        +I  +++M  SG  P+ +TF  +LK+   +   + G+Q+
Sbjct: 213 KDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQL 272

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           HA  +  G   D  V   +++ Y+++  +   R++F++    D VSY  +I+ Y+     
Sbjct: 273 HALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQY 332

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV-CSLIEGHGLGSNLHVT 271
           + +   F EM      F        T+LS  A++ SL++G  + C  +      S LHV 
Sbjct: 333 EASLHFFREMQCM--GFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATA-DSILHVG 389

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N+L+DMY+KC    +A  +F+S+ +R  +SW  +I GY     +   L LF +M  SN+ 
Sbjct: 390 NSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLR 449

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
            +  TF +VL A A   +L LGK +HA+I ++   L NV   + L+DMYAKCG+IK A Q
Sbjct: 450 ADQSTFATVLKASASFASLLLGKQLHAFIIRS-GNLENVFSGSGLVDMYAKCGSIKDAVQ 508

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VF+ M  +   SWNA+IS  A +G  + A+  F++MI  GLQPD ++ +GVL+AC+H G 
Sbjct: 509 VFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGF 568

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           ++ G +YF AM   Y I+PK +HY CM+DLLGR G F EAE L+  M  +PD  +W+S+L
Sbjct: 569 VEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVL 628

Query: 512 GACRVHGRLELGESVAKHLLELEP-ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
            ACR+H    L E  A+ L  +E   +  AYV +SN+YA AG W+ V  ++  + ++G+K
Sbjct: 629 NACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIK 688

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           KVP  S +EV   +H F   D+ HP    I   ++E+ A +E+ G+ PDTS V+ D+DE+
Sbjct: 689 KVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQ 748

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            K  +L +HSE+LA+A+ LIST  G  I ++KNLR C +CH+A KLISKI  REI  RD 
Sbjct: 749 MKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDT 808

Query: 691 NRFHHFKDGNCSCNDYW 707
           +RFHHF +G CSC DYW
Sbjct: 809 SRFHHFSEGVCSCGDYW 825



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 132/470 (28%), Positives = 229/470 (48%), Gaps = 19/470 (4%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG--FVPNTYTFPF 135
           GD+S A  +F+ + +   V W  ++  ++ +S    A K + +M  S    +P+  TF  
Sbjct: 93  GDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTT 152

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTS--LINMYAQNGELESARLVFNKSSL 193
           +L  C      +   Q+HA  +KLG +++PF+  S  L+  Y +   L+ A ++F +   
Sbjct: 153 LLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPE 212

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
           +D+V++  LITGY   G   ++  LF  + +R+    P++ T   VL A   +    LG 
Sbjct: 213 KDSVTFNTLITGYEKDGLYTESIHLF--LKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQ 270

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTS 313
            + +L    G   +  V N ++D YSK   +++ R LF+ + + D +S+NV+I  Y+   
Sbjct: 271 QLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQAD 330

Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH--AYIDKNHQKLNNVS 371
            Y+ +L  FR+M     +  +  F ++L   A L +L +G+ +H  A +      L+   
Sbjct: 331 QYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILH--- 387

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
           +  SL+DMYAKC   + AE +F  +  +T  SW A+ISG    G     L LF++M G  
Sbjct: 388 VGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSN 447

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
           L+ D  TF  VL A      L +G+Q    +I+   +       G +VD+  + G   +A
Sbjct: 448 LRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSG-LVDMYAKCGSIKDA 506

Query: 492 EALLKTMEMKPD--AAIWTSLLGACRVHGRLELGESVAKHLLE--LEPEN 537
              ++  E  PD  A  W +L+ A   +G  E        ++E  L+P++
Sbjct: 507 ---VQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDS 553



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 188/396 (47%), Gaps = 13/396 (3%)

Query: 120 RMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNG 179
           R+I +GF  +T    FI++   +   +S  ++++  +      S      ++I+ + + G
Sbjct: 38  RIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVST----NTMISGHVKTG 93

Query: 180 ELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTV 239
           ++ SAR +F+    R  V++T L+  YA   + D+A +LF +M       +P+  T  T+
Sbjct: 94  DVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTL 153

Query: 240 LSACAHMGSLELGNWVCSLIEGHGLGSN--LHVTNALIDMYSKCGDLVKARDLFESIEKR 297
           L  C           V +     G  +N  L V+N L+  Y +   L  A  LFE I ++
Sbjct: 154 LPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEK 213

Query: 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357
           D +++N +I GY     Y E++ LF +M QS  +P+D TF  VL A   L    LG+ +H
Sbjct: 214 DSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLH 273

Query: 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA 417
           A +        + S+   ++D Y+K   +     +FD M      S+N +IS  +   + 
Sbjct: 274 A-LSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQY 332

Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ-YFNAMIQDYKISPKLQHYG 476
           + +L  F  M   G    +  F  +LS   +   L +GRQ +  A++     +  + H G
Sbjct: 333 EASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALL---ATADSILHVG 389

Query: 477 -CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
             +VD+  +  +F+EAE + K++  +   + WT+L+
Sbjct: 390 NSLVDMYAKCEMFEEAELIFKSLPQRTTVS-WTALI 424


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 261/696 (37%), Positives = 416/696 (59%), Gaps = 39/696 (5%)

Query: 47   KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
            +++H  +++  L++     S L+++   S  G +  A  VF ++ E N+V +N ++ G+ 
Sbjct: 397  RELHGHLVRNLLNSDIILGSALVDM--YSKCGMVEEAHQVFRSLLERNEVSYNALLAGYV 454

Query: 107  LSSSPVVAIKFYVRMILS-GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
                   A++ Y  M    G  P+ +TF  +L  CA     ++G+QIHAH+++  +  + 
Sbjct: 455  QEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNI 514

Query: 166  FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
             V T L++MY++ G L  A+ +FN+ + R+A S+ ++I GY   G   +A +LF +M + 
Sbjct: 515  IVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQL- 573

Query: 226  EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG--- 282
                 P+  ++ ++LS+C  +   + G  + + I  + +     +   L+DMY+KCG   
Sbjct: 574  -NGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMD 632

Query: 283  ------------DLV----------------KARDLFESIEKRDVISWNVMIGGYTHTSD 314
                        D++                 A++LF+ +E+R+   WN ++ GY +   
Sbjct: 633  YAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGL 692

Query: 315  YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
             KE+   F +ML+S+IE + +T ++++  C+ L AL+ G  +H+ I K      +V L T
Sbjct: 693  KKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLET 752

Query: 375  SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
            +L+DMY+KCG I  A  VFD M  K + SWNAMISG + HG + +AL L+  M  +G+ P
Sbjct: 753  ALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYP 812

Query: 435  DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494
            +++TF+ +LSAC+H GL++ G + F +M +DY I  K +HY CMVDLLGRAG  ++A+  
Sbjct: 813  NEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEF 872

Query: 495  LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554
            ++ M ++P+ + W +LLGACRVH  +++G   A+ L EL+P+NPG YV++SN+YA AGRW
Sbjct: 873  VEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRW 932

Query: 555  DDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKS 614
             +V  IR  +  KG+KK PG S IE+ S +  F  G K HP+++ IY  L  +    +  
Sbjct: 933  KEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGL 992

Query: 615  GFVPDTSEVLY---DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCH 671
            G++PDTS +L    D+ EE +E  L  HSE+LA++ GLIS    +TIR+ KNLR+CG+CH
Sbjct: 993  GYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCH 1052

Query: 672  SATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            +ATK ISKI  R IIARD NRFHHF++G CSC DYW
Sbjct: 1053 TATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 1088



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 169/647 (26%), Positives = 308/647 (47%), Gaps = 66/647 (10%)

Query: 12  PSILHFPPSSDPPYKLLQNQPSLALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKL 68
           P+ +H  P+SD     +   P  +L+  C +    Q  K +H+Q+I  G +   + ++K+
Sbjct: 58  PTSIHTKPASD-----VNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKI 112

Query: 69  IEICAVSP-FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV 127
           + + A S    DL YA  +FE + E N   WN +I  ++     +  ++ Y RM  SG  
Sbjct: 113 LMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNF 172

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
            + +TFP ++K+C  +  +   +Q+ + V+K GL  + FV  +L++ YA+ G ++ A   
Sbjct: 173 SDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTS 232

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
            ++      V++ A+I GY      ++A  +FD M   +    P+  T  + L  C  + 
Sbjct: 233 LDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRM--LKIGVCPDNFTFASALRVCGALR 290

Query: 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG 307
           S + G  V S +   G   +  V NALIDMY+KC D      +F+ + +R+ ++WN +I 
Sbjct: 291 SRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIIS 350

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
                  + +AL+LF +M +S  + N     S+L A A L  +  G+ +H ++ +N    
Sbjct: 351 AEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLN- 409

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
           +++ L ++L+DMY+KCG ++ A QVF  +  +   S+NA+++G    GKA++AL L+  M
Sbjct: 410 SDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDM 469

Query: 428 IGE-GLQPDDITFVGVLSAC-----------------------------------NHAGL 451
             E G+QPD  TF  +L+ C                                   +  G 
Sbjct: 470 QSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGR 529

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEM---KPDAAIWT 508
           L+  ++ FN M +    S     +  M++   + G   EA  L K M++   KPD    +
Sbjct: 530 LNYAKEIFNRMAERNAYS-----WNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLS 584

Query: 509 SLLGACRVHGRLELGESVAKHLLELEPENPGAY-VLLSNMYAGAGRWDDVATIRTRLNDK 567
           S+L +C      + G  +   ++    E  G   V+L +MYA  G  D       ++ D+
Sbjct: 585 SMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMD----YAWKVYDQ 640

Query: 568 GMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKS 614
            +KK    +++ V + V+     D     +K++++ +++ +  L  S
Sbjct: 641 TIKKDVILNNVMVSAFVNSGRAND-----AKNLFDQMEQRNTALWNS 682



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 146/524 (27%), Positives = 261/524 (49%), Gaps = 42/524 (8%)

Query: 42  NMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNI 101
           +M  ++Q+ S ++K GL+   F    L++    + FG +  A+   + I   + V WN +
Sbjct: 190 DMGGVRQLQSSVVKAGLNCNLFVGGALVD--GYARFGWMDDAVTSLDEIEGTSVVTWNAV 247

Query: 102 IRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGL 161
           I G+    S   A   + RM+  G  P+ +TF   L+ C  + +   GKQ+H+ ++  G 
Sbjct: 248 IAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGF 307

Query: 162 ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDE 221
           + D FV  +LI+MYA+  + ES   VF++   R+ V++ ++I+  A  G+ +DA  LF  
Sbjct: 308 KGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLF-- 365

Query: 222 MPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC 281
           + ++E  +  N   + ++L A A +  +  G  +   +  + L S++ + +AL+DMYSKC
Sbjct: 366 LRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKC 425

Query: 282 GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSV 340
           G + +A  +F S+ +R+ +S+N ++ GY      +EAL L+  M  +  I+P+  TF ++
Sbjct: 426 GMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTL 485

Query: 341 LPACAYLGALDLGKWIHAY-IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK 399
           L  CA     + G+ IHA+ I  N  K  N+ + T L+ MY++CG +  A+++F+ M  +
Sbjct: 486 LTLCANQRNDNQGRQIHAHLIRANITK--NIIVETELVHMYSECGRLNYAKEIFNRMAER 543

Query: 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF 459
              SWN+MI G   +G+  +AL LF +M   G++PD  +   +LS+C        GR+  
Sbjct: 544 NAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELH 603

Query: 460 NAMIQ------------------------------DYKISPKLQHYGCMVDLLGRAGLFD 489
           N +++                              D  I   +     MV     +G  +
Sbjct: 604 NFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRAN 663

Query: 490 EAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL 533
           +A+ L   ME + + A+W S+L      G   L +    H LE+
Sbjct: 664 DAKNLFDQMEQR-NTALWNSILAGYANKG---LKKESFNHFLEM 703



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 9/210 (4%)

Query: 21  SDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDL 80
           SD  Y +L     + L S    +++  Q+HS IIK G  N    L   + +   S  G +
Sbjct: 706 SDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETAL-VDMYSKCGAI 764

Query: 81  SYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSC 140
           + A  VF+ +   N V WN +I G+S       A+  Y  M   G  PN  TF  IL +C
Sbjct: 765 TKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSAC 824

Query: 141 AKISAISEGKQIHAHVLK-LGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSY 199
           +    + EG +I   + +   +E+    +T ++++  + G LE A+    K  +   VS 
Sbjct: 825 SHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVST 884

Query: 200 TALITGYASRGYLD------DARQLFDEMP 223
              + G A R + D       A++LF+  P
Sbjct: 885 WGALLG-ACRVHKDMDMGRLAAQRLFELDP 913


>gi|302763721|ref|XP_002965282.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
 gi|300167515|gb|EFJ34120.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
          Length = 721

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 263/696 (37%), Positives = 406/696 (58%), Gaps = 20/696 (2%)

Query: 22  DPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLS 81
           D   + +Q+    A +  C +  ++  +H +I + GL ++ + L+ L+ +  ++  G L 
Sbjct: 36  DSLEREIQSDSFAAAIRSCKDSNSVSIIHQKITRAGLGSSAY-LNNLL-VLMLAKHGSLC 93

Query: 82  YALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCA 141
            A  +F+ I+  N   WN II  ++    P  A+  + +M +    P   TF   L +C+
Sbjct: 94  EARSIFDAIQHKNIFSWNIIISAYAHRGHPSTALHLFAKMDVP---PTAMTFATALSACS 150

Query: 142 KISAISEGKQIHAHV-LKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYT 200
            +  +  G++IHA +    G+     + T++ +MYA+ G+L +A+ VF++   ++ VS+ 
Sbjct: 151 SLGDLQRGREIHARIKASRGIRPSVILDTAIFSMYAKCGDLSTAKSVFDRIPAKNVVSWN 210

Query: 201 ALITGYASRGYLD-DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
           ALI  YA  G+    A  LF++M   E    P  +T V VL AC  + SLE    + + I
Sbjct: 211 ALIAAYAQSGHSHHQALDLFEKMA--EHGVRPCRATFVGVLGACNDVTSLE---KIHARI 265

Query: 260 EGHGLGSNLH---VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
              GL  ++    V NAL++MY+KCG L  ARD+F  +++RD +S NVMI  +      K
Sbjct: 266 VETGLQFDVRDVGVQNALLNMYAKCGSLEVARDIFRKMQRRDQVSMNVMIATFAQQGLGK 325

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK----NHQKLNNVSL 372
           E++ +FR+M    +  +D TF SV+ AC+  GAL+ GK IH  + +        L NV +
Sbjct: 326 ESIQVFREMDLEGLPQDDTTFASVITACSCCGALEFGKRIHKRVVEPVLGRKCCLPNVVV 385

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
            T+L+ MY KCG ++ A+ VF  M  K   SWNAM++  A  G+ D+A +       EG+
Sbjct: 386 ETALVSMYGKCGTLEQAKAVFKAMTTKNSVSWNAMLAACAHQGQGDEAAAFLRAAACEGV 445

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
           + D  +F+ VL AC+H+G+L++   +F  M+ D+ + P  ++Y CMVDLL R+G   +A+
Sbjct: 446 ELDSASFISVLIACSHSGMLEVAYDHFQLMLSDFDLVPAAENYRCMVDLLARSGRLGDAD 505

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552
            L+ +M   PDA  W +LLG CRV G LE   S A+    LEP+N   Y LLS++Y+  G
Sbjct: 506 ELMNSMPFSPDAIAWRTLLGGCRVQGSLENAASAAEQAFNLEPQNTAPYTLLSSLYSATG 565

Query: 553 RWDDVATIRTRLNDKGMKK-VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALL 611
           + D++  +R+ + ++G++K VPG S IEV   VHEF+ GD  HPQ   I   LD ++  L
Sbjct: 566 KKDELVELRSSMKERGLRKLVPGRSVIEVHGRVHEFVAGDSSHPQIDKILRELDILNVEL 625

Query: 612 EKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCH 671
           +++GFVP T  V++D+  E KE  L+ HSEKLA+A+GLISTK G  + ++KNLRVC +CH
Sbjct: 626 KQAGFVPSTDGVVHDLKTEDKEEILALHSEKLAVAFGLISTKSGIPLLVLKNLRVCSDCH 685

Query: 672 SATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            A KLISK+ +R I  RD NRFH F+ G CSC DYW
Sbjct: 686 GAIKLISKLRSRVITVRDANRFHRFQSGTCSCGDYW 721


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 266/676 (39%), Positives = 408/676 (60%), Gaps = 11/676 (1%)

Query: 37  LSKCTNMQNIKQVHSQIIKT----GLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           L  CT++ +  +V  +II+     G H   +  S ++    +   G L+ A  VF+ + E
Sbjct: 152 LKACTDLLD-DEVGMEIIRAAVRRGFHLHLYVGSSMVNF--LVKRGYLADAQKVFDGMPE 208

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V WN+II G+        +I+ ++ MI  G  P+  T   +LK+C +      G   
Sbjct: 209 KDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCA 268

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H++VL LG+ +D FV TSL++MY+  G+  SA LVF+    R  +S+ A+I+GY   G +
Sbjct: 269 HSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMI 328

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
            ++  LF  +      F  +  T+V+++  C+    LE G  + S I    L S+L ++ 
Sbjct: 329 PESYALFRRLVQSGSGF--DSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLST 386

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           A++DMYSKCG + +A  +F  + K++VI+W  M+ G +     ++AL LF QM +  +  
Sbjct: 387 AIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAA 446

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N VT +S++  CA+LG+L  G+ +HA+  ++    + V + ++LIDMYAKCG I +AE++
Sbjct: 447 NSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAV-ITSALIDMYAKCGKIHSAEKL 505

Query: 393 FDG-MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           F+     K +   N+MI G  MHG    AL ++SRMI E L+P+  TFV +L+AC+H+GL
Sbjct: 506 FNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGL 565

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           ++ G+  F++M +D+ + P+ +HY C+VDL  RAG  +EA+ L+K M  +P   +  +LL
Sbjct: 566 VEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEALL 625

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
             CR H    +G  +A  L+ L+  N G YV+LSN+YA A +W+ V  IR  +  +GMKK
Sbjct: 626 SGCRTHKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKK 685

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
           +PG S IEVG+ V+ F   D  HP    IY++L+ +   +E  G++PDTS VL D++E  
Sbjct: 686 IPGYSLIEVGNKVYTFFASDDSHPSWADIYQLLENLRLEVEAEGYIPDTSCVLRDVNEPM 745

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           K   L  HSE+LAIA+GL+ST  G+ I+I KNLRVC +CH+ TK ISKI  REII RD N
Sbjct: 746 KVKLLWGHSERLAIAFGLLSTPCGSLIKITKNLRVCVDCHNVTKYISKIVQREIIVRDAN 805

Query: 692 RFHHFKDGNCSCNDYW 707
           RFHHF +G CSCND+W
Sbjct: 806 RFHHFVNGKCSCNDFW 821



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 177/656 (26%), Positives = 297/656 (45%), Gaps = 56/656 (8%)

Query: 2   ALPPSSLTLSPSILHFPPSSDPP--YKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLH 59
           A P S+     S+ H P  +  P  +  L +Q S  L+       ++K +H+QIIK  + 
Sbjct: 27  AAPSSTFV---SVHHAPFFNQAPSVFSSLLHQFSNTLI-------HVKSIHAQIIKNWVS 76

Query: 60  NTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYV 119
              F  +KLI +   S  G L +A  VF+    P   + N +I G   +   +   + + 
Sbjct: 77  TESFLAAKLIRV--YSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFR 134

Query: 120 RMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNG 179
            M       N+YT  F LK+C  +     G +I    ++ G     +V +S++N   + G
Sbjct: 135 MMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRG 194

Query: 180 ELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTV 239
            L  A+ VF+    +D V + ++I GY  +G   ++ Q+F EM        P+  T+  +
Sbjct: 195 YLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMI--GGGLRPSPVTMANL 252

Query: 240 LSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV 299
           L AC   G  ++G    S +   G+G+++ V  +L+DMYS  GD   A  +F+S+  R +
Sbjct: 253 LKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSL 312

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
           ISWN MI GY       E+  LFR+++QS    +  T +S++  C+    L+ G+ +H+ 
Sbjct: 313 ISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSC 372

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADK 419
           I +   + +++ L T+++DMY+KCG IK A  VF  MG K + +W AM+ GL+ +G A+ 
Sbjct: 373 IIRKELE-SHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAED 431

Query: 420 ALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ-DYKISPKLQHYGCM 478
           AL LF +M  E +  + +T V ++  C H G L  GR      I+  Y     +     +
Sbjct: 432 ALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVIT--SAL 489

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
           +D+  + G    AE L        D  +  S++    +HG       V   ++E E   P
Sbjct: 490 IDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIE-ERLKP 548

Query: 539 GAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSK 598
                +S              + T  +  G+ +       E  ++ H       V PQ K
Sbjct: 549 NQTTFVS--------------LLTACSHSGLVE-------EGKALFHSMERDHDVRPQHK 587

Query: 599 HIYEMLD---------EIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAI 645
           H   ++D         E D L+++  F P T     D+ E    G  +H +  + I
Sbjct: 588 HYACLVDLHSRAGRLEEADELVKQMPFQPST-----DVLEALLSGCRTHKNTNMGI 638


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 261/606 (43%), Positives = 378/606 (62%), Gaps = 41/606 (6%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYA--QNGELESARLVFNKSSL 193
           +L+ C   S + E +QIH  +LK GL  D    + L+   A   +G L  AR VF++   
Sbjct: 24  LLQRC---SNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVP-NESTVVTVLSACAHMGSLELG 252
            +   +  +I GY++    ++A  L+  M       VP N  T   +L AC+ M +LE  
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHS---VPHNAYTFPFLLKACSSMSALEET 137

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
             + + I   G GS ++ TN+L+++YSK GD+  AR LF+ +++RD +SWN MI GYT  
Sbjct: 138 QQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKC 197

Query: 313 SDY-------------------------------KEALMLFRQMLQSNIEPNDVTFLSVL 341
            +                                KEAL LF +M  + I+ ++V  +S L
Sbjct: 198 GEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTL 257

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
            ACA LG LD GKWIHAYI K+  +++ + L   LIDMYAKCG+++ A +VF  M  K +
Sbjct: 258 QACADLGVLDQGKWIHAYIKKHEIEIDPI-LGCVLIDMYAKCGDLEEAIEVFRKMEEKGV 316

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
           + W AMISG A+HG+  +AL  F +M   G++P+ +TF G+L+AC+HAGL+   +  F +
Sbjct: 317 SVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFES 376

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
           M + +   P ++HYGCMVDLLGRAGL  EAE L++ M +KP+AAIW +LL AC +HG LE
Sbjct: 377 MERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLE 436

Query: 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
           LG+ + K L++++P + G Y+ L++++A AG W+  A +R ++ ++G+ K+PGCS I V 
Sbjct: 437 LGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVN 496

Query: 582 SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
              HEFL GD+ HPQ K I  ML++I   L + G+ P   ++L D++++ KE A+ HHSE
Sbjct: 497 GTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSE 556

Query: 642 KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
           KLA+ +GLISTKPG TIRIVKNLRVC +CH+  KLISK++ REI+ RDR RFH FKDGNC
Sbjct: 557 KLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNC 616

Query: 702 SCNDYW 707
           +C DYW
Sbjct: 617 TCGDYW 622



 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 142/415 (34%), Positives = 238/415 (57%), Gaps = 34/415 (8%)

Query: 33  SLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +L LL +C+NM+ ++Q+H Q++KTGL   +   SKL+  CA    G L+YA  VF+ I  
Sbjct: 21  TLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
           PN  +WN +IRG+S S  P  A+  Y  M+      N YTFPF+LK+C+ +SA+ E +QI
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQI 140

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           HAH++K+G  S+ +   SL+N+Y+++G+++SARL+F++   RD VS+ ++I GY   G +
Sbjct: 141 HAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEI 200

Query: 213 DDARQLFDEMPIREENFV--------------PNES-----------------TVVTVLS 241
           + A ++F+ MP  E N +              P E+                  +V+ L 
Sbjct: 201 EMAYEIFNHMP--ERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQ 258

Query: 242 ACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVIS 301
           ACA +G L+ G W+ + I+ H +  +  +   LIDMY+KCGDL +A ++F  +E++ V  
Sbjct: 259 ACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSV 318

Query: 302 WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361
           W  MI GY      +EAL  F +M  + +EPN +TF  +L AC++ G +   K +   ++
Sbjct: 319 WTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESME 378

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHG 415
           + H    ++  +  ++D+  + G +K AE++ + M  K  A+ W A+++   +HG
Sbjct: 379 RIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHG 433


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 259/596 (43%), Positives = 357/596 (59%), Gaps = 41/596 (6%)

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           K +HA +L+LGL+ D ++   ++      G    +  +F+++   +   +  +I G    
Sbjct: 27  KHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLN 86

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
               ++ +++  M  R+E   P+  T   +L ACA +   +LG  +  L+   G  S+  
Sbjct: 87  DSFQESIEIYHSM--RKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAF 144

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKR-------------------------------- 297
           V  +L+ +Y KCG +  A  +F+ I ++                                
Sbjct: 145 VNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVF 204

Query: 298 ------DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALD 351
                 D++SW+ MI GY      KEAL LF +ML     P+    + VL ACA LGAL+
Sbjct: 205 DGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALE 264

Query: 352 LGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGL 411
           LG W    +D+N + L N  L T+LIDMYAKCG + +A +VF GM  K +  WNA ISGL
Sbjct: 265 LGNWASNLMDRN-EFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGL 323

Query: 412 AMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK 471
           AM G    A  LF +M   G++PD  TFVG+L AC HAGL+D GRQYFN+M + + ++P+
Sbjct: 324 AMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPE 383

Query: 472 LQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLL 531
           ++HYGCMVDLLGRAG  DEA  L+K+M M+ +A +W +LLG CR+H   +L E V K L+
Sbjct: 384 IEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLI 443

Query: 532 ELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGD 591
            LEP N G YVLLSN+Y+ + +W+D A IR+ ++++G+KKVPG S IEV  VVHEFLVGD
Sbjct: 444 ALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLVGD 503

Query: 592 KVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLIS 651
             HP S+ IY  L E+   L+ SG+VP T  VL+D++EE KE  +  HSEKLAIA+GLIS
Sbjct: 504 TSHPLSEKIYAKLGELVKDLKASGYVPTTDYVLFDIEEEEKEHFIGCHSEKLAIAFGLIS 563

Query: 652 TKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           T P   IR+VKNLRVCG+CH A K IS+   REII RD NRFH F DG+CSC DYW
Sbjct: 564 TAPNDKIRVVKNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFNDGSCSCKDYW 619



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 130/442 (29%), Positives = 229/442 (51%), Gaps = 45/442 (10%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           + L     +++++K VH+ +++ GL    + L+K++       FG+ +Y+  +F   +EP
Sbjct: 14  IRLFQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSF--NFGNTNYSHRIFHQTKEP 71

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           N  ++N +I G  L+ S   +I+ Y  M   G  P+++TFPF+LK+CA++     G ++H
Sbjct: 72  NIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLH 131

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN-----------------------K 190
             V+K G ESD FV+TSL+++Y + G +++A  VF+                       +
Sbjct: 132 GLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCR 191

Query: 191 SSL---------------RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNEST 235
            ++               +D VS++++I GYAS G   +A  LF +M    E F P+   
Sbjct: 192 EAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKM--LNEGFRPDCYA 249

Query: 236 VVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE 295
           +V VL ACA +G+LELGNW  +L++ +    N  +  ALIDMY+KCG +  A ++F  + 
Sbjct: 250 MVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMR 309

Query: 296 KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKW 355
           K+D++ WN  I G   +   K A  LF QM +S IEP+  TF+ +L AC + G +D G+ 
Sbjct: 310 KKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQ 369

Query: 356 IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA-SWNAMISGLAMH 414
               +++       +  +  ++D+  + G +  A Q+   M  +  A  W A++ G  +H
Sbjct: 370 YFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLH 429

Query: 415 GKADKALSLFSRMIGEGLQPDD 436
                   +  ++I   L+P +
Sbjct: 430 RDTQLVEGVLKQLI--ALEPSN 449



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 150/308 (48%), Gaps = 7/308 (2%)

Query: 30  NQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDL-SYALLVFE 88
           N   ++L  KC  + N  +V   I +  +      +S  I +       D+   A  VF+
Sbjct: 146 NTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFD 205

Query: 89  TIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE 148
            + E + V W+++I+G++ +  P  A+  + +M+  GF P+ Y    +L +CA++ A+  
Sbjct: 206 GMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALEL 265

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           G      + +     +P + T+LI+MYA+ G ++SA  VF     +D V + A I+G A 
Sbjct: 266 GNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAM 325

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSN 267
            G++  A  LF +M   +    P+ +T V +L AC H G ++ G  +  S+     L   
Sbjct: 326 SGHVKAAFGLFGQM--EKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPE 383

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQML 326
           +     ++D+  + G L +A  L +S+  + + I W  ++GG     D +    + +Q++
Sbjct: 384 IEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLI 443

Query: 327 QSNIEPND 334
              +EP++
Sbjct: 444 A--LEPSN 449


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 257/595 (43%), Positives = 368/595 (61%), Gaps = 25/595 (4%)

Query: 32  PSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICA------------VSPFGD 79
           P L LLS C +++ IKQ+H+ IIK     +   L  +I +C                  +
Sbjct: 28  PQLLLLSSCKSVREIKQIHASIIKANTTRSTTTLP-IISLCTKITSLLQQDVHLADSIQN 86

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAI-KFYVRMILSGFVPNTYTFPFILK 138
           L YA  +     +    I+N II+  S S++    I   Y +M+L G  P+TYT P++LK
Sbjct: 87  LWYASSLANFCHQNPVYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYTLPYLLK 146

Query: 139 SCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVS 198
           +C++  A  E  QIHAH +K GL S+ FV  +L+  YA +G +E+   VF++    D +S
Sbjct: 147 ACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPHWDLIS 206

Query: 199 YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           +T LI  Y+  GY  +A   F  M     N   +  T+V VLSAC+ +G   LG  + + 
Sbjct: 207 WTTLIQAYSKMGYPSEAIAAFFRM-----NCTADRMTLVVVLSACSQLGDFTLGKKILAY 261

Query: 259 IEGH--GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
           ++ H   + S++ + NAL+DMY KCG    AR LF  +  ++++SWN MI G  H   +K
Sbjct: 262 MDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFK 321

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           EAL +FR+M    ++P+ VT + VL +CA LG L+LGKW+H+YIDKNH K +   +  +L
Sbjct: 322 EALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGY-VANAL 380

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           +DMYAKCG+I  A  VF  M  K + S+ AMI G AMHGKAD+AL++FS M   G++PD 
Sbjct: 381 VDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDH 440

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
           +T VGVLSAC+HAGLL+ GR++F  M + Y + P+ +HYGCMVDLLGRAGL  EAEA   
Sbjct: 441 VTLVGVLSACSHAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAFTN 500

Query: 497 TMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
            M + PDA++W SLLGAC++H ++ELGE+V + L+E+EPE  GAY+L+SN+Y+ A RW D
Sbjct: 501 KMPIVPDASVWGSLLGACKIHAKVELGETVIQKLIEMEPERDGAYILMSNIYSSANRWRD 560

Query: 557 VATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYE---MLDEID 608
               R  +    +KK PGCSSIEV  +VHEF  G+K HP+S+ +     ++ E+D
Sbjct: 561 ALKWRKAMKQNNIKKTPGCSSIEVDGMVHEFRKGEKSHPKSREMISNSNIIKEVD 615


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 253/595 (42%), Positives = 367/595 (61%), Gaps = 40/595 (6%)

Query: 148 EGKQIHAHVLKLG--LESDPFVHTSLINMYAQNGELESARLVFN--KSSLRDAVSYTALI 203
           E +Q+HA ++K    L   P     L+  +  +     A+ +F   +    +   + + +
Sbjct: 43  ELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPS--FHYAQQIFKCVEKQKPETFVWNSCL 100

Query: 204 TGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG 263
              A      DA  LF  +  R+ +  P+  T  +VL AC ++  L  G  +  ++E  G
Sbjct: 101 KALAEGDSPIDAIMLFYRL--RQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVG 158

Query: 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG---------------- 307
             SNL++ N ++ +Y+ CG++ +AR LFE + +RDV++WN+MI                 
Sbjct: 159 FRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFS 218

Query: 308 ---------------GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL 352
                          GY      KEA+ LF +M ++ ++ N+VT ++VL ACA LGALDL
Sbjct: 219 RMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDL 278

Query: 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLA 412
           G  IH Y ++ H    NV +  +LIDMY KCG ++ A +VF+ M  +T+ SW+AMI GLA
Sbjct: 279 GMRIHEYSNR-HGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLA 337

Query: 413 MHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL 472
           MHG+A++AL LFS M   G++P+ +TF+G+L AC+H GL+  GR++F +M +DY I P++
Sbjct: 338 MHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQI 397

Query: 473 QHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
           +HYGCMVDLL RAGL  EA   +  M MKP+  +W +LLGACRVH  +E+ E   KHLLE
Sbjct: 398 EHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLE 457

Query: 533 LEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDK 592
           L+P N G YV+LSN+YA AGRW+D A +R  + D+ +KK PG SSI V  VVHEF+ G++
Sbjct: 458 LDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEE 517

Query: 593 VHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLIST 652
            HP ++ I++  +E+   +   G+VP+TS VL D++E  K   +S HSEKLA+ +GL++T
Sbjct: 518 SHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNT 577

Query: 653 KPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
              T IRI+KNLR+C +CHSA KLIS I NREI+ RDRNRFH F D +CSC DYW
Sbjct: 578 PAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 632



 Score =  219 bits (557), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 131/443 (29%), Positives = 222/443 (50%), Gaps = 41/443 (9%)

Query: 17  FPPSSDPPYKLLQN-QPSLALLSKCTNMQN------IKQVHSQIIKTGLHNTQFALSKLI 69
           FP    P    + N +P  +   K   ++N      ++QVH+QIIKT    +   L+++ 
Sbjct: 8   FPIPQSPNRNQIHNVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRVG 67

Query: 70  EICAVSPFGDLSYALLVFETI--REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV 127
            +CA +P     YA  +F+ +  ++P   +WN+ ++  +   SP+ AI  + R+      
Sbjct: 68  LVCAFTP--SFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVC 125

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P+T+T   +L++C  +  +S G+ +H  V K+G  S+ ++   ++++YA  GE+  ARL+
Sbjct: 126 PDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLL 185

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR---------------------- 225
           F K   RD V++  +I     +G  + A  LF  MP R                      
Sbjct: 186 FEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAI 245

Query: 226 -------EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMY 278
                  E     NE TVV VL+ACA +G+L+LG  +      HG   N+ ++N LIDMY
Sbjct: 246 HLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMY 305

Query: 279 SKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
            KCG L +A  +FE +E+R V+SW+ MIGG       +EAL LF  M Q  IEPN VTF+
Sbjct: 306 VKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFI 365

Query: 339 SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
            +L AC+++G +  G+   A + +++  +  +  +  ++D+ ++ G +  A +    M  
Sbjct: 366 GLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPM 425

Query: 399 K-TLASWNAMISGLAMHGKADKA 420
           K     W A++    +H   + A
Sbjct: 426 KPNGVVWGALLGACRVHKNVEMA 448


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 253/618 (40%), Positives = 378/618 (61%), Gaps = 6/618 (0%)

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           + N V W  +I G S +S    AI+ +  M + G VP  + F   +++CA + +I  GKQ
Sbjct: 3   QRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQ 62

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +H   LK G+ S+ FV ++L +MY++ G +  A  VF +   +D VS+TA+I GY+  G 
Sbjct: 63  MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGE 122

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
            ++A   F +M   +E    ++  + + L AC  + + + G  V S +   G  S++ V 
Sbjct: 123 FEEALLAFKKMI--DEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180

Query: 272 NALIDMYSKCGDLVKARDLFE-SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
           NAL DMYSK GD+  A ++F    E R+V+S+  +I GY  T   ++ L +F ++ +  I
Sbjct: 181 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGI 240

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDK-NHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           EPN+ TF S++ ACA   AL+ G  +HA + K N  +   VS  + L+DMY KCG ++ A
Sbjct: 241 EPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVS--SILVDMYGKCGLLEQA 298

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
            Q FD +G  T  +WN+++S    HG    A+ +F RM+  G++P+ ITF+ +L+ C+HA
Sbjct: 299 IQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHA 358

Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
           GL++ G  YF +M + Y + P  +HY C++DLLGRAG   EA+  +  M  +P+A  W S
Sbjct: 359 GLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCS 418

Query: 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
            LGACR+HG  E+G+  A+ L++LEP+N GA VLLSN+YA   +W+DV ++R R+ D  +
Sbjct: 419 FLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNV 478

Query: 570 KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE 629
           KK+PG S ++VG   H F   D  HP+   IYE LD +   ++ +G+VP T  V  DMD+
Sbjct: 479 KKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDD 538

Query: 630 EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
             KE  L  HSE++A+A+ LIS   G  I + KNLRVC +CHSA K ISK+  R+II RD
Sbjct: 539 SMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRD 598

Query: 690 RNRFHHFKDGNCSCNDYW 707
            +RFHHF DG+CSC DYW
Sbjct: 599 NSRFHHFTDGSCSCGDYW 616



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 199/387 (51%), Gaps = 9/387 (2%)

Query: 37  LSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           +  C ++ +I   KQ+H   +K G+ +  F  S L ++   S  G +  A  VFE +   
Sbjct: 48  IRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDM--YSKCGAMFDACKVFEEMPCK 105

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           ++V W  +I G+S       A+  + +MI      + +     L +C  + A   G+ +H
Sbjct: 106 DEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVH 165

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN-KSSLRDAVSYTALITGYASRGYL 212
           + V+KLG ESD FV  +L +MY++ G++ESA  VF   S  R+ VSYT LI GY     +
Sbjct: 166 SSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQI 225

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           +    +F E+  R +   PNE T  +++ ACA+  +LE G  + + +       +  V++
Sbjct: 226 EKGLSVFVEL--RRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSS 283

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            L+DMY KCG L +A   F+ I     I+WN ++  +      K+A+ +F +M+   ++P
Sbjct: 284 ILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKP 343

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N +TF+S+L  C++ G ++ G      +DK +  +     ++ +ID+  + G +K A++ 
Sbjct: 344 NAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEF 403

Query: 393 FDGMGYKTLA-SWNAMISGLAMHGKAD 418
            + M ++  A  W + +    +HG  +
Sbjct: 404 INRMPFEPNAFGWCSFLGACRIHGDKE 430



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 82/200 (41%), Gaps = 36/200 (18%)

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
           M  + L SW AMISGL+ + K  +A+  F  M   G  P    F   + AC   G +++G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 456 RQYF-------------------------NAMIQDYKISPKLQ-----HYGCMVDLLGRA 485
           +Q                            AM    K+  ++       +  M+D   + 
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 486 GLFDEAEALLKTM---EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV 542
           G F+EA    K M   E+  D  +  S LGAC      + G SV   +++L  E+   +V
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESD-IFV 179

Query: 543 --LLSNMYAGAGRWDDVATI 560
              L++MY+ AG  +  + +
Sbjct: 180 GNALTDMYSKAGDMESASNV 199


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 242/581 (41%), Positives = 369/581 (63%), Gaps = 6/581 (1%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P    +  +L  C  +  + +G+ IHAH+     E D  +   ++NMYA+ G LE A+ +
Sbjct: 103 PERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDL 162

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
           F+K   +D VS+T LI+GY+  G   +A  LF +M      F PNE T+ ++L A     
Sbjct: 163 FDKMPTKDMVSWTVLISGYSQSGQASEALALFPKM--LHLGFQPNEFTLSSLLKASGTGP 220

Query: 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG 307
           S   G  + +    +G   N+HV ++L+DMY++   + +A+ +F S+  ++V+SWN +I 
Sbjct: 221 SDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIA 280

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH-QK 366
           G+    + +  + LF QML+   EP   T+ SV  ACA  G+L+ GKW+HA++ K+  Q 
Sbjct: 281 GHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQP 340

Query: 367 LNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSR 426
           +  +    +LIDMYAK G+IK A++VF  +  + + SWN++ISG A HG   +AL LF +
Sbjct: 341 IAYIG--NTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQ 398

Query: 427 MIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAG 486
           M+   +QP++ITF+ VL+AC+H+GLLD G+ YF  M + +KI  ++ H+  +VDLLGRAG
Sbjct: 399 MLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELM-KKHKIEAQVAHHVTVVDLLGRAG 457

Query: 487 LFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSN 546
             +EA   ++ M +KP AA+W +LLG+CR+H  ++LG   A+ + EL+P + G +VLLSN
Sbjct: 458 RLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSN 517

Query: 547 MYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDE 606
           +YA AGR  D A +R  + + G+KK P CS +E+ + VH F+  D  HP  + I  M ++
Sbjct: 518 IYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEK 577

Query: 607 IDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRV 666
           I   +++ G+VPDTS VL+ M+++ +E  L +HSEKLA+A+ ++ T PG TIRI KN+R+
Sbjct: 578 ISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRI 637

Query: 667 CGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           CG+CHSA K  S++  REII RD NRFHHF  G CSC DYW
Sbjct: 638 CGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 678



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 126/387 (32%), Positives = 213/387 (55%), Gaps = 9/387 (2%)

Query: 36  LLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +L+KCT ++ +KQ   +H+ I  +   +    L+ ++ + A    G L  A  +F+ +  
Sbjct: 111 MLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKC--GSLEEAQDLFDKMPT 168

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V W  +I G+S S     A+  + +M+  GF PN +T   +LK+     +   G+Q+
Sbjct: 169 KDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQL 228

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           HA  LK G + +  V +SL++MYA+   +  A+++FN  + ++ VS+ ALI G+A +G  
Sbjct: 229 HAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEG 288

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           +   +LF +M    + F P   T  +V +ACA  GSLE G WV + +   G     ++ N
Sbjct: 289 EHVMRLFLQM--LRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGN 346

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            LIDMY+K G +  A+ +F  + K+D++SWN +I GY       EAL LF QML++ ++P
Sbjct: 347 TLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQP 406

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N++TFLSVL AC++ G LD G++    + K H+    V+   +++D+  + G +  A + 
Sbjct: 407 NEITFLSVLTACSHSGLLDEGQYYFELM-KKHKIEAQVAHHVTVVDLLGRAGRLNEANKF 465

Query: 393 FDGMGYK-TLASWNAMISGLAMHGKAD 418
            + M  K T A W A++    MH   D
Sbjct: 466 IEEMPIKPTAAVWGALLGSCRMHKNMD 492



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 165/310 (53%), Gaps = 25/310 (8%)

Query: 7   SLTLSPSILH--FPPSSDPPYKLLQNQPSLALLSKCTNM----QNIKQVHSQIIKTGLHN 60
           +L L P +LH  F P          N+ +L+ L K +       + +Q+H+  +K G   
Sbjct: 190 ALALFPKMLHLGFQP----------NEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDM 239

Query: 61  TQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVR 120
                S L+++ A   +  +  A ++F ++   N V WN +I GH+        ++ +++
Sbjct: 240 NVHVGSSLLDMYA--RWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQ 297

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           M+  GF P  +T+  +  +CA   ++ +GK +HAHV+K G +   ++  +LI+MYA++G 
Sbjct: 298 MLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGS 357

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
           ++ A+ VF +   +D VS+ ++I+GYA  G   +A QLF++M   +    PNE T ++VL
Sbjct: 358 IKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQM--LKAKVQPNEITFLSVL 415

Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNL--HVTNALIDMYSKCGDLVKARDLFESIE-KR 297
           +AC+H G L+ G +   L++ H + + +  HVT  ++D+  + G L +A    E +  K 
Sbjct: 416 TACSHSGLLDEGQYYFELMKKHKIEAQVAHHVT--VVDLLGRAGRLNEANKFIEEMPIKP 473

Query: 298 DVISWNVMIG 307
               W  ++G
Sbjct: 474 TAAVWGALLG 483



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 123/272 (45%), Gaps = 39/272 (14%)

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
           ++EP    +  +L  C YL  L  G+ IHA+I  +  + +++ L   +++MYAKCG+++ 
Sbjct: 100 SLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFE-DDLVLLNFILNMYAKCGSLEE 158

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A+ +FD M  K + SW  +ISG +  G+A +AL+LF +M+  G QP++ T   +L A   
Sbjct: 159 AQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGT 218

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK------- 501
                 GRQ  +A    Y     +     ++D+  R     EA+ +  ++  K       
Sbjct: 219 GPSDHHGRQ-LHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNA 277

Query: 502 ---------------------------PDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534
                                      P    ++S+  AC   G LE G+ V  H+++  
Sbjct: 278 LIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIK-S 336

Query: 535 PENPGAYV--LLSNMYAGAGRWDDVATIRTRL 564
              P AY+   L +MYA +G   D   +  RL
Sbjct: 337 GGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRL 368


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 253/599 (42%), Positives = 379/599 (63%), Gaps = 43/599 (7%)

Query: 145 AISEGKQIHAHVLKLGL---ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTA 201
           ++ E  QIHA +L+  L      P ++  L   YA +G++  +  +F+++   D   +TA
Sbjct: 39  SVDEVLQIHAAILRHNLLIHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTA 98

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
            I   +  G  D A  L+ ++   + N  PNE T  ++L +C    S + G  + + +  
Sbjct: 99  AINTASINGLKDQAFLLYVQLLSSQIN--PNEFTFSSILKSC----STKSGKLIHTHVLK 152

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKA-------------------------------RDL 290
            GLG + +V   L+D+Y+K GD+V A                               R L
Sbjct: 153 FGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARAL 212

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVLPACAYLGA 349
           F+ + +RD++SWNVMI GY+      +ALMLF+++L     +P+++T ++ L AC+ +GA
Sbjct: 213 FDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGA 272

Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
           L+ G+WIH +++ +  +LN V + T+LIDMY+KCG+++ A  VF+    K + +WNAMI+
Sbjct: 273 LETGRWIHVFVNSSRIRLN-VKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIT 331

Query: 410 GLAMHGKADKALSLFSRMIG-EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
           G AMHG +  AL LF  M G  GLQP DITF+G L AC HAGL++ G Q F +M Q+Y I
Sbjct: 332 GYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGI 391

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
            PK++HYGC+V LLGRAG    A  ++K M M+ D+ +W+S+LG+C++HG   LG+ +A+
Sbjct: 392 KPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAE 451

Query: 529 HLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFL 588
           +L+     N G YVLLSN+YA  G ++ VA +R  + +KG+ K PG S+IE+ + VHEF 
Sbjct: 452 YLIGQNISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFR 511

Query: 589 VGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYG 648
            GD+ H +SK IY ML ++   ++  G+VP+T+ VL+D++E  KE +L  HSE+LAIAYG
Sbjct: 512 AGDREHLKSKEIYTMLRKMSERIKSHGYVPNTNTVLHDLEETEKERSLQVHSERLAIAYG 571

Query: 649 LISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           LISTKPG+ ++I KNLRVC +CH+ TKLISKI  R+I+ RDRNRFHHF DG+CSC+D+W
Sbjct: 572 LISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFSDGSCSCDDFW 630



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 133/448 (29%), Positives = 225/448 (50%), Gaps = 43/448 (9%)

Query: 23  PPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLH-NTQFALSKLIEICAVSPFGDLS 81
           PP KL         +    ++  + Q+H+ I++  L  + ++ +  L    A +  G + 
Sbjct: 26  PPEKLA------VFIDNSHSVDEVLQIHAAILRHNLLIHPRYPVLNLKLHRAYASHGKIR 79

Query: 82  YALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCA 141
           ++L +F    +P+  ++   I   S++     A   YV+++ S   PN +TF  ILKSC+
Sbjct: 80  HSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCS 139

Query: 142 KISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTA 201
             S    GK IH HVLK GL  DP+V T L+++YA+ G++ SA+ VF++   R  VS TA
Sbjct: 140 TKS----GKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTA 195

Query: 202 LITGYASRGYLDDARQLFDEMPIR-------------EENF-----------------VP 231
           +IT YA +G ++ AR LFD M  R             +  F                  P
Sbjct: 196 MITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKP 255

Query: 232 NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLF 291
           +E TVV  LSAC+ +G+LE G W+   +    +  N+ V  ALIDMYSKCG L +A  +F
Sbjct: 256 DEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVF 315

Query: 292 ESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ-SNIEPNDVTFLSVLPACAYLGAL 350
               ++D+++WN MI GY      ++AL LF +M   + ++P D+TF+  L ACA+ G +
Sbjct: 316 NDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLV 375

Query: 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMIS 409
           + G  I   + + +     +  +  L+ +  + G +K A ++   M  +  +  W++++ 
Sbjct: 376 NEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLG 435

Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDI 437
              +HG+      +   +IG+ +    I
Sbjct: 436 SCKLHGEFMLGKEIAEYLIGQNISNSGI 463


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 251/577 (43%), Positives = 367/577 (63%), Gaps = 5/577 (0%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           +  +L  C    A+ EG+++HAH++K       ++ T LI +Y +   L  AR VF++  
Sbjct: 13  YNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMR 72

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
            R+ VS+TA+I+GY+ RG+  +A  LF +M +R +   PNE T  TVLS+C      ELG
Sbjct: 73  ERNVVSWTAMISGYSQRGFASEALHLFVQM-LRSDT-EPNEFTFATVLSSCTGFSGFELG 130

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
             + S I      +++ V ++L+DMY+K G + +AR +FE + +RDV+S   +I GY   
Sbjct: 131 RQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 190

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
              +EAL LF ++ +  +  N VT+ S+L A + L ALD GK +H+++ +       V L
Sbjct: 191 GLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFY-VVL 249

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG- 431
             SLIDMY+KCGN+  A ++F+ M  +T+ SWNAM+ G + HGK  + + LF  M  E  
Sbjct: 250 QNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENK 309

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY-KISPKLQHYGCMVDLLGRAGLFDE 490
           ++PD +TF+ VLS C+H GL D G + F+ M+    +I   ++HYGC++DLLGRAG  +E
Sbjct: 310 VKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEE 369

Query: 491 AEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAG 550
           A  L+K M  +P AAIW SLLGACRVH    +GE V   LLE+EPEN G YV+LSN+YA 
Sbjct: 370 AFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYAS 429

Query: 551 AGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDAL 610
           AGRW+DV  +R  + +K + K PG S IE+   +H F   D+ HP+ + ++  + E+   
Sbjct: 430 AGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVRELLVK 489

Query: 611 LEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNC 670
            ++SG+VPD S VLYD+DEE KE  L  HSEKLA+A+GLIST  G  +R++KNLR+C +C
Sbjct: 490 FKESGYVPDQSCVLYDVDEEQKEKILLGHSEKLALAFGLISTSEGVPLRVIKNLRICVDC 549

Query: 671 HSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           H+  K +SK++ R++  RD+NRFHH   G CSC DYW
Sbjct: 550 HNFAKFVSKVYGRQVSIRDKNRFHHVAGGICSCGDYW 586



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/389 (32%), Positives = 211/389 (54%), Gaps = 10/389 (2%)

Query: 36  LLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LL++C N + +++   VH+ +IKT      +  ++LI +   +    L  A  VF+ +RE
Sbjct: 16  LLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIIL--YTKCECLGCARHVFDEMRE 73

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            N V W  +I G+S       A+  +V+M+ S   PN +TF  +L SC   S    G+QI
Sbjct: 74  RNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQI 133

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H+H+ K   E+  FV +SL++MYA+ G +  AR VF     RD VS TA+I+GYA  G  
Sbjct: 134 HSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 193

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           ++A +LF    ++ E    N  T  ++L+A + + +L+ G  V S +    L   + + N
Sbjct: 194 EEALELF--CRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQN 251

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN-IE 331
           +LIDMYSKCG+L  AR +F ++  R VISWN M+ GY+      E + LF+ M + N ++
Sbjct: 252 SLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVK 311

Query: 332 PNDVTFLSVLPACAYLGALDLG-KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           P+ VTFL+VL  C++ G  D G +     ++   +    +  +  +ID+  + G ++ A 
Sbjct: 312 PDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAF 371

Query: 391 QVFDGMGYK-TLASWNAMISGLAMHGKAD 418
           ++   M ++ T A W +++    +H   +
Sbjct: 372 ELIKKMPFEPTAAIWGSLLGACRVHSNTN 400


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 265/690 (38%), Positives = 394/690 (57%), Gaps = 25/690 (3%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           +L++ CT +Q +   +++H  +I TG        + L+++ A    G L  A  VFE + 
Sbjct: 15  SLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYA--KCGSLDDAKRVFEGME 72

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             +   W++II  ++ +    +A+  Y RMI  G  PN  TF   L  CA ++ +++G+ 
Sbjct: 73  IKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRA 132

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IH  +L   +  D  +  SL+NMY +  E+  AR VF     R+  SYTA+I+ Y   G 
Sbjct: 133 IHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGE 192

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
             +A +LF  M  + E   PN  T  T+L A   +G+LE G  V   +   G  +N+ V 
Sbjct: 193 HAEALELFSRMS-KVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQ 251

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           NAL+ MY KCG  V+AR +F+S+  R+VISW  MI  Y    + +EAL LF++M   ++E
Sbjct: 252 NALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRM---DVE 308

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+ V+F S L ACA LGALD G+ IH  + + H  L +  + TSL+ MYA+CG++  A +
Sbjct: 309 PSGVSFSSALNACALLGALDEGREIHHRVVEAH--LASPQMETSLLSMYARCGSLDDARR 366

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VF+ M  +   S NAMI+    HG+  +AL ++ RM  EG+  D ITFV VL AC+H  L
Sbjct: 367 VFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQEGIPADGITFVSVLVACSHTSL 426

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           +   R +F +++ D+ + P ++HY CMVD+LGR+G   +AE L++TM  + DA  W +LL
Sbjct: 427 VADCRDFFQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQTDAVAWMTLL 486

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
             C+ HG L  GE  A+ + EL P     YV LSNMYA A R+DD   +R  + ++G+  
Sbjct: 487 SGCKRHGDLNRGERAARKVFELAPAETLPYVFLSNMYAAAKRFDDARRVRKEMEERGVTT 546

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALL-------EKSGFVPDTSEVL 624
               S IE+ + +H F  G +   Q  H    ++ + +LL       +++G+VPDT EV 
Sbjct: 547 PVAVSYIEIDNELHMFTSGGRDEQQEGHDGRTMERVRSLLLELLEPMKQAGYVPDTREVY 606

Query: 625 YDMD----EEWKEGALSHHSEKLAIAYGLISTK---PGTTIRIVKNLRVCGNCHSATKLI 677
            +      EE K+ +L  HSE+LAIAYGLI+ K       +R+V + RVC +CHSA KL+
Sbjct: 607 LEQQGGTSEEEKQRSLCFHSERLAIAYGLIAAKDPDDSRPLRVVNSHRVCSDCHSAIKLL 666

Query: 678 SKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           S I  + I  RD NRFHHF+ G CSC D+W
Sbjct: 667 SDIIEKTIFVRDGNRFHHFEKGACSCGDHW 696



 Score =  219 bits (557), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 123/396 (31%), Positives = 215/396 (54%), Gaps = 10/396 (2%)

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
           G V + +    ++ +C K+ A+ EG+++H H++  G  +D  + T+L+ MYA+ G L+ A
Sbjct: 5   GIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDA 64

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
           + VF    ++D  +++++I+ YA  G  + A  L+  M    E   PN  T    L  CA
Sbjct: 65  KRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIA--EGVEPNVVTFACALGGCA 122

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
            +  L  G  +   I    +  +  + ++L++MY KC ++V+AR +FE ++ R+V S+  
Sbjct: 123 SVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTA 182

Query: 305 MIGGYTHTSDYKEALMLFRQMLQ-SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363
           MI  Y    ++ EAL LF +M +   IEPN  TF ++L A   LG L+ G+ +H ++   
Sbjct: 183 MISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASR 242

Query: 364 HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSL 423
                NV +  +L+ MY KCG+   A +VFD M  + + SW +MI+  A HG   +AL+L
Sbjct: 243 GFD-TNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNL 301

Query: 424 FSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLG 483
           F RM    ++P  ++F   L+AC   G LD GR+  + +++ +  SP+++    ++ +  
Sbjct: 302 FKRM---DVEPSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQME--TSLLSMYA 356

Query: 484 RAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
           R G  D+A  +   M+ + DA    +++ A   HGR
Sbjct: 357 RCGSLDDARRVFNRMKTR-DAFSCNAMIAAFTQHGR 391



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 107/375 (28%), Positives = 182/375 (48%), Gaps = 32/375 (8%)

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
           + E   V ++  V ++++AC  + +LE G  +   +   G  +++ +  AL+ MY+KCG 
Sbjct: 1   MEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGS 60

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           L  A+ +FE +E +D+ +W+ +I  Y      + A++L+R+M+   +EPN VTF   L  
Sbjct: 61  LDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGG 120

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
           CA +  L  G+ IH  I  +    ++V L  SL++MY KC  +  A +VF+GM  + + S
Sbjct: 121 CASVAGLADGRAIHQRILASKVPQDDV-LQDSLLNMYLKCDEMVEARKVFEGMKARNVRS 179

Query: 404 WNAMISGLAMHGKADKALSLFSRMIG-EGLQPDDITFVGVLSACNHAGLLDIGRQYF--- 459
           + AMIS     G+  +AL LFSRM   E ++P+  TF  +L A    G L+ GR+     
Sbjct: 180 YTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHL 239

Query: 460 -------NAMIQ--------------------DYKISPKLQHYGCMVDLLGRAGLFDEAE 492
                  N ++Q                    D   +  +  +  M+    + G   EA 
Sbjct: 240 ASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEAL 299

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552
            L K M+++P    ++S L AC + G L+ G  +   ++E    +P     L +MYA  G
Sbjct: 300 NLFKRMDVEPSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQMETSLLSMYARCG 359

Query: 553 RWDDVATIRTRLNDK 567
             DD   +  R+  +
Sbjct: 360 SLDDARRVFNRMKTR 374


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 271/693 (39%), Positives = 402/693 (58%), Gaps = 12/693 (1%)

Query: 17  FPP-SSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVS 75
           FPP SS  P K L     L+L      + +  Q+++QI+   LH +   L   +   A  
Sbjct: 6   FPPISSRNPTKTL-----LSLFRFTKTLASNHQLNAQILVNALHRS--LLFGPMIFGAYI 58

Query: 76  PFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPF 135
             G L  A   F  I   N   WN I+  HS +      ++ + RM+  G + +++   F
Sbjct: 59  QLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVF 118

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
            +K+C  +S     K  H+  +KL LE DP+V  +L+N+Y + G LE A  VF +  L++
Sbjct: 119 AVKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKN 178

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
           +V +  +I G+ +        +LF  M  R   F  +   V  ++ AC ++ + + G   
Sbjct: 179 SVIWGVMIKGHLNFSEEFGVFELFSRM--RRSGFELDPFVVEGLIQACGNVYAGKEGKTF 236

Query: 256 CSL-IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
             L I+ + + SN  +  +L+DMY KCG L  A  LFE I  RDV+ W+ +I G+     
Sbjct: 237 HGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGR 296

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
             E++ +FRQML  ++ PN VTF S++ AC+ LG+L  G+ +H Y+ +N  +L+ V  +T
Sbjct: 297 ALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELD-VKNYT 355

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
           S IDMYAKCG I  A +VF  +  K + SW+ MI+G  MHG   +AL+LF  M      P
Sbjct: 356 SFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLP 415

Query: 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494
           + +TFV VLSAC+H+G ++ G  +F +M +DY I+P  +HY CMVDLLGRAG  DEA + 
Sbjct: 416 NSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSF 475

Query: 495 LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554
           +  M  +P A+ W +LLGACR+H R EL E VAK LL LE +  G YV+LSN+YA  G W
Sbjct: 476 INNMPTEPGASAWGALLGACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMW 535

Query: 555 DDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKS 614
           + V   R ++ +KG+ K+ G +SIE+   ++ F   D+   ++  I  + + +   + + 
Sbjct: 536 EMVKKTRLKMCEKGIHKIVGFTSIEIEEKLYLFSSEDRFAYKNTQIESLWNSLKERMREL 595

Query: 615 GFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSAT 674
           G+VPD   VL+D+D+E K+  L  HSEKLAI +GL+++  G  IRI KN+RVCG+CH+A+
Sbjct: 596 GYVPDLRFVLHDVDDEVKQEVLCGHSEKLAIVFGLLNSGEGMPIRITKNMRVCGDCHTAS 655

Query: 675 KLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           K IS I  R+II RD  RFHH +DG CSC DYW
Sbjct: 656 KFISLITRRKIIMRDVKRFHHVQDGVCSCGDYW 688


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 264/661 (39%), Positives = 409/661 (61%), Gaps = 7/661 (1%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSL 107
           ++H+ I+K+      +  + L+ +     FG +SYA  +F+ + E + + WN++I G + 
Sbjct: 133 EIHAAILKSNQVLDVYVANALVAMHV--RFGKMSYAARIFDELDEKDNITWNSMIAGFTQ 190

Query: 108 SSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFV 167
           +     A++F+  +  +   P+  +   IL +  ++  +  GK+IHA+ +K  L+S+  +
Sbjct: 191 NGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRI 250

Query: 168 HTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREE 227
             +LI+MY++   +  A LVF+K   +D +S+T +I  YA      +A +L  +  ++ +
Sbjct: 251 GNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRK--VQTK 308

Query: 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA 287
               +   + + L AC+ +  L     V       GL S+L + N +ID+Y+ CG++  A
Sbjct: 309 GMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGL-SDLMMQNMIIDVYADCGNINYA 367

Query: 288 RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347
             +FESI+ +DV+SW  MI  Y H     EAL +F  M ++++EP+ +T +S+L A A L
Sbjct: 368 TRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASL 427

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
            AL+ GK IH +I +    L   ++  SL+DMYA CG+++ A +VF     K+L  W  M
Sbjct: 428 SALNKGKEIHGFIFRKGFMLEGSTV-NSLVDMYACCGSLENAYKVFICTRSKSLVLWTTM 486

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           I+   MHG+   A+ LFS M  + L PD ITF+ +L AC+H+GL++ G++    M   Y+
Sbjct: 487 INAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQ 546

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
           + P  +HY C+VDLLGRA   +EA   +K+M+++P A +W + LGACR+H   +LGE  A
Sbjct: 547 LEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAA 606

Query: 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF 587
           + LL+L+P++PG+YVL+SN++A +GRW DV  +R R+   G+KK PGCS IEVG+ VH F
Sbjct: 607 QKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKVHTF 666

Query: 588 LVGDKVHPQSKHIYEMLDEIDALLEKS-GFVPDTSEVLYDMDEEWKEGALSHHSEKLAIA 646
           LV DK HP+S  IY+ L +I   LEK  G+VP T  VL+++ +E K   L  HSE+LAIA
Sbjct: 667 LVRDKSHPESYKIYQKLAQITEKLEKEGGYVPQTKLVLHNVGKEEKVQMLYGHSERLAIA 726

Query: 647 YGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDY 706
           YGL+ST  GT IRI KNLRVC +CH+  KL+SK F RE+I RD +RFHHF+DG CSC D+
Sbjct: 727 YGLMSTSEGTPIRITKNLRVCVDCHTFCKLVSKFFERELIVRDASRFHHFEDGVCSCGDF 786

Query: 707 W 707
           W
Sbjct: 787 W 787



 Score =  211 bits (538), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 142/489 (29%), Positives = 253/489 (51%), Gaps = 12/489 (2%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
            +L  C  +++I    ++H  IIK G  +  F  + L+ + A     D+  A  +F+ + 
Sbjct: 15  CVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYA--KCNDILGARKLFDRMN 72

Query: 92  EPNQVI-WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
           E N V+ WN+II  +SL+   + A+  +  M  +G   NTYT    L++C   S    G 
Sbjct: 73  ERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGM 132

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           +IHA +LK     D +V  +L+ M+ + G++  A  +F++   +D +++ ++I G+   G
Sbjct: 133 EIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNG 192

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
             ++A Q F    +++ N  P+E +++++L+A   +G L  G  + +    + L SNL +
Sbjct: 193 LYNEALQFF--CGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRI 250

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            N LIDMYSKC  +  A  +F+ +  +D+ISW  +I  Y   + + EAL L R++    +
Sbjct: 251 GNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGM 310

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           + + +   S L AC+ L  L   K +H Y  K  + L+++ +   +ID+YA CGNI  A 
Sbjct: 311 DVDTMMIGSTLLACSGLRCLSHAKEVHGYTLK--RGLSDLMMQNMIIDVYADCGNINYAT 368

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           ++F+ +  K + SW +MIS    +G A++AL +F  M    ++PD IT V +LSA     
Sbjct: 369 RMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLS 428

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
            L+ G++  +  I       +      +VD+    G  + A  +      K    +WT++
Sbjct: 429 ALNKGKE-IHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKS-LVLWTTM 486

Query: 511 LGACRVHGR 519
           + A  +HGR
Sbjct: 487 INAYGMHGR 495



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 129/426 (30%), Positives = 224/426 (52%), Gaps = 8/426 (1%)

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           M + G   +++TFP +LK+C  +  I  G +IH  ++K G +S  FV  SL++MYA+  +
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 181 LESARLVFNKSSLR-DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTV 239
           +  AR +F++ + R D VS+ ++I+ Y+  G   +A  LF EM  ++     N  T+V  
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREM--QKAGVGANTYTLVAA 118

Query: 240 LSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV 299
           L AC      +LG  + + I       +++V NAL+ M+ + G +  A  +F+ ++++D 
Sbjct: 119 LQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDN 178

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
           I+WN MI G+T    Y EAL  F  +  +N++P++V+ +S+L A   LG L  GK IHAY
Sbjct: 179 ITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAY 238

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADK 419
             KN    +N+ +  +LIDMY+KC  +  A  VFD M  K L SW  +I+  A +    +
Sbjct: 239 AMKNWLD-SNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTE 297

Query: 420 ALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479
           AL L  ++  +G+  D +     L AC+    L   ++     ++       +Q+   ++
Sbjct: 298 ALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSDLMMQNM--II 355

Query: 480 DLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG 539
           D+    G  + A  + ++++ K D   WTS++ +C VH  L        +L++     P 
Sbjct: 356 DVYADCGNINYATRMFESIKCK-DVVSWTSMI-SCYVHNGLANEALGVFYLMKETSVEPD 413

Query: 540 AYVLLS 545
           +  L+S
Sbjct: 414 SITLVS 419


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 253/676 (37%), Positives = 400/676 (59%), Gaps = 8/676 (1%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIE-ICAVSPFGDLSYALLVFETIRE 92
           L+  ++  ++  + QVH  ++K G  +T    + L++  C     G    A  +F+ + E
Sbjct: 146 LSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLG---LACHLFKHMAE 202

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V +N ++ G+S       AI  + +M   GF P+ +TF  +L +  ++  I  G+Q+
Sbjct: 203 KDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQV 262

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H+ V+K     + FV  +L++ Y+++  +  AR +F +    D +SY  LIT  A  G +
Sbjct: 263 HSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRV 322

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           +++ +LF E+      F   +    T+LS  A+  +LE+G  + S        S + V N
Sbjct: 323 EESLELFRELQFTR--FDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGN 380

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           +L+DMY+KC    +A  +F  +  +  + W  +I GY     +++ L LF +M ++ I  
Sbjct: 381 SLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGA 440

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           +  T+ S+L ACA L +L LGK +H+ I ++   L+NV   ++L+DMYAKCG+IK A Q+
Sbjct: 441 DSATYASILRACANLASLTLGKQLHSRIIRS-GCLSNVFSGSALVDMYAKCGSIKEALQM 499

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F  M  +   SWNA+IS  A +G    AL  F +MI  GLQP+ ++F+ +L AC+H GL+
Sbjct: 500 FQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLV 559

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           + G QYFN+M Q YK+ P+ +HY  MVD+L R+G FDEAE L+  M  +PD  +W+S+L 
Sbjct: 560 EEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILN 619

Query: 513 ACRVHGRLELGESVAKHLLELEP-ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
           +CR+H   EL    A  L  ++   +   YV +SN+YA AG WD V  ++  L ++G++K
Sbjct: 620 SCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRK 679

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
           VP  S +E+    H F   D  HPQ+K I   LDE++  +E+ G+ PD++  L+++DEE 
Sbjct: 680 VPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLDELEKQMEEQGYKPDSTCALHNVDEEV 739

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           K  +L +HSE++AIA+ LIST  G+ I ++KNLR C +CH+A K+ISKI NREI  RD +
Sbjct: 740 KVESLKYHSERIAIAFALISTPKGSPILVMKNLRACNDCHAAIKVISKIVNREITVRDSS 799

Query: 692 RFHHFKDGNCSCNDYW 707
           RFHHF DG+CSC DYW
Sbjct: 800 RFHHFTDGSCSCKDYW 815



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 142/524 (27%), Positives = 246/524 (46%), Gaps = 42/524 (8%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G+LS A  +F+++ + + V W  +I G++  +  + A   +  M   G VP+  T   +L
Sbjct: 87  GNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLL 146

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
               +  +++E  Q+H HV+K+G +S   V  SL++ Y +   L  A  +F   + +D V
Sbjct: 147 SGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNV 206

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           ++ AL+TGY+  G+  DA  LF +M  ++  F P+E T   VL+A   M  +E G  V S
Sbjct: 207 TFNALLTGYSKEGFNHDAINLFFKM--QDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHS 264

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
            +       N+ V NAL+D YSK   +V+AR LF  + + D IS+NV+I         +E
Sbjct: 265 FVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEE 324

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           +L LFR++  +  +     F ++L   A    L++G+ IH+        ++ V +  SL+
Sbjct: 325 SLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVT-DAISEVLVGNSLV 383

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI 437
           DMYAKC     A ++F  + +++   W A+ISG    G  +  L LF  M    +  D  
Sbjct: 384 DMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSA 443

Query: 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT 497
           T+  +L AC +   L +G+Q  + +I+   +S        +VD+  + G   EA  + + 
Sbjct: 444 TYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSG-SALVDMYAKCGSIKEALQMFQE 502

Query: 498 ME----------------------------------MKPDAAIWTSLLGACRVHGRLELG 523
           M                                   ++P++  + S+L AC   G +E G
Sbjct: 503 MPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEG 562

Query: 524 ESV---AKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564
                    + +LEP     Y  + +M   +GR+D+   +  R+
Sbjct: 563 LQYFNSMTQVYKLEPRRE-HYASMVDMLCRSGRFDEAEKLMARM 605



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 197/420 (46%), Gaps = 12/420 (2%)

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           MI +GF PNT  F F +++  +   +   +++   +    + S      ++I  Y ++G 
Sbjct: 33  MIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVIST----NTMIMGYLKSGN 88

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
           L +AR +F+    R  V++T LI GYA      +A  LF +M       VP+  T+ T+L
Sbjct: 89  LSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMC--RHGMVPDHITLATLL 146

Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVI 300
           S      S+     V   +   G  S L V N+L+D Y K   L  A  LF+ + ++D +
Sbjct: 147 SGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNV 206

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           ++N ++ GY+      +A+ LF +M      P++ TF +VL A   +  ++ G+ +H+++
Sbjct: 207 TFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFV 266

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
            K +  + NV +  +L+D Y+K   I  A ++F  M      S+N +I+  A +G+ +++
Sbjct: 267 VKCN-FVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEES 325

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
           L LF  +           F  +LS   ++  L++GRQ  +  I    IS  L     +VD
Sbjct: 326 LELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVG-NSLVD 384

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540
           +  +   F EA  +   +  +     WT+L+      G   L E   K  +E+     GA
Sbjct: 385 MYAKCDKFGEANRIFADLAHQSSVP-WTALISGYVQKG---LHEDGLKLFVEMHRAKIGA 440


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 256/600 (42%), Positives = 372/600 (62%), Gaps = 44/600 (7%)

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMY--AQNGELESARLVFNKSSLRDAVSYTALITGYA 207
           KQIHAH +K G    P     L+     +   E++ AR  F++    +  S+  +I   A
Sbjct: 32  KQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCFSWNTIIRALA 91

Query: 208 SRGYLD-------DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE 260
                D       +A   F  M + +    PN+ T   VL ACA +  +E G  +   + 
Sbjct: 92  DSDDDDLFHVNSLEALLYFSHM-LTDGLVEPNKFTFPCVLKACAKLARIEEGKQLHGFVV 150

Query: 261 GHGLGS--------------------------------NLHVTNALIDMYSKCGDLVKAR 288
             GL S                                N+ + N +ID Y + GDL  +R
Sbjct: 151 KLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLRASR 210

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
           +LF+S+  + V+SWNVMI G      +KEA+ +F  M   ++ PN VT +SVLPA + LG
Sbjct: 211 ELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLG 270

Query: 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM-GYKTLASWNAM 407
           A++LGKW+H + +KN  ++++V L ++LIDMY+KCG+I  A QVF+G+   K   +W+A+
Sbjct: 271 AIELGKWVHLFAEKNEIEIDDV-LGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAI 329

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           I GLAMHG+A  AL  F RM   G+ P D+ ++GVLSAC+HAGL++ GR  +  M+    
Sbjct: 330 IGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVG 389

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
           + P+++HYGCMVDLLGRAG  +EAE L+  M +KPD  I  +LLGAC++HG +E+GE +A
Sbjct: 390 LLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGERIA 449

Query: 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF 587
           K L+   P + G+YV LSNM+A  G W+ V  +R ++ +  ++K PGCS IE+  V+HEF
Sbjct: 450 KILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSWIELDGVIHEF 509

Query: 588 LVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAY 647
           LV D  HP+++ I+ ML+E+   L   G+ P+T++VL +MDE+ K+ AL +HSEK+AIA+
Sbjct: 510 LVEDDSHPRAEGIHSMLEEMSDRLRSVGYRPNTTQVLLNMDEKEKQSALHYHSEKIAIAF 569

Query: 648 GLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           GLIST+P T ++IVKNLRVC +CHS+ KL+SKI+NR+II RDR RFHHF++G+CSC DYW
Sbjct: 570 GLISTRPQTPLQIVKNLRVCEDCHSSIKLVSKIYNRKIIVRDRKRFHHFENGSCSCMDYW 629



 Score =  221 bits (564), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 136/460 (29%), Positives = 232/460 (50%), Gaps = 73/460 (15%)

Query: 37  LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQV 96
           +S+C   +++KQ+H+  IKTG  +   A ++L++   +S   ++ YA   F  I  PN  
Sbjct: 22  ISRCKTTRHLKQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCF 81

Query: 97  IWNNIIRGHS-------LSSSPVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKISAISE 148
            WN IIR  +          + + A+ ++  M+  G V PN +TFP +LK+CAK++ I E
Sbjct: 82  SWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEE 141

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-DAVSYTALITGYA 207
           GKQ+H  V+KLGL SD FV ++L+ +Y   G ++ A ++F ++ L  + V +  +I GY 
Sbjct: 142 GKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYV 201

Query: 208 SRGYLDDARQLFDEMP-----------------------------IREENFVPNESTVVT 238
             G L  +R+LFD MP                             ++  +  PN  T+V+
Sbjct: 202 RMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVS 261

Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KR 297
           VL A + +G++ELG WV    E + +  +  + +ALIDMYSKCG + KA  +FE I  K+
Sbjct: 262 VLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKK 321

Query: 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357
           + I+W+ +IGG       ++AL  F +M Q+ + P+DV ++ VL AC++ G ++ G+ I+
Sbjct: 322 NPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIY 381

Query: 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA 417
            ++      L  +  +  ++D+  + G ++ AEQ+   M  K                  
Sbjct: 382 YHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVK------------------ 423

Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
                           PDD+    +L AC   G +++G +
Sbjct: 424 ----------------PDDVILKALLGACKMHGNIEMGER 447


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 260/668 (38%), Positives = 400/668 (59%), Gaps = 37/668 (5%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           KQVHS++I  G     F  + LI++ A     D    L VF+ + E NQV WN+II   +
Sbjct: 195 KQVHSKLIACGFKGDTFVGNALIDMYAKC--DDEESCLKVFDEMGERNQVTWNSIISAEA 252

Query: 107 LSSSPVVAIKFYVRMILS--GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESD 164
                  A+  ++RM  S  G  P+ +TF  +L  CA     ++G+QIHAH+++  +  +
Sbjct: 253 QFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKN 312

Query: 165 PFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPI 224
             V T L++MY++ G L  A+ +FN+ + R+A S+ ++I GY   G   +A +LF +M +
Sbjct: 313 IIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQL 372

Query: 225 REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
                 P+  ++ ++LS+C  +   + G  + + I  + +     +   L+DMY+KCG +
Sbjct: 373 --NGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSM 430

Query: 285 VKARDLFESIEKRDVIS--WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
             A  +++   K+D  +  WN ++ GY +    KE+   F +ML+S+IE + +T ++++ 
Sbjct: 431 DYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIV- 489

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
                                    N + L T+L+DMY+KCG I  A  VFD M  K + 
Sbjct: 490 -------------------------NLLVLETALVDMYSKCGAITKARTVFDNMNGKNIV 524

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           SWNAMISG + HG + +AL L+  M  +G+ P+++TF+ +LSAC+H GL++ G + F +M
Sbjct: 525 SWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSM 584

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
            +DY I  K +HY CMVDLLGRAG  ++A+  ++ M ++P+ + W +LLGACRVH  +++
Sbjct: 585 QEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDM 644

Query: 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582
           G   A+ L EL+P+NPG YV++SN+YA AGRW +V  IR  +  KG+KK PG S IE+ S
Sbjct: 645 GRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINS 704

Query: 583 VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLY---DMDEEWKEGALSHH 639
            +  F  G K HP+++ IY  L  +    +  G++PDTS +L    D+ EE +E  L  H
Sbjct: 705 EIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQH 764

Query: 640 SEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDG 699
           SE+LA++ GLIS    +TIR+ KNLR+CG+CH+ATK ISKI  R IIARD NRFHHF++G
Sbjct: 765 SERLALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENG 824

Query: 700 NCSCNDYW 707
            CSC DYW
Sbjct: 825 KCSCGDYW 832


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 277/780 (35%), Positives = 433/780 (55%), Gaps = 85/780 (10%)

Query: 5   PSSLTLSPSI-LHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQF 63
           P+S +L+ ++  H   S   P     N+  L +  K +N+   +Q+  +I          
Sbjct: 26  PASFSLARAVHAHMIASGFKPRGHFLNRL-LEMYCKSSNLVYARQLFEEIPNPD------ 78

Query: 64  ALSKLIEICAVSPFGDLSYALLVFE--TIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRM 121
           A+++   I A    G+L     +F    +   + V +N +I G++ +     A++ +  M
Sbjct: 79  AIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAM 138

Query: 122 ILSGFVPNTYTFPFILKSCAK-ISAISEGKQIHAHVLKLGLES-DPFVHTSLINMYAQNG 179
               F P+ +TF  +L +    +    +  Q+H  V+K G+      V  +L+++Y +  
Sbjct: 139 RRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRA 198

Query: 180 E--------LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP-------- 223
                    + SAR +F++   RD +++T +ITGY     L+ AR++F+ M         
Sbjct: 199 SELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWN 258

Query: 224 ------------------IREENFVP---NESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
                              R+  F+    ++ T  T++SACA++GS ++G  V + I  +
Sbjct: 259 AMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKN 318

Query: 263 GLGSN----LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
            L  N    L V+NALI +Y K   + +AR +F ++  R++I+WN ++ GY +    +EA
Sbjct: 319 ELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEA 378

Query: 319 -------------------------------LMLFRQMLQSNIEPNDVTFLSVLPACAYL 347
                                          L LF+QM     EP D  F   L AC+ L
Sbjct: 379 KSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVL 438

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
           GAL+ G+ +HA +     + +++S+  ++I MYAKCG ++AAE VF  M    L SWN+M
Sbjct: 439 GALENGRQLHAQLVHLGYE-SSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSM 497

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           I+ L  HG   KA+ LF +M+ EG+ PD ITF+ VL+AC+HAGL++ GR YFN+M++ Y 
Sbjct: 498 IAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYG 557

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
           I+P   HY  MVDL  RAG+F  A  ++ +M  KP A +W +LL  CR+HG ++LG   A
Sbjct: 558 ITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAA 617

Query: 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF 587
           + L +L P+N G YVLLSN+YA  GRW++VA +R  + D+ ++K P CS IEV + VH F
Sbjct: 618 EQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVF 677

Query: 588 LVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAY 647
           +V D VHP+   +Y  L+++   ++K G++PDT  VL+DM+ E KE ALS HSEKLA+ +
Sbjct: 678 MVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGF 737

Query: 648 GLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           G++   PG T+R+ KN+R+CG+CH+A K +SK+  REII RDR RFHHFK+G+CSC DYW
Sbjct: 738 GIMKLPPGATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 135/500 (27%), Positives = 218/500 (43%), Gaps = 110/500 (22%)

Query: 126 FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR 185
            + N Y     L S    ++ S  + +HAH++  G +        L+ MY ++  L  AR
Sbjct: 9   LLANRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYAR 68

Query: 186 LVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPI--------------------- 224
            +F +    DA++ T LIT Y + G L+  R++F+  P+                     
Sbjct: 69  QLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDG 128

Query: 225 ----------REENFVPNESTVVTVLSACAHM--GSLELGNWVCSLIE-GHGLGSNLHVT 271
                     R ++F P++ T  +VLSA         + G   C++++ G G  S+  V 
Sbjct: 129 HSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSS-SVL 187

Query: 272 NALIDMYSK--------CGDLVKARDLFESIEKRDVIS---------------------- 301
           NAL+ +Y K        C  +V AR LF+ + KRD ++                      
Sbjct: 188 NALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFE 247

Query: 302 ---------WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL 352
                    WN MI GY H   ++EAL L R+M    I+ +D+T+ +++ ACA +G+  +
Sbjct: 248 AMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQM 307

Query: 353 GKWIHAYIDKNHQKLNN---VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA--- 406
           GK +HAYI KN    N+   +S+  +LI +Y K   +  A ++F  M  + + +WNA   
Sbjct: 308 GKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILS 367

Query: 407 ----------------------------MISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
                                       MISGLA +G  D+ L LF +M  +G +P D  
Sbjct: 368 GYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFA 427

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
           F G L+AC+  G L+ GRQ  +A +        L     M+ +  + G+ + AE++  TM
Sbjct: 428 FAGALTACSVLGALENGRQ-LHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTM 486

Query: 499 EMKPDAAIWTSLLGACRVHG 518
               D   W S++ A   HG
Sbjct: 487 P-SVDLVSWNSMIAALGQHG 505


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 241/595 (40%), Positives = 381/595 (64%), Gaps = 5/595 (0%)

Query: 114 AIKFYVRMILSGFVP-NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLI 172
           ++KF    +   ++P +   +  +LK C     +++G+ +H H+++     D  ++ +L+
Sbjct: 34  SLKFPSNDLEGSYIPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLL 93

Query: 173 NMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPN 232
           NMYA+ G LE AR VF+K   RD V++T LI+GY+      DA  LF++M      F PN
Sbjct: 94  NMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQM--LRFGFSPN 151

Query: 233 ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFE 292
           E T+ +V+ A A       G+ +       G  SN+HV +AL+D+Y++ G +  A+ +F+
Sbjct: 152 EFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFD 211

Query: 293 SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL 352
           ++E R+ +SWN +I G+      ++AL LF+ ML+    P+  ++ S+  AC+  G L+ 
Sbjct: 212 ALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQ 271

Query: 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLA 412
           GKW+HAY+ K+ +KL   +   +L+DMYAK G+I  A ++FD +  + + SWN++++  A
Sbjct: 272 GKWVHAYMIKSGEKLVAFA-GNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYA 330

Query: 413 MHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL 472
            HG  ++A+  F  M   G++P++I+F+ VL+AC+H+GLLD G  Y+  M +D  I  + 
Sbjct: 331 QHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVLEA 389

Query: 473 QHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
            HY  +VDLLGRAG  + A   ++ M ++P AAIW +LL ACR+H   ELG   A+H+ E
Sbjct: 390 WHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFE 449

Query: 533 LEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDK 592
           L+P++PG +V+L N+YA  GRW+D A +R ++ + G+KK P CS +E+ + +H F+  D+
Sbjct: 450 LDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDE 509

Query: 593 VHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLIST 652
            HPQ + I    +E+ A +++ G+VPDTS V+  +D++ +E  L +HSEK+A+A+ L++T
Sbjct: 510 RHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNT 569

Query: 653 KPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            PG+TI I KN+RVCG+CHSA KL SK   REII RD NRFHHFKDG CSC DYW
Sbjct: 570 PPGSTIHIKKNIRVCGDCHSAIKLASKAVGREIIVRDTNRFHHFKDGACSCKDYW 624



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/405 (30%), Positives = 209/405 (51%), Gaps = 11/405 (2%)

Query: 36  LLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LL KCT  + + Q   VH  +I++   +     + L+ + A    G L  A  VF+ + E
Sbjct: 57  LLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKC--GSLEEARKVFDKMPE 114

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V W  +I G+S    P  A+  + +M+  GF PN +T   ++K+ A       G Q+
Sbjct: 115 RDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQL 174

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H   +K G +S+  V ++L+++Y + G ++ A+LVF+    R+ VS+ ALI G+A R   
Sbjct: 175 HGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGT 234

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           + A +LF  M    E F P+  +  ++  AC+  G LE G WV + +   G        N
Sbjct: 235 EKALELFQGM--LREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGN 292

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            L+DMY+K G +  AR +F+ + KRDV+SWN ++  Y       EA+  F +M +  I P
Sbjct: 293 TLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRP 352

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N+++FLSVL AC++ G LD G W +  + K    +     + +++D+  + G++  A + 
Sbjct: 353 NEISFLSVLTACSHSGLLDEG-WHYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALRF 411

Query: 393 FDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
            + M  + T A W A+++   MH   +  L  ++      L PDD
Sbjct: 412 IEEMPIEPTAAIWKALLNACRMHKNTE--LGAYAAEHVFELDPDD 454


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/581 (41%), Positives = 370/581 (63%), Gaps = 7/581 (1%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P    +  +L  C  +  + +G+ IHAH+     E D  +   ++NMYA+ G LE A+ +
Sbjct: 103 PERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDL 162

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
           F+K   +D VS+T LI+GY+  G   +A  LF +M      F PNE T+ ++L A     
Sbjct: 163 FDKMPTKDMVSWTVLISGYSQSGQASEALALFPKM--LHLGFQPNEFTLSSLLKASGTGP 220

Query: 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG 307
           S   G  + +    +G   N+HV ++L+DMY++   + +A+ +F S+  ++V+SWN +I 
Sbjct: 221 SDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIA 280

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH-QK 366
           G+    + +  + LF QML+   EP   T+ SVL ACA  G+L+ GKW+HA++ K+  Q 
Sbjct: 281 GHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQP 339

Query: 367 LNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSR 426
           +  +    +LIDMYAK G+IK A++VF  +  + + SWN++ISG A HG   +AL LF +
Sbjct: 340 IAYIG--NTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQ 397

Query: 427 MIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAG 486
           M+   +QP++ITF+ VL+AC+H+GLLD G+ YF  M + +KI  ++ H+  +VDLLGRAG
Sbjct: 398 MLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELM-KKHKIEAQVAHHVTVVDLLGRAG 456

Query: 487 LFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSN 546
             +EA   ++ M +KP AA+W +LLGACR+H  ++LG   A+ + EL+P + G +VLLSN
Sbjct: 457 RLNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSN 516

Query: 547 MYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDE 606
           +YA AGR  D A +R  + + G+KK P CS +E+ + VH F+  D  HP  + I  M ++
Sbjct: 517 IYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEK 576

Query: 607 IDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRV 666
           I   +++ G+VPDTS VL+ M+++ +E  L +HSEKLA+A+ ++ T PG TIRI KN+R+
Sbjct: 577 ISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRI 636

Query: 667 CGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           CG+CHSA K  S++  REII RD NRFHHF  G CSC DYW
Sbjct: 637 CGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 677



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 127/387 (32%), Positives = 213/387 (55%), Gaps = 10/387 (2%)

Query: 36  LLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +L+KCT ++ +KQ   +H+ I  +   +    L+ ++ + A    G L  A  +F+ +  
Sbjct: 111 MLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKC--GSLEEAQDLFDKMPT 168

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V W  +I G+S S     A+  + +M+  GF PN +T   +LK+     +   G+Q+
Sbjct: 169 KDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQL 228

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           HA  LK G + +  V +SL++MYA+   +  A+++FN  + ++ VS+ ALI G+A +G  
Sbjct: 229 HAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEG 288

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           +   +LF +M    + F P   T  +VL ACA  GSLE G WV + +   G     ++ N
Sbjct: 289 EHVMRLFXQM--LRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQPIAYIGN 345

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            LIDMY+K G +  A+ +F  + K+D++SWN +I GY       EAL LF QML++ ++P
Sbjct: 346 TLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQP 405

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N++TFLSVL AC++ G LD G++    + K H+    V+   +++D+  + G +  A + 
Sbjct: 406 NEITFLSVLTACSHSGLLDEGQYYFELM-KKHKIEAQVAHHVTVVDLLGRAGRLNEANKF 464

Query: 393 FDGMGYK-TLASWNAMISGLAMHGKAD 418
            + M  K T A W A++    MH   D
Sbjct: 465 IEEMPIKPTAAVWGALLGACRMHKNMD 491



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 123/272 (45%), Gaps = 40/272 (14%)

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
           ++EP    +  +L  C YL  L  G+ IHA+I  +  + +++ L   +++MYAKCG+++ 
Sbjct: 100 SLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFE-DDLVLLNFILNMYAKCGSLEE 158

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A+ +FD M  K + SW  +ISG +  G+A +AL+LF +M+  G QP++ T   +L A   
Sbjct: 159 AQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGT 218

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
                 GRQ  +A    Y     +     ++D+  R     EA+ +  ++  K +   W 
Sbjct: 219 GPSDHHGRQ-LHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAK-NVVSWN 276

Query: 509 SLLG----------------------------------ACRVHGRLELGESVAKHLLELE 534
           +L+                                   AC   G LE G+ V  H+++  
Sbjct: 277 ALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVLACASSGSLEQGKWVHAHVIK-S 335

Query: 535 PENPGAYV--LLSNMYAGAGRWDDVATIRTRL 564
              P AY+   L +MYA +G   D   +  RL
Sbjct: 336 GGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRL 367


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 224/437 (51%), Positives = 301/437 (68%), Gaps = 2/437 (0%)

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N LI  +++ G +  AR LF+ + +R+ +SW+ M+ GY    D +EAL +F QM    + 
Sbjct: 163 NTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVR 222

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+D   + VL ACA LGAL+ GKW+H Y+  N+ ++  V L T+L+DMYAKCG ++   +
Sbjct: 223 PDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMT-VFLGTALVDMYAKCGEVQLGME 281

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VF+GM  K + +W  MI GLAMHG+   +L+LFS+M   G++PDDI F+G L AC H GL
Sbjct: 282 VFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGL 341

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           +D GR+ FN+M+ +Y I PK++HYGCMVDLL R GL  EA  +++ M MKPDA IW +L+
Sbjct: 342 VDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALM 401

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
             CR H  +EL E V KH +ELEP+  GAYVLL N+Y+ +GR      IR  + +KG++K
Sbjct: 402 AGCRFHKNVELAEYVIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMREKGVEK 461

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE-KSGFVPDTSEVLYDMDEE 630
            PGCS++E+  V+H+F+VGD  HP+ K I     EID+ +  + G+VPD  EVL D++EE
Sbjct: 462 TPGCSNVEIKGVIHQFIVGDLSHPRIKDILTKWYEIDSRIRLEEGYVPDKKEVLLDIEEE 521

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
             E ALS HSEKLAIA+ LIST+    IRIVKNLRVC +CH  TKLISK++ REII RDR
Sbjct: 522 EMESALSRHSEKLAIAFALISTEDYMPIRIVKNLRVCQDCHHVTKLISKVYGREIIVRDR 581

Query: 691 NRFHHFKDGNCSCNDYW 707
            RFH FKDG CSC DYW
Sbjct: 582 TRFHLFKDGTCSCKDYW 598



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/395 (28%), Positives = 196/395 (49%), Gaps = 38/395 (9%)

Query: 76  PFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPF 135
           P   +  AL+    +R   + + + +IR H+ S  P  A+  Y  +I +G  P  +T P 
Sbjct: 35  PIARIQAALVTSGLLRRSAE-LHDALIRAHASSGRPQAALPLYAHLIRAGLFPTPHTLPS 93

Query: 136 ILKSCAKISAISEGKQ----IHAHVLKLGLESDPFVHTSLINMYAQN-GELESARLVFNK 190
           +LKS A   A+   ++    +HAH ++LGL     V+ +LI ++A   G L  A L+   
Sbjct: 94  LLKSLALSPAVPGARRLALAVHAHAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRT 153

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE------------------------ 226
           S+  DA ++  LIT +A  G + DAR LFDEMP R                         
Sbjct: 154 SAAVDASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVF 213

Query: 227 -----ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC 281
                +   P+++ +V VL+ACA +G+LE G WV   ++ + +   + +  AL+DMY+KC
Sbjct: 214 SQMQAQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKC 273

Query: 282 GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
           G++    ++FE ++ ++V++W  MI G        ++L LF QM  S ++P+D+ F+  L
Sbjct: 274 GEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGAL 333

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
            AC + G +D G+ +   +  N+     +  +  ++D+ A+ G +  A  + + M  K  
Sbjct: 334 CACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPD 393

Query: 402 A-SWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           A  W A+++G   H   + A  +    I   L+PD
Sbjct: 394 ALIWGALMAGCRFHKNVELAEYVIKHWI--ELEPD 426



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 133/265 (50%), Gaps = 6/265 (2%)

Query: 71  ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNT 130
           I A +  G ++ A  +F+ + E N V W+ ++ G+  +     A+  + +M   G  P+ 
Sbjct: 166 ITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDD 225

Query: 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK 190
                +L +CA++ A+ +GK +H ++    +    F+ T+L++MYA+ GE++    VF  
Sbjct: 226 TVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEG 285

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250
              ++ +++T +I G A  G   D+  LF +M        P++   +  L AC H G ++
Sbjct: 286 MKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQM--ESSGVKPDDIAFIGALCACTHTGLVD 343

Query: 251 LGNWVC-SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGG 308
            G  +  S++  +G+   +     ++D+ ++ G L +ARD+ E +  K D + W  ++ G
Sbjct: 344 KGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAG 403

Query: 309 YTHTSDYKEALMLFRQMLQSNIEPN 333
                + + A  + +  ++  +EP+
Sbjct: 404 CRFHKNVELAEYVIKHWIE--LEPD 426



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 133/298 (44%), Gaps = 42/298 (14%)

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
           FL V  A   + A  LG+   A++        + S + +LI  +A+ G +  A  +FD M
Sbjct: 126 FLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARAGRVADARSLFDEM 185

Query: 397 GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR 456
             +   SW+AM++G    G   +AL +FS+M  +G++PDD   VGVL+AC   G L+ G+
Sbjct: 186 PERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGK 245

Query: 457 QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRV 516
            + +  ++   I   +     +VD+  + G       + + M+ K +   WT+++    +
Sbjct: 246 -WVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDK-NVLAWTTMIKGLAM 303

Query: 517 HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATI-------RTRLNDKGM 569
           HGR                    +  L S M +   + DD+A I        T L DKG 
Sbjct: 304 HGR-----------------GSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGR 346

Query: 570 KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
           +           S+V+ +     + P+ +H   M+D    LL ++G + +  +++  M
Sbjct: 347 EL--------FNSMVNNY----GIKPKIEHYGCMVD----LLARNGLLSEARDMVEKM 388


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 255/691 (36%), Positives = 402/691 (58%), Gaps = 34/691 (4%)

Query: 47  KQVHSQIIKTGL--HNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ-----VIWN 99
           ++ H+  +K G    + +FA + L+ + A    G +  A ++F ++   +      V WN
Sbjct: 183 REAHAFALKNGFLDGDERFAFNALLSMYA--RLGLVDDAQMLFGSVDTTDSPGGGVVTWN 240

Query: 100 NIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLK- 158
            ++     S     AI+    M+  G  P+  TF   L +C+++  +S G+++HA+VLK 
Sbjct: 241 TMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKD 300

Query: 159 LGLESDPFVHTSLINMYAQNGELESARLVFN--KSSLRDAVSYTALITGYASRGYLDDAR 216
             L ++ FV ++L++MYA +  +  AR VF+      R    + A++ GYA  G  ++A 
Sbjct: 301 SDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEAL 360

Query: 217 QLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALID 276
           +LF  M   E   VP+E+T+  VL ACA   +      V   +   G+  N  V NAL+D
Sbjct: 361 ELFARMEA-EAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMD 419

Query: 277 MYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN------- 329
           +Y++ GD+  AR +F +IE RDV+SWN +I G        +A  L R+M Q         
Sbjct: 420 LYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATT 479

Query: 330 -----------IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
                      + PN+VT +++LP CA L A   GK IH Y  + H   +++++ ++L+D
Sbjct: 480 EDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMR-HALDSDIAVGSALVD 538

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMI-GEGLQPDDI 437
           MYAKCG +  +  VFD +  + + +WN +I    MHG  D+A++LF RM+     +P+++
Sbjct: 539 MYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEV 598

Query: 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT 497
           TF+  L+AC+H+G++D G + F++M +++ + P    + C VD+LGRAG  DEA +++ +
Sbjct: 599 TFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITS 658

Query: 498 MEM-KPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
           ME  +   + W+S LGACR+H  + LGE  A+ L +LEP+    YVLL N+Y+ AG W+ 
Sbjct: 659 MEPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQLEPDEASHYVLLCNIYSAAGLWEK 718

Query: 557 VATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGF 616
            + +R R+  +G+ K PGCS IE+  V+H F+ G+  HP+S  ++  +D +   +   G+
Sbjct: 719 SSEVRNRMRQRGVSKEPGCSWIELDGVIHRFMAGESAHPESTLVHAHMDALWERMRNQGY 778

Query: 617 VPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKL 676
            PDTS VL+D++E  K   L +HSEKLAIA+GL+ T PG TIR+ KNLRVC +CH A K 
Sbjct: 779 TPDTSSVLHDIEESEKAAILRYHSEKLAIAFGLLRTPPGATIRVAKNLRVCNDCHEAAKF 838

Query: 677 ISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           IS++  REI+ RD  RFHHF DG CSC DYW
Sbjct: 839 ISRMVGREIVLRDVRRFHHFVDGACSCGDYW 869



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 122/404 (30%), Positives = 199/404 (49%), Gaps = 19/404 (4%)

Query: 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLES--DPFVHTSLINMYAQNGELESARLVF 188
           +  P   KS A + ++   + IH   L+  L     P V  +L+  YA+ G+L +A  +F
Sbjct: 60  FALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALALF 119

Query: 189 NKSSLRDAVSYTALITGYA-SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
           N    RDAV++ +LI      R +L     L D +    E    +  T+V+VL AC+H+ 
Sbjct: 120 NAMPSRDAVTFNSLIAALCLFRRWLPALDALRDML---LEGHPLSSFTLVSVLLACSHLA 176

Query: 248 S-LELGNWVCSLIEGHGL--GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD-----V 299
             L LG    +    +G   G      NAL+ MY++ G +  A+ LF S++  D     V
Sbjct: 177 EDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGV 236

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
           ++WN M+     +    EA+ +   M+   + P+ +TF S LPAC+ L  L LG+ +HAY
Sbjct: 237 VTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAY 296

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM--GYKTLASWNAMISGLAMHGKA 417
           + K+     N  + ++L+DMYA    +  A +VFD +  G++ L  WNAM+ G A  G  
Sbjct: 297 VLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMD 356

Query: 418 DKALSLFSRMIGE-GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG 476
           ++AL LF+RM  E G+ P + T  GVL AC  +     G++  +  +    ++       
Sbjct: 357 EEALELFARMEAEAGVVPSETTIAGVLPACARSETF-AGKEAVHGYVLKRGMADNPFVQN 415

Query: 477 CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRL 520
            ++DL  R G  + A  +   +E + D   W +L+  C V G +
Sbjct: 416 ALMDLYARLGDMEAARWIFAAIEPR-DVVSWNTLITGCVVQGHI 458


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 268/665 (40%), Positives = 410/665 (61%), Gaps = 24/665 (3%)

Query: 53  IIKTGLHNTQFALS-KLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSP 111
           + K G   T  ++   LI++ A +  GDL     VF+ + E   V+W  +I  ++ S   
Sbjct: 179 VFKLGFWGTDVSVGCALIDMFAKN--GDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYS 236

Query: 112 VVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSL 171
             A++ ++ M+ +GF P+ YT   +L +C ++ +   G+Q+H+  L+LGLESD  V   L
Sbjct: 237 DEAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGL 296

Query: 172 INMYAQ--NGE-LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ-LFDEMPIREE 227
           ++MYA+  NG+ L +AR VFN+    + +++TAL++GY  RG  D+    LF +M    E
Sbjct: 297 VDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKML--NE 354

Query: 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH----VTNALIDMYSKCGD 283
              PN  T  ++L ACA++G  + G      I  H + SNL     V NAL+ MY++ G 
Sbjct: 355 GIRPNHITYSSMLKACANLGDQDSGRQ----IHTHCVKSNLADLNVVGNALVSMYAESGS 410

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           + +AR  F+ + +++++S++  + G   ++ Y++      Q+ +  +  +  TF S++ A
Sbjct: 411 IEEARHAFDQLYEKNMVSFSGNLDGDGRSNTYQD-----YQIERMELGISTFTFGSLISA 465

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
            A +G L  G+ +HA   K     ++ ++  SL+ MY++CG +  A QVFD M    + S
Sbjct: 466 AASVGMLTKGQRLHALSLKAGFG-SDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVIS 524

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
           W +MISGLA HG A +AL LF  MI  G++P+D+T++ VLSAC+HAGL+  G+++F  M 
Sbjct: 525 WTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQ 584

Query: 464 QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELG 523
           + + + P+++HY CMVDLLGR+GL ++A   +  M  + DA +W +LLGAC+ H  +++G
Sbjct: 585 KHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIG 644

Query: 524 ESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSV 583
           E  A H+++LEP++P  YVLLSN+YA AG WD VA IR+ + DK + K  G S + V + 
Sbjct: 645 EIAANHVIQLEPQDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNT 704

Query: 584 VHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKL 643
           +HEF  GD  HPQ++ IY  L+ +   ++  G+VPDTS VL+DM +E KE  L  HSEK+
Sbjct: 705 IHEFRAGDTSHPQAEEIYTKLETLIREIKVMGYVPDTSVVLHDMSDELKELCLLQHSEKI 764

Query: 644 AIAYGLISTKPGTT-IRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCS 702
           A+A+GLIS    T  IRI KNLRVC +CHSA K +SK   REII RD NRFH  KDG CS
Sbjct: 765 AVAFGLISCTSATKPIRIFKNLRVCVDCHSALKYVSKATGREIILRDSNRFHRMKDGECS 824

Query: 703 CNDYW 707
           C +YW
Sbjct: 825 CGEYW 829



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 156/543 (28%), Positives = 249/543 (45%), Gaps = 52/543 (9%)

Query: 96  VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAIS-EGKQIHA 154
           V W  +    S + +   A++ +   +  G +PN +T     ++C         G  +  
Sbjct: 118 VSWTAMASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLG 177

Query: 155 HVLKLGL-ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
            V KLG   +D  V  +LI+M+A+NG+L + R VF+    R  V +T LIT YA  GY D
Sbjct: 178 LVFKLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSD 237

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           +A +LF +M   E  F P++ T+ ++LSAC  +GS  LG  + SL    GL S+  V+  
Sbjct: 238 EAVELFLDML--ENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCG 295

Query: 274 LIDMYSKCGD---LVKARDLFESIEKRDVISWNVMIGGYTHT-SDYKEALMLFRQMLQSN 329
           L+DMY+K  +   L  AR++F  + K +V++W  ++ GY    S   + ++LF +ML   
Sbjct: 296 LVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEG 355

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAY-IDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
           I PN +T+ S+L ACA LG  D G+ IH + +  N   LN V    +L+ MYA+ G+I+ 
Sbjct: 356 IRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVG--NALVSMYAESGSIEE 413

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A   FD +  K + S++  + G    G+++         +  G+     TF  ++SA   
Sbjct: 414 ARHAFDQLYEKNMVSFSGNLDG---DGRSNTYQDYQIERMELGIST--FTFGSLISAAAS 468

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
            G+L  G Q  +A+               +V +  R G   +A  +   M    +   WT
Sbjct: 469 VGMLTKG-QRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMN-DHNVISWT 526

Query: 509 SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568
           S++     HG        A   LE          L  +M A   + +DV  I        
Sbjct: 527 SMISGLAKHG-------YAARALE----------LFHDMIAAGVKPNDVTYIAV------ 563

Query: 569 MKKVPGCSSIE-VGSVVHEFLVGDKVH---PQSKHIYEMLDEIDALLEKSGFVPDTSEVL 624
              +  CS    V      F +  K H   P+ +H   M+D    LL +SG V D  + +
Sbjct: 564 ---LSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVD----LLGRSGLVEDALDFI 616

Query: 625 YDM 627
            +M
Sbjct: 617 NEM 619



 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 134/461 (29%), Positives = 222/461 (48%), Gaps = 50/461 (10%)

Query: 149 GKQIHAHVLKLG--LESDPFVHTSLINMYAQNGELESARLVFNK--SSLRDAVSYTALIT 204
           G+ +  H+L+ G  LE+D  V  SL+ +Y++   + +AR VF+     LRD VS+TA+ +
Sbjct: 66  GRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMAS 125

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL-GNWVCSLIEGHG 263
             +  G   +A +LF E    EE  +PN  T+     AC       L G  V  L+   G
Sbjct: 126 CLSRNGAEAEALRLFGE--TLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLG 183

Query: 264 L-GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
             G+++ V  ALIDM++K GDLV  R +F+ + +R V+ W ++I  Y  +    EA+ LF
Sbjct: 184 FWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELF 243

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
             ML++  +P+  T  S+L AC  LG+  LG+ +H+   +   + ++  +   L+DMYAK
Sbjct: 244 LDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLE-SDSCVSCGLVDMYAK 302

Query: 383 CGN---IKAAEQVFDGMGYKTLASWNAMISGLAMHGKAD-KALSLFSRMIGEGLQPDDIT 438
             N   +  A +VF+ M    + +W A++SG    G  D + + LF +M+ EG++P+ IT
Sbjct: 303 SHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHIT 362

Query: 439 FVGVLSACNHAGLLDIGRQYF---------------NAMIQDYKISPKLQHYGCMVDLL- 482
           +  +L AC + G  D GRQ                 NA++  Y  S  ++      D L 
Sbjct: 363 YSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLY 422

Query: 483 --------------GRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
                         GR+  + + +  ++ ME+      + SL+ A    G L  G+ +  
Sbjct: 423 EKNMVSFSGNLDGDGRSNTYQDYQ--IERMELGISTFTFGSLISAAASVGMLTKGQRL-- 478

Query: 529 HLLELEPENPGAYVL---LSNMYAGAGRWDDVATIRTRLND 566
           H L L+        +   L +MY+  G   D   +   +ND
Sbjct: 479 HALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMND 519



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 98/239 (41%), Gaps = 39/239 (16%)

Query: 350 LDLGKWIHAYIDKNHQKL-NNVSLWTSLIDMYAKCGNIKAAEQVFDGM--GYKTLASWNA 406
           + LG+ +  ++ +    L  +  +  SL+ +Y+KC  + AA  VFDGM  G + L SW A
Sbjct: 63  IHLGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTA 122

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
           M S L+ +G   +AL LF   + EGL P+  T      AC  + L  +       ++   
Sbjct: 123 MASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKL 182

Query: 467 KISPKLQHYGC-MVDLLGRA-----------GLF--------------------DEA-EA 493
                    GC ++D+  +            GLF                    DEA E 
Sbjct: 183 GFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVEL 242

Query: 494 LLKTME--MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVL-LSNMYA 549
            L  +E   +PD    +S+L AC   G   LG+ +    L L  E+       L +MYA
Sbjct: 243 FLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYA 301


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 247/677 (36%), Positives = 397/677 (58%), Gaps = 12/677 (1%)

Query: 35  ALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ++L  C ++  +K+   VH  I K G+       + L+ +     F  L  A  VF  + 
Sbjct: 227 SVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSM--YFKFERLREARRVFSKMA 284

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             + V WN +I G++       ++K ++ MI  GFVP+  +    +++C +   +  GK 
Sbjct: 285 VKDSVTWNTMICGYAQLGRHEASVKLFMDMI-DGFVPDMLSITSTIRACGQSGDLQVGKF 343

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +H +++  G E D      LI+MYA+ G+L +A+ VF+ +  +D+V++ +LI GY   GY
Sbjct: 344 VHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGY 403

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV-CSLIEGHGLGSNLHV 270
             +  + F  M +  +   P+  T V +LS  + +  +  G  + C +I+  G  + L +
Sbjct: 404 YKEGLESFKMMKMERK---PDSVTFVLLLSIFSQLADINQGRGIHCDVIK-FGFEAELII 459

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            N+L+D+Y+KCG++     +F  +   D+ISWN +I    H  D      +  +M    +
Sbjct: 460 GNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGL 519

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
            P++ T L +LP C+ L     GK IH YI K+  + +NV +  +LI+MY+KCG+++   
Sbjct: 520 MPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFE-SNVPIGNALIEMYSKCGSLENCI 578

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           +VF  M  K + +W A+IS   M+G+  KAL  F  M   G+ PD + F+  + AC+H+G
Sbjct: 579 KVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSG 638

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           ++  G ++F+ M  DY + P+++HY C+VDLL R+GL  +AE  + +M MKPDA++W +L
Sbjct: 639 MVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGAL 698

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           L ACR  G   + + V+K +LEL  ++ G YVL+SN+YA  G+WD V T+R  +  KG+K
Sbjct: 699 LSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLK 758

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           K PG S IE+   V+ F  GDK   Q   + ++L+ +  L+ K G+V D    L+D++E+
Sbjct: 759 KEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEED 818

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            K   L  HSE+LAIA+GL++TKPG+ + ++KNLRVCG+CH+ TK I+KI  REI+ RD 
Sbjct: 819 DKRDMLCGHSERLAIAFGLLNTKPGSPLLVMKNLRVCGDCHTVTKYITKIMQREILVRDA 878

Query: 691 NRFHHFKDGNCSCNDYW 707
           NRFH FKDG CSC D+W
Sbjct: 879 NRFHRFKDGACSCGDHW 895



 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 155/503 (30%), Positives = 269/503 (53%), Gaps = 12/503 (2%)

Query: 16  HFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVS 75
           +F  + +P  + L++   L  LS   N   ++ VHS II +GL  +     KLI     +
Sbjct: 9   NFNNTPEPSQEFLRSSL-LKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLIS--KYA 65

Query: 76  PFGDLSYALLVFETIREPNQV-IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFP 134
              D   ++ VF +I   N V +WN+IIR  + +     A+ +Y  M      P+ +TFP
Sbjct: 66  QVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFP 125

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
            ++ SCA+I  +  G  +H H +++G ESD ++  +LI+MY++  +L++AR VF + S R
Sbjct: 126 SVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNR 185

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
           D+VS+ +LI+GY S G+ +DA  ++ +   R    VP+  T+ +VL AC  + +++ G  
Sbjct: 186 DSVSWNSLISGYCSNGFWEDALDMYHK--FRMTGMVPDCFTMSSVLLACGSLMAVKEGVA 243

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           V  +IE  G+  ++ + N L+ MY K   L +AR +F  +  +D ++WN MI GY     
Sbjct: 244 VHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGR 303

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
           ++ ++ LF  M+   + P+ ++  S + AC   G L +GK++H Y+  +  + + V+   
Sbjct: 304 HEASVKLFMDMIDGFV-PDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVAC-N 361

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
            LIDMYAKCG++ AA++VFD    K   +WN++I+G    G   + L  F  M  E  +P
Sbjct: 362 ILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKME-RKP 420

Query: 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494
           D +TFV +LS  +    ++ GR     +I+ +    +L     ++D+  + G  D+   +
Sbjct: 421 DSVTFVLLLSIFSQLADINQGRGIHCDVIK-FGFEAELIIGNSLLDVYAKCGEMDDLLKV 479

Query: 495 LKTMEMKPDAAIWTSLLGACRVH 517
              M    D   W +++ A  VH
Sbjct: 480 FSYMSAH-DIISWNTVI-ASSVH 500


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 261/575 (45%), Positives = 363/575 (63%), Gaps = 8/575 (1%)

Query: 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL 193
           P ++K+C  +    +GK+IH  VLKLG E D FV  SL++MY++ G +  AR +F+    
Sbjct: 1   PPVVKACGDLL---DGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPA 57

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
           RD  S+ A+I+GY   G   +A  + DEM  R E    +  TV +VL  CA +G +  G 
Sbjct: 58  RDRGSWNAMISGYCQNGNAAEALDIADEM--RLEGVKMDAITVASVLPVCAQVGDILSGK 115

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTS 313
            +   +  HGL   L V+NALI+MY+K G L  A+ +F  + K DV+SWN +I GY    
Sbjct: 116 LIHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLIK-DVVSWNTLITGYAQNG 174

Query: 314 DYKEALMLFRQMLQ-SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
              EA+ ++  M +   I PN  T++S+LPA +++GAL  G  IH  + KN    ++V +
Sbjct: 175 LASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCL-YSDVFV 233

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
            T LIDMY KCG +  A  +F  +  K    WNAMIS   +HG  +KAL LF  M  E +
Sbjct: 234 GTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERV 293

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
           +PD ITFV +LSAC+H+GL+   +  FN M ++Y I P L+HYGCMVDL GRAG  + A 
Sbjct: 294 KPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAF 353

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552
             +K M ++PDA+ W +LL ACR+HG +ELG+  ++ L E++ EN G YVLLSN+YA  G
Sbjct: 354 NFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVG 413

Query: 553 RWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE 612
           +W+ V  +R+   D+G++K PG SSI + + V  F  G++ HP+ + IY  L ++ + ++
Sbjct: 414 KWEGVDDVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIK 473

Query: 613 KSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHS 672
             G+VPD   VL D++E+ KE  L  HSE+LAIAYG+IST P T IRI KNLRVCG+CH+
Sbjct: 474 TIGYVPDFCFVLQDVEEDEKEHILMGHSERLAIAYGIISTSPKTPIRIFKNLRVCGDCHT 533

Query: 673 ATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            TK IS I  REII RD +RFHHFK G CSC DYW
Sbjct: 534 VTKFISIITEREIIVRDSSRFHHFKGGTCSCGDYW 568



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 117/384 (30%), Positives = 208/384 (54%), Gaps = 5/384 (1%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ 95
           ++  C ++ + K++H  ++K G     F  + L+ +   S FG +  A  +F+ +   ++
Sbjct: 3   VVKACGDLLDGKKIHCLVLKLGFEWDVFVAASLVHM--YSRFGLVGDARKLFDDMPARDR 60

Query: 96  VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAH 155
             WN +I G+  + +   A+     M L G   +  T   +L  CA++  I  GK IH +
Sbjct: 61  GSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLY 120

Query: 156 VLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDA 215
           V+K GLE + FV  +LINMYA+ G L  A+ VF    ++D VS+  LITGYA  G   +A
Sbjct: 121 VIKHGLEFELFVSNALINMYAKFGSLGHAQKVFG-LLIKDVVSWNTLITGYAQNGLASEA 179

Query: 216 RQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALI 275
            +++  M   EE  +PN+ T V++L A +H+G+L+ G  +   +  + L S++ V   LI
Sbjct: 180 IEVYLLMEEHEE-IIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLI 238

Query: 276 DMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV 335
           DMY KCG L  A  LF  + +++ + WN MI  Y    D ++AL LFR+M    ++P+ +
Sbjct: 239 DMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHI 298

Query: 336 TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
           TF+S+L AC++ G +   +W    +++ +    ++  +  ++D++ + G ++ A      
Sbjct: 299 TFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKK 358

Query: 396 MGYKTLAS-WNAMISGLAMHGKAD 418
           M  +  AS W A+++   +HG  +
Sbjct: 359 MPIQPDASAWGALLNACRIHGNIE 382


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 260/606 (42%), Positives = 377/606 (62%), Gaps = 41/606 (6%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYA--QNGELESARLVFNKSSL 193
           +L+ C   S + E +QIH  +LK GL  D    + L+   A   +G L  AR VF++   
Sbjct: 24  LLQRC---SNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVP-NESTVVTVLSACAHMGSLELG 252
            +   +  +I GY++    ++A  L+  M       VP N  T   +L AC+ M + E  
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHS---VPHNAYTFPFLLKACSSMSASEET 137

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
             + + I   G GS ++ TN+L+++YSK GD+  AR LF+ +++RD +SWN MI GYT  
Sbjct: 138 QQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKC 197

Query: 313 SDY-------------------------------KEALMLFRQMLQSNIEPNDVTFLSVL 341
            +                                KEAL LF +M  + I+ ++V  +S L
Sbjct: 198 GEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTL 257

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
            ACA LG LD GKWIHAYI K+  +++ + L   LIDMYAKCG+++ A +VF  M  K +
Sbjct: 258 QACADLGVLDQGKWIHAYIKKHEIEIDPI-LGCVLIDMYAKCGDLEEAIEVFRKMEEKGV 316

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
           + W AMISG A+HG+  +AL  F +M   G++P+ +TF G+L+AC+HAGL+   +  F +
Sbjct: 317 SVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFES 376

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
           M + +   P ++HYGCMVDLLGRAGL  EAE L++ M +KP+AAIW +LL AC +HG LE
Sbjct: 377 MERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLE 436

Query: 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
           LG+ + K L++++P + G Y+ L++++A AG W+  A +R ++ ++G+ K+PGCS I V 
Sbjct: 437 LGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVN 496

Query: 582 SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
              HEFL GD+ HPQ K I  ML++I   L + G+ P   ++L D++++ KE A+ HHSE
Sbjct: 497 GTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSE 556

Query: 642 KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
           KLA+ +GLISTKPG TIRIVKNLRVC +CH+  KLISK++ REI+ RDR RFH FKDGNC
Sbjct: 557 KLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNC 616

Query: 702 SCNDYW 707
           +C DYW
Sbjct: 617 TCGDYW 622



 Score =  271 bits (694), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 142/415 (34%), Positives = 237/415 (57%), Gaps = 34/415 (8%)

Query: 33  SLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +L LL +C+NM+ ++Q+H Q++KTGL   +   SKL+  CA    G L+YA  VF+ I  
Sbjct: 21  TLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
           PN  +WN +IRG+S S  P  A+  Y  M+      N YTFPF+LK+C+ +SA  E +QI
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQI 140

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           HAH++K+G  S+ +   SL+N+Y+++G+++SARL+F++   RD VS+ ++I GY   G +
Sbjct: 141 HAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEI 200

Query: 213 DDARQLFDEMPIREENFV--------------PNES-----------------TVVTVLS 241
           + A ++F+ MP  E N +              P E+                  +V+ L 
Sbjct: 201 EMAYEIFNHMP--ERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQ 258

Query: 242 ACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVIS 301
           ACA +G L+ G W+ + I+ H +  +  +   LIDMY+KCGDL +A ++F  +E++ V  
Sbjct: 259 ACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSV 318

Query: 302 WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361
           W  MI GY      +EAL  F +M  + +EPN +TF  +L AC++ G +   K +   ++
Sbjct: 319 WTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESME 378

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHG 415
           + H    ++  +  ++D+  + G +K AE++ + M  K  A+ W A+++   +HG
Sbjct: 379 RIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHG 433


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  490 bits (1262), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 260/678 (38%), Positives = 401/678 (59%), Gaps = 9/678 (1%)

Query: 34  LALLSKCTNMQ---NIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           + LLS C   +    I QV +QIIK G  +     + L++    S   DL+  L  F+ +
Sbjct: 153 VTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQL--FKEM 210

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            E + V +N +I G+S       A+  +V M  SG  P  +TF  +L +   +  I  G+
Sbjct: 211 PEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQ 270

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           QIH+ V+K     + FV  +L++ Y+++  +  AR +F++   +D VSY  +I+GYA  G
Sbjct: 271 QIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDG 330

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
               A  LF E+      F   +    T+LS  ++    E+G  + +        S + V
Sbjct: 331 KHKYAFDLFRELQFTA--FDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILV 388

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            N+L+DMY+KCG   +A  +F ++  R  + W  MI  Y     Y+E L LF +M Q+++
Sbjct: 389 GNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASV 448

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
             +  TF S+L A A + +L LGK +H++I K+   ++NV   ++L+D+YAKCG+IK A 
Sbjct: 449 IADQATFASLLRASASIASLSLGKQLHSFIIKSG-FMSNVFSGSALLDVYAKCGSIKDAV 507

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           Q F  M  + + SWNAMIS  A +G+A+  L  F  M+  GLQPD ++F+GVLSAC+H+G
Sbjct: 508 QTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSG 567

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L++ G  +FN+M Q YK+ P+ +HY  +VD+L R+G F+EAE L+  M + PD  +W+S+
Sbjct: 568 LVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSV 627

Query: 511 LGACRVHGRLELGESVAKHLLELEP-ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
           L ACR+H   EL    A  L  +E   +   YV +SN+YA AG+W++V+ +   + D+G+
Sbjct: 628 LNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGV 687

Query: 570 KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE 629
           KK+P  S +E+    H F   D+ HPQ + I + +D +   +E+ G+ PDTS  L++ DE
Sbjct: 688 KKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDE 747

Query: 630 EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
           ++K  +L +HSE+LAIA+ LIST  G+ I ++KNLR C +CH+A K+ISKI  REI  RD
Sbjct: 748 KFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRD 807

Query: 690 RNRFHHFKDGNCSCNDYW 707
             RFHHF+DG CSC D+W
Sbjct: 808 STRFHHFRDGFCSCGDFW 825



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 128/446 (28%), Positives = 220/446 (49%), Gaps = 9/446 (2%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G+L  A  +F+ + E   V W  +I G+S  +    A + +V+M   G  P+  TF  +L
Sbjct: 97  GNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLL 156

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
             C      ++  Q+   ++KLG +S   V  +L++ Y ++  L+ A  +F +    D+V
Sbjct: 157 SGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSV 216

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           SY A+ITGY+  G  + A  LF EM  +     P E T   VL A   +  + LG  + S
Sbjct: 217 SYNAMITGYSKDGLDEKAVNLFVEM--QNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHS 274

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
            +       N+ V+NAL+D YSK   ++ AR LF+ + ++D +S+NV+I GY     +K 
Sbjct: 275 FVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKY 334

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           A  LFR++  +  +     F ++L   +     ++G+ IHA         + + +  SL+
Sbjct: 335 AFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTAD-SEILVGNSLV 393

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI 437
           DMYAKCG  + AE +F  + +++   W AMIS     G  ++ L LF++M    +  D  
Sbjct: 394 DMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQA 453

Query: 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT 497
           TF  +L A      L +G+Q  + +I+   +S        ++D+  + G   +A   ++T
Sbjct: 454 TFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSG-SALLDVYAKCGSIKDA---VQT 509

Query: 498 MEMKPDAAI--WTSLLGACRVHGRLE 521
            +  PD  I  W +++ A   +G  E
Sbjct: 510 FQEMPDRNIVSWNAMISAYAQNGEAE 535



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 124/406 (30%), Positives = 191/406 (47%), Gaps = 42/406 (10%)

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           I A ++K G + D       +  + +NGEL  AR +F K   ++ VS   +I+GY   G 
Sbjct: 39  IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 98

Query: 212 LDDARQLFDEMPIRE---------------------ENFV--------PNESTVVTVLSA 242
           L +AR+LFD M  R                      E FV        P+  T VT+LS 
Sbjct: 99  LGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSG 158

Query: 243 CAHMGSLELGNWVCSL---IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV 299
           C      E+GN +  +   I   G  S L V N L+D Y K   L  A  LF+ + + D 
Sbjct: 159 C---NGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDS 215

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALD--LGKWIH 357
           +S+N MI GY+     ++A+ LF +M  S ++P + TF +VL  CA +G  D  LG+ IH
Sbjct: 216 VSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGLDDIVLGQQIH 273

Query: 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA 417
           +++ K +  + NV +  +L+D Y+K  ++  A ++FD M  +   S+N +ISG A  GK 
Sbjct: 274 SFVIKTN-FVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKH 332

Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
             A  LF  +           F  +LS  ++    ++GRQ     I     S  L     
Sbjct: 333 KYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVG-NS 391

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELG 523
           +VD+  + G F+EAE +   +  +  A  WT+++ A    G  E G
Sbjct: 392 LVDMYAKCGKFEEAEMIFTNLTHRS-AVPWTAMISAYVQKGFYEEG 436



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 118/252 (46%), Gaps = 42/252 (16%)

Query: 249 LELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE------------- 295
           L + N + + I   G   +   +N  +  + K G+L +AR LFE +              
Sbjct: 33  LNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISG 92

Query: 296 ------------------KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTF 337
                             +R  ++W ++IGGY+  + +KEA  LF QM +   EP+ VTF
Sbjct: 93  YVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTF 152

Query: 338 LSVLPACAYLGALDLGKWIHAYIDKNHQKL---NNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           +++L  C      ++G  I   +     KL   + + +  +L+D Y K   +  A Q+F 
Sbjct: 153 VTLLSGC---NGHEMGNQI-TQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFK 208

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
            M      S+NAMI+G +  G  +KA++LF  M   GL+P + TF  VL  C + GL DI
Sbjct: 209 EMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGLDDI 266

Query: 455 --GRQYFNAMIQ 464
             G+Q  + +I+
Sbjct: 267 VLGQQIHSFVIK 278


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 252/620 (40%), Positives = 373/620 (60%), Gaps = 19/620 (3%)

Query: 4   PPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQF 63
           PP   + S  I +  P   PP++LL+ +  ++LL  C   + + Q+ +QII  G    ++
Sbjct: 15  PPGGKSCSTEIDYLAPK--PPHRLLEER-FISLLQSCKTSKQVHQIQAQIIANGFQYNEY 71

Query: 64  ALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMIL 123
              KL+ ICA      ++YA  +F+ I +PN  +WN++ RG++ S S    +  + +M  
Sbjct: 72  ITPKLVTICAT--LKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKG 129

Query: 124 SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELES 183
               PN +TFP +LKSC KI+A+ EG+Q+H  ++K G   +PFV T+LI+MY+  G +  
Sbjct: 130 MDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGD 189

Query: 184 ARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC 243
           A  +F +   R+ V++T++I GY     L  AR+LFD  P R+            VL   
Sbjct: 190 AYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERD-----------VVLWNI 238

Query: 244 AHMGSLELGNWVCSLIEGHGL-GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
              G +E G+ V +    H +   ++   N ++  Y+  G++     LFE + +R++ SW
Sbjct: 239 MVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSW 298

Query: 303 NVMIGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361
           N +IGGY H   + E L  F++ML +S++ PND T ++VL ACA LGALDLGKW+H Y +
Sbjct: 299 NALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAE 358

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421
            +  K  NV +  +L+DMYAKCG I+ A  VF GM  K L SWN +I GLAMH +   AL
Sbjct: 359 SSGLK-GNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADAL 417

Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481
           +LF +M   G +PD ITF+G+L AC H GL++ G  YF +M  DY I P+++HYGCMVD+
Sbjct: 418 NLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDM 477

Query: 482 LGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541
           L RAG  ++A A ++ M ++ D  IW  LLGACR++  +EL E   + L+ELEP+NP  Y
Sbjct: 478 LARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANY 537

Query: 542 VLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIY 601
           V+LSN+Y  AGRW+DVA ++  + D G KK+PGCS IEV   V EF   D+ HPQ + IY
Sbjct: 538 VMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEIY 597

Query: 602 EMLDEIDALLEKSGFVPDTS 621
            +L  +  +L   G+VPD +
Sbjct: 598 GVLRGLVKVLRSFGYVPDLT 617


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 252/626 (40%), Positives = 374/626 (59%), Gaps = 3/626 (0%)

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           AL VF  I+  N   W  ++   + +        F+  M+L G  P        L +C  
Sbjct: 29  ALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQGINPGEVGISIFLSACTD 88

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
              I+ G+ I   +L  G+E +  V T+L+++Y + G    A  VF + S RD V+++A+
Sbjct: 89  AREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAASVFLRMSHRDVVAWSAM 148

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
           +  YA  G+  +A  LF +M +  +   PN+ T+V+ L ACA +G L  G  +   +E  
Sbjct: 149 VAAYARNGHPREALGLFRQMDL--DGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQ 206

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
           G+ S + V  AL+++Y KCG +  A + F  I +++V++W+ +   Y      ++A+ + 
Sbjct: 207 GIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVL 266

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL-NNVSLWTSLIDMYA 381
            +M    + PN  TF+SVL ACA + AL  G+ IH  I      L ++V + T+L++MY+
Sbjct: 267 HRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVLTALVNMYS 326

Query: 382 KCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVG 441
           KCGN+  A  +FD + +  L  WN++I+  A HG+ +KAL LF RM  EGLQP  ITF  
Sbjct: 327 KCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTS 386

Query: 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK 501
           VL AC+HAG+LD GR++F + I D+ I P+ +H+GCMVDLLGRAG   ++E LL  M  +
Sbjct: 387 VLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFE 446

Query: 502 PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIR 561
           P    W + LGACR +  ++     A++L +L+P     YVLLSNMYA AGRW DVA +R
Sbjct: 447 PHPVAWMAFLGACRTYRNMDGAIWAAENLFQLDPRKRAPYVLLSNMYAKAGRWSDVARMR 506

Query: 562 TRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTS 621
             +      K  G S IEV   VHEF+ GD  HP+   I+  L  +  L++ +G+VPDT 
Sbjct: 507 QAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTKLMKAAGYVPDTE 566

Query: 622 EVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIF 681
            VL+D+ +E KE  + +HSEKLA+A+ L++T  G+ IR+VKNLRVC +CH+A+K ISK+ 
Sbjct: 567 MVLHDVKQEVKETMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRVCNDCHTASKFISKLV 626

Query: 682 NREIIARDRNRFHHFKDGNCSCNDYW 707
           NREI+ RD NRFH F++G CSC DYW
Sbjct: 627 NREIVVRDCNRFHRFQNGACSCGDYW 652



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 192/392 (48%), Gaps = 10/392 (2%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
            LS CT+ + I   + +   I+ TG+       + L+ +      G  + A  VF  +  
Sbjct: 82  FLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSL--YGKLGHCTDAASVFLRMSH 139

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V W+ ++  ++ +  P  A+  + +M L G  PN  T    L +CA +  +  G  +
Sbjct: 140 RDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALM 199

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H  V   G++S   V T+L+N+Y + G +E+A   F +   ++ V+++A+   YA     
Sbjct: 200 HQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYARNDRN 259

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE--GHGLGSNLHV 270
            DA ++   M +  E   PN +T V+VL ACA + +L+ G  +   I   G GL S+++V
Sbjct: 260 RDAIRVLHRMDL--EGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYV 317

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
             AL++MYSKCG+L  A ++F+ I   D++ WN +I         ++AL LF +M    +
Sbjct: 318 LTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGL 377

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           +P  +TF SVL AC++ G LD G+        +H        +  ++D+  + G I  +E
Sbjct: 378 QPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSE 437

Query: 391 QVFDGMGYKTL-ASWNAMISGLAMHGKADKAL 421
            +   M ++    +W A +     +   D A+
Sbjct: 438 DLLLHMPFEPHPVAWMAFLGACRTYRNMDGAI 469



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 129/482 (26%), Positives = 216/482 (44%), Gaps = 47/482 (9%)

Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ 217
           +LG   + F+   LI++Y +    + A  VF+    ++  S+T ++  +A     D    
Sbjct: 3   ELGWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWL 62

Query: 218 LFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDM 277
            F  M ++  N  P E  +   LSAC     + +G  +   I G G+     V  AL+ +
Sbjct: 63  FFRGMLLQGIN--PGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSL 120

Query: 278 YSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTF 337
           Y K G    A  +F  +  RDV++W+ M+  Y      +EAL LFRQM    + PN VT 
Sbjct: 121 YGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTL 180

Query: 338 LSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG 397
           +S L ACA LG L  G  +H  ++    + + V + T+L+++Y KCG I+AA + F  + 
Sbjct: 181 VSGLDACASLGDLRSGALMHQRVEAQGIQ-SGVVVGTALVNLYGKCGRIEAAAEAFGQIV 239

Query: 398 YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
            K + +W+A+ +  A + +   A+ +  RM  EGL P+  TFV VL AC     L  GR+
Sbjct: 240 EKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRR 299

Query: 458 YF-------NAMIQD-YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
                      +  D Y ++  +  Y    +L     +FD+   L        D  +W S
Sbjct: 300 IHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHL--------DLVLWNS 351

Query: 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
           L+     HG+ E    + +  + LE   P      S ++A +            + D+G 
Sbjct: 352 LIATNAQHGQTEKALELFER-MRLEGLQPTIITFTSVLFACS---------HAGMLDQGR 401

Query: 570 KKVPGCSSIEVGSVVHEFLVGDK-VHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
           K                  +GD  + P+++H   M+D    LL ++G++ D+ ++L  M 
Sbjct: 402 KHFVS-------------FIGDHGIFPEAEHFGCMVD----LLGRAGWIVDSEDLLLHMP 444

Query: 629 EE 630
            E
Sbjct: 445 FE 446



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 139/346 (40%), Gaps = 31/346 (8%)

Query: 367 LNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSR 426
           + N  L   LID+Y KC     A  VF G+  K + SW  M++  A +   D+    F  
Sbjct: 7   IRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRG 66

Query: 427 MIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAG 486
           M+ +G+ P ++     LSAC  A  + IGR      I    I  +      +V L G+ G
Sbjct: 67  MLLQGINPGEVGISIFLSACTDAREITIGRS-IQLAILGTGIEEESIVQTALVSLYGKLG 125

Query: 487 LFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSN 546
              +A ++   M  + D   W++++ A   +G       + +  ++L+   P    L+S 
Sbjct: 126 HCTDAASVFLRMSHR-DVVAWSAMVAAYARNGHPREALGLFRQ-MDLDGVAPNKVTLVSG 183

Query: 547 MYAGA--GRWDDVATIRTRLNDKGMKK--VPG---------CSSIEV-----GSVVHEFL 588
           + A A  G     A +  R+  +G++   V G         C  IE      G +V + +
Sbjct: 184 LDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNV 243

Query: 589 VG-DKVHPQSKHIYEMLDEIDAL--LEKSGFVPDTSEVLYDMD-----EEWKEGALSHHS 640
           V    +           D I  L  ++  G  P+++  +  +D        K+G   H  
Sbjct: 244 VAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIH-- 301

Query: 641 EKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREII 686
           E++ +  G + +       +V     CGN   A  +  KI + +++
Sbjct: 302 ERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLV 347


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 264/660 (40%), Positives = 398/660 (60%), Gaps = 7/660 (1%)

Query: 53  IIKTGLHNTQFALS-KLIEICAVS-PFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSS 110
           ++KTG  ++   +  +LI++        DL  A  VF+ +RE N V W  +I   +    
Sbjct: 182 VLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGY 241

Query: 111 PVVAIKFYVRMILS-GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHT 169
              AI  ++ M++S G+VP+ +T   ++  CA+I  +S GK++H+ V++ GL  D  V  
Sbjct: 242 NDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGC 301

Query: 170 SLINMYAQNGELESARLVFNKSSLRDAVSYTALITGY--ASRGYLDDARQLFDEMPIREE 227
           SL++MYA+ G ++ AR VF+     + +S+TAL+ GY     GY  +A ++F  M + + 
Sbjct: 302 SLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLL-QG 360

Query: 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA 287
              PN  T   VL ACA +   + G  V       GL +   V N L+ +Y+K G +  A
Sbjct: 361 GVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESA 420

Query: 288 RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347
           R  F+ + +++++S  V+        +      L R++       +  T+ S+L   A +
Sbjct: 421 RKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACI 480

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
           G +  G+ IHA + K   +  ++S+  +LI MY+KCGN +AA QVF+ M    + +W ++
Sbjct: 481 GTIGKGEQIHAMVVKIGFR-TDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSI 539

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           I+G A HG A KAL LF  M+  G++P+D+T++ VLSAC+H GL+D   ++F +M  ++ 
Sbjct: 540 INGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHG 599

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
           I P+++HY CMVDLLGR+GL  EA   + +M    DA +W + LG+CRVH   +LGE  A
Sbjct: 600 IVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAA 659

Query: 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF 587
           K +LE EP +P  Y+LLSN+YA  GRW+DVA IR  +  K + K  G S IEV + VH+F
Sbjct: 660 KMILEREPHDPATYILLSNLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHKF 719

Query: 588 LVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAY 647
            VGD +HP+++ IYE LDE+   ++  G+VP+T  VL+D+++E KE  L  HSEKLA+A+
Sbjct: 720 HVGDTLHPKAQQIYEKLDELALKIKNVGYVPNTDFVLHDVEDEQKEQYLFQHSEKLAVAF 779

Query: 648 GLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            LIST     IR+ KNLRVCG+CH+A K IS +  REI+ RD NRFHH KDG CSCNDYW
Sbjct: 780 ALISTPNPKPIRVFKNLRVCGDCHTAIKYISMVSGREIVVRDANRFHHMKDGTCSCNDYW 839



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 140/501 (27%), Positives = 243/501 (48%), Gaps = 29/501 (5%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LL +C   +N    K +H ++  + L      L+ LI +   S   D   A  +F+++  
Sbjct: 58  LLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITL--YSKSNDPITAFSIFQSMEN 115

Query: 93  PNQ--VIWNNIIRGHSLSSSPVVAIKFYVRMILS-GFVPNTYTFPFILKSCAKISAISEG 149
             +  V +++II   + + + + A++ + +++L  G  PN Y F  ++++C K      G
Sbjct: 116 SKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTG 175

Query: 150 KQIHAHVLKLG-LESDPFVHTSLINMYAQN---GELESARLVFNKSSLRDAVSYTALITG 205
             +   VLK G  +S   V   LI+M+ +     +LESAR VF+K   ++ V++T +IT 
Sbjct: 176 LCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITR 235

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
            A  GY D+A  LF EM +    +VP+  T+  ++S CA +  L LG  + S +   GL 
Sbjct: 236 LAQYGYNDEAIDLFLEMLV-SSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLV 294

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD--YKEALMLFR 323
            +L V  +L+DMY+KCG + +AR +F+ + + +V+SW  ++ GY        +EA+ +F 
Sbjct: 295 LDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFS 354

Query: 324 QM-LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS-LWTSLIDMYA 381
            M LQ  + PN  TF  VL ACA L   D G+ +H    K    L+ +  +   L+ +YA
Sbjct: 355 NMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIK--LGLSAIDCVGNGLVSVYA 412

Query: 382 KCGNIKAAEQVFDGMGYKTLASWNAM----ISGLAMHGKADKALSLFSRMIGEGLQPDDI 437
           K G +++A + FD +  K L S   +    +    ++ + D  L      +G G+     
Sbjct: 413 KSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQD--LDREVEYVGSGVSS--F 468

Query: 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT 497
           T+  +LS     G +  G Q  +AM+        L     ++ +  + G  + A  +   
Sbjct: 469 TYASLLSGAACIGTIGKGEQ-IHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFND 527

Query: 498 MEMKPDAAIWTSLLGACRVHG 518
           ME   +   WTS++     HG
Sbjct: 528 ME-DCNVITWTSIINGFAKHG 547



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 105/343 (30%), Positives = 179/343 (52%), Gaps = 12/343 (3%)

Query: 132 TFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN-- 189
           T   +LK C +      GK +H  +    L  D  +  SLI +Y+++ +  +A  +F   
Sbjct: 54  TSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSM 113

Query: 190 KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL 249
           ++S RD VSY+++I+ +A+      A ++FD++ + ++   PNE     V+ AC   G  
Sbjct: 114 ENSKRDVVSYSSIISCFANNRNCLKAVEMFDQL-LLQDGVYPNEYCFTAVIRACLKGGFF 172

Query: 250 ELGNWVCSLIEGHG-LGSNLHVTNALIDMYSK---CGDLVKARDLFESIEKRDVISWNVM 305
           + G  +   +   G   S++ V   LIDM+ K     DL  AR +F+ + +++V++W +M
Sbjct: 173 KTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLM 232

Query: 306 IGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           I          EA+ LF +ML  S   P+  T   ++  CA +  L LGK +H+++ ++ 
Sbjct: 233 ITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSG 292

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA--DKALS 422
             L ++ +  SL+DMYAKCG ++ A +VFDGM    + SW A+++G    G     +A+ 
Sbjct: 293 LVL-DLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMR 351

Query: 423 LFSRMIGE-GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
           +FS M+ + G+ P+  TF GVL AC      D G Q     I+
Sbjct: 352 MFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIK 394


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 255/679 (37%), Positives = 406/679 (59%), Gaps = 16/679 (2%)

Query: 34   LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
            +A+L+ C+N + +   +++HS I+       + +++ ++ +      G +S A LVF+ +
Sbjct: 441  IAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATML-VSMYGKCGSISEAELVFKEM 499

Query: 91   REPNQ--VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE 148
              P++  V WN ++  ++ +     A    + M+  G +P+  +F  +L SC       E
Sbjct: 500  PLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSC---YCSQE 556

Query: 149  GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
             + +   +L+ G  S   + T+LI+M+ +  ELE AR VFN+    D VS+TA+++  A 
Sbjct: 557  AQVLRMCILESGYRS-ACLETALISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAE 615

Query: 209  RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
                 +   LF  M +  E  +P++ T+ T L  C    +L LG  + + +   GL +++
Sbjct: 616  NRDFKEVHNLFRRMQL--EGVIPDKFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADI 673

Query: 269  HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
             V NAL++MYS CGD  +A   FE+++ RD++SWN+M   Y      KEA++LFRQM   
Sbjct: 674  AVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLE 733

Query: 329  NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
             ++P+ +TF + L        +  GK  HA   ++    ++VS+ T L+ +YAKCG +  
Sbjct: 734  GVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLD-SDVSVATGLVKLYAKCGKLDE 792

Query: 389  AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
            A  +F G    T+   NA+I  LA HG +++A+ +F +M  EG++PD  T V ++SAC H
Sbjct: 793  AMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGH 852

Query: 449  AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
            AG+++ G   F  M + + ISP L+HY C VDLLGRAG  + AE +++ M  + +  +WT
Sbjct: 853  AGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWT 912

Query: 509  SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568
            SLLG C++ G  ELGE  A+ +LEL+P N  A+V+LSN+Y   G+W D    R ++ D+ 
Sbjct: 913  SLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATGKWKDADVDRKKMLDEN 972

Query: 569  MKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
            +K  PG S  E+G  VHEF+ GD+ HP++  IY +LD+++ L+ ++G+  D      D++
Sbjct: 973  VKNAPGMSWFEIGKQVHEFVAGDRSHPKTDEIYVVLDKLELLMRRAGYEADKG---LDVE 1029

Query: 629  EEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIAR 688
            +E KE AL +HSE++AIA+GLI+T P TT++IVKNLRVCG+CH+ATK IS +  REII R
Sbjct: 1030 DELKEKALGYHSERIAIAFGLIATPPETTLKIVKNLRVCGDCHTATKYISMVMGREIIVR 1089

Query: 689  DRNRFHHFKDGNCSCNDYW 707
            D  RFHHF +G CSC D W
Sbjct: 1090 DSLRFHHFSNGTCSCKDCW 1108



 Score =  228 bits (582), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 158/499 (31%), Positives = 252/499 (50%), Gaps = 25/499 (5%)

Query: 31  QPSLALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVF 87
           Q   ALL  C +  ++   K  H  I   GL    F  + LI +      G L  A  +F
Sbjct: 26  QEYTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINM--YVRCGSLEEAHAIF 83

Query: 88  ETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMIL-SGFVPNTYTFPFILKSCAKISAI 146
             + E N V W  +I  ++   +   A   +  M+L S   PN+YT   +L +CA    +
Sbjct: 84  SKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDL 143

Query: 147 SEGKQIHAHVLKLGLE----SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
           + G+ IHA + +LGLE    +   V  ++INMYA+ G LE A  VF     +D VS+TA+
Sbjct: 144 AIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAM 203

Query: 203 ITGYAS-RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
              YA  R +  DA ++F EM +  +   PN  T +T L AC    SL  G W+ SL+  
Sbjct: 204 AGAYAQERRFYPDALRIFREMLL--QPLAPNVITFITALGACT---SLRDGTWLHSLLHE 258

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR---DVISWNVMIGGYTHTSDYKEA 318
             LG +   +NALI+MY KCGD   A  +F+++  R   D++SWN MI        + +A
Sbjct: 259 ASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDA 318

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG--KWIHAYIDKNHQKLNNVSLWTSL 376
           + +FR++    + PN VT +++L A A  G +D G  +  H  I ++   L +V +  ++
Sbjct: 319 MAIFRRLRLEGMRPNSVTLITILNALAASG-VDFGAARGFHGRIWESGY-LRDVVIGNAI 376

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKT-LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           I MYAKCG   AA  VF  + +K  + SWN M+          K ++ F  M+  G+ P+
Sbjct: 377 ISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPN 436

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
            ++F+ +L+AC+++  LD GR+  + ++   +   +      +V + G+ G   EAE + 
Sbjct: 437 KVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVF 496

Query: 496 KTMEMKPDAAI-WTSLLGA 513
           K M +   + + W  +LGA
Sbjct: 497 KEMPLPSRSLVTWNVMLGA 515



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 161/571 (28%), Positives = 254/571 (44%), Gaps = 58/571 (10%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLH--NTQFALSKLIEICAVSPFGDLSYALLVFE 88
           +A+L+ C N +++   + +H+ I + GL   +T   L     I   +  G L  A+ VF 
Sbjct: 131 VAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFL 190

Query: 89  TIREPNQVIWNNIIRGHSLSSSPVV-AIKFYVRMILSGFVPNTYTFPFILKSCAKISAIS 147
            I E + V W  +   ++        A++ +  M+L    PN  TF   L +C   +++ 
Sbjct: 191 AIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGAC---TSLR 247

Query: 148 EGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR---DAVSYTALIT 204
           +G  +H+ + +  L  DP    +LINMY + G+ E A  VF   + R   D VS+ A+I+
Sbjct: 248 DGTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMIS 307

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG-SLELGNWVCSLIEGHG 263
                G   DA  +F  +  R E   PN  T++T+L+A A  G            I   G
Sbjct: 308 ASVEAGRHGDAMAIFRRL--RLEGMRPNSVTLITILNALAASGVDFGAARGFHGRIWESG 365

Query: 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLF 322
              ++ + NA+I MY+KCG    A  +F  I  K DVISWN M+G       + + +  F
Sbjct: 366 YLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTF 425

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
             ML + I+PN V+F+++L AC+   ALD G+ IH+ I    +     S+ T L+ MY K
Sbjct: 426 HHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGK 485

Query: 383 CGNIKAAEQVFDGMGY--KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFV 440
           CG+I  AE VF  M    ++L +WN M+   A + ++ +A      M+  G+ PD ++F 
Sbjct: 486 CGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFT 545

Query: 441 GVLSAC-------------------------------NHAGLLDIGRQYFNAMIQDYKIS 469
            VLS+C                                    L+  R  FN M     +S
Sbjct: 546 SVLSSCYCSQEAQVLRMCILESGYRSACLETALISMHGRCRELEQARSVFNEMDHGDVVS 605

Query: 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK---PDAAIWTSLLGACRVHGRLELGESV 526
                +  MV        F E   L + M+++   PD     + L  C     L LG+ +
Sbjct: 606 -----WTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVI 660

Query: 527 AKHLLELEPENPGAYV-LLSNMYAGAGRWDD 556
              + E+  E   A    L NMY+  G W +
Sbjct: 661 HACVTEIGLEADIAVENALLNMYSNCGDWRE 691



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 158/332 (47%), Gaps = 12/332 (3%)

Query: 237 VTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK 296
             +L +C     L  G     LI   GL  +L + N LI+MY +CG L +A  +F  +E+
Sbjct: 29  TALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEE 88

Query: 297 RDVISWNVMIGGYTHTSDYKEALMLFRQM-LQSNIEPNDVTFLSVLPACAYLGALDLGKW 355
           R+V+SW  +I        +  A  LFR M L+S+  PN  T +++L ACA    L +G+ 
Sbjct: 89  RNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRS 148

Query: 356 IHAYIDK---NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLA 412
           IHA I +            +  ++I+MYAKCG+++ A  VF  +  K + SW AM    A
Sbjct: 149 IHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYA 208

Query: 413 MHGK-ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK 471
              +    AL +F  M+ + L P+ ITF+  L AC    L D    + ++++ +  +   
Sbjct: 209 QERRFYPDALRIFREMLLQPLAPNVITFITALGACT--SLRD--GTWLHSLLHEASLGFD 264

Query: 472 LQHYGCMVDLLGRAGLFDEAEALLKTMEMKP--DAAIWTSLLGACRVHGRLELGESVAKH 529
                 ++++ G+ G ++ A ++ K M  +   D   W +++ A    GR     ++ + 
Sbjct: 265 PLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRR 324

Query: 530 LLELEPENPGAYVLLSNMYAGAGRWDDVATIR 561
            L LE   P +  L++ + A A    D    R
Sbjct: 325 -LRLEGMRPNSVTLITILNALAASGVDFGAAR 355


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 253/638 (39%), Positives = 379/638 (59%), Gaps = 3/638 (0%)

Query: 71  ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNT 130
           + A S  G++      F+ +   + V WN +I  +  +        F+  M+L G  P  
Sbjct: 2   LSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPGE 61

Query: 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK 190
                 L +C     I+ G+ I   +L  G+E +  V T+L++MY + G    A  VF +
Sbjct: 62  VGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFLR 121

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250
            S RD V+++A++  YA  G+  +A  LF +M +  +   PN+ T+V+ L ACA +G L 
Sbjct: 122 MSHRDVVAWSAMVAAYARNGHPREALGLFRQMDL--DGVAPNKVTLVSGLDACASLGDLR 179

Query: 251 LGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYT 310
            G  +   +E  G+ S + V  AL+++Y KCG +  A + F  I +++V++W+ +   Y 
Sbjct: 180 SGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYA 239

Query: 311 HTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL-NN 369
                ++A+ +  +M    + PN  TF+SVL ACA + AL  G+ IH         L ++
Sbjct: 240 RNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESD 299

Query: 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG 429
           V + T+L++MY+KCGN+  A  +FD + +  L  WN++I+  A HG+ +KAL LF RM  
Sbjct: 300 VYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRL 359

Query: 430 EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489
           EGLQP  ITF  VL AC+HAG+LD GR++F + I D+ I P+ +H+GCMVDLLGRAG   
Sbjct: 360 EGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIV 419

Query: 490 EAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549
           ++E LL  M  +P    W + LGACR +  ++     A++L +L+P     YVLLSNMYA
Sbjct: 420 DSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRKRAPYVLLSNMYA 479

Query: 550 GAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDA 609
            AGRW DVA +R  +      K  G S IEV   VHEF+ GD  HP+   I+  L  +  
Sbjct: 480 KAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTK 539

Query: 610 LLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGN 669
           L++++G+VPDT  VL+D+ +E KE  + +HSEKLA+A+ L++T  G+ IR+VKNLRVC +
Sbjct: 540 LMKEAGYVPDTEMVLHDVKQEVKEIMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRVCND 599

Query: 670 CHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           CH+A+K ISK+ NREI+ RD NRFH F++G CSC DYW
Sbjct: 600 CHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 637



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 130/469 (27%), Positives = 212/469 (45%), Gaps = 47/469 (10%)

Query: 171 LINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV 230
           +++ Y+Q G + + R  F++  + D VS+ ALI  Y      D     F  M ++  N  
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGIN-- 58

Query: 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDL 290
           P E  +   LSAC     + +G  +   I G G+     V  AL+ MY K G    A  +
Sbjct: 59  PGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASV 118

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350
           F  +  RDV++W+ M+  Y      +EAL LFRQM    + PN VT +S L ACA LG L
Sbjct: 119 FLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDL 178

Query: 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISG 410
             G  +H  ++    + + V + T+L+++Y KCG I+AA + F  +  K + +W+A+ + 
Sbjct: 179 RSGALMHQRVEAQGIQ-SGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAA 237

Query: 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR------QYFNAMIQ 464
            A + +   A+ +  RM  EGL P+  TFV VL AC     L  GR      Q     ++
Sbjct: 238 YARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLE 297

Query: 465 D--YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
              Y ++  +  Y    +L     +FD+   L        D  +W SL+     HG+ E 
Sbjct: 298 SDVYVLTALVNMYSKCGNLALAGDMFDKIAHL--------DLVLWNSLIATNAQHGQTEK 349

Query: 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582
              + +  + LE   P      S ++A +            + D+G K            
Sbjct: 350 ALELFER-MRLEGLQPTIITFTSVLFACS---------HAGMLDQGRKHFVS-------- 391

Query: 583 VVHEFLVGDK-VHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
                 +GD  + P+++H   M+D    LL ++G++ D+ ++L  M  E
Sbjct: 392 -----FIGDHGIFPEAEHFGCMVD----LLGRAGWIVDSEDLLLHMPFE 431


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 263/682 (38%), Positives = 409/682 (59%), Gaps = 17/682 (2%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEI---CAVSPFGDLSYALLVFET 89
           +L  C+ + ++   + +H+     GLH   F  + LI++   CA   FG    A  VF  
Sbjct: 105 VLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCA--RFGP---AANVFAK 159

Query: 90  IREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI-LSGFVPNTYTFPFILKSCAKISAISE 148
           +   + V WN ++ G++       AI   + M    G  PN  T   +L   A+  A+ +
Sbjct: 160 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQ 219

Query: 149 GKQIHAHVLKLGL---ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
           G  +HA+ L+  L   E    + T+L++MYA+   L  A  VF+  ++R+ V+++ALI G
Sbjct: 220 GTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGG 279

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           +     + +A  LF +M +    F+ + ++V + L  CA +  L +G  + +L+   G+ 
Sbjct: 280 FVLCDRMTEAFNLFKDMLVEGMCFL-SATSVASALRVCASLADLRMGTQLHALLAKSGIH 338

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
           ++L   N+L+ MY+K G + +A  LF+ I  +D IS+  ++ GY      +EA ++F++M
Sbjct: 339 ADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKM 398

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
              N++P+  T +S++PAC++L AL  G+  H  +      L   S+  SLIDMYAKCG 
Sbjct: 399 QACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALET-SICNSLIDMYAKCGR 457

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           I  + QVFD M  + + SWN MI+G  +HG   +A +LF  M  +G +PDD+TF+ +++A
Sbjct: 458 IDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAA 517

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           C+H+GL+  G+ +F+ M   Y I P+++HY CMVDLL R G  DEA   +++M +K D  
Sbjct: 518 CSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVR 577

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
           +W +LLGACR+H  ++LG+ V++ + +L PE  G +VLLSN+++ AGR+D+ A +R    
Sbjct: 578 VWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQK 637

Query: 566 DKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLY 625
            KG KK PGCS IE+   +H F+ GD+ HP S  IY  LD I   ++K G+  DTS VL 
Sbjct: 638 VKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPDIYHELDNILIDIKKLGYQADTSFVLQ 697

Query: 626 DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREI 685
           D++EE KE AL +HSEKLAIA+G++S     TI + KNLRVCG+CH+A K ++ + NR I
Sbjct: 698 DLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTI 757

Query: 686 IARDRNRFHHFKDGNCSCNDYW 707
           I RD NRFHHFK+G CSC D+W
Sbjct: 758 IVRDANRFHHFKNGQCSCGDFW 779



 Score =  221 bits (563), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 145/464 (31%), Positives = 236/464 (50%), Gaps = 13/464 (2%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G L+ A  VF+ I  P+   +N +IR +S       AI  Y  M+     PN YTFPF+L
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
           K+C+ ++ +  G+ IHAH   +GL +D FV T+LI++Y +      A  VF K  +RD V
Sbjct: 107 KACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVV 166

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           ++ A++ GYA+ G    A     +M  R     PN ST+V++L   A  G+L  G  V +
Sbjct: 167 AWNAMLAGYANHGMYHHAIAHLLDMQDR-GGLRPNASTLVSLLPLLAQHGALFQGTSVHA 225

Query: 258 LIEGHGLGSN---LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
                 L  N   + +  AL+DMY+KC  LV A  +F  +  R+ ++W+ +IGG+     
Sbjct: 226 YCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDR 285

Query: 315 YKEALMLFRQMLQSNIEPNDVTFL-SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
             EA  LF+ ML   +     T + S L  CA L  L +G  +HA + K+     +++  
Sbjct: 286 MTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIH-ADLTAG 344

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
            SL+ MYAK G I  A  +FD +  K   S+ A++SG   +GKA++A  +F +M    +Q
Sbjct: 345 NSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQ 404

Query: 434 PDDITFVGVLSACNHAGLLDIGR-QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
           PD  T V ++ AC+H   L  GR  + + +I+   +   + +   ++D+  + G  D + 
Sbjct: 405 PDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICN--SLIDMYAKCGRIDLSR 462

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536
            +   M  + D   W +++    +HG   LG+      L ++ +
Sbjct: 463 QVFDKMPAR-DIVSWNTMIAGYGIHG---LGKEATTLFLSMKNQ 502



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 129/431 (29%), Positives = 195/431 (45%), Gaps = 58/431 (13%)

Query: 172 INMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVP 231
           +  +   G+L  AR VF++    DA +Y ALI  Y+ RG    A  L+  M        P
Sbjct: 40  LEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFR--VPP 97

Query: 232 NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLF 291
           N+ T   VL AC+ +  L  G  + +     GL ++L V+ ALID+Y +C     A ++F
Sbjct: 98  NKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVF 157

Query: 292 ESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVLPACAYLGAL 350
             +  RDV++WN M+ GY +   Y  A+     M  +  + PN  T +S+LP  A  GAL
Sbjct: 158 AKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGAL 217

Query: 351 DLGKWIH-----AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
             G  +H     AY+D+N ++   V + T+L+DMYAKC ++  A +VF GM  +   +W+
Sbjct: 218 FQGTSVHAYCLRAYLDQNEEQ---VLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWS 274

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVG-VLSACNHAGLLDIGRQYFNAMIQ 464
           A+I G  +  +  +A +LF  M+ EG+     T V   L  C     L +G Q  +A++ 
Sbjct: 275 ALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQ-LHALLA 333

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK----------------------- 501
              I   L     ++ +  +AGL +EA  L   + +K                       
Sbjct: 334 KSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFL 393

Query: 502 -----------PDAAIWTSLLGACR-----VHGRLELGESVAKHL-LELEPENPGAYVLL 544
                      PD A   SL+ AC       HGR   G  + + L LE    N      L
Sbjct: 394 VFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNS-----L 448

Query: 545 SNMYAGAGRWD 555
            +MYA  GR D
Sbjct: 449 IDMYAKCGRID 459



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 73/176 (41%), Gaps = 8/176 (4%)

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
           W   ++ +   G +  A QVFD +      ++NA+I   +  G    A+ L+  M+   +
Sbjct: 36  WQQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRV 95

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
            P+  TF  VL AC+    L  GR   +A      +   L     ++DL  R   F  A 
Sbjct: 96  PPNKYTFPFVLKACSALADLCAGRT-IHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAA 154

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE---NPGAYVLLS 545
            +   M M+ D   W ++L     HG   +      HLL+++      P A  L+S
Sbjct: 155 NVFAKMPMR-DVVAWNAMLAGYANHG---MYHHAIAHLLDMQDRGGLRPNASTLVS 206


>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
          Length = 1033

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 259/644 (40%), Positives = 389/644 (60%), Gaps = 46/644 (7%)

Query: 28  LQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF-GDLSYALLV 86
           +   P +++L KC ++  ++Q+H+Q+IKT L N QF +S+LI  C++S   G L YA  V
Sbjct: 4   ISTNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSV 63

Query: 87  FETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI--LSGFVPNTYTFPFILKSCAKIS 144
           F  I+ PN  I+  +I+G S +S+PV ++  Y RM+  L+      ++ P +LK+C K+ 
Sbjct: 64  FSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLL 123

Query: 145 AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
           A  EG+Q+H  VLK  L  DPFV  S++ MY   GE+E AR VF++   RD VS+ ++I 
Sbjct: 124 AFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIA 183

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
           GY   G ++ A +LFDEMP R+             L +C                     
Sbjct: 184 GYLKAGEIELASELFDEMPERD-------------LVSC--------------------- 209

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
                  NA+ID Y KCG    A  +FE++  +DV++W  MI  Y       +AL LFR+
Sbjct: 210 -------NAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFRE 262

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           ML   + P+    +SVL A A LG ++ GKW+HAY+  N  +L++  + ++LIDMY+KCG
Sbjct: 263 MLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCG 322

Query: 385 NIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
            I+ A  VF  + ++  +  WN+MISGLA+HG A +AL +F  M    ++P++ITF+G+L
Sbjct: 323 YIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLL 382

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
           S C+H GL++ G+ YF +M + YKI P++QHYGCM+DL GRAG  ++A  +++ M  + D
Sbjct: 383 STCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEAD 442

Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563
              W ++L A   HG +E+G+S A   +EL P++  +YVLLSN+YA AGRWDDVA IR  
Sbjct: 443 LLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLM 502

Query: 564 LNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQ-SKHIYEMLDEIDALLEKSGFVPDTSE 622
           +  +G+KK+ GCSS+ V   VHEFL G ++    S  +   + E+ + L+  G+ PD ++
Sbjct: 503 MRQRGVKKIAGCSSMLVBGKVHEFLXGKELDSSYSGQVLAKIAEVVSRLKLQGYEPDLTQ 562

Query: 623 VLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRV 666
           VL D+++E KE  L+ HSEK+A A+GLI       I IVKNLR+
Sbjct: 563 VLLDIEDEGKESLLNLHSEKMAXAFGLIHINKSAPIHIVKNLRI 606


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 256/593 (43%), Positives = 376/593 (63%), Gaps = 12/593 (2%)

Query: 122 ILSGFVPNTYTFPF-----ILKSCAKISAISEGKQIHAHVLKLGLE-SDPFVHTSLI-NM 174
           + + FV  T   P      +L+ CA  S+  + KQIHA  ++ G+  ++P +   LI  +
Sbjct: 4   VTTNFVSTTPENPLTKCISLLQFCA--SSKHKLKQIHAFSIRHGVSLNNPDMGKHLIFTI 61

Query: 175 YAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNES 234
            + +  +  A  VF      +  ++  +I GYA       A   + +M +      P+  
Sbjct: 62  VSLSAPMSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVV--SCVEPDTH 119

Query: 235 TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
           T   +L A +   ++  G  + S+   +G  S + V N+L+ +Y+ CGD   A  +FE +
Sbjct: 120 TYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELM 179

Query: 295 EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGK 354
           ++RD+++WN MI G+       EAL LFR+M    +EP+  T +S+L A A LGAL+LG+
Sbjct: 180 KERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGR 239

Query: 355 WIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMH 414
            +H Y+ K      N  +  SL+D+YAKCG I+ A++VF  M  +   SW ++I GLA++
Sbjct: 240 RVHVYLLKVGLS-KNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVN 298

Query: 415 GKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQH 474
           G  ++AL LF  M G+GL P +ITFVGVL AC+H G+LD G +YF  M ++  I P+++H
Sbjct: 299 GFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEH 358

Query: 475 YGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534
           YGCMVDLL RAGL  +A   ++ M ++P+A IW +LLGAC +HG L LGE    HLL LE
Sbjct: 359 YGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLE 418

Query: 535 PENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVH 594
           P++ G YVLLSN+YA   RW DV  IR  +   G+KK PG S +E+G+ V+EF +GD+ H
Sbjct: 419 PKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSH 478

Query: 595 PQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKP 654
           PQS+ +Y +L++I  LL+  G+VP T+ VL D++EE KE ALS+HSEK+AIA+ L++T P
Sbjct: 479 PQSQDVYALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKVAIAFMLLNTPP 538

Query: 655 GTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           GT IR++KNLRVC +CH A KLI+KI++REI+ RDR+RFHHF+ G+CSC DYW
Sbjct: 539 GTPIRVMKNLRVCADCHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 132/384 (34%), Positives = 218/384 (56%), Gaps = 4/384 (1%)

Query: 34  LALLSKC-TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           ++LL  C ++   +KQ+H+  I+ G+      + K +    VS    +SYA  VF  I  
Sbjct: 21  ISLLQFCASSKHKLKQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSAPMSYAYNVFTVIHN 80

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
           PN   WN IIRG++ S +P  A  FY +M++S   P+T+T+PF+LK+ +K   + EG+ I
Sbjct: 81  PNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAI 140

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H+  ++ G ES  FV  SL+++YA  G+ ESA  VF     RD V++ ++I G+A  G  
Sbjct: 141 HSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRP 200

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           ++A  LF EM +  E   P+  TVV++LSA A +G+LELG  V   +   GL  N HVTN
Sbjct: 201 NEALTLFREMSV--EGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTN 258

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           +L+D+Y+KCG + +A+ +F  + +R+ +SW  +I G       +EAL LF++M    + P
Sbjct: 259 SLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVP 318

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           +++TF+ VL AC++ G LD G      + +    +  +  +  ++D+ ++ G +K A + 
Sbjct: 319 SEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEY 378

Query: 393 FDGMGYKTLAS-WNAMISGLAMHG 415
              M  +  A  W  ++    +HG
Sbjct: 379 IQNMPVQPNAVIWRTLLGACTIHG 402


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 267/733 (36%), Positives = 409/733 (55%), Gaps = 67/733 (9%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ 95
           LL  C   ++ K++H  IIK   +   F L+ L+   A + F  ++YA  VF+ + + N 
Sbjct: 21  LLKHC---RDTKKIHCHIIKAFRNPEIFLLNNLVS--AYAKFDRITYARRVFDQMPQRNL 75

Query: 96  VIWNNIIRG--------------HSLSSSPVVA-----------------IKFYVRMILS 124
             WN ++                H++ +  +V+                 +K Y  M+ +
Sbjct: 76  YSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYN 135

Query: 125 G-FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELES 183
           G F  N      +L   +K   +  G Q+H HV+K G +S  FV + L++MY++ G +  
Sbjct: 136 GPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFC 195

Query: 184 ARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM--------------------- 222
           AR  F++   ++ V Y  LI G      ++D+RQLF +M                     
Sbjct: 196 ARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLD 255

Query: 223 --------PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274
                    +R EN   ++ T  +VL+AC  + +L+ G  V + I       N+ V +AL
Sbjct: 256 REAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSAL 315

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
           +DMY KC  +  A  +F  +  ++V+SW  M+ GY      +EA+ +F  M  + IEP+D
Sbjct: 316 VDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDD 375

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
            T  SV+ +CA L +L+ G   H     +   ++ +++  +L+ +Y KCG+I+ + ++F 
Sbjct: 376 FTLGSVISSCANLASLEEGAQFHCRALVSGL-ISFITVSNALVTLYGKCGSIEDSHRLFS 434

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
            M Y    SW A++SG A  GKA++ L LF  M+  G +PD +TF+GVLSAC+ AGL+  
Sbjct: 435 EMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQK 494

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
           G Q F +MI++++I P   HY CM+DL  RAG  +EA   +  M   PDA  W SLL +C
Sbjct: 495 GNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSC 554

Query: 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPG 574
           R H  +E+G+  A+ LL+LEP N  +Y+LLS++YA  G+W++VA +R  + DKG++K PG
Sbjct: 555 RFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPG 614

Query: 575 CSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEG 634
           CS I+  + VH F   D+ +P S  IY  L++++  + + G+VPD + VL+D+D+  K  
Sbjct: 615 CSWIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMNSVLHDVDDSEKIK 674

Query: 635 ALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFH 694
            L+HHSEKLAIA+GLI   PG  IR+VKNLRVCG+CH+ATK ISKI  REI+ RD  RFH
Sbjct: 675 MLNHHSEKLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKYISKITQREILVRDAARFH 734

Query: 695 HFKDGNCSCNDYW 707
            FKDG CSC D+W
Sbjct: 735 LFKDGRCSCGDFW 747



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 133/456 (29%), Positives = 214/456 (46%), Gaps = 70/456 (15%)

Query: 140 CAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK--------- 190
           C  +    + K+IH H++K     + F+  +L++ YA+   +  AR VF++         
Sbjct: 19  CELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSW 78

Query: 191 -------SSL---------------RDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
                  S L               RD VS+ +LI+ YA RG+L  + + ++ M +    
Sbjct: 79  NTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLM-LYNGP 137

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK-------- 280
           F  N   + T+L   +  G + LG  V   +   G  S + V + L+DMYSK        
Sbjct: 138 FNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCAR 197

Query: 281 -----------------------CGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
                                  C  +  +R LF  ++++D ISW  MI G+T     +E
Sbjct: 198 QAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDRE 257

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           A+ LFR+M   N+E +  TF SVL AC  + AL  GK +HAYI +   + +N+ + ++L+
Sbjct: 258 AIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQ-DNIFVGSALV 316

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI 437
           DMY KC +IK+AE VF  M  K + SW AM+ G   +G +++A+ +F  M   G++PDD 
Sbjct: 317 DMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDF 376

Query: 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT 497
           T   V+S+C +   L+ G Q+    +    IS  +     +V L G+ G  +++  L   
Sbjct: 377 TLGSVISSCANLASLEEGAQFHCRALVSGLISF-ITVSNALVTLYGKCGSIEDSHRLFSE 435

Query: 498 MEMKPDAAIWTSLLGACRVHGR----LELGESVAKH 529
           M    D   WT+L+      G+    L L ES+  H
Sbjct: 436 MSY-VDEVSWTALVSGYAQFGKANETLRLFESMLAH 470


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 252/564 (44%), Positives = 359/564 (63%), Gaps = 7/564 (1%)

Query: 149 GKQIHAHVLKLGL-ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA 207
           G+Q+H   ++ GL  SDPF  ++L++MY        AR  F++    + V  TA+ +GY 
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYV 167

Query: 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
               +  +  LF ++         +E+  +   SA A +    + + + +L+   GL  +
Sbjct: 168 RNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDGD 227

Query: 268 LHVTNALIDMYSKCG--DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
             V N ++D Y+K G  DL  AR +F+++EK DV+SWN MI  Y       +AL L+R+M
Sbjct: 228 AGVVNTMLDAYAKGGRRDLGAARKVFDTMEK-DVVSWNSMIALYAQNGMSADALGLYRKM 286

Query: 326 LQ--SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383
           L    +I+ N VT  ++L ACA+ G +  GK IH  + +   +  NV + TS++DMY+KC
Sbjct: 287 LNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLE-ENVYVGTSVVDMYSKC 345

Query: 384 GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
           G ++ A + F  +  K + SW+AMI+G  MHG   +AL +F+ M   G  P+ ITF+ VL
Sbjct: 346 GRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVL 405

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
           +AC+HAGLLD GR ++NAM + + I P ++HYGCMVDLLGRAG  DEA  L+K M++KPD
Sbjct: 406 AACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPD 465

Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563
           AAIW +LL ACR+H  +EL E  AK L EL+  N G YVLLSN+YA AG W DV  +R  
Sbjct: 466 AAIWGALLSACRIHKNVELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVERMRVL 525

Query: 564 LNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEV 623
           +  +G++K PG SS+E+    H F VGDK HPQ K IY  L ++   ++++G+VP+T  V
Sbjct: 526 VKTRGIEKPPGYSSVELKGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQEAGYVPNTGSV 585

Query: 624 LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNR 683
           L+D+DEE K  AL  HSEKLAIA+ L+++ PG+ I ++KNLRVC +CH+A KLI+KI  R
Sbjct: 586 LHDLDEEEKASALHIHSEKLAIAFALMNSVPGSVIHVIKNLRVCTDCHTAIKLITKIAQR 645

Query: 684 EIIARDRNRFHHFKDGNCSCNDYW 707
           EII RD  RFHHFKDG+CSC DYW
Sbjct: 646 EIIVRDLQRFHHFKDGSCSCGDYW 669



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 146/262 (55%), Gaps = 7/262 (2%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           +H+ ++KTGL      ++ +++  A     DL  A  VF+T+ E + V WN++I  ++ +
Sbjct: 215 LHALVVKTGLDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTM-EKDVVSWNSMIALYAQN 273

Query: 109 SSPVVAIKFYVRMI-LSGFVP-NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
                A+  Y +M+ +SG +  N  T   IL +CA    I  GK IH  V+++GLE + +
Sbjct: 274 GMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVY 333

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V TS+++MY++ G +E AR  F K   ++ +S++A+ITGY   G+  +A  +F+EM    
Sbjct: 334 VGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSG 393

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGN-WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
           +N  PN  T ++VL+AC+H G L+ G  W  ++ +  G+   +     ++D+  + G L 
Sbjct: 394 QN--PNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLD 451

Query: 286 KARDLFESIE-KRDVISWNVMI 306
           +A  L + ++ K D   W  ++
Sbjct: 452 EAYGLIKEMKVKPDAAIWGALL 473



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 87/176 (49%), Gaps = 7/176 (3%)

Query: 35  ALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           A+L  C +   +Q  K +H+Q+++ GL    +  + ++++   S  G +  A   F+ I+
Sbjct: 302 AILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDM--YSKCGRVEMARKAFQKIK 359

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           E N + W+ +I G+ +      A+  +  M  SG  PN  TF  +L +C+    + +G+ 
Sbjct: 360 EKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRY 419

Query: 152 -IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-DAVSYTALITG 205
             +A   + G+E     +  ++++  + G L+ A  +  +  ++ DA  + AL++ 
Sbjct: 420 WYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLSA 475


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 259/632 (40%), Positives = 368/632 (58%), Gaps = 26/632 (4%)

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNT---YTFPFILKSCAKISAISEGKQIHA 154
           W   IR  +       A+  ++RM  S   P +    + P  LKSCA +   + G  +HA
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASA-APRSSVPASLPAALKSCAALGLSALGASLHA 74

Query: 155 HVLKLGLESDPFVHTSLINMYAQ-------------------NGELESARLVFNKSSLRD 195
             ++ G  +D F   +L+N+Y +                   +   ES R VF++   RD
Sbjct: 75  LAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERD 134

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
            VS+  L+ G A  G   +A     +M    E F P+  T+ TVL   A    ++ G  V
Sbjct: 135 VVSWNTLVLGCAEEGRHHEALGFVRKMC--REGFRPDSFTLSTVLPIFAECADVKRGLEV 192

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
                 +G  S++ V ++LIDMY+ C     +  +F+++  RD I WN ++ G       
Sbjct: 193 HGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSV 252

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
           +EAL +FR+MLQ+ + P  VTF S++P C  L +L  GK +HAY+     + +NV + +S
Sbjct: 253 EEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFE-DNVFISSS 311

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           LIDMY KCG I  A  +FD M    + SW AMI G A+HG A +AL LF RM     +P+
Sbjct: 312 LIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPN 371

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
            ITF+ VL+AC+HAGL+D G +YF +M   Y I P L+H+  + D LGRAG  DEA   +
Sbjct: 372 HITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFI 431

Query: 496 KTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555
             M++KP A++W++LL ACRVH    L E VAK ++ELEP + G++V+LSNMY+ +GRW+
Sbjct: 432 SKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWN 491

Query: 556 DVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSG 615
           + A +R  +  KGMKK P CS IEV S +H F+  D+ HP    I + L+     + + G
Sbjct: 492 EAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHDRSHPWYDRIIDALNAFSEQMAREG 551

Query: 616 FVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATK 675
            VP+T +V  D++EE K   L  HSEKLAI +G+IST  GT IR++KNLRVC +CH+ TK
Sbjct: 552 HVPNTEDVFQDIEEEHKSYVLCGHSEKLAIVFGIISTPAGTKIRVMKNLRVCIDCHTVTK 611

Query: 676 LISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            ISK+ +REI+ RD NRFHHFKDGNCSC D+W
Sbjct: 612 FISKLADREIVVRDANRFHHFKDGNCSCGDFW 643



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 196/408 (48%), Gaps = 29/408 (7%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEICAVSPFG----------DLSYALLVFETIR------ 91
            +H+  I++G    +F  + L+ +    P            D+  +   FE++R      
Sbjct: 71  SLHALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEM 130

Query: 92  -EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            E + V WN ++ G +       A+ F  +M   GF P+++T   +L   A+ + +  G 
Sbjct: 131 IERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGL 190

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           ++H    + G +SD FV +SLI+MYA     + +  VF+   +RD + + +L+ G A  G
Sbjct: 191 EVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNG 250

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
            +++A  +F  M   +    P   T  +++  C ++ SL  G  + + +   G   N+ +
Sbjct: 251 SVEEALGIFRRM--LQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFI 308

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
           +++LIDMY KCG++  A  +F+ +   DV+SW  MI GY      +EAL+LF +M   N 
Sbjct: 309 SSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNA 368

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL-NNVSLWTSLIDMYAKCGNIKAA 389
           +PN +TFL+VL AC++ G +D G W +     NH  +   +  + +L D   + G +  A
Sbjct: 369 KPNHITFLAVLTACSHAGLVDKG-WKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEA 427

Query: 390 EQVFDGMGYKTLAS-WNAMISGLAMHGK-------ADKALSLFSRMIG 429
                 M  K  AS W+ ++    +H         A K + L  R IG
Sbjct: 428 YNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIG 475



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 150/275 (54%), Gaps = 6/275 (2%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L + ++C +++   +VH    + G  +  F  S LI++ A     D  Y++ VF+ +   
Sbjct: 177 LPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTD--YSVKVFDNLPVR 234

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           + ++WN+++ G + + S   A+  + RM+ +G  P   TF  ++  C  ++++  GKQ+H
Sbjct: 235 DHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLH 294

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
           A+V+  G E + F+ +SLI+MY + GE+  A  +F+K S  D VS+TA+I GYA  G   
Sbjct: 295 AYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAR 354

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVTN 272
           +A  LF+ M +   N  PN  T + VL+AC+H G ++ G  +  S+   +G+   L    
Sbjct: 355 EALVLFERMEL--GNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFA 412

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVIS-WNVMI 306
           AL D   + G+L +A +    ++ +   S W+ ++
Sbjct: 413 ALADTLGRAGELDEAYNFISKMQIKPTASVWSTLL 447


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 267/661 (40%), Positives = 392/661 (59%), Gaps = 8/661 (1%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           +HS I+K G  +  F  + LI   A S  G +  A  VFE I   + V+W  I+  +  +
Sbjct: 168 LHSPIVKLGYDSNAFVGAALIN--AYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVEN 225

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVH 168
                +++   RM + GF+PN YTF   LK+   + A    K +H  +LK   E DP V 
Sbjct: 226 GCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVG 285

Query: 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
             L+ +Y Q G++  A  VFN+    D V ++ +I  +   G+ + A  +F  M  RE  
Sbjct: 286 VGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRM--REGF 343

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288
            VPNE T+ ++L+ CA      LG  +  L+   G   +++V+NALID+Y+KC  +  A 
Sbjct: 344 VVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAV 403

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
            LF  +  ++V+SWN +I GY +  +  +AL +FR+ L++ +   +VTF S L ACA L 
Sbjct: 404 KLFAELSSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLA 463

Query: 349 ALDLGKWIHAY-IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
           +++LG  +H   I  N+ K   V++  SLIDMYAKCG+IK A+ VF+ M    +ASWNA+
Sbjct: 464 SMELGVQVHGLAIKTNNAK--RVAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNAL 521

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           ISG + HG   +AL +F  M G   +P+ +TF+GVLS C++AGL+D G+  F +MI D+ 
Sbjct: 522 ISGYSTHGLGRQALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHG 581

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
           I P L+HY CMV L GR+G  D+A  L++ +  +P   IW ++L A       E     A
Sbjct: 582 IEPCLEHYTCMVRLFGRSGQLDKAMNLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSA 641

Query: 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF 587
           + +L++ P++   YVLLSNMYAGA +W +VA+IR  + +KG+KK PG S IE    VH F
Sbjct: 642 EEILKINPKDEATYVLLSNMYAGAKQWANVASIRKSMKEKGVKKEPGLSWIEHQGDVHFF 701

Query: 588 LVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAY 647
            VG   HP  K I  ML+ ++    ++G+VPD + VL DMD+E K+  L  HSE+LA+AY
Sbjct: 702 SVGSSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAY 761

Query: 648 GLISTKPG-TTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDY 706
           GL+        I I+KNLR+C +CHSA K+IS I  R+++ RD NRFHHF  G CSC+D+
Sbjct: 762 GLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCDDH 821

Query: 707 W 707
           W
Sbjct: 822 W 822



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 131/501 (26%), Positives = 228/501 (45%), Gaps = 14/501 (2%)

Query: 21  SDPPYKLLQNQPSLALLSKCTNMQN---IKQVHSQIIKTGLHNTQFALSKLIEICAVSPF 77
           SD     L +     +L +C    +    K +H  I+K G     FA + L+     + F
Sbjct: 40  SDSVVPCLDSHAYGTMLRRCIRKNDSVSAKAIHCDILKKGSCLDLFATNILLNAYVKAGF 99

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
                AL +F+ + E N V +  + +G++        +  Y R+   G   N + F   L
Sbjct: 100 D--KDALNLFDEMPERNNVSYVTLTQGYACQD----PVGLYSRLHREGHELNPHVFTSFL 153

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
           K    +        +H+ ++KLG +S+ FV  +LIN Y+  G ++SAR VF     +D V
Sbjct: 154 KLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIV 213

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
            +  +++ Y   G  +D+ QL   M +  + F+PN  T  T L A   +G+      V  
Sbjct: 214 VWAGIVSCYVENGCFEDSLQLLSRMGM--DGFMPNNYTFDTALKASIGLGAFHFAKSVHG 271

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
            I       +  V   L+ +Y++ GD+  A  +F  + K DV+ W+ MI  +       +
Sbjct: 272 QILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNK 331

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           A+ +F +M +  + PN+ T  S+L  CA      LG+ +H  + K    L +V +  +LI
Sbjct: 332 AVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDL-DVYVSNALI 390

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI 437
           D+YAKC  +  A ++F  +  K + SWN +I G    G+  KAL++F   +   +   ++
Sbjct: 391 DVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQVSVTEV 450

Query: 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT 497
           TF   L AC     +++G Q     I+    + ++     ++D+  + G    A+ +   
Sbjct: 451 TFSSALGACASLASMELGVQVHGLAIKTNN-AKRVAVSNSLIDMYAKCGDIKVAQTVFNE 509

Query: 498 MEMKPDAAIWTSLLGACRVHG 518
           ME   D A W +L+     HG
Sbjct: 510 ME-TIDVASWNALISGYSTHG 529


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 254/619 (41%), Positives = 384/619 (62%), Gaps = 11/619 (1%)

Query: 8   LTLSPSILHFPPSSDP-----PYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQ 62
           + L PSI    P   P      Y+   +  SL+LL   ++ ++  Q+ S  I +G+    
Sbjct: 1   MLLLPSISISIPRRRPWGWAWGYRQSYHNFSLSLLQNLSHPRSFNQILSHAIASGVFRDP 60

Query: 63  FALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI 122
              SKL+   ++S   D +++  +F  I +PN   WN + R +S SS P   I  Y  M+
Sbjct: 61  VVSSKLLYY-SLSHDHDFAFSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLML 119

Query: 123 LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELE 182
            +G +P+ Y+FPF+LK+CA++S + +G++IH+  LKLG+  D FV  +LI+ ++  G +E
Sbjct: 120 RNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVE 179

Query: 183 SARLVFN--KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
           +AR VF+   + +RD VS+ ++I+GY      + A ++F E+ + + +  P+E T+V+ L
Sbjct: 180 AARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWEL-LGDGSLSPDEVTLVSAL 238

Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVI 300
           S C  +G L+LG  +  L  G G   ++ V ++LIDMYSKCG +  AR +F+ I  R+ +
Sbjct: 239 SVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTV 298

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
            W  MI GY  +  +KEA+ LFR+M       +  T   VL AC + GAL  G+WIH Y 
Sbjct: 299 CWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYC 358

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
           ++N  +++ ++   +LI MY+KCG+I+ A ++F G+    + SW+A+ISGLAM+G++DKA
Sbjct: 359 ERNSIEMD-LNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKA 417

Query: 421 LSLFSRM-IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479
           L LFS+M +   ++P++ITF+GVL ACNH G +D G  YFNAM Q Y ++P ++HYGCMV
Sbjct: 418 LHLFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMV 477

Query: 480 DLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG 539
           DLLGRA L  EAE  ++T+ ++PD  IW SLL ACR HG +EL E  AK + ELEP   G
Sbjct: 478 DLLGRANLLVEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCG 537

Query: 540 AYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKH 599
           A VLLSN+YA A RW DV  +R  +  + +KK PGCS +E+  +VHE  V D+ HP+   
Sbjct: 538 ARVLLSNVYASASRWGDVKRVRKDMATQRIKKQPGCSFVEIDGLVHELFVADRSHPEMGA 597

Query: 600 IYEMLDEIDALLEKSGFVP 618
           IYE +  I+  L+  GF P
Sbjct: 598 IYETMISINKALQSKGFDP 616


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 262/739 (35%), Positives = 417/739 (56%), Gaps = 90/739 (12%)

Query: 36  LLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           L+  C    ++K   +VH +I+K G    +   + L+ +   S  G L     +FE +  
Sbjct: 139 LIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGL--YSKCGKLKEVCQLFEKMTH 196

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + + WN +I  + L      A+  +  M++SG +P+  T   ++ +CAK+  +  GK++
Sbjct: 197 RDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRL 256

Query: 153 HAHVLKLGL---------------------------------ESDPFVHTSLINMYAQNG 179
           H +++   L                                 E D  + T+L++ Y ++ 
Sbjct: 257 HLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSN 316

Query: 180 ELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTV 239
           +++ AR +F+K + R  VS+T +++GY   GY  ++ +LF +M  R EN +P+E  +VTV
Sbjct: 317 KIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQM--RFENVIPDEVALVTV 374

Query: 240 LSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV-------------- 285
           LSAC H+   +LG  V + I  +G+  +  + NAL+D+Y+KCG L               
Sbjct: 375 LSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSA 434

Query: 286 -----------------KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
                            KARD F  I ++D++SWN M+  Y     + E+  +F +M  S
Sbjct: 435 ASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSS 494

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
           N++P+  T +S+L +CA +GAL+ G W++ YI+KN   ++ + L T+LIDMY KCG ++ 
Sbjct: 495 NVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAM-LGTALIDMYGKCGCVEM 553

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A ++F  +  K +  W AM++  AM G+A +A+ L+  M   G++PD +TF+ +L+AC+H
Sbjct: 554 AYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSH 613

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
            GL+D G +YFN +   Y I P + HYGCMVDLLGR G  +E    ++ M ++PD +IW+
Sbjct: 614 GGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWS 673

Query: 509 SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568
           SL+ ACR H  +EL E   K L+E++P N GA+VLLSN+YA AGRWDDV+ +RT+L++ G
Sbjct: 674 SLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETG 733

Query: 569 MKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
           + K PG + IE   VVHEF+  + V   S  I  ML +I+  L     + DT+       
Sbjct: 734 VPKQPGFTMIEQNGVVHEFVASNLV---SADILCMLQDIERRLLVKQELSDTT------- 783

Query: 629 EEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIAR 688
                   S HSE+LA+A+GLI+ +  + IR+V ++R+C +CHS  KLIS+ ++REI+ R
Sbjct: 784 --------SQHSERLAVAFGLINNQENSPIRVVNSVRMCRDCHSVMKLISQAYDREIVIR 835

Query: 689 DRNRFHHFKDGNCSCNDYW 707
           D  RFH F DG+CSC DYW
Sbjct: 836 DNYRFHRFTDGHCSCKDYW 854



 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 159/578 (27%), Positives = 283/578 (48%), Gaps = 76/578 (13%)

Query: 9   TLSPSILHFPPSSDPP--YKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGL-HNTQFAL 65
           +LSPSI H PP+ +P   + +L+    + LL  C+N++    +H+ +I   L H+ +   
Sbjct: 13  SLSPSI-HKPPTLNPKTSHSVLRPHWIIDLLKSCSNIREFSPIHAHLITANLIHDPEITS 71

Query: 66  SKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG 125
             L  + +V+   D ++ +L +    EP  +IWN ++        P   ++ Y  M+  G
Sbjct: 72  QVLAFLLSVNNL-DCAHQILSYS--HEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQG 128

Query: 126 FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR 185
            + +  TF F++ +C K   +  G ++H  +LK G   +  ++ +L+ +Y++ G+L+   
Sbjct: 129 VLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVC 188

Query: 186 LVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH 245
            +F K + RD +S+  +I+ Y  +G   +A  LFDEM +     +P+E T+V+++S CA 
Sbjct: 189 QLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLV--SGVLPDEITMVSLVSTCAK 246

Query: 246 MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG-----------------DLV--- 285
           +  LE+G  +   I  + L     + N L+DMYSKCG                 D+V   
Sbjct: 247 LKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWT 306

Query: 286 -------------KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
                        KAR LF+ + +R ++SW  M+ GY     Y E+L LF+QM   N+ P
Sbjct: 307 TLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIP 366

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           ++V  ++VL AC +L   DLG+ +HA+I   +  L +  L  +L+D+YAKCG +  A + 
Sbjct: 367 DEVALVTVLSACVHLEDFDLGRSVHAFI-VTYGMLVDGFLGNALLDLYAKCGKLDEALRT 425

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKA-------------------------------L 421
           F+ +  K+ ASWN+M+ G    G  DKA                                
Sbjct: 426 FEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESF 485

Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481
            +F +M    ++PD  T + +LS+C   G L+ G  + N  I+  +I         ++D+
Sbjct: 486 EIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHG-IWVNVYIEKNEIGIDAMLGTALIDM 544

Query: 482 LGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
            G+ G  + A  +  T  ++ +  +WT+++ A  + G+
Sbjct: 545 YGKCGCVEMAYEIF-TQIIEKNVFVWTAMMAAYAMEGQ 581



 Score = 44.3 bits (103), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 37/195 (18%), Positives = 84/195 (43%), Gaps = 9/195 (4%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGD---LSYALLVFETI 90
           ++LLS C  +  +   H   +   +   +  +  ++    +  +G    +  A  +F  I
Sbjct: 504 ISLLSSCAKVGALN--HGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQI 561

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            E N  +W  ++  +++    + AI  Y+ M   G  P+  TF  +L +C+    + EG 
Sbjct: 562 IEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGY 621

Query: 151 QIHAHVLKLGLESDPFVH--TSLINMYAQNGELESARLVFNKSSLRDAVS-YTALITGYA 207
           + + + L+      P +H    ++++  + G LE       +  +   VS +++L+    
Sbjct: 622 K-YFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACR 680

Query: 208 SRGYLDDARQLFDEM 222
           S   ++ A Q F ++
Sbjct: 681 SHHNVELAEQAFKQL 695


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 272/650 (41%), Positives = 392/650 (60%), Gaps = 48/650 (7%)

Query: 103 RGHSLSSS-----PVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ-----I 152
           RG + SSS        A+  YVRM+  G  P+ YTFP +LK+ A     +         I
Sbjct: 19  RGRAASSSVSGHGAEEAVAGYVRMLAGGARPDAYTFPSLLKAAAAARGAAVAAASVGGAI 78

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA----VSYTALITGYAS 208
           HAHV+K G+ES+    +SLI MYA  G+  +AR V   + L       V + ALI+G+  
Sbjct: 79  HAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHNR 138

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
            G  + +   F +M     + +    T V+VLSAC     L LG  V   +   G+  + 
Sbjct: 139 SGRFELSCCSFVDMV--RASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQ 196

Query: 269 HVTNALIDMYSKCGDLV-------------------------------KARDLFESIEKR 297
            V NAL+DMY++CGD+                                +ARDLF+ + +R
Sbjct: 197 RVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPER 256

Query: 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357
           D I+W  MI GY     +++AL  FR M    +  ++ T +SV+ ACA LGAL+ G+W  
Sbjct: 257 DTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWAR 316

Query: 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA 417
            Y+ +   K++ V +  +LIDMY+KCG+I+ A  VF  M  +   +W A+I GLA++G+ 
Sbjct: 317 IYMGRLGIKMD-VFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRG 375

Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
           ++A+ +F RM+     PD++TFVGVL+AC HAGL+D GR++F +M + Y ISP + HYGC
Sbjct: 376 EEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGC 435

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537
           ++D+LGRAG   EA   +  M MKP++ IW +LL +CRV+G  E+GE  A+ LLEL+P+N
Sbjct: 436 LIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLELDPDN 495

Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQS 597
             AY+LLSNMYA + RW DV  IR  + +KG+KK PGCS IE+  ++HEF+  D+ HP +
Sbjct: 496 STAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFVAADRSHPMN 555

Query: 598 KHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTT 657
           K IY  L+ +   L  +G+VPD +EVL ++ EE K+  L  HSEKLA+ + L++++    
Sbjct: 556 KEIYSKLENVLTDLRNAGYVPDVTEVLVEVTEEEKQKVLYWHSEKLAVTFALLTSESNVI 615

Query: 658 IRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           IRIVKNLR+C +CH+A KLISK++ RE+I RDR RFHHF+ G+CSC DYW
Sbjct: 616 IRIVKNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSCSCKDYW 665



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/428 (28%), Positives = 217/428 (50%), Gaps = 34/428 (7%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN--QVIWNNIIRGHS 106
           +H+ ++K G+ +   A S LI + A    G  + A+L    +       V+WN +I GH+
Sbjct: 78  IHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHN 137

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            S    ++   +V M+ +  +    T+  +L +C K   +  G Q+H  VL+ G+  D  
Sbjct: 138 RSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQR 197

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V  +L++MYA+ G++++A ++F    +R   S+T++I+G    G +D AR LFD MP R+
Sbjct: 198 VENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERD 257

Query: 227 ---------------------ENF--------VPNESTVVTVLSACAHMGSLELGNWVCS 257
                                E F          +E T+V+V++ACA +G+LE G W   
Sbjct: 258 TIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARI 317

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
            +   G+  ++ V NALIDMYSKCG + +A D+F+ +  RD  +W  +I G       +E
Sbjct: 318 YMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEE 377

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           A+ +F +ML++   P++VTF+ VL AC + G +D G+     + + +     V  +  LI
Sbjct: 378 AIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLI 437

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           D+  + G +K A    D M  K  ++ W  +++   ++G ++       R++   L PD+
Sbjct: 438 DVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLL--ELDPDN 495

Query: 437 ITFVGVLS 444
            T   +LS
Sbjct: 496 STAYILLS 503


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 252/580 (43%), Positives = 367/580 (63%), Gaps = 9/580 (1%)

Query: 135 FILKSCAKI-----SAISEGKQIHAHVLKLGLE-SDPFVHTSLI-NMYAQNGELESARLV 187
           FIL+ C  +     S+ S+ KQIHA  ++ G+   +P  +  LI  + + +  +  A  +
Sbjct: 32  FILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQI 91

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
           FN+    +  ++  +I G+A       A +LF +M     + +P+  T   +  A A + 
Sbjct: 92  FNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHA-ASSILPDTHTFPFLFKAVAKLM 150

Query: 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG 307
            + LG  + S++  +G  S   V N+L+ MYS  G L  A  +FE +  RD ++WN +I 
Sbjct: 151 DVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVIN 210

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
           G+       EAL L+R+M    +EP+  T +S+L AC  LGAL LG+ +H Y+ K    +
Sbjct: 211 GFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKV-GLV 269

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
            N     +L+D+Y+KCGN + A++VFD M  +++ SW ++I GLA++G  ++AL LF  +
Sbjct: 270 QNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGEL 329

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
             +GL+P +ITFVGVL AC+H G+LD G  YF  M ++Y I P+++H+GCMVDLL RAG 
Sbjct: 330 ERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGK 389

Query: 488 FDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547
             +A   ++ M + P+A IW +LLGAC +HG LELGE     +  LE  + G +VLLSN+
Sbjct: 390 VGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNL 449

Query: 548 YAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEI 607
           YA   RW DV  +R  +  KG+KK PG S +E+ + V+EF++GD+ HPQS+  Y ML +I
Sbjct: 450 YASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKI 509

Query: 608 DALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVC 667
             LL+  G+VP T  VL D++EE KE ALSHH+EK+AIA+ L++T PGT IRI+KNLRVC
Sbjct: 510 TQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVC 569

Query: 668 GNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            +CH A KLISK+F REII RDR+RFHHFKDG+CSC DYW
Sbjct: 570 ADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/385 (32%), Positives = 214/385 (55%), Gaps = 5/385 (1%)

Query: 34  LALLSKCTNMQN-IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           ++L+  C + Q+ +KQ+H+  I+ G+       +K +    VS    +S+A  +F  I+ 
Sbjct: 38  ISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQA 97

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRM-ILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           PN   WN +IRG + S +P  A++ + +M   S  +P+T+TFPF+ K+ AK+  +S G+ 
Sbjct: 98  PNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEG 157

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IH+ V++ G +S  FV  SL++MY+  G L SA  VF   S RD V++ ++I G+A  G 
Sbjct: 158 IHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGM 217

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
            ++A  L+ EM    E   P+  T+V++LSAC  +G+L LG  V   +   GL  N H +
Sbjct: 218 PNEALTLYREMG--SEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHAS 275

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           NAL+D+YSKCG+   A+ +F+ +E+R V+SW  +I G        EAL LF ++ +  ++
Sbjct: 276 NALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLK 335

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+++TF+ VL AC++ G LD G      + + +  L  +     ++D+  + G +  A  
Sbjct: 336 PSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYD 395

Query: 392 VFDGMGYKTLAS-WNAMISGLAMHG 415
               M     A  W  ++    +HG
Sbjct: 396 YIRNMPVPPNAVIWRTLLGACTIHG 420


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 263/692 (38%), Positives = 406/692 (58%), Gaps = 29/692 (4%)

Query: 34  LALLSKCTNMQNIK---QVHSQIIKTGLH---NTQFALSKLIEICAVSPFGDLSYALLVF 87
           +  L  C + ++++   ++H  ++ + L        AL  + + C     G LS+A  VF
Sbjct: 62  ITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKC-----GSLSHAKRVF 116

Query: 88  ETIREPNQVI-WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAI 146
             +     VI W+ +   H+L  +   A++ +  M+L G          IL +C+  + +
Sbjct: 117 AKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALV 176

Query: 147 SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK--SSLRDAVSYTALIT 204
            +G+ IH+ +   G ES+  V  +++ MY + G +E AR VF+    +LRD VS+  +++
Sbjct: 177 QDGRMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLS 236

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
            Y       DA QL+  M +R     P++ T V++LSAC+    + LG  +   I    L
Sbjct: 237 TYVHNDRGKDAIQLYQRMQLR-----PDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDEL 291

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
             N+ V NAL+ MY+KCG   +AR +F+ +E+R +ISW  +I  Y       EA  LF+Q
Sbjct: 292 EKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQ 351

Query: 325 MLQ-------SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           ML+         ++P+ + F+++L ACA + AL+ GK +           ++ ++ T+++
Sbjct: 352 MLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLS-SDKAVGTAVV 410

Query: 378 DMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           ++Y KCG I+ A ++FD +  +  +  WNAMI+  A  G++ +AL LF RM  EG++PD 
Sbjct: 411 NLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDS 470

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYK-ISPKLQHYGCMVDLLGRAGLFDEAEALL 495
            +FV +L AC+H GL D G+ YF +M  +Y+ ++  +QH+GC+ DLLGR G   EAE  L
Sbjct: 471 FSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFL 530

Query: 496 KTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555
           + + +KPDA  WTSLL ACR H  L+  + VA  LL LEP     YV LSN+YA   +W 
Sbjct: 531 EKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWH 590

Query: 556 DVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSG 615
            VA +R  + ++G+KK  G S+IE+G  +H+F  GD  HP+++ I E L ++ + +++ G
Sbjct: 591 AVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKECG 650

Query: 616 FVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATK 675
           +VPDT  VL+ +DE+ KE  L  HSE+LAIA GLIST  GT +R+ KNLRVC +CH+ATK
Sbjct: 651 YVPDTKMVLHFVDEQEKERLLFSHSERLAIALGLISTPLGTPLRVTKNLRVCSDCHTATK 710

Query: 676 LISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           LISKI  R+I+ RD  RFH FKDG CSC DYW
Sbjct: 711 LISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 742



 Score =  211 bits (538), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 138/483 (28%), Positives = 243/483 (50%), Gaps = 30/483 (6%)

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           A   F+ + + N   W  ++   ++S      ++   RM   G  P+  TF   L SC  
Sbjct: 11  AKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGD 70

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK-SSLRDAVSYTA 201
             ++ +G +IH  V+   LE DP V  +L+NMY + G L  A+ VF K    R+ +S++ 
Sbjct: 71  PESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSI 130

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
           +   +A  G + +A + F  M +        +S +VT+LSAC+    ++ G  + S I  
Sbjct: 131 MAGAHALHGNVWEALRHFRFMLLL--GIKATKSAMVTILSACSSPALVQDGRMIHSCIAL 188

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK--RDVISWNVMIGGYTHTSDYKEAL 319
            G  S L V NA++ MY +CG + +AR +F+++++  RDV+SWN+M+  Y H    K+A+
Sbjct: 189 SGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAI 248

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
            L+++M    + P+ VT++S+L AC+    + LG+ +H  I  N +   NV +  +L+ M
Sbjct: 249 QLYQRM---QLRPDKVTYVSLLSACSSAEDVGLGRVLHKQI-VNDELEKNVIVGNALVSM 304

Query: 380 YAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMI-------GEGL 432
           YAKCG+   A  VFD M  +++ SW  +IS         +A  LF +M+        + +
Sbjct: 305 YAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRV 364

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG----CMVDLLGRAGLF 488
           +PD + FV +L+AC     L+ G+     M+ +   S  L         +V+L G+ G  
Sbjct: 365 KPDALAFVTILNACADVSALEQGK-----MVSEQAASCGLSSDKAVGTAVVNLYGKCGEI 419

Query: 489 DEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHL--LELEPENPGAYVLLSN 546
           +EA  +   +  +PD  +W +++    V+ +        K    +E+E   P ++  +S 
Sbjct: 420 EEARRIFDAVCSRPDVQLWNAMIA---VYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSI 476

Query: 547 MYA 549
           + A
Sbjct: 477 LLA 479



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/374 (28%), Positives = 190/374 (50%), Gaps = 15/374 (4%)

Query: 174 MYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
           MYA       A+  F+    R+  S+T L+  +A  G   +  +  + M  R++   P+ 
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERM--RQDGVRPDA 58

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
            T +T L +C    SL  G  +  ++    L  +  V+NAL++MY KCG L  A+ +F  
Sbjct: 59  VTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAK 118

Query: 294 IEK-RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL 352
           +E+ R+VISW++M G +    +  EAL  FR ML   I+      +++L AC+    +  
Sbjct: 119 MERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQD 178

Query: 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM--GYKTLASWNAMISG 410
           G+ IH+ I  +  + + + +  +++ MY +CG ++ A +VFD M    + + SWN M+S 
Sbjct: 179 GRMIHSCIALSGFE-SELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLST 237

Query: 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470
              + +   A+ L+ RM    L+PD +T+V +LSAC+ A  + +GR     ++ D ++  
Sbjct: 238 YVHNDRGKDAIQLYQRM---QLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVND-ELEK 293

Query: 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES--VAK 528
            +     +V +  + G   EA A+   ME +   + WT+++ A  V  RL + E+  + +
Sbjct: 294 NVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIIS-WTTIISA-YVRRRL-VAEACHLFQ 350

Query: 529 HLLELEPENPGAYV 542
            +LELE       V
Sbjct: 351 QMLELEKNGSSQRV 364


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 256/597 (42%), Positives = 359/597 (60%), Gaps = 77/597 (12%)

Query: 115 IKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINM 174
           ++ Y RM   G + + +T PF+LKSCA +S +  G+ +H   L++GLE D +V  SLI+M
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151

Query: 175 YAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNES 234
           Y + G                                + DAR+LFD+M +R+        
Sbjct: 152 YVKCG-------------------------------VIGDARKLFDKMIVRD-------- 172

Query: 235 TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
                           + +W                 NALI  Y K G++  A DLFE +
Sbjct: 173 ----------------MASW-----------------NALIAGYMKEGEIGVAEDLFERM 199

Query: 295 EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ--SNIEPNDVTFLSVLPACAYLGALDL 352
           E R+++SW  MI GYT     ++AL LF +MLQ  S ++PN VT +SVLPACA   AL+ 
Sbjct: 200 EHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALER 259

Query: 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY--KTLASWNAMISG 410
           G+ IH + +     LN+ S+ T+L  MYAKC ++  A   FD +    K L +WN MI+ 
Sbjct: 260 GRRIHDFANGIGLHLNS-SVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITA 318

Query: 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470
            A HG   +A+S+F  M+  G+QPD +TF+G+LS C+H+GL+D G  +FN M   + + P
Sbjct: 319 YASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEP 378

Query: 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHL 530
           +++HY C+VDLLGRAG   EA+ L+  M M+   ++W +LL ACR H  LE+ E  A+ L
Sbjct: 379 RVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRL 438

Query: 531 LELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVG 590
             LEP+N G YVLLSN+YA AG W++V  +R  L  +GMKK PGCS IE+    H F+  
Sbjct: 439 FVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGA 498

Query: 591 DKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLI 650
           DK HPQ+K IY+ L+ +   ++ +G++PDTS VL+D+ EE KE  L+ HSEKLAIA+GL+
Sbjct: 499 DKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLL 558

Query: 651 STKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +T+PG  +R+ KNLR+CG+CH+ATK ISKI+ REII RD NRFH FKDG+CSC DYW
Sbjct: 559 NTRPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 615



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 126/263 (47%), Gaps = 10/263 (3%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG--FVPNTYTFPF 135
           G++  A  +FE +   N V W  +I G++ +     A+  +  M+  G    PN  T   
Sbjct: 187 GEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVS 246

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN--KSSL 193
           +L +CA+ +A+  G++IH     +GL  +  V T+L  MYA+   L  AR  F+    + 
Sbjct: 247 VLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNG 306

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG- 252
           ++ +++  +IT YAS G   +A  +F+ M        P+  T + +LS C+H G ++ G 
Sbjct: 307 KNLIAWNTMITAYASHGCGVEAVSIFENM--LRAGVQPDAVTFMGLLSGCSHSGLIDAGL 364

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVIS-WNVMIGGYTH 311
           N    +   H +   +     ++D+  + G LV+A++L   +  +   S W  ++     
Sbjct: 365 NHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRS 424

Query: 312 TSDYKEALMLFRQMLQSNIEPND 334
             + + A +  R++    +EP++
Sbjct: 425 HRNLEIAELAARRLFV--LEPDN 445


>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 249/568 (43%), Positives = 361/568 (63%), Gaps = 19/568 (3%)

Query: 53  IIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPV 112
           ++ TGL    FA S+LI  CA+S    L+Y + + + I  PN   WN  IRG S S +P 
Sbjct: 1   MVITGLVLDPFASSRLIAFCALSESRYLNYCVKILKGIENPNAFSWNVTIRGFSESENPK 60

Query: 113 VAIKFYVRMILSGFV---PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHT 169
            A+  Y +M+  G     P+ +T+P + K CA +   S G  I  HV KL LE    VH 
Sbjct: 61  DAVLAYKQMLRRGCCESRPDHFTYPVLFKVCADLRLNSLGHMILGHVFKLRLELVSHVHN 120

Query: 170 SLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENF 229
           + I+M+A  GE+E+AR VF++S +RD VS+  LI GY   G  + A +++  M    E  
Sbjct: 121 ASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVM--ESEGV 178

Query: 230 VPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARD 289
            P++ T++ ++S+CA +G L  G      ++ +GL   + + NAL+DM+SKCGD+ +AR 
Sbjct: 179 KPDDVTMIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARR 238

Query: 290 LFESIEKR-------------DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVT 336
           +F+++EKR             DV+ WN MIGG       ++AL LF++M  SN +P+++T
Sbjct: 239 IFDNLEKRTIVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEIT 298

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
            +  L AC+ LGALD+G WIH YI+K+   LN V+L TSL+DMYAKCGNI  A  VF G+
Sbjct: 299 MIHCLSACSQLGALDVGIWIHRYIEKHSLSLN-VALGTSLVDMYAKCGNISEALCVFHGI 357

Query: 397 GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR 456
             +   ++ A+I GLA+HG A  A+S F+ MI  G+ PD+ITF+G+LSAC H G++  GR
Sbjct: 358 QTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGR 417

Query: 457 QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRV 516
            YF+ M   + ++P+L+HY  MVDLLGRAGL +EA+ L+++M M+ DAA+W +LL  CR+
Sbjct: 418 DYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADKLMESMPMEADAAVWGALLFGCRM 477

Query: 517 HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCS 576
           HG ++LGE  AK LLEL+P + G YVLL  MY  A  W+D    R  +N++G++K+PGCS
Sbjct: 478 HGNVKLGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCS 537

Query: 577 SIEVGSVVHEFLVGDKVHPQSKHIYEML 604
           SIEV  +V EF+V DK  P+S+ IY+ L
Sbjct: 538 SIEVNGIVSEFIVRDKSRPESEKIYDCL 565


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 251/603 (41%), Positives = 362/603 (60%), Gaps = 37/603 (6%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
            L+SC  +S +   K IHAH+++     D F  + LI++      L+ A  VF +    +
Sbjct: 21  FLESCTTLSHL---KIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPN 77

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
              Y + I G++  G  D  +     +  +    VP+  T   ++ AC   GSL++G   
Sbjct: 78  LFIYNSFIRGFS--GSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQA 135

Query: 256 CSLIEGHGLGSNLHVTNALIDMYS-------------------------------KCGDL 284
              I  HG  S+++V N+L+ MYS                               K GD+
Sbjct: 136 HGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDV 195

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
             AR LF+ + ++++++W+VMI GY   S + +A+ L+  +    +  N+   +SV+ +C
Sbjct: 196 TSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASC 255

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
           A+LGAL+LG+  H YI +N   +N + L T+L+DMYA+CG+I  A  VFD +  +   SW
Sbjct: 256 AHLGALELGERAHDYILRNKMTVNLI-LGTALVDMYARCGSIDKAIWVFDQLPGRDALSW 314

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
             +I+G AMHG A+KAL  FSRM   GL P +ITF  VLSAC+H GL++ G + F +M +
Sbjct: 315 TTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKR 374

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGE 524
           DY+I P+L+HYGCMVDLLGRAG   EAE  +  M MKP+A IW +LLGACR+H   E+ E
Sbjct: 375 DYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAE 434

Query: 525 SVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVV 584
              K L+EL+PE+ G YVLLSN+YA   +W++V  IR  + ++G+ K PG +  E+   V
Sbjct: 435 RAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKV 494

Query: 585 HEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLA 644
           H+F +GDK HP+ + I  M +EI   +  +G+  +  + L+D+DEE KE  +  HSEKLA
Sbjct: 495 HKFTIGDKTHPEIQQIERMWEEILGKIRLAGYTGNNDDALFDIDEEEKESNIHRHSEKLA 554

Query: 645 IAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCN 704
           IAY ++ TK    IRIVKNLRVC +CH+ATKLISK++ RE+I RDRNRFHHFK G CSC 
Sbjct: 555 IAYAIMRTKGHDPIRIVKNLRVCEDCHTATKLISKVYERELIVRDRNRFHHFKGGACSCM 614

Query: 705 DYW 707
           DYW
Sbjct: 615 DYW 617



 Score =  235 bits (599), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 130/425 (30%), Positives = 226/425 (53%), Gaps = 32/425 (7%)

Query: 26  KLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALL 85
           KL    P L+ L  CT + ++K +H+ +I+       FA S LI I        L YA  
Sbjct: 11  KLELKNPKLSFLESCTTLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNL--LDYAAQ 68

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145
           VF  I+ PN  I+N+ IRG S S  P  +  FYV+   +G VP+  T+PF++K+C +  +
Sbjct: 69  VFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGS 128

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
           +  G Q H  +++ G +SD +V  SL+ MY+  G+++SA  VF + S  D VS+T+++ G
Sbjct: 129 LDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAG 188

Query: 206 YASRGYLDDARQLFDEMP-----------------------------IREENFVPNESTV 236
           Y   G +  AR+LFD+MP                             ++ E    NE+ +
Sbjct: 189 YIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVM 248

Query: 237 VTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK 296
           V+V+++CAH+G+LELG      I  + +  NL +  AL+DMY++CG + KA  +F+ +  
Sbjct: 249 VSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPG 308

Query: 297 RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
           RD +SW  +I G+      ++AL  F +M ++ + P ++TF +VL AC++ G ++ G  +
Sbjct: 309 RDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLEL 368

Query: 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHG 415
              + ++++    +  +  ++D+  + G +  AE+  + M  K  A  W A++    +H 
Sbjct: 369 FESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHK 428

Query: 416 KADKA 420
            ++ A
Sbjct: 429 NSEIA 433



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 153/316 (48%), Gaps = 37/316 (11%)

Query: 237 VTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK 296
           ++ L +C  +  L++ +    LI  H +  ++   + LI +      L  A  +F  I+ 
Sbjct: 19  LSFLESCTTLSHLKIIH--AHLIRAHTI-FDVFAASCLISISINKNLLDYAAQVFYQIQN 75

Query: 297 RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
            ++  +N  I G++ + D  ++   + Q  ++ + P+++T+  ++ AC   G+LD+G   
Sbjct: 76  PNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQA 135

Query: 357 H-------------------------------AYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
           H                               +Y+ +    L+ VS WTS++  Y K G+
Sbjct: 136 HGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVS-WTSMVAGYIKSGD 194

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           + +A ++FD M  K L +W+ MISG A +   DKA+ L+  +  EG+  ++   V V+++
Sbjct: 195 VTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIAS 254

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           C H G L++G +  + ++++ K++  L     +VD+  R G  D+A  +   +  + DA 
Sbjct: 255 CAHLGALELGERAHDYILRN-KMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGR-DAL 312

Query: 506 IWTSLLGACRVHGRLE 521
            WT+L+    +HG  E
Sbjct: 313 SWTTLIAGFAMHGYAE 328



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 120/275 (43%), Gaps = 36/275 (13%)

Query: 338 LSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG 397
           LS L +C  L  L   K IHA++ + H  + +V   + LI +      +  A QVF  + 
Sbjct: 19  LSFLESCTTLSHL---KIIHAHLIRAHT-IFDVFAASCLISISINKNLLDYAAQVFYQIQ 74

Query: 398 YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
              L  +N+ I G +     DK+   + +    GL PD++T+  ++ AC   G LD+G Q
Sbjct: 75  NPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQ 134

Query: 458 YFNAMIQD------YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
               +I+       Y  +  +  Y  + D+   + +F     L        D   WTS+ 
Sbjct: 135 AHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCL--------DVVSWTSM- 185

Query: 512 GACRVHGRLELGE-SVAKHLLELEPE-NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
               V G ++ G+ + A+ L +  PE N   + ++ + YA    +D    +   L  +G+
Sbjct: 186 ----VAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGV 241

Query: 570 KK--------VPGCS---SIEVGSVVHEFLVGDKV 593
                     +  C+   ++E+G   H++++ +K+
Sbjct: 242 HANETVMVSVIASCAHLGALELGERAHDYILRNKM 276


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 252/610 (41%), Positives = 378/610 (61%), Gaps = 12/610 (1%)

Query: 15  LHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAV 74
           L  P S   P +   +    +LL +C +++ +KQ+H+Q++   +H     L K+ ++   
Sbjct: 17  LQKPHSKPNPNRQALSDKFNSLLQQCLSIKQLKQIHAQLLTNSIHKPNSFLYKIADL--- 73

Query: 75  SPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS-SSPVVAIKFYVRMILSGFVPNTYTF 133
               D +YA + F  I +P +  +N +IRG S + +   +A++FY RM   G  PN  T+
Sbjct: 74  ---KDFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTY 130

Query: 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL 193
           PF+  +C+ + A+  G+  H  V++ GL+ D  V  SLI MYA+ G++  AR VF++ S 
Sbjct: 131 PFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQ 190

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
           +D VS+ ++I+GY+   +  +A  LF EM   E  F PNE ++V+VL AC  +G L+LG 
Sbjct: 191 KDLVSWNSMISGYSKMRHAGEAVGLFREM--MEAGFQPNEMSLVSVLGACGELGDLKLGT 248

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTS 313
           WV   +  + +  N  + +ALI MY KCGDLV AR +F+S++K+D ++WN MI GY    
Sbjct: 249 WVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNG 308

Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
             +EA+ LF+ M  S+  P+ +T + +L ACA +GALDLGK +  Y  +   + ++V + 
Sbjct: 309 MSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQ-DDVYVG 367

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG-- 431
           T+L+DMYAKCG++  A +VF GM  K   SWNAMIS LA HG+A +AL+LF  M+ EG  
Sbjct: 368 TALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGT 427

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
           + P+DITFVGVLSAC HAGL+D GR+ F+ M   + + PK++HY CMVDL  RAG  +EA
Sbjct: 428 VSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEA 487

Query: 492 EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA 551
              + TM  KPD  I  +LLGAC+    +++ E V K LLELEP N G YV+ S +YA  
Sbjct: 488 WDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANL 547

Query: 552 GRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALL 611
            RWDD A +R  +  KG+ K PGCS I++ S +HEF  GD +H +   I+++LD +   L
Sbjct: 548 RRWDDSARMRMLMKQKGVSKTPGCSWIDINSQLHEFHAGDVLHQEWIEIHQILDLLIDDL 607

Query: 612 EKSGFVPDTS 621
            + G++P+ +
Sbjct: 608 RREGYIPNAN 617


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 252/610 (41%), Positives = 378/610 (61%), Gaps = 12/610 (1%)

Query: 15  LHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAV 74
           L  P S   P +   +    +LL +C +++ +KQ+H+Q++   +H     L K+ ++   
Sbjct: 17  LQKPHSKPNPNRQALSDKFNSLLQQCLSIKQLKQIHAQLLTNSIHKPNSFLYKIADL--- 73

Query: 75  SPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS-SSPVVAIKFYVRMILSGFVPNTYTF 133
               D +YA + F  I +P +  +N +IRG S + +   +A++FY RM   G  PN  T+
Sbjct: 74  ---KDFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTY 130

Query: 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL 193
           PF+  +C+ + A+  G+  H  V++ GL+ D  V  SLI MYA+ G++  AR VF++ S 
Sbjct: 131 PFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQ 190

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
           +D VS+ ++I+GY+   +  +A  LF EM   E  F PNE ++V+VL AC  +G L+LG 
Sbjct: 191 KDLVSWNSMISGYSKMRHAGEAVGLFREM--MEAGFQPNEMSLVSVLGACGELGDLKLGT 248

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTS 313
           WV   +  + +  N  + +ALI MY KCGDLV AR +F+S++K+D ++WN MI GY    
Sbjct: 249 WVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNG 308

Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
             +EA+ LF+ M  S+  P+ +T + +L ACA +GALDLGK +  Y  +   + ++V + 
Sbjct: 309 MSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQ-DDVYVG 367

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG-- 431
           T+L+DMYAKCG++  A +VF GM  K   SWNAMIS LA HG+A +AL+LF  M+ EG  
Sbjct: 368 TALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGT 427

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
           + P+DITFVGVLSAC HAGL+D GR+ F+ M   + + PK++HY CMVDL  RAG  +EA
Sbjct: 428 VSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEA 487

Query: 492 EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA 551
              + TM  KPD  I  +LLGAC+    +++ E V K LLELEP N G YV+ S +YA  
Sbjct: 488 WDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANL 547

Query: 552 GRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALL 611
            RWDD A +R  +  KG+ K PGCS I++ S +HEF  GD +H +   I+++LD +   L
Sbjct: 548 RRWDDSARMRMLMKQKGVSKTPGCSWIDINSQLHEFHAGDVLHQEWIEIHQILDLLIDDL 607

Query: 612 EKSGFVPDTS 621
            + G++P+ +
Sbjct: 608 RREGYIPNAN 617


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 268/706 (37%), Positives = 419/706 (59%), Gaps = 22/706 (3%)

Query: 7    SLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALS 66
            S+ L+P+      ++ P + +L+N             +   +VH+ +I++GL N Q A+ 
Sbjct: 379  SVELNPNSYMIILTAFPEFHVLEN-----------GKRKGSEVHAFLIRSGLLNAQIAIG 427

Query: 67   KLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGF 126
              + I   +  G ++ A +VF  +   + V WN++I G   +   + A+K +  M  +  
Sbjct: 428  NGL-INMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTEL 486

Query: 127  VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARL 186
             P+ +T    L SCA +  IS G+Q+H   LKLGL+ D  V  +L+ +Y + G ++  + 
Sbjct: 487  YPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQK 546

Query: 187  VFNKSSLRDAVSYTALITGYA-SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH 245
             F+     D VS+ +LI   A S   + +A + F  + +    + PN  T +T+L+A + 
Sbjct: 547  AFSLMLDYDHVSWNSLIGALADSEPSMLEAVESF--LVMMRAGWDPNRVTFITILAAVSS 604

Query: 246  MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI-EKRDVISWNV 304
            +   ELG  + +L+    + ++  + NAL+  Y KCGD+    ++F  + +++D +SWN 
Sbjct: 605  LSLHELGKQIHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNS 664

Query: 305  MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
            MI GY H     +A+ +   M+Q     +  TF +VL ACA +  L+ G  +H    +  
Sbjct: 665  MISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRAC 724

Query: 365  QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF 424
             + +++ + ++L+DMYAKCG I  A + F+ M  + L SWN+MISG A HG   K+L LF
Sbjct: 725  LE-SDIVIGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLF 783

Query: 425  SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484
            ++M  +G  PD +TFVGVLSAC+HAGL++ G  +F++M + Y ++P+++H+ CMVDLLGR
Sbjct: 784  AQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGR 843

Query: 485  AGLFDEAEALLKTMEMKPDAAIWTSLLGA-CRVHGR-LELGESVAKHLLELEPENPGAYV 542
             G  ++ E  L  M +KP+  IW ++LGA CR +GR   LG   A+ LLE+EP N   Y+
Sbjct: 844  VGELNKMEDFLNQMPVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNYI 903

Query: 543  LLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYE 602
            LLSNMYA  G+WDDVA  R  +    +KK  GCS + +   VH F+ GDK HP+   IYE
Sbjct: 904  LLSNMYASGGKWDDVAKTRVAMRKAFVKKEAGCSWVTMKDGVHVFVAGDKSHPEKDLIYE 963

Query: 603  MLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTT-IRIV 661
             L E++  +  +G++P+T   LYD++ E KE  LS+HSEK+A+A+ L  T+P    IRI+
Sbjct: 964  KLKELNGKMRLAGYIPETRFALYDLEGESKEELLSYHSEKIAVAFVL--TRPSKMPIRIL 1021

Query: 662  KNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            KNLRVCG+CHSA K IS+I  R+I+ RD NRFHHF++G CSC D+W
Sbjct: 1022 KNLRVCGDCHSAFKYISQIVERQIVLRDSNRFHHFENGKCSCGDFW 1067



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 150/533 (28%), Positives = 255/533 (47%), Gaps = 35/533 (6%)

Query: 3   LPPSSLTL--------SPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQII 54
           LPPSS+ L        S  + H P   D   + L  +   +  SK     + +++H Q+ 
Sbjct: 46  LPPSSIPLQVLVDLYKSSQLHHNPVQHDEKIESLAQRYRYSCGSK-----DAEELHLQLF 100

Query: 55  KTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVA 114
           K G  N  F  + LI I A    GDL     VF+ +   N V W+ +I G++ +  P  A
Sbjct: 101 KNGFVNDLFLCNTLINIYA--RVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEA 158

Query: 115 IKFYVRMILSGFVPNTYTFPFILKSCAKIS--AISEGKQIHAHVLKLGLESDPFVHTSLI 172
            + + +M+  GF+PN Y F  ++++C +     +  G QIH  + K    +D      LI
Sbjct: 159 CELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLI 218

Query: 173 NMYAQN-GELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM--PIREENF 229
           +MY    G ++ AR  F+    R+ VS  ++I+ Y  RG    A  +F  M   +  +  
Sbjct: 219 SMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGL 278

Query: 230 VPNESTVVTVLSACAHMGS--LELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA 287
            PNE T  +++SA   + +  L L   + + +E  G   +L+V +AL+  ++K G +  A
Sbjct: 279 KPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYA 338

Query: 288 RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347
           +++F+ +  R+V+S N +I G       +EA+ LF +M + ++E N  +++ +L A    
Sbjct: 339 KNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEM-KDSVELNPNSYMIILTAFPEF 397

Query: 348 GALDLGKW----IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
             L+ GK     +HA++ ++      +++   LI+MYAKCG I  A  VF  M  K   +
Sbjct: 398 HVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVT 457

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
           WN+MI+GL  + +  +A+  F  M    L P + T +  LS+C   G + +G Q     +
Sbjct: 458 WNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGL 517

Query: 464 Q---DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
           +   D  +S        ++ L G  G   E +     M +  D   W SL+GA
Sbjct: 518 KLGLDLDVSVS----NALLALYGECGYVKECQKAFSLM-LDYDHVSWNSLIGA 565



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 144/294 (48%), Gaps = 16/294 (5%)

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALML 321
           +G  ++L + N LI++Y++ GDL   R +F+ +  R+++SW+ +I GYT      EA  L
Sbjct: 102 NGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACEL 161

Query: 322 FRQMLQSNIEPNDVTFLSVLPACAYLG--ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
           FR+M+     PN   F SV+ AC   G   L  G  IH  + K  Q +N+V+    LI M
Sbjct: 162 FRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKT-QYVNDVTASNVLISM 220

Query: 380 YAKC-GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM----IGEGLQP 434
           Y    G +  A + FD +  + L S N+MIS     G A  A  +FS M    +G+GL+P
Sbjct: 221 YGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKP 280

Query: 435 DDITFVGVLSA-CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
           ++ TF  ++SA C+ A    +  +     ++       L     +V    +AG    A+ 
Sbjct: 281 NEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKN 340

Query: 494 LLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE---NPGAYVLL 544
           + + M  +   ++   ++G  R     + GE   +  +E++     NP +Y+++
Sbjct: 341 IFQKMSYRNVVSLNGLIIGLVRQ----KRGEEAVELFMEMKDSVELNPNSYMII 390


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 276/780 (35%), Positives = 432/780 (55%), Gaps = 85/780 (10%)

Query: 5   PSSLTLSPSI-LHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQF 63
           P+S +L+ ++  H   S   P     N+  L +  K +N+   +Q+  +I          
Sbjct: 26  PASFSLARAVHAHMIASGFKPRGHFLNR-LLEMYCKSSNVVYARQLFEEIPNPD------ 78

Query: 64  ALSKLIEICAVSPFGDLSYALLVFE--TIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRM 121
           A+++   I A    G+L     +F    +   + V +N +I G++ +     A++ +  M
Sbjct: 79  AIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAM 138

Query: 122 ILSGFVPNTYTFPFILKSCAK-ISAISEGKQIHAHVLKLGLES-DPFVHTSLINMYAQNG 179
               F P+ +TF  +L +    +    +  Q+H  V+K G+      V  +L+++Y +  
Sbjct: 139 RRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRA 198

Query: 180 E--------LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP-------- 223
                    + SAR +F++   RD +++T +ITGY     L+ AR++F+ M         
Sbjct: 199 SELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWN 258

Query: 224 ------------------IREENFVP---NESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
                              R+  F+    ++ T  T++SACA++GS ++G  + + I  +
Sbjct: 259 AMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKN 318

Query: 263 GLGSN----LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
            L  N    L V+NALI +Y K   + +AR +F ++  R++I+WN ++ GY +    +EA
Sbjct: 319 ELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEA 378

Query: 319 -------------------------------LMLFRQMLQSNIEPNDVTFLSVLPACAYL 347
                                          L LF+QM     EP D  F   L AC+ L
Sbjct: 379 KSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVL 438

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
           GAL+ G+ +HA +     + +++S+  ++I MYAKCG ++AAE VF  M    L SWN+M
Sbjct: 439 GALENGRQLHAQLVHLGYE-SSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSM 497

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           I+ L  HG   KA+ LF +M+ EG+ PD ITF+ VL+AC+HAGL++ GR YFN+M++ Y 
Sbjct: 498 IAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYG 557

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
           I+P   HY  MVDL  RAG+F  A  ++ +M  KP A +W +LL  CR+HG ++LG   A
Sbjct: 558 ITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAA 617

Query: 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF 587
           + L +L P+N G YVLLSN+YA  GRW+DVA +R  + D+ ++K P CS IEV + VH F
Sbjct: 618 EQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVF 677

Query: 588 LVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAY 647
           +V D VHP+   +Y  L+++   ++K G++PDT  VL+DM+ E KE ALS HSEKLA+ +
Sbjct: 678 MVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGF 737

Query: 648 GLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           G++   P  T+R+ KN+R+CG+CH+A K +SK+  REII RDR RFHHFK+G+CSC DYW
Sbjct: 738 GIMKLPPDATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 134/500 (26%), Positives = 218/500 (43%), Gaps = 110/500 (22%)

Query: 126 FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR 185
            + N Y     L S    ++ S  + +HAH++  G +        L+ MY ++  +  AR
Sbjct: 9   LLANRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYAR 68

Query: 186 LVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPI--------------------- 224
            +F +    DA++ T LIT Y + G L+  R++F+  P+                     
Sbjct: 69  QLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDG 128

Query: 225 ----------REENFVPNESTVVTVLSACAHM--GSLELGNWVCSLIE-GHGLGSNLHVT 271
                     R ++F P++ T  +VLSA         + G   C++++ G G  S+  V 
Sbjct: 129 HSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSS-SVL 187

Query: 272 NALIDMYSK--------CGDLVKARDLFESIEKRDVIS---------------------- 301
           NAL+ +Y K        C  +V AR LF+ + KRD ++                      
Sbjct: 188 NALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFE 247

Query: 302 ---------WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL 352
                    WN MI GY H   ++EAL L R+M    I+ +D+T+ +++ ACA +G+  +
Sbjct: 248 AMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQM 307

Query: 353 GKWIHAYIDKNHQKLNN---VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA--- 406
           GK +HAYI KN    N+   +S+  +LI +Y K   +  A ++F  M  + + +WNA   
Sbjct: 308 GKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILS 367

Query: 407 ----------------------------MISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
                                       MISGLA +G  D+ L LF +M  +G +P D  
Sbjct: 368 GYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFA 427

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
           F G L+AC+  G L+ GRQ  +A +        L     M+ +  + G+ + AE++  TM
Sbjct: 428 FAGALTACSVLGALENGRQ-LHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTM 486

Query: 499 EMKPDAAIWTSLLGACRVHG 518
               D   W S++ A   HG
Sbjct: 487 P-SVDLVSWNSMIAALGQHG 505


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 250/684 (36%), Positives = 410/684 (59%), Gaps = 11/684 (1%)

Query: 28  LQNQPSLALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYAL 84
           + +  ++ +L  C  +  +   +++H+ ++K G   T+F +     +   +  G +  AL
Sbjct: 263 MNSYTTVGVLQVCAELAQLNHGRELHAALLKCG---TEFNIQCNALLVMYARCGWVDSAL 319

Query: 85  LVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS 144
            VF  I + + + WN+++  +  +     AI F+  M+ +GF P+      +L +   + 
Sbjct: 320 RVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLG 379

Query: 145 AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
            +  G+++HA+ +K  L+SD  +  +L++MY +   +E +  VF++  ++D VS+T +I 
Sbjct: 380 RLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIA 439

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
            YA      +A   F     ++E    +   + ++L AC+ + S+ L   V S    +GL
Sbjct: 440 CYAQSSRYSEAIGKF--RTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGL 497

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
             +L + N +ID+Y +CG++  A ++FE ++K+D+++W  M+  +       EA+ LF +
Sbjct: 498 -LDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGK 556

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           ML + I+P+ V  + +L A A L +L  GK IH ++ +    +    + +SL+DMY+ CG
Sbjct: 557 MLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVV-SSLVDMYSGCG 615

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
           ++  A +VFD    K +  W AMI+   MHG   +A+ +F RM+  G+ PD ++F+ +L 
Sbjct: 616 SMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLY 675

Query: 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504
           AC+H+ L+D G+ Y + M+  YK+ P  +HY C+VDLLGR+G  +EA   +K+M ++P +
Sbjct: 676 ACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKS 735

Query: 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564
            +W +LLGACR+H   EL       LLELEP+NPG YVL+SN++A  G+W++V  IRT++
Sbjct: 736 VVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKM 795

Query: 565 NDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSG-FVPDTSEV 623
            ++G++K P CS IE+G+ VH F   D  H  S+ I+  L EI   L + G +V DTS V
Sbjct: 796 TEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEITEKLRREGQYVEDTSFV 855

Query: 624 LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNR 683
           L+D+ EE K   L  HSE+LAI++GLIST  GT +RI KNLRVCG+CH  TKL+SK+F R
Sbjct: 856 LHDVSEEEKIDLLHRHSERLAISFGLISTASGTPLRIAKNLRVCGDCHEFTKLVSKLFER 915

Query: 684 EIIARDRNRFHHFKDGNCSCNDYW 707
           EI+ RD NRFHHF  G CSC D+W
Sbjct: 916 EIVVRDANRFHHFSGGTCSCGDFW 939



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 146/503 (29%), Positives = 263/503 (52%), Gaps = 11/503 (2%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVI-WNNIIRGHS 106
           +VH   +K+GL  +    + L+ + A    G L  AL VFE +R+   V  WN+ I G  
Sbjct: 184 EVHGLAVKSGLDRSTLVANALVGMYA--KCGLLDSALRVFEWMRDGRDVASWNSAISGCV 241

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +   + A+  + RM   GF  N+YT   +L+ CA+++ ++ G+++HA +LK G E +  
Sbjct: 242 QNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFN-I 300

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
              +L+ MYA+ G ++SA  VF +   +D +S+ ++++ Y       +A   F EM   +
Sbjct: 301 QCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMV--Q 358

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
             F P+ + +V++LSA  H+G L  G  V +      L S+L + N L+DMY KC  +  
Sbjct: 359 NGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVEC 418

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           +  +F+ +  +D +SW  +I  Y  +S Y EA+  FR   +  I+ + +   S+L AC+ 
Sbjct: 419 SARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSG 478

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
           L ++ L K +H+Y  +N   L ++ L   +ID+Y +CG +  A  +F+ +  K + +W +
Sbjct: 479 LKSISLLKQVHSYAIRN--GLLDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTS 536

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
           M++  A +G   +A++LF +M+  G+QPD +  VG+L A      L  G++    +I+  
Sbjct: 537 MVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRG- 595

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
           K   +      +VD+    G  + A  +    + K D  +WT+++ A  +HG  +    +
Sbjct: 596 KFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCK-DVVLWTAMINATGMHGHGKQAIYI 654

Query: 527 AKHLLELEPENPGAYVLLSNMYA 549
            K +LE    +P     L+ +YA
Sbjct: 655 FKRMLE-TGVSPDHVSFLALLYA 676



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 157/570 (27%), Positives = 258/570 (45%), Gaps = 46/570 (8%)

Query: 47  KQVHSQIIKTGL---HNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIR 103
           +Q+H+  + TG     +  F  +KL+ +      G L  A  +F+ +       WN +I 
Sbjct: 75  RQLHAHAVATGALGDDDAGFLATKLLFM--YGKCGRLPDAHRLFDGMPARTVFSWNALIG 132

Query: 104 GHSLSSSPVVAIKFYVRMILS----GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKL 159
               S     A+  Y  M  S    G  P+  T   +LK+C        G ++H   +K 
Sbjct: 133 ACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKS 192

Query: 160 GLESDPFVHTSLINMYAQNGELESARLVFN-KSSLRDAVSYTALITGYASRGYLDDARQL 218
           GL+    V  +L+ MYA+ G L+SA  VF      RD  S+ + I+G    G   +A  L
Sbjct: 193 GLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDL 252

Query: 219 FDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMY 278
           F  M  + + F  N  T V VL  CA +  L  G  + + +   G   N+   NAL+ MY
Sbjct: 253 FRRM--QSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQC-NALLVMY 309

Query: 279 SKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
           ++CG +  A  +F  I  +D ISWN M+  Y     Y EA+  F +M+Q+   P+    +
Sbjct: 310 ARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIV 369

Query: 339 SVLPACAYLGALDLGKWIHAYIDKNHQKLN-NVSLWTSLIDMYAKCGNIKAAEQVFDGMG 397
           S+L A  +LG L  G+ +HAY  K  Q+L+ ++ +  +L+DMY KC +++ + +VFD M 
Sbjct: 370 SLLSAVGHLGRLINGREVHAYAVK--QRLDSDLQIANTLMDMYIKCYSVECSARVFDRMR 427

Query: 398 YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
            K   SW  +I+  A   +  +A+  F     EG++ D +    +L AC+    + + +Q
Sbjct: 428 IKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQ 487

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEM--KPDAAIWTSLLGACR 515
             +  I++  +   L++   ++D+ G  G   E    L   EM  K D   WTS++    
Sbjct: 488 VHSYAIRNGLLDLILKNR--IIDIYGECG---EVCYALNIFEMLDKKDIVTWTSMVNCFA 542

Query: 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGC 575
            +G L   E+VA               L   M     + D VA +        +  + G 
Sbjct: 543 ENGLLH--EAVA---------------LFGKMLNAGIQPDSVALVGI------LGAIAGL 579

Query: 576 SSIEVGSVVHEFLVGDKVHPQSKHIYEMLD 605
           SS+  G  +H FL+  K   +   +  ++D
Sbjct: 580 SSLTKGKEIHGFLIRGKFPVEGAVVSSLVD 609



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 128/393 (32%), Positives = 191/393 (48%), Gaps = 11/393 (2%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP---FVHTSLINMYAQNGELESA 184
           P T  + ++L   A   A+SEG+Q+HAH +  G   D    F+ T L+ MY + G L  A
Sbjct: 53  PPTDHYGWVLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDA 112

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE--ENFVPNESTVVTVLSA 242
             +F+    R   S+ ALI    S G   +A  ++  M   E      P+  T+ +VL A
Sbjct: 113 HRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKA 172

Query: 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI-EKRDVIS 301
           C   G    G+ V  L    GL  +  V NAL+ MY+KCG L  A  +FE + + RDV S
Sbjct: 173 CGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVAS 232

Query: 302 WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361
           WN  I G      + EAL LFR+M       N  T + VL  CA L  L+ G+ +HA + 
Sbjct: 233 WNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALL 292

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421
           K   + N      +L+ MYA+CG + +A +VF  +G K   SWN+M+S    +    +A+
Sbjct: 293 KCGTEFNIQC--NALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAI 350

Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481
             F  M+  G  PD    V +LSA  H G L  GR+  +A     ++   LQ    ++D+
Sbjct: 351 DFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGRE-VHAYAVKQRLDSDLQIANTLMDM 409

Query: 482 LGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
             +    + +  +   M +K D   WT+++ AC
Sbjct: 410 YIKCYSVECSARVFDRMRIK-DHVSWTTII-AC 440



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 91/212 (42%), Gaps = 8/212 (3%)

Query: 314 DYKEAL-MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS- 371
           D +EAL  L  +  +    P    +  VL   A   A+  G+ +HA+        ++ + 
Sbjct: 34  DLREALRQLAARSARGRAPPPTDHYGWVLDLVAVRRAVSEGRQLHAHAVATGALGDDDAG 93

Query: 372 -LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE 430
            L T L+ MY KCG +  A ++FDGM  +T+ SWNA+I      G A +A+ ++  M   
Sbjct: 94  FLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRAS 153

Query: 431 ----GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAG 486
               G  PD  T   VL AC   G    G +     ++       L     +V +  + G
Sbjct: 154 EPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLV-ANALVGMYAKCG 212

Query: 487 LFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           L D A  + + M    D A W S +  C  +G
Sbjct: 213 LLDSALRVFEWMRDGRDVASWNSAISGCVQNG 244


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 274/702 (39%), Positives = 408/702 (58%), Gaps = 26/702 (3%)

Query: 13  SILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEIC 72
           S+        P Y+     PS+  L  C  + +  ++H   +K G     +  + LI + 
Sbjct: 141 SLFMLSSGLTPDYRTF---PSV--LKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHL- 194

Query: 73  AVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGF-VPNTY 131
             S +  +  A ++F+ +   +   WN +I G+  S +   A+      + +G    ++ 
Sbjct: 195 -YSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALT-----LSNGLRAMDSV 248

Query: 132 TFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKS 191
           T   +L +C +    + G  IH++ +K GLES+ FV   LI++YA+ G L   + VF++ 
Sbjct: 249 TVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRM 308

Query: 192 SLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL 251
            +RD +S+ ++I  Y        A  LF EM  R     P+  T++++ S  + +G +  
Sbjct: 309 YVRDLISWNSIIKAYELNEQPLRAISLFQEM--RLSRIQPDCLTLISLASILSQLGDIR- 365

Query: 252 GNWVCSLIEGHGLGS-----NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMI 306
               C  ++G  L       ++ + NA++ MY+K G +  AR +F  +   DVISWN +I
Sbjct: 366 ---ACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTII 422

Query: 307 GGYTHTSDYKEALMLFRQMLQS-NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365
            GY       EA+ ++  M +   I  N  T++SVLPAC+  GAL  G  +H  + KN  
Sbjct: 423 SGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGL 482

Query: 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
            L+ V + TSL DMY KCG ++ A  +F  +       WN +I+    HG  +KA+ LF 
Sbjct: 483 YLD-VFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFK 541

Query: 426 RMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485
            M+ EG++PD ITFV +LSAC+H+GL+D G+  F  M  DY I+P L+HYGCMVD+ GRA
Sbjct: 542 EMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRA 601

Query: 486 GLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545
           G  + A   +K+M ++PDA+IW +LL ACRVHG ++LG+  ++HL E+EPE+ G +VLLS
Sbjct: 602 GQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLS 661

Query: 546 NMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLD 605
           NMYA AG+W+ V  IR+  + KG++K PG SS+EV + V  F  G++ HP  + +Y  L 
Sbjct: 662 NMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELT 721

Query: 606 EIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLR 665
            + A L+  G+VPD   VL D++++ KE  L  HSE+LAIA+ LI+T   TTIRI KNLR
Sbjct: 722 ALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLR 781

Query: 666 VCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           VCG+CHS TK ISKI  REII RD NRFHHFK+G CSC DYW
Sbjct: 782 VCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 149/519 (28%), Positives = 268/519 (51%), Gaps = 27/519 (5%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ 95
           L   CTN+Q+ K +H++++ +         +KL+ +      G+++ A   F+ I+  + 
Sbjct: 60  LFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNL--YCYLGNVALARHTFDHIQNRDV 117

Query: 96  VIWNNIIRGHSLSSSPVVAIK-FYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
             WN +I G+  + +    I+ F + M+ SG  P+  TFP +LK+C     + +G +IH 
Sbjct: 118 YAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKAC---RTVIDGNKIHC 174

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
             LK G   D +V  SLI++Y++   + +AR++F++  +RD  S+ A+I+GY   G   +
Sbjct: 175 LALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKE 234

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274
           A  L + +         +  TVV++LSAC   G    G  + S    HGL S L V+N L
Sbjct: 235 ALTLSNGLR------AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKL 288

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
           ID+Y++ G L   + +F+ +  RD+ISWN +I  Y        A+ LF++M  S I+P+ 
Sbjct: 289 IDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDC 348

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           +T +S+    + LG +   + +  +  +    L ++++  +++ MYAK G + +A  VF+
Sbjct: 349 LTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFN 408

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG-LQPDDITFVGVLSACNHAGLLD 453
            +    + SWN +ISG A +G A +A+ +++ M  EG +  +  T+V VL AC+ AG L 
Sbjct: 409 WLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALR 468

Query: 454 I-----GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
                 GR   N +  D  +   L       D+ G+ G  ++A +L   +  + ++  W 
Sbjct: 469 QGMKLHGRLLKNGLYLDVFVVTSL------ADMYGKCGRLEDALSLFYQIP-RVNSVPWN 521

Query: 509 SLLGACRVHGRLELGESVAKHLLE--LEPENPGAYVLLS 545
           +L+     HG  E    + K +L+  ++P++     LLS
Sbjct: 522 TLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLS 560



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 124/464 (26%), Positives = 203/464 (43%), Gaps = 71/464 (15%)

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
           +   K +HA ++      +  +   L+N+Y   G +  AR  F+    RD  ++  +I+G
Sbjct: 67  LQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISG 126

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           Y   G   +  + F  + +      P+  T  +VL AC    ++  GN +  L    G  
Sbjct: 127 YGRAGNSSEVIRCF-SLFMLSSGLTPDYRTFPSVLKACR---TVIDGNKIHCLALKFGFM 182

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALML---F 322
            +++V  +LI +YS+   +  AR LF+ +  RD+ SWN MI GY  + + KEAL L    
Sbjct: 183 WDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGL 242

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
           R M       + VT +S+L AC   G  + G  IH+Y  K H   + + +   LID+YA+
Sbjct: 243 RAM-------DSVTVVSLLSACTEAGDFNRGVTIHSYSIK-HGLESELFVSNKLIDLYAE 294

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFV-- 440
            G ++  ++VFD M  + L SWN++I    ++ +  +A+SLF  M    +QPD +T +  
Sbjct: 295 FGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISL 354

Query: 441 -------GVLSACNHA---------------------------GLLDIGRQYFNAMIQDY 466
                  G + AC                              GL+D  R  FN +    
Sbjct: 355 ASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTD 414

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA----IWTSLLGACRVHGRLEL 522
            IS     +  ++    + G   EA  +   ME + + A     W S+L AC   G L  
Sbjct: 415 VIS-----WNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQ 469

Query: 523 GESVAKHLLELEPENPGAYV------LLSNMYAGAGRWDDVATI 560
           G  +   LL+      G Y+       L++MY   GR +D  ++
Sbjct: 470 GMKLHGRLLK-----NGLYLDVFVVTSLADMYGKCGRLEDALSL 508



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 171/372 (45%), Gaps = 49/372 (13%)

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ-M 325
           N+ ++  L+++Y   G++  AR  F+ I+ RDV +WN+MI GY    +  E +  F   M
Sbjct: 85  NVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFM 144

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
           L S + P+  TF SVL AC  +  +D G  IH    K    + +V +  SLI +Y++   
Sbjct: 145 LSSGLTPDYRTFPSVLKACRTV--ID-GNKIHCLALK-FGFMWDVYVAASLIHLYSRYKA 200

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLS 444
           +  A  +FD M  + + SWNAMISG    G A +AL+L       GL+  D +T V +LS
Sbjct: 201 VGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTL-----SNGLRAMDSVTVVSLLS 255

Query: 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQH----YGCMVDLLGRAGLFDEAEALLKTMEM 500
           AC  AG  + G       I  Y I   L+        ++DL    G   + + +   M +
Sbjct: 256 ACTEAGDFNRG-----VTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYV 310

Query: 501 KPDAAIWTSLLGACRVHGRLELGESVAKHL-----LELEPENPGAYVLLSNMYAGAGRWD 555
           + D   W S++ A       EL E   + +     + L    P    L+S          
Sbjct: 311 R-DLISWNSIIKA------YELNEQPLRAISLFQEMRLSRIQPDCLTLIS---------- 353

Query: 556 DVATIRTRLND-KGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKS 614
            +A+I ++L D +  + V G  ++  G  + +  +G+ V      +Y  L  +D+     
Sbjct: 354 -LASILSQLGDIRACRSVQG-FTLRKGWFLEDITIGNAVVV----MYAKLGLVDSARAVF 407

Query: 615 GFVPDTSEVLYD 626
            ++P+T  + ++
Sbjct: 408 NWLPNTDVISWN 419



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 103/260 (39%), Gaps = 55/260 (21%)

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
           Y   L   K +HA +  + Q + NV +   L+++Y   GN+  A   FD +  + + +WN
Sbjct: 63  YCTNLQSAKCLHARLVVSKQ-IQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWN 121

Query: 406 AMISGLAMHGKADKALSLFSR-MIGEGLQPDDITFVGVLSACN--------HAGLLDIGR 456
            MISG    G + + +  FS  M+  GL PD  TF  VL AC         H   L  G 
Sbjct: 122 LMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNKIHCLALKFG- 180

Query: 457 QYFNAMIQDYKISPKLQHYGCMVDLLGRAG-LFDE----------------------AEA 493
                 + D  ++  L H       +G A  LFDE                       EA
Sbjct: 181 -----FMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEA 235

Query: 494 LLKTMEMKP-DAAIWTSLLGACRVHGRLELGESV----AKHLLELEPENPGAYVLLSN-- 546
           L  +  ++  D+    SLL AC   G    G ++     KH LE E       + +SN  
Sbjct: 236 LTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESE-------LFVSNKL 288

Query: 547 --MYAGAGRWDDVATIRTRL 564
             +YA  GR  D   +  R+
Sbjct: 289 IDLYAEFGRLRDCQKVFDRM 308


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 259/620 (41%), Positives = 384/620 (61%), Gaps = 19/620 (3%)

Query: 3   LPPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQ 62
           LPP  L LS   L+F    +    L   +  L+L+ +C +   +KQ+H+Q++   +    
Sbjct: 10  LPPYHLPLSN--LNFQTQKEHHQTL--TEKLLSLIKQCKSKNLLKQIHAQMLINSIPKPN 65

Query: 63  FALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPV-VAIKFYVRM 121
           F LSK+I++       DL+YA LVF  + +PN   +N ++RG + +       ++ Y ++
Sbjct: 66  FLLSKIIDL------KDLAYASLVFNQLTKPNIYAFNVMLRGLATTWKKYDFCVELYYKL 119

Query: 122 ILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGEL 181
              G   N +T+PF+  +C  +  +  GK  H  V K GL+ D +V+ SLI MYA+ GE+
Sbjct: 120 KSLGLKANNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEM 179

Query: 182 ESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLS 241
             AR VF++   RD VS+ ++I+GY+  G+  +A  LF EM  REE F P+E T+V+VL 
Sbjct: 180 GFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEM--REEGFEPDEMTLVSVLG 237

Query: 242 ACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVIS 301
           AC  +G L LG WV   +    +  N ++ +ALIDMY KCGDL+ AR +F+S+  +DV++
Sbjct: 238 ACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVT 297

Query: 302 WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361
           WN +I GY       EA++LF  M ++   P+ VT + VL AC+ +GALDLGKW+  +  
Sbjct: 298 WNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHAS 357

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421
           +   + ++V + ++LIDMYAKCG++  A +VF+ M +K   SWNAMIS LA HG+A +AL
Sbjct: 358 EKGLQ-HDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEAL 416

Query: 422 SLFSRMIGEG--LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479
           SLF RM  +   +QP+DITF+GVLSAC HAGL+D GRQ F +M   + + PK++HY CMV
Sbjct: 417 SLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSFGLVPKVEHYSCMV 476

Query: 480 DLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG 539
           DL  RAGL  EA  L+K M  KPD  +  SLLGAC+     ++GE V +  LE+E  N G
Sbjct: 477 DLCARAGLLYEAWDLIKKMPGKPDEIVLGSLLGACQRRRNADVGERVIQLFLEMELSNSG 536

Query: 540 AYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKH 599
            YV+ S +YA   RWDD A +R  +   G+ K PGCS I++G+ VHEF  GD +H  S +
Sbjct: 537 NYVISSKIYANMRRWDDSAKMRVLMRQCGVSKTPGCSWIDIGAHVHEFHAGDSLHNHSMN 596

Query: 600 IYEMLDEIDALLEKSGFVPD 619
           IY++L+E    +++ G++P+
Sbjct: 597 IYQLLNE---EMKREGYIPN 613


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 241/610 (39%), Positives = 372/610 (60%), Gaps = 5/610 (0%)

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
           WN ++   S + SP  A++ + R + S   P++ TF   L +CA++  +   + +     
Sbjct: 80  WNALLAARSRAGSPGAALRVF-RALPSSARPDSTTFTLALTACARLGDLDAAEAVRVRAF 138

Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ 217
             G   D FV ++L+++Y++ G +  A  VF+    +D V+++ ++ G+ S G   +A  
Sbjct: 139 AAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALG 198

Query: 218 LFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDM 277
           ++  M  RE     +E  +V V+ AC   G+  +G  V      HG+  ++ +  +L+DM
Sbjct: 199 MYSRM--REHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDM 256

Query: 278 YSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTF 337
           Y+K G    AR +F  +  R+ +SWN +I G+       EAL LFR+M  S ++P+    
Sbjct: 257 YAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGAL 316

Query: 338 LSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG 397
           +S L ACA +G L LGK IH +I +  +      L T+++DMY+KCG++++A ++F+ + 
Sbjct: 317 VSALLACADVGFLKLGKSIHGFILRRLE--FQCILGTAVLDMYSKCGSLESARKLFNKLS 374

Query: 398 YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
            + L  WNAMI+    HG    AL+LF  +   G++PD  TF  +LSA +H+GL++ G+ 
Sbjct: 375 SRDLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKF 434

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
           +F+ MI ++ I P  +H  C+VDLL R+GL +EA  +L +M  +P   IW +LL  C  +
Sbjct: 435 WFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIWVALLSGCLNN 494

Query: 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577
            +LELGE++AK +LE +PE+ G   L+SN+YA A +WD V  IR  + D G KKVPG S 
Sbjct: 495 KKLELGETIAKKILESQPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSL 554

Query: 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALS 637
           IEV    H F++ D+ HPQ + I +M+ ++   + K G+VP T  V +D+DE+ KE  LS
Sbjct: 555 IEVHGTRHAFVMEDQSHPQHQEILKMISKLSFEMRKMGYVPRTEFVYHDLDEDVKEQLLS 614

Query: 638 HHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFK 697
           +HSE+LAIA+GL++T PGT + I+KNLRVCG+CH A K ISKI +REI+ RD  RFHHFK
Sbjct: 615 YHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFK 674

Query: 698 DGNCSCNDYW 707
           DG CSC DYW
Sbjct: 675 DGACSCGDYW 684



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 119/413 (28%), Positives = 206/413 (49%), Gaps = 13/413 (3%)

Query: 37  LSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L+ C  + ++   + V  +    G     F  S L+ +   S  G +  A+ VF+ +   
Sbjct: 118 LTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHV--YSRCGAMGDAIRVFDGMPRK 175

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           + V W+ ++ G   +  PV A+  Y RM   G   +      ++++C        G  +H
Sbjct: 176 DHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVH 235

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
              L+ G+  D  + TSL++MYA+NG  + AR VF     R+AVS+ ALI+G+A  G+ D
Sbjct: 236 GRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHAD 295

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           +A  LF EM        P+   +V+ L ACA +G L+LG  +   I    L     +  A
Sbjct: 296 EALDLFREMST--SGLQPDSGALVSALLACADVGFLKLGKSIHGFIL-RRLEFQCILGTA 352

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           ++DMYSKCG L  AR LF  +  RD++ WN MI          +AL LF+++ ++ I+P+
Sbjct: 353 VLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGIKPD 412

Query: 334 DVTFLSVLPACAYLGALDLGK-WIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
             TF S+L A ++ G ++ GK W    I +   +         ++D+ A+ G ++ A ++
Sbjct: 413 HATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHC-VCVVDLLARSGLVEEANEM 471

Query: 393 FDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
              M  + T+  W A++SG   + K +   ++  +++    QP+DI  + ++S
Sbjct: 472 LASMHTEPTIPIWVALLSGCLNNKKLELGETIAKKILES--QPEDIGVLALVS 522



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 77/355 (21%), Positives = 135/355 (38%), Gaps = 59/355 (16%)

Query: 371 SLWTSLIDMYAKCGNIKAAEQVFDGM--GYKTLASWNAMISGLAMHGKADKALSLFSRMI 428
           +L+ SL   YA+ G + AAE            + +WNA+++  +  G    AL +F R +
Sbjct: 45  NLFPSLAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAARSRAGSPGAALRVF-RAL 103

Query: 429 GEGLQPDDITFVGVLSACNHAGLLDI-------------GRQYF------------NAM- 462
               +PD  TF   L+AC   G LD              GR  F             AM 
Sbjct: 104 PSSARPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMG 163

Query: 463 --IQDYKISPKLQH--YGCMVDLLGRAGLFDEAEALLKTME---MKPDAAIWTSLLGACR 515
             I+ +   P+  H  +  MV     AG   EA  +   M    +  D  +   ++ AC 
Sbjct: 164 DAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACT 223

Query: 516 VHGRLELGESV----AKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
           + G   +G SV     +H + ++     + V   +MYA  G +D    +         + 
Sbjct: 224 LTGNTRMGASVHGRFLRHGMRMDVVIATSLV---DMYAKNGHFDVARQV--------FRM 272

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
           +P  +++   +++  F        Q+ H  E LD     +  SG  PD+  ++  +    
Sbjct: 273 MPYRNAVSWNALISGF-------AQNGHADEALDLFRE-MSTSGLQPDSGALVSALLACA 324

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREII 686
             G L             +  +      ++     CG+  SA KL +K+ +R+++
Sbjct: 325 DVGFLKLGKSIHGFILRRLEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLV 379


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 274/704 (38%), Positives = 408/704 (57%), Gaps = 29/704 (4%)

Query: 13  SILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEIC 72
           S+        P Y+     PS+  L  C N+ +  ++H   +K G     +  + LI + 
Sbjct: 141 SLFMLSSGLQPDYRTF---PSV--LKACRNVTDGNKIHCLALKFGFMWDVYVAASLIHL- 194

Query: 73  AVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFY--VRMILSGFVPNT 130
               +G +  A ++F+ +   +   WN +I G+  S +   A+     +R +      ++
Sbjct: 195 -YCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAM------DS 247

Query: 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK 190
            T   +L +C +    + G  IH++ +K GLES+ FV   LI++YA+ G L+  + VF++
Sbjct: 248 VTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDR 307

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250
             +RD +S+ ++I  Y        A  LF EM  R     P+  T++++ S  + +G + 
Sbjct: 308 MYVRDLISWNSIIKAYELNEQPLRAILLFQEM--RLSRIQPDCLTLISLASILSQLGEIR 365

Query: 251 LGNWVCSLIEGHGLG-----SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVM 305
                C  ++G  L       ++ + NA++ MY+K G +  AR +F  +  +DVISWN +
Sbjct: 366 ----ACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTI 421

Query: 306 IGGYTHTSDYKEALMLFRQMLQS--NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363
           I GY       EA+ ++  M +    I  N  T++SVLPAC+  GAL  G  +H  + KN
Sbjct: 422 ISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKN 481

Query: 364 HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSL 423
              L+ V + TSL DMY KCG +  A  +F  +       WN +I+    HG  +KA+ L
Sbjct: 482 GLYLD-VFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVML 540

Query: 424 FSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLG 483
           F  M+ EG++PD ITFV +LSAC+H+GL+D G   F  M  DY I+P L+HYGCMVDL G
Sbjct: 541 FKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYG 600

Query: 484 RAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVL 543
           RAG  + A   +K+M ++PDA+IW +LL ACRVHG ++LG+  ++HL E+EPE+ G +VL
Sbjct: 601 RAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVL 660

Query: 544 LSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEM 603
           LSNMYA AG+W+ V  IR+  + KG++K PG SS+EV + V  F  G++ HP  + +Y  
Sbjct: 661 LSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRE 720

Query: 604 LDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKN 663
           L  +   L+  G+VPD   VL D++++ KE  L  HSE+LA+A+ LI+T   TTIRI KN
Sbjct: 721 LTALHEKLKMVGYVPDHRFVLQDVEDDEKEHILMSHSERLAMAFALITTPAKTTIRIFKN 780

Query: 664 LRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           LRVCG+CHS TK ISKI  REII RD NRFHHFK+G CSC DYW
Sbjct: 781 LRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 824



 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 153/521 (29%), Positives = 268/521 (51%), Gaps = 28/521 (5%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
            L   CTN+Q+ K +H++++ +         +KL+ +      G+++ A   F+ I   +
Sbjct: 59  TLFRYCTNLQSAKCLHARLVVSNAIQNVCISAKLVNL--YCYLGNVALARYTFDHIHNRD 116

Query: 95  QVIWNNIIRGHSLSSSPVVAIK-FYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
              WN +I G+  +      I+ F + M+ SG  P+  TFP +LK+C     +++G +IH
Sbjct: 117 VYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRN---VTDGNKIH 173

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
              LK G   D +V  SLI++Y + G + +AR++F++   RD  S+ A+I+GY   G   
Sbjct: 174 CLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAK 233

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           +A  L D +         +  TVV++LSAC   G    G  + S    HGL S L V+N 
Sbjct: 234 EALTLSDGLR------AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNK 287

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           LID+Y++ G L   + +F+ +  RD+ISWN +I  Y        A++LF++M  S I+P+
Sbjct: 288 LIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPD 347

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
            +T +S+    + LG +   + +  +  +    L ++++  +++ MYAK G + +A  VF
Sbjct: 348 CLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVF 407

Query: 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG--LQPDDITFVGVLSACNHAGL 451
           + +  K + SWN +ISG A +G A +A+ +++ M  EG  +  +  T+V VL AC+ AG 
Sbjct: 408 NWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGA 467

Query: 452 LDI-----GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
           L       GR   N +  D  +   L       D+ G+ G  D+A +L   +  + ++  
Sbjct: 468 LRQGMKLHGRLLKNGLYLDVFVGTSL------ADMYGKCGRLDDALSLFYQIP-RVNSVP 520

Query: 507 WTSLLGACRVHGRLELGESVAKHLLE--LEPENPGAYVLLS 545
           W +L+     HG  E    + K +L+  ++P++     LLS
Sbjct: 521 WNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLS 561


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 255/664 (38%), Positives = 390/664 (58%), Gaps = 11/664 (1%)

Query: 47   KQVHSQIIKTGL---HNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIR 103
            +Q+H+   K G    +  + AL  L   CA     D+  AL  F      N V+WN ++ 
Sbjct: 409  QQLHAYTTKLGFASNNKIEGALLNLYAKCA-----DIETALDYFLETEVENVVLWNVMLV 463

Query: 104  GHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLES 163
             + L      + + + +M +   VPN YT+P ILK+C ++  +  G+QIH+ ++K   + 
Sbjct: 464  AYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQL 523

Query: 164  DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
            + +V + LI+MYA+ G+L++A  +  + + +D VS+T +I GY    + D A   F +M 
Sbjct: 524  NAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQML 583

Query: 224  IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
             R      +E  +   +SACA + +L+ G  + +     G  S+L   NAL+ +YS+CG 
Sbjct: 584  DR--GIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGK 641

Query: 284  LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
            + ++   FE  E  D I+WN ++ G+  + + +EAL +F +M +  I+ N+ TF S + A
Sbjct: 642  IEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKA 701

Query: 344  CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
             +    +  GK +HA I K     +   +  +LI MYAKCG+I  AE+ F  +  K   S
Sbjct: 702  ASETANMKQGKQVHAVITKTGYD-SETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS 760

Query: 404  WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
            WNA+I+  + HG   +AL  F +MI   ++P+ +T VGVLSAC+H GL+D G  YF +M 
Sbjct: 761  WNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMN 820

Query: 464  QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELG 523
             +Y +SPK +HY C+VD+L RAGL   A+  ++ M +KPDA +W +LL AC VH  +E+G
Sbjct: 821  SEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIG 880

Query: 524  ESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSV 583
            E  A HLLELEPE+   YVLLSN+YA + +WD     R ++ +KG+KK PG S IEV + 
Sbjct: 881  EFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNS 940

Query: 584  VHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKL 643
            +H F VGD+ HP +  I+E   ++     + G+V D   +L ++  E K+  +  HSEKL
Sbjct: 941  IHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKL 1000

Query: 644  AIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSC 703
            AI++GL+S      I ++KNLRVC +CH+  K +SK+ NREII RD  RFHHF+ G CSC
Sbjct: 1001 AISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSC 1060

Query: 704  NDYW 707
             DYW
Sbjct: 1061 KDYW 1064



 Score =  256 bits (653), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 154/477 (32%), Positives = 251/477 (52%), Gaps = 9/477 (1%)

Query: 46  IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           ++Q+H++I+  GL ++    + LI++ + + F DL  A  VF+ +R  +   W  +I G 
Sbjct: 206 VEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDL--ARRVFDGLRLKDHSSWVAMISGL 263

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
           S +     AI+ +  M + G +P  Y F  +L +C KI ++  G+Q+H  VLKLG  SD 
Sbjct: 264 SKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDT 323

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           +V  +L+++Y   G L SA  +F+  S RDAV+Y  LI G +  GY + A +LF  M + 
Sbjct: 324 YVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHL- 382

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
            +   P+ +T+ +++ AC+  G+L  G  + +     G  SN  +  AL+++Y+KC D+ 
Sbjct: 383 -DGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIE 441

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
            A D F   E  +V+ WNVM+  Y    D + +  +FRQM    I PN  T+ S+L  C 
Sbjct: 442 TALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 501

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
            LG L+LG+ IH+ I K + +L N  + + LIDMYAK G +  A  +      K + SW 
Sbjct: 502 RLGDLELGEQIHSQIIKTNFQL-NAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWT 560

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ-YFNAMIQ 464
            MI+G   +   DKAL+ F +M+  G++ D++     +SAC     L  G+Q +  A + 
Sbjct: 561 TMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS 620

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
            +  S  L     +V L  R G  +E+    +  E   + A W +L+   +  G  E
Sbjct: 621 GF--SSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIA-WNALVSGFQQSGNNE 674



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 142/472 (30%), Positives = 243/472 (51%), Gaps = 16/472 (3%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +++HSQI+K GL +      KL +       GDL  A  VF+ + E     WN +I+   
Sbjct: 105 RKLHSQILKLGLDSNGCLSEKLFDFYLFK--GDLYGAFKVFDEMPERTIFTWNKMIK--E 160

Query: 107 LSSSPVVAIKF--YVRMILSGFVPNTYTFPFILKSCAKIS-AISEGKQIHAHVLKLGLES 163
           L+S  ++   F  +VRM+     PN  TF  +L++C   S A    +QIHA +L  GL  
Sbjct: 161 LASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRD 220

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
              V   LI++Y++NG ++ AR VF+   L+D  S+ A+I+G +      +A +LF +M 
Sbjct: 221 STVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMY 280

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
           +     +P      +VLSAC  + SLE+G  +  L+   G  S+ +V NAL+ +Y   G+
Sbjct: 281 VL--GIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGN 338

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           L+ A  +F ++ +RD +++N +I G +     ++A+ LF++M    +EP+  T  S++ A
Sbjct: 339 LISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVA 398

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
           C+  G L  G+ +HAY  K     NN  +  +L+++YAKC +I+ A   F     + +  
Sbjct: 399 CSADGTLFRGQQLHAYTTKLGFASNN-KIEGALLNLYAKCADIETALDYFLETEVENVVL 457

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
           WN M+    +      +  +F +M  E + P+  T+  +L  C   G L++G Q  + +I
Sbjct: 458 WNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII 517

Query: 464 QDYKISPKLQHYGC--MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
              K + +L  Y C  ++D+  + G  D A  +L     K D   WT+++  
Sbjct: 518 ---KTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAG 565



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 140/484 (28%), Positives = 231/484 (47%), Gaps = 49/484 (10%)

Query: 125 GFVPNTYTFPFILKSCAKIS-AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELES 183
           G  PN  T  ++L+ C K + ++ EG+++H+ +LKLGL+S+  +   L + Y   G+L  
Sbjct: 79  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 138

Query: 184 ARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC 243
           A  VF++   R   ++  +I   ASR  + +   LF  M    EN  PNE T   VL AC
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMV--SENVTPNEGTFSGVLEAC 196

Query: 244 AHMG-SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
                + ++   + + I   GL  +  V N LID+YS+ G +  AR +F+ +  +D  SW
Sbjct: 197 RGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSW 256

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
             MI G +      EA+ LF  M    I P    F SVL AC  + +L++G+ +H  + K
Sbjct: 257 VAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLK 316

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALS 422
                ++  +  +L+ +Y   GN+ +AE +F  M  +   ++N +I+GL+  G  +KA+ 
Sbjct: 317 LGFS-SDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAME 375

Query: 423 LFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF----------NAMIQ-------- 464
           LF RM  +GL+PD  T   ++ AC+  G L  G+Q            N  I+        
Sbjct: 376 LFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYA 435

Query: 465 ---------DYKISPKLQH----------YGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
                    DY +  ++++          YG + DL     +F +    ++  E+ P+  
Sbjct: 436 KCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQ----MQIEEIVPNQY 491

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV--LLSNMYAGAGRWDDVATIRTR 563
            + S+L  C   G LELGE +   +++   +   AYV  +L +MYA  G+ D    I  R
Sbjct: 492 TYPSILKTCIRLGDLELGEQIHSQIIKTNFQ-LNAYVCSVLIDMYAKLGKLDTAWDILIR 550

Query: 564 LNDK 567
              K
Sbjct: 551 FAGK 554



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 89/218 (40%), Gaps = 39/218 (17%)

Query: 38  SKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVI 97
           S+  NM+  KQVH+ I KTG  +     + LI + A    G +S A   F  +   N+V 
Sbjct: 703 SETANMKQGKQVHAVITKTGYDSETEVCNALISMYA--KCGSISDAEKQFLEVSTKNEVS 760

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG-KQIHAHV 156
           WN II  +S       A+  + +MI S   PN  T   +L +C+ I  + +G     +  
Sbjct: 761 WNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMN 820

Query: 157 LKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDAR 216
            + GL   P  +  +++M  +                                G L  A+
Sbjct: 821 SEYGLSPKPEHYVCVVDMLTR-------------------------------AGLLSRAK 849

Query: 217 QLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
           +   EMPI+     P+     T+LSAC    ++E+G +
Sbjct: 850 EFIQEMPIK-----PDALVWRTLLSACVVHKNMEIGEF 882


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 255/664 (38%), Positives = 390/664 (58%), Gaps = 11/664 (1%)

Query: 47   KQVHSQIIKTGL---HNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIR 103
            +Q+H+   K G    +  + AL  L   CA     D+  AL  F      N V+WN ++ 
Sbjct: 369  QQLHAYTTKLGFASNNKIEGALLNLYAKCA-----DIETALDYFLETEVENVVLWNVMLV 423

Query: 104  GHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLES 163
             + L      + + + +M +   VPN YT+P ILK+C ++  +  G+QIH+ ++K   + 
Sbjct: 424  AYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQL 483

Query: 164  DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
            + +V + LI+MYA+ G+L++A  +  + + +D VS+T +I GY    + D A   F +M 
Sbjct: 484  NAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQML 543

Query: 224  IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
             R      +E  +   +SACA + +L+ G  + +     G  S+L   NAL+ +YS+CG 
Sbjct: 544  DR--GIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGK 601

Query: 284  LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
            + ++   FE  E  D I+WN ++ G+  + + +EAL +F +M +  I+ N+ TF S + A
Sbjct: 602  IEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKA 661

Query: 344  CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
             +    +  GK +HA I K     +   +  +LI MYAKCG+I  AE+ F  +  K   S
Sbjct: 662  ASETANMKQGKQVHAVITKTGYD-SETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS 720

Query: 404  WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
            WNA+I+  + HG   +AL  F +MI   ++P+ +T VGVLSAC+H GL+D G  YF +M 
Sbjct: 721  WNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMN 780

Query: 464  QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELG 523
             +Y +SPK +HY C+VD+L RAGL   A+  ++ M +KPDA +W +LL AC VH  +E+G
Sbjct: 781  SEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIG 840

Query: 524  ESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSV 583
            E  A HLLELEPE+   YVLLSN+YA + +WD     R ++ +KG+KK PG S IEV + 
Sbjct: 841  EFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNS 900

Query: 584  VHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKL 643
            +H F VGD+ HP +  I+E   ++     + G+V D   +L ++  E K+  +  HSEKL
Sbjct: 901  IHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKL 960

Query: 644  AIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSC 703
            AI++GL+S      I ++KNLRVC +CH+  K +SK+ NREII RD  RFHHF+ G CSC
Sbjct: 961  AISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSC 1020

Query: 704  NDYW 707
             DYW
Sbjct: 1021 KDYW 1024



 Score =  255 bits (652), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 154/477 (32%), Positives = 251/477 (52%), Gaps = 9/477 (1%)

Query: 46  IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           ++Q+H++I+  GL ++    + LI++ + + F DL  A  VF+ +R  +   W  +I G 
Sbjct: 166 VEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDL--ARRVFDGLRLKDHSSWVAMISGL 223

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
           S +     AI+ +  M + G +P  Y F  +L +C KI ++  G+Q+H  VLKLG  SD 
Sbjct: 224 SKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDT 283

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           +V  +L+++Y   G L SA  +F+  S RDAV+Y  LI G +  GY + A +LF  M + 
Sbjct: 284 YVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHL- 342

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
            +   P+ +T+ +++ AC+  G+L  G  + +     G  SN  +  AL+++Y+KC D+ 
Sbjct: 343 -DGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIE 401

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
            A D F   E  +V+ WNVM+  Y    D + +  +FRQM    I PN  T+ S+L  C 
Sbjct: 402 TALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 461

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
            LG L+LG+ IH+ I K + +L N  + + LIDMYAK G +  A  +      K + SW 
Sbjct: 462 RLGDLELGEQIHSQIIKTNFQL-NAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWT 520

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ-YFNAMIQ 464
            MI+G   +   DKAL+ F +M+  G++ D++     +SAC     L  G+Q +  A + 
Sbjct: 521 TMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS 580

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
            +  S  L     +V L  R G  +E+    +  E   + A W +L+   +  G  E
Sbjct: 581 GF--SSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIA-WNALVSGFQQSGNNE 634



 Score =  212 bits (539), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 142/472 (30%), Positives = 243/472 (51%), Gaps = 16/472 (3%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +++HSQI+K GL +      KL +       GDL  A  VF+ + E     WN +I+   
Sbjct: 65  RKLHSQILKLGLDSNGCLSEKLFDFYLFK--GDLYGAFKVFDEMPERTIFTWNKMIK--E 120

Query: 107 LSSSPVVAIKF--YVRMILSGFVPNTYTFPFILKSCAKIS-AISEGKQIHAHVLKLGLES 163
           L+S  ++   F  +VRM+     PN  TF  +L++C   S A    +QIHA +L  GL  
Sbjct: 121 LASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRD 180

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
              V   LI++Y++NG ++ AR VF+   L+D  S+ A+I+G +      +A +LF +M 
Sbjct: 181 STVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMY 240

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
           +     +P      +VLSAC  + SLE+G  +  L+   G  S+ +V NAL+ +Y   G+
Sbjct: 241 VL--GIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGN 298

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           L+ A  +F ++ +RD +++N +I G +     ++A+ LF++M    +EP+  T  S++ A
Sbjct: 299 LISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVA 358

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
           C+  G L  G+ +HAY  K     NN  +  +L+++YAKC +I+ A   F     + +  
Sbjct: 359 CSADGTLFRGQQLHAYTTKLGFASNN-KIEGALLNLYAKCADIETALDYFLETEVENVVL 417

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
           WN M+    +      +  +F +M  E + P+  T+  +L  C   G L++G Q  + +I
Sbjct: 418 WNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII 477

Query: 464 QDYKISPKLQHYGC--MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
              K + +L  Y C  ++D+  + G  D A  +L     K D   WT+++  
Sbjct: 478 ---KTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAG 525



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 140/484 (28%), Positives = 231/484 (47%), Gaps = 49/484 (10%)

Query: 125 GFVPNTYTFPFILKSCAKIS-AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELES 183
           G  PN  T  ++L+ C K + ++ EG+++H+ +LKLGL+S+  +   L + Y   G+L  
Sbjct: 39  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 98

Query: 184 ARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC 243
           A  VF++   R   ++  +I   ASR  + +   LF  M    EN  PNE T   VL AC
Sbjct: 99  AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMV--SENVTPNEGTFSGVLEAC 156

Query: 244 AHMG-SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
                + ++   + + I   GL  +  V N LID+YS+ G +  AR +F+ +  +D  SW
Sbjct: 157 RGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSW 216

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
             MI G +      EA+ LF  M    I P    F SVL AC  + +L++G+ +H  + K
Sbjct: 217 VAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLK 276

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALS 422
                ++  +  +L+ +Y   GN+ +AE +F  M  +   ++N +I+GL+  G  +KA+ 
Sbjct: 277 LGFS-SDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAME 335

Query: 423 LFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF----------NAMIQ-------- 464
           LF RM  +GL+PD  T   ++ AC+  G L  G+Q            N  I+        
Sbjct: 336 LFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYA 395

Query: 465 ---------DYKISPKLQH----------YGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
                    DY +  ++++          YG + DL     +F +    ++  E+ P+  
Sbjct: 396 KCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQ----MQIEEIVPNQY 451

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV--LLSNMYAGAGRWDDVATIRTR 563
            + S+L  C   G LELGE +   +++   +   AYV  +L +MYA  G+ D    I  R
Sbjct: 452 TYPSILKTCIRLGDLELGEQIHSQIIKTNFQ-LNAYVCSVLIDMYAKLGKLDTAWDILIR 510

Query: 564 LNDK 567
              K
Sbjct: 511 FAGK 514



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 89/218 (40%), Gaps = 39/218 (17%)

Query: 38  SKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVI 97
           S+  NM+  KQVH+ I KTG  +     + LI + A    G +S A   F  +   N+V 
Sbjct: 663 SETANMKQGKQVHAVITKTGYDSETEVCNALISMYA--KCGSISDAEKQFLEVSTKNEVS 720

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG-KQIHAHV 156
           WN II  +S       A+  + +MI S   PN  T   +L +C+ I  + +G     +  
Sbjct: 721 WNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMN 780

Query: 157 LKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDAR 216
            + GL   P  +  +++M  +                                G L  A+
Sbjct: 781 SEYGLSPKPEHYVCVVDMLTR-------------------------------AGLLSRAK 809

Query: 217 QLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
           +   EMPI+     P+     T+LSAC    ++E+G +
Sbjct: 810 EFIQEMPIK-----PDALVWRTLLSACVVHKNMEIGEF 842


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 261/642 (40%), Positives = 384/642 (59%), Gaps = 50/642 (7%)

Query: 110 SPVVAIKFYVRMILSGFV---PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
           +P  ++   +R++L   +   P+  ++  I +   + + I  G+Q HA ++  GL+ + F
Sbjct: 54  TPKPSLNLQLRILLQPILQHFPHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAF 113

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD------DARQLFD 220
           +   ++ MYA +G+L+SA +VF++     ++ Y ++I  Y   G         +A     
Sbjct: 114 LAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMH 173

Query: 221 EMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK 280
            + +  +NF     T+  VL +CA +  + +G  V       GL  + +V  +LIDMY K
Sbjct: 174 FLGLLGDNF-----TLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVK 228

Query: 281 CGDLVKAR-------------------------------DLFESIEKRDVISWNVMIGGY 309
           CG +  AR                               DLFE +E R+++SW  MI GY
Sbjct: 229 CGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGY 288

Query: 310 THTSDYKEALMLFRQMLQ--SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
           T     ++AL LF +MLQ  S ++PN VT +SVLPACA   AL+ G+ IH + +     L
Sbjct: 289 TQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHL 348

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY--KTLASWNAMISGLAMHGKADKALSLFS 425
           N+ S+ T+L  MYAKC ++  A   FD +    K L +WN MI+  A HG   +A+S+F 
Sbjct: 349 NS-SVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFE 407

Query: 426 RMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485
            M+  G+QPD +TF+G+LS C+H+GL+D G  +FN M   + + P+++HY C+VDLLGRA
Sbjct: 408 NMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRA 467

Query: 486 GLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545
           G   EA+ L+  M M+   ++W +LL ACR H  LE+ E  A+ L  LEP+N G YVLLS
Sbjct: 468 GRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLS 527

Query: 546 NMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLD 605
           N+YA AG W++V  +R  L  +GMKK PGCS IE+    H F+  DK HPQ+K IY+ L+
Sbjct: 528 NLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLE 587

Query: 606 EIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLR 665
            +   ++ +G++PDTS VL+D+ EE KE  L+ HSEKLAIA+GL++T+PG  +R+ KNLR
Sbjct: 588 ALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLR 647

Query: 666 VCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +CG+CH+ATK ISKI+ REII RD NRFH FKDG+CSC DYW
Sbjct: 648 ICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 689



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 144/467 (30%), Positives = 231/467 (49%), Gaps = 50/467 (10%)

Query: 8   LTLSPSILHFP-PSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALS 66
           + L P + HFP PSS  P            L++   ++  +Q H+QI+  GL    F  +
Sbjct: 65  ILLQPILQHFPHPSSYAPI--------FQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAA 116

Query: 67  KLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRG---HSLSSSPVVAIKFYVRMIL 123
           K++ + A S  GDL  A++VF+ I  P+ +++N+IIR    H         ++ Y RM  
Sbjct: 117 KMVAMYASS--GDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHF 174

Query: 124 SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELES 183
            G + + +T PF+LKSCA +S +  G+ +H   L++GLE D +V  SLI+MY + G +  
Sbjct: 175 LGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGD 234

Query: 184 ARLVFNKSSLRDA-------------------------------VSYTALITGYASRGYL 212
           AR +F+K  +RD                                VS+TA+I+GY   G+ 
Sbjct: 235 ARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFA 294

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           + A  LFDEM        PN  T+V+VL ACA   +LE G  +     G GL  N  V  
Sbjct: 295 EQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQT 354

Query: 273 ALIDMYSKCGDLVKARDLFESIEK--RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
           AL  MY+KC  LV+AR  F+ I +  +++I+WN MI  Y       EA+ +F  ML++ +
Sbjct: 355 ALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGV 414

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           +P+ VTF+ +L  C++ G +D G      +   H     V  +  ++D+  + G +  A+
Sbjct: 415 QPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAK 474

Query: 391 QVFDGMGYKTLAS-WNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           ++   M  +   S W A+++    H   + A     R+    L+PD+
Sbjct: 475 ELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLF--VLEPDN 519


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 254/679 (37%), Positives = 404/679 (59%), Gaps = 16/679 (2%)

Query: 34   LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
            +A+L+ C+N + +   +++HS I+       + +++ ++ +      G ++ A LVF+ +
Sbjct: 441  IAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATML-VSMYGKCGSIAEAELVFKEM 499

Query: 91   REPNQ--VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE 148
              P++  V WN ++  ++ +     A    + M+  G +P+  +F  +L SC       E
Sbjct: 500  PLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSC---YCSQE 556

Query: 149  GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
             + +   +L+ G  S   + T+LI+M+ +  ELE AR VF++    D VS+TA+++  A 
Sbjct: 557  AQVLRMCILESGYRS-ACLETALISMHGRCRELEQARSVFDEMDHGDVVSWTAMVSATAE 615

Query: 209  RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
                 +   LF  M +  E  +P++ T+ T L  C    +L LG  + + +   GL +++
Sbjct: 616  NRDFKEVHHLFRRMQL--EGVIPDKFTLATTLDTCLDSTTLGLGKIIHACVTEIGLEADI 673

Query: 269  HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
             V NAL++MYS CGD  +A   FE+++ RD++SWN+M   Y      KEA++LFR M   
Sbjct: 674  AVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRHMQLE 733

Query: 329  NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
             ++P+ +TF + L        +  GK  H    ++    ++VS+ T L+ +YAKCG +  
Sbjct: 734  GVKPDKLTFSTTLNVSGGSALVSDGKLFHGLAAESGLD-SDVSVATGLVKLYAKCGKLDE 792

Query: 389  AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
            A  +F G    T+   NA+I  LA HG +++A+ +F +M  EG++PD  T V ++SAC H
Sbjct: 793  AISLFRGACQWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGH 852

Query: 449  AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
            AG+++ G   F  M + + ISP L+HY C VDLLGRAG  + AE +++ M  + +  +WT
Sbjct: 853  AGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWT 912

Query: 509  SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568
            SLLG C++ G  ELGE  A+ +LEL+P N  A+V+LSN+Y   G+W D    R +L D+ 
Sbjct: 913  SLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATGKWKDADVDRKKLLDQN 972

Query: 569  MKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
            +K  PG S +E+G  VHEF+ GD+ HPQ+  IY +LD+++ L+ ++G+  D      D +
Sbjct: 973  VKNAPGMSWLEIGKQVHEFVAGDRSHPQTDEIYVVLDKLELLMRRAGYEADKG---LDAE 1029

Query: 629  EEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIAR 688
            +E KE AL +HSE++AIA+GLI+T P TT++IVKNLRVCG+CH+ATK IS I  REII R
Sbjct: 1030 DELKEKALGYHSERIAIAFGLIATPPDTTLKIVKNLRVCGDCHTATKYISMIMGREIIVR 1089

Query: 689  DRNRFHHFKDGNCSCNDYW 707
            D  RFHHF +G CSC D W
Sbjct: 1090 DSLRFHHFSNGTCSCKDCW 1108



 Score =  228 bits (582), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 159/499 (31%), Positives = 253/499 (50%), Gaps = 25/499 (5%)

Query: 31  QPSLALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVF 87
           Q   ALL  C +  ++   K+ H  I   GL    F  + LI +      G L  A  +F
Sbjct: 26  QEYTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINM--YVRCGSLEEAHAIF 83

Query: 88  ETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMIL-SGFVPNTYTFPFILKSCAKISAI 146
             + E N V W  +I  ++ S +   A   +  M+L S   PN+YT   +L +CA    +
Sbjct: 84  SKMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDL 143

Query: 147 SEGKQIHAHVLKLGLESDP----FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
           + G+ IHA + +LGLE +      V  ++INMYA+ G  E A  VF     +D VS+TA+
Sbjct: 144 AIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAM 203

Query: 203 ITGYAS-RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
              YA  R +  DA ++F EM +  +   PN  T +T L AC    SL  G W+ SL+  
Sbjct: 204 AGAYAQERRFYPDALRIFREMLL--QPLAPNVITFITALGACT---SLRDGTWLHSLLHE 258

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR---DVISWNVMIGGYTHTSDYKEA 318
            GLG +    NALI+MY KCGD   A  +F+++  R   D++SWN MI        + +A
Sbjct: 259 AGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDA 318

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG--KWIHAYIDKNHQKLNNVSLWTSL 376
           + +FR++    + PN VT +++L A A  G +D G  +  H  I ++   L +V +  ++
Sbjct: 319 MAIFRRLRLEGMRPNSVTLITILNALAASG-VDFGAARKFHGRIWESGY-LRDVVVGNAI 376

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKT-LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           I MYAKCG   AA  VF  + +K  + SWN M+          K ++ F  M+  G+ P+
Sbjct: 377 ISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPN 436

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
            ++F+ +L+AC+++  LD GR+  + ++   +   +      +V + G+ G   EAE + 
Sbjct: 437 KVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSIAEAELVF 496

Query: 496 KTMEMKPDAAI-WTSLLGA 513
           K M +   + + W  +LGA
Sbjct: 497 KEMPLPSRSLVTWNVMLGA 515



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 163/566 (28%), Positives = 260/566 (45%), Gaps = 48/566 (8%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLH--NTQFALSKLIEICAVSPFGDLSYALLVFE 88
           +A+L+ C N +++   + +H+ I + GL   +T   L     I   +  G    A+ VF 
Sbjct: 131 VAMLNACANSRDLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFL 190

Query: 89  TIREPNQVIWNNIIRGHSLSSSPVV-AIKFYVRMILSGFVPNTYTFPFILKSCAKISAIS 147
           TI E + V W  +   ++        A++ +  M+L    PN  TF   L +C   +++ 
Sbjct: 191 TIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGAC---TSLR 247

Query: 148 EGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR---DAVSYTALIT 204
           +G  +H+ + + GL  DP    +LINMY + G+ E A  VF   + R   D VS+ A+I+
Sbjct: 248 DGTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMIS 307

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG-SLELGNWVCSLIEGHG 263
                G   DA  +F  +  R E   PN  T++T+L+A A  G            I   G
Sbjct: 308 ASVEAGRHGDAMAIFRRL--RLEGMRPNSVTLITILNALAASGVDFGAARKFHGRIWESG 365

Query: 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLF 322
              ++ V NA+I MY+KCG    A  +F  I  K DVISWN M+G       + + +  F
Sbjct: 366 YLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTF 425

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
             ML + I+PN V+F+++L AC+   ALD G+ IH+ I    +     S+ T L+ MY K
Sbjct: 426 HHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGK 485

Query: 383 CGNIKAAEQVFDGMGY--KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFV 440
           CG+I  AE VF  M    ++L +WN M+   A + ++ +A      M+  G+ PD ++F 
Sbjct: 486 CGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFT 545

Query: 441 GVLSACNHAGLLDIGRQ------YFNAMIQDYKIS---------------PKLQH----- 474
            VLS+C  +    + R       Y +A ++   IS                ++ H     
Sbjct: 546 SVLSSCYCSQEAQVLRMCILESGYRSACLETALISMHGRCRELEQARSVFDEMDHGDVVS 605

Query: 475 YGCMVDLLGRAGLFDEAEALLKTMEMK---PDAAIWTSLLGACRVHGRLELGESVAKHLL 531
           +  MV        F E   L + M+++   PD     + L  C     L LG+ +   + 
Sbjct: 606 WTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGLGKIIHACVT 665

Query: 532 ELEPENPGAYV-LLSNMYAGAGRWDD 556
           E+  E   A    L NMY+  G W +
Sbjct: 666 EIGLEADIAVENALLNMYSNCGDWRE 691



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 158/332 (47%), Gaps = 12/332 (3%)

Query: 237 VTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK 296
             +L +C     L  G     LI   GL  +L + N LI+MY +CG L +A  +F  +E+
Sbjct: 29  TALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEE 88

Query: 297 RDVISWNVMIGGYTHTSDYKEALMLFRQM-LQSNIEPNDVTFLSVLPACAYLGALDLGKW 355
           R+V+SW  +I     +  +  A  LFR M L+S+  PN  T +++L ACA    L +G+ 
Sbjct: 89  RNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRS 148

Query: 356 IHAYIDK---NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLA 412
           IHA I +     +      +  ++I+MYAKCG+ + A  VF  +  K + SW AM    A
Sbjct: 149 IHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGAYA 208

Query: 413 MHGK-ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK 471
              +    AL +F  M+ + L P+ ITF+  L AC    L D    + ++++ +  +   
Sbjct: 209 QERRFYPDALRIFREMLLQPLAPNVITFITALGACT--SLRD--GTWLHSLLHEAGLGFD 264

Query: 472 LQHYGCMVDLLGRAGLFDEAEALLKTMEMKP--DAAIWTSLLGACRVHGRLELGESVAKH 529
                 ++++ G+ G ++ A  + K M  +   D   W +++ A    GR     ++ + 
Sbjct: 265 PLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRR 324

Query: 530 LLELEPENPGAYVLLSNMYAGAGRWDDVATIR 561
            L LE   P +  L++ + A A    D    R
Sbjct: 325 -LRLEGMRPNSVTLITILNALAASGVDFGAAR 355


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 250/611 (40%), Positives = 370/611 (60%), Gaps = 35/611 (5%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P+   +  ++ +C +   +  GK++HAH           +   LI+MYA+ G L  A+++
Sbjct: 61  PSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQML 120

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
           F++   +D  S+  +I+GYA+ G ++ AR+LFDEMP R+ NF  N + +   +S   +M 
Sbjct: 121 FDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRD-NFSWN-AVISGYVSQGWYME 178

Query: 248 SLELGNWV-------CSL---------------------IEGHGLGSNLH----VTNALI 275
           +L+L   +       C++                     I G+ + S L     V  AL+
Sbjct: 179 ALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALL 238

Query: 276 DMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV 335
           D+Y KCG L +AR +F+ +  +D++SW  MI         KE   LFR ++ S + PN+ 
Sbjct: 239 DLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEY 298

Query: 336 TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
           TF  VL ACA L A  +GK +H Y+ +      + +  ++L+ +Y+KCGN + A +VF+ 
Sbjct: 299 TFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAA-SALVHVYSKCGNTETARRVFNQ 357

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
           M    L SW ++I G A +G+ D AL  F  ++  G +PD+ITFVGVLSAC HAGL+DIG
Sbjct: 358 MPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIG 417

Query: 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACR 515
            +YF+++ + + +     HY C++DLL R+G F EAE ++  M MKPD  +W SLLG CR
Sbjct: 418 LEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCR 477

Query: 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGC 575
           +HG +EL E  AK L ELEPENP  Y+ LSN+YA AG W +   +R  ++++G+ K PG 
Sbjct: 478 IHGNIELAERAAKALFELEPENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGK 537

Query: 576 SSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGA 635
           S IE+   VH FLVGD  HP+   I+E L E+   +++ G+V DT+ VL+D++EE KE  
Sbjct: 538 SWIEIKRQVHVFLVGDTSHPKISDIHEYLGELSKKMKEEGYVADTNFVLHDVEEEQKEQN 597

Query: 636 LSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHH 695
           + +HSEKLA+A+G+IST PGT I++ KNLR C +CH+A K ISKI  R+II RD NRFH 
Sbjct: 598 IFYHSEKLAVAFGIISTSPGTPIKVFKNLRTCVDCHNAMKYISKIVQRKIIVRDSNRFHC 657

Query: 696 FKDGNCSCNDY 706
           F DG+CSC DY
Sbjct: 658 FVDGSCSCKDY 668



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 140/264 (53%), Gaps = 6/264 (2%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K++H  +I++GL   +   + L+++      G L+ A  +F+ + + + V W  +I    
Sbjct: 216 KEIHGYLIRSGLELDEVVWTALLDL--YGKCGSLNEARGIFDQMADKDIVSWTTMIHRCF 273

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
                      +  ++ SG  PN YTF  +L +CA ++A   GK++H ++ ++G +   F
Sbjct: 274 EDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSF 333

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
             ++L+++Y++ G  E+AR VFN+    D VS+T+LI GYA  G  D A Q F+ +    
Sbjct: 334 AASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESL--LR 391

Query: 227 ENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
               P+E T V VLSAC H G +++G  +  S+ E HGL         +ID+ ++ G   
Sbjct: 392 SGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFK 451

Query: 286 KARDLFESIE-KRDVISWNVMIGG 308
           +A ++ +++  K D   W  ++GG
Sbjct: 452 EAENIIDNMPMKPDKFLWASLLGG 475


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 259/706 (36%), Positives = 415/706 (58%), Gaps = 38/706 (5%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L++ +K  +  N  Q+H  IIK       F  + L+   A    G+L  A  VF+ + E 
Sbjct: 140 LSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYA--ECGELDCARKVFDEMSER 197

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMIL-SGFVPNTYTFPFILKSCAKISAISEGKQI 152
           N V W ++I G++       A+  + RM+     +PN+ T   ++ +CAK+  +  G+++
Sbjct: 198 NVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKV 257

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           +  +   G+E +  + ++L++MY +   ++ A+ +F++    +     A+ + Y  +G  
Sbjct: 258 YDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLT 317

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
            +A  + + M   +    P+  ++++ +S+C+ + ++  G      +  +G  S  ++ N
Sbjct: 318 KEALGVLNLM--MDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICN 375

Query: 273 ALIDMYSKC-------------------------------GDLVKARDLFESIEKRDVIS 301
           ALIDMY KC                               G++  A + F ++ +++++S
Sbjct: 376 ALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVS 435

Query: 302 WNVMIGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           WN +I      + Y+EA+ +F  M  Q  +  + VT +S+  AC +LGALDL KWI+ YI
Sbjct: 436 WNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYI 495

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
           +KN  +L+ V L T+L+DM+++CG+ ++A  +F+ +  + +++W A I  +AM G  ++A
Sbjct: 496 EKNRIQLD-VRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERA 554

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
           + LF+ MI +GL+PD + F+G L+AC H GL+  G++ FN+M + + +SP+  HYGCMVD
Sbjct: 555 IELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVD 614

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540
           LLGRAGL +EA  L+K M  +P+  IW SLL ACRV G +E+    A+ +  L PE  G+
Sbjct: 615 LLGRAGLLEEALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPERTGS 674

Query: 541 YVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHI 600
           YVLLSN+YA AGRW+D+A +R  + +KG++K PG S I++    HEF  GD+ HP+ + I
Sbjct: 675 YVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSVIQIRGKTHEFTSGDESHPEMRKI 734

Query: 601 YEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRI 660
             MLDE+       G VPD S VL D+DE+ K   LS HSEKLA+A+GLIS+  GTTIRI
Sbjct: 735 EAMLDELSQRASDLGHVPDLSNVLMDVDEQEKIFMLSRHSEKLAMAFGLISSNKGTTIRI 794

Query: 661 VKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDY 706
           VKNLRVC  CHS  K  SK++NREII RD NRFH  + G CSC+D+
Sbjct: 795 VKNLRVCSYCHSFAKFASKVYNREIILRDNNRFHFIRQGKCSCSDF 840



 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 170/544 (31%), Positives = 273/544 (50%), Gaps = 41/544 (7%)

Query: 1   MALPPSSLTLSPSILHFPPSSDP-PYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLH 59
           MA+  + L  SP +L    S    P +  + + + + L  C  +  +K  H  + K GL 
Sbjct: 1   MAMLGNFLHFSPMVLAISTSKPSLPNQSKRTKATPSSLKNCKTIDELKMFHLSLTKQGLD 60

Query: 60  NTQFALSKLI-EICAVSPFGDLSYALLVFETIREPNQV-IWNNIIRGHSLSSSPVVAIKF 117
           +   A++KL+   C +     LS+A  VFE         ++N++IRG++ S     AI  
Sbjct: 61  DDVSAITKLVARSCELGTRESLSFAKEVFENGESYGTCFMYNSLIRGYASSGLCKEAILL 120

Query: 118 YVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ 177
           ++RM+ SG  P+ YTFPF L  CAK      G QIH  ++K+    D FV  SL++ YA+
Sbjct: 121 FIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAE 180

Query: 178 NGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVV 237
            GEL+ AR VF++ S R+ VS+T++I GYA R +  DA  LF  M +R+E+ +PN  T+V
Sbjct: 181 CGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRM-VRDEDVIPNSVTMV 239

Query: 238 TVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR 297
            V+SACA +  LE G  V   I   G+  N  + +AL+DMY KC  +  A+ LF+     
Sbjct: 240 CVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGAS 299

Query: 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357
           ++   N M   Y      KEAL +   M+ S I P+ ++ LS + +C+ L  +  GK  H
Sbjct: 300 NLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCH 359

Query: 358 AYIDKN-HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGK 416
            Y+ +N  +  +N+    +LIDMY KC     A ++FD M  KT+ +WN++++G   +G+
Sbjct: 360 GYVLRNGFESWDNIC--NALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGE 417

Query: 417 ADKALSLFSRM--------------------------------IGEGLQPDDITFVGVLS 444
            D A   F+ M                                  E +  D +T + + S
Sbjct: 418 VDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIAS 477

Query: 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504
           AC H G LD+ + +    I+  +I   ++    +VD+  R G  + A ++  ++  + D 
Sbjct: 478 ACGHLGALDLAK-WIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNR-DV 535

Query: 505 AIWT 508
           + WT
Sbjct: 536 SAWT 539


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 246/591 (41%), Positives = 369/591 (62%), Gaps = 51/591 (8%)

Query: 126 FVPNTYTFPFILKSCAKISAISEGKQ--------IHAHVLKLGLES-DPFVHTSLINMYA 176
            + N+++    +++ A +SA     +        +HA  LK G  + D FV T+L+  YA
Sbjct: 27  LLDNSFSLSLAMQASAALSASVPAMRDLGLGAASLHARALKSGFAAADLFVRTALVEAYA 86

Query: 177 QNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTV 236
           + G  + AR  F+++  RD      ++  Y +RG + +AR++FD M  RE + V      
Sbjct: 87  KAGRADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAEARRVFDGM--RERDMV------ 138

Query: 237 VTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK 296
                           +W                 N +I  Y+  G++  AR++F  ++ 
Sbjct: 139 ----------------SW-----------------NTMIHGYAVNGEVDLAREVFNGMDD 165

Query: 297 RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
           RD  SW+ M+  YT     K+AL L+R+M  + + P+  T +SVL AC+ +GAL +G  +
Sbjct: 166 RDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEV 225

Query: 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGK 416
           H +++ N  +L+ V L T+LIDMYAKCG+I+ + +VF  M  K + +W++MI GLA HG 
Sbjct: 226 HQFVESNGVELD-VKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGF 284

Query: 417 ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG 476
              ALSLFSRM+ EGLQP+++TF+GVL +C H GL+  G++YF++M   + ++PK+QHYG
Sbjct: 285 GHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYG 344

Query: 477 CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536
           CMVDLLGR+G  +EA+ L++ M  +PDA IW +LLGACR++  +E+ E     L  L+P 
Sbjct: 345 CMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPH 404

Query: 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQ 596
             G YVLLSN+YA A  W+ VA +R  L  + ++++PG SSIE  + +HEF+ GD+ HP+
Sbjct: 405 ADGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQNTIHEFISGDRSHPR 464

Query: 597 SKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGT 656
           SK IY+ML E+   L ++G+ P T  VL D+DE+ KE AL+ HSEKLA+A+GL++T  G+
Sbjct: 465 SKEIYKMLGEMMDRLRQAGYKPMTGLVLQDIDEQSKERALAEHSEKLAVAFGLLTTPAGS 524

Query: 657 TIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           T+RI KNLR C +CHSA KLI+ ++ R++I RDRNRFHHF +G CSC DYW
Sbjct: 525 TLRITKNLRACEDCHSAIKLIALLYERKLIIRDRNRFHHFSEGRCSCKDYW 575



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 139/282 (49%), Gaps = 38/282 (13%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRM----------ILSGFV 127
           G+++ A  VF+ +RE + V WN +I G++++    +A + +  M          ++S + 
Sbjct: 120 GEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYT 179

Query: 128 ---------------------PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
                                P+  T   +L +C+ + A++ G ++H  V   G+E D  
Sbjct: 180 KGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVK 239

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           + T+LI+MYA+ G++E++  VF+   ++D ++++++I G A+ G+  DA  LF  M    
Sbjct: 240 LGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRML--S 297

Query: 227 ENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
           E   PNE T + VL +C H+G +  G  +  S+   HG+   +     ++D+  + G + 
Sbjct: 298 EGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIE 357

Query: 286 KARDLFESIE-KRDVISWNVMIGG---YTHTSDYKEALMLFR 323
           +A+ L   +  + D + W  ++G    Y +    +EA+   R
Sbjct: 358 EAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLR 399


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 256/677 (37%), Positives = 401/677 (59%), Gaps = 8/677 (1%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSY---ALLVFETI 90
           L++L  C N + ++  H + ++  +  T F L   +    ++ +        A  VF  +
Sbjct: 265 LSILDACVNPETLQ--HGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRM 322

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
           ++ N + W+ II   +       A++++  M   G +PN  TF  +L      S + E  
Sbjct: 323 KQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELS 382

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           +IH  + + GL+    +  +L+N+Y +    + AR VF++  L + +S+ ++I  Y    
Sbjct: 383 RIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCE 442

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
             DDA QLF  M  +++   P+    +T+L AC           V   +E  GLG +  V
Sbjct: 443 RHDDALQLFRTM--QQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLV 500

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
             +L++MY+K G+L  A  + + ++++ + +WNV+I GY      +EAL  ++++    I
Sbjct: 501 QTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAI 560

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
             + VTF+SVL AC    +L  GK IH+   +     ++V +  +L +MY+KCG+++ A 
Sbjct: 561 PVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLD-SDVIVKNALTNMYSKCGSMENAR 619

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           ++FD M  ++  SWN M+   A HG++++ L L  +M  EG++ + ITFV VLS+C+HAG
Sbjct: 620 RIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAG 679

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L+  G QYF+++  D  I  K +HYGC+VDLLGRAG   EAE  +  M ++P    W SL
Sbjct: 680 LIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASL 739

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           LGACRV   L+ G+  A  LLEL+P N  A V+LSN+Y+  G W + A +R  +  + +K
Sbjct: 740 LGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVK 799

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           KVPG SSI+V + VHEF V D  HP++  IY+ ++E+   + ++G+VPDT  VL+D+DEE
Sbjct: 800 KVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEE 859

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KE  L++HSEKLAIA+GLIST   +++ I KNLRVC +CH+ATK ISKI  REI+ RD 
Sbjct: 860 QKESLLAYHSEKLAIAFGLISTPETSSLHIFKNLRVCEDCHTATKFISKITGREIVVRDN 919

Query: 691 NRFHHFKDGNCSCNDYW 707
           +RFHHF+DG+CSC DYW
Sbjct: 920 HRFHHFRDGSCSCKDYW 936



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 156/531 (29%), Positives = 255/531 (48%), Gaps = 44/531 (8%)

Query: 75  SPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFP 134
           S  G L  A+  F  IR  N V WN +I  +S   S   A+  +  M+L G  PN  T  
Sbjct: 3   SRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLV 62

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
            +L SC     + +G  +HA  L+ G   +  V T+L+NMY + G L  A+ VF + + +
Sbjct: 63  AVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEK 122

Query: 195 DAVSYTALITGYASRGYL-DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
           + V++ A++  Y+ +G     A +LF  M +  E    N  T + VL++     +L  G 
Sbjct: 123 NVVTWNAMLGVYSLQGCCWKLAVELFTRMLL--EGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTS 313
           ++ S +       ++ V  AL++ Y+KCG L  AR +F+ +  R V +WN MI  Y+ + 
Sbjct: 181 FIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISE 240

Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
              EA  +F++M Q     + VTFLS+L AC     L  GK +   I +   +L ++ + 
Sbjct: 241 RSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFEL-DLFVG 299

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
           T+LI MYA+C + + A QVF  M    L +W+A+I+  A HG   +AL  F  M  EG+ 
Sbjct: 300 TALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGIL 359

Query: 434 PDDITFVGVLSA-CNHAGLLDIGRQYF--------------NAMIQDYKIS--------- 469
           P+ +TF+ +L+     +GL ++ R +               NA++  Y            
Sbjct: 360 PNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTV 419

Query: 470 ------PKLQHYGCMVDLLGRAGLFDEAEALLKTME---MKPDAAIWTSLLGACRV--HG 518
                 P L  +  M+ +  +    D+A  L +TM+   ++PD   + ++LGAC +  HG
Sbjct: 420 FDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHG 479

Query: 519 RLE--LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
           R    + + V +  L     +P     L NMYA AG  D    I   ++++
Sbjct: 480 RTRKLVHQCVEESGL---GGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQ 527



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 117/401 (29%), Positives = 212/401 (52%), Gaps = 13/401 (3%)

Query: 174 MYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
           MY++ G L  A   F K   R+ VS+  +I+ Y+S     +A  LF  M +  E   PN 
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLL--EGVAPNA 58

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
            T+V VL++C     L  G  V +L    G   N  V  AL++MY KCG L+ A+ +FE 
Sbjct: 59  ITLVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEE 118

Query: 294 IEKRDVISWNVMIGGYT-HTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL 352
           + +++V++WN M+G Y+     +K A+ LF +ML   ++ N +TFL+VL +     AL  
Sbjct: 119 MAEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRK 178

Query: 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLA 412
           GK+IH+ + ++   L +V + T+L++ Y KCG++  A +VFDGM  +++ +WN+MIS  +
Sbjct: 179 GKFIHSCVRESEHSL-DVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYS 237

Query: 413 MHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL 472
           +  ++ +A  +F RM  EG + D +TF+ +L AC +   L  G+ +    I +      L
Sbjct: 238 ISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGK-HVRESISETSFELDL 296

Query: 473 QHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
                ++ +  R    ++A  +   M+ + +   W++++ A   HG    GE++ ++   
Sbjct: 297 FVGTALITMYARCRSPEDAAQVFGRMK-QTNLITWSAIITAFADHG--HCGEAL-RYFRM 352

Query: 533 LEPE----NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
           ++ E    N   ++ L N +      ++++ I   + + G+
Sbjct: 353 MQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGL 393


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 256/660 (38%), Positives = 389/660 (58%), Gaps = 8/660 (1%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           VH  ++K G        + LI   A S    +  AL+VF+ + + + + WN+II G + +
Sbjct: 6   VHGYLVKYGFGAQCAVCNALISFYAKS--NRIEDALMVFDEMPQRDIISWNSIIGGCASN 63

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVH 168
                A++ +VRM L G   ++ T   ++ +C +      G  +H + ++ GL S+  + 
Sbjct: 64  GLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLG 123

Query: 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
            +L++MY+   +  S   +F     ++ VS+TA+IT Y   G+ D    LF EM +  E 
Sbjct: 124 NALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGL--EG 181

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288
             P+   + + L A A   SL+ G  V      +G+   L V NAL++MY KCG + +AR
Sbjct: 182 IRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEAR 241

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
            +F+ + K+D ISWN +IGGY+ ++   EA  LF +ML   + PN VT   +LPA A L 
Sbjct: 242 FIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLL-QLRPNAVTMACILPAAASLS 300

Query: 349 ALDLGKWIHAY-IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
           +L+ G+ +HAY + + + + N V+   +L+DMY KCG +  A ++FD +  K L SW  M
Sbjct: 301 SLERGREMHAYAVRRGYLEDNFVA--NALVDMYVKCGALLLARRLFDMLTNKNLISWTIM 358

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           I+G  MHG+   A++LF +M G G+QPD  +F  +L AC+H+GL D G ++FNAM  +++
Sbjct: 359 IAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHR 418

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
           I PKL+HY CMVDLL   G   EA   ++TM ++PD++IW SLL  CR+H  ++L E VA
Sbjct: 419 IEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVA 478

Query: 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF 587
           + + ELEPEN G YVLL+N+YA A RW+ V  ++ ++  +G+++  GCS IEV    H F
Sbjct: 479 EMVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAHIF 538

Query: 588 LVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAY 647
              ++ HPQ   I E LD++   +++ G  P     L   D+   + AL  HS KLA+A+
Sbjct: 539 FAENRNHPQGMRIAEFLDDVARRMQEEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAF 598

Query: 648 GLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           G+++   G  IR+ KN RVC +CH A K ISK+  REII RD NRFHHF++G CSC  YW
Sbjct: 599 GVLNLSQGRPIRVTKNSRVCSHCHEAAKFISKMCGREIILRDSNRFHHFEEGRCSCRGYW 658



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 187/372 (50%), Gaps = 6/372 (1%)

Query: 148 EGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA 207
           +G  +H +++K G  +   V  +LI+ YA++  +E A +VF++   RD +S+ ++I G A
Sbjct: 2   DGLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCA 61

Query: 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
           S G  D A +LF  M +  +    + +T+++V+ AC       +G  V       GL S 
Sbjct: 62  SNGLYDKAVELFVRMWLEGQEL--DSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISE 119

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
             + NAL+DMYS C D      +F ++E+++V+SW  MI  YT    + +   LF++M  
Sbjct: 120 TSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGL 179

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
             I P+     S L A A   +L  GK +H Y  +N  +   + +  +L++MY KCG ++
Sbjct: 180 EGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIE-EVLPVANALMEMYVKCGYME 238

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
            A  +FD +  K   SWN +I G +    A++A +LF+ M+ + L+P+ +T   +L A  
Sbjct: 239 EARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAA 297

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
               L+ GR+     ++   +         +VD+  + G    A  L   +  K +   W
Sbjct: 298 SLSSLERGREMHAYAVRRGYLEDNFVA-NALVDMYVKCGALLLARRLFDMLTNK-NLISW 355

Query: 508 TSLLGACRVHGR 519
           T ++    +HGR
Sbjct: 356 TIMIAGYGMHGR 367


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 273/711 (38%), Positives = 403/711 (56%), Gaps = 66/711 (9%)

Query: 52  QIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSP 111
           +++    + + F +S+   I   S  G +  A +VF+ +R+ N + WN+I+ G+  +  P
Sbjct: 86  RLVLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRP 145

Query: 112 VVAIKFYVRM----------ILSGFV-----------------PNTYTFPFILKSCAKIS 144
             A   + +M          ++SG++                  N  ++  +++   K  
Sbjct: 146 QEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEG 205

Query: 145 AISEG---------KQIHAHVLKLG------------------LESDPFVHTSLINMYAQ 177
            ISE          K + +  + LG                   E D    T++I  Y Q
Sbjct: 206 MISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQ 265

Query: 178 NGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVV 237
            G L  AR++F++   R+ VS+T +ITGY     +D AR+LF+ MP +      NE +  
Sbjct: 266 VGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEK------NEVSWT 319

Query: 238 TVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR 297
            +L    + G L+  +    L     + S +   NA+I  + + G++ KAR +F+ + ++
Sbjct: 320 AMLKGYTNCGRLDEAS---ELFNAMPIKS-VVACNAMILCFGQNGEVPKARQVFDQMREK 375

Query: 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357
           D  +W+ MI  Y       +AL LFR M +  I PN  + +SVL  CA L  LD G+ IH
Sbjct: 376 DEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIH 435

Query: 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA 417
           A + ++   L+ V + + L+ MY KCGN+  A+QVFD    K +  WN++I+G A HG  
Sbjct: 436 AQLVRSQFDLD-VYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLG 494

Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
            +AL +F  M   G+ PDD+TFVGVLSAC++ G +  G + FN+M   Y++  K++HY C
Sbjct: 495 VEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYAC 554

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537
           MVDLLGRAG  +EA  L++ M M+ DA IW +LLGACR H +L+L E  AK LL LEP+N
Sbjct: 555 MVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKN 614

Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKV-HPQ 596
            G ++LLSN+YA  GRWDDVA +R  + D+ + K PGCS I V   VH+F  GD   HP+
Sbjct: 615 AGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPE 674

Query: 597 SKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGT 656
              I  +L+ +  LL ++G+ PD S VL+D+DEE K  +L +HSEKLA+AYGL+    G 
Sbjct: 675 HSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGM 734

Query: 657 TIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            IR++KNLRVCG+CH+A KLI+K+  REII RD NRFHHFKDG+CSC DYW
Sbjct: 735 PIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 192/426 (45%), Gaps = 40/426 (9%)

Query: 117 FYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHT--SLINM 174
            + R++L+ F    Y   FI+   + I+  S   QI    +      D  + +  S++  
Sbjct: 83  MFFRLVLNRF----YCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAG 138

Query: 175 YAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR--------- 225
           Y QN   + A+ +F+K S R+ +S+  L++GY + G +++AR++FD MP R         
Sbjct: 139 YFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMV 198

Query: 226 ----EENFVPNESTVV------TVLSACAHMGS-LELG--NWVCSLIEGHGLGSNLHVTN 272
               +E  +    T+        V+S    +G  L+ G  +  C L +       +  TN
Sbjct: 199 RGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTN 258

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            +I  Y + G LV+AR LF+ + +R+V+SW  MI GY        A  LF  M     E 
Sbjct: 259 -MIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVM----PEK 313

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N+V++ ++L      G LD    +      N   + +V    ++I  + + G +  A QV
Sbjct: 314 NEVSWTAMLKGYTNCGRLDEASELF-----NAMPIKSVVACNAMILCFGQNGEVPKARQV 368

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           FD M  K   +W+AMI      G    AL LF  M  EG++P+  + + VLS C     L
Sbjct: 369 FDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANL 428

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           D GR+    +++  +    +     ++ +  + G   +A+ +     +K D  +W S++ 
Sbjct: 429 DHGREIHAQLVRS-QFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVK-DVVMWNSIIT 486

Query: 513 ACRVHG 518
               HG
Sbjct: 487 GYAQHG 492


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 253/578 (43%), Positives = 367/578 (63%), Gaps = 10/578 (1%)

Query: 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN---GELESARLVFNK 190
           P +L S  K +++ E  QI A+ +K  +E   FV   LIN   ++     +  AR +F  
Sbjct: 32  PILLIS--KCNSLRELMQIQAYAIKSHIEDVSFV-AKLINFCTESPTESSMSYARHLFEA 88

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250
            S  D V + ++  GY+      +   LF E  I E+  +P+  T  ++L ACA   +LE
Sbjct: 89  MSEPDIVIFNSMARGYSRFTNPLEVFSLFVE--ILEDGILPDNYTFPSLLKACAVAKALE 146

Query: 251 LGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYT 310
            G  +  L    GL  N++V   LI+MY++C D+  AR +F+ I +  V+ +N MI GY 
Sbjct: 147 EGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYA 206

Query: 311 HTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNV 370
             +   EAL LFR+M    ++PN++T LSVL +CA LG+LDLGKWIH Y  K H     V
Sbjct: 207 RRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYA-KKHSFCKYV 265

Query: 371 SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE 430
            + T+LIDM+AKCG++  A  +F+ M YK   +W+AMI   A HGKA+K++ +F RM  E
Sbjct: 266 KVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSE 325

Query: 431 GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
            +QPD+ITF+G+L+AC+H G ++ GR+YF+ M+  + I P ++HYG MVDLL RAG  ++
Sbjct: 326 NVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLED 385

Query: 491 AEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAG 550
           A   +  + + P   +W  LL AC  H  L+L E V++ + EL+  + G YV+LSN+YA 
Sbjct: 386 AYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYAR 445

Query: 551 AGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDAL 610
             +W+ V ++R  + D+   KVPGCSSIEV +VVHEF  GD V   +  ++  LDE+   
Sbjct: 446 NKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKE 505

Query: 611 LEKSGFVPDTSEVLY-DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGN 669
           L+ SG+VPDTS V++ +M+++ KE  L +HSEKLAI +GL++T PGTTIR+VKNLRVC +
Sbjct: 506 LKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRD 565

Query: 670 CHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           CH+A KLIS IF R+++ RD  RFHHF+DG CSC D+W
Sbjct: 566 CHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603



 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 132/403 (32%), Positives = 239/403 (59%), Gaps = 5/403 (1%)

Query: 28  LQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF-GDLSYALLV 86
           +  Q  + L+SKC +++ + Q+ +  IK+ + +  F ++KLI  C  SP    +SYA  +
Sbjct: 27  VNTQNPILLISKCNSLRELMQIQAYAIKSHIEDVSF-VAKLINFCTESPTESSMSYARHL 85

Query: 87  FETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAI 146
           FE + EP+ VI+N++ RG+S  ++P+     +V ++  G +P+ YTFP +LK+CA   A+
Sbjct: 86  FEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKAL 145

Query: 147 SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGY 206
            EG+Q+H   +KLGL+ + +V  +LINMY +  +++SAR VF++      V Y A+ITGY
Sbjct: 146 EEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGY 205

Query: 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS 266
           A R   ++A  LF EM  + +   PNE T+++VLS+CA +GSL+LG W+    + H    
Sbjct: 206 ARRNRPNEALSLFREM--QGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCK 263

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML 326
            + V  ALIDM++KCG L  A  +FE +  +D  +W+ MI  Y +    ++++++F +M 
Sbjct: 264 YVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMR 323

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
             N++P+++TFL +L AC++ G ++ G+   + +      + ++  + S++D+ ++ GN+
Sbjct: 324 SENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNL 383

Query: 387 KAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMI 428
           + A +  D +    T   W  +++  + H   D A  +  R+ 
Sbjct: 384 EDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIF 426


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 273/711 (38%), Positives = 403/711 (56%), Gaps = 66/711 (9%)

Query: 52  QIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSP 111
           +++    + + F +S+   I   S  G +  A +VF+ +R+ N + WN+I+ G+  +  P
Sbjct: 86  RLVLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRP 145

Query: 112 VVAIKFYVRM----------ILSGFV-----------------PNTYTFPFILKSCAKIS 144
             A   + +M          ++SG++                  N  ++  +++   K  
Sbjct: 146 QEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEG 205

Query: 145 AISEG---------KQIHAHVLKLG------------------LESDPFVHTSLINMYAQ 177
            ISE          K + +  + LG                   E D    T++I  Y Q
Sbjct: 206 MISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQ 265

Query: 178 NGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVV 237
            G L  AR++F++   R+ VS+T +ITGY     +D AR+LF+ MP +      NE +  
Sbjct: 266 VGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEK------NEVSWT 319

Query: 238 TVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR 297
            +L    + G L+  +    L     + S +   NA+I  + + G++ KAR +F+ + ++
Sbjct: 320 AMLKGYTNCGRLDEAS---ELFNAMPIKS-VVACNAMILCFGQNGEVPKARQVFDQMREK 375

Query: 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357
           D  +W+ MI  Y       +AL LFR M +  I PN  + +SVL  CA L  LD G+ IH
Sbjct: 376 DEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIH 435

Query: 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA 417
           A + ++   L+ V + + L+ MY KCGN+  A+QVFD    K +  WN++I+G A HG  
Sbjct: 436 AQLVRSQFDLD-VYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLG 494

Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
            +AL +F  M   G+ PDD+TFVGVLSAC++ G +  G + FN+M   Y++  K++HY C
Sbjct: 495 VEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYAC 554

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537
           MVDLLGRAG  +EA  L++ M M+ DA IW +LLGACR H +L+L E  AK LL LEP+N
Sbjct: 555 MVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKN 614

Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKV-HPQ 596
            G ++LLSN+YA  GRWDDVA +R  + D+ + K PGCS I V   VH+F  GD   HP+
Sbjct: 615 AGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPE 674

Query: 597 SKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGT 656
              I  +L+ +  LL ++G+ PD S VL+D+DEE K  +L +HSEKLA+AYGL+    G 
Sbjct: 675 HSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGM 734

Query: 657 TIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            IR++KNLRVCG+CH+A KLI+K+  REII RD NRFHHFKDG+CSC DYW
Sbjct: 735 PIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 192/426 (45%), Gaps = 40/426 (9%)

Query: 117 FYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHT--SLINM 174
            + R++L+ F    Y   FI+   + I+  S   QI    +      D  + +  S++  
Sbjct: 83  MFFRLVLNRF----YCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAG 138

Query: 175 YAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR--------- 225
           Y QN   + A+ +F+K S R+ +S+  L++GY + G +++AR++FD MP R         
Sbjct: 139 YFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMV 198

Query: 226 ----EENFVPNESTVV------TVLSACAHMGS-LELG--NWVCSLIEGHGLGSNLHVTN 272
               +E  +    T+        V+S    +G  L+ G  +  C L +       +  TN
Sbjct: 199 RGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTN 258

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            +I  Y + G LV+AR LF+ + +R+V+SW  MI GY        A  LF  M     E 
Sbjct: 259 -MIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVM----PEK 313

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N+V++ ++L      G LD    +      N   + +V    ++I  + + G +  A QV
Sbjct: 314 NEVSWTAMLKGYTNCGRLDEASELF-----NAMPIKSVVACNAMILCFGQNGEVPKARQV 368

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           FD M  K   +W+AMI      G    AL LF  M  EG++P+  + + VLS C     L
Sbjct: 369 FDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANL 428

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           D GR+    +++  +    +     ++ +  + G   +A+ +     +K D  +W S++ 
Sbjct: 429 DHGREIHAQLVRS-QFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVK-DVVMWNSIIT 486

Query: 513 ACRVHG 518
               HG
Sbjct: 487 GYAQHG 492


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 262/689 (38%), Positives = 404/689 (58%), Gaps = 29/689 (4%)

Query: 37  LSKCTNMQNIK---QVHSQIIKTGLH---NTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           L  C + ++++   ++H  ++ + L        AL  + + C     G LS+A  VF  +
Sbjct: 152 LGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKC-----GSLSHAKRVFAKM 206

Query: 91  REPNQVI-WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG 149
                VI W+ +   H+L  +   A++ +  M+L G          IL +C+  + + +G
Sbjct: 207 ERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG 266

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK--SSLRDAVSYTALITGYA 207
           + IH+ +   G ES+  V  +++ MY + G +E AR VF+    +LRD VS+  +++ Y 
Sbjct: 267 RLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYV 326

Query: 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
                 DA QL+  M +R      ++ T V++LSAC+    + LG  +   I    L  N
Sbjct: 327 HNDRGKDAIQLYQRMQLR-----ADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKN 381

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
           + V NAL+ MY+KCG   +AR +F+ +E+R +ISW  +I  Y       EA  LF+QML+
Sbjct: 382 VIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLE 441

Query: 328 -------SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMY 380
                    ++P+ + F+++L ACA + AL+ GK +           ++ ++ T+++++Y
Sbjct: 442 LEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLS-SDKAVGTAVVNLY 500

Query: 381 AKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439
            KCG I+   ++FDG+  +  +  WNAMI+  A  G++ +AL LF RM  EG++PD  +F
Sbjct: 501 GKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSF 560

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYK-ISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
           V +L AC+H GL D G+ YF +M  +Y+ ++  +QH+GC+ DLLGR G   EAE  L+ +
Sbjct: 561 VSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKL 620

Query: 499 EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVA 558
            +KPDA  WTSLL ACR H  L+  + VA  LL LEP     YV LSN+YA   +W  VA
Sbjct: 621 PVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVA 680

Query: 559 TIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVP 618
            +R  + ++G+KK  G S+IE+G  +H+F  GD  HP+++ I E L ++ + +++ G+VP
Sbjct: 681 KVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVP 740

Query: 619 DTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLIS 678
           DT  VL+ +DE+ KE  L  HSE+LAIA GLIST  GT +R+ KNLRVC +CH+ATKLIS
Sbjct: 741 DTKMVLHFVDEQEKERLLFSHSERLAIALGLISTPLGTPLRVTKNLRVCSDCHTATKLIS 800

Query: 679 KIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           KI  R+I+ RD  RFH FKDG CSC DYW
Sbjct: 801 KIAGRKIVVRDPTRFHLFKDGKCSCQDYW 829



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 151/546 (27%), Positives = 264/546 (48%), Gaps = 46/546 (8%)

Query: 29  QNQPSLALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPF------GD 79
           +N     LL +C   Q +   +++HS  +K  L      L   I    VS +      GD
Sbjct: 42  ENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHI----VSMYAHCDSPGD 97

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKS 139
              A   F+ + + N   W  ++   ++S      ++   RM   G  P+  TF   L S
Sbjct: 98  AKAA---FDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGS 154

Query: 140 CAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK-SSLRDAVS 198
           C    ++ +G +IH  V+   LE DP V  +L+NMY + G L  A+ VF K    R+ +S
Sbjct: 155 CGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVIS 214

Query: 199 YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           ++ +   +A  G + +A + F  M +        +S +VT+LSAC+    ++ G  + S 
Sbjct: 215 WSIMAGAHALHGNVWEALRHFRFMLLL--GIKATKSAMVTILSACSSPALVQDGRLIHSC 272

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK--RDVISWNVMIGGYTHTSDYK 316
           I   G  S L V NA++ MY +CG + +AR +F+++++  RDV+SWN+M+  Y H    K
Sbjct: 273 IALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGK 332

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           +A+ L+++M    +  + VT++S+L AC+    + LG+ +H  I  N +   NV +  +L
Sbjct: 333 DAIQLYQRM---QLRADKVTYVSLLSACSSAEDVGLGRVLHKQI-VNDELEKNVIVGNAL 388

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMI-------G 429
           + MYAKCG+   A  VFD M  +++ SW  +IS         +A  LF +M+        
Sbjct: 389 VSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSS 448

Query: 430 EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG----CMVDLLGRA 485
           + ++PD + FV +L+AC     L+ G+     M+ +   S  L         +V+L G+ 
Sbjct: 449 QRVKPDALAFVTILNACADVSALEQGK-----MVSEQAASCGLSSDKAVGTAVVNLYGKC 503

Query: 486 GLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHL--LELEPENPGAYVL 543
           G  +E   +   +  +PD  +W +++    V+ +        K    +E+E   P ++  
Sbjct: 504 GEIEEGRRIFDGVCSRPDVQLWNAMIA---VYAQFGQSHEALKLFWRMEMEGVRPDSFSF 560

Query: 544 LSNMYA 549
           +S + A
Sbjct: 561 VSILLA 566



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 95/191 (49%), Gaps = 5/191 (2%)

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           +   + T+  +L  CA   AL  G+ IH+   K++    N+ L   ++ MYA C +   A
Sbjct: 39  VRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSPGDA 98

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
           +  FD +  + L SW  +++  A+ G++ + L    RM  +G++PD +TF+  L +C   
Sbjct: 99  KAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDP 158

Query: 450 GLLDIGRQYFNAMIQDYK--ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
             L  G +  + M+ D +  I PK+ +   ++++  + G    A+ +   ME   +   W
Sbjct: 159 ESLRDGIR-IHQMVVDSRLEIDPKVSN--ALLNMYKKCGSLSHAKRVFAKMERTRNVISW 215

Query: 508 TSLLGACRVHG 518
           + + GA  +HG
Sbjct: 216 SIMAGAHALHG 226


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 272/739 (36%), Positives = 410/739 (55%), Gaps = 71/739 (9%)

Query: 35  ALLSKCTNMQN---IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           +LL  C   QN    K++H  I+KT      F  + LI   A    G+L+YA  VF+ I 
Sbjct: 10  SLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLIT--AYYKLGNLAYAHHVFDHIP 67

Query: 92  EPNQVIWNNI-------------------------------IRGHSLSSSPVVAIKFYVR 120
           +PN   WN I                               I G++   S   A++ Y  
Sbjct: 68  QPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKL 127

Query: 121 MILSGFVP-NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ-- 177
           M+    +  N  TF  +L  C+K   +  G+QI+  +LK G  SD FV + L++MY +  
Sbjct: 128 MLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLG 187

Query: 178 -----------------------------NGELESARLVFNKSSLRDAVSYTALITGYAS 208
                                         G +E ++ +F     RD++S+T +ITG   
Sbjct: 188 LIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQ 247

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
            G   +A  +F EM  R   F  ++ T  +VL+AC  + +L  G  + + +       N+
Sbjct: 248 NGLEREALDMFREM--RLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNV 305

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
            V +AL+DMYSKC  +  A  +F+ + +++VISW  M+ GY      +EA+ +F +M ++
Sbjct: 306 FVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRN 365

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            +EP+D T  SV+ +CA L +L+ G   H     +   ++ +++  +LI +Y KCG+ + 
Sbjct: 366 GVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGL-ISFITVSNALITLYGKCGSTEN 424

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           + ++F  M  +   SW A+++G A  GKA++ + LF RM+  GL+PD +TF+GVLSAC+ 
Sbjct: 425 SHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSR 484

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
           AGL++ G QYF +MI+++ I P + H  C++DLLGRAG  +EA   +  M   PD   W 
Sbjct: 485 AGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWA 544

Query: 509 SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568
           +LL +CRVHG +E+G+  A  L+ LEP+NP +YVLLS++YA  G+WD VA +R  + DK 
Sbjct: 545 TLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKR 604

Query: 569 MKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
           ++K PG S I+    VH F   D+  P    IY  L++++  + + G+VPD S VL+D++
Sbjct: 605 VRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVLHDVE 664

Query: 629 EEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIAR 688
           E  K   L+HHSEKLAIA+GLI   PG  IR++KNLRVCG+CH+ATK ISKI  REI+ R
Sbjct: 665 ESEKIKMLNHHSEKLAIAFGLIFVPPGLPIRVIKNLRVCGDCHNATKFISKITQREILVR 724

Query: 689 DRNRFHHFKDGNCSCNDYW 707
           D  RFH FKDG CSC D+W
Sbjct: 725 DAVRFHLFKDGTCSCGDFW 743


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 259/610 (42%), Positives = 365/610 (59%), Gaps = 43/610 (7%)

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ-NGELESARLVFNKSSL 193
           F+L SC     I   KQ+HA ++  GL   P     L+   +     +  A +VF+    
Sbjct: 6   FLLSSCKSFRQI---KQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHFPQ 62

Query: 194 RDAVSYTALITGYA-SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH-MGSLEL 251
            D   Y  +I   A S     D+   F  + IREE  VPN+ +       C   +G LE 
Sbjct: 63  PDLFLYNTIIKVLAFSTTSSADSFTKFRSL-IREERLVPNQYSFAFAFKGCGSGVGVLE- 120

Query: 252 GNWVCSLIEGHGLGSNLHVTNALIDMY-------------------------------SK 280
           G  V       GL +NL VTNALI MY                               ++
Sbjct: 121 GEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYAR 180

Query: 281 CGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSV 340
            G + +AR LF+ + ++DV+SW  MI G      + EAL +F  ML   + PN+ T  S 
Sbjct: 181 LGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASS 240

Query: 341 LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-- 398
           L ACA L ALD G+W+H YI KN+ ++N   L   LIDMYAKCG ++ A ++F+      
Sbjct: 241 LAACANLVALDQGRWMHVYIKKNNIQMNE-RLLAGLIDMYAKCGELEFASKLFNSNPRLK 299

Query: 399 KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQY 458
           + +  WNAMI G A+HGK+ +A+ +F +M  E + P+ +TFV +L+AC+H   ++ GR Y
Sbjct: 300 RKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYY 359

Query: 459 FNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           F +M   Y++ P+L+HYGC+VDLLGRAG   EAE ++ +M + PD AIW +LL AC++H 
Sbjct: 360 FESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKIHK 419

Query: 519 RLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSI 578
             E+GE V K + EL+P + G +VLL+N+Y+  G W++  T+R ++ + G KK PGCSSI
Sbjct: 420 DAEMGERVGKIVKELDPNHLGCHVLLANIYSLTGNWNEARTLREKIAESGKKKTPGCSSI 479

Query: 579 EVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE-EWKEGALS 637
           E+  + H+FLVGD+ HPQ+K +Y  LDE+   L+ +G++P++ EVL D+D+ E +E AL 
Sbjct: 480 ELNGMFHQFLVGDRSHPQTKQLYLFLDEMITKLKIAGYIPESGEVLLDIDDNEDRETALL 539

Query: 638 HHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFK 697
            HSEKLAIA+GL++T P T IRIVKNLRVC +CH A K ISK+++REII RDR R+HHFK
Sbjct: 540 KHSEKLAIAFGLMNTTPKTPIRIVKNLRVCSDCHLAIKFISKVYDREIIVRDRIRYHHFK 599

Query: 698 DGNCSCNDYW 707
           DG CSCNDYW
Sbjct: 600 DGTCSCNDYW 609



 Score =  231 bits (589), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 139/417 (33%), Positives = 221/417 (52%), Gaps = 35/417 (8%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ 95
           LLS C + + IKQVH+++I TGL       +KL++  + S F  +SYA +VF+   +P+ 
Sbjct: 7   LLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLS-SIFAPISYAHMVFDHFPQPDL 65

Query: 96  VIWNNIIR--GHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
            ++N II+    S +SS     KF   +     VPN Y+F F  K C     + EG+Q+ 
Sbjct: 66  FLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEGEQVR 125

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
            H +KLGLE++ FV  +LI MY     +  AR VF+ S  RD  S+  +++GYA  G +D
Sbjct: 126 VHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMD 185

Query: 214 DARQLFDEMPIRE-----------------------------ENFVPNESTVVTVLSACA 244
           +ARQLFDEMP ++                             +   PNE T+ + L+ACA
Sbjct: 186 EARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACA 245

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE--KRDVISW 302
           ++ +L+ G W+   I+ + +  N  +   LIDMY+KCG+L  A  LF S    KR V  W
Sbjct: 246 NLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPW 305

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
           N MIGG+      KEA+ +F QM    + PN VTF+++L AC++   ++ G++    +  
Sbjct: 306 NAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMAS 365

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKAD 418
           +++    +  +  L+D+  + G +K AE++   M     +A W A++S   +H  A+
Sbjct: 366 HYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKIHKDAE 422


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/661 (37%), Positives = 388/661 (58%), Gaps = 5/661 (0%)

Query: 47   KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
            +Q+H+   K G  +       L+ + A     D+  AL  F      N V+WN ++  + 
Sbjct: 392  QQLHAYTTKLGFASNDKIEGALLNLYA--KCSDIETALNYFLETEVENVVLWNVMLVAYG 449

Query: 107  LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            L      + + + +M +   VPN YT+P ILK+C ++  +  G+QIH+ ++K   + + +
Sbjct: 450  LLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAY 509

Query: 167  VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
            V + LI+MYA+ G+L++A  +  + + +D VS+T +I GY    + D A   F +M  R 
Sbjct: 510  VCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDR- 568

Query: 227  ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
                 +E  +   +SACA + +L+ G  + +     G  S+L   NAL+ +YSKCG++ +
Sbjct: 569  -GIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEE 627

Query: 287  ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
            A   FE  E  D I+WN ++ G+  + + +EAL +F +M +  I+ N+ TF S + A + 
Sbjct: 628  AYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASE 687

Query: 347  LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
               +  GK +HA I K     +   +  ++I MYAKCG+I  A++ F  +  K   SWNA
Sbjct: 688  TANMKQGKQVHAVITKTGYD-SETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNA 746

Query: 407  MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
            MI+  + HG   +AL  F +MI   ++P+ +T VGVLSAC+H GL+D G +YF +M  +Y
Sbjct: 747  MINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEY 806

Query: 467  KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
             ++PK +HY C+VD+L RAGL   A+  +  M ++PDA +W +LL AC VH  +E+GE  
Sbjct: 807  GLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFA 866

Query: 527  AKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHE 586
            A HLLELEPE+   YVLLSN+YA   +WD     R ++ +KG+KK PG S IEV + +H 
Sbjct: 867  AHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHS 926

Query: 587  FLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIA 646
            F VGD+ HP +  I+E   ++     + G+V D   +L ++ +E K+  +  HSEKLAI+
Sbjct: 927  FYVGDQNHPLADEIHEYFKDLTKRASEIGYVQDCFSLLSELQQEQKDPTIFIHSEKLAIS 986

Query: 647  YGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDY 706
            +GL+S      I ++KNLRVC +CH   K +SK+ NREII RD  RFHHF+ G CSC DY
Sbjct: 987  FGLLSLPATMPINVMKNLRVCNDCHDWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDY 1046

Query: 707  W 707
            W
Sbjct: 1047 W 1047



 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 153/477 (32%), Positives = 248/477 (51%), Gaps = 9/477 (1%)

Query: 46  IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           ++Q+H++II  GL  +    + LI++ + + F D   A  VF+ +   +   W  +I G 
Sbjct: 189 VEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVD--RARRVFDGLYLKDHSSWVAMISGL 246

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
           S +   V AI+ +  M + G +P  Y F  +L +C KI ++  G+Q+H  VLKLG  SD 
Sbjct: 247 SKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDT 306

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           +V  +L+++Y   G L SA  +F+  S RDAV+Y  LI G +  GY + A +LF  M + 
Sbjct: 307 YVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQL- 365

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
            +   P+ +T+ +++ AC+  G+L  G  + +     G  SN  +  AL+++Y+KC D+ 
Sbjct: 366 -DGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIE 424

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
            A + F   E  +V+ WNVM+  Y    D + +  +FRQM    I PN  T+ S+L  C 
Sbjct: 425 TALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 484

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
            LG L+LG+ IH+ I K   +L N  + + LIDMYAK G +  A  +      K + SW 
Sbjct: 485 RLGDLELGEQIHSQIIKTSFQL-NAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWT 543

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ-YFNAMIQ 464
            MI+G   +   DKAL+ F +M+  G++ D++     +SAC     L  G+Q +  A + 
Sbjct: 544 TMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS 603

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
            +  S  L     +V L  + G  +EA    +  E   + A W +L+   +  G  E
Sbjct: 604 GF--SSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIA-WNALVSGFQQSGNNE 657



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 139/470 (29%), Positives = 238/470 (50%), Gaps = 12/470 (2%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +++HSQI+K G  N      KL++       GDL  AL VF+ + E     WN +I+  +
Sbjct: 88  RKLHSQILKLGFDNNACLSEKLLDFYLFK--GDLDGALKVFDEMPERTIFTWNKMIKELA 145

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS-AISEGKQIHAHVLKLGLESDP 165
             S        + RM+     PN  TF  +L++C   S A    +QIHA ++  GL    
Sbjct: 146 SRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKST 205

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
            V   LI++Y++NG ++ AR VF+   L+D  S+ A+I+G +      +A +LF +M + 
Sbjct: 206 IVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVL 265

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
               +P      +VLSAC  + SLE+G  +  L+   G  S+ +V NAL+ +Y   G L+
Sbjct: 266 --GIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLI 323

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
            A  +F ++ +RD +++N +I G +     ++A+ LF++M    +EP+  T  S++ AC+
Sbjct: 324 SAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACS 383

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
             G L  G+ +HAY  K     N+  +  +L+++YAKC +I+ A   F     + +  WN
Sbjct: 384 SDGTLFSGQQLHAYTTKLGFASND-KIEGALLNLYAKCSDIETALNYFLETEVENVVLWN 442

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
            M+    +      +  +F +M  E + P+  T+  +L  C   G L++G Q  + +I  
Sbjct: 443 VMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII-- 500

Query: 466 YKISPKLQHYGC--MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
            K S +L  Y C  ++D+  + G  D A  +L     K D   WT+++  
Sbjct: 501 -KTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAG 548



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 137/484 (28%), Positives = 232/484 (47%), Gaps = 49/484 (10%)

Query: 125 GFVPNTYTFPFILKSCAKIS-AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELES 183
           G  PN  T  ++L+ C K + ++ EG+++H+ +LKLG +++  +   L++ Y   G+L+ 
Sbjct: 62  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDG 121

Query: 184 ARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC 243
           A  VF++   R   ++  +I   ASR        LF  M    EN  PNE T   VL AC
Sbjct: 122 ALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMV--NENVTPNEGTFSGVLEAC 179

Query: 244 AHMG-SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
                + ++   + + I   GLG +  V N LID+YS+ G + +AR +F+ +  +D  SW
Sbjct: 180 RGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSW 239

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
             MI G +      EA+ LF  M    I P    F SVL AC  + +L++G+ +H  + K
Sbjct: 240 VAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLK 299

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALS 422
                ++  +  +L+ +Y   G++ +AE +F  M  +   ++N +I+GL+  G  +KA+ 
Sbjct: 300 LGFS-SDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAME 358

Query: 423 LFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF----------NAMIQ-------- 464
           LF RM  +GL+PD  T   ++ AC+  G L  G+Q            N  I+        
Sbjct: 359 LFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYA 418

Query: 465 ---------DYKISPKLQH----------YGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
                    +Y +  ++++          YG + DL     +F +    ++  E+ P+  
Sbjct: 419 KCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQ----MQIEEIVPNQY 474

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV--LLSNMYAGAGRWDDVATIRTR 563
            + S+L  C   G LELGE +   +++   +   AYV  +L +MYA  G+ D    I  R
Sbjct: 475 TYPSILKTCIRLGDLELGEQIHSQIIKTSFQ-LNAYVCSVLIDMYAKLGKLDTAWDILIR 533

Query: 564 LNDK 567
              K
Sbjct: 534 FAGK 537



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 104/255 (40%), Gaps = 43/255 (16%)

Query: 38  SKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVI 97
           S+  NM+  KQVH+ I KTG  +     + +I + A    G +S A   F  +   N+V 
Sbjct: 686 SETANMKQGKQVHAVITKTGYDSETEVCNAIISMYA--KCGSISDAKKQFLELSMKNEVS 743

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG-KQIHAHV 156
           WN +I  +S       A+  + +MI S   PN  T   +L +C+ I  + +G +   +  
Sbjct: 744 WNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMN 803

Query: 157 LKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDAR 216
            + GL   P  +  +++M  +                                G L  A+
Sbjct: 804 TEYGLAPKPEHYVCVVDMLTR-------------------------------AGLLSRAK 832

Query: 217 QLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC-SLIEGHGLGSNLHVTNALI 275
               EMPI      P+     T+LSAC    ++E+G +    L+E     S  +V   L 
Sbjct: 833 DFILEMPIE-----PDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVL--LS 885

Query: 276 DMYSKCGDLVKARDL 290
           ++Y+ C     ARDL
Sbjct: 886 NLYAVCRKW-DARDL 899


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 267/680 (39%), Positives = 391/680 (57%), Gaps = 13/680 (1%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           +LL +C  +  ++++H+QI    L    F  + L++  A S  G L  A L F  I   N
Sbjct: 40  SLLWQCRGLDEVRKLHAQIAARKLDRNTFLGNVLVD--AYSKHGSLHGAQLAFGRITLHN 97

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
              WN ++  ++ +  P  A   +  M   G  PN  T    L +C     ++ G++++ 
Sbjct: 98  AHSWNILMAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRKLNE 157

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
            +    LE D  V +SLI MY +  E+E A   F++S  +D V +TA+I+ YA       
Sbjct: 158 LIASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSR 217

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG---SNLHVT 271
           A +L   M +  E       T V++L ACA   +++L N V        +G   S+  V 
Sbjct: 218 ALELVRRMDL--EGIKLGLPTYVSLLDACA--STMDLRNGVAFHQRAAAIGLDRSSTVVA 273

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
             L+++Y KCG +  AR + +++  R  +SW  MI  Y    +  EA+ LF+ M     E
Sbjct: 274 GTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAE 333

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+D+T +SV+ +CA LG L LGK IHA I  +     ++ L  ++I MY KCGN++ A +
Sbjct: 334 PSDITLISVVDSCAVLGTLSLGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLELARE 393

Query: 392 VFDGMGYKT--LASWNAMISGLAMHGKADKALSLFSRM-IGEGLQPDDITFVGVLSACNH 448
           VF+ +  +T  + +W AMI   A +G  ++A+ LF  M I  G +P+ +TF+ VL AC+H
Sbjct: 394 VFECVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMLIDGGTEPNRVTFLSVLCACSH 453

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL-KTMEMKPDAAIW 507
            G L+   ++F +M  D+ + P   HY C+VDLLGRAG   EAE LL +  + + D   W
Sbjct: 454 LGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCW 513

Query: 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
            + L AC+++G LE  +  AK + ELEPEN    VLLSN+YA  GR  DVA IR  +   
Sbjct: 514 IAFLSACQMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMKSS 573

Query: 568 GMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
           G+KK  G S IE+ + VHEF+V D  HP+   IY  L+ +   ++++G+VPDT  VL D+
Sbjct: 574 GVKKFAGRSWIEINNRVHEFMVSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMVLRDV 633

Query: 628 DEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIA 687
           DEE K   L +HSE+LA+A G+IST PGTT+R+VKNLRVC +CH+ATK IS+I  R+II 
Sbjct: 634 DEEKKVQLLGYHSERLAMALGIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQIIV 693

Query: 688 RDRNRFHHFKDGNCSCNDYW 707
           RD +RFHHFKDG CSC DYW
Sbjct: 694 RDTSRFHHFKDGVCSCGDYW 713


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 248/595 (41%), Positives = 367/595 (61%), Gaps = 4/595 (0%)

Query: 114 AIKFYVRMIL-SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLI 172
           +I+ +  M+L +G   +  T   +L + A++  +  G QI    +K G  S   + T LI
Sbjct: 14  SIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKCGFYSHVSLLTGLI 73

Query: 173 NMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPN 232
           +++++ GE+E ARL+F +   +D +S  A+I+G+   G  +D+ +LF E+    E    +
Sbjct: 74  SLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGERV--S 131

Query: 233 ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFE 292
            ST+V ++   +  G   L N +       G+ S+  V+ AL  +Y +  +++ AR LF+
Sbjct: 132 SSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFD 191

Query: 293 SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL 352
              ++ + SWN MI G T       A+ LF+ M ++N+ PN VT  S+L ACA +GAL L
Sbjct: 192 ESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSL 251

Query: 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLA 412
           G+W+H+ I  N  + +NV + T+LIDMYAKCG+I  A ++FD M  K   +WNAMISG  
Sbjct: 252 GEWVHSLIKSNRFE-SNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYG 310

Query: 413 MHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL 472
           +HG   +AL LF  M+   ++P  +TF+ VL AC+HAGL+  G   F+ M+ D+   P  
Sbjct: 311 LHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLA 370

Query: 473 QHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
           +HY CMVD+LGRAG   +A   +K M ++P   +W +LLGAC +H    L    ++ L E
Sbjct: 371 EHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTNLAHVASEKLFE 430

Query: 533 LEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDK 592
           L+PEN G YVL+SN+Y+   ++   A++R     K + K PGC+ IE+G V H F  GD+
Sbjct: 431 LDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQ 490

Query: 593 VHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLIST 652
            HPQSK IY  LD++   + ++GF  +T+ VL+D++EE KE  +  HSEKLAIA+GLIST
Sbjct: 491 SHPQSKAIYAELDKLTGKMTEAGFQTETTTVLHDLEEEEKELTMKVHSEKLAIAFGLIST 550

Query: 653 KPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +PG  IRI+KNLRVC +CH+ TK +SKI  R I+ RD NRFHHFKDG CSC DYW
Sbjct: 551 EPGAEIRIIKNLRVCLDCHNWTKFLSKITKRVIVVRDANRFHHFKDGLCSCGDYW 605



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 177/350 (50%), Gaps = 9/350 (2%)

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
           +I+G+      +D+ ++F +M +       + +TV+ VL A A +  L+LG  +  L   
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRF-DLTTVIAVLPAVAELQELKLGMQILCLAIK 59

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALML 321
            G  S++ +   LI ++SKCG++  AR LF  I K+D+IS N MI G+T   + ++++ L
Sbjct: 60  CGFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRL 119

Query: 322 FRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381
           F+++L S    +  T + ++P  +  G   L   IH +  K    +++ S+ T+L  +Y 
Sbjct: 120 FKELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVK-LGIVSHSSVSTALTTVYC 178

Query: 382 KCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVG 441
           +   +  A Q+FD    KTLASWNAMISG   +G  D A+SLF  M    + P+ +T   
Sbjct: 179 RLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTS 238

Query: 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK 501
           +LSAC   G L +G ++ +++I+  +    +     ++D+  + G    A  L   M  K
Sbjct: 239 ILSACAQIGALSLG-EWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEK 297

Query: 502 PDAAIWTSLLGACRVHGRLELGESVAKHLLEL--EPENPGAYVLLSNMYA 549
            +   W +++    +HG    G+   K   ++      P     LS +YA
Sbjct: 298 NEVT-WNAMISGYGLHGH---GQEALKLFYDMLSSSVKPTGLTFLSVLYA 343



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 114/217 (52%), Gaps = 3/217 (1%)

Query: 79  DLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILK 138
           ++ +A  +F+   E     WN +I G + +     AI  +  M  +   PN  T   IL 
Sbjct: 182 EMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILS 241

Query: 139 SCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVS 198
           +CA+I A+S G+ +H+ +     ES+ +V T+LI+MYA+ G +  AR +F+    ++ V+
Sbjct: 242 ACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVT 301

Query: 199 YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC-S 257
           + A+I+GY   G+  +A +LF +M     +  P   T ++VL AC+H G ++ G+ +  +
Sbjct: 302 WNAMISGYGLHGHGQEALKLFYDM--LSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHT 359

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
           ++   G          ++D+  + G L KA +  +++
Sbjct: 360 MVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAM 396


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 253/598 (42%), Positives = 370/598 (61%), Gaps = 51/598 (8%)

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           QIHA +L+ GL   P ++  L   YA  G L  +  +F+++   +   +T +I  +A   
Sbjct: 41  QIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFD 100

Query: 211 YLDDARQLFDEM---PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
               A   + +M   PI+     PN  T+ ++L AC    +L     V S     GL S+
Sbjct: 101 LFHHALSYYSQMLTHPIQ-----PNAFTLSSLLKAC----TLHPARAVHSHAIKFGLSSH 151

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKR------------------------------ 297
           L+V+  L+D Y++ GD+  A+ LF+++ +R                              
Sbjct: 152 LYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGM 211

Query: 298 -DVISWNVMIGGYTHTSDYKEALMLFRQMLQS-------NIEPNDVTFLSVLPACAYLGA 349
            DV+ WNVMI GY       EAL+ FR+M+          + PN++T ++VL +C  +GA
Sbjct: 212 KDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGA 271

Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
           L+ GKW+H+Y++ N  K+N V + T+L+DMY KCG+++ A +VFD M  K + +WN+MI 
Sbjct: 272 LECGKWVHSYVENNGIKVN-VRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIM 330

Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS 469
           G  +HG +D+AL LF  M   G++P DITFV VL+AC HAGL+  G + F++M   Y + 
Sbjct: 331 GYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGME 390

Query: 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKH 529
           PK++HYGCMV+LLGRAG   EA  L+++ME++PD  +W +LL ACR+H  + LGE +A+ 
Sbjct: 391 PKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEI 450

Query: 530 LLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLV 589
           L+     + G YVLLSNMYA A  W  VA +R+ +   G++K PGCSSIEV + VHEF+ 
Sbjct: 451 LVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVA 510

Query: 590 GDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGL 649
           GD+ HP+SK IY ML++++  L++  + P T  VL+D+ E+ KE +L  HSEKLA+A+GL
Sbjct: 511 GDRRHPRSKDIYSMLEKMNGWLKERHYTPKTDAVLHDIGEQEKEQSLEVHSEKLALAFGL 570

Query: 650 ISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           IST PG  I+IVKNLRVC +CH+  K++SKI  R+II RDRNRFHHF++G+CSC DYW
Sbjct: 571 ISTSPGAAIKIVKNLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFENGSCSCRDYW 628



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 128/406 (31%), Positives = 212/406 (52%), Gaps = 47/406 (11%)

Query: 30  NQPSLALL---SKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLV 86
           ++ +LALL   SK T+  ++ Q+H+ +++ GLH+      KL    + +  G L +++ +
Sbjct: 22  DKDNLALLIDNSKSTH--HLLQIHAALLRRGLHHHPILNFKLQR--SYASLGHLHHSVTL 77

Query: 87  FETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAI 146
           F     PN  +W +II  H+       A+ +Y +M+     PN +T   +LK+C     +
Sbjct: 78  FHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACT----L 133

Query: 147 SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGY 206
              + +H+H +K GL S  +V T L++ YA+ G++ SA+ +F+    R  VSYTA++T Y
Sbjct: 134 HPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCY 193

Query: 207 ASRGYLDDARQLFDEMPIRE------------------ENFV------------------ 230
           A  G L +AR LF+ M +++                  E  V                  
Sbjct: 194 AKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVR 253

Query: 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDL 290
           PNE TVV VLS+C  +G+LE G WV S +E +G+  N+ V  AL+DMY KCG L  AR +
Sbjct: 254 PNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKV 313

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350
           F+ +E +DV++WN MI GY       EAL LF +M    ++P+D+TF++VL ACA+ G +
Sbjct: 314 FDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLV 373

Query: 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
             G  +   +   +     V  +  ++++  + G ++ A  +   M
Sbjct: 374 SKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSM 419



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 152/315 (48%), Gaps = 40/315 (12%)

Query: 30  NQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIE------------------- 70
           N  +L+ L K   +   + VHS  IK GL +  +  + L++                   
Sbjct: 120 NAFTLSSLLKACTLHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMP 179

Query: 71  ----------ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVR 120
                     +   +  G L  A ++FE +   + V WN +I G++    P  A+ F+ +
Sbjct: 180 ERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRK 239

Query: 121 MILSGFV-------PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLIN 173
           M++           PN  T   +L SC ++ A+  GK +H++V   G++ +  V T+L++
Sbjct: 240 MMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVD 299

Query: 174 MYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
           MY + G LE AR VF+    +D V++ ++I GY   G+ D+A QLF EM        P++
Sbjct: 300 MYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCI--GVKPSD 357

Query: 234 STVVTVLSACAHMGSLELGNWVC-SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFE 292
            T V VL+ACAH G +  G  V  S+ +G+G+   +     ++++  + G + +A DL  
Sbjct: 358 ITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVR 417

Query: 293 SIE-KRDVISWNVMI 306
           S+E + D + W  ++
Sbjct: 418 SMEVEPDPVLWGTLL 432


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 242/587 (41%), Positives = 370/587 (63%), Gaps = 6/587 (1%)

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           M+  G  P+ +TFPFI+K+C+ +     G +IH  V+K G +S  F+  SLI MY +  +
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
            E +R VF++   ++AVS++A+I          +   LF +M    E   P+   +   L
Sbjct: 61  YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQML--SEGSRPSRGAI---L 115

Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVI 300
           +A A + S E  + V  ++  +GL  +  V +A   M+++CG +  AR LF+ I  +D++
Sbjct: 116 NAMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLV 175

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           +W   I  Y       EAL L +QM+   I P+ +T L V+ AC+ L +  L   +H  I
Sbjct: 176 TWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGII 235

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
                    +++ T+LID+Y KCG++  A +VFDGM  + + +W+AMISG  MHG   +A
Sbjct: 236 TTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREA 295

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
           L+LF +M    ++PD ITFV +LSAC+H+GL+  G + FN+M +D+ ++P+ +HY CMVD
Sbjct: 296 LNLFDQM-KASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVD 354

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540
           +LGRAG  DEA   ++ M ++P+AA+W +LLGACR+H  ++L E VA+ L +L+P N G 
Sbjct: 355 ILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGR 414

Query: 541 YVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHI 600
           YV+L N+Y   G+  +  +IRT + ++G+KK+ G S IE+ + ++ F+ GD+ HPQ+  I
Sbjct: 415 YVILYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLI 474

Query: 601 YEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRI 660
           Y  L+ +   + + G+ PD + VL+D+DEE KE  L  HSEKLAI +GL++  PG+ IRI
Sbjct: 475 YSELERLMDRIRQEGYTPDINFVLHDVDEETKESMLYLHSEKLAIVFGLLNLGPGSVIRI 534

Query: 661 VKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            KNLRVCG+CH+ATK ISK+  REI+ RD +RFHHFK+G CSC DYW
Sbjct: 535 RKNLRVCGDCHTATKFISKVTGREIVVRDAHRFHHFKNGACSCRDYW 581



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 99/416 (23%), Positives = 179/416 (43%), Gaps = 72/416 (17%)

Query: 49  VHSQIIKTGL---HNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           V+  +++ GL    + Q A + +   C     G +  A  +F+ I   + V W   I  +
Sbjct: 130 VYRVVVENGLDFDQSVQSAAAGMFARC-----GRVEVARKLFDGIMSKDLVTWATTIEAY 184

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
             +  P+ A+    +M+L G  P+  T   ++++C+ +++      +H  ++  G   + 
Sbjct: 185 VKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHG-IITTGFFYNQ 243

Query: 166 F--VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
              V T+LI++Y + G L  AR VF+    R+ ++++A+I+GY   G+  +A  LFD+M 
Sbjct: 244 LLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQM- 302

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVC--SLIEGHGLGSNLHVTNALIDMYSKC 281
             + +  P+  T V++LSAC+H G +  G W C  S+    G+         ++D+  + 
Sbjct: 303 --KASVKPDHITFVSILSACSHSGLVAEG-WECFNSMARDFGVTPRPEHYACMVDILGRA 359

Query: 282 GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
           G L +A D  E +  R                                  PN   + ++L
Sbjct: 360 GKLDEACDFIERMPVR----------------------------------PNAAVWGALL 385

Query: 342 PACAYLGALDLGKWI-HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM---G 397
            AC     +DL + +  A  D +    +N   +  L ++Y   G  K A+ +   M   G
Sbjct: 386 GACRIHLNVDLAEMVARALFDLDP---HNAGRYVILYNIYTLTGKRKEADSIRTLMKNRG 442

Query: 398 YKTLASWN---------AMISGLAMHGKADKALS----LFSRMIGEGLQPDDITFV 440
            K +A ++         A ++G   H + D   S    L  R+  EG  P DI FV
Sbjct: 443 VKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLIYSELERLMDRIRQEGYTP-DINFV 497


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 260/633 (41%), Positives = 372/633 (58%), Gaps = 27/633 (4%)

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNT---YTFPFILKSCAKISAISEGKQIHA 154
           W   IR  +     + AI  +++M  S   P +    + P  LKSCA +   +    +HA
Sbjct: 15  WAYQIRMAASQGQFLHAISLFLQMRAS-VAPRSSVPASLPAALKSCAGLGLCTLAASLHA 73

Query: 155 HVLKLGLESDPFVHTSLINM----------YAQNG----------ELESARLVFNKSSLR 194
             ++ G  +D F   +L+N+          +  NG            ES R VF++   R
Sbjct: 74  LAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLER 133

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
           DAVS+  LI G A      +A  +  EM    + F+P+  T+ TVL   A    ++ G  
Sbjct: 134 DAVSWNTLILGCAEHKRHQEALSMVREM--WRDGFMPDTFTLSTVLPIFAECADIKRGMV 191

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           V      +G  +++ V ++LIDMY+ C  +  +  +F+S    D + WN M+ GY     
Sbjct: 192 VHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGS 251

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
            +EAL +FR+MLQ+ + P  VTF S++PA   L  L LGK +HAY+ +     +N+ + +
Sbjct: 252 VEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFN-DNIFISS 310

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
           SLIDMY KCGN+  A +VF+G+    + SW AMI G A+HG   +A  LF RM    ++P
Sbjct: 311 SLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKP 370

Query: 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494
           + ITF+ VL+AC+HAGL+D G +YFN+M   Y   P L+H   + D LGRAG  DEA   
Sbjct: 371 NHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNF 430

Query: 495 LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554
           +  M++KP +++W++LL ACRVH    L E VAK + ELEP++ G++V+LSNMY+ +GRW
Sbjct: 431 ISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGRW 490

Query: 555 DDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKS 614
           ++ A +R  +  KGMKK P CS IEV + +H F+  DK HP    I + L+     + + 
Sbjct: 491 NEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRIIDALNVYSEQMIRQ 550

Query: 615 GFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSAT 674
           G+VP+  +VL D++EE K   L  HSEKLAI +G+IST PGTTIR++KNLRVC +CH AT
Sbjct: 551 GYVPNMEDVLQDIEEEQKREVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRVCVDCHIAT 610

Query: 675 KLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           K ISKI  REI+ RD NRFH FKDGNCSC D+W
Sbjct: 611 KFISKIVAREIVVRDVNRFHRFKDGNCSCGDFW 643



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 116/415 (27%), Positives = 202/415 (48%), Gaps = 24/415 (5%)

Query: 19  PSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAV---- 74
           P S  P  L     S A L  CT   ++   H+  I++G    +F  + L+ +C      
Sbjct: 44  PRSSVPASLPAALKSCAGLGLCTLAASL---HALAIRSGSFADRFTANALLNLCIKLPGF 100

Query: 75  -SPFG-----------DLSYALL--VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVR 120
             PFG             +Y  +  VF+ + E + V WN +I G +       A+     
Sbjct: 101 HHPFGTNGPSGEGGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVRE 160

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           M   GF+P+T+T   +L   A+ + I  G  +H + +K G ++D FV +SLI+MYA   +
Sbjct: 161 MWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQ 220

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
           ++ +  VF+  S  DAV + +++ GYA  G +++A  +F  M   +    P   T  +++
Sbjct: 221 MDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRM--LQAGVRPVPVTFSSLI 278

Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVI 300
            A  ++  L LG  + + +       N+ ++++LIDMY KCG++  AR +F  I+  D++
Sbjct: 279 PAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIV 338

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           SW  MI GY       EA +LF +M   N++PN +TFL+VL AC++ G +D G      +
Sbjct: 339 SWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSM 398

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMH 414
              +  + ++    +L D   + G++  A      M  K  +S W+ ++    +H
Sbjct: 399 SNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVH 453


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 246/589 (41%), Positives = 362/589 (61%), Gaps = 9/589 (1%)

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           M+ SG  PN +TFPF +KSCA +S    GKQ+H HV K G   +PFV TSLI+MY +   
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 181 LESARLVF--NKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVT 238
           +++AR +F  N  S +  V Y +L++GYA    + D   LF EM  RE     N  T++ 
Sbjct: 61  IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEM--RELGVEINGVTMLG 118

Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD 298
           ++  C   G+L LG  V       GL  +  V N L+ MY K G++   R LF+ + ++ 
Sbjct: 119 LVQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKG 178

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
           +I+WN MI GY         L L+++M      P+ +T + VL +CA+LGAL +GK +  
Sbjct: 179 LITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVER 238

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKAD 418
            ++      +N  L  +L++MYA+CGN+K A  +FDGM  K++ SW A+I G  MHG+ +
Sbjct: 239 KME-GFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGE 297

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478
            A+ LF  MI  G++PD   FV VLSAC+HAGL + G  YF  M + Y + P  +HY CM
Sbjct: 298 VAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCM 357

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
           VDLLGRAG  +EA  L+++M+++ D A+W +LLGAC++H  +EL E   + ++ELEP N 
Sbjct: 358 VDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTNT 417

Query: 539 GAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSK 598
           G YVLLSN+Y  AG  + +  +R  +  + +KK PGCS +E    VH F  GD+ HPQ+ 
Sbjct: 418 GYYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLFFAGDRNHPQTN 477

Query: 599 HIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTI 658
            IY+ L+E++ L++    +    +  ++  EE+   ++  HSEKLA+A+ L++T+  T I
Sbjct: 478 EIYKKLNELENLVKD---LDGCKKNDHERREEYLN-SMGVHSEKLAVAFALLNTRKETEI 533

Query: 659 RIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            I+KNLR+CG+CH   KL+SKI +R+ + RD  RFHHFK+G CSC +YW
Sbjct: 534 IIIKNLRICGDCHLFIKLVSKIVDRQFVVRDATRFHHFKNGFCSCKEYW 582



 Score =  198 bits (504), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 116/414 (28%), Positives = 212/414 (51%), Gaps = 10/414 (2%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           KQ+H  + KTG     F  + LI +       D +  L           V +N+++ G++
Sbjct: 30  KQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARKLFDENPQSRKLTVCYNSLLSGYA 89

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
           L+S     +  +  M   G   N  T   +++ C     +  G  +H   +K GL+ D  
Sbjct: 90  LNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMDSS 149

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V   L+ MY ++GE++  R +F++   +  +++ A+I GYA  G  ++  +L+ EM    
Sbjct: 150 VGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEM--ES 207

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           + F P+  T+V VLS+CAH+G+L +G  V   +EG G  SN  + NAL++MY++CG+L K
Sbjct: 208 KGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKK 267

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           ARD+F+ +  + V+SW  +IGGY      + A+ LF +M++  I+P+   F+SVL AC++
Sbjct: 268 ARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSH 327

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT-LASWN 405
            G  + G      +++ +        ++ ++D+  + G +  A ++ + M  +   A W 
Sbjct: 328 AGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWG 387

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS-----ACNHAGLLDI 454
           A++    +H   + A   F ++I   L+P +  +  +LS     A N  G+L +
Sbjct: 388 ALLGACKIHRNVELAELAFEQVI--ELEPTNTGYYVLLSNVYTEAGNLEGILRV 439


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 250/621 (40%), Positives = 378/621 (60%), Gaps = 47/621 (7%)

Query: 24  PYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF-GDLSY 82
           P   L  Q  ++ L  C +M ++KQ+H+QI + GLH    +L+KL+  C   PF G+L+Y
Sbjct: 31  PTTGLSQQSCISYLKSCKSMTHLKQIHAQIFRVGLHQDIVSLNKLMAFCT-DPFNGNLNY 89

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           A  +F+ IR P  +I+N II+  +   +    +  + ++   G  P+ +T+PF+ K+   
Sbjct: 90  AEKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGY 149

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
           +  +S+ +++   V K GLE D +V  SLI+MYAQ    +  +++F++   RD +S+  +
Sbjct: 150 LGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVM 209

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
           I+GY      +DA  +F  M   E   +P+E+TVV+ LSAC  +  LELG  +      H
Sbjct: 210 ISGYVKCRRFEDAINVFCRMQ-EESGLMPDEATVVSTLSACTALKRLELGKKI-----HH 263

Query: 263 GLGSNLHVT----NALIDMYSKCG-------------------------------DLVKA 287
            +  N+  T    NAL+DMY KCG                               +L +A
Sbjct: 264 YVRDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEA 323

Query: 288 RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347
           R+LFE    RDV+ W  MI GY   + + EA+ LFR+M    ++P+    +S+L  CA  
Sbjct: 324 RELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQT 383

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
           GA++ GKWIH +ID+N   ++ V + T+LI+MYAKCG I+ A ++F G+  K  ASW ++
Sbjct: 384 GAIEQGKWIHEFIDENRIPIDAV-VGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSI 442

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           I GLAM+GK  KAL LFS+M   G++PDDITF+GVLSAC+H GL++ GR++FN+M  +Y+
Sbjct: 443 ICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQ 502

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA---AIWTSLLGACRVHGRLELGE 524
           I PK++HYGC+VDLLGRAGL +EAE L+K +  +  A    ++ SLL ACR++G +E+GE
Sbjct: 503 IKPKVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGE 562

Query: 525 SVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVV 584
            VAK L++ E  +   + LL+N+YA A RW+DV  +R ++ D G+KK PGCSSIEV S++
Sbjct: 563 RVAKQLVKFESSDSSVHTLLANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSIEVDSII 622

Query: 585 HEFLVGDKVHPQSKHIYEMLD 605
           HEF  G   HP+ + IY ML+
Sbjct: 623 HEFFSGHPSHPEMREIYYMLN 643



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 194/411 (47%), Gaps = 30/411 (7%)

Query: 232 NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK--CGDLVKARD 289
           ++ + ++ L +C  M  L+    + + I   GL  ++   N L+   +    G+L  A  
Sbjct: 36  SQQSCISYLKSCKSMTHLK---QIHAQIFRVGLHQDIVSLNKLMAFCTDPFNGNLNYAEK 92

Query: 290 LFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA 349
           +F+ I    ++ +N++I  +    +YK  L+LF ++ +  + P++ T+  V  A  YLG 
Sbjct: 93  MFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGE 152

Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
           +   + +   + K   + +   +  SLIDMYA+       + +FD M  + + SWN MIS
Sbjct: 153 VSKAEKLRGLVTKTGLEFDTY-VRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMIS 211

Query: 410 GLAMHGKADKALSLFSRMIGE-GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
           G     + + A+++F RM  E GL PD+ T V  LSAC     L++G++  + +  + K 
Sbjct: 212 GYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYVRDNVKF 271

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
           +P + +   ++D+  + G    A A+ + M  K +   WT+++      G LE     A+
Sbjct: 272 TPIIGN--ALLDMYCKCGCLSIARAVFEEMPSK-NVICWTTMVSGYANCGELE----EAR 324

Query: 529 HLLELEP-ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK--------VPGCS--- 576
            L E  P  +   +  + N Y    R+D+   +   +  + +K         + GC+   
Sbjct: 325 ELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTG 384

Query: 577 SIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
           +IE G  +HEF+  +++ P    +   L E+ A   K GF+    E+ Y +
Sbjct: 385 AIEQGKWIHEFIDENRI-PIDAVVGTALIEMYA---KCGFIEKALEIFYGL 431


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 235/529 (44%), Positives = 342/529 (64%), Gaps = 7/529 (1%)

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
           ++S R +F     +D VS+  +I G A  G   +   +  EM     N  P+  T+ +VL
Sbjct: 250 VDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMG--GANLKPDSFTLSSVL 307

Query: 241 SACAHMGSLELGNWV--CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD 298
              A    +  G  +  CS+ +G  L + ++V ++LIDMY+KC  +V +  +F  + +RD
Sbjct: 308 PLIAENVDISKGKEIHGCSIRQG--LDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERD 365

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
            ISWN +I G      + E L  FRQML + I+P   +F S++PACA+L  L LGK +H 
Sbjct: 366 GISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHG 425

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKAD 418
           YI +N     N+ + +SL+DMYAKCGNI+ A Q+FD M  + + SW AMI G A+HG A 
Sbjct: 426 YITRNGFD-ENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHAL 484

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478
            A+ LF +M  EG++P+ + F+ VL+AC+HAGL+D   +YFN+M  D+ I+P ++HY  +
Sbjct: 485 DAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAV 544

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
            DLLGRAG  +EA   +  M + P  ++W +LL ACRVH  +++ E VA  +LE++P+N 
Sbjct: 545 SDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNT 604

Query: 539 GAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSK 598
           GAY+LL+N+Y+ A RW + A  R  L   G++K P CS IEV + V+ F+ GD+ HP  +
Sbjct: 605 GAYILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYE 664

Query: 599 HIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTI 658
            I E ++ +  L+EK G+VPDTSEV +D++EE K+  +  HSE+LAI +G+I+T  GTTI
Sbjct: 665 KIREAMEVLMELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGTTI 724

Query: 659 RIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           R+ KNLRVC +CH+ATK ISKI  REI+ RD +RFHHFK+G CSC DYW
Sbjct: 725 RVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 178/344 (51%), Gaps = 3/344 (0%)

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145
           +FE + E + V WN II G++ +      +     M  +   P+++T   +L   A+   
Sbjct: 256 IFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVD 315

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
           IS+GK+IH   ++ GL+++ +V +SLI+MYA+   +  +  VF   + RD +S+ ++I G
Sbjct: 316 ISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAG 375

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
               G  D+  + F +M + +    P   +  +++ ACAH+ +L LG  +   I  +G  
Sbjct: 376 CVQNGLFDEGLKFFRQMLMAK--IKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFD 433

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
            N+ + ++L+DMY+KCG++  AR +F+ +  RD++SW  MI G        +A+ LF QM
Sbjct: 434 ENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQM 493

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
               IEPN V F++VL AC++ G +D        +  +      V  + ++ D+  + G 
Sbjct: 494 KTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGR 553

Query: 386 IKAAEQVFDGMGYKTLAS-WNAMISGLAMHGKADKALSLFSRMI 428
           ++ A     GM      S W  ++S   +H   D A  + +R++
Sbjct: 554 LEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRIL 597



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 115/449 (25%), Positives = 213/449 (47%), Gaps = 41/449 (9%)

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           +L +F T+  P  + W ++IR ++    P  ++  ++ M+ SG  P+   FP +LK+CA 
Sbjct: 61  SLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAM 120

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
           +  ++ G+ +H +++++GL+ D +   +L+NMY        ++L F K S R  +     
Sbjct: 121 LMDLNLGESLHGYIIRVGLDFDLYTGNALMNMY--------SKLRFLKKSGRQRLG---- 168

Query: 203 ITGYASRGYLDDARQLFDEMPIREEN------FVPNESTVVTVLSACAHMGSLELGNWVC 256
                       A Q+ DEM  R  +       V N+   V+ + A  +  S     +  
Sbjct: 169 ------------ASQVLDEMTERTRSVRTASVLVGNQGRKVSDIEAFNYDVSCRSREFEA 216

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKA------RDLFESIEKRDVISWNVMIGGYT 310
            ++E      + +      ++  +  D+  +      R +FE + ++D++SWN +I G  
Sbjct: 217 QVLEIDYKPRSEYREMEACNLGQQIKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNA 276

Query: 311 HTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN-N 369
               Y E L + R+M  +N++P+  T  SVLP  A    +  GK IH    +  Q L+  
Sbjct: 277 RNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIR--QGLDAE 334

Query: 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG 429
           V + +SLIDMYAKC  +  + +VF  +  +   SWN++I+G   +G  D+ L  F +M+ 
Sbjct: 335 VYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLM 394

Query: 430 EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489
             ++P   +F  ++ AC H   L +G+Q  +  I        +     +VD+  + G   
Sbjct: 395 AKIKPKSYSFSSIMPACAHLTTLHLGKQ-LHGYITRNGFDENIFIASSLVDMYAKCGNIR 453

Query: 490 EAEALLKTMEMKPDAAIWTSLLGACRVHG 518
            A  +   M ++ D   WT+++  C +HG
Sbjct: 454 TARQIFDRMRLR-DMVSWTAMIMGCALHG 481



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 143/258 (55%), Gaps = 5/258 (1%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L L+++  ++   K++H   I+ GL    +  S LI++ A       SY   VF  + E 
Sbjct: 307 LPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYR--VFTLLTER 364

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           + + WN+II G   +      +KF+ +M+++   P +Y+F  I+ +CA ++ +  GKQ+H
Sbjct: 365 DGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLH 424

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
            ++ + G + + F+ +SL++MYA+ G + +AR +F++  LRD VS+TA+I G A  G+  
Sbjct: 425 GYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHAL 484

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL-ELGNWVCSLIEGHGLGSNLHVTN 272
           DA +LF++M  + E   PN    + VL+AC+H G + E   +  S+    G+   +    
Sbjct: 485 DAIELFEQM--KTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYA 542

Query: 273 ALIDMYSKCGDLVKARDL 290
           A+ D+  + G L +A D 
Sbjct: 543 AVSDLLGRAGRLEEAYDF 560



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 117/495 (23%), Positives = 202/495 (40%), Gaps = 73/495 (14%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           +L++   I + S+ +Q+HA VLK    S     + L+++Y+    L  +  +FN      
Sbjct: 14  LLRNPLSIKSRSQAQQLHAQVLKFQ-ASSLCNLSLLLSIYSHINLLHDSLRLFNTLHFPP 72

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
           A+++ ++I  Y S G    +   F  + +      P+ +   +VL ACA +  L LG  +
Sbjct: 73  ALAWKSVIRCYTSHGLPHKSLGSF--IGMLASGLYPDHNVFPSVLKACAMLMDLNLGESL 130

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVK--------ARDLFESIEK-RDVISWNVMI 306
              I   GL  +L+  NAL++MYSK   L K        ++ L E  E+ R V + +V++
Sbjct: 131 HGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTASVLV 190

Query: 307 GGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY--LGALDLGKWIHAYIDKNH 364
           G         EA            E   V  +   P   Y  + A +LG           
Sbjct: 191 GNQGRKVSDIEAFNYDVSCRSREFEAQ-VLEIDYKPRSEYREMEACNLG----------- 238

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF 424
           Q++ ++S   S          + +  ++F+ M  K L SWN +I+G A +G   + L++ 
Sbjct: 239 QQIKDISHSMS----------VDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMV 288

Query: 425 SRMIGEGLQPDDITFVGVLS---------------ACNHAGLLDIGRQYFNAMIQDY-KI 468
             M G  L+PD  T   VL                 C+    LD      +++I  Y K 
Sbjct: 289 REMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKC 348

Query: 469 SPKLQHYGCMVDLLGR--------------AGLFDEAEALLKTMEM---KPDAAIWTSLL 511
           +  +  Y     L  R               GLFDE     + M M   KP +  ++S++
Sbjct: 349 TRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIM 408

Query: 512 GACRVHGRLELGESVAKHLLELE-PENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
            AC     L LG+ +  ++      EN      L +MYA  G   ++ T R   +   ++
Sbjct: 409 PACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCG---NIRTARQIFDRMRLR 465

Query: 571 KVPGCSSIEVGSVVH 585
            +   +++ +G  +H
Sbjct: 466 DMVSWTAMIMGCALH 480


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 249/575 (43%), Positives = 365/575 (63%), Gaps = 9/575 (1%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN--GELESARLVFNKSSL 193
           +LK C    ++ E KQ+HAH+LKLGL  D F  ++L+   A +  G +E A  +F +   
Sbjct: 36  LLKRC---KSMEEFKQVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEE 92

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
             +  Y  +I G  +   L++A  L+ EM   E    P+  T   VL AC+ +G+L+ G 
Sbjct: 93  PGSFEYNTMIRGNVNSMNLEEALLLYVEML--ERGIEPDNFTYPFVLKACSLLGALKEGV 150

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTS 313
            + + +   GL  ++ V N LI+MY KCG +  A  +FE ++++ V SW+ +IG +    
Sbjct: 151 QIHAHVFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVE 210

Query: 314 DYKEALMLFRQML-QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
            + E LML   M  +      +   +S L AC +LG+ + G+ IH  + +N  +LN V++
Sbjct: 211 MWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISELN-VAV 269

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
            TSLIDMY K G+++    VF  M  K   S+  +I+GLA+HG+  +ALS+FS M+ EGL
Sbjct: 270 KTSLIDMYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFSDMLEEGL 329

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
            PDD+ +VGVLSAC+HAGL++ G Q FN +  ++KI P +QHYGCMVDL+GRAG+   A 
Sbjct: 330 APDDVVYVGVLSACSHAGLVNEGLQCFNRLQFEHKIKPTIQHYGCMVDLMGRAGMLKGAY 389

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552
            L+K+M +KP+  +W SLL AC+VH  LE+GE  A+++ +L   NPG Y++L+NMYA A 
Sbjct: 390 DLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFKLNQHNPGDYLVLANMYARAK 449

Query: 553 RWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE 612
           +W DVA IRT + +K + + PG S +E    V++F+  DK  PQ + IY+M+ +++  L+
Sbjct: 450 KWADVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLK 509

Query: 613 KSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHS 672
             G+ PD S+VL D+DE+ K   L HHS+KLAIA+ LI T  G+ IRI +N+R+C +CH+
Sbjct: 510 FEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSRIRISRNIRMCNDCHT 569

Query: 673 ATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            TK IS I+ REI  RDRNRFHHFKDG CSC DYW
Sbjct: 570 YTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 604



 Score =  235 bits (599), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 133/398 (33%), Positives = 214/398 (53%), Gaps = 4/398 (1%)

Query: 18  PPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF 77
           P SS+   K   N   L+LL +C +M+  KQVH+ I+K GL    F  S L+  CA+S +
Sbjct: 20  PQSSELNAKF--NVQGLSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVATCALSRW 77

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G + YA  +F  I EP    +N +IRG+  S +   A+  YV M+  G  P+ +T+PF+L
Sbjct: 78  GSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVL 137

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
           K+C+ + A+ EG QIHAHV K GLE D FV   LINMY + G +E A +VF +   +   
Sbjct: 138 KACSLLGALKEGVQIHAHVFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVA 197

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           S++++I  +AS     +   L  +M   E      ES +V+ LSAC H+GS   G  +  
Sbjct: 198 SWSSIIGAHASVEMWHECLMLLGDMS-GEGRHRAEESILVSALSACTHLGSPNFGRCIHG 256

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
           ++  +    N+ V  +LIDMY K G L K   +F+++ +++  S+ V+I G       +E
Sbjct: 257 ILLRNISELNVAVKTSLIDMYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGRE 316

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           AL +F  ML+  + P+DV ++ VL AC++ G ++ G      +   H+    +  +  ++
Sbjct: 317 ALSVFSDMLEEGLAPDDVVYVGVLSACSHAGLVNEGLQCFNRLQFEHKIKPTIQHYGCMV 376

Query: 378 DMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMH 414
           D+  + G +K A  +   M  K     W +++S   +H
Sbjct: 377 DLMGRAGMLKGAYDLIKSMPIKPNDVVWRSLLSACKVH 414


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 252/578 (43%), Positives = 366/578 (63%), Gaps = 10/578 (1%)

Query: 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN---GELESARLVFNK 190
           P +L S  K +++ E  QI A+ +K  +E   FV   LIN   ++     +  AR +F  
Sbjct: 32  PILLIS--KCNSLRELMQIQAYAIKSHIEDVSFV-AKLINFCTESPTESSMSYARHLFEA 88

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250
            S  D V + ++  GY+      +   LF E  I E+  +P+  T  ++L ACA   +LE
Sbjct: 89  MSEPDIVIFNSMARGYSRFTNPLEVFSLFVE--ILEDGILPDNYTFPSLLKACAVAKALE 146

Query: 251 LGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYT 310
            G  +  L    GL  N++V   LI+MY++C D+  AR +F+ I +  V+ +N MI GY 
Sbjct: 147 EGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYA 206

Query: 311 HTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNV 370
             +   EAL LFR+M    ++PN++T LSVL +CA LG+LDLGKWIH Y  K H     V
Sbjct: 207 RRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYA-KKHSFCKYV 265

Query: 371 SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE 430
            + T+LIDM+AKCG++  A  +F+ M YK   +W+AMI   A HGKA+K++ +F RM  E
Sbjct: 266 KVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSE 325

Query: 431 GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
            +QPD+ITF+G+L+AC+H G ++ GR+YF+ M+  + I P ++HYG MVDLL  AG  ++
Sbjct: 326 NVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLED 385

Query: 491 AEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAG 550
           A   +  + + P   +W  LL AC  H  L+L E V++ + EL+  + G YV+LSN+YA 
Sbjct: 386 AYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYAR 445

Query: 551 AGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDAL 610
             +W+ V ++R  + D+   KVPGCSSIEV +VVHEF  GD V   +  ++  LDE+   
Sbjct: 446 NKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKE 505

Query: 611 LEKSGFVPDTSEVLY-DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGN 669
           L+ SG+VPDTS V++ +M+++ KE  L +HSEKLAI +GL++T PGTTIR+VKNLRVC +
Sbjct: 506 LKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRD 565

Query: 670 CHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           CH+A KLIS IF R+++ RD  RFHHF+DG CSC D+W
Sbjct: 566 CHNAAKLISLIFGRKVVXRDVQRFHHFEDGKCSCGDFW 603



 Score =  258 bits (659), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 132/403 (32%), Positives = 238/403 (59%), Gaps = 5/403 (1%)

Query: 28  LQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF-GDLSYALLV 86
           +  Q  + L+SKC +++ + Q+ +  IK+ + +  F ++KLI  C  SP    +SYA  +
Sbjct: 27  VNTQNPILLISKCNSLRELMQIQAYAIKSHIEDVSF-VAKLINFCTESPTESSMSYARHL 85

Query: 87  FETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAI 146
           FE + EP+ VI+N++ RG+S  ++P+     +V ++  G +P+ YTFP +LK+CA   A+
Sbjct: 86  FEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKAL 145

Query: 147 SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGY 206
            EG+Q+H   +KLGL+ + +V  +LINMY +  +++SAR VF++      V Y A+ITGY
Sbjct: 146 EEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGY 205

Query: 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS 266
           A R   ++A  LF EM  + +   PNE T+++VLS+CA +GSL+LG W+    + H    
Sbjct: 206 ARRNRPNEALSLFREM--QGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCK 263

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML 326
            + V  ALIDM++KCG L  A  +FE +  +D  +W+ MI  Y +    ++++++F +M 
Sbjct: 264 YVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMR 323

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
             N++P+++TFL +L AC++ G ++ G+   + +      + ++  + S++D+ +  GN+
Sbjct: 324 SENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNL 383

Query: 387 KAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMI 428
           + A +  D +    T   W  +++  + H   D A  +  R+ 
Sbjct: 384 EDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIF 426


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 247/579 (42%), Positives = 365/579 (63%), Gaps = 6/579 (1%)

Query: 129 NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF 188
           +T  F   L SC  +  +   +Q+HA +   G   +  V   L+ MY + G LE A+ +F
Sbjct: 52  DTKRFRSSLLSCRNLFQV---RQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELF 108

Query: 189 NKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS 248
           +  S R   S++ ++ GYA  G       +F E+ +R    + + S  V V+ AC  +  
Sbjct: 109 DGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFREL-LRSGAPLDDYSAPV-VIRACRDLKD 166

Query: 249 LELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGG 308
           L+ G  +  +    GL     V   L+DMY++C  +  A  +F  + KRD+ +W VMIG 
Sbjct: 167 LKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGA 226

Query: 309 YTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN 368
              +    E+L+ F +M    I P+ V  ++V+ ACA LGA++  K IHAYI+     L+
Sbjct: 227 LAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLD 286

Query: 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMI 428
            V L T++IDMYAKCG++++A  +FD M  + + +W+AMI+    HG+ +KAL LF  M+
Sbjct: 287 -VILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMML 345

Query: 429 GEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488
             G+ P+ ITFV +L AC+HAGL++ G+++F++M  +Y ++P ++HY CMVDLLGRAG  
Sbjct: 346 RSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRL 405

Query: 489 DEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548
           DEA  +++ M ++ D  +W +LLGACR+H  L+L E VA+ LL+L+ + PG YVLLSN+Y
Sbjct: 406 DEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIY 465

Query: 549 AGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEID 608
           A AG+W+D+A  R  +   G++K+PG + IEVG  +++F VGDK HP+S  IY+ML  + 
Sbjct: 466 ANAGKWEDMAKTRDLMTKGGLRKIPGRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLG 525

Query: 609 ALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCG 668
             LE +G+ PDT++VLYD+DEE K+G L  HSEKLAIA+GL+    G  IRI KNLRVCG
Sbjct: 526 EKLEVAGYHPDTNDVLYDVDEEVKQGLLYSHSEKLAIAFGLLVLPQGHPIRITKNLRVCG 585

Query: 669 NCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +CH+  K +S I  + II RD  RFHHFK+G CSC DYW
Sbjct: 586 DCHTFCKFVSLIEQKTIIVRDAKRFHHFKEGVCSCRDYW 624



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 203/385 (52%), Gaps = 5/385 (1%)

Query: 37  LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQV 96
           L  C N+  ++QVH+QI   G        +KL+ +      G L  A  +F+ + + +  
Sbjct: 60  LLSCRNLFQVRQVHAQIATNGAFRNLAVANKLLYM--YVERGALEDAQELFDGMSKRHPY 117

Query: 97  IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHV 156
            W+ I+ G++   +       +  ++ SG   + Y+ P ++++C  +  +  G+ IH   
Sbjct: 118 SWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCIT 177

Query: 157 LKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDAR 216
           LK GL+   FV  +L++MYA+   +E A  +F K   RD  ++T +I   A  G   ++ 
Sbjct: 178 LKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESL 237

Query: 217 QLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALID 276
             FD M  R +  VP++  +VTV+ ACA +G++     + + I G G   ++ +  A+ID
Sbjct: 238 VFFDRM--RNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMID 295

Query: 277 MYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVT 336
           MY+KCG +  AR +F+ ++ R+VI+W+ MI  Y +    ++AL LF  ML+S I PN +T
Sbjct: 296 MYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRIT 355

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
           F+S+L AC++ G ++ G+   + +   +    +V  +T ++D+  + G +  A ++ +GM
Sbjct: 356 FVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGM 415

Query: 397 GY-KTLASWNAMISGLAMHGKADKA 420
              K    W A++    +H   D A
Sbjct: 416 PVEKDEVLWGALLGACRIHRHLDLA 440



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 170/334 (50%), Gaps = 17/334 (5%)

Query: 28  LQNQPSLALLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYAL 84
           L +  +  ++  C +++++K    +H   +K GL    F  + L+++ A     + ++  
Sbjct: 149 LDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQ- 207

Query: 85  LVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS 144
            +F  + + +   W  +I   + S  PV ++ F+ RM   G VP+      ++ +CAK+ 
Sbjct: 208 -IFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLG 266

Query: 145 AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
           A+++ K IHA++   G   D  + T++I+MYA+ G +ESAR +F++  +R+ ++++A+I 
Sbjct: 267 AMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIA 326

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN-WVCSLIEGHG 263
            Y   G  + A +LF  M       +PN  T V++L AC+H G +E G  +  S+ + +G
Sbjct: 327 AYGYHGQGEKALELFPMML--RSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYG 384

Query: 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLF 322
           +  ++     ++D+  + G L +A ++ E +  ++D + W  ++G          A  + 
Sbjct: 385 VTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVA 444

Query: 323 RQMLQ-SNIEPNDVTFLSVLPACAYLGALDLGKW 355
           R +L+  + +P     LS + A A       GKW
Sbjct: 445 RSLLKLQSQKPGHYVLLSNIYANA-------GKW 471


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 266/744 (35%), Positives = 402/744 (54%), Gaps = 70/744 (9%)

Query: 33  SLALLSKCTNMQNIKQVHSQIIKTGLH-NTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           S  L S   ++   +Q H+ I++  L  +TQ   S L              +L +   + 
Sbjct: 6   SQCLSSSTASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLP 65

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
            P    ++++I   + S      +  +  +     +P+ +  P  +KSCA + A+  G+Q
Sbjct: 66  HPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQ 125

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +HA     G  +D  V +SL +MY +   +  AR +F++   RD V ++A+I GY+  G 
Sbjct: 126 LHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGL 185

Query: 212 LDDARQLFDEMP---------------------------------IREENFVPNESTVVT 238
           +++A++LF EM                                  +  + F P+ STV  
Sbjct: 186 VEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSC 245

Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD 298
           VL A   +  + +G  V   +   GLGS+  V +A++DMY KCG + +   +F+ +E+ +
Sbjct: 246 VLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEME 305

Query: 299 -----------------------------------VISWNVMIGGYTHTSDYKEALMLFR 323
                                              V++W  +I   +      EAL LFR
Sbjct: 306 IGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFR 365

Query: 324 QMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383
            M    +EPN VT  S++PAC  + AL  GK IH +        ++V + ++LIDMYAKC
Sbjct: 366 DMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCF-SLRRGIFDDVYVGSALIDMYAKC 424

Query: 384 GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
           G I+ A + FD M    L SWNA++ G AMHGKA + + +F  M+  G +PD +TF  VL
Sbjct: 425 GRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVL 484

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
           SAC   GL + G + +N+M +++ I PK++HY C+V LL R G  +EA +++K M  +PD
Sbjct: 485 SACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPD 544

Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563
           A +W +LL +CRVH  L LGE  A+ L  LEP NPG Y+LLSN+YA  G WD+   IR  
Sbjct: 545 ACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREV 604

Query: 564 LNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEV 623
           +  KG++K PG S IEVG  VH  L GD+ HPQ K I E LD+++  ++KSG++P T+ V
Sbjct: 605 MKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLNMQMKKSGYLPKTNFV 664

Query: 624 LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNR 683
           L D++E+ KE  L  HSEKLA+  GL++T PG  ++++KNLR+C +CH+  K+IS++  R
Sbjct: 665 LQDVEEQDKEQILCGHSEKLAVVLGLLNTSPGQPLQVIKNLRICDDCHAVIKVISRLEGR 724

Query: 684 EIIARDRNRFHHFKDGNCSCNDYW 707
           EI  RD NRFHHFKDG CSC D+W
Sbjct: 725 EIYVRDTNRFHHFKDGVCSCGDFW 748


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 250/568 (44%), Positives = 359/568 (63%), Gaps = 15/568 (2%)

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN--GELESARLVFNKSSLRDAVSYTALI 203
           + E KQ+HA VLK     + F  ++L+   A +  G ++ A  +F +        +  +I
Sbjct: 1   MEEFKQVHAQVLKW---ENSFCASNLVATCALSDWGSMDYACSIFRQIDQPGTFEFNTMI 57

Query: 204 TGYASRGYLDDARQLFDEM---PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE 260
            GY +   +++A  L+ EM    +  +NF     T   +  ACA + S+E G  +   I 
Sbjct: 58  RGYVNVMNMENALFLYYEMLERGVESDNF-----TYPALFKACASLRSIEEGMQIHGYIF 112

Query: 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALM 320
             GL  +L V N+LI+MY KCG +  +  +FE +++RDV SW+ +I  +     + E L 
Sbjct: 113 KRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLS 172

Query: 321 LFRQM-LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
           +F +M  + +  P +   +SVL AC +LGALDLG+  H  + +N +++N V + TSLIDM
Sbjct: 173 VFGEMSREGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMN-VIVQTSLIDM 231

Query: 380 YAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439
           Y KCG I+    +F  M  K   S++ MI+GLAMHG+  +AL +FS M+ EGL+PDD+ +
Sbjct: 232 YVKCGCIEKGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVY 291

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME 499
           +GVLSACNHAGL+D G Q FN M  ++ I P +QHYGC+V L+GRAG+ ++A   +++M 
Sbjct: 292 LGVLSACNHAGLVDEGLQCFNRMKLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMP 351

Query: 500 MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559
           +KP+  +W  LL AC+ H  LE+GE  AK L EL   NPG YV+LSNMYA A RW+DVA 
Sbjct: 352 IKPNEVVWRGLLSACKFHHNLEIGEIAAKSLGELNSSNPGDYVVLSNMYARAKRWEDVAK 411

Query: 560 IRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPD 619
           IRT +  KG  + PG S ++V   +++F+  D  HPQ K +YEM+ +++  L+  G+ PD
Sbjct: 412 IRTEMARKGFTQTPGFSLVQVERKIYKFVSQDMSHPQCKGMYEMIHQMEWQLKFEGYSPD 471

Query: 620 TSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISK 679
           TS+VL+D+DEE K   L  HS+KLA+A+ LI T  G  IRI +NLR+C +CH+ TKLIS 
Sbjct: 472 TSQVLFDVDEEEKRQRLKAHSQKLAMAFALIHTSQGAPIRIARNLRMCNDCHTYTKLISV 531

Query: 680 IFNREIIARDRNRFHHFKDGNCSCNDYW 707
           I+ REI  RDRNRFHHFKDG CSC DYW
Sbjct: 532 IYQREITVRDRNRFHHFKDGTCSCRDYW 559



 Score =  223 bits (567), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 136/413 (32%), Positives = 213/413 (51%), Gaps = 38/413 (9%)

Query: 43  MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNII 102
           M+  KQVH+Q++K       F  S L+  CA+S +G + YA  +F  I +P    +N +I
Sbjct: 1   MEEFKQVHAQVLKW---ENSFCASNLVATCALSDWGSMDYACSIFRQIDQPGTFEFNTMI 57

Query: 103 RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE 162
           RG+    +   A+  Y  M+  G   + +T+P + K+CA + +I EG QIH ++ K GLE
Sbjct: 58  RGYVNVMNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLE 117

Query: 163 SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
            D FV  SLINMY + G++E +  VF     RD  S++A+I  +AS G   +   +F EM
Sbjct: 118 GDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEM 177

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
             RE +  P ES +V+VLSAC H+G+L+LG      +  +    N+ V  +LIDMY KCG
Sbjct: 178 S-REGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCG 236

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
            + K   LF+ + K++ +S++VMI G        EAL +F  ML+  ++P+DV +L VL 
Sbjct: 237 CIEKGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLS 296

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           AC + G +D G                            +C N    E   +     T+ 
Sbjct: 297 ACNHAGLVDEG---------------------------LQCFNRMKLEHGIE----PTIQ 325

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
            +  ++  +   G  +KAL     M    ++P+++ + G+LSAC     L+IG
Sbjct: 326 HYGCIVHLMGRAGMLNKALEHIRSM---PIKPNEVVWRGLLSACKFHHNLEIG 375


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 269/734 (36%), Positives = 411/734 (55%), Gaps = 69/734 (9%)

Query: 37   LSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGD---LSYALLVFETI 90
            L  CT + +I    ++H  +IK G     F L   +    ++ +G    L  A  VF  +
Sbjct: 681  LKTCTRVMDIWLGMEIHGCLIKRG-----FDLDVYLRCALMNFYGRCWGLEKANQVFHEM 735

Query: 91   REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
              P  ++WN  I  +  S      ++ + +M  S     T T   +L++C K+ A++  K
Sbjct: 736  PNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAK 795

Query: 151  QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            QIH +V + GL+SD  +   LI+MY++NG+LE AR VF+    R+  S+ ++I+ YA+ G
Sbjct: 796  QIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALG 855

Query: 211  YLDDARQLFDEMP---------------------------------IREENFVPNESTVV 237
            +L+DA  LF E+                                  ++ E F PN S++ 
Sbjct: 856  FLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMT 915

Query: 238  TVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR 297
            +VL A + +G L +G      +  +G   +++V  +LIDMY K   L  A+ +F++++ R
Sbjct: 916  SVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNR 975

Query: 298  DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTF-------------------- 337
            ++ +WN ++ GY+    +++AL L  QM +  I+P+ VT+                    
Sbjct: 976  NIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPN 1035

Query: 338  ----LSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
                  +L ACA L  L  GK IH    +N   + +V + T+LIDMY+K  ++K A +VF
Sbjct: 1036 SASITCLLRACASLSLLQKGKEIHCLSIRNGF-IEDVFVATALIDMYSKSSSLKNAHKVF 1094

Query: 394  DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLD 453
              +  KTLASWN MI G A+ G   +A+S+F+ M   G+ PD ITF  +LSAC ++GL+ 
Sbjct: 1095 RRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIG 1154

Query: 454  IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
             G +YF++MI DY+I P+L+HY CMVDLLGRAG  DEA  L+ TM +KPDA IW +LLG+
Sbjct: 1155 EGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGS 1214

Query: 514  CRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVP 573
            CR+H  L   E+ AK+L +LEP N   Y+L+ N+Y+   RW+D+  +R  +   G++   
Sbjct: 1215 CRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQ 1274

Query: 574  GCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKE 633
              S I++   VH F   +K HP +  IY  L ++ + ++K G+VPD + V  +MDE  K+
Sbjct: 1275 VWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQ 1334

Query: 634  GALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRF 693
              L  H+EKLAI YGLI  K G  IR++KN R+C +CHSA K IS +  RE+  RD  RF
Sbjct: 1335 KILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRF 1394

Query: 694  HHFKDGNCSCNDYW 707
            HHF++G CSCND+W
Sbjct: 1395 HHFREGKCSCNDFW 1408



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 147/536 (27%), Positives = 244/536 (45%), Gaps = 98/536 (18%)

Query: 77   FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPV-VAIKFYVRMILSGFVPNTYTFPF 135
            FGD   A +VF      N + WN+ +     S+  + + ++ +  +   G V ++  +  
Sbjct: 620  FGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSV 679

Query: 136  ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
             LK+C ++  I  G +IH  ++K G + D ++  +L+N Y +   LE A  VF++    +
Sbjct: 680  ALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPE 739

Query: 196  AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNES-TVVTVLSACAHMGSLELGNW 254
            A+ +   I        L    +LF +M     +F+  E+ T+V VL AC  MG+L     
Sbjct: 740  ALLWNEAIILNLQSEKLQKGVELFRKMQF---SFLKAETATIVRVLQACGKMGALNAAKQ 796

Query: 255  VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYT---- 310
            +   +   GL S++ + N LI MYSK G L  AR +F+S+E R+  SWN MI  Y     
Sbjct: 797  IHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGF 856

Query: 311  -----------HTSDYK--------------------EALMLFRQMLQSNIEPNDVTFLS 339
                        +SD K                    E L + ++M     +PN  +  S
Sbjct: 857  LNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTS 916

Query: 340  VLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK 399
            VL A + LG L++GK  H Y+ +N     +V + TSLIDMY K  ++ +A+ VFD M  +
Sbjct: 917  VLQAISELGFLNMGKETHGYVLRNGFDC-DVYVGTSLIDMYVKNHSLXSAQAVFDNMKNR 975

Query: 400  TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS--------------- 444
             + +WN+++SG +  G  + AL L ++M  EG++PD +T+ G++S               
Sbjct: 976  NIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPN 1035

Query: 445  ---------ACNHAGLLDIGRQYF-----NAMIQD--------------------YKISP 470
                     AC    LL  G++       N  I+D                    +K+  
Sbjct: 1036 SASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFR 1095

Query: 471  KLQH-----YGCMVDLLGRAGLFDEAEALLKTME---MKPDAAIWTSLLGACRVHG 518
            ++Q+     + CM+      GL  EA ++   M+   + PDA  +T+LL AC+  G
Sbjct: 1096 RIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSG 1151


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 256/679 (37%), Positives = 407/679 (59%), Gaps = 12/679 (1%)

Query: 36  LLSKCT---NMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +L  C+   ++++ + VH    + GLH   F  + L+++ A        +A  VF  +  
Sbjct: 135 VLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKC--ASFRHAATVFRRMPA 192

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V WN ++ G++L       I   + M      PN  T   +L   A+  A+S+G+ +
Sbjct: 193 RDVVAWNAMLAGYALHGKYSDTIACLLLM-QDDHAPNASTLVALLPLLAQHGALSQGRAV 251

Query: 153 HAHVLKLGLESD----PFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           HA+ ++     D      V T+L++MYA+ G L  A  VF   ++R+ V+++AL+ G+  
Sbjct: 252 HAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVL 311

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
            G + +A  LF +M  +   F+ + ++V + L ACA++  L LG  + +L+   GL ++L
Sbjct: 312 CGRMLEAFSLFKDMLAQGLCFL-SPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDL 370

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
              N+L+ MY+K G + +A  LF+ +  +D +S++ ++ GY       EA  +FR+M   
Sbjct: 371 TAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQAC 430

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
           N++P+  T +S++PAC++L AL  GK  H  +       +  S+  +LIDMYAKCG I  
Sbjct: 431 NVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVR-GIASETSICNALIDMYAKCGRIDL 489

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           + Q+FD M  + + SWN MI+G  +HG   +A +LF  M  +  +PDD+TF+ ++SAC+H
Sbjct: 490 SRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSH 549

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
           +GL+  G+++F+ M   Y I+P+++HY  MVDLL R G  DEA   ++ M +K D  +W 
Sbjct: 550 SGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWG 609

Query: 509 SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568
           +LLGACRVH  ++LG+ V+  + +L PE  G +VLLSN+++ AGR+D+ A +R    ++G
Sbjct: 610 ALLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQG 669

Query: 569 MKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
            KK PGCS IE+   +H F+ GD+ H QS  IY+ LD I   + K G+  DTS VL D++
Sbjct: 670 FKKSPGCSWIEINGSLHAFIGGDRSHAQSSEIYQELDNILVDINKLGYRADTSFVLQDVE 729

Query: 629 EEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIAR 688
           EE KE AL +HSEKLAIA+G+++     TI + KNLRVCG+CH+  K ++ +  R II R
Sbjct: 730 EEEKEKALLYHSEKLAIAFGVLTLSEDKTIFVTKNLRVCGDCHTVIKYMTLVRKRAIIVR 789

Query: 689 DRNRFHHFKDGNCSCNDYW 707
           D NRFHHFK+G CSC D+W
Sbjct: 790 DANRFHHFKNGQCSCGDFW 808



 Score =  233 bits (593), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 152/483 (31%), Positives = 241/483 (49%), Gaps = 29/483 (6%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           GDLS A  +F+ I  P    +N +IR +SL    +    +          PN YTFPF+L
Sbjct: 77  GDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVL 136

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
           K+C+ +  +   + +H H  + GL +D FV T+L+++YA+      A  VF +   RD V
Sbjct: 137 KACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVV 196

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV-- 255
           ++ A++ GYA  G   D       M   +++  PN ST+V +L   A  G+L  G  V  
Sbjct: 197 AWNAMLAGYALHGKYSDTIACLLLM---QDDHAPNASTLVALLPLLAQHGALSQGRAVHA 253

Query: 256 -----CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYT 310
                CSL   H     + V  AL+DMY+KCG LV A  +FE++  R+ ++W+ ++GG+ 
Sbjct: 254 YSVRACSL---HDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFV 310

Query: 311 HTSDYKEALMLFRQMLQSN---IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
                 EA  LF+ ML      + P  V   S L ACA L  L LGK +HA + K+    
Sbjct: 311 LCGRMLEAFSLFKDMLAQGLCFLSPTSVA--SALRACANLSDLCLGKQLHALLAKSGLH- 367

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
            +++   SL+ MYAK G I  A  +FD M  K   S++A++SG   +GKAD+A  +F +M
Sbjct: 368 TDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKM 427

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
               +QPD  T V ++ AC+H   L  G+    ++I    I+ +      ++D+  + G 
Sbjct: 428 QACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVR-GIASETSICNALIDMYAKCGR 486

Query: 488 FDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL-----EPENPGAYV 542
            D +  +   M  + D   W +++    +HG   LG+      L++     EP++     
Sbjct: 487 IDLSRQIFDVMPAR-DIVSWNTMIAGYGIHG---LGKEATALFLDMKHQACEPDDVTFIC 542

Query: 543 LLS 545
           L+S
Sbjct: 543 LIS 545



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 118/259 (45%), Gaps = 16/259 (6%)

Query: 281 CGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSV 340
           CGDL  AR LF+ I    +  +N +I  Y+         +      +   +PN+ TF  V
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 341 LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT 400
           L AC+ L  L   + +H +  +      ++ + T+L+D+YAKC + + A  VF  M  + 
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGLH-ADLFVSTALVDVYAKCASFRHAATVFRRMPARD 194

Query: 401 LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFN 460
           + +WNAM++G A+HGK    ++    ++ +   P+  T V +L      G L  GR    
Sbjct: 195 VVAWNAMLAGYALHGKYSDTIACL-LLMQDDHAPNASTLVALLPLLAQHGALSQGRA--- 250

Query: 461 AMIQDYKISPKLQH--------YGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
             +  Y +     H           ++D+  + G    A  + + M ++ +   W++L+G
Sbjct: 251 --VHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVR-NEVTWSALVG 307

Query: 513 ACRVHGRLELGESVAKHLL 531
              + GR+    S+ K +L
Sbjct: 308 GFVLCGRMLEAFSLFKDML 326


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/508 (45%), Positives = 334/508 (65%), Gaps = 32/508 (6%)

Query: 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG-------- 282
           PN+ T+ TV+ ACA + SLE G    + I   G  S++ V  AL+ MY++CG        
Sbjct: 8   PNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHV 67

Query: 283 -----------------------DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEAL 319
                                  D+ KA  LF  + +RDV+SW  +I GY       E+L
Sbjct: 68  FDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESL 127

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
            +F QM ++ ++ +     SVL ACA L AL+LG+  HAY+ ++   L+ + + ++L+DM
Sbjct: 128 NVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALD-IVVGSALVDM 186

Query: 380 YAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439
           YAK G+++ A QVFD M  +   SWN++I+G A HG+ + A+ LF +M+  G++P++I+F
Sbjct: 187 YAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISF 246

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME 499
           VGVLSAC+H GL++ GR YFN M Q+Y I P + HY CM+DLLGRAG  DEAE  +  M 
Sbjct: 247 VGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMP 306

Query: 500 MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559
           ++PD ++W +LLGACR+HG  EL + +A+HLL +E +  G YVLLSN+YA AG+WDD A 
Sbjct: 307 VEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDAAK 366

Query: 560 IRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPD 619
           +R  + D+G+ K PG S IEV +++H F+ G+  HPQ K I+E L+ +   ++ +G+VP+
Sbjct: 367 VRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMKAAGYVPN 426

Query: 620 TSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISK 679
            + VL D++++ KE +LSHHSEKLAIA+G+I+T PGTTIR+ KNLRVCG+CH+  K IS 
Sbjct: 427 KNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRVCGDCHTVIKFISL 486

Query: 680 IFNREIIARDRNRFHHFKDGNCSCNDYW 707
            F R+I+ RD NRFHHFKDG CSC DYW
Sbjct: 487 NFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 192/345 (55%), Gaps = 34/345 (9%)

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           M+  G  PN +T   ++K+CA I+++ +GKQ H +++K+G ESD  V T+L++MYA+ G 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 181 LESARLVFNK-------------------------------SSLRDAVSYTALITGYASR 209
           LE A  VF+K                                S RD VS+TA+I GYA  
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
           GY D++  +F++M  R+     +   + +VLSACA + +LELG    + +   G   ++ 
Sbjct: 121 GYGDESLNVFNQM--RKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIV 178

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           V +AL+DMY+K G +  A  +F+ + +R+ +SWN +I G        +A++LF QMLQ+ 
Sbjct: 179 VGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAG 238

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           I+PN+++F+ VL AC++ G ++ G+     + +N+  + +VS +T +ID+  + G +  A
Sbjct: 239 IKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEA 298

Query: 390 EQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
           E   +GM  +  ++ W A++    +HG  + A  +   ++G  +Q
Sbjct: 299 ENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQ 343



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 157/315 (49%), Gaps = 41/315 (13%)

Query: 30  NQPSLALLSK-CTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALL 85
           NQ +L+ + K C ++ ++   KQ H+ IIK G  +     + L+ + A    G L  A  
Sbjct: 9   NQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYA--RCGSLEDAGH 66

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRM----------ILSGFVPNTY---- 131
           VF+ + E +   WN +I GH+ +     A+K +  M          +++G+  N Y    
Sbjct: 67  VFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDES 126

Query: 132 -----------------TFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINM 174
                                +L +CA ++A+  G+Q HA+V++ G   D  V ++L++M
Sbjct: 127 LNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDM 186

Query: 175 YAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNES 234
           YA++G +E A  VF+K   R+ VS+ ++ITG A  G  +DA  LF++M   +    PNE 
Sbjct: 187 YAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQML--QAGIKPNEI 244

Query: 235 TVVTVLSACAHMGSLELGNWVCSLI-EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
           + V VLSAC+H G +  G    +L+ + +G+  ++     +ID+  + G L +A +    
Sbjct: 245 SFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFING 304

Query: 294 IE-KRDVISWNVMIG 307
           +  + DV  W  ++G
Sbjct: 305 MPVEPDVSVWGALLG 319


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 249/666 (37%), Positives = 383/666 (57%), Gaps = 39/666 (5%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV-PNTYTFPFI 136
           GDL  A  +F+ I +P+   W  +I   +     + AI++Y        V P+      +
Sbjct: 25  GDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLSV 84

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
            K+CA +  +   K++H   ++ G  SD  +  +LI+MY +    E ARLVF     RD 
Sbjct: 85  AKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDV 144

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           +S+T++ + Y + G L +A   F +M +  E   PN  TV ++L AC  +  L+ G  V 
Sbjct: 145 ISWTSMASCYVNCGLLREALGAFRKMGLNGER--PNSVTVSSILPACTDLKDLKSGREVH 202

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMI---------- 306
             +  +G+G N+ V++AL++MY+ C  + +A+ +F+S+ +RD +SWNV+I          
Sbjct: 203 GFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECE 262

Query: 307 -------------------------GGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
                                    GG       ++AL +  +M  S  +PN +T  SVL
Sbjct: 263 KGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVL 322

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
           PAC  L +L  GK IH YI + H    +++  T+L+ MYAKCG+++ + +VF  M  +  
Sbjct: 323 PACTNLESLRGGKQIHGYIFR-HWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDT 381

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
            SWN MI   +MHG  ++AL LF  M+  G++P+ +TF GVLS C+H+ L+D G   F++
Sbjct: 382 VSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDS 441

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
           M +D+ + P   H+ CMVD+L RAG  +EA   +K M ++P A  W +LLG CRV+  +E
Sbjct: 442 MSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVE 501

Query: 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
           LG   A  L E+E +NPG YVLLSN+   A  W + +  R  + D+G+ K PGCS I+V 
Sbjct: 502 LGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQVR 561

Query: 582 SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
           + VH F+VGDK + QS  IY  LD +   +  +G++P+T  VL D+D+E KE  L +HSE
Sbjct: 562 NRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQEEKEEVLCNHSE 621

Query: 642 KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
           KLA+A+G+++    ++IR+ KNLR+CG+CH+A K ++KI   +II RD  RFHHF+DG C
Sbjct: 622 KLAVAFGVLNLNGESSIRVFKNLRICGDCHNAIKFMAKIVGVKIIVRDSLRFHHFRDGLC 681

Query: 702 SCNDYW 707
           SC D+W
Sbjct: 682 SCQDFW 687



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 119/400 (29%), Positives = 189/400 (47%), Gaps = 41/400 (10%)

Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ 217
           KL     P +    I +Y+ +G+L+ AR +F+K    D  ++T LI+     G   +A Q
Sbjct: 4   KLPTSLPPHLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQ 63

Query: 218 LFDEMPIREENFV-PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALID 276
            +++   R +N V P++  +++V  ACA +  +     V       G  S++ + NALID
Sbjct: 64  YYND--FRHKNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALID 121

Query: 277 MYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVT 336
           MY KC     AR +FE +  RDVISW  M   Y +    +EAL  FR+M  +   PN VT
Sbjct: 122 MYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVT 181

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
             S+LPAC  L  L  G+ +H ++ +N     NV + ++L++MYA C +I+ A+ VFD M
Sbjct: 182 VSSILPACTDLKDLKSGREVHGFVVRNGMG-GNVFVSSALVNMYASCLSIRQAQLVFDSM 240

Query: 397 GYK-----------------------------------TLASWNAMISGLAMHGKADKAL 421
             +                                     ASWNA+I G   +G+ +KAL
Sbjct: 241 SRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKAL 300

Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481
            + SRM   G +P+ IT   VL AC +   L  G+Q    + + +     L     +V +
Sbjct: 301 EVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHW-FFQDLTTTTALVFM 359

Query: 482 LGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
             + G  + +  +  +M  K D   W +++ A  +HG  E
Sbjct: 360 YAKCGDLELSRRVF-SMMTKRDTVSWNTMIIATSMHGNGE 398



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 151/336 (44%), Gaps = 22/336 (6%)

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
           H+    I +YS  GDL +AR LF+ I + D+ +W ++I   T      EA+  +      
Sbjct: 12  HLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHK 71

Query: 329 N-IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
           N +EP+ +  LSV  ACA L  +   K +H    +     ++V L  +LIDMY KC   +
Sbjct: 72  NCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIR-FGFCSDVLLGNALIDMYGKCRCSE 130

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
            A  VF+GM ++ + SW +M S     G   +AL  F +M   G +P+ +T   +L AC 
Sbjct: 131 GARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACT 190

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
               L  GR+    ++++  +   +     +V++        +A+ +  +M  + D   W
Sbjct: 191 DLKDLKSGREVHGFVVRN-GMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRR-DTVSW 248

Query: 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA----GRWDDVATIRTR 563
             L+ A  ++   E G SV   ++    E  G      N   G     GR +    + +R
Sbjct: 249 NVLITAYFLNKECEKGLSVFGRMMS---EGVGLNYASWNAVIGGCMQNGRTEKALEVLSR 305

Query: 564 LNDKGMKK--------VPGCSSIEV---GSVVHEFL 588
           + + G K         +P C+++E    G  +H ++
Sbjct: 306 MQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYI 341


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 277/723 (38%), Positives = 419/723 (57%), Gaps = 78/723 (10%)

Query: 42  NMQNIKQVHSQIIKTG---LH--NTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQV 96
            ++   ++H+++  +G   LH  + +  L+ L+      P   L YAL +F+ +  P+  
Sbjct: 11  TVRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPL-HLRYALHLFDRM-PPSTF 68

Query: 97  IWNNIIRGHSLSSS-PVVAIKFYVRMILSGFVPNTYTFPFILK---SCAKISAISEGKQI 152
           +++  +R  S + S P      + RM  +G  P+ +TF F+ K   S ++  ++     +
Sbjct: 69  LFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTML 128

Query: 153 HAHVLKLGLESD-PFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           HA  L+  L S  PFV  SLI+MY + G    AR  F++  ++DAV++T LI+G A  G 
Sbjct: 129 HAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGM 188

Query: 212 LDDARQLFDEMPIRE-----------------------------ENFVPNESTVVTVLSA 242
           L D + L  + P+R+                                 P+E TV+ VLSA
Sbjct: 189 LCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSA 248

Query: 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA--------------- 287
           CA +  LELG  +  L+E  G+ ++ ++  ALIDMY+KCGD   A               
Sbjct: 249 CAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQS 308

Query: 288 -----------------RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
                            R LF+ +E RD+I++N M+ GY H+   +EAL+LF  M + ++
Sbjct: 309 WNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDL 368

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL--NNVSLWTSLIDMYAKCGNIKA 388
             ++ T +++L ACA LGAL  G+ +HA I+   Q+L   ++ L T+L+DMY KCG +  
Sbjct: 369 RVDNFTVVNLLTACASLGALQQGRALHACIE---QRLVEADIYLGTALLDMYMKCGRVDE 425

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A  VF  MG + + +W AMI+GLA +G    AL  F +M  +G QP+ ++++ VL+AC+H
Sbjct: 426 ATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSH 485

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
           + LL+ GR YF+ M   Y I P+++HYGCM+DLLGR+GL DEA  L+KTM ++P+A IW 
Sbjct: 486 SCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWA 545

Query: 509 SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568
           S+L ACRVH  ++L +  A+HLL+LEP+  G YV L N+Y  + +W++ + IR  + ++ 
Sbjct: 546 SILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQ 605

Query: 569 MKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
           +KK  G SSI V   VH+F+V DK HP+   I  ML+EI   L+  G+ P TS++  D+D
Sbjct: 606 VKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQITVDVD 665

Query: 629 EEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIAR 688
           EE KE AL  HSEKLAIA+GLI+  P   + I KNLRVC +CHSA KLIS+++NREII R
Sbjct: 666 EEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNREIIVR 725

Query: 689 DRN 691
           DR+
Sbjct: 726 DRS 728


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 270/691 (39%), Positives = 387/691 (56%), Gaps = 17/691 (2%)

Query: 23  PPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSY 82
           PP     N   L L SKC  +   ++    I    +    F+ + +I   A      +++
Sbjct: 40  PPSTYFSNHFIL-LYSKCGRLAWARKAFQDISDPNV----FSFNAIIAAYAKESRPLIAH 94

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
            L  F+ I EP+ V +N +I  ++       A+  +  M   G   + +T   ++ +C  
Sbjct: 95  QL--FDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACCD 152

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF-NKSSLRDAVSYTA 201
              +    Q+H+  +  G +S   V+ +L+  Y +NG+L+ A+ VF     +RD VS+ +
Sbjct: 153 DVGLI--GQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNS 210

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
           +I  Y        A  LF EM  R  N   +  T+ +VL+A   +  L  G      +  
Sbjct: 211 MIVAYGQHQEGSKALGLFQEMVRRGLNV--DMFTLASVLTAFTCLEDLSGGLQFHGQLIK 268

Query: 262 HGLGSNLHVTNALIDMYSKCGD-LVKARDLFESIEKRDVISWNVMIGGYTHTSDY-KEAL 319
            G   N HV + LID+YSKCG  +   R +FE I + D++ WN M+ GY+   ++ ++AL
Sbjct: 269 TGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDAL 328

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
             FRQM      PND +F+ V+ AC+ L +   GK IH+   K+    N +S+  +LI M
Sbjct: 329 ECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAM 388

Query: 380 YAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439
           Y+KCGN++ A ++FD M      S N+MI+G A HG   ++L LF  M+   + P  ITF
Sbjct: 389 YSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITF 448

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME 499
           + VLSAC H G ++ G  YFN M + + I P+ +HY CM+DLLGRAG   EAE L+  M 
Sbjct: 449 ISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMP 508

Query: 500 MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559
             P +  W SLLGACR HG +EL    A  +L+LEP N   YV+LSNMYA AGRW++VAT
Sbjct: 509 FNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVAT 568

Query: 560 IRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPD 619
           +R  + D+G+KK PGCS IEV   +H F+  D  HP  K IYE L+E+   ++++G+VPD
Sbjct: 569 VRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPD 628

Query: 620 TSEVLYDMDEEW---KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKL 676
               L   D      KE  L HHSEKLA+A+GLISTK G  + +VKNLR+CG+CH+A K 
Sbjct: 629 VRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICGDCHNAIKF 688

Query: 677 ISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           IS I  REI  RD +RFH FK+G CSC DYW
Sbjct: 689 ISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 128/503 (25%), Positives = 214/503 (42%), Gaps = 77/503 (15%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           F  +LK+C     +S GK +H+  +K  +    +     I +Y++ G L  AR  F   S
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMP----------------------------- 223
             +  S+ A+I  YA       A QLFD++P                             
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
           +RE     +  T+  V++AC     + L   + S+    G  S + V NAL+  Y K GD
Sbjct: 131 MREMGLDMDXFTLSAVITACCD--DVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGD 188

Query: 284 LVKARDLFESIEK-RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
           L  A+ +F  +   RD +SWN MI  Y    +  +AL LF++M++  +  +  T  SVL 
Sbjct: 189 LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLT 248

Query: 343 ACAYLGALDLGKWIHAYIDKN--HQKLNNVSLWTSLIDMYAKC-GNIKAAEQVFDGMGYK 399
           A   L  L  G   H  + K   HQ   N  + + LID+Y+KC G +    +VF+ +   
Sbjct: 249 AFTCLEDLSGGLQFHGQLIKTGFHQ---NSHVGSGLIDLYSKCGGGMSDCRKVFEEITEP 305

Query: 400 TLASWNAMISGLAMHGK-ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQY 458
            L  WN M+SG + + +  + AL  F +M G G +P+D +FV V+SAC++      G+Q 
Sbjct: 306 DLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQI 365

Query: 459 FNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-------------------- 498
            +  ++    S ++     ++ +  + G   +A  L   M                    
Sbjct: 366 HSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGI 425

Query: 499 --------------EMKPDAAIWTSLLGACRVHGRLELGE---SVAKHLLELEPENPGAY 541
                         ++ P +  + S+L AC   GR+E G    ++ K    +EPE    Y
Sbjct: 426 EMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAE-HY 484

Query: 542 VLLSNMYAGAGRWDDVATIRTRL 564
             + ++   AG+  +   +  R+
Sbjct: 485 SCMIDLLGRAGKLSEAENLIARM 507


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 270/691 (39%), Positives = 387/691 (56%), Gaps = 17/691 (2%)

Query: 23  PPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSY 82
           PP     N   L L SKC  +   ++    I    +    F+ + +I   A      +++
Sbjct: 40  PPSTYFSNHFIL-LYSKCGRLAWARKAFQDISDPNV----FSFNAIIAAYAKESRPLIAH 94

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
            L  F+ I EP+ V +N +I  ++       A+  +  M   G   + +T   ++ +C  
Sbjct: 95  QL--FDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACCD 152

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF-NKSSLRDAVSYTA 201
              +    Q+H+  +  G +S   V+ +L+  Y +NG+L+ A+ VF     +RD VS+ +
Sbjct: 153 DVGLI--GQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNS 210

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
           +I  Y        A  LF EM  R  N   +  T+ +VL+A   +  L  G      +  
Sbjct: 211 MIVAYGQHQEGSKALGLFQEMVRRGLNV--DMFTLASVLTAFTCLEDLSGGLQFHGQLIK 268

Query: 262 HGLGSNLHVTNALIDMYSKCGD-LVKARDLFESIEKRDVISWNVMIGGYTHTSDY-KEAL 319
            G   N HV + LID+YSKCG  +   R +FE I + D++ WN M+ GY+   ++ ++AL
Sbjct: 269 TGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDAL 328

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
             FRQM      PND +F+ V+ AC+ L +   GK IH+   K+    N +S+  +LI M
Sbjct: 329 ECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAM 388

Query: 380 YAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439
           Y+KCGN++ A ++FD M      S N+MI+G A HG   ++L LF  M+   + P  ITF
Sbjct: 389 YSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITF 448

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME 499
           + VLSAC H G ++ G  YFN M + + I P+ +HY CM+DLLGRAG   EAE L+  M 
Sbjct: 449 ISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMP 508

Query: 500 MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559
             P +  W SLLGACR HG +EL    A  +L+LEP N   YV+LSNMYA AGRW++VAT
Sbjct: 509 FNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVAT 568

Query: 560 IRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPD 619
           +R  + D+G+KK PGCS IEV   +H F+  D  HP  K IYE L+E+   ++++G+VPD
Sbjct: 569 VRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPD 628

Query: 620 TSEVLYDMDEEW---KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKL 676
               L   D      KE  L HHSEKLA+A+GLISTK G  + +VKNLR+CG+CH+A K 
Sbjct: 629 VRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICGDCHNAIKF 688

Query: 677 ISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           IS I  REI  RD +RFH FK+G CSC DYW
Sbjct: 689 ISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 128/503 (25%), Positives = 214/503 (42%), Gaps = 77/503 (15%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           F  +LK+C     +S GK +H+  +K  +    +     I +Y++ G L  AR  F   S
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMP----------------------------- 223
             +  S+ A+I  YA       A QLFD++P                             
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
           +RE     +  T+  V++AC     + L   + S+    G  S + V NAL+  Y K GD
Sbjct: 131 MREMGLDMDGFTLSAVITACCD--DVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGD 188

Query: 284 LVKARDLFESIEK-RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
           L  A+ +F  +   RD +SWN MI  Y    +  +AL LF++M++  +  +  T  SVL 
Sbjct: 189 LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLT 248

Query: 343 ACAYLGALDLGKWIHAYIDKN--HQKLNNVSLWTSLIDMYAKC-GNIKAAEQVFDGMGYK 399
           A   L  L  G   H  + K   HQ   N  + + LID+Y+KC G +    +VF+ +   
Sbjct: 249 AFTCLEDLSGGLQFHGQLIKTGFHQ---NSHVGSGLIDLYSKCGGGMSDCRKVFEEITEP 305

Query: 400 TLASWNAMISGLAMHGK-ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQY 458
            L  WN M+SG + + +  + AL  F +M G G +P+D +FV V+SAC++      G+Q 
Sbjct: 306 DLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQI 365

Query: 459 FNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-------------------- 498
            +  ++    S ++     ++ +  + G   +A  L   M                    
Sbjct: 366 HSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGI 425

Query: 499 --------------EMKPDAAIWTSLLGACRVHGRLELGE---SVAKHLLELEPENPGAY 541
                         ++ P +  + S+L AC   GR+E G    ++ K    +EPE    Y
Sbjct: 426 EMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAE-HY 484

Query: 542 VLLSNMYAGAGRWDDVATIRTRL 564
             + ++   AG+  +   +  R+
Sbjct: 485 SCMIDLLGRAGKLSEAENLIARM 507


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/580 (43%), Positives = 366/580 (63%), Gaps = 9/580 (1%)

Query: 135 FILKSCAKI-----SAISEGKQIHAHVLKLGLE-SDPFVHTSLI-NMYAQNGELESARLV 187
           FIL+ C  +     S+ S+ KQIHA  ++ G+   +P  +  LI  + + +  +  A  +
Sbjct: 32  FILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQI 91

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
           FN+    +  ++  +I G+A       A +LF +M     + +P+  T   +  A A + 
Sbjct: 92  FNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHA-ASSILPDTHTFPFLFKAVAKLM 150

Query: 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG 307
            + LG  + S++  +G  S   V N+L+ MYS  G    A  +FE +  RD ++WN +I 
Sbjct: 151 DVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVIN 210

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
           G+       EAL L+R+M    +EP+  T +S+L AC  LGAL LG+ +H Y+ K    +
Sbjct: 211 GFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKV-GLV 269

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
            N     +L+D+Y+KCGN + A++VFD M  +++ SW ++I GLA++G  ++AL LF  +
Sbjct: 270 QNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGEL 329

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
             +GL+P +ITFVGVL AC+H G+LD G  YF  M ++Y I P+++H+GCMVDLL RAG 
Sbjct: 330 ERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGK 389

Query: 488 FDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547
             +A   ++ M + P+A IW +LLGAC +HG LELGE     +  LE  + G +VLLSN+
Sbjct: 390 VGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNL 449

Query: 548 YAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEI 607
           YA   RW DV  +R  +  KG+KK PG S +E+ + V+EF++GD+ HPQS+  Y ML +I
Sbjct: 450 YASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKI 509

Query: 608 DALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVC 667
             LL+  G+VP T  VL D++EE KE ALSHH+EK+AIA+ L++T PGT IRI+KNLRVC
Sbjct: 510 TQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVC 569

Query: 668 GNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            +CH A KLISK+F REII RDR+RFHHFKDG+CSC DYW
Sbjct: 570 ADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 127/385 (32%), Positives = 214/385 (55%), Gaps = 5/385 (1%)

Query: 34  LALLSKCTNMQN-IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           ++L+  C + Q+ +KQ+H+  I+ G+       +K +    VS    +S+A  +F  I+ 
Sbjct: 38  ISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQA 97

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRM-ILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           PN   WN +IRG + S +P  A++ + +M   S  +P+T+TFPF+ K+ AK+  +S G+ 
Sbjct: 98  PNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEG 157

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IH+ V++ G +S  FV  SL++MY+  G  ESA  VF   S RD V++ ++I G+A  G 
Sbjct: 158 IHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGM 217

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
            ++A  L+ EM    E   P+  T+V++LSAC  +G+L LG  V   +   GL  N H +
Sbjct: 218 PNEALTLYREMG--SEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHAS 275

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           NAL+D+YSKCG+   A+ +F+ +E+R V+SW  +I G        EAL LF ++ +  ++
Sbjct: 276 NALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLK 335

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+++TF+ VL AC++ G LD G      + + +  L  +     ++D+  + G +  A  
Sbjct: 336 PSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYD 395

Query: 392 VFDGMGYKTLAS-WNAMISGLAMHG 415
               M     A  W  ++    +HG
Sbjct: 396 YIRNMPVPPNAVIWRTLLGACTIHG 420


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 253/614 (41%), Positives = 367/614 (59%), Gaps = 37/614 (6%)

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV--PNTYTFPFILKSCAKI 143
           V +   +   V +N ++RG + +S    A+  +  M   G    P+ YT+P  LKSCA  
Sbjct: 76  VLDASPDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAAT 135

Query: 144 SAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALI 203
             +  G+QIH+   +LGL+ + FV  S I+MYA+ G  + A  +F +   RD VS+ A+I
Sbjct: 136 DGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMI 195

Query: 204 TGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG 263
           +G+A  G    A  +F E+ +  +   P+  T+ ++L +   MG                
Sbjct: 196 SGFAHAGLFGRAMDVFREL-VALQCPKPDAGTMASILPS---MGK--------------- 236

Query: 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFR 323
                          ++  D+   + +F+ +  + +ISWN M+  YT+   + EA+ LF 
Sbjct: 237 ---------------ARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFM 281

Query: 324 QMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383
           +M +  IEP+ VT  +VLP+C  + AL LGK IH  I K  +  +++ L  +L+DMYA C
Sbjct: 282 RMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVI-KRRRMCSSMLLENALMDMYANC 340

Query: 384 GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
           G +K A  VFD MG + + SW ++IS    HG   +A+ LF +M G+GL+PD I FV +L
Sbjct: 341 GCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAIL 400

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
           +AC+HAGLLD+G+ YF +M  ++ I+PKL+HY CMVDLLGRAG   EA   +  M +KP+
Sbjct: 401 AACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPN 460

Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563
             +W +LLGACR+H  +++G   A  LL L P+  G YVLLSN+YA AGRW DV+ +R+ 
Sbjct: 461 ERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSV 520

Query: 564 LNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEV 623
           +  KG+KK+PG S+ E+G  VH F +GD  HPQSK IY+ L E+   + + G+ P+    
Sbjct: 521 MESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNPEVEAT 580

Query: 624 LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNR 683
           L+D++EE KEG LS HSEKLAIA+ LI+T PGT IRI  NLR C +CH A KLIS I  R
Sbjct: 581 LHDVEEEDKEGHLSVHSEKLAIAFLLINTNPGTPIRITMNLRTCSDCHHAAKLISTIAGR 640

Query: 684 EIIARDRNRFHHFK 697
           EII +D NR H+ K
Sbjct: 641 EIILKDVNRIHYMK 654


>gi|302785459|ref|XP_002974501.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
 gi|300158099|gb|EFJ24723.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
          Length = 635

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/585 (40%), Positives = 356/585 (60%), Gaps = 9/585 (1%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P+     + L+ C   +AI+EGK+IH H++  G +S  ++   L+ MY + G L++A+ V
Sbjct: 55  PSAEVLAWYLRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNLLVEMYGKCGSLQAAKSV 114

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
           F+ +  R+  S+T ++  +A  G+  DA  L + M +  E   PN  T + +L A A + 
Sbjct: 115 FHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDL--EGISPNSITFIELLGAVAALS 172

Query: 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG 307
            L+ G  +   I   G  +++ V N LI+MY+KC  L  A  +FES+  R VI+W  ++ 
Sbjct: 173 WLDRGRALHRRIACCGFLADIFVANCLINMYAKCRSLADACSVFESLTSRSVIAWTALVA 232

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
            Y     +++AL +F  M    +EP +VTF++V+  CA +    +G+ +H  ID   +  
Sbjct: 233 AYALNGFFRDALKVFLLMTLDGVEPTEVTFVTVVDVCADIAVFGIGREVHGVIDARSEA- 291

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF--- 424
            NV +  +LI+MY KC +   A +VFD M  K + +WN+MI+    +G   +AL ++   
Sbjct: 292 -NVCVGNALINMYGKCASPDEARKVFDAMQRKDIITWNSMIAVYGQNGYGFQALEIYKRM 350

Query: 425 --SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482
             SRM   G+  DDITF+GVL AC+HAGL+    + +++MI DY   P     GC++DLL
Sbjct: 351 QESRMTILGITHDDITFIGVLFACSHAGLVKDSCKLYSSMIGDYGFKPTSLQCGCLIDLL 410

Query: 483 GRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV 542
           GRAG  DEAE  + +M   PD  IWT LLGAC  H  +E     A  ++ L P + G+YV
Sbjct: 411 GRAGWLDEAEEFINSMPYHPDHTIWTILLGACITHADVERAARAADRIMALRPTDSGSYV 470

Query: 543 LLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYE 602
            LSN+YA A RWDD+A +R  ++ +G+ K+ G SSIE+G V+HEF+ GD  HP+ + IYE
Sbjct: 471 ALSNLYALAERWDDMARMRKLMDQRGVFKMAGKSSIEIGGVLHEFIAGDTSHPRKREIYE 530

Query: 603 MLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVK 662
            L  I+ ++ + G+VPD   VL++   E KE     HSE+LAIA+G+IS+  GT +RI+K
Sbjct: 531 ELRRIEGVIRERGYVPDIKAVLHNAAREAKEKMCCFHSERLAIAFGMISSPGGTELRIMK 590

Query: 663 NLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           NLRVC +CHSATK+ISK   R+II RD NRFH F++G+CSC DYW
Sbjct: 591 NLRVCPDCHSATKIISKFSGRKIIVRDANRFHEFRNGSCSCEDYW 635



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/410 (28%), Positives = 201/410 (49%), Gaps = 18/410 (4%)

Query: 37  LSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L +C +   I   K++H  I+  G  ++++  + L+E+      G L  A  VF      
Sbjct: 64  LRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNLLVEM--YGKCGSLQAAKSVFHITPRR 121

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           N   W  ++   + +   + A+     M L G  PN+ TF  +L + A +S +  G+ +H
Sbjct: 122 NVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPNSITFIELLGAVAALSWLDRGRALH 181

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
             +   G  +D FV   LINMYA+   L  A  VF   + R  +++TAL+  YA  G+  
Sbjct: 182 RRIACCGFLADIFVANCLINMYAKCRSLADACSVFESLTSRSVIAWTALVAAYALNGFFR 241

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           DA ++F  M +  +   P E T VTV+  CA +    +G  V  +I+     +N+ V NA
Sbjct: 242 DALKVFLLMTL--DGVEPTEVTFVTVVDVCADIAVFGIGREVHGVIDARS-EANVCVGNA 298

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN---- 329
           LI+MY KC    +AR +F++++++D+I+WN MI  Y       +AL ++++M +S     
Sbjct: 299 LINMYGKCASPDEARKVFDAMQRKDIITWNSMIAVYGQNGYGFQALEIYKRMQESRMTIL 358

Query: 330 -IEPNDVTFLSVLPACAYLGAL-DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
            I  +D+TF+ VL AC++ G + D  K   + I     K  ++     LID+  + G + 
Sbjct: 359 GITHDDITFIGVLFACSHAGLVKDSCKLYSSMIGDYGFKPTSLQC-GCLIDLLGRAGWLD 417

Query: 388 AAEQVFDGMGYKTLAS-WNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
            AE+  + M Y    + W  ++     H   ++A     R++   L+P D
Sbjct: 418 EAEEFINSMPYHPDHTIWTILLGACITHADVERAARAADRIM--ALRPTD 465



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 150/301 (49%), Gaps = 9/301 (2%)

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
           L DA QL ++  +      P+   +   L  C    ++  G  +   I   G  S+ ++ 
Sbjct: 41  LRDAVQLLEDRSVS-----PSAEVLAWYLRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLC 95

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N L++MY KCG L  A+ +F    +R+V SW +M+  + H   Y +AL L   M    I 
Sbjct: 96  NLLVEMYGKCGSLQAAKSVFHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGIS 155

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           PN +TF+ +L A A L  LD G+ +H  I      L ++ +   LI+MYAKC ++  A  
Sbjct: 156 PNSITFIELLGAVAALSWLDRGRALHRRI-ACCGFLADIFVANCLINMYAKCRSLADACS 214

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VF+ +  +++ +W A+++  A++G    AL +F  M  +G++P ++TFV V+  C    +
Sbjct: 215 VFESLTSRSVIAWTALVAAYALNGFFRDALKVFLLMTLDGVEPTEVTFVTVVDVCADIAV 274

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
             IGR+    +  D +    +     ++++ G+    DEA  +   M+ K D   W S++
Sbjct: 275 FGIGREVHGVI--DARSEANVCVGNALINMYGKCASPDEARKVFDAMQRK-DIITWNSMI 331

Query: 512 G 512
            
Sbjct: 332 A 332


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 245/589 (41%), Positives = 365/589 (61%), Gaps = 34/589 (5%)

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           + IH H +K     DPFV   L+ +Y +   ++ A  +F  +   +   YT+LI G+ S 
Sbjct: 44  QSIHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSF 103

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
           G   DA  LF +M +R+     N + V  +L AC    +L  G  V  L+   GLG +  
Sbjct: 104 GSYTDAINLFCQM-VRKHVLADNYA-VTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRS 161

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG---------------------- 307
           +   L+++Y KCG L  AR +F+ + +RDV++  VMIG                      
Sbjct: 162 IALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRD 221

Query: 308 ---------GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
                    G     ++   L +FR+M    +EPN+VTF+ VL ACA LGAL+LG+WIHA
Sbjct: 222 TVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHA 281

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKAD 418
           Y+ K   ++N   +  +LI+MY++CG+I  A+ +FDG+  K ++++N+MI GLA+HGK+ 
Sbjct: 282 YMRKCGVEVNRF-VAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSI 340

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478
           +A+ LFS M+ E ++P+ ITFVGVL+AC+H GL+D+G + F +M   + I P+++HYGCM
Sbjct: 341 EAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCM 400

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
           VD+LGR G  +EA   +  M ++ D  +  SLL AC++H  + +GE VAK L E    + 
Sbjct: 401 VDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLLSEHYRIDS 460

Query: 539 GAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSK 598
           G++++LSN YA  GRW   A +R ++   G+ K PGCSSIEV + +HEF  GD  HP+ K
Sbjct: 461 GSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNNAIHEFFSGDLRHPERK 520

Query: 599 HIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTI 658
            IY+ L+E++ L +  G++P T   L+D+D+E KE AL+ HSE+LAI YGL+ST+  TT+
Sbjct: 521 RIYKKLEELNYLTKFEGYLPATEVALHDIDDEQKELALAVHSERLAICYGLVSTEAYTTL 580

Query: 659 RIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           R+ KNLR+C +CH+  KLI+KI  R+I+ RDRNRFHHF++G CSC DYW
Sbjct: 581 RVGKNLRICDDCHAMIKLIAKITRRKIVVRDRNRFHHFENGECSCKDYW 629



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 125/432 (28%), Positives = 217/432 (50%), Gaps = 39/432 (9%)

Query: 42  NMQNIKQVHSQIIKTGLHNTQFALSKLIEI-CAVSPFGDLSYALLVFETIREPNQVIWNN 100
           N ++++ +H   IKT      F   +L+ + C V+    + +A+ +F   + PN  ++ +
Sbjct: 39  NPKHVQSIHCHAIKTRTSQDPFVAFELLRVYCKVNY---IDHAIKLFRCTQNPNVYLYTS 95

Query: 101 IIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG 160
           +I G     S   AI  + +M+    + + Y    +LK+C    A+  GK++H  VLK G
Sbjct: 96  LIDGFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSG 155

Query: 161 LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD 220
           L  D  +   L+ +Y + G LE AR +F+    RD V+ T +I      G +++A ++F+
Sbjct: 156 LGLDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFN 215

Query: 221 EMPIRE-----------------------------ENFVPNESTVVTVLSACAHMGSLEL 251
           EM  R+                             +   PNE T V VLSACA +G+LEL
Sbjct: 216 EMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALEL 275

Query: 252 GNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311
           G W+ + +   G+  N  V  ALI+MYS+CGD+ +A+ LF+ +  +DV ++N MIGG   
Sbjct: 276 GRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLAL 335

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
                EA+ LF +ML+  + PN +TF+ VL AC++ G +DLG  I   ++  H     V 
Sbjct: 336 HGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVE 395

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSL---FSRMI 428
            +  ++D+  + G +   E+ FD +G   + + + M+  L    K  K + +    ++++
Sbjct: 396 HYGCMVDILGRVGRL---EEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLL 452

Query: 429 GEGLQPDDITFV 440
            E  + D  +F+
Sbjct: 453 SEHYRIDSGSFI 464


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 246/623 (39%), Positives = 373/623 (59%), Gaps = 25/623 (4%)

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145
           +F+ + + + + WN++I G+  +      +  Y +M+  G   +  T   +L  CAK   
Sbjct: 69  LFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGT 128

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
           +S GK +H+  +K   E       +L++MY++ G+L+ A  VF K   R+ VS+T++I G
Sbjct: 129 LSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAG 188

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           Y   G+ D A  L  +M   +E    +   + ++L ACA  GSL+ G  V   I+ + + 
Sbjct: 189 YTRDGWSDGAIILLQQME--KEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMA 246

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
           SNL V NAL+DMY+KCG +  A  +F ++  +D+ISWN M+G                  
Sbjct: 247 SNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG------------------ 288

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
               ++P+  T   +LPACA L AL+ GK IH YI +N    ++  +  +L+D+Y KCG 
Sbjct: 289 ---ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYS-SDRHVANALVDLYVKCGV 344

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           +  A  +FD +  K L SW  MI+G  MHG  ++A++ F+ M   G++PD+++F+ +L A
Sbjct: 345 LGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYA 404

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           C+H+GLL+ G ++F  M  D+ I PKL+HY CMVDLL R G   +A   ++T+ + PDA 
Sbjct: 405 CSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDAT 464

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
           IW +LL  CR++  +EL E VA+ + ELEPEN G YVLL+N+YA A +W++V  +R ++ 
Sbjct: 465 IWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIG 524

Query: 566 DKGMKKVPGCSSIEVGSVVHEFLVGDK-VHPQSKHIYEMLDEIDALLEKSGFVPDTSEVL 624
            KG++K PGCS IE+   V+ F+ G+   HP SK I  +L ++   +++ G+ P T   L
Sbjct: 525 KKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYAL 584

Query: 625 YDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNRE 684
            + DE  KE AL  HSEKLA+A+GL++  P  TIR+ KNLRVCG+CH   K +SK   RE
Sbjct: 585 INADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRRE 644

Query: 685 IIARDRNRFHHFKDGNCSCNDYW 707
           I+ RD NRFHHFKDG CSC  +W
Sbjct: 645 IVLRDSNRFHHFKDGYCSCRGFW 667



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 133/471 (28%), Positives = 226/471 (47%), Gaps = 49/471 (10%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K VHS  IK+         + L+++   S  GDL  AL VFE + E N V W ++I G++
Sbjct: 133 KAVHSLAIKSSFERRINFSNTLLDM--YSKCGDLDGALRVFEKMGERNVVSWTSMIAGYT 190

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
                  AI    +M   G   +      IL +CA+  ++  GK +H ++    + S+ F
Sbjct: 191 RDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLF 250

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V  +L++MYA+ G +E A  VF+   ++D +S+  ++                       
Sbjct: 251 VCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG---------------------- 288

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
               P+  T+  +L ACA + +LE G  +   I  +G  S+ HV NAL+D+Y KCG L  
Sbjct: 289 -ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGL 347

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           AR LF+ I  +D++SW VMI GY       EA+  F +M  + IEP++V+F+S+L AC++
Sbjct: 348 ARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSH 407

Query: 347 LGALDLGKWIHAYIDKNHQKLN-NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-W 404
            G L+ G W   YI KN   +   +  +  ++D+ ++ GN+  A +  + +     A+ W
Sbjct: 408 SGLLEQG-WRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIW 466

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
            A++ G  ++   + A  +  R+    L+P++  +  +L     A +     ++      
Sbjct: 467 GALLCGCRIYHDIELAEKVAERVF--ELEPENTGYYVLL-----ANIYAEAEKWEEVKRM 519

Query: 465 DYKISPK--LQHYGC-MVDLLGRAGLF-----------DEAEALLKTMEMK 501
             KI  K   ++ GC  +++ GR  LF            + E+LLK M  K
Sbjct: 520 REKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRK 570



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/390 (30%), Positives = 190/390 (48%), Gaps = 41/390 (10%)

Query: 129 NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF 188
           N Y + F++   AKI    E   +   +++ G+E                   ESA  +F
Sbjct: 26  NVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK---------------RSESASELF 70

Query: 189 NKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS 248
           +K   RD +S+ ++I+GY S G  +    ++ +M         + +T+++VL  CA  G+
Sbjct: 71  DKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYL--GIDVDLATIISVLVGCAKSGT 128

Query: 249 LELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGG 308
           L LG  V SL         ++ +N L+DMYSKCGDL  A  +FE + +R+V+SW  MI G
Sbjct: 129 LSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAG 188

Query: 309 YTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN 368
           YT       A++L +QM +  ++ + V   S+L ACA  G+LD GK +H YI  N+   +
Sbjct: 189 YTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMA-S 247

Query: 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMI 428
           N+ +  +L+DMYAKCG+++ A  VF  M  K + SWN                     M+
Sbjct: 248 NLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNT--------------------MV 287

Query: 429 GEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488
           GE L+PD  T   +L AC     L+ G++    ++++   S        +VDL  + G+ 
Sbjct: 288 GE-LKPDSRTMACILPACASLSALERGKEIHGYILRN-GYSSDRHVANALVDLYVKCGVL 345

Query: 489 DEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
             A  L   +  K D   WT ++    +HG
Sbjct: 346 GLARLLFDMIPSK-DLVSWTVMIAGYGMHG 374



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 161/328 (49%), Gaps = 41/328 (12%)

Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK------------ 286
           ++S  A  G L+ G  V   +E      N+++ N ++  Y+K GD  +            
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEK----KNVYLWNFMVSEYAKIGDFKESICLFKIMVEKG 57

Query: 287 --------ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
                   A +LF+ +  RDVISWN MI GY      +  L +++QM+   I+ +  T +
Sbjct: 58  IEGKRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATII 117

Query: 339 SVLPACAYLGALDLGKWIHAY-IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG 397
           SVL  CA  G L LGK +H+  I  + ++  N S   +L+DMY+KCG++  A +VF+ MG
Sbjct: 118 SVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFS--NTLLDMYSKCGDLDGALRVFEKMG 175

Query: 398 YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
            + + SW +MI+G    G +D A+ L  +M  EG++ D +    +L AC  +G LD G+ 
Sbjct: 176 ERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKD 235

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-------------EMKPDA 504
             +  I+   ++  L     ++D+  + G  + A ++  TM             E+KPD+
Sbjct: 236 VHD-YIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDS 294

Query: 505 AIWTSLLGACRVHGRLELGESVAKHLLE 532
                +L AC     LE G+ +  ++L 
Sbjct: 295 RTMACILPACASLSALERGKEIHGYILR 322


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 281/770 (36%), Positives = 411/770 (53%), Gaps = 114/770 (14%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN------------ 94
           + VH+ +I +G     + L++LI++   S   DL  A  +F+ IR+P+            
Sbjct: 35  RTVHAHMIASGFKPRGYILNRLIDVYCKS--SDLVSAHHLFDEIRQPDIVARTTLIAAHS 92

Query: 95  ---------------------QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTF 133
                                 V +N +I G+S ++    AI+ +  ++ +GF P+ +TF
Sbjct: 93  SAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTF 152

Query: 134 PFILKSCAKI-SAISEGKQIHAHVLKLG-------------------------------- 160
             +L + A I     + +QIH  V+K G                                
Sbjct: 153 TSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAA 212

Query: 161 --------LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
                    E D    T++I  Y +NGEL++AR   +  + +  V++ A+I+GY   G+ 
Sbjct: 213 ARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFF 272

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI----EGHGLGSNL 268
            +A ++F +M +    +  +E T  +VLSACA+ G    G  V + I        L  +L
Sbjct: 273 LEALEMFRKMYLLGIQW--DEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSL 330

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA---------- 318
            V NAL  +Y KCG + +AR +F  +  +D++SWN ++ GY +     EA          
Sbjct: 331 SVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPER 390

Query: 319 ---------------------LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357
                                L LF +M     EP D  F   + ACA+L AL  G+ +H
Sbjct: 391 NLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLH 450

Query: 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA 417
           A + +     +++S   +LI MYAKCG ++AA  +F  M Y    SWNAMI+ L  HG  
Sbjct: 451 AQLVRLGFD-SSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHG 509

Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
            +AL LF  M+ E + PD ITF+ VLS C+HAGL++ G +YF +M   Y I P   HY  
Sbjct: 510 AQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYAR 569

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537
           M+DLL RAG F EA+ +++TM ++P   IW +LL  CR+HG ++LG   A+ L EL P++
Sbjct: 570 MIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQH 629

Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQS 597
            G YVLLSNMYA  GRWDDVA +R  + DKG+KK PGCS IEV + VH FLV D VHP+ 
Sbjct: 630 DGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDDIVHPEV 689

Query: 598 KHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTT 657
           + +Y  L+E+   + K G++PDT  VL+DM+ E KE  LS HSEKLA+ +GL+    G T
Sbjct: 690 QAVYNYLEELGLKMRKLGYIPDTKFVLHDMESEQKEYVLSTHSEKLAVGFGLLKLPLGAT 749

Query: 658 IRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +R+ KNLR+CG+CH+A K +SK+  REI+ RD  RFHHFK+G CSC +YW
Sbjct: 750 VRVFKNLRICGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGECSCGNYW 799



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 142/498 (28%), Positives = 213/498 (42%), Gaps = 91/498 (18%)

Query: 113 VAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLI 172
           +A   +  MI SGF P  Y    ++    K S +        H+     + D    T+LI
Sbjct: 33  IARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAH----HLFDEIRQPDIVARTTLI 88

Query: 173 NMYAQNGELESARLVFNKSSL--RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV 230
             ++  G    AR +F  + L  RD V Y A+ITGY+       A +LF ++      F 
Sbjct: 89  AAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDL--LRNGFR 146

Query: 231 PNESTVVTVLSACAHMGSLE--LGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG------ 282
           P+  T  +VL A A +   E       C++++  G G    V NAL+ ++ KC       
Sbjct: 147 PDNFTFTSVLGALALIVEDEKQCQQIHCAVVKS-GSGFVTSVLNALLSVFVKCASSPLVS 205

Query: 283 ---DLVKARDLFESIEKRD-------------------------------VISWNVMIGG 308
               +  AR LF+ + +RD                               V++WN MI G
Sbjct: 206 SSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISG 265

Query: 309 YTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN 368
           Y H   + EAL +FR+M    I+ ++ T+ SVL ACA  G    GK +HAYI +   + +
Sbjct: 266 YVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPS 325

Query: 369 ---NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA------------------- 406
              ++S+  +L  +Y KCG +  A QVF+ M  K L SWNA                   
Sbjct: 326 LDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFE 385

Query: 407 ------------MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
                       MISGLA +G  +++L LF+RM  EG +P D  F G + AC     L  
Sbjct: 386 EMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMH 445

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
           GRQ  +A +        L     ++ +  + G+ + A  L  TM    D+  W +++ A 
Sbjct: 446 GRQ-LHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYL-DSVSWNAMIAAL 503

Query: 515 RVHGR----LELGESVAK 528
             HG     LEL E + K
Sbjct: 504 GQHGHGAQALELFELMLK 521



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 137/282 (48%), Gaps = 9/282 (3%)

Query: 14  ILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICA 73
           IL   P     + L  N     L  KC  +   +QV +Q+    L +    LS  +    
Sbjct: 317 ILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNA-- 374

Query: 74  VSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTF 133
               G +  A   FE + E N + W  +I G + +     ++K + RM   GF P  Y F
Sbjct: 375 ----GRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAF 430

Query: 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL 193
              + +CA ++A+  G+Q+HA +++LG +S      +LI MYA+ G +E+A  +F     
Sbjct: 431 AGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPY 490

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
            D+VS+ A+I      G+   A +LF+ M   +E+ +P+  T +TVLS C+H G +E G+
Sbjct: 491 LDSVSWNAMIAALGQHGHGAQALELFELM--LKEDILPDRITFLTVLSTCSHAGLVEEGH 548

Query: 254 WVCSLIEG-HGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
                + G +G+         +ID+  + G   +A+D+ E++
Sbjct: 549 RYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETM 590


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 261/690 (37%), Positives = 394/690 (57%), Gaps = 25/690 (3%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           +L++ CT +Q +   +++H  +I TG        + L+++ A    G L  A  VFE + 
Sbjct: 35  SLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYA--KCGSLDDAKRVFEGME 92

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             +   W++II  ++ +    +A+  Y RMI  G  PN  TF   L  CA ++ +++G+ 
Sbjct: 93  IKDLFAWSSIIAAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRA 152

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IH  +L   +  D  +  SL+NMY +  E+  AR VF     R+  SYTA+I+ Y   G 
Sbjct: 153 IHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGE 212

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
             +A +LF  M  + E   PN  T  T+L A   +G+LE G  V   +   G  +N+ V 
Sbjct: 213 HAEALELFSRMS-KVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQ 271

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           NAL+ MY KCG  V+AR +F+S+  R+VISW  MI  Y    + +EAL LF++M   ++E
Sbjct: 272 NALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRM---DVE 328

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+ V+F S L ACA LGALD G+ IH  + + +  L +  + TSL+ MYA+CG++  A +
Sbjct: 329 PSGVSFSSALNACALLGALDEGREIHHRVVEAN--LASPQMETSLLSMYARCGSLDDARR 386

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VF+ M  +   S NAMI+    HG+  +AL ++ +M  EG+  D ITFV VL AC+H  L
Sbjct: 387 VFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRKMEQEGIPADGITFVSVLVACSHTSL 446

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           +   R +  +++ D+ + P ++HY CMVD+LGR+G   +AE L++TM  + DA  W +LL
Sbjct: 447 VADCRDFLQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQADAVAWMTLL 506

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
             C+ HG L+ GE  A+ + EL P     YV LSNMYA A R+DD   +R  + ++G+ +
Sbjct: 507 SGCKRHGDLDRGERAARKVFELAPAETLPYVFLSNMYAAAKRFDDARRVRKEMEERGVTR 566

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALL-------EKSGFVPDTSEVL 624
               S IE+ + +H F  G +   Q  H    ++ + +LL       +++G+VPDT EV 
Sbjct: 567 PVAVSYIEIDNELHMFTSGGRDEQQEGHDGRTMERVRSLLVELLEPMKQAGYVPDTREVY 626

Query: 625 YDMD----EEWKEGALSHHSEKLAIAYGLISTK---PGTTIRIVKNLRVCGNCHSATKLI 677
            +      EE K+ +L  HSE+LAIAYGLI+ K       +R+V + RVC  CHSA KL+
Sbjct: 627 LEQQGVTSEEEKQRSLCFHSERLAIAYGLIAAKDPDDSRPLRVVNSHRVCSGCHSAIKLL 686

Query: 678 SKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           S I  + I  RD +RFHHF+ G CSC D+W
Sbjct: 687 SDITEKRIFVRDGSRFHHFEKGACSCGDHW 716



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 126/410 (30%), Positives = 220/410 (53%), Gaps = 10/410 (2%)

Query: 111 PVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTS 170
           P+ A++ +  M   G V + +    ++ +C K+ A+ EG+++H H++  G  +D  + T+
Sbjct: 11  PLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETA 70

Query: 171 LINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV 230
           L+ MYA+ G L+ A+ VF    ++D  +++++I  YA  G  + A  L+  M    E   
Sbjct: 71  LLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYRRMIA--EGVE 128

Query: 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDL 290
           PN  T    L  CA +  L  G  +   I    +  +  + ++L++MY KC ++V+AR +
Sbjct: 129 PNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKV 188

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ-SNIEPNDVTFLSVLPACAYLGA 349
           FE ++ R+V S+  MI  Y    ++ EAL LF +M +   IEPN  TF ++L A   LG 
Sbjct: 189 FEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGN 248

Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
           L+ G+ +H ++        NV +  +L+ MY KCG+   A +VFD M  + + SW +MI+
Sbjct: 249 LEKGRKVHRHLASRGFD-TNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIA 307

Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS 469
             A HG   +AL+LF RM    ++P  ++F   L+AC   G LD GR+  + +++    S
Sbjct: 308 AYAQHGNPQEALNLFKRM---DVEPSGVSFSSALNACALLGALDEGREIHHRVVEANLAS 364

Query: 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
           P+++    ++ +  R G  D+A  +   M+ + DA    +++ A   HGR
Sbjct: 365 PQME--TSLLSMYARCGSLDDARRVFNRMKTR-DAFSCNAMIAAFTQHGR 411



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 113/397 (28%), Positives = 190/397 (47%), Gaps = 34/397 (8%)

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
           +I      G    A +L+ EM   E   V ++  V ++++AC  + +LE G  +   +  
Sbjct: 1   MIAACVREGRPLQALELWGEME--ERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLII 58

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALML 321
            G  +++ +  AL+ MY+KCG L  A+ +FE +E +D+ +W+ +I  Y      + A++L
Sbjct: 59  TGFRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVL 118

Query: 322 FRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381
           +R+M+   +EPN VTF   L  CA +  L  G+ IH  I  +    ++V L  SL++MY 
Sbjct: 119 YRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDV-LQDSLLNMYL 177

Query: 382 KCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG-EGLQPDDITFV 440
           KC  +  A +VF+GM  + + S+ AMIS     G+  +AL LFSRM   E ++P+  TF 
Sbjct: 178 KCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFA 237

Query: 441 GVLSACNHAGLLDIGRQYF----------NAMIQ--------------------DYKISP 470
            +L A    G L+ GR+            N ++Q                    D   + 
Sbjct: 238 TILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTAR 297

Query: 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHL 530
            +  +  M+    + G   EA  L K M+++P    ++S L AC + G L+ G  +   +
Sbjct: 298 NVISWTSMIAAYAQHGNPQEALNLFKRMDVEPSGVSFSSALNACALLGALDEGREIHHRV 357

Query: 531 LELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
           +E    +P     L +MYA  G  DD   +  R+  +
Sbjct: 358 VEANLASPQMETSLLSMYARCGSLDDARRVFNRMKTR 394


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 244/626 (38%), Positives = 374/626 (59%), Gaps = 35/626 (5%)

Query: 19  PSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFG 78
           P  + P  ++   P+L ++  C+ M+ +KQ+ +++  TG+    F +S++I  CA++  G
Sbjct: 146 PKWNSPTNVIITNPTLLIMESCSTMRQLKQIQARMTLTGIITHAFPVSRVIAFCALAHSG 205

Query: 79  DLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILK 138
           DL YA  +F  + +PN  +WN +IRG+  +  P+ A  F+V M       ++ +F F LK
Sbjct: 206 DLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALK 265

Query: 139 SCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVS 198
           +C +   + EG+ ++  V K+G + +  V   LI+ YA+ G L++AR VF++SS +D V+
Sbjct: 266 ACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVT 325

Query: 199 YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           +T +I GYA+    ++A ++F+ M +   +  PNE T++ V+SAC+ MG+LE+G  V   
Sbjct: 326 WTTMIDGYAAHDCSEEAMEVFELMLL--SHVEPNEVTLIAVVSACSDMGNLEMGKRVHEK 383

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY--- 315
           +E   +  +L + NAL+DMY KC  LV AR+LF+ +  +DV SW  M+ GY    D    
Sbjct: 384 VEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESA 443

Query: 316 ----------------------------KEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347
                                       KE+L LF +M++  + P + T +SVL AC  L
Sbjct: 444 RRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQL 503

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
             L+LG WIH Y         +V+L  +++DMYAKCG+I AA +VF  M  + L SWN M
Sbjct: 504 TCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTM 563

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           I+G A +G+A +A+++F +M   G +P++ITFV +L+AC+H GL+  GR+YF+ M + Y 
Sbjct: 564 IAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYG 623

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
           I P+  HY CMVDLLGR GL +EA  L+  M M+P  A W +LL ACR+HG +EL    A
Sbjct: 624 IKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELARLSA 683

Query: 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF 587
            +LL L+PE+ G YVLL+N  A   +W DV  +R+ + DKG+KK+PG S IE+     EF
Sbjct: 684 HNLLRLDPEDSGIYVLLANTCANDRKWSDVRRVRSLMKDKGVKKIPGYSLIEIDGGFVEF 743

Query: 588 LVGDKVHPQSKHIYEMLDEIDALLEK 613
           LV D+ HPQS+ IY++  E D L  K
Sbjct: 744 LVADESHPQSEEIYKL--ECDNLSSK 767


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 262/677 (38%), Positives = 386/677 (57%), Gaps = 12/677 (1%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNT--QFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           A+ ++C+ +   +  H+QIIKT L N    F  + L+ +   S     + A L+      
Sbjct: 16  AVSTQCSRLG--RAAHAQIIKT-LDNPLPSFIYNHLVNM--YSKLDRPNSAQLLLSLTPN 70

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V W  +I G   +     A+  +  M      PN +TFP   K+   + +   GKQ+
Sbjct: 71  RSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQV 130

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           HA  +K G  SD FV  S  +MY++ G  E AR +F++   R+  ++ A ++     G  
Sbjct: 131 HALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRY 190

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           DDA   F E   R E + PN  T    L+ACA    L LG  +   +   G  +++ V N
Sbjct: 191 DDALTAFIEF--RHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVAN 248

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            LID Y KC  +  +  +F  I K + +SW  MI  Y    + ++A ++F +  +  IEP
Sbjct: 249 GLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEP 308

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
            D    SVL ACA L  L++GK +H    K    + N+ + ++L+DMY KCG+I+ AE+ 
Sbjct: 309 TDFMVSSVLSACAGLSVLEVGKSVHTLAVK-ACVVGNIFVGSALVDMYGKCGSIEDAERA 367

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMI--GEGLQPDDITFVGVLSACNHAG 450
           FD M  + L +WNAMI G A  G+AD A++LF  M      + P+ +TFV VLSAC+ AG
Sbjct: 368 FDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAG 427

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
            +++G + F +M   Y I P  +HY C+VDLLGRAG+ ++A   +K M ++P  ++W +L
Sbjct: 428 SVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGAL 487

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           LGA ++ G+ ELG+  A +L EL+P + G +VLLSNM+A AGRW++   +R  + D G+K
Sbjct: 488 LGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIK 547

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           K  GCS I  G+ VH F   D  H ++  I  ML ++   +E +G++PDTS  L+D++EE
Sbjct: 548 KGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEE 607

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            K   + +HSEK+A+A+GLIS   G  IRI KNLR+CG+CHSA K IS I  REII RD 
Sbjct: 608 EKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGREIIVRDN 667

Query: 691 NRFHHFKDGNCSCNDYW 707
           N FH F+D  CSC DYW
Sbjct: 668 NLFHRFRDNQCSCRDYW 684


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 257/612 (41%), Positives = 369/612 (60%), Gaps = 47/612 (7%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           +L  CA     SE   +HA  ++ G++ D  V   L   YA +G L+ A  +  ++    
Sbjct: 36  LLAGCASARRASE---LHAAAVRAGVDQDKAVDFRLQRAYAASGRLDLAVALLRRTPDPT 92

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN-- 253
           AV YT+ I  ++SRG    A  L  EM +     +P   T+   L AC   G L +G   
Sbjct: 93  AVFYTSAIHAHSSRGLHHAALALLSEM-LLSHGLLPTAHTLSASLPAC---GGLAVGRAL 148

Query: 254 -------------WVCSLIEG---------------HGLGSNLHVTN--ALIDMYSKCGD 283
                        +V + + G                G+  + HV +  A++  Y+K G 
Sbjct: 149 HGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAMLTCYAKMGL 208

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           L  AR LF+ +  +D+I WN M+ GYT      EAL LFR+ML+S +EP++V+ +  L A
Sbjct: 209 LDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSA 268

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLN--NVSLWTSLIDMYAKCGNIKAAEQVFD--GMGYK 399
            A LG  + G+W+H+++  +  +    N  + T+LIDMY KCG+++ A  VF   G G +
Sbjct: 269 VAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDR 328

Query: 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF 459
            + +WNAM++G AMHG + +AL+ F ++  +GL P DITF+GVL+AC+H+GL+D GR+ F
Sbjct: 329 DIVAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELF 388

Query: 460 NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPDAAIWTSLLGACRVHG 518
            +M ++Y I PK++HYGCMVDLLGRAG  +EA  L+++M   KPDA +W SLL ACR+H 
Sbjct: 389 RSMAEEYGIEPKVEHYGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLHK 448

Query: 519 RLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSI 578
            +ELG+ +A HL+     N G YVLLSNMYA AG W +V  +R  +   G++K PGCS++
Sbjct: 449 NMELGQRIADHLVANGLANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEPGCSAV 508

Query: 579 EVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTS---EVLYDMDEEWKEGA 635
           EVG  V EF+ GD+ HP++  IY  L+E++ +    G VP T      L D D   KE A
Sbjct: 509 EVGRRVVEFVAGDRSHPRAAEIYAKLEEVNGMARARGHVPRTELVLHDLDDDDTAAKEQA 568

Query: 636 LSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHH 695
           L+ HSEKLA+A+GLIST PGT I+IVKNLR C +CH+  KL+S++  R+I+ RDRNRFHH
Sbjct: 569 LAVHSEKLALAFGLISTPPGTAIKIVKNLRACADCHAVLKLVSEVTGRKIVFRDRNRFHH 628

Query: 696 FKDGNCSCNDYW 707
           F DG+C+C DYW
Sbjct: 629 FVDGSCTCGDYW 640



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/452 (27%), Positives = 211/452 (46%), Gaps = 43/452 (9%)

Query: 19  PSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFG 78
           PS    + +L    + ALL+ C + +   ++H+  ++ G+   +    +L    A S   
Sbjct: 19  PSGGVQHGVLTADRAAALLAGCASARRASELHAAAVRAGVDQDKAVDFRLQRAYAASGRL 78

Query: 79  DLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILS-GFVPNTYTFPFIL 137
           DL+ ALL      +P  V + + I  HS       A+     M+LS G +P  +T    L
Sbjct: 79  DLAVALL--RRTPDPTAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSASL 136

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-DA 196
            +C  ++    G+ +H + +KL L  +P+V T+L+ MYA+ G+  +AR++F+        
Sbjct: 137 PACGGLAV---GRALHGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDPHV 193

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIRE-----------------------------E 227
           VS TA++T YA  G LDDAR LFD +P ++                              
Sbjct: 194 VSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRS 253

Query: 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLI---EGHGLGSNLHVTNALIDMYSKCGDL 284
              P+E +VV  LSA A +G+ E G W+ S +       +  N  V  ALIDMY KCG L
Sbjct: 254 GVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSL 313

Query: 285 VKARDLFESIEK--RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
             A  +F  +    RD+++WN M+ GY      +EAL  F Q+    + P D+TF+ VL 
Sbjct: 314 EDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTDITFIGVLN 373

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT-- 400
           AC++ G +D G+ +   + + +     V  +  ++D+  + G ++ A ++   M      
Sbjct: 374 ACSHSGLVDEGRELFRSMAEEYGIEPKVEHYGCMVDLLGRAGRVEEAFELVQSMTRTKPD 433

Query: 401 LASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
              W ++++   +H   +    +   ++  GL
Sbjct: 434 AVMWASLLAACRLHKNMELGQRIADHLVANGL 465


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 241/608 (39%), Positives = 373/608 (61%), Gaps = 41/608 (6%)

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE----LESARLVFNK 190
           F L++C+ ++ +   K IHA++++  +  D F  + LI            ++ A  +F++
Sbjct: 22  FSLETCSDLTHL---KIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQ 78

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250
               +   + A+I G++     D A   +  +  + +  +P+  T   ++ +C  +  + 
Sbjct: 79  IQNPNLFIFNAMIRGHSGSKNPDQAFHFY--VQSQRQGLLPDNLTFPFLVKSCTKLHCIS 136

Query: 251 LGNWVCSLIEGHGLGSNLHVTNALIDMYS------------------------------- 279
           +G+     I  HG   +++V N+L+ MY+                               
Sbjct: 137 MGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFN 196

Query: 280 KCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS 339
           KCGD+  AR LF+ + ++++++W+ MI GY   + + +A+ LF+ +    +  N+   +S
Sbjct: 197 KCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVS 256

Query: 340 VLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK 399
           V+ +CA+LGAL+LG+  H Y+ KN   LN + L T+L+DMYA+CG+I  A  VF+ +  +
Sbjct: 257 VISSCAHLGALELGERAHDYVVKNGMTLNLI-LGTALVDMYARCGSIDKAVWVFEDLPER 315

Query: 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF 459
              SW A+I+GLAMHG ++++L  F+ M+  GL P DITF  VLSAC+H GL++ G Q F
Sbjct: 316 DTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIF 375

Query: 460 NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
            +M +D+++ P+L+HYGCMVDLLGRAG  +EAE  +  M +KP+A +W +LLGACR+H  
Sbjct: 376 ESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKN 435

Query: 520 LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIE 579
            E+GE V K L++L P++ G YVLLSN+YA A  W+ V  +R  +  KG+KK PG S IE
Sbjct: 436 AEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIE 495

Query: 580 VGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHH 639
           +   VH+F +GD  HP+   I  M +EI   +  +G+  +T++ L+D+DEE KE AL  H
Sbjct: 496 LDGRVHKFTIGDSSHPEMDKIERMWEEILMRIRAAGYRGNTADALFDIDEEEKESALHRH 555

Query: 640 SEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDG 699
           SEKLAIA+G++ ++ GT IRIVKNLRVC +CH+ATKLISK+F RE+I RDRNRFHHF+ G
Sbjct: 556 SEKLAIAFGMMRSEAGTPIRIVKNLRVCEDCHTATKLISKVFGRELIVRDRNRFHHFRQG 615

Query: 700 NCSCNDYW 707
            CSC DYW
Sbjct: 616 LCSCMDYW 623



 Score =  260 bits (665), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 143/429 (33%), Positives = 235/429 (54%), Gaps = 37/429 (8%)

Query: 25  YKLLQ-NQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGD--LS 81
           +K L+   P L  L  C+++ ++K +H+ +I+T +    FA S+LI  C     G   + 
Sbjct: 11  FKTLRLKNPKLFSLETCSDLTHLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLID 70

Query: 82  YALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCA 141
           YA  +F  I+ PN  I+N +IRGHS S +P  A  FYV+    G +P+  TFPF++KSC 
Sbjct: 71  YASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCT 130

Query: 142 KISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTA 201
           K+  IS G Q H H++K G E D +V  SL++MYA  G+ E+A L+F +    D VS+T+
Sbjct: 131 KLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTS 190

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFV------------------------------- 230
           +I G+   G ++ AR+LFD+MP  E+N V                               
Sbjct: 191 MIRGFNKCGDVESARKLFDQMP--EKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVR 248

Query: 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDL 290
            NE+ +V+V+S+CAH+G+LELG      +  +G+  NL +  AL+DMY++CG + KA  +
Sbjct: 249 ANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWV 308

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350
           FE + +RD +SW  +I G       + +L  F  M+++ + P D+TF +VL AC++ G +
Sbjct: 309 FEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLV 368

Query: 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMIS 409
           + G  I   + ++H+    +  +  ++D+  + G ++ AE+    M  K  A  W A++ 
Sbjct: 369 ERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLG 428

Query: 410 GLAMHGKAD 418
              +H  A+
Sbjct: 429 ACRIHKNAE 437


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 247/630 (39%), Positives = 380/630 (60%), Gaps = 19/630 (3%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G +  A  VF+ +   N + WN ++  +  S      ++   R+  S       +   ++
Sbjct: 140 GHVDEARDVFDRMPHKNSISWNGLLAAYVRSGR----LEEARRLFESKSDWELISCNCLM 195

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
               K + + + +Q+   +    L S      ++I+ YAQ+G+L  AR +F +S +RD  
Sbjct: 196 GGYVKRNMLGDARQLFDQIPVRDLIS----WNTMISGYAQDGDLSQARRLFEESPVRDVF 251

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           ++TA++  Y   G LD+AR++FDEMP + E       +   +++  A    +++G  +  
Sbjct: 252 TWTAMVYAYVQDGMLDEARRVFDEMPQKRE------MSYNVMIAGYAQYKRMDMGRELFE 305

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
            +    +GS     N +I  Y + GDL +AR+LF+ + +RD +SW  +I GY     Y+E
Sbjct: 306 EMPFPNIGS----WNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEE 361

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           A+ +  +M +     N  TF   L ACA + AL+LGK +H  + +   +     +  +L+
Sbjct: 362 AMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYE-KGCLVGNALV 420

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI 437
            MY KCG I  A  VF G+ +K + SWN M++G A HG   +AL++F  MI  G++PD+I
Sbjct: 421 GMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEI 480

Query: 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT 497
           T VGVLSAC+H GL D G +YF++M +DY I+P  +HY CM+DLLGRAG  +EA+ L++ 
Sbjct: 481 TMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRN 540

Query: 498 MEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557
           M  +PDAA W +LLGA R+HG +ELGE  A+ + ++EP N G YVLLSN+YA +GRW DV
Sbjct: 541 MPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDV 600

Query: 558 ATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFV 617
           + +R ++   G++K PG S +EV + +H F VGD  HP+   IY  L+E+D  ++  G+V
Sbjct: 601 SKMRLKMRQIGVQKTPGYSWVEVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYV 660

Query: 618 PDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLI 677
             T  VL+D++EE K+  L +HSEKLA+A+G+++   G  IR++KNLRVC +CH+A K I
Sbjct: 661 SSTKLVLHDVEEEEKKHMLKYHSEKLAVAFGILTMPSGKPIRVMKNLRVCEDCHNAIKHI 720

Query: 678 SKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           SKI  R II RD +R+HHF +G CSC DYW
Sbjct: 721 SKIVGRLIIVRDSHRYHHFSEGICSCRDYW 750



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 124/501 (24%), Positives = 211/501 (42%), Gaps = 84/501 (16%)

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
           D F    ++  YA+N  L  AR++F+    +D VS+ A+++GY   G++D+AR +FD MP
Sbjct: 94  DLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMP 153

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
            +      N  +   +L+A    G LE       L E       L   N L+  Y K   
Sbjct: 154 HK------NSISWNGLLAAYVRSGRLEEAR---RLFESKS-DWELISCNCLMGGYVKRNM 203

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF--------------------- 322
           L  AR LF+ I  RD+ISWN MI GY    D  +A  LF                     
Sbjct: 204 LGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQD 263

Query: 323 ------RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
                 R++     +  ++++  ++   A    +D+G+ +            N+  W  +
Sbjct: 264 GMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELF-----EEMPFPNIGSWNIM 318

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           I  Y + G++  A  +FD M  +   SW A+I+G A +G  ++A+++   M  +G   + 
Sbjct: 319 ISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNR 378

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD--LLG---RAGLFDEA 491
            TF   LSAC     L++G+Q    +++           GC+V   L+G   + G  DEA
Sbjct: 379 STFCCALSACADIAALELGKQVHGQVVR------TGYEKGCLVGNALVGMYCKCGCIDEA 432

Query: 492 EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE--LEPENPGAYVLLSNMYA 549
             + + ++ K D   W ++L     HG      +V + ++   ++P+      +LS    
Sbjct: 433 YDVFQGVQHK-DIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLS---- 487

Query: 550 GAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDA 609
                   A   T L D+G +              H       + P SKH   M+D    
Sbjct: 488 --------ACSHTGLTDRGTE------------YFHSMNKDYGITPNSKHYACMID---- 523

Query: 610 LLEKSGFVPDTSEVLYDMDEE 630
           LL ++G + +   ++ +M  E
Sbjct: 524 LLGRAGCLEEAQNLIRNMPFE 544



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 105/431 (24%), Positives = 186/431 (43%), Gaps = 67/431 (15%)

Query: 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
           T  I+ + +NG  + A  VF+   LR++VSY A+I+GY        AR LFD+MP +   
Sbjct: 37  TKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHK--- 93

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288
                                +L +W                 N ++  Y++   L  AR
Sbjct: 94  ---------------------DLFSW-----------------NLMLTGYARNRRLRDAR 115

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
            LF+S+ ++DV+SWN M+ GY  +    EA  +F +M       N +++  +L A    G
Sbjct: 116 MLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHK----NSISWNGLLAAYVRSG 171

Query: 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI 408
            L+  + +  +  K+  +L + +    L+  Y K   +  A Q+FD +  + L SWN MI
Sbjct: 172 RLEEARRL--FESKSDWELISCN---CLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMI 226

Query: 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
           SG A  G   +A  LF     E    D  T+  ++ A    G+LD  R+ F+ M Q  ++
Sbjct: 227 SGYAQDGDLSQARRLFE----ESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREM 282

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
           S     Y  M+    +    D    L + M   P+   W  ++     +G L    + A+
Sbjct: 283 S-----YNVMIAGYAQYKRMDMGRELFEEMPF-PNIGSWNIMISGYCQNGDL----AQAR 332

Query: 529 HLLELEPENPG-AYVLLSNMYAGAGRWDDVATIRTRLNDKG--MKKVPGCSSIEVGSVVH 585
           +L ++ P+    ++  +   YA  G +++   +   +   G  + +   C ++   + + 
Sbjct: 333 NLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIA 392

Query: 586 EFLVGDKVHPQ 596
              +G +VH Q
Sbjct: 393 ALELGKQVHGQ 403



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 95/210 (45%), Gaps = 11/210 (5%)

Query: 37  LSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           LS C ++  +   KQVH Q+++TG        + L+ +      G +  A  VF+ ++  
Sbjct: 385 LSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGM--YCKCGCIDEAYDVFQGVQHK 442

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ-I 152
           + V WN ++ G++       A+  +  MI +G  P+  T   +L +C+       G +  
Sbjct: 443 DIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYF 502

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESAR-LVFNKSSLRDAVSYTALITGYASRGY 211
           H+     G+  +   +  +I++  + G LE A+ L+ N     DA ++ AL+      G 
Sbjct: 503 HSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGN 562

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLS 241
           ++   Q   EM  + E   P+ S +  +LS
Sbjct: 563 MELGEQA-AEMVFKME---PHNSGMYVLLS 588


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 249/587 (42%), Positives = 373/587 (63%), Gaps = 2/587 (0%)

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           M  SG  PN +TF  IL + A    +  G+Q+H+ + K G +++ FV T+L++MYA+  +
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD 60

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
           + SA  VF++   R+ VS+ ++I G+      D A  +F ++ +RE+  +PNE +V +VL
Sbjct: 61  MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDV-LREKTVIPNEVSVSSVL 119

Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVI 300
           SACA+MG L  G  V  ++   GL    +V N+L+DMY KC    +   LF+ +  RDV+
Sbjct: 120 SACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVV 179

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           +WNV++ G+     ++EA   F  M +  I P++ +F +VL + A L AL  G  IH  I
Sbjct: 180 TWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQI 239

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
            K    + N+ +  SLI MYAKCG++  A QVF+G+    + SW AMIS   +HG A++ 
Sbjct: 240 IK-LGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQV 298

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
           + LF  M+ EG++P  +TFV VLSAC+H G ++ G  +FN+M + + ++P  +HY CMVD
Sbjct: 299 IELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVD 358

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540
           LLGRAG  DEA+  +++M MKP  ++W +LLGACR +G L++G   A+ L E+EP NPG 
Sbjct: 359 LLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGN 418

Query: 541 YVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHI 600
           YVLL+NM   +GR ++   +R  +   G++K PGCS I+V ++   F   D+ H  S  I
Sbjct: 419 YVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEI 478

Query: 601 YEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRI 660
           Y+ML++++ L++K G+V +T  V   ++E  +E  L +HSEKLA+A+GL++    + IRI
Sbjct: 479 YKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLPIDSPIRI 538

Query: 661 VKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            KNLR CG+CH+  KL SKIF+REII RD NRFH F DG CSC DYW
Sbjct: 539 KKNLRTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 585



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 118/412 (28%), Positives = 198/412 (48%), Gaps = 13/412 (3%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRG-- 104
           +Q+HS I K G     F  + L+++ A     D+  A+ VF+ + E N V WN++I G  
Sbjct: 30  QQLHSLIHKHGFDANIFVGTALVDMYAKC--ADMHSAVRVFDQMPERNLVSWNSMIVGFF 87

Query: 105 -HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLES 163
            ++L    V   K  +R      +PN  +   +L +CA +  ++ G+Q+H  V+K GL  
Sbjct: 88  HNNLYDRAVGVFKDVLRE--KTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVP 145

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
             +V  SL++MY +    +    +F     RD V++  L+ G+      ++A   F  M 
Sbjct: 146 LTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVM- 204

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
            R E  +P+E++  TVL + A + +L  G  +   I   G   N+ +  +LI MY+KCG 
Sbjct: 205 -RREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGS 263

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           LV A  +FE IE  +VISW  MI  Y       + + LF  ML   IEP+ VTF+ VL A
Sbjct: 264 LVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSA 323

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLA 402
           C++ G ++ G      + K H        +  ++D+  + G +  A++  + M  K T +
Sbjct: 324 CSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPS 383

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIG-EGLQPDDITFVGVLSACNHAGLLD 453
            W A++     +G          R+   E   P +  +V + + C  +G L+
Sbjct: 384 VWGALLGACRKYGNLKMGREAAERLFEMEPYNPGN--YVLLANMCTRSGRLE 433



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 143/288 (49%), Gaps = 10/288 (3%)

Query: 27  LLQNQPSLA-LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSY 82
           ++ N+ S++ +LS C NM  +   +QVH  ++K GL    + ++ L+++     F D   
Sbjct: 108 VIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGV 167

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
            L  F+ + + + V WN ++ G   +     A  ++  M   G +P+  +F  +L S A 
Sbjct: 168 KL--FQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSAS 225

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
           ++A+ +G  IH  ++KLG   +  +  SLI MYA+ G L  A  VF      + +S+TA+
Sbjct: 226 LAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAM 285

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEG 261
           I+ Y   G  +   +LF+ M    E   P+  T V VLSAC+H G +E G     S+ + 
Sbjct: 286 ISAYQLHGCANQVIELFEHM--LSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKI 343

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVIS-WNVMIGG 308
           H +         ++D+  + G L +A+   ES+  +   S W  ++G 
Sbjct: 344 HDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGA 391


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 250/574 (43%), Positives = 359/574 (62%), Gaps = 12/574 (2%)

Query: 142 KISAISEGKQIHAHVLKLGLESDPFVHT-SLINMY-----AQNGELESARLVFNKSSLRD 195
           +I+++S+  Q+HA +LK     DP   T +L  ++     +  G+L  A L+ N  S ++
Sbjct: 2   EITSLSQAMQLHAQILK---SPDPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQN 58

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
           +  +  +I  Y+       A  LF  M  +  +  P++ T   +L +CA +    +G  +
Sbjct: 59  SFFHNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQL 118

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
             LI   GL S+ +V+N LI MYS CG   +A  +F  +  RDV+SW  MI G+      
Sbjct: 119 HGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRA 178

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
            EA+ LF +M++  +EPN+ T +SVL ACA  GA+ +G+ +   I++    L   ++ T+
Sbjct: 179 LEAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLE-ANVRTA 237

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           LIDMYAKCG+I +A +VFDG+  K + +W AMISGLA HG  ++A++LF +M   GL+PD
Sbjct: 238 LIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPD 297

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
           + T   VLSAC +AG    G  YFN+M   Y I P +QHYGCMVDLL R G  DEAE  +
Sbjct: 298 ERTMTAVLSACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFI 357

Query: 496 KTMEMKPDAAIWTSLLGACRVHGRLELGESVAKH--LLELEPENPGAYVLLSNMYAGAGR 553
           + M ++PD  +W +L+ A +VHG ++  E + K   LL+++ ++ G+YVLL N+YA AG+
Sbjct: 358 RKMPIEPDVVLWRTLIWASKVHGDIDRSEQLMKDRGLLKMDSDDCGSYVLLGNVYASAGK 417

Query: 554 WDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEK 613
           W D A +R  +N KG+ K PGCS IEV  +VHEF  GD  H +++ IY  LDE++  L+ 
Sbjct: 418 WHDKAKMRELMNQKGLSKPPGCSRIEVDGLVHEFAAGDSGHIEAEKIYAKLDEVEERLKA 477

Query: 614 SGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSA 673
            G+ P  SEVL ++D + K   L HHSEKLA+A+GLI T PGT IRIVKNLR C +CHS 
Sbjct: 478 EGYHPKLSEVLLEIDNKEKAFQLRHHSEKLAVAFGLIKTSPGTEIRIVKNLRSCEDCHSV 537

Query: 674 TKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            KLISKI+ ++II RDR RFHHF +G+CSC DYW
Sbjct: 538 LKLISKIYQQDIIVRDRIRFHHFINGDCSCKDYW 571



 Score =  226 bits (577), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 134/391 (34%), Positives = 211/391 (53%), Gaps = 12/391 (3%)

Query: 41  TNMQNIKQVHSQIIKTGLHNTQFA-LSKLIEICAVSPFGDLSYALLVFETIREPNQVIWN 99
           T++    Q+H+QI+K+     Q   L+ L    A+SP GDL+YA L+  ++   N    N
Sbjct: 4   TSLSQAMQLHAQILKSPDPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQNSFFHN 63

Query: 100 NIIRGHSLSSSPVVAIKFYVRMIL--SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
            +IR +S +  P  A+  ++ M+   +   P+ +T+PF+LKSCA++     GKQ+H  + 
Sbjct: 64  TMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLHGLIY 123

Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ 217
           K GLESD +V   LI+MY+  G+   A  VF K   RD VS+T++I G+       +A +
Sbjct: 124 KSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEAIR 183

Query: 218 LFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDM 277
           LF+EM   E+   PNE+TVV+VL ACA  G++ +G  V  +IE   +G   +V  ALIDM
Sbjct: 184 LFEEMV--EDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTALIDM 241

Query: 278 YSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTF 337
           Y+KCG +  AR +F+ I  +DV +W  MI G  +    +EA+ LF QM    + P++ T 
Sbjct: 242 YAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPDERTM 301

Query: 338 LSVLPACAYLGALDLGKWIHAYIDKNHQKLN---NVSLWTSLIDMYAKCGNIKAAEQVFD 394
            +VL AC   G    G    AY +    K      +  +  ++D+ A+ G++  AE+   
Sbjct: 302 TAVLSACRNAGWFSEG---FAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIR 358

Query: 395 GMGYK-TLASWNAMISGLAMHGKADKALSLF 424
            M  +  +  W  +I    +HG  D++  L 
Sbjct: 359 KMPIEPDVVLWRTLIWASKVHGDIDRSEQLM 389



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 179/368 (48%), Gaps = 40/368 (10%)

Query: 4   PPSSLTLSPSILHFPPSSDP-----PYKLLQNQPSLALLSKCTNMQNI---KQVHSQIIK 55
           P  +L L  S+L  P S  P     P+          LL  C  ++     KQ+H  I K
Sbjct: 75  PTQALHLFLSMLCQPTSPRPDKFTYPF----------LLKSCARLKQPRVGKQLHGLIYK 124

Query: 56  TGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAI 115
           +GL + ++  + LI +   S  G    A  VF  +R+ + V W ++I G       + AI
Sbjct: 125 SGLESDRYVSNGLIHM--YSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEAI 182

Query: 116 KFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHV--LKLGLESDPFVHTSLIN 173
           + +  M+  G  PN  T   +L++CA   A+  G+++   +   K+GLE++  V T+LI+
Sbjct: 183 RLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEAN--VRTALID 240

Query: 174 MYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENF--VP 231
           MYA+ G + SAR VF+    +D  ++TA+I+G A+ G  ++A  LFD+M    E+F   P
Sbjct: 241 MYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQM----ESFGLRP 296

Query: 232 NESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDL 290
           +E T+  VLSAC + G    G  +  S+   +G+   +     ++D+ ++ G L +A + 
Sbjct: 297 DERTMTAVLSACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEF 356

Query: 291 FESIE-KRDVISWNVMI-GGYTHTS-DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347
              +  + DV+ W  +I     H   D  E LM  R +L+ +   +D     VL    Y 
Sbjct: 357 IRKMPIEPDVVLWRTLIWASKVHGDIDRSEQLMKDRGLLKMD---SDDCGSYVLLGNVYA 413

Query: 348 GALDLGKW 355
            A   GKW
Sbjct: 414 SA---GKW 418


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 249/574 (43%), Positives = 359/574 (62%), Gaps = 5/574 (0%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           IL  C    AI EG+++H H++K       ++ T LI +Y +   L  AR +F++   R+
Sbjct: 68  ILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRN 127

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
            VS+TA+I+ Y+ RG+  +A  LF EM +R +   PN  T  T+L++C      E G  +
Sbjct: 128 VVSWTAMISAYSQRGFAFEALNLFVEM-LRSDT-EPNHFTFATILTSCYGSLGFETGRQI 185

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
            S+       S++ V ++L+DMY+K G +  A  +F  + +RDV++   +I GY      
Sbjct: 186 HSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLD 245

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
           +EAL LFRQ+    +  N VT+ SVL A + L AL+ GK +H+++ ++ Q  + V L  S
Sbjct: 246 EEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQ-YSYVVLLNS 304

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG-LQP 434
           LIDMY+KCGN+  A ++FD M  +T  SWNAM+ G + HG A + L LF  M  E  ++P
Sbjct: 305 LIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKP 364

Query: 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK-ISPKLQHYGCMVDLLGRAGLFDEAEA 493
           D IT++ VLS C+H  L D+G + F  M+     I P + HYGC+VDLLGRAG  +EA  
Sbjct: 365 DSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFD 424

Query: 494 LLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGR 553
            +K M   P AAIW SLLG+CRVH  +E+G  V + LLELEPEN G YV+LSN+YA AG+
Sbjct: 425 FIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGK 484

Query: 554 WDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEK 613
           W+D+  IR  + +K + K PG S +E+  +VH F   D  HP+ + +   + E+    ++
Sbjct: 485 WEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVANKVKELSIKFKE 544

Query: 614 SGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSA 673
            G+VPD S VLYD+DEE KE  L  HSEKLA+A+GLI+T  GTTIR++KNLR+C +CHS 
Sbjct: 545 DGYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSF 604

Query: 674 TKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            K +S+++ R +I RD+NRFH+   G CSC DYW
Sbjct: 605 AKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 638



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 124/417 (29%), Positives = 222/417 (53%), Gaps = 14/417 (3%)

Query: 35  ALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEIC-AVSPFGDLSYALLVFETI 90
           ++L++C + + I++   VH+ +IKT    + +  ++LI +       GD   A  +F+ +
Sbjct: 67  SILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGD---ARGMFDEM 123

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            + N V W  +I  +S       A+  +V M+ S   PN +TF  IL SC        G+
Sbjct: 124 PQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGR 183

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           QIH+  +K   ES  FV +SL++MYA++G +  A  VF+    RD V+ TA+I+GYA  G
Sbjct: 184 QIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMG 243

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
             ++A +LF ++ I  E    N  T  +VL+A + + +L  G  V S +   G  S + +
Sbjct: 244 LDEEALKLFRQLQI--EGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVL 301

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN- 329
            N+LIDMYSKCG++  AR +F+S+ +R  ISWN M+ GY+     +E L LF+ M + N 
Sbjct: 302 LNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENK 361

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN-NVSLWTSLIDMYAKCGNIKA 388
           ++P+ +T+L+VL  C++    D+G  I   +      +  ++  +  ++D+  + G ++ 
Sbjct: 362 VKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEE 421

Query: 389 AEQVFDGMGY-KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
           A      M +  T A W +++    +H   +  + +  +++   L+P++     +LS
Sbjct: 422 AFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLL--ELEPENAGNYVILS 476



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 78/154 (50%), Gaps = 5/154 (3%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L  LS    + + KQVHS ++++G ++    L+ LI++   S  G++ YA  +F+++ E 
Sbjct: 271 LTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDM--YSKCGNVCYARRIFDSMPER 328

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQI 152
             + WN ++ G+S        ++ +  M     V P++ T+  +L  C+       G +I
Sbjct: 329 TCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEI 388

Query: 153 HAHVL--KLGLESDPFVHTSLINMYAQNGELESA 184
             +++  K G+E D   +  ++++  + G +E A
Sbjct: 389 FYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEA 422


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 255/635 (40%), Positives = 378/635 (59%), Gaps = 16/635 (2%)

Query: 85  LVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVP------------NTYT 132
           + F +IR+  +      I   SL+  PV    F  +   +  +P            N Y 
Sbjct: 1   MSFSSIRKTQETSRILSILSFSLNLFPVSPYYFLHQSFATQLIPQHKVDSFPSSPSNHYY 60

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           +  +L+SC    A+  GKQ+HA + +LG+  +  + T L+N Y+    L +A  +F+K  
Sbjct: 61  YASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKIP 120

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
             +   +  LI  YA  G  + A  L+ +M   E    P+  T+  VL AC+ + ++  G
Sbjct: 121 KGNLFLWNVLIRAYAWNGPHETAISLYHQM--LEYGLKPDNFTLPFVLKACSALSTIGEG 178

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
             +   +   G   ++ V  AL+DMY+KCG +V AR +F+ I  RD + WN M+  Y   
Sbjct: 179 RVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQN 238

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
               E+L L  +M    + P + T ++V+ + A +  L  G+ IH +  ++  + N+  +
Sbjct: 239 GHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYND-KV 297

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
            T+LIDMYAKCG++K A  +F+ +  K + SWNA+I+G AMHG A +AL LF RM+ E  
Sbjct: 298 KTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMKEA- 356

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
           QPD ITFVG L+AC+   LLD GR  +N M++D +I+P ++HY CMVDLLG  G  DEA 
Sbjct: 357 QPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAY 416

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552
            L++ M++ PD+ +W +LL +C+ HG +EL E   + L+ELEP++ G YV+L+NMYA +G
Sbjct: 417 DLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGNYVILANMYAQSG 476

Query: 553 RWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE 612
           +W+ VA +R  + DKG+KK   CS IEV + V+ FL GD  HP S  IY  L  ++ L+ 
Sbjct: 477 KWEGVARLRQLMIDKGIKKNIACSWIEVKNKVYAFLSGDVSHPNSGAIYAELKRLEGLMR 536

Query: 613 KSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHS 672
           ++G+VPDT  V +D++E+ K   +  HSE+LAIA+GLIST PGT + I KNLR+C +CH 
Sbjct: 537 EAGYVPDTGSVFHDVEEDEKTDMVCSHSERLAIAFGLISTLPGTRLLITKNLRICEDCHV 596

Query: 673 ATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           A K ISKI  REI  RD NR+HHF+ G CSC DYW
Sbjct: 597 AIKFISKITEREITVRDVNRYHHFRHGLCSCGDYW 631



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 130/406 (32%), Positives = 218/406 (53%), Gaps = 11/406 (2%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           +LL  C + + +   KQ+H+++ + G+       +KL+   +V     L  A  +F+ I 
Sbjct: 63  SLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVC--NSLRNAHHLFDKIP 120

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           + N  +WN +IR ++ +     AI  Y +M+  G  P+ +T PF+LK+C+ +S I EG+ 
Sbjct: 121 KGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRV 180

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IH  V++ G E D FV  +L++MYA+ G +  AR VF+K   RDAV + +++  YA  G+
Sbjct: 181 IHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGH 240

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
            D++  L  EM  +     P E+T+VTV+S+ A +  L  G  +      HG   N  V 
Sbjct: 241 PDESLSLCCEMAAK--GVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVK 298

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
            ALIDMY+KCG +  A  LFE + ++ V+SWN +I GY       EAL LF +M++   +
Sbjct: 299 TALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMK-EAQ 357

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+ +TF+  L AC+    LD G+ ++  + ++ +    V  +T ++D+   CG +  A  
Sbjct: 358 PDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYD 417

Query: 392 VFDGMGYKTLAS-WNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           +   M     +  W A+++    HG  + A     ++I   L+PDD
Sbjct: 418 LIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLI--ELEPDD 461


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 240/571 (42%), Positives = 359/571 (62%), Gaps = 9/571 (1%)

Query: 37  LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYAL-LVFETIREPNQ 95
           + +C  ++++KQ+H+ +I +GL + +F LSK+ E       G + YA   + +T      
Sbjct: 12  IHRCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFG-KHIGFVDYAFDFLNQTDLHVGT 70

Query: 96  VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAH 155
           + +N +I  ++ S +P  A   Y R++ +GFVP+ YTFP +LK+C K   + EG+Q+H  
Sbjct: 71  LPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGV 130

Query: 156 VLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDA 215
            +K+G   D +V  SL++ Y+  G+   A  VF++  +RD VS+T LI+GY   G  D+A
Sbjct: 131 AVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEA 190

Query: 216 RQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALI 275
             LF +M +     VPN +T V+VL AC  MG L +G  V  L+     G  L V NAL+
Sbjct: 191 INLFLKMDV-----VPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALV 245

Query: 276 DMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV 335
           DMY KC  L +AR LF+ +  RD++SW  +I G       K++L LF  M  S +EP+ +
Sbjct: 246 DMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRI 305

Query: 336 TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
              SVL ACA LGALD G+W+  YI++   + + + + T+L+DMYAKCG I+ A  +F+G
Sbjct: 306 ILTSVLSACASLGALDYGRWVQEYIERQGIEWD-IHIGTALVDMYAKCGCIEMALHIFNG 364

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
           +  + + +WNA++ GLAMHG   +AL  F  MIG G++P+++TF+ +L+AC H+GL+  G
Sbjct: 365 IPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEG 424

Query: 456 RQYFNAMI-QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
           R YF  MI Q +  SP+L+HYGCM+DLL RAGL DEA   ++ M + PD  IW +LL AC
Sbjct: 425 RSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSAC 484

Query: 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPG 574
           + +G +EL + +  HLLEL+ ++ G YVLLSN+YA   RWDDV  +R  + DKG++K PG
Sbjct: 485 KANGNVELSQEILSHLLELKSQDSGVYVLLSNIYATNERWDDVTRVRRLMKDKGIRKFPG 544

Query: 575 CSSIEVGSVVHEFLVGDKVHPQSKHIYEMLD 605
            S IEV    HEFLVGD  H +++ I+ +L+
Sbjct: 545 SSVIEVDGEAHEFLVGDTNHSRNEDIHILLN 575



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 125/397 (31%), Positives = 193/397 (48%), Gaps = 13/397 (3%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN-GELESARLVFNKSSLR 194
           +L S  +   I   KQIHAH++  GL  D FV + +   + ++ G ++ A    N++ L 
Sbjct: 8   LLNSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFLNQTDLH 67

Query: 195 -DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
              + Y  LI  YAS      A  ++    I    FVP+  T   VL AC     ++ G 
Sbjct: 68  VGTLPYNTLIAAYASSCTPKAAFLVYGR--IVGNGFVPDMYTFPVVLKACTKFLGVQEGE 125

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTS 313
            V  +    G   +L+V N+L+  YS CG    A  +F+ +  RDV+SW  +I GY  T 
Sbjct: 126 QVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTG 185

Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
            + EA+ LF +M   ++ PN  TF+SVL AC  +G L +GK +H  + K    +  V + 
Sbjct: 186 LFDEAINLFLKM---DVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLV-VG 241

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
            +L+DMY KC  +  A ++FD +  + + SW ++ISGL    +   +L LF  M   G++
Sbjct: 242 NALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVE 301

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
           PD I    VLSAC   G LD GR +    I+   I   +     +VD+  + G  + A  
Sbjct: 302 PDRIILTSVLSACASLGALDYGR-WVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALH 360

Query: 494 LLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHL 530
           +   +  + +   W +LLG   +HG    G    KH 
Sbjct: 361 IFNGIPNR-NIFTWNALLGGLAMHGH---GHEALKHF 393


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 254/598 (42%), Positives = 364/598 (60%), Gaps = 45/598 (7%)

Query: 128 PNTYT-----FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN---G 179
           PNT T      P ++    K + + E KQI A+ +K   +++  V T  IN    N    
Sbjct: 16  PNTETTSLLPLPHLISLIPKCTTLKELKQIQAYTIKTNYQNNTNVITKFINFCTSNPTKA 75

Query: 180 ELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTV 239
            +E A  +F++ +  + V +  +  GYA    L+D        P+R          ++T 
Sbjct: 76  SMEHAHQLFDQITQPNIVLFNTMARGYAR---LND--------PLR----------MITH 114

Query: 240 LSACAHMGSLELGNWVCSLIEGH---------GLGSNLHVTNALIDMYSKCGDLVKARDL 290
              C     L L + V +L EG          G+  N++V   LI+MY+ CGD+  +R +
Sbjct: 115 FRRC-----LRLVSKVKALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRV 169

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350
           F+ I++  V+++N +I      +   EAL LFR++ +  ++P DVT L VL +CA LG+L
Sbjct: 170 FDKIDEPCVVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSL 229

Query: 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISG 410
           DLG+W+H Y+ K +     V + T+LIDMYAKCG++  A  VF  M  +   +W+A+I  
Sbjct: 230 DLGRWMHEYV-KKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVA 288

Query: 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470
            A HG   +A+S+ + M  E +QPD+ITF+G+L AC+H GL++ G +YF+ M  +Y I P
Sbjct: 289 YATHGDGFQAISMLNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVP 348

Query: 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHL 530
            ++HYGCMVDLLGRAG  DEA   +  + +KP   +W +LL AC  HG +E+G+ V + +
Sbjct: 349 SIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERI 408

Query: 531 LELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVG 590
            EL+  + G YV+ SN+ A  G+WDDV  +R  + DKG  K+PGCSSIEV +VVHEF  G
Sbjct: 409 FELDDSHGGDYVIFSNLCARYGKWDDVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAG 468

Query: 591 DKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLY-DMDEEWKEGALSHHSEKLAIAYGL 649
           + VH  S  ++  LDE+   L+ +G+VPDTS V Y DM++E KE  L +HSEKLAI +GL
Sbjct: 469 EGVHSTSTTLHRALDELVKELKSAGYVPDTSLVFYADMEDEEKEIILRYHSEKLAITFGL 528

Query: 650 ISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           ++T PGTTIR+VKNLRVCG+CH+A K IS IF R+II RD  RFHHFKDG CSC DYW
Sbjct: 529 LNTPPGTTIRVVKNLRVCGDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 586



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 216/398 (54%), Gaps = 21/398 (5%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF-GDLSYALLVFETIRE 92
           ++L+ KCT ++ +KQ+ +  IKT   N    ++K I  C  +P    + +A  +F+ I +
Sbjct: 30  ISLIPKCTTLKELKQIQAYTIKTNYQNNTNVITKFINFCTSNPTKASMEHAHQLFDQITQ 89

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
           PN V++N + RG++  + P+  I  + R                L+  +K+ A++EGKQ+
Sbjct: 90  PNIVLFNTMARGYARLNDPLRMITHFRR---------------CLRLVSKVKALAEGKQL 134

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H   +KLG+  + +V  +LINMY   G+++++R VF+K      V+Y A+I   A     
Sbjct: 135 HCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLARNNRA 194

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           ++A  LF E+  +E    P + T++ VLS+CA +GSL+LG W+   ++ +G    + V  
Sbjct: 195 NEALALFREL--QEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVNT 252

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            LIDMY+KCG L  A ++F  + KRD  +W+ +I  Y    D  +A+ +  +M +  ++P
Sbjct: 253 TLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQP 312

Query: 333 NDVTFLSVLPACAYLGALDLG-KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           +++TFL +L AC++ G ++ G ++ H   ++ +  + ++  +  ++D+  + G +  A +
Sbjct: 313 DEITFLGILYACSHNGLVEEGFEYFHGMTNE-YGIVPSIKHYGCMVDLLGRAGRLDEAYK 371

Query: 392 VFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMI 428
             D +  K T   W  ++S  + HG  +    +  R+ 
Sbjct: 372 FIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIF 409



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 143/290 (49%), Gaps = 6/290 (2%)

Query: 21  SDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDL 80
           +DP   +   +  L L+SK   +   KQ+H   +K G+ +  + +  LI +   +  GD+
Sbjct: 106 NDPLRMITHFRRCLRLVSKVKALAEGKQLHCFAVKLGVSDNMYVVPTLINM--YTACGDI 163

Query: 81  SYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSC 140
             +  VF+ I EP  V +N II   + ++    A+  +  +   G  P   T   +L SC
Sbjct: 164 DASRRVFDKIDEPCVVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSC 223

Query: 141 AKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYT 200
           A + ++  G+ +H +V K G +    V+T+LI+MYA+ G L+ A  VF     RD  +++
Sbjct: 224 ALLGSLDLGRWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWS 283

Query: 201 ALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLI 259
           A+I  YA+ G    A  + +EM  ++E   P+E T + +L AC+H G +E G  +   + 
Sbjct: 284 AIIVAYATHGDGFQAISMLNEM--KKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMT 341

Query: 260 EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGG 308
             +G+  ++     ++D+  + G L +A    + +  K   I W  ++  
Sbjct: 342 NEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSA 391


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 254/695 (36%), Positives = 407/695 (58%), Gaps = 20/695 (2%)

Query: 15  LHFPPSSDPPYKLLQNQPSL--ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEIC 72
           +HFP         L +Q  L   L S  T +  + ++H+ ++   + ++Q  LS L    
Sbjct: 1   MHFPA-------FLADQRRLRRVLSSSRTTLATLTRLHALLV---VSSSQHILSSLAAAY 50

Query: 73  AVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYT 132
           A +   D + + L        +   WN ++  HS + +P  A++ + R + S   PN+ T
Sbjct: 51  ARAGALDAAESTLAASPSSPSSIAAWNGLLSAHSRAGAPGAALRVF-RALPSSARPNSTT 109

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           F   L +CA++  +   + +       G   D FV ++L+++Y++ G +E A  VF+   
Sbjct: 110 FTLTLTACARLGDLDAAESVRVRAFAAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMP 169

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
            +D V+++ ++ G+ + G   +A  ++  M  RE     +E  +V V+ AC   G+  +G
Sbjct: 170 RKDRVAWSTMVAGFVTAGRPVEALAMYSRM--REHGVSDDEVVMVGVIQACMSTGNARIG 227

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
             V   +  H +  ++  T +L+ MY+K G L  A  +F  +  R+ ++W+ +I G+   
Sbjct: 228 ASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALISGFAQN 287

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
               EAL LFR++    ++P     +S L ACA +G L LGK IH +I +  +      L
Sbjct: 288 GRAVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFILRRLEW--QCIL 345

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
            T+++DMY+KCG++++A ++F+ +  + L  WNA+I+    HG    AL+LF  +   G+
Sbjct: 346 GTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALALFQELNETGI 405

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
           +PD  TF  +LSA +H+GL++ G+ +F+ MI+++ I P  +HY C+VDLL R+GL +EA 
Sbjct: 406 KPDHATFASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLVEEAN 465

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552
            +L +M+ +P  AIW  LL  C  + +LELGE++AK +LEL PE+ G   L+SN+YA A 
Sbjct: 466 DMLASMQTEPTIAIWVILLSGCLNNKKLELGETIAKKILELRPEDIGVLALVSNLYAAAK 525

Query: 553 RWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE 612
           +WD V  IR  + D G KKVPG S IEV    H F++ D+ HPQ + I +M+ ++++ + 
Sbjct: 526 KWDKVREIRKLMKDSGSKKVPGYSLIEVKGTRHAFVMEDQSHPQHREILKMVAKLNSEMR 585

Query: 613 KSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHS 672
           K G+VP T  V +D+DE   +  LS+HSE+LAIA+GL++T PGT + I+KNLRVCG+CH 
Sbjct: 586 KLGYVPRTEFVYHDLDE---DQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHD 642

Query: 673 ATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           A K ISKI +REI+ RD  RFHHFKDG CSC DYW
Sbjct: 643 AIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 677


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 265/677 (39%), Positives = 397/677 (58%), Gaps = 10/677 (1%)

Query: 35   ALLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
            +LLS C ++  +    Q+HS  IK G+         L+++   S   D+  A   F T  
Sbjct: 367  SLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDL--YSKCADVETAHKFFLTTE 424

Query: 92   EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
              N V+WN ++  +    +   + + + +M + G +PN +T+P IL++C  + A+  G+Q
Sbjct: 425  TENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQ 484

Query: 152  IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
            IH HV+K G + + +V + LI+MYA+ G+L  A  +  +    D VS+TA+I GY     
Sbjct: 485  IHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDM 544

Query: 212  LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
              +A QLF+EM  R   F  +     + +SACA + +L  G  + +     G G++L + 
Sbjct: 545  FSEALQLFEEMEYRGIQF--DNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSIN 602

Query: 272  NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
            NALI +Y++CG + +A   FE I  ++ ISWN ++ G   +  ++EAL +F +ML++  E
Sbjct: 603  NALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAE 662

Query: 332  PNDVTFLSVLPACAYLGALDLGKWIHAYIDKN-HQKLNNVSLWTSLIDMYAKCGNIKAAE 390
             N  T+ S + A A L  +  G+ IH+ + K  +     VS   SLI +YAK G+I  A 
Sbjct: 663  VNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVS--NSLISLYAKSGSISDAW 720

Query: 391  QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
            + F+ M  + + SWNAMI+G + HG   +AL LF  M   G+ P+ +TFVGVLSAC+H G
Sbjct: 721  REFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIG 780

Query: 451  LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
            L+  G  YF +M + + + PK +HY C+VDLLGRAG  D A   +K M +  DA IW +L
Sbjct: 781  LVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTL 840

Query: 511  LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
            L AC +H  +E+GE  A HLLELEPE+   YVL+SN+YA + +W      R  + D+G+K
Sbjct: 841  LSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDRGVK 900

Query: 571  KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
            K PG S IEV + VH F  GDK+HP +  IYE +  ++    + G+V D+  +L + ++ 
Sbjct: 901  KEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLLNESEQG 960

Query: 631  WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
             K+     HSEKLAIA+GL+S      IR++KNLRVC +CH+  K +SKI NR II RD 
Sbjct: 961  QKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSIIVRDA 1020

Query: 691  NRFHHFKDGNCSCNDYW 707
            +RFHHF  G CSC D+W
Sbjct: 1021 HRFHHFDGGVCSCKDFW 1037



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 155/491 (31%), Positives = 244/491 (49%), Gaps = 7/491 (1%)

Query: 46  IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           +KQVHS+    G  ++    + LI++   S  G +  A  VF  I   + V W  +I G 
Sbjct: 179 VKQVHSRTFYYGFDSSPLVANLLIDL--YSKNGYIESAKKVFNCICMKDIVTWVAMISGL 236

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
           S +     AI  +  M  S   P  Y    +L +  KI     G+Q+H  V+K G  S+ 
Sbjct: 237 SQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSET 296

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           +V   L+ +Y+++ +L SA  +F+  + RD VSY +LI+G   +G+ D A +LF +M  +
Sbjct: 297 YVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKM--Q 354

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
            +   P+  TV ++LSACA +G+L  G  + S     G+ +++ +  +L+D+YSKC D+ 
Sbjct: 355 RDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVE 414

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
            A   F + E  +++ WNVM+  Y    +  ++  +FRQM    + PN  T+ S+L  C 
Sbjct: 415 TAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCT 474

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
            LGAL LG+ IH ++ K   +L NV + + LIDMYAK G +  A ++   +    + SW 
Sbjct: 475 SLGALYLGEQIHTHVIKTGFQL-NVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWT 533

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
           AMI+G   H    +AL LF  M   G+Q D+I F   +SAC     L  G+Q  +A    
Sbjct: 534 AMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQ-IHAQSYA 592

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
                 L     ++ L  R G   EA    + +  K + + W SL+      G  E    
Sbjct: 593 AGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNIS-WNSLVSGLAQSGYFEEALQ 651

Query: 526 VAKHLLELEPE 536
           V   +L  E E
Sbjct: 652 VFVRMLRTEAE 662



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 140/493 (28%), Positives = 237/493 (48%), Gaps = 15/493 (3%)

Query: 31  QPSLALLSKCT---NMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVF 87
           Q  L LL  C    ++    ++H +I K+G       +  L++       GD   A+ VF
Sbjct: 59  QNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVD--NYFRHGDQHGAVKVF 116

Query: 88  ETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS-AI 146
           +     +   WN +I       S       + RM+  G  PN YTF  +LK+C     A 
Sbjct: 117 DENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAF 176

Query: 147 SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGY 206
           +  KQ+H+     G +S P V   LI++Y++NG +ESA+ VFN   ++D V++ A+I+G 
Sbjct: 177 NYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGL 236

Query: 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS 266
           +  G  ++A  LF +M   E    P    + +VLSA   +   ELG  +  L+   G  S
Sbjct: 237 SQNGLEEEAILLFCDMHASE--IFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHS 294

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML 326
             +V N L+ +YS+   L+ A  +F ++  RD +S+N +I G         AL LF +M 
Sbjct: 295 ETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQ 354

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
           +  ++P+ +T  S+L ACA +GAL  G  +H++  K      ++ L  SL+D+Y+KC ++
Sbjct: 355 RDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSA-DIILEGSLLDLYSKCADV 413

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
           + A + F     + +  WN M+           +  +F +M  EG+ P+  T+  +L  C
Sbjct: 414 ETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTC 473

Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGC--MVDLLGRAGLFDEAEALLKTMEMKPDA 504
              G L +G Q    +I   K   +L  Y C  ++D+  + G    A  +L+ +  + D 
Sbjct: 474 TSLGALYLGEQIHTHVI---KTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP-EDDV 529

Query: 505 AIWTSLLGACRVH 517
             WT+++     H
Sbjct: 530 VSWTAMIAGYVQH 542



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 130/479 (27%), Positives = 215/479 (44%), Gaps = 46/479 (9%)

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
           G   N   + ++L+ C    ++ E  ++H  + K G + +P +  SL++ Y ++G+   A
Sbjct: 53  GVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGA 112

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
             VF+++S R   S+  +I  + ++        LF  M    E   PN  T   VL AC 
Sbjct: 113 VKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRML--AEGITPNGYTFAGVLKACV 170

Query: 245 HMGSLELG--NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
             G +       V S    +G  S+  V N LID+YSK G +  A+ +F  I  +D+++W
Sbjct: 171 G-GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTW 229

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
             MI G +     +EA++LF  M  S I P      SVL A   +   +LG+ +H  + K
Sbjct: 230 VAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIK 289

Query: 363 --NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
              H +     +   L+ +Y++   + +AE++F  M  +   S+N++ISGL   G +D+A
Sbjct: 290 WGFHSE---TYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRA 346

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
           L LF++M  + L+PD IT   +LSAC   G L  G Q  +  I+   +S  +   G ++D
Sbjct: 347 LELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKA-GMSADIILEGSLLD 405

Query: 481 LLGRAGLFDEAEALLKTME----------------------------------MKPDAAI 506
           L  +    + A     T E                                  M P+   
Sbjct: 406 LYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFT 465

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPE-NPGAYVLLSNMYAGAGRWDDVATIRTRL 564
           + S+L  C   G L LGE +  H+++   + N     +L +MYA  G+      I  RL
Sbjct: 466 YPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRL 524



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 142/348 (40%), Gaps = 45/348 (12%)

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
           + E     N    + +L  C   GSL     +   I   G      + ++L+D Y + GD
Sbjct: 49  MEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGD 108

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
              A  +F+    R V SWN MI  +       +   LFR+ML   I PN  TF  VL A
Sbjct: 109 QHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKA 168

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS------LIDMYAKCGNIKAAEQVFDGMG 397
           C        G     Y+ + H +       +S      LID+Y+K G I++A++VF+ + 
Sbjct: 169 CVG------GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCIC 222

Query: 398 YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
            K + +W AMISGL+ +G  ++A+ LF  M    + P       VLSA     L ++G Q
Sbjct: 223 MKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQ 282

Query: 458 YF---------------NAMIQDYKISPKL---------------QHYGCMVDLLGRAGL 487
                            N ++  Y  S KL                 Y  ++  L + G 
Sbjct: 283 LHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGF 342

Query: 488 FDEAEALLKTME---MKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
            D A  L   M+   +KPD     SLL AC   G L  G  +  H ++
Sbjct: 343 SDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIK 390



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 20/209 (9%)

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
           + L   M +  +  N   +L +L  C   G+L     +H  I K+      + L  SL+D
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPL-LIDSLVD 101

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
            Y + G+   A +VFD    +++ SWN MI          +   LF RM+ EG+ P+  T
Sbjct: 102 NYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYT 161

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG---------CMVDLLGRAGLFD 489
           F GVL AC      DI   Y        ++  +  +YG          ++DL  + G  +
Sbjct: 162 FAGVLKACVGG---DIAFNYVK------QVHSRTFYYGFDSSPLVANLLIDLYSKNGYIE 212

Query: 490 EAEALLKTMEMKPDAAIWTSLLGACRVHG 518
            A+ +   + MK D   W +++     +G
Sbjct: 213 SAKKVFNCICMK-DIVTWVAMISGLSQNG 240


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 233/588 (39%), Positives = 368/588 (62%), Gaps = 5/588 (0%)

Query: 121 MILSG-FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNG 179
           ++L+G   P    +  I+ +CA+   ++  + IH+H+ +  L  D F+  SLI+MY + G
Sbjct: 52  LLLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCG 111

Query: 180 ELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTV 239
            +  AR VF+    RD VS+T LITGYA      +A  L  +M      F P+  T  + 
Sbjct: 112 AVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDM--LRARFRPSGFTFTSF 169

Query: 240 LSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV 299
           L A    G   +G  + +L   + L  +++V +AL+DMY++C  +  A  +F+ ++ ++ 
Sbjct: 170 LKAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNE 229

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
           +SWN +I G+    D +  LM F +M ++       T+ SV  A A +GAL+ G+W+HA+
Sbjct: 230 VSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAH 289

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADK 419
           + K+ QKL    +  +++ MYAK G++  A +VFD +  + L +WN M++  A +G   +
Sbjct: 290 MIKSGQKLTAF-VANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKE 348

Query: 420 ALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479
           A++ F  +   G+Q + ITF+ VL+AC+H GL+  G+QYF+ M++DY + P++ HY   V
Sbjct: 349 AVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFD-MMKDYNVEPEIDHYVSFV 407

Query: 480 DLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG 539
           DLLGRAGL  EA   +  M M+P AA+W +LLGACR+H   ++G+  A H+ EL+PE+ G
Sbjct: 408 DLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPEDTG 467

Query: 540 AYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKH 599
             VLL N+YA  G+WDD A +R  +   G+KK P CS +E+ + VH F+  D  HP+S+ 
Sbjct: 468 PPVLLYNIYASTGQWDDAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHPKSEE 527

Query: 600 IYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIR 659
           IY M +E++  ++K+G+VP+T  VL  + E+ +E  L +HSEK+A+A+ LI+   G TIR
Sbjct: 528 IYRMWEEVNTRIKKAGYVPNTDYVLLHIKEQERETKLQYHSEKIALAFALINMPAGATIR 587

Query: 660 IVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           I+KN+R+CG+CHSA + +S++F REI+ RD NRFHHF +G+CSC DYW
Sbjct: 588 IMKNIRICGDCHSAFRYVSEVFKREIVVRDTNRFHHFSNGSCSCGDYW 635



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 117/390 (30%), Positives = 202/390 (51%), Gaps = 15/390 (3%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEI-CAVSPFGDLSYALLVFETI 90
           ++++ C   +N+   + +HS + ++ L    F L+ LI + C     G +S A  VF+ I
Sbjct: 67  SIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKC---GAVSDARHVFDGI 123

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
              + V W  +I G++ +  P  A+     M+ + F P+ +TF   LK+         G+
Sbjct: 124 PTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGE 183

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           Q+HA  +K  L+ D +V ++L++MYA+  +++ A  VF+    ++ VS+ ALI G+A +G
Sbjct: 184 QMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKG 243

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
             +     F EM  +   F     T  +V SA A +G+LE G WV + +   G      V
Sbjct: 244 DGETTLMKFAEM--QRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFV 301

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            N ++ MY+K G +V AR +F+ +++RD+++WN M+  +      KEA+  F ++ +  I
Sbjct: 302 ANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGI 361

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYID--KNHQKLNNVSLWTSLIDMYAKCGNIKA 388
           + N +TFLSVL AC++ G +  GK    Y D  K++     +  + S +D+  + G +K 
Sbjct: 362 QLNQITFLSVLTACSHGGLVKEGK---QYFDMMKDYNVEPEIDHYVSFVDLLGRAGLLKE 418

Query: 389 AEQ-VFDGMGYKTLASWNAMISGLAMHGKA 417
           A   VF      T A W A++    MH  A
Sbjct: 419 ALIFVFKMPMEPTAAVWGALLGACRMHKNA 448


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 261/632 (41%), Positives = 384/632 (60%), Gaps = 22/632 (3%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G LS A  VF+T+ + N V W +++RG+  +     A + +  M     V  T     +L
Sbjct: 100 GMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLL 159

Query: 138 KSCAKISAISEGKQIHAHVL-KLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           +         EG+   A  L  +  E D    T++I  Y + G L+ AR +F++   R+ 
Sbjct: 160 Q---------EGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNV 210

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           V++TA+++GYA  G +D AR+LF+ MP R      NE +   +L    H G +   +   
Sbjct: 211 VTWTAMVSGYARNGKVDVARKLFEVMPER------NEVSWTAMLLGYTHSGRMREAS--- 261

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
           SL +   +   + V N +I  +   G++ KAR +F+ +++RD  +W+ MI  Y       
Sbjct: 262 SLFDAMPVKPVV-VCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYEL 320

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           EAL LFR+M +  +  N  + +SVL  C  L +LD GK +HA + ++     ++ + + L
Sbjct: 321 EALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFD-QDLYVASVL 379

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           I MY KCGN+  A+QVF+    K +  WN+MI+G + HG  ++AL++F  M   G+ PDD
Sbjct: 380 ITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDD 439

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
           +TF+GVLSAC+++G +  G + F  M   Y++ P ++HY C+VDLLGRA   +EA  L++
Sbjct: 440 VTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVE 499

Query: 497 TMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
            M M+PDA +W +LLGACR H +L+L E   + L +LEP+N G YVLLSNMYA  GRW D
Sbjct: 500 KMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRD 559

Query: 557 VATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGD-KVHPQSKHIYEMLDEIDALLEKSG 615
           V  +R ++  + + K+PGCS IEV   VH F  GD K HP+   I +ML+++  LL ++G
Sbjct: 560 VEVLREKIKARSVTKLPGCSWIEVEKKVHMFTGGDSKGHPEQPIIMKMLEKLGGLLREAG 619

Query: 616 FVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATK 675
           + PD S VL+D+DEE K  +L +HSEKLA+AYGL+    G  IR++KNLRVCG+CHSA K
Sbjct: 620 YCPDGSFVLHDVDEEEKTHSLGYHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIK 679

Query: 676 LISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           LI+K+  REII RD NRFHHFKDG+CSC DYW
Sbjct: 680 LIAKVTGREIILRDANRFHHFKDGHCSCKDYW 711



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 162/381 (42%), Gaps = 43/381 (11%)

Query: 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE-- 226
            +++  Y +  +   A L+F K   R+ VS+  LI+G+   G L +AR++FD MP R   
Sbjct: 59  NAMVAAYFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVV 118

Query: 227 ------ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA--LIDM- 277
                   +V N   V        HM    + +W   L    GL     V +A  L DM 
Sbjct: 119 SWTSMVRGYVRN-GDVAEAERLFWHMPHKNVVSWTVML---GGLLQEGRVDDARKLFDMM 174

Query: 278 --------------YSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFR 323
                         Y + G L +AR LF+ + KR+V++W  M+ GY        A  LF 
Sbjct: 175 PEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFE 234

Query: 324 QMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383
            M     E N+V++ ++L     LG    G+   A    +   +  V +   +I  +   
Sbjct: 235 VM----PERNEVSWTAML-----LGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLN 285

Query: 384 GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
           G +  A +VF GM  +   +W+AMI      G   +AL LF RM  EGL  +  + + VL
Sbjct: 286 GEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVL 345

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
           S C     LD G+Q    +++  +    L     ++ +  + G    A+ +     +K D
Sbjct: 346 SVCVSLASLDHGKQVHAQLVRS-EFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLK-D 403

Query: 504 AAIWTSLLGACRVHGRLELGE 524
             +W S++     HG   LGE
Sbjct: 404 VVMWNSMITGYSQHG---LGE 421



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 154/344 (44%), Gaps = 66/344 (19%)

Query: 172 INMYAQNGELESARLVFNKSSL--RDAVSYTALITGYASRGYLDDARQLFDEMPIREENF 229
           I  YA+NG+L+ AR VF+++ L  R   S+ A++  Y       +A  LF++MP R    
Sbjct: 29  IACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQR---- 84

Query: 230 VPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARD 289
               +TV                +W                 N LI  + K G L +AR 
Sbjct: 85  ----NTV----------------SW-----------------NGLISGHIKNGMLSEARR 107

Query: 290 LFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA 349
           +F+++  R+V+SW  M+ GY    D  EA  LF  M   N+    V++  +L      G 
Sbjct: 108 VFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNV----VSWTVMLGGLLQEGR 163

Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
           +D  + +   + +      +V   T++I  Y + G +  A  +FD M  + + +W AM+S
Sbjct: 164 VDDARKLFDMMPE-----KDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVS 218

Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS 469
           G A +GK D A  LF  M     + +++++  +L    H+G +      F+AM     + 
Sbjct: 219 GYARNGKVDVARKLFEVMP----ERNEVSWTAMLLGYTHSGRMREASSLFDAM----PVK 270

Query: 470 PKLQHYGC--MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           P +    C  M+   G  G  D+A  + K M+ + D   W++++
Sbjct: 271 PVVV---CNEMIMGFGLNGEVDKARRVFKGMKER-DNGTWSAMI 310



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 95/196 (48%), Gaps = 10/196 (5%)

Query: 27  LLQNQPSL-ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSY 82
           L  N PSL ++LS C ++ ++   KQVH+Q++++      +  S LI +      G+L  
Sbjct: 334 LALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYV--KCGNLVR 391

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           A  VF      + V+WN++I G+S       A+  +  M  SG  P+  TF  +L +C+ 
Sbjct: 392 AKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSY 451

Query: 143 ISAISEGKQIHAHVLKLGLESDPFV--HTSLINMYAQNGELESARLVFNKSSLR-DAVSY 199
              + EG ++    +K   + +P +  +  L+++  +  ++  A  +  K  +  DA+ +
Sbjct: 452 SGKVKEGLELF-ETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVW 510

Query: 200 TALITGYASRGYLDDA 215
            AL+    +   LD A
Sbjct: 511 GALLGACRTHMKLDLA 526


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 221/437 (50%), Positives = 297/437 (67%), Gaps = 2/437 (0%)

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N LI  Y++ G L  AR LF+ +  R+ +SW+ M+ GY    D +EAL +F +M   ++ 
Sbjct: 147 NTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVR 206

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+D   + VL ACA  GAL+ GKW+H Y+ K H    N+   T+L+DMY+KCG ++ A  
Sbjct: 207 PDDTVLVGVLAACAQHGALEQGKWVHGYL-KAHGIKINLFFGTALVDMYSKCGEVQLAMD 265

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VF+ M YK + +W  MI GLAMHG+  +A+ LF++M   G++PDDI F+GVL AC HAGL
Sbjct: 266 VFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGL 325

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           +D GR+ F++M++ Y I PK++HYGCMVDLL R G   EA+ +++ M M+PDA IW +L+
Sbjct: 326 VDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALM 385

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
             CR H  +E  E VAKH + LEP+  GAYVLLSN+YA +GR      IR  + +KG+ K
Sbjct: 386 AGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHLMREKGVDK 445

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE-KSGFVPDTSEVLYDMDEE 630
            PGCS++EV  V+H+F+VGD  HP+ K I     EID  +  + G++PD  EVL D++EE
Sbjct: 446 TPGCSTVEVNGVIHQFIVGDLSHPRIKDILSKWYEIDTRIRLEEGYIPDMKEVLLDIEEE 505

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KEGALS HSEKLAIA+ LIS      IRI KNLRVC +CH  TKLISK++ REI+ RDR
Sbjct: 506 EKEGALSRHSEKLAIAFALISISDNMPIRIFKNLRVCHDCHHVTKLISKVYGREIVVRDR 565

Query: 691 NRFHHFKDGNCSCNDYW 707
            RFH FK+G CSC DYW
Sbjct: 566 TRFHLFKEGTCSCKDYW 582



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 114/357 (31%), Positives = 183/357 (51%), Gaps = 35/357 (9%)

Query: 99  NNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK----QIHA 154
           + +IR  S S+ P +A+  Y  ++ +G +P  +T P +LKS A   A+         +H 
Sbjct: 41  DALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMALSPAVPGAAVLALTVHT 100

Query: 155 HVLKLGLESDPFVHTSLINMYAQN-GELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
           H +KLGL+    V  +LI ++A   G L    L+   ++  DA ++  LIT YA  G L 
Sbjct: 101 HAVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTLITAYARAGRLA 160

Query: 214 DARQLFDEMPIRE-----------------------------ENFVPNESTVVTVLSACA 244
           DAR LFDEMP R                              E+  P+++ +V VL+ACA
Sbjct: 161 DARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACA 220

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
             G+LE G WV   ++ HG+  NL    AL+DMYSKCG++  A D+FE ++ ++V++W  
Sbjct: 221 QHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTT 280

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           MI G        EA+MLF QM  S I P+D+ F+ VL AC + G +D G+ +   + + +
Sbjct: 281 MIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKY 340

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA-SWNAMISGLAMHGKADKA 420
                +  +  ++D+ A+ G +  A+++   M  +  A  W A+++G   H   + A
Sbjct: 341 GIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFHKNVEFA 397



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 125/240 (52%), Gaps = 4/240 (1%)

Query: 71  ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNT 130
           I A +  G L+ A  +F+ +   N V W+ ++ G+  +     A++ + RM      P+ 
Sbjct: 150 ITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDD 209

Query: 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK 190
                +L +CA+  A+ +GK +H ++   G++ + F  T+L++MY++ GE++ A  VF +
Sbjct: 210 TVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFER 269

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250
              ++ +++T +I G A  G   +A  LF +M        P++   + VL AC H G ++
Sbjct: 270 MQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQM--ESSGIRPDDIAFIGVLCACTHAGLVD 327

Query: 251 LGNWVC-SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGG 308
            G  +  S++  +G+   +     ++D+ ++ G L +A+++ + +  + D + W  ++ G
Sbjct: 328 KGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAG 387



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 124/269 (46%), Gaps = 42/269 (15%)

Query: 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMI 428
           + S + +LI  YA+ G +  A  +FD M  +   SW+AM++G    G   +AL +F+RM 
Sbjct: 142 DASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQ 201

Query: 429 GEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488
            E ++PDD   VGVL+AC   G L+ G+ + +  ++ + I   L     +VD+  + G  
Sbjct: 202 AEDVRPDDTVLVGVLAACAQHGALEQGK-WVHGYLKAHGIKINLFFGTALVDMYSKCGEV 260

Query: 489 DEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548
             A  + + M+ K +   WT+++    +HGR                    A +L + M 
Sbjct: 261 QLAMDVFERMQYK-NVLAWTTMIKGLAMHGR-----------------GSEAVMLFAQME 302

Query: 549 AGAGRWDDVATI-------RTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIY 601
           +   R DD+A I          L DKG +           S+V ++     + P+ +H  
Sbjct: 303 SSGIRPDDIAFIGVLCACTHAGLVDKGRELFD--------SMVRKY----GIKPKIEHYG 350

Query: 602 EMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
            M+D    LL ++GF+ +  E++  M  E
Sbjct: 351 CMVD----LLARNGFLYEAKEMIQKMPME 375


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 269/629 (42%), Positives = 372/629 (59%), Gaps = 69/629 (10%)

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN--GELESARLVFNKSSLRDAVSYT 200
           I+++    Q+H  VL+ G   D +V  +L+  YA       + A  VF+     +   + 
Sbjct: 43  ITSLQYLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWN 102

Query: 201 ALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE 260
            +I G      L  A   +  M I      PN+ T  T+  AC+   +++ G  +   + 
Sbjct: 103 IVIKGCLENNKLFKAIYFYGRMVIDAR---PNKFTYPTLFKACSVAQAVQEGRQIHGHVV 159

Query: 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALM 320
            HG+GS++H+ +A I MY+  G L  AR +F S E  DV+ WN MI GY      + A  
Sbjct: 160 KHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGES-DVVCWNTMIDGYLKCGVLEAAKG 218

Query: 321 LFRQMLQSNI---------------------------EPNDVTFLSV----LPACAYLGA 349
           LF QM   NI                           E +++++ S+    + A  Y  A
Sbjct: 219 LFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEA 278

Query: 350 LDL-----------GKWI--------------------HAYIDKNHQKLNNVSLWTSLID 378
           L++           G++I                    HAY+ +N  KL+ V L T+L+D
Sbjct: 279 LEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAV-LGTALLD 337

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
           MYAKCG +    +VF+ M  + + +WNAMI GLA+HG+A+ AL LFS++    ++P+ IT
Sbjct: 338 MYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGIT 397

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
            VGVL+AC HAG +D G + F  M + Y + P+L+HYGCMVDLLGR+GLF EAE L+ +M
Sbjct: 398 LVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSM 457

Query: 499 EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVA 558
            MKP+AA+W +LLGACR+HG  +L E V K LLELEP+N G YVLLSN+YA  GR+DDV+
Sbjct: 458 PMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVS 517

Query: 559 TIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVP 618
            IR  + D+G+K VPG S +++   VHEF +GD  HPQ K IY  L  I   L+ +G  P
Sbjct: 518 KIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSP 577

Query: 619 DTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLIS 678
           DTS+VL+D+DEE KE A+++HSEKLAIA+GLI+T PG  I IVKNLRVC +CHSATKLIS
Sbjct: 578 DTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLIS 637

Query: 679 KIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +IF+REII RDR R+HHFK+G CSC D+W
Sbjct: 638 QIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 134/467 (28%), Positives = 225/467 (48%), Gaps = 65/467 (13%)

Query: 17  FPPSSDPPYKLLQNQPSLALL--SKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAV 74
           F    + P   L  +  L L      T++Q + Q+H  ++++G     +    L++  A 
Sbjct: 18  FSAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHGLVLRSGHFQDHYVSGALLKCYAN 77

Query: 75  SPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFP 134
             F +  +AL VF +I  PN  IWN +I+G   ++    AI FY RM++    PN +T+P
Sbjct: 78  PHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDA-RPNKFTYP 136

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
            + K+C+   A+ EG+QIH HV+K G+ SD  + ++ I+MYA  G LE AR +F  S   
Sbjct: 137 TLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMF-YSGES 195

Query: 195 DAVSYTALITGY-------------------------------ASRGYLDDARQLFDEMP 223
           D V +  +I GY                               A  G L DAR+LFDEM 
Sbjct: 196 DVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMS 255

Query: 224 IRE-----------------------------ENFVPNESTVVTVLSACAHMGSLELGNW 254
            R+                             E   P    + +VL+AC+++G+++ G W
Sbjct: 256 ERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRW 315

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           V + ++ + +  +  +  AL+DMY+KCG L    ++FE +++R++ +WN MIGG      
Sbjct: 316 VHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGR 375

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
            ++AL LF ++ +  ++PN +T + VL ACA+ G +D G  I   + + +     +  + 
Sbjct: 376 AEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYG 435

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKA 420
            ++D+  + G    AE + + M  K   A W A++    +HG  D A
Sbjct: 436 CMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLA 482


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 269/629 (42%), Positives = 373/629 (59%), Gaps = 69/629 (10%)

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN--GELESARLVFNKSSLRDAVSYT 200
           I+++    Q+HA VL+ G   D +V  +L+  YA       + A  VF+     +   + 
Sbjct: 43  ITSLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWN 102

Query: 201 ALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE 260
            +I G      L  A   +  M I      PN+ T  T+  AC+   +++ G  +   + 
Sbjct: 103 IVIKGCLENNKLFKAIYFYGRMVIDAR---PNKFTYPTLFKACSVAQAVQEGRQIHGHVV 159

Query: 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALM 320
            HG+GS++H+ +A I MY+  G L  AR +F S E  DV+ WN MI GY      + A  
Sbjct: 160 KHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGES-DVVCWNTMIDGYLKCGVLEAAKG 218

Query: 321 LFRQMLQSNI---------------------------EPNDVTFLSV----LPACAYLGA 349
           LF QM   NI                           E +++++ S+    + A  Y  A
Sbjct: 219 LFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEA 278

Query: 350 LDL-----------GKWI--------------------HAYIDKNHQKLNNVSLWTSLID 378
           L++           G++I                    HAY+ +N  KL+ V L T+L+D
Sbjct: 279 LEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAV-LGTALLD 337

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
           MYAKCG +    +VF+ M  + + +WNAMI GLA+HG+A+ AL LFS++    ++P+ IT
Sbjct: 338 MYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGIT 397

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
            VGVL+AC HAG +D G + F  M + Y + P+L+HYGCMVDLLGR+GLF EAE L+ +M
Sbjct: 398 LVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSM 457

Query: 499 EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVA 558
            MKP+AA+W +LLGACR+HG  +L E V K LLELEP+N G YVLLSN+YA  GR+DDV+
Sbjct: 458 PMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVS 517

Query: 559 TIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVP 618
            IR  + ++G+K VPG S +++   VHEF +GD  HPQ K IY  L  I   L+ +G  P
Sbjct: 518 KIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSP 577

Query: 619 DTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLIS 678
           DTS+VL+D+DEE KE A+++HSEKLAIA+GLI+T PG  I IVKNLRVC +CHSATKLIS
Sbjct: 578 DTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLIS 637

Query: 679 KIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +IF+REII RDR R+HHFK+G CSC D+W
Sbjct: 638 QIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 134/467 (28%), Positives = 225/467 (48%), Gaps = 65/467 (13%)

Query: 17  FPPSSDPPYKLLQNQPSLALL--SKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAV 74
           F    + P   L  +  L L      T++Q + Q+H+ ++++G     +    L++  A 
Sbjct: 18  FSAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHALVLRSGHFQDHYVSGALLKCYAN 77

Query: 75  SPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFP 134
             F +  +AL VF +I  PN  IWN +I+G   ++    AI FY RM++    PN +T+P
Sbjct: 78  PHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDA-RPNKFTYP 136

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
            + K+C+   A+ EG+QIH HV+K G+ SD  + ++ I MYA  G LE AR +F  S   
Sbjct: 137 TLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMF-YSGES 195

Query: 195 DAVSYTALITGY-------------------------------ASRGYLDDARQLFDEMP 223
           D V +  +I GY                               A  G L DAR+LFDEM 
Sbjct: 196 DVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMS 255

Query: 224 IRE-----------------------------ENFVPNESTVVTVLSACAHMGSLELGNW 254
            R+                             E   P    + +VL+AC+++G+++ G W
Sbjct: 256 ERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRW 315

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           V + ++ + +  +  +  AL+DMY+KCG L    ++FE +++R++ +WN MIGG      
Sbjct: 316 VHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGR 375

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
            ++AL LF ++ +  ++PN +T + VL ACA+ G +D G  I   + + +     +  + 
Sbjct: 376 AEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYG 435

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKA 420
            ++D+  + G    AE + + M  K   A W A++    +HG  D A
Sbjct: 436 CMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLA 482


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 259/676 (38%), Positives = 402/676 (59%), Gaps = 22/676 (3%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEI---CAVSPFGDLSYALLVFETIREPNQVIWNNIIR 103
           + +H   I  GL    F  + L+++   CA  P  D ++   +F T+   + V WN ++ 
Sbjct: 145 RAIHRHAIHAGLQADLFVSTALLDMYVKCACLP--DAAH---IFATMPARDLVAWNAMLA 199

Query: 104 G--HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGL 161
           G  H       VA    ++M +    PN  T   +L   A+  A+++G  +HA+ ++  L
Sbjct: 200 GYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACL 259

Query: 162 ESDP----------FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
            S+            + T+L++MYA+ G L  AR VF+    R+ V+++ALI G+     
Sbjct: 260 HSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSR 319

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
           +  A  LF  M  +   F+ + +++ + L ACA +  L +G  + +L+   G+ ++L   
Sbjct: 320 MTQAFLLFKAMLAQGLCFL-SPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAG 378

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N+L+ MY+K G + +A  LF+ +  +D +S++ ++ GY      +EA ++F++M   N+E
Sbjct: 379 NSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVE 438

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+  T +S++PAC++L AL  G+  H  +       +  S+  +LIDMYAKCG I  + Q
Sbjct: 439 PDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLA-SETSICNALIDMYAKCGRIDLSRQ 497

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VF+ M  + + SWN MI+G  +HG   +A +LF  M   G  PD +TF+ +LSAC+H+GL
Sbjct: 498 VFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGL 557

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           +  G+ +F+ M   Y ++P+++HY CMVDLL R G  DEA   +++M ++ D  +W +LL
Sbjct: 558 VIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALL 617

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
           GACRV+  ++LG+ V++ + EL PE  G +VLLSN+Y+ AGR+D+ A +R     +G KK
Sbjct: 618 GACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKK 677

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
            PGCS IE+   +H F+ GD+ HPQS  IY  LD I   ++K G+ PDTS VL D++EE 
Sbjct: 678 SPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEE 737

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           KE AL  HSEKLAIAYG++S     TI + KNLRVCG+CH+  K IS +  R II RD N
Sbjct: 738 KEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLLKRRAIIVRDAN 797

Query: 692 RFHHFKDGNCSCNDYW 707
           RFHHFK+G CSC D+W
Sbjct: 798 RFHHFKNGQCSCGDFW 813



 Score =  234 bits (598), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 166/570 (29%), Positives = 275/570 (48%), Gaps = 56/570 (9%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVA---IKFYVRMILSGFVPNTYTFP 134
           G LS A  +F+ I  P+   +N++IR +S SSSP  A   +  Y RM+     PN YTFP
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYS-SSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
           F LK+C+ ++    G+ IH H +  GL++D FV T+L++MY +   L  A  +F     R
Sbjct: 130 FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
           D V++ A++ GYA  G    A      M ++     PN ST+V +L   A  G+L  G  
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 255 VCSLIEGHGLGSNLH----------VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
           V +      L SN +          +  AL+DMY+KCG L+ AR +F+++  R+ ++W+ 
Sbjct: 250 VHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSA 309

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSN---IEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361
           +IGG+   S   +A +LF+ ML      + P  +   S L ACA L  L +G+ +HA + 
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQLHALLA 367

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421
           K+     +++   SL+ MYAK G I  A  +FD M  K   S++A++SG   +G+A++A 
Sbjct: 368 KSGVH-ADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAF 426

Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481
            +F +M    ++PD  T V ++ AC+H   L  GR    ++I    ++ +      ++D+
Sbjct: 427 LVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASETSICNALIDM 485

Query: 482 LGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE----PEN 537
             + G  D +  +   M  + D   W +++    +HG   LG+      LE+     P +
Sbjct: 486 YAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIHG---LGKEATALFLEMNNLGFPPD 541

Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQS 597
              ++ L +  + +G                         IE     H    G  + P+ 
Sbjct: 542 GVTFICLLSACSHSGL-----------------------VIEGKHWFHVMRHGYGLTPRM 578

Query: 598 KHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
           +H   M+D    LL + GF+ +  E +  M
Sbjct: 579 EHYICMVD----LLSRGGFLDEAYEFIQSM 604


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 250/618 (40%), Positives = 382/618 (61%), Gaps = 39/618 (6%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L+LL   T++  I Q+H+Q +  GL      + KLI++ ++       YA  V +    P
Sbjct: 3   LSLLRTATSLTQIHQIHAQTLIHGLPLQTHLIPKLIDLHSID------YARFVLDQTPSP 56

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
               WN++IR +++  SP  ++  Y++M+ S   P+ +TFPF+LK+C+ + ++ EG+QIH
Sbjct: 57  TDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIH 116

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
            HVL+LG  SD FV  SLI+MY +   L+SAR  ++    RD VS+ ++I+GY   G ++
Sbjct: 117 THVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVE 176

Query: 214 DARQLFDEMPIR---------------EENFV-----------------PNESTVVTVLS 241
            AR LF+EMP+R               E +FV                 PN +T+V +LS
Sbjct: 177 KARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLS 236

Query: 242 ACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVIS 301
           AC+ + + E+G ++   I+ + +  N  +  ALIDMYSKCGD+ KA  +F+ +  +++ S
Sbjct: 237 ACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPS 296

Query: 302 WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361
           WN +I G       +EA+ L+R M   +++PN++T ++VL ACA LGAL+LG+ +H Y+ 
Sbjct: 297 WNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLG 356

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421
           +N   LN V L T+L+DMYAKCG I  A  +F     K +A WNAMI GLA HG    +L
Sbjct: 357 RNGLDLN-VILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSL 415

Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481
           ++FS+M+  G+QP+D+TF+GVLSACNH+GL++ GR  F++M   + +SPKL+HY CMVDL
Sbjct: 416 AVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDL 475

Query: 482 LGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541
           LGRAG   EA  L++ M + PD+ IW +LL ACR+H  LEL + +++ ++  +  N G  
Sbjct: 476 LGRAGHLKEAYELVQNMLIPPDSIIWGALLSACRIHRNLELADKISETIMASQDPNIGFC 535

Query: 542 VLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIY 601
           +LLSN+YA +GRW DVA +R ++ +K +KK  GCS +EV  VVH F+V D  H +S  IY
Sbjct: 536 ILLSNIYASSGRWKDVARVRRQVKEKRIKKPSGCSWVEVDGVVHRFVVEDTTHLKSGEIY 595

Query: 602 EMLDEIDALLEKSGFVPD 619
              + +   L+  G+V +
Sbjct: 596 GAYEILVNHLKAEGYVAN 613


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 279/746 (37%), Positives = 427/746 (57%), Gaps = 53/746 (7%)

Query: 4   PPSSLTLSPSI-LHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIK---QVHSQIIKTGLH 59
           P ++LT    +  H  PS++  +         ALL  C  ++ +    QVH+ + + GL 
Sbjct: 33  PQTALTFFTRMQAHAVPSNNFTFP--------ALLKACAALRRLLPTLQVHAYLTRLGLA 84

Query: 60  NTQFALSKLIEICAVSPFGDLSYALLVFETIREP--NQVIWNNIIRGHSLSSSPVVAIKF 117
             +F+ + L++  A    G   YA  VF+ + E   + V W  +I  +S +     A K 
Sbjct: 85  ADRFSAAALVD--AYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFKA 142

Query: 118 YVRM-ILSGFVP------NTYTFPFILKSCA---KISAISEGKQIHAHVLKLGLESDPFV 167
           + RM  + G+        +  +   ++ +CA     + +  G  +H  V+K G      +
Sbjct: 143 FGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHL 202

Query: 168 HTSLINMYAQNGELESARLVFNKSSL--RDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
             S+++MY+   ++  A  VFN   +  RD VS+ +LI+G+   G  + A + F++M   
Sbjct: 203 GNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSE 262

Query: 226 EENFV-PNESTVVTVLSACAHMGSLELGNWVCSLIEGHG----LGSNLHVTNALIDMYSK 280
             + V PN  TV+ +L +CA +G +E  +WV   I        +  ++ V  AL+DM+++
Sbjct: 263 GTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHAR 322

Query: 281 CGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN------IEPND 334
           CG+L  AR++F+ +E ++V+ W+ MI GY   S  +EAL LFRQML         ++PN 
Sbjct: 323 CGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNA 382

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           VT +SV+ AC+ LGA      IH Y         +  + ++LIDM AKCG+I+   QVF 
Sbjct: 383 VTLVSVIAACSRLGASRSASMIHKYAVATGLD-QDARIASALIDMCAKCGDIEHGRQVFS 441

Query: 395 GM--GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
            M    +T+ SW++MI    +HG+  +AL LFS M   G +P++IT++ VLSAC+HAGL+
Sbjct: 442 EMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLV 501

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           + G+  FN+M +DY +SP  +HY C+VDLLGRAG  DEA  ++  M +K D A+W SLL 
Sbjct: 502 EQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLA 561

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           AC +HG  +LGE V K +L L+  + G +VLL+NMY  AGRWDDV  +R  L   G++K+
Sbjct: 562 ACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKI 621

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSG-FVPDTSEVLYDMDEEW 631
           PG S IE+G+ V+ F+  D+ HP+S+ IY+ LD +D  + K+  +V +T   + D D   
Sbjct: 622 PGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGLDERVRKAAKYVTETGLNVEDGDIAG 681

Query: 632 KEGALSHHSEKLAIAYGLI----------STKPGTTIRIVKNLRVCGNCHSATKLISKIF 681
                 +HSE+LAIA+GLI          S +  T IRI KNLRVC +CH+ TKL+SK+ 
Sbjct: 682 LILRCKYHSERLAIAFGLIMIDRHSTCSCSLRTATPIRITKNLRVCRDCHAYTKLVSKVI 741

Query: 682 NREIIARDRNRFHHFKDGNCSCNDYW 707
           +RE+I RD +RFHHF+DG CSC DYW
Sbjct: 742 DRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  240 bits (613), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 152/483 (31%), Positives = 253/483 (52%), Gaps = 43/483 (8%)

Query: 89  TIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE 148
           +I   +   WN++I   + + +P  A+ F+ RM       N +TFP +LK+CA +  +  
Sbjct: 12  SISHKDTFHWNSLI-AKNATQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLP 70

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK--SSLRDAVSYTALITGY 206
             Q+HA++ +LGL +D F   +L++ Y + G    A  VF++      D VS+TALI+ Y
Sbjct: 71  TLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAY 130

Query: 207 ASRGYLDDARQLFDEMPIRE-----ENFVPNESTVVTVLSACA-HMGS--LELGNWVCSL 258
           +S G +D+A + F  M         E    +  ++  ++SACA   GS  L  G+ V  L
Sbjct: 131 SSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGL 190

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES--IEKRDVISWNVMIGGYTHTSDYK 316
           +  +G G + H+ N+++ MYS C D+  A  +F    IE+RDV+SWN +I G+T   + +
Sbjct: 191 VVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAE 250

Query: 317 EALMLFRQMLQ---SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL---NNV 370
            AL  F  M+    S +EPN VT +++L +CA LG ++   W+H YI   H  L    +V
Sbjct: 251 RALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDV 310

Query: 371 SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE 430
            + T+L+DM+A+CGN+  A ++FDG+  K +  W+AMI+G       ++AL LF +M+ E
Sbjct: 311 VVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLME 370

Query: 431 G------LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQH----YGCMVD 480
           G      ++P+ +T V V++AC+      +G     +MI  Y ++  L         ++D
Sbjct: 371 GNMVGVEVKPNAVTLVSVIAACSR-----LGASRSASMIHKYAVATGLDQDARIASALID 425

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAI-WTSLLGACRVHGRLELGESVAKHLLELEPE-NP 538
           +  + G  +    +   M+      + W+S++GA  +HG         K  LEL  E   
Sbjct: 426 MCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGE-------GKRALELFSEMRT 478

Query: 539 GAY 541
           G Y
Sbjct: 479 GGY 481


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 280/699 (40%), Positives = 404/699 (57%), Gaps = 51/699 (7%)

Query: 40  CTNMQNI----KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ 95
           C+N+ N     KQVH+ +++ G   T F  + L+ + A    G +  A  +F+   + + 
Sbjct: 196 CSNLINGLLLGKQVHAFVLRNGDWRT-FTNNALVTMYA--KLGRVYEAKTLFDVFDDKDL 252

Query: 96  VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAH 155
           V WN II   S +     A+ +   M+ SG  PN  T   +L +C+ +  +  GK+IHA 
Sbjct: 253 VSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAF 312

Query: 156 VL-KLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
           VL    L  + FV  +L++MY    + E  RLVF+    R    + A+I GY    +  +
Sbjct: 313 VLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYE 372

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274
           A +LF EM + E    PN  T+ +VL AC    S      + S +   G   + +V NAL
Sbjct: 373 AIELFVEM-VFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQNAL 431

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE--- 331
           +DMYS+ G +  AR +F S+ ++D++SWN MI GY     + +AL L   M +   E   
Sbjct: 432 MDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRI 491

Query: 332 ---------------PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN-NVSLWTS 375
                          PN VT ++VLP CA L AL  GK IHAY  K  Q L+ +V++ ++
Sbjct: 492 NTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVK--QMLSKDVAVGSA 549

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG---- 431
           L+DMYAKCG +  +  VF+ M  + + +WN +I    MHGK ++AL LF RM+ EG    
Sbjct: 550 LVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNR 609

Query: 432 -LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
            ++P+++T++ + ++ +H+G++D G   F  M   + I P   HY C+VDLLGR+G  +E
Sbjct: 610 EIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEE 669

Query: 491 AEALLKTM--EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548
           A  L+KTM   MK   A W+SLLGAC++H  LE+GE  AK+L  L+P N   Y    +M 
Sbjct: 670 AYNLIKTMPSNMKKVDA-WSSLLGACKIHQNLEIGEIAAKNLFVLDP-NVLDYGTKQSML 727

Query: 549 AGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEID 608
              GR         ++ +KG++K PGCS IE G  VH+FL GD  HPQSK ++E L+ + 
Sbjct: 728 ---GR---------KMKEKGVRKEPGCSWIEHGDEVHKFLAGDVSHPQSKEVHEYLETLS 775

Query: 609 ALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCG 668
             ++K G+VPDTS VL+++ EE KE  L  HSE+LAIA+GL++T PGTTIR+ KNLRVC 
Sbjct: 776 LRMKKEGYVPDTSCVLHNVGEEEKETMLCGHSERLAIAFGLLNTSPGTTIRVAKNLRVCN 835

Query: 669 NCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +CH ATK ISKI +REII RD  RFHHF++G CSC DYW
Sbjct: 836 DCHVATKFISKIVDREIILRDVRRFHHFRNGTCSCGDYW 874



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 146/433 (33%), Positives = 233/433 (53%), Gaps = 12/433 (2%)

Query: 91  REPNQVIWNNIIRGHSLSSSPV-VAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG 149
           R P++  W + +R  + SSS    AI  Y  M+ +G  P+ + FP +LK+ A I  ++ G
Sbjct: 47  RLPSE--WVSHLRSQTQSSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLG 104

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           KQ+HAHV K G      V  SL+NMY + G++++AR VF++ + RD VS+ ++I      
Sbjct: 105 KQLHAHVFKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRF 164

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHM-GSLELGNWVCSLIEGHGLGSNL 268
              + A  LF  M +  EN  P   T+V+V  AC+++   L LG  V + +  +G     
Sbjct: 165 EEWELAVHLFRLMLL--ENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTF 222

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
              NAL+ MY+K G + +A+ LF+  + +D++SWN +I   +    ++EAL+    MLQS
Sbjct: 223 -TNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQS 281

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            + PN VT  SVLPAC++L  L  GK IHA++  N+  + N  +  +L+DMY  C   + 
Sbjct: 282 GVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEK 341

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE-GLQPDDITFVGVLSACN 447
              VFDGM  +T+A WNAMI+G   +    +A+ LF  M+ E GL P+ +T   VL AC 
Sbjct: 342 GRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACV 401

Query: 448 HA-GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
                LD  ++  ++ +  +           ++D+  R G  + A ++  +M  K D   
Sbjct: 402 RCESFLD--KEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRK-DIVS 458

Query: 507 WTSLLGACRVHGR 519
           W +++    V GR
Sbjct: 459 WNTMITGYVVCGR 471



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 141/523 (26%), Positives = 248/523 (47%), Gaps = 34/523 (6%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           A+L     +Q++   KQ+H+ + K G        + L+ +      GD+  A  VF+ I 
Sbjct: 90  AVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLVNM--YGKCGDIDAARRVFDEIT 147

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK-ISAISEGK 150
             + V WN++I          +A+  +  M+L    P ++T   +  +C+  I+ +  GK
Sbjct: 148 NRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGK 207

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           Q+HA VL+ G +   F + +L+ MYA+ G +  A+ +F+    +D VS+  +I+  +   
Sbjct: 208 QVHAFVLRNG-DWRTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQND 266

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI-EGHGLGSNLH 269
             ++A      M   +    PN  T+ +VL AC+H+  L  G  + + +   + L  N  
Sbjct: 267 RFEEALLYLHVM--LQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSF 324

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-QS 328
           V  AL+DMY  C    K R +F+ + +R +  WN MI GY       EA+ LF +M+ + 
Sbjct: 325 VGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFEL 384

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK-NHQKLNNVSLWTSLIDMYAKCGNIK 387
            + PN VT  SVLPAC    +    + IH+ + K   +K   V    +L+DMY++ G I+
Sbjct: 385 GLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQ--NALMDMYSRMGRIE 442

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMI-GEG--------------- 431
            A  +F  M  K + SWN MI+G  + G+ D AL+L   M  G+                
Sbjct: 443 IARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKN 502

Query: 432 --LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489
             L+P+ +T + VL  C     L  G++  +A      +S  +     +VD+  + G  +
Sbjct: 503 FPLKPNSVTLMTVLPGCAALAALGKGKE-IHAYAVKQMLSKDVAVGSALVDMYAKCGCLN 561

Query: 490 EAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
            +  + + M ++ +   W  L+ A  +HG+ E    + + ++E
Sbjct: 562 LSRTVFEQMSVR-NVITWNVLIMAYGMHGKGEEALKLFRRMVE 603


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 254/610 (41%), Positives = 370/610 (60%), Gaps = 22/610 (3%)

Query: 119 VRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN 178
           ++M L GF      +  IL  C    A  EG+++HAH++K       F+ T LI +Y + 
Sbjct: 232 LQMALHGFNMKFENYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKC 291

Query: 179 GELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLF--------------DEMPI 224
             L  A  VF++   R+ VS+TA+I+ Y+ RGY   A  LF              D++ +
Sbjct: 292 DSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKL 351

Query: 225 REEN-----FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYS 279
              N       PNE T  TVL++C       LG  + SLI       ++ V ++L+DMY+
Sbjct: 352 SNPNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYA 411

Query: 280 KCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS 339
           K G + +AR +FE + +RDV+S   +I GY      +EAL LFR++    ++ N VT+  
Sbjct: 412 KDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTG 471

Query: 340 VLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK 399
           VL A + L ALDLGK +H ++ ++ +  + V L  SLIDMY+KCGN+  + ++FD M  +
Sbjct: 472 VLTALSGLAALDLGKQVHNHVLRS-EIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYER 530

Query: 400 TLASWNAMISGLAMHGKADKALSLFSRMIGE-GLQPDDITFVGVLSACNHAGLLDIGRQY 458
           T+ SWNAM+ G + HG+  + L LF+ M  E  ++PD +T + VLS C+H GL D G   
Sbjct: 531 TVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNI 590

Query: 459 FNAMIQ-DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
           FN M     ++ PK++HYGC+VDLLGR+G  +EA   +K M  +P AAIW SLLGACRVH
Sbjct: 591 FNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVH 650

Query: 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577
             +++GE   + LLE+EP N G YV+LSN+YA AGRW+DV+++R  +  K + K PG SS
Sbjct: 651 SNVDIGEFAGQQLLEIEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSS 710

Query: 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALS 637
           IE+  V+H F   D+ HP+ + I   + E+    ++ G+VPD S VL+D+DEE KE  L 
Sbjct: 711 IELDQVLHTFHASDRSHPRREEICMKVKELSTSFKEVGYVPDLSCVLHDVDEEQKEKILL 770

Query: 638 HHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFK 697
            HSEKLA+++GLI++     IR++KNLR+C +CH+  K ISK++ RE+  RD+NRFH   
Sbjct: 771 GHSEKLALSFGLIASPASVPIRVIKNLRICVDCHNFAKYISKVYGREVSLRDKNRFHRIV 830

Query: 698 DGNCSCNDYW 707
            G CSC DYW
Sbjct: 831 GGKCSCEDYW 840



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 114/217 (52%), Gaps = 8/217 (3%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
            +L+ CT+       +Q+HS IIK    +  F  S L+++ A    G +  A  VFE + 
Sbjct: 370 TVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKD--GKIHEARTVFECLP 427

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           E + V    II G++       A++ + R+   G   N  T+  +L + + ++A+  GKQ
Sbjct: 428 ERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQ 487

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +H HVL+  + S   +  SLI+MY++ G L  +R +F+    R  +S+ A++ GY+  G 
Sbjct: 488 VHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGE 547

Query: 212 LDDARQLFDEMPIREENFV-PNESTVVTVLSACAHMG 247
             +  +LF  M  REE  V P+  T++ VLS C+H G
Sbjct: 548 GREVLKLFTLM--REETKVKPDSVTILAVLSGCSHGG 582


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 252/616 (40%), Positives = 370/616 (60%), Gaps = 19/616 (3%)

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
           WN  +R  +  S    +I  Y  M+ SG  P+ ++FPFILKSCA +S    G+Q+H HV+
Sbjct: 18  WNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVI 77

Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVF--NKSSLRDAVSYTALITGYASRGYLDDA 215
           + G E++PFV T+LI+MY + G +E AR VF  N  S +  V Y ALI+GY +   + DA
Sbjct: 78  RGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDA 137

Query: 216 RQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALI 275
             +F  M  +E     +  T++ ++  C     L LG  +       G  S + V N+ I
Sbjct: 138 AFMFRRM--KETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFI 195

Query: 276 DMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV 335
            MY KCG +   R LF+ +  + +I+WN +I GY+      + L LF QM  S + P+  
Sbjct: 196 TMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPF 255

Query: 336 TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
           T +SVL +CA+LGA  +G+ +   ++ N     NV L  +LI MYA+CGN+  A  VFD 
Sbjct: 256 TLVSVLSSCAHLGAKKIGQEVGELVEANGFA-PNVFLSNALISMYARCGNLAKARAVFDI 314

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
           M  K+L SW AMI    MHG  +  L+LF  MI  G++PD   FV VLSAC+H+GL D G
Sbjct: 315 MPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKG 374

Query: 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACR 515
            + F AM ++YK+ P  +HY C+VDLLGRAG  DEA   + +M ++PD A+W +LLGAC+
Sbjct: 375 LELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACK 434

Query: 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGC 575
           +H  +++ E     ++E EP N G YVL+SN+Y+ +   + +  IR  + ++  +K PG 
Sbjct: 435 IHKNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGY 494

Query: 576 SSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEID-ALLEKSGFVPDTSEVLYDMDEEWKEG 634
           S +E    VH FL GD+ H Q++ ++ MLDE++ +++E +G          +MD +  E 
Sbjct: 495 SYVEHKGKVHLFLAGDRSHEQTEEVHRMLDELETSVMELAG----------NMDCDRGEE 544

Query: 635 ALS---HHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
             S    HSE+LAIA+G++++ PGT I ++KNLRVC +CH   KL+SKI +R  + RD +
Sbjct: 545 VSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFIKLVSKIVDRRFVVRDAS 604

Query: 692 RFHHFKDGNCSCNDYW 707
           RFH+FKDG CSC DYW
Sbjct: 605 RFHYFKDGVCSCKDYW 620



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/401 (28%), Positives = 209/401 (52%), Gaps = 9/401 (2%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ--VIWNNIIRG 104
           +Q+H  +I+ G     F L+ LI +      G +  A  VFE     +Q  V +N +I G
Sbjct: 70  QQLHCHVIRGGCEAEPFVLTALISM--YCKCGLVEDARKVFEENPHSSQLGVCYNALISG 127

Query: 105 HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESD 164
           ++ +S    A   + RM  +G   ++ T   ++  C     +  G+ +H   +K G  S+
Sbjct: 128 YTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSE 187

Query: 165 PFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPI 224
             V  S I MY + G +ES R +F++  ++  +++ A+I+GY+  G   D  +LF++M  
Sbjct: 188 VAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQM-- 245

Query: 225 REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
           +     P+  T+V+VLS+CAH+G+ ++G  V  L+E +G   N+ ++NALI MY++CG+L
Sbjct: 246 KSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNL 305

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
            KAR +F+ +  + ++SW  MIG Y      +  L LF  M++  I P+   F+ VL AC
Sbjct: 306 AKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSAC 365

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLAS 403
           ++ G  D G  +   + + ++       ++ L+D+  + G +  A +  D M  +   A 
Sbjct: 366 SHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAV 425

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
           W A++    +H   D A   F+++I    +P +I +  ++S
Sbjct: 426 WGALLGACKIHKNVDMAELAFAKVI--EFEPMNIGYYVLMS 464



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 146/309 (47%), Gaps = 11/309 (3%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           L L+  CT  + +   + +H + +K G ++    L+  I +      G +     +F+ +
Sbjct: 157 LGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITM--YMKCGSVESGRRLFDEM 214

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
                + WN +I G+S +      ++ + +M  SG  P+ +T   +L SCA + A   G+
Sbjct: 215 PVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQ 274

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           ++   V   G   + F+  +LI+MYA+ G L  AR VF+   ++  VS+TA+I  Y   G
Sbjct: 275 EVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHG 334

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLH 269
             +    LFD+M  R     P+ +  V VLSAC+H G  + G     ++   + L     
Sbjct: 335 MGETGLTLFDDMIKR--GIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPE 392

Query: 270 VTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
             + L+D+  + G L +A +  +S+  + D   W  ++G      +   A + F ++++ 
Sbjct: 393 HYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIE- 451

Query: 329 NIEPNDVTF 337
             EP ++ +
Sbjct: 452 -FEPMNIGY 459



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 127/289 (43%), Gaps = 39/289 (13%)

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           SWNV +    + S + E++ L+R ML+S   P+  +F  +L +CA L     G+ +H ++
Sbjct: 17  SWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 76

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL--ASWNAMISGLAMHGKAD 418
            +   +     L T+LI MY KCG ++ A +VF+   + +     +NA+ISG   + K  
Sbjct: 77  IRGGCEAEPFVL-TALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVS 135

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ---------------YFNAMI 463
            A  +F RM   G+  D +T +G++  C     L +GR                  N+ I
Sbjct: 136 DAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFI 195

Query: 464 QDYKISPKLQHYGCMVDLLGRAGL----------------FDEAEAL--LKTMEMKPDAA 505
             Y     ++    + D +   GL                +D  E    +K+  + PD  
Sbjct: 196 TMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPF 255

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV--LLSNMYAGAG 552
              S+L +C   G  ++G+ V + L+E     P  ++   L +MYA  G
Sbjct: 256 TLVSVLSSCAHLGAKKIGQEVGE-LVEANGFAPNVFLSNALISMYARCG 303


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 255/575 (44%), Positives = 360/575 (62%), Gaps = 9/575 (1%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN--GELESARLVFNKSSL 193
           +LK C   S + E KQ HA +LKLGL  D F  ++L+   A +  G ++ A  +F +   
Sbjct: 37  LLKKC---SNMEEFKQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMDE 93

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
             +  +  ++ G+      ++A   + EM   E    P+  T  T+L ACA + ++E G 
Sbjct: 94  LGSFQFNTMMRGHVKDMNTEEALITYKEMA--ERGVKPDNFTYPTLLKACARLPAVEEGM 151

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTS 313
            V + I   GL +++ V N+LI MY KCG++     +FE + +R V SW+ +I  +    
Sbjct: 152 QVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLG 211

Query: 314 DYKEALMLFRQMLQSNI-EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
            + + L L   M         +   +SVL AC +LGALDLG+ +H ++ +N   LN V +
Sbjct: 212 MWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLN-VIV 270

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
            TSLI+MY KCG++     +F  M  K   S++ MISGLAMHG   + L +F+ M+ +GL
Sbjct: 271 ETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGL 330

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
           +PDDI +VGVL+AC+HAGL+  G Q FN M  ++ I P +QHYGCMVDL+GRAG  DEA 
Sbjct: 331 EPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEAL 390

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552
            L+K+M M+P+  +W SLL A +VH  L+ GE  AK L +L+ +    YV+LSNMYA A 
Sbjct: 391 ELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQ 450

Query: 553 RWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE 612
           RW+DVA  RT +  KG+ + PG S +EV   +H F+  D  HPQS+ +YEML +++  L+
Sbjct: 451 RWEDVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLK 510

Query: 613 KSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHS 672
             G+ PDT++VL D+DEE K+  LS HS+KLAIAY LI T  G+ IRIV+NLR+C +CH+
Sbjct: 511 FEGYSPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPIRIVRNLRMCNDCHT 570

Query: 673 ATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            TKLIS IF+REI  RDR+RFHHFKDG CSC DYW
Sbjct: 571 YTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 605



 Score =  253 bits (647), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 138/398 (34%), Positives = 222/398 (55%), Gaps = 2/398 (0%)

Query: 18  PPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF 77
           PP S      L  +  ++LL KC+NM+  KQ H++I+K GL    F  S L+  CA+S +
Sbjct: 19  PPQSPELSFKLGEKECVSLLKKCSNMEEFKQSHARILKLGLFGDSFCASNLVATCALSDW 78

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G + YA  +F  + E     +N ++RGH    +   A+  Y  M   G  P+ +T+P +L
Sbjct: 79  GSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLL 138

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
           K+CA++ A+ EG Q+HAH+LKLGLE+D FV  SLI+MY + GE+     VF + + R   
Sbjct: 139 KACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVA 198

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           S++ALIT +AS G   D  +L  +M   E  +   ES +V+VLSAC H+G+L+LG  V  
Sbjct: 199 SWSALITAHASLGMWSDCLRLLGDMS-NEGYWRAEESILVSVLSACTHLGALDLGRSVHG 257

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
            +  +  G N+ V  +LI+MY KCG L K   LF+ + K++ +S++VMI G       +E
Sbjct: 258 FLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGRE 317

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
            L +F +ML+  +EP+D+ ++ VL AC++ G +  G      +   H     +  +  ++
Sbjct: 318 GLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMV 377

Query: 378 DMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMH 414
           D+  + G I  A ++   M  +     W +++S   +H
Sbjct: 378 DLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVH 415


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 246/583 (42%), Positives = 371/583 (63%), Gaps = 9/583 (1%)

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
           G   +  T+  ++K C+   A+ EGK++H H+   G E   FV  +L+NMY +   LE A
Sbjct: 50  GVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEA 109

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
             +F++   R+ VS+T +I+ Y+++  L+D + L   + +  E   PN  T  +VL AC 
Sbjct: 110 EDLFDEMPERNVVSWTTMISAYSNK--LND-KALKCLILMFREGVRPNMFTYSSVLRACD 166

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
            + +L   +  C +I+  GL S++ V +ALID+YSK  DL  A  +F+ +  RD++ WN 
Sbjct: 167 GLPNLRQLH--CGIIKT-GLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNS 223

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           +IGG+   SD  EAL LF++M ++    +  T  SVL AC  L  L+LG+ +H ++ K  
Sbjct: 224 IIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKFD 283

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF 424
           Q L    L  +LIDMY KCG+++ A   F  M  K + SW+ M++GLA +G + +AL LF
Sbjct: 284 QDL---ILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELF 340

Query: 425 SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484
             M   G +P+ IT +GVL AC+HAGL++ G  YF +M + + + P  +HYGC++DLLGR
Sbjct: 341 ESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGR 400

Query: 485 AGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL 544
           AG  DEA  L+  ME +PD+  W +LLGACRVH  ++L    AK ++ELEPE+ G Y+LL
Sbjct: 401 AGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILL 460

Query: 545 SNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEML 604
           SN+YA   RW+DVA +R  + ++G++K PGCS IEV   +H F++GD  HP+ + I + L
Sbjct: 461 SNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRL 520

Query: 605 DEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNL 664
           +++   +   G+VPDT+ VL D++ E KE +L +HSEKLAI +GL++     T+RI KNL
Sbjct: 521 NDLIERVMGVGYVPDTNFVLQDLEGEQKEDSLRYHSEKLAIMFGLMNLSREKTVRIRKNL 580

Query: 665 RVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           R+CG+CH   K++S++ +R I+ RD  R+HHF+DG CSC DYW
Sbjct: 581 RICGDCHVFAKVVSRMEHRSIVIRDPIRYHHFQDGVCSCGDYW 623



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 124/409 (30%), Positives = 210/409 (51%), Gaps = 25/409 (6%)

Query: 37  LSKCTN----MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           L KC +    +Q  K+VH  I   G     F ++ L+ +     F  L  A  +F+ + E
Sbjct: 61  LIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNM--YVKFNLLEEAEDLFDEMPE 118

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            N V W  +I  +S   +   A+K  + M   G  PN +T+  +L++C  +  +   +Q+
Sbjct: 119 RNVVSWTTMISAYSNKLNDK-ALKCLILMFREGVRPNMFTYSSVLRACDGLPNL---RQL 174

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H  ++K GLESD FV ++LI++Y++  +L++A  VF++   RD V + ++I G+A     
Sbjct: 175 HCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDG 234

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           ++A  LF  M  +   F+ +++T+ +VL AC  +  LELG  V   +       +L + N
Sbjct: 235 NEALNLFKRM--KRAGFLADQATLTSVLRACTGLALLELGRQV--HVHVLKFDQDLILNN 290

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           ALIDMY KCG L  A   F  + ++DVISW+ M+ G       ++AL LF  M +S   P
Sbjct: 291 ALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRP 350

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNV----SLWTSLIDMYAKCGNIKA 388
           N +T L VL AC++ G ++ G W   Y  ++ +KL  V      +  LID+  + G +  
Sbjct: 351 NYITVLGVLFACSHAGLVEKG-W---YYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDE 406

Query: 389 AEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           A ++   M  +    +W  ++    +H   D A+    ++I   L+P+D
Sbjct: 407 AVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKII--ELEPED 453



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 165/302 (54%), Gaps = 10/302 (3%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           ++L  C  + N++Q+H  IIKTGL +  F  S LI++   S + DL  AL VF+ +   +
Sbjct: 160 SVLRACDGLPNLRQLHCGIIKTGLESDVFVRSALIDV--YSKWSDLDNALGVFDEMPTRD 217

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
            V+WN+II G + +S    A+  + RM  +GF+ +  T   +L++C  ++ +  G+Q+H 
Sbjct: 218 LVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHV 277

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
           HVLK   + D  ++ +LI+MY + G LE A   F++   +D +S++ ++ G A  GY   
Sbjct: 278 HVLK--FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQ 335

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVTNA 273
           A +LF+ M  +E    PN  TV+ VL AC+H G +E G  +  S+ +  G+         
Sbjct: 336 ALELFESM--KESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGC 393

Query: 274 LIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           LID+  + G L +A  L   +E + D ++W  ++G      +   A+   +++++  +EP
Sbjct: 394 LIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIE--LEP 451

Query: 333 ND 334
            D
Sbjct: 452 ED 453



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 131/302 (43%), Gaps = 53/302 (17%)

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI-DKNH 364
              + H  D   A+     M +  +  + +T+  ++  C+  GA+  GK +H +I  K +
Sbjct: 27  FANFCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGY 86

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF 424
           +    + +  +L++MY K   ++ AE +FD M  + + SW  MIS  + +   DKAL   
Sbjct: 87  EP--KMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYS-NKLNDKALKCL 143

Query: 425 SRMIGEGLQPDDITFVGVLSACN--------HAGLLDIGRQYFNAMIQDYKISPKLQHYG 476
             M  EG++P+  T+  VL AC+        H G++  G +  +  ++    S  +  Y 
Sbjct: 144 ILMFREGVRPNMFTYSSVLRACDGLPNLRQLHCGIIKTGLES-DVFVR----SALIDVYS 198

Query: 477 CMVDLLGRAGLFDEA----------------------EALLKTMEMK-----PDAAIWTS 509
              DL    G+FDE                       EAL     MK      D A  TS
Sbjct: 199 KWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTS 258

Query: 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSN----MYAGAGRWDDVATIRTRLN 565
           +L AC     LELG  V  H+L+ + +     ++L+N    MY   G  +D  +  +R+ 
Sbjct: 259 VLRACTGLALLELGRQVHVHVLKFDQD-----LILNNALIDMYCKCGSLEDANSAFSRMV 313

Query: 566 DK 567
           +K
Sbjct: 314 EK 315


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 251/590 (42%), Positives = 357/590 (60%), Gaps = 17/590 (2%)

Query: 132 TFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ-----------NGE 180
           + P  LKSCA +   + G  +HA  L+ G  +D F   +L+N+Y +           +G 
Sbjct: 60  SLPGALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGS 119

Query: 181 ---LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVV 237
              LES R VF++   +D VS+  L+ G A  G   +A  L  EM    +   P+  T+ 
Sbjct: 120 AVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREM--WRDGCKPDSFTLS 177

Query: 238 TVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR 297
           +VL   A    +  G  +      +G   ++ V ++LIDMY+ C     +  +F+++  R
Sbjct: 178 SVLPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR 237

Query: 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357
           D I WN M+ G        EAL LFR+ML S I+P  VTF S++PAC  L +L LGK +H
Sbjct: 238 DAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLH 297

Query: 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA 417
           AY+ +      NV + +SLIDMY KCGN+  A ++FD +    + SW AMI G A+HG A
Sbjct: 298 AYVIRGGFD-GNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPA 356

Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
            +AL LF RM    L+P+ ITF+ VL+AC+HAGL+D G +YFN+M   Y I P L+H+  
Sbjct: 357 REALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAA 416

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537
           + D LGR G  +EA   +  M++KP A++W++LL AC+VH    L E VAK + +LEP +
Sbjct: 417 LADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRS 476

Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQS 597
            G++++LSN Y+ +GRW++ A +R  +  KGM+K P CS IEV +  H F+  DK HP  
Sbjct: 477 MGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHPWY 536

Query: 598 KHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTT 657
           + I + L+     + + G+VP+T +V  D++EE K   L  HSEKLAI +G+IST PGTT
Sbjct: 537 ERIIDALNVFSEQMVRQGYVPNTDDVFQDIEEEQKNSVLCGHSEKLAIVFGIISTPPGTT 596

Query: 658 IRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           IR++KNLRVC +CH+ TK ISKI  REI+ RD NRFHHFKDG CSC D+W
Sbjct: 597 IRVMKNLRVCVDCHTVTKFISKIVGREIVMRDANRFHHFKDGICSCGDFW 646



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 195/379 (51%), Gaps = 15/379 (3%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEI-CAV------SPFGDLSYALL-----VFETIREPNQV 96
           +H+  +++G    +FA + L+ + C +      SP  D S  +L     VF+ + E + V
Sbjct: 80  LHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVV 139

Query: 97  IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHV 156
            WN ++ G + S     A+     M   G  P+++T   +L   A+ + +  G ++H   
Sbjct: 140 SWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFA 199

Query: 157 LKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDAR 216
            + G   D FV +SLI+MYA     + +  VF+   +RDA+ + +++ G A  G +D+A 
Sbjct: 200 TRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEAL 259

Query: 217 QLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALID 276
            LF  M        P   T  +++ AC ++ SL LG  + + +   G   N+ ++++LID
Sbjct: 260 GLFRRM--LHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLID 317

Query: 277 MYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVT 336
           MY KCG++  AR +F+ I+  D++SW  MI G+      +EAL+LF +M   N++PN +T
Sbjct: 318 MYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHIT 377

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
           FL+VL AC++ G +D G      +  ++  + ++    +L D   + G ++ A     GM
Sbjct: 378 FLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGM 437

Query: 397 GYKTLAS-WNAMISGLAMH 414
             K  AS W+ ++    +H
Sbjct: 438 KIKPTASVWSTLLRACKVH 456



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 152/275 (55%), Gaps = 6/275 (2%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L + ++  +++   ++H    + G H+  F  S LI++ A     D  Y++ VF+ +   
Sbjct: 180 LPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTD--YSVKVFDNLPVR 237

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           + ++WN+++ G + + S   A+  + RM+ SG  P   TF  ++ +C  ++++  GKQ+H
Sbjct: 238 DAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLH 297

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
           A+V++ G + + F+ +SLI+MY + G +  AR +F++    D VS+TA+I G+A  G   
Sbjct: 298 AYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAR 357

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVTN 272
           +A  LFD M +   N  PN  T + VL+AC+H G ++ G  +  S+ + +G+  +L    
Sbjct: 358 EALVLFDRMEL--GNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHA 415

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVIS-WNVMI 306
           AL D   + G L +A +    ++ +   S W+ ++
Sbjct: 416 ALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLL 450


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 248/577 (42%), Positives = 361/577 (62%), Gaps = 5/577 (0%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           +  IL  C    AI EG+++H H++K       ++ T LI +Y +   L  AR +F++  
Sbjct: 93  YDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMP 152

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
            ++ VS+TA+I+ Y+ RG+  +A  LF EM +R +   PN  T  T+L++C      E G
Sbjct: 153 QKNVVSWTAMISAYSQRGFAFEALNLFVEM-LRSDT-EPNHFTFATILTSCYGSLGFETG 210

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
             + S+       S++ V ++L+DMY+K G +  A  +F  + +RDV++   +I GY   
Sbjct: 211 RQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQM 270

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
              +EAL LFRQ+    +  N VT+ SVL A + L AL+ GK +H+++ ++ Q  + V L
Sbjct: 271 GLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQ-YSYVVL 329

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG- 431
             SLIDMY+KCGN+  A ++FD M  +T  SWNAM+ G + HG A + L LF  M  E  
Sbjct: 330 LNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENK 389

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK-ISPKLQHYGCMVDLLGRAGLFDE 490
           ++PD IT++ VLS C+H  L D+G + F  M+     I P + HYGC+VDLLGRAG  +E
Sbjct: 390 VKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEE 449

Query: 491 AEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAG 550
           A   +K M   P AAIW SLLG+CRVH  +E+G  V + LLELEPEN G YV+LSN+YA 
Sbjct: 450 AFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYAS 509

Query: 551 AGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDAL 610
           AG+W+D+  IR  + +K + K PG S +E+  +VH F   D  HP+ + + + + E+   
Sbjct: 510 AGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVAKKVKELSIK 569

Query: 611 LEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNC 670
            ++ G+VPD S VLYD+DEE KE  L  HSEKLA+A+GLI+T  GTTIR++KNLR+C +C
Sbjct: 570 FKEDGYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDC 629

Query: 671 HSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           HS  K +S+++ R +I RD+NRFH+   G CSC DYW
Sbjct: 630 HSFAKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 666



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 124/417 (29%), Positives = 221/417 (52%), Gaps = 14/417 (3%)

Query: 35  ALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEIC-AVSPFGDLSYALLVFETI 90
            +L++C + + I++   VH+ +IKT    + +  ++LI +       GD   A  +F+ +
Sbjct: 95  TILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGD---AREMFDEM 151

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            + N V W  +I  +S       A+  +V M+ S   PN +TF  IL SC        G+
Sbjct: 152 PQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGR 211

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           QIH+  +K   ES  FV +SL++MYA++G +  A  VF+    RD V+ TA+I+GYA  G
Sbjct: 212 QIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMG 271

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
             ++A +LF ++ I  E    N  T  +VL+A + + +L  G  V S +   G  S + +
Sbjct: 272 LDEEALKLFRQLQI--EGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVL 329

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN- 329
            N+LIDMYSKCG++  AR +F+S+ +R  ISWN M+ GY+     +E L LF+ M + N 
Sbjct: 330 LNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENK 389

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN-NVSLWTSLIDMYAKCGNIKA 388
           ++P+ +T+L+VL  C++    D+G  I   +      +  ++  +  ++D+  + G ++ 
Sbjct: 390 VKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEE 449

Query: 389 AEQVFDGMGY-KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
           A      M +  T A W +++    +H   +  + +  +++   L+P++     +LS
Sbjct: 450 AFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLL--ELEPENAGNYVILS 504



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 78/154 (50%), Gaps = 5/154 (3%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L  LS    + + KQVHS ++++G ++    L+ LI++   S  G++ YA  +F+++ E 
Sbjct: 299 LTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDM--YSKCGNVCYARRIFDSMPER 356

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQI 152
             + WN ++ G+S        ++ +  M     V P++ T+  +L  C+       G +I
Sbjct: 357 TCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEI 416

Query: 153 HAHVL--KLGLESDPFVHTSLINMYAQNGELESA 184
             +++  K G+E D   +  ++++  + G +E A
Sbjct: 417 FYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEA 450


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 252/668 (37%), Positives = 385/668 (57%), Gaps = 44/668 (6%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRG---HSLSSSPVVAIKFYVRMILSGFVPNTYTFP 134
           GD + A  +F+ I +P+    + +I     H LS+    AIK Y  +   G  P+   F 
Sbjct: 112 GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNE---AIKIYSSLQERGIKPDMPVFL 168

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
              K+CA        K++H    + G+ SD FV  +LI+ Y +   +E AR VF+   +R
Sbjct: 169 AAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVR 228

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
           D VS+T+L + Y   G+      +F EM        PN  TV ++L ACA +  L+ G  
Sbjct: 229 DVVSWTSLSSCYVKCGFPRKGMDVFREMGW--SGVKPNPMTVSSILPACAELKDLKSGKE 286

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           +      HG+  NL V +AL+ +Y+KC  + +AR +F+ +  RDV+SWN ++  Y    +
Sbjct: 287 IHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKE 346

Query: 315 YK-----------------------------------EALMLFRQMLQSNIEPNDVTFLS 339
           Y+                                   EA+ +FR+M +   +PN++T  S
Sbjct: 347 YEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISS 406

Query: 340 VLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK 399
           +LPAC++   L +GK IH Y+ + H K+ +++  T+L+ MYAKCG++  +  VFD M  K
Sbjct: 407 ILPACSFSENLRMGKEIHCYVFR-HWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRK 465

Query: 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF 459
            + +WN MI   AMHG   +AL LF +M+   +QP+ +TF GVLS C+H+ L++ G Q F
Sbjct: 466 DVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIF 525

Query: 460 NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
           N+M +D+ + P   HY C+VD+  RAG  +EA   ++ M M+P A+ W +LL ACRV+  
Sbjct: 526 NSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKN 585

Query: 520 LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIE 579
           +EL +  AK L E+EP NPG YV L N+   A  W + + +R  + ++G+ K PGCS ++
Sbjct: 586 VELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQ 645

Query: 580 VGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHH 639
           VG+ VH F+VGDK + +S  IY  LDE+   ++ +G+ PDT  VL D+D+E K  +L +H
Sbjct: 646 VGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCNH 705

Query: 640 SEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDG 699
           SEKLA+A+G+++    +TIR+ KNLR+CG+CH+A K +SK+    I+ RD  RFHHFK+G
Sbjct: 706 SEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNG 765

Query: 700 NCSCNDYW 707
           NCSC D W
Sbjct: 766 NCSCKDLW 773



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 181/383 (47%), Gaps = 40/383 (10%)

Query: 171 LINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV 230
           LI +    G+   AR +F+     D  + + LI+   + G  ++A +++  +  +E    
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSL--QERGIK 161

Query: 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDL 290
           P+    +    ACA  G       V       G+ S++ V NALI  Y KC  +  AR +
Sbjct: 162 PDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRV 221

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350
           F+ +  RDV+SW  +   Y      ++ + +FR+M  S ++PN +T  S+LPACA L  L
Sbjct: 222 FDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDL 281

Query: 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL--------- 401
             GK IH +  + H  + N+ + ++L+ +YAKC +++ A  VFD M ++ +         
Sbjct: 282 KSGKEIHGFAVR-HGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTA 340

Query: 402 --------------------------ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
                                     A+WNA+I G   +G++++A+ +F +M   G +P+
Sbjct: 341 YFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPN 400

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
           +IT   +L AC+ +  L +G++    + + +K+   L     ++ +  + G  + +  + 
Sbjct: 401 EITISSILPACSFSENLRMGKEIHCYVFRHWKVG-DLTSTTALLYMYAKCGDLNLSRNVF 459

Query: 496 KTMEMKPDAAIWTSLLGACRVHG 518
             M  K D   W +++ A  +HG
Sbjct: 460 DMMRRK-DVVAWNTMIIANAMHG 481



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 146/343 (42%), Gaps = 26/343 (7%)

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
           H+   LI +    GD  +AR LF++I + D  + + +I   T      EA+ ++  + + 
Sbjct: 99  HLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQER 158

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            I+P+   FL+   ACA  G     K +H    +    +++V +  +LI  Y KC  ++ 
Sbjct: 159 GIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGV-MSDVFVGNALIHAYGKCKCVEG 217

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A +VFD +  + + SW ++ S     G   K + +F  M   G++P+ +T   +L AC  
Sbjct: 218 ARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAE 277

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
              L  G++     ++ + +   L     +V L  +     EA  +   M  + D   W 
Sbjct: 278 LKDLKSGKEIHGFAVR-HGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHR-DVVSWN 335

Query: 509 SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA----GRWDDVATIRTRL 564
            +L A   +   E G S+    L++  +   A     N   G     GR ++   +  ++
Sbjct: 336 GVLTAYFKNKEYEKGFSL---FLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKM 392

Query: 565 NDKGMKK--------VPGCS---SIEVGSVVHEFL-----VGD 591
              G K         +P CS   ++ +G  +H ++     VGD
Sbjct: 393 QKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGD 435



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 106/218 (48%), Gaps = 21/218 (9%)

Query: 35  ALLSKCTNMQNI---KQVHSQII---KTGLHNTQFALSKLIEICAVSPFGDLSYALLVFE 88
           ++L  C+  +N+   K++H  +    K G   +  AL  +   C     GDL+ +  VF+
Sbjct: 406 SILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKC-----GDLNLSRNVFD 460

Query: 89  TIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE 148
            +R  + V WN +I  +++  +   A+  + +M+LS   PN+ TF  +L  C+    + E
Sbjct: 461 MMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEE 520

Query: 149 GKQIHAHVLKLGL-ESDPFVHTSLINMYAQNGEL-ESARLVFNKSSLRDAVSYTALITGY 206
           G QI   + +  L E D   ++ ++++Y++ G L E+ + +        A ++ AL+   
Sbjct: 521 GVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLA-- 578

Query: 207 ASRGYLD------DARQLFDEMPIREENFVPNESTVVT 238
           A R Y +       A++LF+  P    N+V   + +VT
Sbjct: 579 ACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVT 616


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 267/770 (34%), Positives = 414/770 (53%), Gaps = 114/770 (14%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN------------ 94
           + VH+ +I +G       L++LI+I + S    L+YA  +F+ I +P+            
Sbjct: 33  RPVHAHMIASGFQPRGHILNRLIDIYSKS--SKLNYARYLFDEIPQPDIVARTTLIAAYS 90

Query: 95  ---------------------QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTF 133
                                 V +N +I  +S +     AI+ +  M    F P+ YTF
Sbjct: 91  AAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTF 150

Query: 134 PFILKSCAKISAISE-GKQIHAHVLKLGL------------------------------- 161
             +L + A ++   +  +Q+H  V+K G                                
Sbjct: 151 TSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAE 210

Query: 162 ---------ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
                      D    T++I  Y +N +L++A+   N +S +  V++ A+I+GYA RG  
Sbjct: 211 ARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLY 270

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN----WVCSLIEGHGLGSNL 268
            +A ++F +M + +     +E T  +V+S CA+ G   LG     +    +        +
Sbjct: 271 LEAFEMFRKMIMSKIQL--DEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAM 328

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
            V NALI  Y KCG +  A+++F  + +RD++SWN+++ GY +     EA   F +M + 
Sbjct: 329 PVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEK 388

Query: 329 NI-------------------------------EPNDVTFLSVLPACAYLGALDLGKWIH 357
           NI                               EP D  F   + +C+ LG+L  G+ +H
Sbjct: 389 NILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLH 448

Query: 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA 417
           A + + +   +++S   +LI MYA+CG + AA  +F  M      SWNAMI+ L  HG+ 
Sbjct: 449 AQVVR-YGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQG 507

Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
            +A+ LF  M+ EG+ PD I+F+ V+SAC+HAGL+  GR+YF++M   Y ++P  +HY  
Sbjct: 508 TQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYAR 567

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537
           ++DLL RAG F EA+ ++++M  +P A IW +LL  CR+HG ++LG   A+ L EL+P++
Sbjct: 568 IIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQH 627

Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQS 597
            G YVLLSNMYA AG+W+D+A +R  + D+G+KK PGCS IEV + VH FLVGD  HP+ 
Sbjct: 628 DGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDANHPEV 687

Query: 598 KHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTT 657
           + IY  L+++   + K G+VPDT  VL+D++ + KE  LS HSEKLA+AYG +    G T
Sbjct: 688 RQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESDLKEHELSTHSEKLAVAYGFMKLPHGAT 747

Query: 658 IRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +R+ KNLR+CG+CH+A K +SK+  REI+ RD  RFHHF+DG CSC DYW
Sbjct: 748 VRVFKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 797



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 140/506 (27%), Positives = 216/506 (42%), Gaps = 116/506 (22%)

Query: 136 ILKSCAKISAISE--GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL 193
           +L+ C   S IS    + +HAH++  G +    +   LI++Y+++ +L  AR +F++   
Sbjct: 17  LLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQ 76

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPI----------------------------- 224
            D V+ T LI  Y++ G L  +R++F + P+                             
Sbjct: 77  PDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFC 136

Query: 225 --REENFVPNESTVVTVLSACAHMGSLE--LGNWVCSLIEGHGLGSNLHVTNALIDMYSK 280
             + +NF P+  T  +VL A A +   E       C++++  G G    V NALI  Y K
Sbjct: 137 DMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKS-GTGFVTSVLNALISSYVK 195

Query: 281 CGD---------LVKARDLFESIEKRDVIS------------------------------ 301
           C           + +AR LF+ +  RD +S                              
Sbjct: 196 CAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGV 255

Query: 302 -WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
            WN MI GY H   Y EA  +FR+M+ S I+ ++ TF SV+  CA  G   LGK +HAY 
Sbjct: 256 AWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYF 315

Query: 361 DK---NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN------------ 405
            K   N      + +  +LI  Y KCG +  A+++F+ M  + L SWN            
Sbjct: 316 LKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCM 375

Query: 406 -------------------AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
                               MISGLA  G A++AL  F+RM  +G +P D  F G + +C
Sbjct: 376 DEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISC 435

Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
           +  G L  GRQ  +A +  Y     L     ++ +  R G+ D A  L   M    DA  
Sbjct: 436 SVLGSLKHGRQ-LHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPC-VDAIS 493

Query: 507 WTSLLGACRVHGR----LELGESVAK 528
           W +++ A   HG+    +EL E + K
Sbjct: 494 WNAMIAALGQHGQGTQAIELFEEMLK 519



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 134/273 (49%), Gaps = 9/273 (3%)

Query: 23  PPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSY 82
           P   +  N   +    KC  +   +++ +++ +  L +    LS  + +  +        
Sbjct: 324 PDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDE------ 377

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           A   F  + E N + W  +I G +       A+KF+ RM L GF P  Y F   + SC+ 
Sbjct: 378 AKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSV 437

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
           + ++  G+Q+HA V++ G ES      +LI MYA+ G +++A  +F      DA+S+ A+
Sbjct: 438 LGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAM 497

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEG 261
           I      G    A +LF+EM   +E  +P+  + +TV+SAC+H G ++ G  +  S+   
Sbjct: 498 IAALGQHGQGTQAIELFEEM--LKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNV 555

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
           +G+  +      +ID+  + G   +A+++ ES+
Sbjct: 556 YGVNPDEEHYARIIDLLCRAGKFSEAKEVMESM 588


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 262/659 (39%), Positives = 393/659 (59%), Gaps = 5/659 (0%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           +H+   K G     F  S LI+  A S  G +S+A  VF+ I   + V W  ++  +S +
Sbjct: 172 IHACACKLGHDRNAFVGSSLID--AYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSEN 229

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVH 168
             P  A+  + +M ++G  PN +    +LK+   +S+   GK IH   +K   +++P V 
Sbjct: 230 DIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVG 289

Query: 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
            +L++MYA+ G +E AR VF      D + ++ LI+ YA     + A ++F  M     +
Sbjct: 290 GALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRM--MRSS 347

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288
            VPNE ++  VL ACA++  L+LG  + +L+   G  S L V NAL+D+Y+KC ++  + 
Sbjct: 348 VVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSL 407

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
           ++F S+   + +SWN +I GY  +   ++AL +F++M  +++    VTF SVL ACA   
Sbjct: 408 EIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTA 467

Query: 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI 408
           ++     IH+ I+K+    N+  +  SLID YAKCG I+ A +VF+ +    + SWNA+I
Sbjct: 468 SIKHTVQIHSLIEKSTFN-NDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAII 526

Query: 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
           SG A+HG+A  AL LF+RM     +P+D+TFV +LS C   GL++ G   FN+M  D++I
Sbjct: 527 SGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRI 586

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
            P + HY C+V LLGRAG  ++A   +  +   P   +W +LL +C VH  + LG+  A+
Sbjct: 587 KPSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAE 646

Query: 529 HLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFL 588
            +LE+EP++   YVLLSNMYA AG  D VA +R  + + G+KK  G S +E+   VH F 
Sbjct: 647 KVLEIEPQDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFS 706

Query: 589 VGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYG 648
           VG   HP  + I  ML+ ++    + G+VPD + VL+D+DEE K   L  HSE+LA+AYG
Sbjct: 707 VGSADHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYG 766

Query: 649 LISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           L  T PG  IRI+KNLR C +CH+  K+ISKI  REI+ RD NRFHHF +G CSC DYW
Sbjct: 767 LSMTPPGHPIRIMKNLRSCLDCHTVFKVISKIVQREIVVRDINRFHHFDEGICSCGDYW 825



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 137/493 (27%), Positives = 244/493 (49%), Gaps = 20/493 (4%)

Query: 36  LLSKCT---NMQNIKQVHSQIIKTGLHNTQFALSKLIEICA------VSPFGDLSYALLV 86
           LL +C    + +  + VH+++++ G       +++L   CA       +  G L+ A  +
Sbjct: 53  LLQRCIARGDARAGRAVHARVVQRG------GVAQLDTFCANVLLNLYAKLGPLAAARRL 106

Query: 87  FETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAI 146
           F+ + E N V +  +++G++L      A   + R+   G   N +    ILK    + A 
Sbjct: 107 FDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAP 166

Query: 147 SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGY 206
                IHA   KLG + + FV +SLI+ Y+  G +  AR VF+    +DAV++TA+++ Y
Sbjct: 167 GLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCY 226

Query: 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS 266
           +     +DA   F +M  R     PN   + +VL A   + S  LG  +          +
Sbjct: 227 SENDIPEDALNTFSKM--RMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDT 284

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML 326
             HV  AL+DMY+KCG +  AR +FE I   DVI W+ +I  Y  +   ++A  +F +M+
Sbjct: 285 EPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMM 344

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
           +S++ PN+ +   VL ACA +  LDLG+ IH  + K   + + + +  +L+D+YAKC N+
Sbjct: 345 RSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYE-SELFVGNALMDVYAKCRNM 403

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
           + + ++F  +      SWN +I G    G A+ ALS+F  M    +    +TF  VL AC
Sbjct: 404 ENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRAC 463

Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
            +   +    Q  +++I+    +        ++D   + G   +A  + +++ ++ D   
Sbjct: 464 ANTASIKHTVQ-IHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESI-IQCDVVS 521

Query: 507 WTSLLGACRVHGR 519
           W +++    +HGR
Sbjct: 522 WNAIISGYALHGR 534


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 258/676 (38%), Positives = 401/676 (59%), Gaps = 22/676 (3%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEI---CAVSPFGDLSYALLVFETIREPNQVIWNNIIR 103
           + +H   I  GL    F  + L+++   CA  P  D ++   +F T+   + V WN ++ 
Sbjct: 145 RAIHRHAIHAGLQADLFVSTALLDMYVKCACLP--DAAH---IFATMPARDLVAWNAMLA 199

Query: 104 G--HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGL 161
           G  H       VA    ++M +    PN  T   +L   A+  A+++G  +HA+ ++  L
Sbjct: 200 GYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACL 259

Query: 162 ESDP----------FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
             +            + T+L++MYA+ G L  AR VF+    R+ V+++ALI G+     
Sbjct: 260 HPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSR 319

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
           +  A  LF  M  +   F+ + +++ + L ACA +  L +G  + +L+   G+ ++L   
Sbjct: 320 MTQAFLLFKAMLAQGLCFL-SPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAG 378

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N+L+ MY+K G + +A  LF+ +  +D +S++ ++ GY      +EA ++F++M   N+E
Sbjct: 379 NSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVE 438

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+  T +S++PAC++L AL  G+  H  +       +  S+  +LIDMYAKCG I  + Q
Sbjct: 439 PDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLA-SETSICNALIDMYAKCGRIDLSRQ 497

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VF+ M  + + SWN MI+G  +HG   +A +LF  M   G  PD +TF+ +LSAC+H+GL
Sbjct: 498 VFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGL 557

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           +  G+ +F+ M   Y ++P+++HY CMVDLL R G  DEA   +++M ++ D  +W +LL
Sbjct: 558 VIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALL 617

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
           GACRV+  ++LG+ V++ + EL PE  G +VLLSN+Y+ AGR+D+ A +R     +G KK
Sbjct: 618 GACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKK 677

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
            PGCS IE+   +H F+ GD+ HPQS  IY  LD I   ++K G+ PDTS VL D++EE 
Sbjct: 678 SPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEE 737

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           KE AL  HSEKLAIAYG++S     TI + KNLRVCG+CH+  K IS +  R II RD N
Sbjct: 738 KEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDAN 797

Query: 692 RFHHFKDGNCSCNDYW 707
           RFHHFK+G CSC D+W
Sbjct: 798 RFHHFKNGQCSCGDFW 813



 Score =  234 bits (596), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 148/472 (31%), Positives = 243/472 (51%), Gaps = 25/472 (5%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVA---IKFYVRMILSGFVPNTYTFP 134
           G LS A  +F+ I  P+   +N++IR +S SSSP  A   +  Y RM+     PN YTFP
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYS-SSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
           F LK+C+ ++    G+ IH H +  GL++D FV T+L++MY +   L  A  +F     R
Sbjct: 130 FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
           D V++ A++ GYA  G    A      M ++     PN ST+V +L   A  G+L  G  
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 255 VCSLIEGHGLGSNLH----------VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
           V +      L  N +          +  AL+DMY+KCG L+ AR +F+++  R+ ++W+ 
Sbjct: 250 VHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSA 309

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSN---IEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361
           +IGG+   S   +A +LF+ ML      + P  +   S L ACA L  L +G+ +HA + 
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQLHALLA 367

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421
           K+     +++   SL+ MYAK G I  A  +FD M  K   S++A++SG   +G+A++A 
Sbjct: 368 KSGVH-ADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAF 426

Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481
            +F +M    ++PD  T V ++ AC+H   L  GR    ++I    ++ +      ++D+
Sbjct: 427 LVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASETSICNALIDM 485

Query: 482 LGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL 533
             + G  D +  +   M  + D   W +++    +HG   LG+      LE+
Sbjct: 486 YAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIHG---LGKEATALFLEM 533


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 255/695 (36%), Positives = 397/695 (57%), Gaps = 51/695 (7%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           ++L + C +++  ++V   + K  ++   F +S+  +I      GD   ++ +F+ + E 
Sbjct: 141 VSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKI------GDFKESICLFKIMVEK 194

Query: 94  --------------------NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTF 133
                               + + WN++I G+  +      ++ Y +M+  G   +  T 
Sbjct: 195 GIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATI 254

Query: 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL 193
             +L  CA    +S GK +H+  +K   E       +L++MY++ G+L+ A  VF K   
Sbjct: 255 ISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGE 314

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
           R+ VS+T++I GY   G  D A +L  +M   +E    +     ++L ACA  GSL+ G 
Sbjct: 315 RNVVSWTSMIAGYTRDGRSDGAIRLLQQM--EKEGVKLDVVATTSILHACARSGSLDNGK 372

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTS 313
            V   I+ + + SNL V NAL+DMY+KCG +  A  +F ++  +D+ISWN MIG      
Sbjct: 373 DVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIG------ 426

Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
                           ++P+  T   +LPACA L AL+ GK IH YI +N    ++  + 
Sbjct: 427 ---------------ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYS-SDRHVA 470

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
            +L+D+Y KCG +  A  +FD +  K L SW  MISG  MHG  ++A++ F+ M   G++
Sbjct: 471 NALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIE 530

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
           PD+++F+ +L AC+H+GLL+ G ++F  M  D+ I PKL+HY CMVDLL R G   +A  
Sbjct: 531 PDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYE 590

Query: 494 LLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGR 553
            ++T+ + PDA IW +LL  CR++  +EL E VA+ + ELEPEN G YVLL+N+YA A +
Sbjct: 591 FIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEK 650

Query: 554 WDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDK-VHPQSKHIYEMLDEIDALLE 612
           W++V  +R ++  KG++K PGCS IE+   V+ F+ G+   HP SK I  +L ++   ++
Sbjct: 651 WEEVKRMREKIGKKGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESLLKKMRRKMK 710

Query: 613 KSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHS 672
           + G+ P T   L + DE  KE AL  HSEKLA+A+GL++  P  T+R+ KNLRVCG+CH 
Sbjct: 711 EEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLALPPRKTVRVTKNLRVCGDCHE 770

Query: 673 ATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
             K +SK   REI+ RD NRFHHFK+G CSC  +W
Sbjct: 771 MAKFMSKETRREIVLRDSNRFHHFKNGYCSCRGFW 805



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 124/440 (28%), Positives = 206/440 (46%), Gaps = 77/440 (17%)

Query: 130 TYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN 189
           T T+  +L+ CA   ++++GK++H+ +    +  D  +   L+++YA  G+L+  R VF+
Sbjct: 99  TKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFD 158

Query: 190 -----------------------KSSL----------------------------RDAVS 198
                                  K S+                            RD +S
Sbjct: 159 TMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVIS 218

Query: 199 YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           + ++I+GY S G  +   +++ +M     +   + +T+++VL  CA+ G+L LG  V SL
Sbjct: 219 WNSMISGYVSNGLTERGLEIYKQMMYLGIDV--DLATIISVLVGCANSGTLSLGKAVHSL 276

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
                    ++ +N L+DMYSKCGDL  A  +FE + +R+V+SW  MI GYT       A
Sbjct: 277 AIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGA 336

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
           + L +QM +  ++ + V   S+L ACA  G+LD GK +H YI  N+ + +N+ +  +L+D
Sbjct: 337 IRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNME-SNLFVCNALMD 395

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
           MY KCG++  A  VF  M  K + SWN                     MIGE L+PD  T
Sbjct: 396 MYTKCGSMDGANSVFSTMVVKDIISWNT--------------------MIGE-LKPDSRT 434

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
              +L AC     L+ G++    ++++   S        +VDL  + G+   A  L   +
Sbjct: 435 MACILPACASLSALERGKEIHGYILRN-GYSSDRHVANALVDLYVKCGVLGLARLLFDMI 493

Query: 499 EMKPDAAIWTSLLGACRVHG 518
             K D   WT ++    +HG
Sbjct: 494 PSK-DLVSWTVMISGYGMHG 512



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 110/394 (27%), Positives = 189/394 (47%), Gaps = 45/394 (11%)

Query: 175 YAQNGELESAR--LVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPN 232
           + Q G LE+A   +   + S  +  +Y++++   A    L D +++     I+  N   +
Sbjct: 76  FCQLGNLENAMELVCMCQKSELETKTYSSVLQLCAGSKSLTDGKKVHS--IIKSNNVAVD 133

Query: 233 ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK------ 286
           E   + ++S  A  G L+ G  V   +E      N+++ N ++  Y+K GD  +      
Sbjct: 134 EVLGLKLVSLYATCGDLKEGRRVFDTMEK----KNVYLWNFMVSEYAKIGDFKESICLFK 189

Query: 287 --------------ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
                         A +LF+ +  RDVISWN MI GY      +  L +++QM+   I+ 
Sbjct: 190 IMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDV 249

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAY-IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           +  T +SVL  CA  G L LGK +H+  I    ++  N S   +L+DMY+KCG++  A +
Sbjct: 250 DLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFS--NTLLDMYSKCGDLDGALR 307

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VF+ MG + + SW +MI+G    G++D A+ L  +M  EG++ D +    +L AC  +G 
Sbjct: 308 VFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGS 367

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM------------- 498
           LD G+   +  I+   +   L     ++D+  + G  D A ++  TM             
Sbjct: 368 LDNGKDVHD-YIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIG 426

Query: 499 EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
           E+KPD+     +L AC     LE G+ +  ++L 
Sbjct: 427 ELKPDSRTMACILPACASLSALERGKEIHGYILR 460


>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 572

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 251/565 (44%), Positives = 362/565 (64%), Gaps = 6/565 (1%)

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN--GELESARLVFNKSSLRDAVSYTALI 203
           + E KQ+HAHVLK G+  D F  ++L+   A    G ++ A  +F +     +  Y  +I
Sbjct: 11  MEEFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYNTMI 70

Query: 204 TGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG 263
            G  +   L++A  L+ +M   E    P++ T   VL AC+ +G ++ G  V   +   G
Sbjct: 71  RGNVNDMKLEEALLLYVDMI--ERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMG 128

Query: 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFR 323
           L  ++ V N+LI+MY KCG++  A D+F  ++++ V SW+ +IG +     + E LML  
Sbjct: 129 LEGDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLG 188

Query: 324 QML-QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
           +M  +      + T ++VL AC +LG+ DLGK IH  + +N  +LN V + TSLIDMY K
Sbjct: 189 KMSSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELN-VVVKTSLIDMYVK 247

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
            G ++   +VF  M  K   S+  MISGLA+HG+  +AL +FS MI EGL PDD+ +VGV
Sbjct: 248 SGCLEKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGV 307

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
            SAC+HAGL++ G Q F +M  ++KI P +QHYGCMVDLLGR G+  EA  L+K+M +KP
Sbjct: 308 FSACSHAGLVEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGMLKEAYELIKSMSIKP 367

Query: 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562
           +  IW SLL AC+VH  LE+G+  A++L  L   N G Y++L+NMYA A +WDDVA IRT
Sbjct: 368 NDVIWRSLLSACKVHHNLEIGKIAAENLFMLNQNNSGDYLVLANMYAKAQKWDDVAKIRT 427

Query: 563 RLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSE 622
           +L ++ + + PG S IE    V++F+  DK  PQ   IYEM+ +++  L+  G++PDTS+
Sbjct: 428 KLAERNLVQTPGFSLIEAKRKVYKFVSQDKSIPQWNIIYEMIHQMEWQLKFEGYIPDTSQ 487

Query: 623 VLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFN 682
           VL D+D+E K+  L  HS+KLAIA+GLI T  G+ +RI +NLR+C +CH+ TK IS I+ 
Sbjct: 488 VLLDVDDEEKKERLKFHSQKLAIAFGLIHTSEGSPLRITRNLRMCSDCHTYTKYISMIYE 547

Query: 683 REIIARDRNRFHHFKDGNCSCNDYW 707
           REI  RDR RFHHFK+G+CSC DYW
Sbjct: 548 REITVRDRLRFHHFKNGSCSCKDYW 572



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 206/375 (54%), Gaps = 2/375 (0%)

Query: 41  TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNN 100
            +M+  KQVH+ ++K G+    F +S L+  CA++ +G + YA  +F  I EP+   +N 
Sbjct: 9   NHMEEFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYNT 68

Query: 101 IIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG 160
           +IRG+        A+  YV MI  G  P+ +T+PF+LK+C+ +  + EG Q+H HV K+G
Sbjct: 69  MIRGNVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMG 128

Query: 161 LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD 220
           LE D  V  SLINMY + GE+++A  VFN    +   S++A+I  +A     ++   L  
Sbjct: 129 LEGDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLG 188

Query: 221 EMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK 280
           +M   E      EST+V VLSAC H+GS +LG  +  ++  +    N+ V  +LIDMY K
Sbjct: 189 KMS-SEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMYVK 247

Query: 281 CGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSV 340
            G L K   +F+++ +++  S+ VMI G       KEAL +F +M++  + P+DV ++ V
Sbjct: 248 SGCLEKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGV 307

Query: 341 LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK- 399
             AC++ G ++ G      +   H+    V  +  ++D+  + G +K A ++   M  K 
Sbjct: 308 FSACSHAGLVEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGMLKEAYELIKSMSIKP 367

Query: 400 TLASWNAMISGLAMH 414
               W +++S   +H
Sbjct: 368 NDVIWRSLLSACKVH 382


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 271/741 (36%), Positives = 408/741 (55%), Gaps = 74/741 (9%)

Query: 33  SLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +L    +  N   +K++H +II+T  +   F  + LI        GDL  A  VF+ I +
Sbjct: 11  ALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLIN--TYGKLGDLKNARNVFDHIPQ 68

Query: 93  PNQVIWNNIIRGHS-----------LSSSP---VVA-----------------IKFYVRM 121
           PN   WN ++  +S             S P   VV+                 ++ Y  M
Sbjct: 69  PNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMM 128

Query: 122 ILSGFVP-NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           +  G V  N  TF  +L   +    +  G+QIH  + K G +S  FV + L++MYA+ G 
Sbjct: 129 LKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGF 188

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE-------------- 226
           +  A  +F +   ++ V Y  +ITG     ++ +A QLFD MP ++              
Sbjct: 189 INDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQN 248

Query: 227 ---------------ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
                          E F  ++ T  +VL+AC    +L+ G  + + I       N+ V 
Sbjct: 249 GLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVG 308

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           +AL+DMY KC ++  A  +F  +  ++VISW  M+ GY      +EA+ +F  M ++ I 
Sbjct: 309 SALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIH 368

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNN-----VSLWTSLIDMYAKCGNI 386
           P+D T  SV+ +CA L +L+ G   H       Q L +     V++  +LI +Y KCG++
Sbjct: 369 PDDFTLGSVISSCANLASLEEGAQFHG------QALASGLICFVTVSNALITLYGKCGSL 422

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
           + A Q+F  M  +   SW A++SG A  GKA++ +SLF  M+  G+ PD +TFVGVLSAC
Sbjct: 423 EHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSAC 482

Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
           + AGL++ G  YF  M+++++I+P   HY CM+DLL RAG  +EA+  +  M   PDA  
Sbjct: 483 SRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIG 542

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
           W +LL +CR++G LE+G+  A+ L +LEP+NP +Y+LLS++YA  G+WDDVA +R  + +
Sbjct: 543 WATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMRE 602

Query: 567 KGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYD 626
            G+KK PG S I+  + VH F   D+  P S  IY  L+ +   + + G+VPD S VL+D
Sbjct: 603 MGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMSFVLHD 662

Query: 627 MDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREII 686
           +++  K   L+HHSEKLAIA+GL+    G  IR+VKNLRVCG+CH+ATK IS+I  REI+
Sbjct: 663 VEKSEKIKMLNHHSEKLAIAFGLLFIPDGLQIRVVKNLRVCGDCHNATKYISRITQREIL 722

Query: 687 ARDRNRFHHFKDGNCSCNDYW 707
            RD  RFH FKDG CSC D+W
Sbjct: 723 VRDAVRFHLFKDGVCSCGDFW 743


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 253/614 (41%), Positives = 364/614 (59%), Gaps = 37/614 (6%)

Query: 96  VIWNNIIRGHSLSSSPVVAIKFYVRMILSG--FVPNTYTFPFILKSCAKISAISEGKQIH 153
           V +N +IR  + SS    A+  +  M   G    P+ YT+P  LKSC+    +  G QIH
Sbjct: 87  VCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSASKDLLLGLQIH 146

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
           + V KL L+ + +V  S I+MY++ G  E A  VF+    RD VS+ A+I G+A  G  D
Sbjct: 147 SAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGLFD 206

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
            A ++F +  + + + +P+  T+  +L A        +GN                    
Sbjct: 207 RAIEVFKQFVVLQGS-MPDAGTMAGILPA--------MGN-------------------- 237

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
                +K  D+   R +F++++ +++ISWN M+  Y +   + +A+ LF  M +  +EP+
Sbjct: 238 -----AKPDDIRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVELFMLMEKDEVEPD 292

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
            +T  +VLP C  L A  +GK IH  I K      N+ L  +L+DMYA CG +K A ++F
Sbjct: 293 SITLATVLPPCGELSAFSVGKRIHEII-KRKNMCPNLLLENALMDMYASCGCLKDAREIF 351

Query: 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLD 453
           D M  + + SW ++IS    HG   +A+ LF +M+G+GL+PD I FV VL+AC+HAGLL 
Sbjct: 352 DLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLA 411

Query: 454 IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
            G+ YF++M   Y I PK +HY CMVDLLGRAG  +EA   + TM ++P+  +W +LL A
Sbjct: 412 DGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLIEPNERVWGALLQA 471

Query: 514 CRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVP 573
           CR+H  +++G   A +L  L PE  G YVLLSNMYA AGRW DV ++R+ + +KG+KK P
Sbjct: 472 CRIHSNMDIGLVAADNLFSLVPEQTGYYVLLSNMYARAGRWADVTSVRSVMVNKGIKKFP 531

Query: 574 GCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKE 633
           G S +E+G  VH F +GD+ HPQS+ IY  LDE+   +   G+ P+    L+D++EE KE
Sbjct: 532 GTSIVELGDQVHTFHIGDRCHPQSEMIYHKLDELLGKIRGMGYNPEVEATLHDVEEEDKE 591

Query: 634 GALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRF 693
             LS HSEKLAIA+ L++T PGT IR+  NLR C +CH A KLIS I  REI+ +D NR 
Sbjct: 592 DHLSVHSEKLAIAFLLLNTSPGTIIRVTMNLRTCSDCHLAAKLISIITCREIVLKDTNRI 651

Query: 694 HHFKDGNCSCNDYW 707
           HH   G CSC DYW
Sbjct: 652 HHIVQGVCSCGDYW 665



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 164/347 (47%), Gaps = 31/347 (8%)

Query: 235 TVVTVLSAC---AHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLF 291
           +++ +L+AC   AH+ SL   +    ++      S  H    LI  Y+ C  L  A  + 
Sbjct: 14  SLLRLLAACRAPAHLPSLRAAHARLLVLLHPSHPSAAHANVKLIQAYAACSALPLAHTVL 73

Query: 292 ESIE-----KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE--PNDVTFLSVLPAC 344
           ES       +   + +NV+I   T +S +++AL+LF  M        P+  T+   L +C
Sbjct: 74  ESSSPDGRSRTTTVCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSC 133

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
           +    L LG  IH+ + K      NV +  S I MY++CG  + A +VFDGM ++ + SW
Sbjct: 134 SASKDLLLGLQIHSAVAKLRLD-RNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSW 192

Query: 405 NAMISGLAMHGKADKALSLFSRMIG-EGLQPDDITFVGVLSACNHAGLLDIG--RQYFNA 461
           NAMI+G A  G  D+A+ +F + +  +G  PD  T  G+L A  +A   DI   R+ F+ 
Sbjct: 193 NAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPAMGNAKPDDIRFVRRVFDN 252

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM---EMKPDAAIWTSLLGACRVHG 518
           M   +K   +L  +  M+ +        +A  L   M   E++PD+    ++L  C   G
Sbjct: 253 M--QFK---ELISWNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPC---G 304

Query: 519 RLELGESVAKHLLE-LEPENPGAYVLLSN----MYAGAGRWDDVATI 560
            L    SV K + E ++ +N    +LL N    MYA  G   D   I
Sbjct: 305 ELS-AFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREI 350



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 113/217 (52%), Gaps = 3/217 (1%)

Query: 79  DLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILK 138
           D+ +   VF+ ++    + WN ++  ++ +   V A++ ++ M      P++ T   +L 
Sbjct: 242 DIRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLP 301

Query: 139 SCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVS 198
            C ++SA S GK+IH  + +  +  +  +  +L++MYA  G L+ AR +F+  S RD +S
Sbjct: 302 PCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVIS 361

Query: 199 YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCS 257
           +T++I+ Y   G+  +A  LF++M    +   P+    V VL+AC+H G L  G ++  S
Sbjct: 362 WTSIISAYGKHGHGREAVDLFEKM--LGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDS 419

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
           +   + +         ++D+  + G + +A D   ++
Sbjct: 420 MTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTM 456


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 264/667 (39%), Positives = 408/667 (61%), Gaps = 12/667 (1%)

Query: 47   KQVHSQIIKTGLHNTQFALSK-LIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
            ++VH+ +I+TGL++ + A+   L+ + A S  G ++ A  VFE + E + V WN++I G 
Sbjct: 879  REVHAHVIRTGLNDNKVAIGNGLVNMYAKS--GAIADACSVFELMVEKDSVSWNSLISGL 936

Query: 106  SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
              +     A + ++RM  +G +P+ +T    L SCA +  I  G+QIH   LKLGL++D 
Sbjct: 937  DQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDV 996

Query: 166  FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA-SRGYLDDARQLFDEMPI 224
             V  +L+ +YA+ G       VF+     D VS+ ++I   + S   +  A + F EM  
Sbjct: 997  SVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEM-- 1054

Query: 225  REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
                +  +  T + +LSA + +   E+ + + +L+  + L  +  + NAL+  Y KCG++
Sbjct: 1055 MRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEM 1114

Query: 285  VKARDLFESI-EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
             +   +F  + E RD +SWN MI GY H     +A+ L   M+Q     +  TF +VL A
Sbjct: 1115 NECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSA 1174

Query: 344  CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
            CA +  L+ G  +HA   +   + ++V + ++L+DMY+KCG I  A + F+ M  + + S
Sbjct: 1175 CASVATLERGMEVHACGIRACME-SDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYS 1233

Query: 404  WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT-FVGVLSACNHAGLLDIGRQYFNAM 462
            WN+MISG A HG  +KAL LF+RM+ +G  PD +   +GVLSAC+H G ++ G ++F +M
Sbjct: 1234 WNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLSACSHVGFVEEGFEHFKSM 1293

Query: 463  IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC-RVHGR-L 520
             + Y++SP+++H+ CMVDLLGRAG  DE    + +M MKP+  IW ++LGAC R +GR  
Sbjct: 1294 SEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNT 1353

Query: 521  ELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEV 580
            ELG   A+ LLELEP+N   YVLL+NMYA   +W+DVA  R  + +  +KK  GCS + +
Sbjct: 1354 ELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARXAMKEAAVKKEAGCSWVTM 1413

Query: 581  GSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHS 640
               VH F+ GDK+HP+   IY+ L E++  +  +G++P T   L+D++ E KE  LS+HS
Sbjct: 1414 KDGVHVFVAGDKLHPEKDXIYDKLRELNRKMRDAGYIPQTKYALFDLELENKEELLSYHS 1473

Query: 641  EKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGN 700
            EK+A+A+ +++ +    IRI+KNLRVCG+CHSA   ISKI  R+I+ RD NRFHHF+DG 
Sbjct: 1474 EKIAVAF-VLTRQSALPIRIMKNLRVCGDCHSAFGYISKIVGRQIVLRDSNRFHHFEDGK 1532

Query: 701  CSCNDYW 707
            CSC DYW
Sbjct: 1533 CSCGDYW 1539



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 139/489 (28%), Positives = 237/489 (48%), Gaps = 32/489 (6%)

Query: 44   QNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIR 103
            +  +++H Q IK G     F  + LI I      GDL  A  +F+ +   N V W  +I 
Sbjct: 561  EEARELHLQSIKYGFVGNLFLSNTLINIYV--RIGDLGSAQKLFDEMSNRNLVTWACLIS 618

Query: 104  GHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKI--SAISEGKQIHAHVLKLGL 161
            G++ +  P  A   +  M+ +GF+PN Y F   L++C +   S    G QIH  + K   
Sbjct: 619  GYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRY 678

Query: 162  ESDPFVHTSLINMYAQN-GELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD 220
             SD  V   LI+MY         AR VF++  +R+++S+ ++I+ Y+ RG    A  LF 
Sbjct: 679  GSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFS 738

Query: 221  EMPIREE----NFVPNESTVVTVLSACAHMGSLELGNWVCSL------IEGHGLGSNLHV 270
             M  ++E    +F PNE T  ++++A     S++ G  +C L      +E  G   +L+V
Sbjct: 739  SM--QKEGLGFSFKPNEYTFGSLITAAC--SSVDFG--LCVLEQMLARVEKSGFLQDLYV 792

Query: 271  TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
             +AL+  +++ G    A+++FE +  R+V+S N ++ G       + A  +F +M +  +
Sbjct: 793  GSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEM-KDLV 851

Query: 331  EPNDVTFLSVLPACAYLGALDLGKW----IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
              N  +++ +L A +    L+ G+     +HA++ +     N V++   L++MYAK G I
Sbjct: 852  GINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAI 911

Query: 387  KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
              A  VF+ M  K   SWN++ISGL  +  ++ A   F RM   G  P + T +  LS+C
Sbjct: 912  ADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSC 971

Query: 447  NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP--DA 504
               G + +G Q     ++   +   +     ++ L    G F E    LK   + P  D 
Sbjct: 972  ASLGWIMLGEQIHCDGLK-LGLDTDVSVSNALLALYAETGCFTEC---LKVFSLMPEYDQ 1027

Query: 505  AIWTSLLGA 513
              W S++GA
Sbjct: 1028 VSWNSVIGA 1036



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 205/421 (48%), Gaps = 27/421 (6%)

Query: 148 EGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA 207
           E +++H   +K G   + F+  +LIN+Y + G+L SA+ +F++ S R+ V++  LI+GY 
Sbjct: 562 EARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYT 621

Query: 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG--SLELGNWVCSLIEGHGLG 265
             G  D+A   F +M      F+PN     + L AC   G    +LG  +  LI     G
Sbjct: 622 QNGKPDEACARFRDMV--RAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYG 679

Query: 266 SNLHVTNALIDMYSKCGDLVK-ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
           S++ V N LI MY  C D    AR +F+ I  R+ ISWN +I  Y+   D   A  LF  
Sbjct: 680 SDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSS 739

Query: 325 M----LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK---LNNVSLWTSLI 377
           M    L  + +PN+ TF S++ A     ++D G  +   +    +K   L ++ + ++L+
Sbjct: 740 MQKEGLGFSFKPNEYTFGSLITAAC--SSVDFGLCVLEQMLARVEKSGFLQDLYVGSALV 797

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG-EGLQPDD 436
             +A+ G    A+ +F+ MG + + S N ++ GL    + + A  +F  M    G+  D 
Sbjct: 798 SGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSD- 856

Query: 437 ITFVGVLSACNHAGLLD----IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
            ++V +LSA +   +L+     GR+    +I+      K+     +V++  ++G   +A 
Sbjct: 857 -SYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADAC 915

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN--PGAYVLLSNMYAG 550
           ++ + M ++ D+  W SL+     +   E  E  A+  L +      P  + L+S + + 
Sbjct: 916 SVFELM-VEKDSVSWNSLISGLDQN---ECSEDAAESFLRMRRTGSMPSNFTLISTLSSC 971

Query: 551 A 551
           A
Sbjct: 972 A 972


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 258/676 (38%), Positives = 401/676 (59%), Gaps = 22/676 (3%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEI---CAVSPFGDLSYALLVFETIREPNQVIWNNIIR 103
           + +H   I  GL    F  + L+++   CA  P  D ++   +F T+   + V WN ++ 
Sbjct: 30  RAIHRHAIHAGLQADLFVSTALLDMYVKCACLP--DAAH---IFATMPARDLVAWNAMLA 84

Query: 104 G--HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGL 161
           G  H       VA    ++M +    PN  T   +L   A+  A+++G  +HA+ ++  L
Sbjct: 85  GYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACL 144

Query: 162 ESDP----------FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
             +            + T+L++MYA+ G L  AR VF+    R+ V+++ALI G+     
Sbjct: 145 HPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSR 204

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
           +  A  LF  M  +   F+ + +++ + L ACA +  L +G  + +L+   G+ ++L   
Sbjct: 205 MTQAFLLFKAMLAQGLCFL-SPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAG 263

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N+L+ MY+K G + +A  LF+ +  +D +S++ ++ GY      +EA ++F++M   N+E
Sbjct: 264 NSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVE 323

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+  T +S++PAC++L AL  G+  H  +       +  S+  +LIDMYAKCG I  + Q
Sbjct: 324 PDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLA-SETSICNALIDMYAKCGRIDLSRQ 382

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VF+ M  + + SWN MI+G  +HG   +A +LF  M   G  PD +TF+ +LSAC+H+GL
Sbjct: 383 VFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGL 442

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           +  G+ +F+ M   Y ++P+++HY CMVDLL R G  DEA   +++M ++ D  +W +LL
Sbjct: 443 VIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALL 502

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
           GACRV+  ++LG+ V++ + EL PE  G +VLLSN+Y+ AGR+D+ A +R     +G KK
Sbjct: 503 GACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKK 562

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
            PGCS IE+   +H F+ GD+ HPQS  IY  LD I   ++K G+ PDTS VL D++EE 
Sbjct: 563 SPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEE 622

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           KE AL  HSEKLAIAYG++S     TI + KNLRVCG+CH+  K IS +  R II RD N
Sbjct: 623 KEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDAN 682

Query: 692 RFHHFKDGNCSCNDYW 707
           RFHHFK+G CSC D+W
Sbjct: 683 RFHHFKNGQCSCGDFW 698



 Score =  208 bits (530), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 130/430 (30%), Positives = 218/430 (50%), Gaps = 29/430 (6%)

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           M+     PN YTFPF LK+C+ ++    G+ IH H +  GL++D FV T+L++MY +   
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
           L  A  +F     RD V++ A++ GYA  G    A      M ++     PN ST+V +L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNLH--------------VTNALIDMYSKCGDLVK 286
              A  G+L  G  V      + + + LH              +  AL+DMY+KCG L+ 
Sbjct: 121 PLLAQQGALAQGTSV----HAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLY 176

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN---IEPNDVTFLSVLPA 343
           AR +F+++  R+ ++W+ +IGG+   S   +A +LF+ ML      + P  +   S L A
Sbjct: 177 ARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRA 234

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
           CA L  L +G+ +HA + K+     +++   SL+ MYAK G I  A  +FD M  K   S
Sbjct: 235 CASLDHLRMGEQLHALLAKSGVH-ADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS 293

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
           ++A++SG   +G+A++A  +F +M    ++PD  T V ++ AC+H   L  GR    ++I
Sbjct: 294 YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI 353

Query: 464 QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELG 523
               ++ +      ++D+  + G  D +  +   M  + D   W +++    +HG   LG
Sbjct: 354 IR-GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIHG---LG 408

Query: 524 ESVAKHLLEL 533
           +      LE+
Sbjct: 409 KEATALFLEM 418


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 245/633 (38%), Positives = 370/633 (58%), Gaps = 23/633 (3%)

Query: 96  VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAH 155
           V WN +I           A++    M+  G  P+  TF   L +C+++  ++ G+++HA 
Sbjct: 248 VTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAV 307

Query: 156 VLK-LGLESDPFVHTSLINMYAQNGELESARLVFN--KSSLRDAVSYTALITGYASRGYL 212
           VLK   L ++ FV ++L++MYA N ++ SAR VF+      R    + A+I GYA  G  
Sbjct: 308 VLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMD 367

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           ++A +LF  M   E    P+E+T+  VL ACA          +   +   G+  N  V N
Sbjct: 368 EEALELFSRMEA-EAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQN 426

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML------ 326
           AL+DMY++ G++  AR +F  I+ RDV+SWN +I G        EA  L  +M       
Sbjct: 427 ALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSP 486

Query: 327 ----------QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
                          PN++T +++LP CA L A   GK IH Y  + H   +++++ ++L
Sbjct: 487 SSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVR-HALESDIAVGSAL 545

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG-LQPD 435
           +DMYAKCG + A+  VFD +  + + +WN +I    MHG  D+A++LF  M   G   P+
Sbjct: 546 VDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPN 605

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
           ++TF+  L+AC+H+GL+D G + F+ M +D+ + P    + C+VD+LGRAG  DEA +++
Sbjct: 606 EVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSII 665

Query: 496 KTME-MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554
            +ME  +   + W+SLLGACR+H  +ELGE  A+ L ELEP     YVLL N+Y+ AG W
Sbjct: 666 TSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFELEPGEASHYVLLCNIYSAAGMW 725

Query: 555 DDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKS 614
           D    +R R+  +G+ K PGCS IE+   +H F+ G+  HP S  ++  +D +   + + 
Sbjct: 726 DKSVAVRVRMRRQGVAKEPGCSWIELDGAIHRFMAGESSHPASAEVHAHMDALWERMRRE 785

Query: 615 GFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSAT 674
           G+ PDTS VL+D+DE+ K   L +HSEKLAIA+GL+   PG  IR+ KNLRVC +CH A 
Sbjct: 786 GYAPDTSCVLHDVDEDEKAAMLRYHSEKLAIAFGLLRAPPGAAIRVAKNLRVCNDCHEAA 845

Query: 675 KLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           K +SK+  R+I+ RD  RFHHF+DG+CSC DYW
Sbjct: 846 KFMSKMVGRDIVLRDVRRFHHFRDGSCSCGDYW 878



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 121/407 (29%), Positives = 192/407 (47%), Gaps = 22/407 (5%)

Query: 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGL--ESDPFVHTSLINMYAQNGELESARLVF 188
           +  P  +KS A +      + +HA  L+  L     P V  +L+  YA+ G+L++A  +F
Sbjct: 64  FALPPAIKSAAALRDARAARSLHAAALRRALLHRPSPAVGNALLTAYARCGDLDAALALF 123

Query: 189 NKS--SLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHM 246
             +   LRDAVSY +LI+        + A     +M + E     +  T+V+VL AC+H+
Sbjct: 124 AATATELRDAVSYNSLISALCLFRQWERALDALRDM-LAEGRHDVSSFTLVSVLLACSHL 182

Query: 247 ---GSLELGNWVCSLIEGHGL---GSNLHVTNALIDMYSKCGDLVKARDLFESIEKR--- 297
                  LG    +     G    G      NAL+ MY++ G +  A+ LF +       
Sbjct: 183 PGDDGRRLGREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSP 242

Query: 298 ---DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGK 354
              DV++WN MI          EA+ +   M+   + P+ VTF S LPAC+ L  L LG+
Sbjct: 243 GGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGR 302

Query: 355 WIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM--GYKTLASWNAMISGLA 412
            +HA + K+     N  + ++L+DMYA    + +A +VFD +    + L  WNAMI G A
Sbjct: 303 EMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYA 362

Query: 413 MHGKADKALSLFSRMIGE-GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK 471
             G  ++AL LFSRM  E G  P + T  GVL AC  +     G++  +  +    ++  
Sbjct: 363 QAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGF-AGKEAMHGYVVKRGMAGN 421

Query: 472 LQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
                 ++D+  R G  D A  +   ++ + D   W +L+  C V G
Sbjct: 422 RFVQNALMDMYARLGEMDVARRIFAMIDPR-DVVSWNTLITGCVVQG 467



 Score = 45.8 bits (107), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 4/140 (2%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K++H   ++  L +     S L+++ A    G L+ +  VF+ +   N + WN +I  + 
Sbjct: 524 KEIHGYAVRHALESDIAVGSALVDMYA--KCGCLAASRAVFDRLPRRNVITWNVLIMAYG 581

Query: 107 LSSSPVVAIKFYVRMILSG-FVPNTYTFPFILKSCAKISAISEGKQI-HAHVLKLGLESD 164
           +      A+  +  M   G   PN  TF   L +C+    +  G ++ H      G++  
Sbjct: 582 MHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPT 641

Query: 165 PFVHTSLINMYAQNGELESA 184
           P +H  ++++  + G L+ A
Sbjct: 642 PDLHACVVDVLGRAGRLDEA 661


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 248/676 (36%), Positives = 394/676 (58%), Gaps = 8/676 (1%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIE-ICAVSPFGDLSYALLVFETIRE 92
           L+  ++  ++  ++QVHS +IK G  +T    + L++  C     G    A  +F  I E
Sbjct: 205 LSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLG---LAFQLFNDIPE 261

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V +N ++ G+S       AI  + +M   G+ P  +TF  IL +  ++  I  G+Q+
Sbjct: 262 RDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQV 321

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H  V+K     + FV  +L++ Y+++  +  A  +F +    D +SY  L+T YA  G +
Sbjct: 322 HGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRV 381

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
            ++ +LF E+      F        T+LS  A   +L++G  + S        S + V N
Sbjct: 382 KESLELFKELQF--TGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGN 439

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           +L+DMY+KCG+  +A  +F  +  +  + W  MI  Y     +++ L LF +M ++ I  
Sbjct: 440 SLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGA 499

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           +  T+ S++ ACA L +L LGK +H++I  +   ++NV   ++L+DMYAKCG+IK A Q+
Sbjct: 500 DAATYASIVRACASLASLTLGKQLHSHIIGSGY-ISNVFSGSALVDMYAKCGSIKDALQM 558

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F  M  +   SWNA+IS  A +G  D  L LF  M+  GLQPD ++ + +L AC+H GL+
Sbjct: 559 FQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLV 618

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           + G QYF++M + YK+ PK +HY   +D+L R G FDEAE L+  M  +PD  +W+S+L 
Sbjct: 619 EEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLN 678

Query: 513 ACRVHGRLELGESVAKHLLELEP-ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
           +C +H   EL +  A  L  ++   +   YV +SN+YA AG WD+V  ++  + ++G+KK
Sbjct: 679 SCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKK 738

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
           VP  S +E+    H F   DK HPQ + I + LDE++  + K G+ PD+S  L+++DEE 
Sbjct: 739 VPAYSWVEIKHKTHVFTANDKTHPQMREIMKKLDELEEKMVKKGYKPDSSCALHNVDEEV 798

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           K  +L +HSE++AIA+ LIST  G+ I ++KNLR C +CH+A K+ISKI  REI  RD +
Sbjct: 799 KVESLKYHSERIAIAFALISTPEGSPILVMKNLRACTDCHAAIKVISKIVRREITVRDSS 858

Query: 692 RFHHFKDGNCSCNDYW 707
           RFHHF+DG C+C DYW
Sbjct: 859 RFHHFRDGFCTCRDYW 874



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 125/441 (28%), Positives = 222/441 (50%), Gaps = 5/441 (1%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G+LS A  +F+++ +   V W  +I G++ ++    A   ++ M   G  P+  +   +L
Sbjct: 146 GNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLL 205

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
               +  +++E +Q+H+HV+KLG +S   V  SL++ Y +   L  A  +FN    RD+V
Sbjct: 206 SGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSV 265

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           ++ AL+TGY+  G+  +A  LF +M  +E  + P E T   +L+A   +  +E G  V  
Sbjct: 266 TFNALLTGYSKEGFNREAINLFFKM--QEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHG 323

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
            +       N+ V NAL+D YSK   +V+A  LF  + + D IS+NV++  Y      KE
Sbjct: 324 FVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKE 383

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           +L LF+++  +  +  +  F ++L   A    LD+G+ IH+        ++ + +  SL+
Sbjct: 384 SLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVT-DAISEILVGNSLV 442

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI 437
           DMYAKCG    A ++F  +  ++   W AMIS     G  +  L LF  M    +  D  
Sbjct: 443 DMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAA 502

Query: 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT 497
           T+  ++ AC     L +G+Q  + +I    IS        +VD+  + G   +A  + + 
Sbjct: 503 TYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSG-SALVDMYAKCGSIKDALQMFQE 561

Query: 498 MEMKPDAAIWTSLLGACRVHG 518
           M ++ ++  W +L+ A   +G
Sbjct: 562 MPVR-NSVSWNALISAYAQNG 581



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 122/447 (27%), Positives = 214/447 (47%), Gaps = 17/447 (3%)

Query: 99  NNIIRGHSLS-----SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           NNII+  + +     ++P   +     +I +GF PNTY   F++KS  +   ++  +++ 
Sbjct: 65  NNIIKPCTRNLVTTLTAPKPHLHVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLF 124

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
             +       + F   ++I  Y ++G L  AR +F+    R AV++T LI GYA      
Sbjct: 125 DEM----PHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFR 180

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           +A  LF EM        P+  ++ T+LS      S+     V S +   G  S L V+N+
Sbjct: 181 EAFGLFIEMG--RHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNS 238

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           L+D Y K   L  A  LF  I +RD +++N ++ GY+     +EA+ LF +M +    P 
Sbjct: 239 LLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPT 298

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
           + TF ++L A   L  ++ G+ +H ++ K +  + NV +  +L+D Y+K   +  A ++F
Sbjct: 299 EFTFAAILTAGIQLDDIEFGQQVHGFVVKCN-FVWNVFVANALLDFYSKHDRVVEASKLF 357

Query: 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLD 453
             M      S+N +++  A +G+  ++L LF  +   G    +  F  +LS    +  LD
Sbjct: 358 YEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLD 417

Query: 454 IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
           IGRQ  +  I    IS  L     +VD+  + G F EA  +   + ++     WT+++ +
Sbjct: 418 IGRQIHSQTIVTDAISEILVG-NSLVDMYAKCGEFGEANRIFSDLAIQSSVP-WTAMISS 475

Query: 514 CRVHGRLELGESVAKHLLELEPENPGA 540
               G   L E   K  +E++    GA
Sbjct: 476 YVQKG---LHEDGLKLFVEMQRAKIGA 499


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 270/722 (37%), Positives = 401/722 (55%), Gaps = 83/722 (11%)

Query: 65  LSKLIEICAVSPFGDLSYALLVF-ET-IREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI 122
           +++   I A S  G+L  A  +F ET +   + V +N +I G+S  +    AI+ +  M 
Sbjct: 80  IARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMR 139

Query: 123 LSGFVPNTYTFPFILKSCAKISAIS-EGKQIHAHVLKLGLESDP---------------- 165
            + F P+ +TF  +L +   I     +  Q+H  V+K G+E  P                
Sbjct: 140 WANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASS 199

Query: 166 ------------------------FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTA 201
                                   F+ T+LI  Y +NG+L  AR + +  + +  +++ A
Sbjct: 200 PLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNA 259

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
           +I+GY   G  +DA  LF +M  R      +EST  +V+SACA  G   LG  V + I  
Sbjct: 260 MISGYLHHGLFEDALTLFRKM--RLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILK 317

Query: 262 HGLGSN----LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
           + L  +    L V N LI +Y K G +  AR +F  +  +D+I+WN ++ GY +    +E
Sbjct: 318 NELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEE 377

Query: 318 ALMLFRQMLQSNI-------------------------------EPNDVTFLSVLPACAY 346
           A   F QM + N+                               EPND  F   + AC+ 
Sbjct: 378 AKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSV 437

Query: 347 LGALDLGKWIHAYI-DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
           LGAL+ G+ +HA I    H   + +S+  ++I MYA+CG ++AA  +F  M +    SWN
Sbjct: 438 LGALENGRQLHAQIVHLGHD--STLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWN 495

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
           +MI+ L  HG   KA+ L+ +M+ EG+ PD  TF+ VLSAC+HAGL++ G +YFN+M+++
Sbjct: 496 SMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLEN 555

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
           Y I+P   HY  M+DL  RAG F +A+ ++ +M  +  A IW +LL  CR HG ++LG  
Sbjct: 556 YGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIE 615

Query: 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVH 585
            A+ L +L P++ G YVLLSNMYA  GRW+DVA  R  + D+G+KK P CS  EV + VH
Sbjct: 616 AAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENKVH 675

Query: 586 EFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAI 645
            FLV D VHP+   IY  L++++  ++K G++PDT  VL+DM+ E KE ALS HSEKLA+
Sbjct: 676 VFLVDDTVHPEVLSIYNYLEKLNLEMKKIGYIPDTKYVLHDMESEHKEYALSTHSEKLAV 735

Query: 646 AYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCND 705
           A+GL+    G T+R+ KNLR+CG+CH+A K +SK+  REI+ RD  RFHHFK+G CSC +
Sbjct: 736 AFGLMKLPQGATVRVFKNLRICGDCHNAIKFMSKVVGREIVVRDGKRFHHFKNGECSCRN 795

Query: 706 YW 707
           YW
Sbjct: 796 YW 797



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 133/499 (26%), Positives = 214/499 (42%), Gaps = 118/499 (23%)

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
           +S+ S  + +H HV+  G +    +   LI++Y ++ +   AR +F++    D ++ T L
Sbjct: 26  LSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTL 85

Query: 203 ITGYASRGYLDDARQLFDEMPI-------------------------------REENFVP 231
           IT Y++ G L  AR++F+E P+                               R  NF P
Sbjct: 86  ITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQP 145

Query: 232 NESTVVTVLSACAHMGSLELGNWVCSLIEG----HGLGSNLHVTNALIDMYSKC------ 281
           ++ T  +VLSA   +   E     C  + G     G+     V NAL+ +Y KC      
Sbjct: 146 DDFTFASVLSASTLIFYDERQ---CGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLV 202

Query: 282 ----------------------------------GDLVKARDLFESIEKRDVISWNVMIG 307
                                             GDL  AR++ +++ ++  I+WN MI 
Sbjct: 203 SSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMIS 262

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN---- 363
           GY H   +++AL LFR+M    ++ ++ T+ SV+ ACA  G   LGK +HAYI KN    
Sbjct: 263 GYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNP 322

Query: 364 ------------------------------HQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
                                            + ++  W +L+  Y   G ++ A+  F
Sbjct: 323 DRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFF 382

Query: 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLD 453
             M  K L +W  MISGLA +G  ++AL LF++M  +G +P+D  F G ++AC+  G L+
Sbjct: 383 AQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALE 442

Query: 454 IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
            GRQ  +A I        L     M+ +  R G+ + A  +  TM    D   W S++ A
Sbjct: 443 NGRQ-LHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPF-VDPVSWNSMIAA 500

Query: 514 CRVHGR----LELGESVAK 528
              HG     +EL E + K
Sbjct: 501 LGQHGHGVKAIELYEQMLK 519



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 94/194 (48%), Gaps = 8/194 (4%)

Query: 43  MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNII 102
           ++N +Q+H+QI+  G H++  ++   + I   +  G +  A  +F T+   + V WN++I
Sbjct: 441 LENGRQLHAQIVHLG-HDSTLSVGNAM-ITMYARCGIVEAARTMFLTMPFVDPVSWNSMI 498

Query: 103 RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLK-LGL 161
                    V AI+ Y +M+  G +P+  TF  +L +C+    + EG +    +L+  G+
Sbjct: 499 AALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGI 558

Query: 162 ESDPFVHTSLINMYAQNGELESARLVFNKSSLR-DAVSYTALITGYASRGYLD----DAR 216
                 +  +I+++ + G+   A+ V +       A  + AL+ G  + G +D     A 
Sbjct: 559 APGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAE 618

Query: 217 QLFDEMPIREENFV 230
           +LF  +P  +  +V
Sbjct: 619 KLFKLIPQHDGTYV 632


>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
 gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
          Length = 795

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 255/675 (37%), Positives = 392/675 (58%), Gaps = 20/675 (2%)

Query: 42  NMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNI 101
           N+   K+VHS I++TG    +  ++ ++E+      GD+  A  VF++I++PN   W  I
Sbjct: 132 NLDEGKRVHSHIMQTGYEGDRMVMNLVVEM--YGKCGDVEQAGNVFDSIQDPNVFSWTII 189

Query: 102 IRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLK-LG 160
           I  ++ +   +  ++   RM  +G  P+ YTF  +L +C  + A+ E K +HA  +   G
Sbjct: 190 IAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTG 249

Query: 161 LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD 220
           L+ D  V T+LIN+Y + G LE A  VF +   +D VS++++I  +A  G    A QL  
Sbjct: 250 LDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLM 309

Query: 221 EMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK 280
            M +  E   PN  T V VL A   + + + G  + + I   G   ++ +T+AL+ MY  
Sbjct: 310 LMDL--EGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCN 367

Query: 281 CGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSV 340
            G +  AR +FES  +RDV+SW+ MI GY+       AL LFR+M    ++PN VTF+S 
Sbjct: 368 WGWVETARSIFESSRERDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSA 427

Query: 341 LPACAYLGALDLGKWIHAYI-----DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
           + ACA +GAL  G  +H  +     DK+      V + T+L+++Y KCG ++ AE VF G
Sbjct: 428 IDACAGVGALRRGTQLHERVRCLGLDKD------VPVATALVNLYGKCGRLEEAEAVFLG 481

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
           M  K L +W ++      +G   ++L L   M  +G++PD I FV +L +CN+AG +  G
Sbjct: 482 MKKKNLLTWTSIAMAYGQNGHGSRSLKLLHGMELQGMKPDGIVFVAILVSCNYAGQMSKG 541

Query: 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACR 515
             Y+N M QD+ I+P ++H GCMVD+LGRAG  + AE L+ TM+ +   A W  LL AC+
Sbjct: 542 LHYYNLMTQDFGIAPAVEHCGCMVDILGRAGKLEAAEQLINTMKFESSLA-WMMLLTACK 600

Query: 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGC 575
            H         A+ + +LEP+N   YVLLS+++  AG W+     R R++ +G++++ G 
Sbjct: 601 AHNDTARAARAAEKIFQLEPKNATPYVLLSSVFCAAGSWEAAEETRRRMDGRGVQRLLGR 660

Query: 576 SSIEVGSVVHEFLVGDKVHPQS--KHIYEMLDEIDALLEKSGFVPDTSEV-LYDMDEEWK 632
           SSIE+G  VHEF+    V P      I+  L+++   ++ +G+VPD + V L D++E  K
Sbjct: 661 SSIEIGDRVHEFVAASDVLPHHLVGEIFAALEKLGREMQGAGYVPDATAVRLRDVEEGGK 720

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
           E A+ +HSE LA+  G+IST  GT +RI KNLR+C +CH ATK +SK+ +R I  RD  R
Sbjct: 721 ENAVPYHSEMLALGLGIISTPAGTPLRITKNLRMCSDCHIATKFVSKLVHRRISVRDGRR 780

Query: 693 FHHFKDGNCSCNDYW 707
            HHF++G CSC DYW
Sbjct: 781 HHHFENGVCSCGDYW 795



 Score =  240 bits (613), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 161/530 (30%), Positives = 273/530 (51%), Gaps = 22/530 (4%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPF---GDLSYALLVFE 88
           A+L+ C++++ +   K+VH  +++  L   +     L+E   +  +   G    AL VF+
Sbjct: 15  AILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALDVFD 74

Query: 89  TIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI-LKSCAKISAIS 147
            +++ N V W ++I   + +     A+  + +M+LSG  P+  TF  I LK   +   + 
Sbjct: 75  RMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGRERNLD 134

Query: 148 EGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA 207
           EGK++H+H+++ G E D  V   ++ MY + G++E A  VF+     +  S+T +I  YA
Sbjct: 135 EGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYA 194

Query: 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV-CSLIEGHGLGS 266
             G+  +  +L   M   +    P+  T  TVL AC  +G+LE    +  + I   GL  
Sbjct: 195 QNGHCMEVLRLLSRM--NQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDR 252

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML 326
           +  V  ALI++Y KCG L +A  +F  I+ +D++SW+ MI  +  +   K A+ L   M 
Sbjct: 253 DAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMD 312

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
              + PN+VTF++VL A   L A   GK IHA I +     ++V L ++L+ MY   G +
Sbjct: 313 LEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYS-DDVCLTSALVKMYCNWGWV 371

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
           + A  +F+    + + SW++MI+G + +    +ALSLF  M  +G+QP+ +TFV  + AC
Sbjct: 372 ETARSIFESSRERDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDAC 431

Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
              G L  G Q  +  ++   +   +     +V+L G+ G  +EAEA+   M+ K +   
Sbjct: 432 AGVGALRRGTQ-LHERVRCLGLDKDVPVATALVNLYGKCGRLEEAEAVFLGMK-KKNLLT 489

Query: 507 WTSLLGACRVHGRLELGESVAK--HLLELEPENPGAYV----LLSNMYAG 550
           WTS+  A   +G+   G    K  H +EL+   P   V    L+S  YAG
Sbjct: 490 WTSIAMA---YGQNGHGSRSLKLLHGMELQGMKPDGIVFVAILVSCNYAG 536



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 135/477 (28%), Positives = 232/477 (48%), Gaps = 49/477 (10%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSL-----INMYAQNGELESARLVFNK 190
           IL +C+ + A+ EGK++H  V++  L  D     SL     I MY + G  + A  VF++
Sbjct: 16  ILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALDVFDR 75

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL-SACAHMGSL 249
              ++ V++T+LI+ +   G+  DA  LF +M +      P+  T  ++L        +L
Sbjct: 76  MKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLL--SGVSPDRITFTSILLKWSGRERNL 133

Query: 250 ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309
           + G  V S I   G   +  V N +++MY KCGD+ +A ++F+SI+  +V SW ++I  Y
Sbjct: 134 DEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAY 193

Query: 310 THTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNN 369
                  E L L  +M Q+ ++P+  TF +VL AC  +GAL+  K +HA    +     +
Sbjct: 194 AQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRD 253

Query: 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG 429
            ++ T+LI++Y KCG ++ A  VF  +  K + SW++MI+  A  G+A  A+ L   M  
Sbjct: 254 AAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDL 313

Query: 430 EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ-----DYKISPKLQHYGCMVDLLGR 484
           EG++P+++TFV VL A         G++    ++Q     D  ++  L    C    +  
Sbjct: 314 EGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVET 373

Query: 485 A-GLFD------------------------EAEALLKTME---MKPDAAIWTSLLGACRV 516
           A  +F+                         A +L + ME   ++P++  + S + AC  
Sbjct: 374 ARSIFESSRERDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAG 433

Query: 517 HGRLELGESVAKHL--LELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
            G L  G  + + +  L L+ + P A  L+ N+Y   GR ++   +       GMKK
Sbjct: 434 VGALRRGTQLHERVRCLGLDKDVPVATALV-NLYGKCGRLEEAEAVFL-----GMKK 484


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 261/658 (39%), Positives = 396/658 (60%), Gaps = 20/658 (3%)

Query: 55  KTGLHNTQFAL-SKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVV 113
           K GL  T  A+ S LI++ A +  GDL+ A  VF+ + E   V+W  +I  +        
Sbjct: 180 KMGLWGTDVAVGSALIDMLARN--GDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEE 237

Query: 114 AIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLIN 173
           A++ ++  +  GF P+ YT   ++ +C ++ ++  G Q+H+  L++GL SD  V   L++
Sbjct: 238 AVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVD 297

Query: 174 MYAQNG---ELESARLVFNKSSLRDAVSYTALITGYASRGYLDD-ARQLFDEMPIREENF 229
           MYA++     ++ A  VF +    D +S+TALI+GY   G  ++    LF EM    E+ 
Sbjct: 298 MYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEML--NESI 355

Query: 230 VPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARD 289
            PN  T  ++L +CA +   + G  V + +      S   V NAL+ MY++ G + +AR 
Sbjct: 356 KPNHITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARR 415

Query: 290 LFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA 349
           +F  + +R       MI   T   D+     L  ++++ ++  +  TF S++ A A +G 
Sbjct: 416 VFNQLYERS------MIPCITEGRDFP----LDHRIVRMDVGISSSTFASLISAAASVGM 465

Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
           L  G+ +HA   K     +   +  SL+ MY++CG ++ A + F+ +  + + SW +MIS
Sbjct: 466 LTKGQQLHAMSLKAGFGSDRF-VSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMIS 524

Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS 469
           GLA HG A++ALSLF  MI  G++P+D+T++ VLSAC+H GL+  G++YF +M +D+ + 
Sbjct: 525 GLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLI 584

Query: 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKH 529
           P+++HY CMVDLL R+G+  EA   +  M +K DA +W +LLGACR H  +E+GE  AK+
Sbjct: 585 PRMEHYACMVDLLARSGIVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEITAKN 644

Query: 530 LLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLV 589
           ++ELEP +P  YVLLSN+YA AG WD+VA IR+ + D  + K  G S +EV +  HEF  
Sbjct: 645 VVELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRA 704

Query: 590 GDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGL 649
           GD  HP+++ IY  LD +   ++  G+VPDTS VL+DM +E KE  L  HSEK+A+A+GL
Sbjct: 705 GDTSHPRAQDIYGKLDTLVRQIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGL 764

Query: 650 ISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           I+T     IRI KNLRVC +CHSA K +SK   REII RD NRFH  KDG CSC +YW
Sbjct: 765 ITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 110/358 (30%), Positives = 183/358 (51%), Gaps = 12/358 (3%)

Query: 149 GKQIHAHVLKLGL-ESDPFVHTSLINMYAQNGELESARLVFNK-SSLRDAVSYTALITGY 206
           G+ +H  +L+  L + D  V  SL+ +Y++ G + SAR VF+    LRD VS+TA+ +  
Sbjct: 67  GRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCL 126

Query: 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC-AHMGSLELGNWVCSLIEGHGL- 264
           A  G    +  L  EM   E   +PN  T+     AC  H     +G  V  L+   GL 
Sbjct: 127 ARNGAERGSLLLIGEM--LESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMGLW 184

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
           G+++ V +ALIDM ++ GDL  AR +F+ + ++ V+ W ++I  Y      +EA+ LF  
Sbjct: 185 GTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLD 244

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
            L+   EP+  T  S++ AC  LG++ LG  +H+ +       ++  +   L+DMYAK  
Sbjct: 245 FLEDGFEPDRYTMSSMISACTELGSVRLGLQLHS-LALRMGLASDACVSCGLVDMYAKSN 303

Query: 385 NIKA---AEQVFDGMGYKTLASWNAMISGLAMHG-KADKALSLFSRMIGEGLQPDDITFV 440
             +A   A +VF+ M    + SW A+ISG    G + +K ++LF  M+ E ++P+ IT+ 
Sbjct: 304 IGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYS 363

Query: 441 GVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
            +L +C      D GRQ    +I+  + S        +V +   +G  +EA  +   +
Sbjct: 364 SILKSCASISDHDSGRQVHAHVIKSNQASAHTVG-NALVSMYAESGCMEEARRVFNQL 420



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 133/271 (49%), Gaps = 8/271 (2%)

Query: 247 GSLELGNWV-CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK-RDVISWNV 304
           G L LG  +   L+ G  L  +  V N+L+ +YS+CG +  AR++F+ +   RD++SW  
Sbjct: 62  GDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTA 121

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           M          + +L+L  +ML+S + PN  T  +   AC +   L            + 
Sbjct: 122 MASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHAC-FPHELYCLVGGVVLGLVHK 180

Query: 365 QKL--NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALS 422
             L   +V++ ++LIDM A+ G++ +A +VFDG+  KT+  W  +IS       A++A+ 
Sbjct: 181 MGLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVE 240

Query: 423 LFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482
           LF   + +G +PD  T   ++SAC   G + +G Q  +  ++    S      G +VD+ 
Sbjct: 241 LFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCG-LVDMY 299

Query: 483 GRAGLFDEAEALLKTMEMKP--DAAIWTSLL 511
            ++ +    +   K  E  P  D   WT+L+
Sbjct: 300 AKSNIGQAMDYANKVFERMPKNDVISWTALI 330


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 278/746 (37%), Positives = 426/746 (57%), Gaps = 53/746 (7%)

Query: 4   PPSSLTLSPSI-LHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIK---QVHSQIIKTGLH 59
           P ++LT    +  H  PS++  +         ALL  C  ++ +    QVH+ + + GL 
Sbjct: 33  PQTALTFFTRMQAHAVPSNNFTFP--------ALLKACAALRRLLPTLQVHAYLTRLGLA 84

Query: 60  NTQFALSKLIEICAVSPFGDLSYALLVFETIREP--NQVIWNNIIRGHSLSSSPVVAIKF 117
             +F+ + L++  A    G   YA  VF+ + E   + V W  +I  +S +     A   
Sbjct: 85  ADRFSAAALVD--AYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFXA 142

Query: 118 YVRM-ILSGFVP------NTYTFPFILKSCA---KISAISEGKQIHAHVLKLGLESDPFV 167
           + RM  + G+        +  +   ++ +CA     + +  G  +H  V+K G      +
Sbjct: 143 FGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHL 202

Query: 168 HTSLINMYAQNGELESARLVFNKSSL--RDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
             S+++MY+   ++  A  VFN   +  RD VS+ +LI+G+   G  + A + F++M   
Sbjct: 203 GNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSE 262

Query: 226 EENFV-PNESTVVTVLSACAHMGSLELGNWVCSLIEGHG----LGSNLHVTNALIDMYSK 280
             + V PN  TV+ +L +CA +G +E  +WV   I        +  ++ V  AL+DM+++
Sbjct: 263 GTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHAR 322

Query: 281 CGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN------IEPND 334
           CG+L  AR++F+ +E ++V+ W+ MI GY   S  +EAL LFRQML         ++PN 
Sbjct: 323 CGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNA 382

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           VT +SV+ AC+ LGA      IH Y         +  + ++LIDM AKCG+I+   QVF 
Sbjct: 383 VTLVSVIAACSRLGASRSASMIHKYAVATGLD-QDARIASALIDMCAKCGDIEHGRQVFS 441

Query: 395 GM--GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
            M    +T+ SW++MI    +HG+  +AL LFS M   G +P++IT++ VLSAC+HAGL+
Sbjct: 442 EMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLV 501

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           + G+  FN+M +DY +SP  +HY C+VDLLGRAG  DEA  ++  M +K D A+W SLL 
Sbjct: 502 EQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLA 561

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           AC +HG  +LGE V K +L L+  + G +VLL+NMY  AGRWDDV  +R  L   G++K+
Sbjct: 562 ACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKI 621

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSG-FVPDTSEVLYDMDEEW 631
           PG S IE+G+ V+ F+  D+ HP+S+ IY+ LD +D  + K+  +V +T   + D D   
Sbjct: 622 PGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGLDERVRKAAKYVTETGLNVEDGDIAG 681

Query: 632 KEGALSHHSEKLAIAYGLI----------STKPGTTIRIVKNLRVCGNCHSATKLISKIF 681
                 +HSE+LAIA+GLI          S +  T IRI KNLRVC +CH+ TKL+SK+ 
Sbjct: 682 LIXRCKYHSERLAIAFGLIMIDRHSTCSCSLRTATPIRITKNLRVCRDCHAYTKLVSKVI 741

Query: 682 NREIIARDRNRFHHFKDGNCSCNDYW 707
           +RE+I RD +RFHHF+DG CSC DYW
Sbjct: 742 DRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 151/483 (31%), Positives = 251/483 (51%), Gaps = 43/483 (8%)

Query: 89  TIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE 148
           +I   +   WN++I   + + +P  A+ F+ RM       N +TFP +LK+CA +  +  
Sbjct: 12  SISHKDTFHWNSLI-AKNATQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLP 70

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK--SSLRDAVSYTALITGY 206
             Q+HA++ +LGL +D F   +L++ Y + G    A  VF++      D VS+TALI+ Y
Sbjct: 71  TLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAY 130

Query: 207 ASRGYLDDARQLFDEMPIRE-----ENFVPNESTVVTVLSACA-HMGS--LELGNWVCSL 258
           +S G +D+A   F  M         E    +  ++  ++SACA   GS  L  G+ V  L
Sbjct: 131 SSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGL 190

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES--IEKRDVISWNVMIGGYTHTSDYK 316
           +  +G G + H+ N+++ MYS C D+  A  +F    IE+RDV+SWN +I G+    + +
Sbjct: 191 VVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAE 250

Query: 317 EALMLFRQMLQ---SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL---NNV 370
            AL  F  M+    S +EPN VT +++L +CA LG ++   W+H YI   H  L    +V
Sbjct: 251 RALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDV 310

Query: 371 SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE 430
            + T+L+DM+A+CGN+  A ++FDG+  K +  W+AMI+G       ++AL LF +M+ E
Sbjct: 311 VVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLME 370

Query: 431 G------LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQH----YGCMVD 480
           G      ++P+ +T V V++AC+      +G     +MI  Y ++  L         ++D
Sbjct: 371 GNMVGVEVKPNAVTLVSVIAACSR-----LGASRSASMIHKYAVATGLDQDARIASALID 425

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAI-WTSLLGACRVHGRLELGESVAKHLLELEPE-NP 538
           +  + G  +    +   M+      + W+S++GA  +HG         K  LEL  E   
Sbjct: 426 MCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGE-------GKRALELFSEMRT 478

Query: 539 GAY 541
           G Y
Sbjct: 479 GGY 481


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 245/588 (41%), Positives = 372/588 (63%), Gaps = 12/588 (2%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L+LL +CT+ ++++Q+H+Q+I   +H   F L + I++       D + A L+F  I  P
Sbjct: 35  LSLLKQCTSTKSLQQIHTQMIINAIHKPNFLLHRFIDL------KDFNNASLLFSQIPYP 88

Query: 94  NQVIWNNIIRGHSLSSSPV-VAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
           N+  +N +IRG + +     + I+FY +M   G  PN +T+PF+  +CA +  ++ G+  
Sbjct: 89  NEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNHGQCA 148

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H+ VLK GL +D  V  SLI MY++ GEL  AR VF++ S +D VS+ ++I+GY+  GY 
Sbjct: 149 HSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYA 208

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
            DA  LF EM  R+  F P+E T+V++L AC  +G L LG+W+   +  + +  N  V +
Sbjct: 209 GDAVGLFGEM--RDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGS 266

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           ALI MY KCGDL  AR +F+ + K+DV++WN MI GY       EA++LF  M +S + P
Sbjct: 267 ALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNP 326

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           + +T + VL ACA +GALD GKW+  Y  +   + N++ + T+LIDMYAKCG++  A +V
Sbjct: 327 DKITLVGVLSACASIGALDFGKWLDTYASERGLQ-NDIYVSTALIDMYAKCGSLDDALRV 385

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG--LQPDDITFVGVLSACNHAG 450
           F+ M  K   SWNAMIS LA HG+  ++LSLF RM  EG  ++P+DI+F+GVLSAC HAG
Sbjct: 386 FEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAG 445

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L+D GRQ F+ M   + + PK++H+ CMVDLL RAG   EA   ++ M  KPD  +  +L
Sbjct: 446 LVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPDEVVLGAL 505

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           LGAC+    +++ E V   LLE+EP N G Y++ S ++A   RWDD A +R  +  +G+ 
Sbjct: 506 LGACQKRRNVDVSERVMHMLLEMEPLNSGNYIISSKIFANMKRWDDSARMRVLMRQRGVT 565

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVP 618
           K PGCS IE+ + VHEF  GD +H  S+ + ++++ ++  ++  G+ P
Sbjct: 566 KTPGCSWIEIENQVHEFHAGDVLHFISQDMCQVINLLNEEMKVEGYGP 613


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 272/696 (39%), Positives = 395/696 (56%), Gaps = 72/696 (10%)

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSS----PVVAIKFYVRMILSGFVPNTYTFPF 135
           L Y L +F+ +      +++  +R    +S+    PV+ ++   RM   G     +TF F
Sbjct: 51  LRYVLSLFDRLPHSTTFLFDTALRACLQASAGADHPVLLLR---RMRSGGVRTGAFTFHF 107

Query: 136 ILKSCAKISAISEGK--QIHAHVLKLGLESD-PFVHTSLINMYAQNGELESARLVFNKSS 192
           + + CA  +    G    +HA  L+  L S  P V   LI+MYA  G  + AR  F++  
Sbjct: 108 VFRCCAAGARARAGLCLMLHAACLRTMLPSAAPLVANPLIHMYASMGLTDDARRAFDEIP 167

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIR--------------------------- 225
            +DAV +  +I G    G LD+AR+L  + P R                           
Sbjct: 168 AKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNC 227

Query: 226 --EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
              +   P+E  V+  LSAC+ + +L+LG  +  L+    +    ++  ALIDMY+KCGD
Sbjct: 228 MLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGD 287

Query: 284 LVKA--------------------------------RDLFESIEKRDVISWNVMIGGYTH 311
           + +A                                R LF+ +  RDVI++N MI GY H
Sbjct: 288 IAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIH 347

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
           +   ++AL LF QM +  +  ++ T +S+L ACA LGAL  G+ +HA I++   +  +V 
Sbjct: 348 SGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHASIEQRIVE-EDVY 406

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
           L T+L+DMY KCG +  A  VF  MG + + +W AMI+GLA +G    AL  F +M  +G
Sbjct: 407 LGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDG 466

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
            QP  +T++ VL+AC+H+ LLD GR +FN M   +K+ P+++HYGCM+DLL R+GL DEA
Sbjct: 467 FQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEA 526

Query: 492 EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA 551
             L++TM M+P+A IW S+L ACRVH  ++L    A+HLL+L PE    YV L N+Y  +
Sbjct: 527 MHLVQTMPMQPNAVIWGSILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDS 586

Query: 552 GRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALL 611
            +W D   +R  + ++G+KK  G SSI V   VH+F+  D+ HP +  I  M++EI   L
Sbjct: 587 RQWADAKRVRMLMEERGVKKTAGYSSITVAGQVHKFVANDQSHPWTLEIMAMMEEIACRL 646

Query: 612 EKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCH 671
           +  G+ P TS +  D+DEE KE AL  HSEK+AIA+GLIS  P   I IVKNLRVC +CH
Sbjct: 647 KSVGYSPVTSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPSLPIHIVKNLRVCEDCH 706

Query: 672 SATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           SA KL+S+++NREII RDR+RFHHF+DG CSCND+W
Sbjct: 707 SAIKLVSQLWNREIIVRDRSRFHHFRDGACSCNDFW 742



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 118/222 (53%), Gaps = 9/222 (4%)

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
            G +  A  +F+ +   + + +N++I G+  S     A++ +++M   G   + +T   +
Sbjct: 317 LGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSL 376

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L +CA + A+  G+ +HA + +  +E D ++ T+L++MY + G ++ A  VF++   RD 
Sbjct: 377 LTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDV 436

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG---- 252
            ++TA+I G A  G   DA + F +M  + + F P   T + VL+AC+H   L+ G    
Sbjct: 437 HTWTAMIAGLAFNGMGKDALESFCQM--KRDGFQPTSVTYIAVLTACSHSSLLDEGRLHF 494

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
           N + SL   H L   +     +ID+ ++ G L +A  L +++
Sbjct: 495 NEMRSL---HKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTM 533


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 247/626 (39%), Positives = 372/626 (59%), Gaps = 25/626 (3%)

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           A  +F+ + + + + WN++I G+  +      +  Y +M+  G   +  T   +L  CA 
Sbjct: 204 AFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
              +S GK +H+  +K   E       +L++MY++ G+L+ A  VF K   R+ VS+T++
Sbjct: 264 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 323

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
           I GY   G  D A +L  +M   +E    +   + ++L ACA  GSL+ G  V   I+ +
Sbjct: 324 IAGYTRDGRSDGAIKLLQQM--EKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN 381

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
            + SNL V NAL+DMY+KCG +  A  +F ++  +D+ISWN MIG               
Sbjct: 382 NMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIG--------------- 426

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
                  ++P+  T   VLPACA L AL+ GK IH YI +N    ++  +  +L+D+Y K
Sbjct: 427 ------ELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYS-SDRHVANALVDLYVK 479

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
           CG +  A  +FD +  K L SW  MI+G  MHG  ++A++ F+ M   G++PD+++F+ +
Sbjct: 480 CGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISI 539

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
           L AC+H+GLL+ G ++F  M  D+ I PKL+HY CMVDLL R G   +A   ++T+ + P
Sbjct: 540 LYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAP 599

Query: 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562
           DA IW +LL  CR +  +EL E VA+ + ELEPEN G YVLL+N+YA A +W++V  +R 
Sbjct: 600 DATIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLRE 659

Query: 563 RLNDKGMKKVPGCSSIEVGSVVHEFLVGDK-VHPQSKHIYEMLDEIDALLEKSGFVPDTS 621
           ++  +G++K PGCS IE+   V+ F+ G+   HP SK+I  +L ++   +++ G  P T 
Sbjct: 660 KIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTK 719

Query: 622 EVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIF 681
             L + DE  KE AL  HSEKLA+A+GL++  P  TIR+ KNLRVCG+CH   K +SK  
Sbjct: 720 YALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKET 779

Query: 682 NREIIARDRNRFHHFKDGNCSCNDYW 707
            REI+ RD NRFHHFKDG CSC  +W
Sbjct: 780 RREIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  185 bits (470), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 124/416 (29%), Positives = 210/416 (50%), Gaps = 33/416 (7%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           +++L  C N   +   K VHS  IK+         + L+++   S  GDL  AL VFE +
Sbjct: 255 ISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDM--YSKCGDLDGALRVFEKM 312

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            E N V W ++I G++       AIK   +M   G   +      IL +CA+  ++  GK
Sbjct: 313 GERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGK 372

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            +H ++    +ES+ FV  +L++MYA+ G +E+A  VF+   ++D +S+  +I       
Sbjct: 373 DVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIG------ 426

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
                               P+  T+  VL ACA + +LE G  +   I  +G  S+ HV
Sbjct: 427 -----------------ELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHV 469

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            NAL+D+Y KCG L  AR LF+ I  +D++SW VMI GY       EA+  F +M  + I
Sbjct: 470 ANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGI 529

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN-NVSLWTSLIDMYAKCGNIKAA 389
           EP++V+F+S+L AC++ G L+ G W   YI KN   +   +  +  ++D+ ++ GN+  A
Sbjct: 530 EPDEVSFISILYACSHSGLLEQG-WRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKA 588

Query: 390 EQVFDGMGYKTLAS-WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
            +  + +     A+ W A++ G   +   + A  +  R+    L+P++  +  +L+
Sbjct: 589 YEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVF--ELEPENTGYYVLLA 642



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 144/495 (29%), Positives = 228/495 (46%), Gaps = 83/495 (16%)

Query: 28  LQNQPSLALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALS-KLIEICAVSPFGDLSYA 83
           L+ +   ++L  C  +++    K+VHS IIK+       AL  KL+   A    GDL   
Sbjct: 97  LETKTYGSVLQLCAGLKSFTDGKKVHS-IIKSNSVGVDGALGLKLVSFYATC--GDLKEG 153

Query: 84  LLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKI 143
             VF+T+ + N  +WN                                   F++   AKI
Sbjct: 154 RRVFDTMEKKNVYLWN-----------------------------------FMVSEYAKI 178

Query: 144 SAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALI 203
               E   +   +++ G+E                   ESA  +F+K   RD +S+ ++I
Sbjct: 179 GDFKESICLFKIMVEKGIEGK---------------RPESAFELFDKLCDRDVISWNSMI 223

Query: 204 TGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG 263
           +GY S G  +    ++ +M     +   + +T+++VL  CA+ G+L LG  V SL     
Sbjct: 224 SGYVSNGLTERGLGIYKQMMYLGIDV--DLATIISVLVGCANSGTLSLGKAVHSLAIKSS 281

Query: 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFR 323
               ++ +N L+DMYSKCGDL  A  +FE + +R+V+SW  MI GYT       A+ L +
Sbjct: 282 FERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQ 341

Query: 324 QMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383
           QM +  ++ + V   S+L ACA  G+LD GK +H YI  N+ + +N+ +  +L+DMYAKC
Sbjct: 342 QMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNME-SNLFVCNALMDMYAKC 400

Query: 384 GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
           G+++AA  VF  M  K + SWN                     MIGE L+PD  T   VL
Sbjct: 401 GSMEAANSVFSTMVVKDIISWNT--------------------MIGE-LKPDSRTMACVL 439

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
            AC     L+ G++    ++++   S        +VDL  + G+   A  L   +  K D
Sbjct: 440 PACASLSALERGKEIHGYILRN-GYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSK-D 497

Query: 504 AAIWTSLLGACRVHG 518
              WT ++    +HG
Sbjct: 498 LVSWTVMIAGYGMHG 512



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/398 (26%), Positives = 180/398 (45%), Gaps = 70/398 (17%)

Query: 199 YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           Y A I  +   G L++A +L       E        T  +VL  CA + S   G  V S+
Sbjct: 69  YNAKILHFCQLGDLENAMELICMCQKSE----LETKTYGSVLQLCAGLKSFTDGKKVHSI 124

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
           I+ + +G +  +   L+  Y+ CGDL + R +F+++EK++V  WN M+  Y    D+KE+
Sbjct: 125 IKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKES 184

Query: 319 LMLFRQMLQSNIE---------------PNDV---------------------------- 335
           + LF+ M++  IE                 DV                            
Sbjct: 185 ICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMY 244

Query: 336 --------TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
                   T +SVL  CA  G L LGK +H+   K+  +   ++   +L+DMY+KCG++ 
Sbjct: 245 LGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFE-RRINFSNTLLDMYSKCGDLD 303

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
            A +VF+ MG + + SW +MI+G    G++D A+ L  +M  EG++ D +    +L AC 
Sbjct: 304 GALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACA 363

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM--------- 498
            +G LD G+   +  I+   +   L     ++D+  + G  + A ++  TM         
Sbjct: 364 RSGSLDNGKDVHD-YIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWN 422

Query: 499 ----EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
               E+KPD+     +L AC     LE G+ +  ++L 
Sbjct: 423 TMIGELKPDSRTMACVLPACASLSALERGKEIHGYILR 460



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 118/288 (40%), Gaps = 57/288 (19%)

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
           V  +N  I  +    D + A+ L     +S +E    T+ SVL  CA L +   GK +H+
Sbjct: 66  VTDYNAKILHFCQLGDLENAMELICMCQKSELETK--TYGSVLQLCAGLKSFTDGKKVHS 123

Query: 359 YIDKNHQKLN------------------------------NVSLWTSLIDMYAKCGNIK- 387
            I  N   ++                              NV LW  ++  YAK G+ K 
Sbjct: 124 IIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKE 183

Query: 388 -------------------AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMI 428
                              +A ++FD +  + + SWN+MISG   +G  ++ L ++ +M+
Sbjct: 184 SICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMM 243

Query: 429 GEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488
             G+  D  T + VL  C ++G L +G+   +  I+      ++     ++D+  + G  
Sbjct: 244 YLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS-SFERRINFSNTLLDMYSKCGDL 302

Query: 489 DEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536
           D A  + + M  + +   WTS++      GR    +   K L ++E E
Sbjct: 303 DGALRVFEKMGER-NVVSWTSMIAGYTRDGR---SDGAIKLLQQMEKE 346


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 253/606 (41%), Positives = 364/606 (60%), Gaps = 39/606 (6%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           ++ SC  +  I   KQ HA ++   L S P     L+ + A    L  A  +F++    D
Sbjct: 22  LIDSCKSMQQI---KQTHAQLITTALISHPVSANKLLKL-AACASLSYAHKLFDQIPQPD 77

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
              Y  +I  ++   +      +      ++    PN  + V   SAC +   ++ G  V
Sbjct: 78  LFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGVQEGEQV 137

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSK-------------------------------CGDL 284
                  GL +N+ V NALI MY K                                G++
Sbjct: 138 RIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVGSGNM 197

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
             A++LF+ + +RDV+SW+ +I GY     + EAL  F +MLQ   +PN+ T +S L AC
Sbjct: 198 SLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAAC 257

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT-LAS 403
           + L ALD GKWIHAYI K   K+N   L  S+IDMYAKCG I++A +VF     K  +  
Sbjct: 258 SNLVALDQGKWIHAYIGKGEIKMNE-RLLASIIDMYAKCGEIESASRVFFEHKVKQKVWL 316

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
           WNAMI G AMHG  ++A+++F +M  E + P+ +TF+ +L+AC+H  +++ G+ YF  M+
Sbjct: 317 WNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALLNACSHGYMVEEGKLYFRLMV 376

Query: 464 QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELG 523
            DY I+P+++HYGCMVDLL R+GL  EAE ++ +M M PD AIW +LL ACR++  +E G
Sbjct: 377 SDYAITPEIEHYGCMVDLLSRSGLLKEAEDMISSMPMAPDVAIWGALLNACRIYKDMERG 436

Query: 524 ESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN-DKGMKKVPGCSSIEVGS 582
             + + +  ++P + G +VLLSN+Y+ +GRW++   +R +    +  KK+PGCSSIE+  
Sbjct: 437 YRIGRIIKGMDPNHIGCHVLLSNIYSTSGRWNEARILREKNEISRDRKKIPGCSSIELKG 496

Query: 583 VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM-DEEWKEGALSHHSE 641
             H+FLVGD+ HPQS+ IY  LDE+   L+ +G+VP+  E+L+D+ DEE KE ALS HSE
Sbjct: 497 TFHQFLVGDQSHPQSREIYSFLDEMTTKLKSAGYVPELGELLHDIDDEEDKETALSVHSE 556

Query: 642 KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
           KLAIA+GL++T  GT IRIVKNLRVCG+CH ATK ISK++NR II RDR R+HHF+DG C
Sbjct: 557 KLAIAFGLMNTANGTPIRIVKNLRVCGDCHQATKFISKVYNRVIIVRDRTRYHHFEDGIC 616

Query: 702 SCNDYW 707
           SC DYW
Sbjct: 617 SCKDYW 622



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 134/458 (29%), Positives = 231/458 (50%), Gaps = 42/458 (9%)

Query: 15  LHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAV 74
           + F  +S  P+        ++L+  C +MQ IKQ H+Q+I T L +   + +KL+++ A 
Sbjct: 1   MRFYTTSAKPFHSDHYSRLVSLIDSCKSMQQIKQTHAQLITTALISHPVSANKLLKLAAC 60

Query: 75  SPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILS--GFVPNTYT 132
           +    LSYA  +F+ I +P+  I+N +I+ HSLS           R +    G  PN Y+
Sbjct: 61  A---SLSYAHKLFDQIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYS 117

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           F F   +C     + EG+Q+  H +K+GLE++ FV  +LI MY + G +  ++ VF  + 
Sbjct: 118 FVFAFSACGNGLGVQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAV 177

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV---------------------- 230
            RD  S+  LI  Y   G +  A++LFD M  RE + V                      
Sbjct: 178 DRDLYSWNTLIAAYVGSGNMSLAKELFDGM--RERDVVSWSTIIAGYVQVGCFMEALDFF 235

Query: 231 ---------PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC 281
                    PNE T+V+ L+AC+++ +L+ G W+ + I    +  N  +  ++IDMY+KC
Sbjct: 236 HKMLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKC 295

Query: 282 GDLVKA-RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSV 340
           G++  A R  FE   K+ V  WN MIGG+       EA+ +F QM    I PN VTF+++
Sbjct: 296 GEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIAL 355

Query: 341 LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK- 399
           L AC++   ++ GK     +  ++     +  +  ++D+ ++ G +K AE +   M    
Sbjct: 356 LNACSHGYMVEEGKLYFRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEAEDMISSMPMAP 415

Query: 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI 437
            +A W A+++   ++   ++   +  R+I +G+ P+ I
Sbjct: 416 DVAIWGALLNACRIYKDMERGYRI-GRII-KGMDPNHI 451


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 252/668 (37%), Positives = 385/668 (57%), Gaps = 44/668 (6%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRG---HSLSSSPVVAIKFYVRMILSGFVPNTYTFP 134
           GD + A  +F+ I +P+    + +I     H LS+    AIK Y  +   G  P+   F 
Sbjct: 26  GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNE---AIKIYSSLQERGIKPDMPVFL 82

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
              K+CA        K++H    + G+ SD FV  +LI+ Y +   +E AR VF+   +R
Sbjct: 83  AAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVR 142

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
           D VS+T+L + Y   G+      +F EM        PN  TV ++L ACA +  L+ G  
Sbjct: 143 DVVSWTSLSSCYVKCGFPRKGMDVFREMGW--SGVKPNPMTVSSILPACAELKDLKSGKE 200

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           +      HG+  NL V +AL+ +Y+KC  + +AR +F+ +  RDV+SWN ++  Y    +
Sbjct: 201 IHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKE 260

Query: 315 YK-----------------------------------EALMLFRQMLQSNIEPNDVTFLS 339
           Y+                                   EA+ +FR+M +   +PN++T  S
Sbjct: 261 YEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISS 320

Query: 340 VLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK 399
           +LPAC++   L +GK IH Y+ + H K+ +++  T+L+ MYAKCG++  +  VFD M  K
Sbjct: 321 ILPACSFSENLRMGKEIHCYVFR-HWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRK 379

Query: 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF 459
            + +WN MI   AMHG   +AL LF +M+   +QP+ +TF GVLS C+H+ L++ G Q F
Sbjct: 380 DVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIF 439

Query: 460 NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
           N+M +D+ + P   HY C+VD+  RAG  +EA   ++ M M+P A+ W +LL ACRV+  
Sbjct: 440 NSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKN 499

Query: 520 LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIE 579
           +EL +  AK L E+EP NPG YV L N+   A  W + + +R  + ++G+ K PGCS ++
Sbjct: 500 VELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQ 559

Query: 580 VGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHH 639
           VG+ VH F+VGDK + +S  IY  LDE+   ++ +G+ PDT  VL D+D+E K  +L +H
Sbjct: 560 VGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCNH 619

Query: 640 SEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDG 699
           SEKLA+A+G+++    +TIR+ KNLR+CG+CH+A K +SK+    I+ RD  RFHHFK+G
Sbjct: 620 SEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNG 679

Query: 700 NCSCNDYW 707
           NCSC D W
Sbjct: 680 NCSCKDLW 687



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 181/383 (47%), Gaps = 40/383 (10%)

Query: 171 LINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV 230
           LI +    G+   AR +F+     D  + + LI+   + G  ++A +++  +  +E    
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSL--QERGIK 75

Query: 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDL 290
           P+    +    ACA  G       V       G+ S++ V NALI  Y KC  +  AR +
Sbjct: 76  PDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRV 135

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350
           F+ +  RDV+SW  +   Y      ++ + +FR+M  S ++PN +T  S+LPACA L  L
Sbjct: 136 FDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDL 195

Query: 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL--------- 401
             GK IH +  + H  + N+ + ++L+ +YAKC +++ A  VFD M ++ +         
Sbjct: 196 KSGKEIHGFAVR-HGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTA 254

Query: 402 --------------------------ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
                                     A+WNA+I G   +G++++A+ +F +M   G +P+
Sbjct: 255 YFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPN 314

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
           +IT   +L AC+ +  L +G++    + + +K+   L     ++ +  + G  + +  + 
Sbjct: 315 EITISSILPACSFSENLRMGKEIHCYVFRHWKVG-DLTSTTALLYMYAKCGDLNLSRNVF 373

Query: 496 KTMEMKPDAAIWTSLLGACRVHG 518
             M  K D   W +++ A  +HG
Sbjct: 374 DMMRRK-DVVAWNTMIIANAMHG 395



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 146/343 (42%), Gaps = 26/343 (7%)

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
           H+   LI +    GD  +AR LF++I + D  + + +I   T      EA+ ++  + + 
Sbjct: 13  HLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQER 72

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            I+P+   FL+   ACA  G     K +H    +    +++V +  +LI  Y KC  ++ 
Sbjct: 73  GIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGV-MSDVFVGNALIHAYGKCKCVEG 131

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A +VFD +  + + SW ++ S     G   K + +F  M   G++P+ +T   +L AC  
Sbjct: 132 ARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAE 191

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
              L  G++     ++ + +   L     +V L  +     EA  +   M  + D   W 
Sbjct: 192 LKDLKSGKEIHGFAVR-HGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHR-DVVSWN 249

Query: 509 SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA----GRWDDVATIRTRL 564
            +L A   +   E G S+    L++  +   A     N   G     GR ++   +  ++
Sbjct: 250 GVLTAYFKNKEYEKGFSL---FLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKM 306

Query: 565 NDKGMKK--------VPGCS---SIEVGSVVHEFL-----VGD 591
              G K         +P CS   ++ +G  +H ++     VGD
Sbjct: 307 QKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGD 349



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 106/218 (48%), Gaps = 21/218 (9%)

Query: 35  ALLSKCTNMQNI---KQVHSQII---KTGLHNTQFALSKLIEICAVSPFGDLSYALLVFE 88
           ++L  C+  +N+   K++H  +    K G   +  AL  +   C     GDL+ +  VF+
Sbjct: 320 SILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKC-----GDLNLSRNVFD 374

Query: 89  TIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE 148
            +R  + V WN +I  +++  +   A+  + +M+LS   PN+ TF  +L  C+    + E
Sbjct: 375 MMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEE 434

Query: 149 GKQIHAHVLKLGL-ESDPFVHTSLINMYAQNGEL-ESARLVFNKSSLRDAVSYTALITGY 206
           G QI   + +  L E D   ++ ++++Y++ G L E+ + +        A ++ AL+   
Sbjct: 435 GVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLA-- 492

Query: 207 ASRGYLD------DARQLFDEMPIREENFVPNESTVVT 238
           A R Y +       A++LF+  P    N+V   + +VT
Sbjct: 493 ACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVT 530


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 249/575 (43%), Positives = 363/575 (63%), Gaps = 9/575 (1%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN--GELESARLVFNKSSL 193
           +LK C    ++ E KQ+HAH+LKLGL  D F  ++L+   A +  G +E A  +F++   
Sbjct: 37  LLKRC---KSMEEFKQVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFSQIEE 93

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
             +  Y  +I G  +   L++A  L+ EM   E    P+  T   VL AC+ + +L+ G 
Sbjct: 94  PGSFEYNTMIRGNVNSMDLEEALLLYVEM--LERGIEPDNFTYPFVLKACSLLVALKEGV 151

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTS 313
            + + +   GL  ++ V N LI MY KCG +  A  +FE ++++ V SW+ +IG +    
Sbjct: 152 QIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVE 211

Query: 314 DYKEALMLFRQML-QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
            + E LML   M  +      +   +S L AC +LG+ +LG+ IH  + +N  +LN V +
Sbjct: 212 MWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELN-VVV 270

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
            TSLIDMY KCG+++    VF  M +K   S+  MI+GLA+HG+  +A+ +FS M+ EGL
Sbjct: 271 KTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFSDMLEEGL 330

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
            PDD+ +VGVLSAC+HAGL++ G Q FN M  ++ I P +QHYGCMVDL+GRAG+  EA 
Sbjct: 331 TPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAY 390

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552
            L+K+M +KP+  +W SLL AC+VH  LE+GE  A+++  L   NPG Y++L+NMYA A 
Sbjct: 391 DLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRLNKHNPGDYLVLANMYARAK 450

Query: 553 RWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE 612
           +W +VA IRT + +K + + PG S +E    V++F+  DK  P  + IY+M+ +++  L+
Sbjct: 451 KWANVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPICETIYDMIQQMEWQLK 510

Query: 613 KSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHS 672
             G+ PD S+VL D+DE+ K   L HHS+KLAIA+ LI T  G+ IRI +NLR+C +CH+
Sbjct: 511 FEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPIRISRNLRMCNDCHT 570

Query: 673 ATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            TK IS I+ REI  RDRNRFHHFKDG CSC DYW
Sbjct: 571 YTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 605



 Score =  236 bits (603), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 133/398 (33%), Positives = 211/398 (53%), Gaps = 2/398 (0%)

Query: 18  PPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF 77
           PP S         Q  L+LL +C +M+  KQVH+ I+K GL    F  S L+  CA+S +
Sbjct: 19  PPQSSELNAKFNEQGWLSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVASCALSRW 78

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G + YA  +F  I EP    +N +IRG+  S     A+  YV M+  G  P+ +T+PF+L
Sbjct: 79  GSMEYACSIFSQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVL 138

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
           K+C+ + A+ EG QIHAHV K GLE D FV   LI+MY + G +E A +VF +   +   
Sbjct: 139 KACSLLVALKEGVQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVA 198

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           S++++I  +AS     +   L  +M   E      ES +V+ LSAC H+GS  LG  +  
Sbjct: 199 SWSSIIGAHASVEMWHECLMLLGDMS-GEGRHRAEESILVSALSACTHLGSPNLGRCIHG 257

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
           ++  +    N+ V  +LIDMY KCG L K   +F+++  ++  S+ VMI G       +E
Sbjct: 258 ILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGRE 317

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           A+ +F  ML+  + P+DV ++ VL AC++ G ++ G      +   H     +  +  ++
Sbjct: 318 AVRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQHYGCMV 377

Query: 378 DMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMH 414
           D+  + G +K A  +   M  K     W +++S   +H
Sbjct: 378 DLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVH 415


>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Vitis vinifera]
          Length = 607

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 257/582 (44%), Positives = 363/582 (62%), Gaps = 14/582 (2%)

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDP--FVHTSLINMYAQNGELESARLVFNKSS 192
             L SC   + IS+ KQ+HA  ++      P  F   S I  ++   +L  A  VF++  
Sbjct: 31  LFLNSC---TCISQLKQLHAQTIRTTSSHHPNTFFLYSRILHFSSLHDLRYAFRVFHQIE 87

Query: 193 LRDAVSYTALITGYA-SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL 251
             ++  + ALI   A S      A  L+  M + + + + ++ T   VL ACA++ +L  
Sbjct: 88  NPNSFMWNALIRACARSTDRKQHAIALYHRM-LEQGSVMQDKHTFPFVLKACAYLFALSE 146

Query: 252 GNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311
           G  + + I   G  S++++ N+L+  Y+ C  L  A+ +F+ + +R ++SWNV+I  +  
Sbjct: 147 GEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVR 206

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK--NHQKLNN 369
             ++  AL LF +M Q   EP+  T  S+  ACA +G+L LG W H ++ K  +  ++N+
Sbjct: 207 FGEFDAALNLFGEM-QKFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKFDADRVND 265

Query: 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMI- 428
           V L TSL+DMY KCG+++ A Q+F  M  + + SWN+MI G + HG+   AL  F  M+ 
Sbjct: 266 VLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVR 325

Query: 429 GEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488
            E L P+ ITFVGVLSACNH GL+  GR+YF+ M+ +YKI P+L+HYGC+VDLL RAGL 
Sbjct: 326 TEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLI 385

Query: 489 DEAEALLKTMEMKPDAAIWTSLLGAC-RVHGRLELGESVAKHLLELEPE-NPGAYVLLSN 546
           DEA  ++  M M+PD  IW SLL AC + +  +EL E +A+ +LE E     G YVLLS 
Sbjct: 386 DEALDVVSNMPMRPDLVIWRSLLDACCKQNAGVELSEEMARRVLEAEGGVCSGVYVLLSR 445

Query: 547 MYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDE 606
           +YA A RW+DV  +R  + DKG+ K PGCSSIE+  V HEF  GD  HPQ++ IY  LD 
Sbjct: 446 VYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAGDTSHPQTEEIYSALDV 505

Query: 607 IDALLEKSGFVPDTSEV-LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLR 665
           I+  +E+ G+ PD+S+  + D   + K+ +L  HSE+LAIA+GL+ TKPG  IRI KNLR
Sbjct: 506 IEERVERVGYSPDSSQAPMVDETIDGKQYSLRLHSERLAIAFGLLKTKPGMPIRIFKNLR 565

Query: 666 VCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           VC NCH  TKLIS++FNREII RDR RFHHFKDG CSC DYW
Sbjct: 566 VCNNCHQVTKLISRVFNREIIVRDRIRFHHFKDGACSCMDYW 607



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 141/417 (33%), Positives = 217/417 (52%), Gaps = 25/417 (5%)

Query: 4   PPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLH---N 60
           PPS         H P +         ++  L  L+ CT +  +KQ+H+Q I+T      N
Sbjct: 9   PPS---------HLPHAISNSDSFTHHRRLLLFLNSCTCISQLKQLHAQTIRTTSSHHPN 59

Query: 61  TQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVV-AIKFYV 119
           T F  S+++     S   DL YA  VF  I  PN  +WN +IR  + S+     AI  Y 
Sbjct: 60  TFFLYSRILHF---SSLHDLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYH 116

Query: 120 RMILSGFV-PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN 178
           RM+  G V  + +TFPF+LK+CA + A+SEG+QIHA +LKLG +SD +++ SL++ YA  
Sbjct: 117 RMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATC 176

Query: 179 GELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVT 238
             L+ A+ VF++ S R  VS+  +I  +   G  D A  LF EM   ++ F P+  T+ +
Sbjct: 177 DRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEM---QKFFEPDGYTIQS 233

Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLH---VTNALIDMYSKCGDLVKARDLFESIE 295
           + +ACA MGSL LG W    +        ++   +  +L+DMY KCG L  A  LF  + 
Sbjct: 234 IANACAGMGSLSLGMWAHVFLLKKFDADRVNDVLLNTSLVDMYCKCGSLELALQLFHRMP 293

Query: 296 KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS-NIEPNDVTFLSVLPACAYLGALDLGK 354
           KRDV SWN MI G++   +   AL  F  M+++  + PN +TF+ VL AC + G +  G+
Sbjct: 294 KRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGR 353

Query: 355 WIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISG 410
                +   ++    +  +  L+D+ A+ G I  A  V   M  +  L  W +++  
Sbjct: 354 RYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDA 410


>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 259/588 (44%), Positives = 368/588 (62%), Gaps = 23/588 (3%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELES------ARL 186
           F  +L  C  +S +   KQIHA  ++     +   H S + +Y++   + S      A  
Sbjct: 28  FLHLLTDCTDLSKL---KQIHAQAIR-----NFSTHNSSLFLYSRILHVSSLIDFDYACR 79

Query: 187 VFNKSSLRDAVSYTALITGYA-SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH 245
           VFN+    ++  +  LI   A S    + A ++F  M + E +  P++ T   +L ACA+
Sbjct: 80  VFNQIDNPNSFMWNTLIGACARSLDRKEQAIEIFYRM-LEEGSVEPDKHTFPFLLKACAY 138

Query: 246 MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVM 305
           + +L  G    + I   GL  +++V N+LI +Y+ CG L  A  +FE +  R ++SWNVM
Sbjct: 139 VFALSEGRQAHAQIFKLGLDLDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVM 198

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365
           I  Y  +  ++ AL LF +M Q++ EP+  T  S++ ACA +GAL LG W HAY+ +   
Sbjct: 199 IDAYVQSGLFENALKLFVEM-QNSFEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKAS 257

Query: 366 --KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSL 423
                +V + +SL+DMY+KCG+++ A+QVF+ M    L SWN+MI  LAMHG+   AL  
Sbjct: 258 GAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILALAMHGRGQAALQC 317

Query: 424 FSRMIG-EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482
           FSR++  E   P+ +TFVGVLSACNH G++  GR+YF+ M+ DYKI P+L+HYGC+VDLL
Sbjct: 318 FSRLVEMEKFLPNSVTFVGVLSACNHGGMVADGRKYFDMMVNDYKIEPRLEHYGCLVDLL 377

Query: 483 GRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC-RVHGRLELGESVAKHLLELEPE-NPGA 540
            R+G  DEA  L+  M +KPDA IW SLL AC + +  +EL E VA  +L+ E   + G 
Sbjct: 378 SRSGFIDEALELVANMHIKPDAVIWRSLLDACYKQNAGVELSEEVAFKILQSEKTISSGV 437

Query: 541 YVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHI 600
           YV+LS +YA A +W+DV  IR  + D G+ K PGCSSIE+  + HEF  GD  HP+ K I
Sbjct: 438 YVMLSRVYASARQWNDVGIIRKVMTDMGVTKEPGCSSIEIDGISHEFFAGDTSHPRIKEI 497

Query: 601 YEMLDEIDALLEKSGFVPDTSE-VLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIR 659
           Y ++D I+  LE+ G+ PD S+  + D  +  K+ +L  HSE+LAIA+GL++ KPGT +R
Sbjct: 498 YGVIDLIEEKLERRGYSPDCSQATMVDEPDNIKQQSLKLHSERLAIAFGLLNLKPGTPVR 557

Query: 660 IVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           I KNLRVC +CH  TKLIS+IFN EII RDRNRFHHFK G CSC D+W
Sbjct: 558 IFKNLRVCNDCHQVTKLISEIFNVEIIMRDRNRFHHFKHGMCSCMDFW 605



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/385 (34%), Positives = 212/385 (55%), Gaps = 13/385 (3%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKT-GLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           L LL+ CT++  +KQ+H+Q I+    HN+   L     I  VS   D  YA  VF  I  
Sbjct: 29  LHLLTDCTDLSKLKQIHAQAIRNFSTHNSSLFLYS--RILHVSSLIDFDYACRVFNQIDN 86

Query: 93  PNQVIWNNIIRGHSLS-SSPVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGK 150
           PN  +WN +I   + S      AI+ + RM+  G V P+ +TFPF+LK+CA + A+SEG+
Sbjct: 87  PNSFMWNTLIGACARSLDRKEQAIEIFYRMLEEGSVEPDKHTFPFLLKACAYVFALSEGR 146

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           Q HA + KLGL+ D +V  SLI++YA  G L  A  VF K  LR  VS+  +I  Y   G
Sbjct: 147 QAHAQIFKLGLDLDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMIDAYVQSG 206

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS---N 267
             ++A +LF EM   + +F P+  T+ +++SACA +G+L LG W  + +     G+   +
Sbjct: 207 LFENALKLFVEM---QNSFEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKASGAMAGD 263

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
           + + ++L+DMYSKCG L  A+ +FE++ K D+ SWN MI         + AL  F ++++
Sbjct: 264 VLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILALAMHGRGQAALQCFSRLVE 323

Query: 328 -SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
                PN VTF+ VL AC + G +  G+     +  +++    +  +  L+D+ ++ G I
Sbjct: 324 MEKFLPNSVTFVGVLSACNHGGMVADGRKYFDMMVNDYKIEPRLEHYGCLVDLLSRSGFI 383

Query: 387 KAAEQVFDGMGYKTLAS-WNAMISG 410
             A ++   M  K  A  W +++  
Sbjct: 384 DEALELVANMHIKPDAVIWRSLLDA 408


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 261/658 (39%), Positives = 395/658 (60%), Gaps = 20/658 (3%)

Query: 55  KTGLHNTQFAL-SKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVV 113
           K GL  T  A+ S LI++ A +  GDL+ A  VF+ + E   V+W  +I  +        
Sbjct: 180 KMGLWGTDIAVGSALIDMLARN--GDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEE 237

Query: 114 AIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLIN 173
           A++ ++  +  GF P+ YT   ++ +C ++ ++  G Q+H+  L++G  SD  V   L++
Sbjct: 238 AVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVD 297

Query: 174 MYAQNG---ELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ-LFDEMPIREENF 229
           MYA++     ++ A  VF +    D +S+TALI+GY   G  ++    LF EM    E+ 
Sbjct: 298 MYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEML--NESI 355

Query: 230 VPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARD 289
            PN  T  ++L ACA++   + G  V + +      +   V NAL+ MY++ G + +AR 
Sbjct: 356 KPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARR 415

Query: 290 LFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA 349
           +F  + +R +IS   +  G     D++   M        ++  +  TF S++ A A +G 
Sbjct: 416 VFNQLYERSMIS--CITEGRDAPLDHRIGRM--------DMGISSSTFASLISAAASVGM 465

Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
           L  G+ +HA   K     +   +  SL+ MY++CG ++ A + F+ +  + + SW +MIS
Sbjct: 466 LTKGQQLHAMTLKAGFGSDRF-VSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMIS 524

Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS 469
           GLA HG A++ALSLF  MI  G++P+D+T++ VLSAC+H GL+  G++YF +M +D+ + 
Sbjct: 525 GLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLI 584

Query: 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKH 529
           P+++HY CMVDLL R+GL  EA   +  M +K DA +W +LLGACR H  +E+GE  AK+
Sbjct: 585 PRMEHYACMVDLLARSGLVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEIAAKN 644

Query: 530 LLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLV 589
           ++ELEP +P  YVLLSN+YA AG WD+VA IR+ + D  + K  G S +EV +  HEF  
Sbjct: 645 VIELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRA 704

Query: 590 GDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGL 649
           GD  HP+++ IY  LD +   ++  G+VPDTS VL+DM +E KE  L  HSEK+A+A+GL
Sbjct: 705 GDTSHPRAQDIYGKLDTLVGEIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGL 764

Query: 650 ISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           I+T     IRI KNLRVC +CHSA K +SK   REII RD NRFH  KDG CSC +YW
Sbjct: 765 ITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 117/387 (30%), Positives = 197/387 (50%), Gaps = 14/387 (3%)

Query: 149 GKQIHAHVLKLGL-ESDPFVHTSLINMYAQNGELESARLVFNK-SSLRDAVSYTALITGY 206
           G+ +H  +L+  L + D  V  SL+ +Y++ G + SAR VF+    LRD VS+TA+ +  
Sbjct: 67  GRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCL 126

Query: 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC-AHMGSLELGNWVCSLIEGHGL- 264
           A  G   ++  L  EM   E   +PN  T+  V  AC  H     +G  V  L+   GL 
Sbjct: 127 ARNGAERESLLLIGEML--ESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGLW 184

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
           G+++ V +ALIDM ++ GDL  AR +F+ + ++ V+ W ++I  Y      +EA+ +F  
Sbjct: 185 GTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLD 244

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
            L+   EP+  T  S++ AC  LG++ LG  +H+ +       ++  +   L+DMYAK  
Sbjct: 245 FLEDGFEPDRYTMSSMISACTELGSVRLGLQLHS-LALRMGFASDACVSCGLVDMYAKSN 303

Query: 385 NIKA---AEQVFDGMGYKTLASWNAMISGLAMHG-KADKALSLFSRMIGEGLQPDDITFV 440
             +A   A +VF+ M    + SW A+ISG    G + +K + LF  M+ E ++P+ IT+ 
Sbjct: 304 IEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYS 363

Query: 441 GVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEM 500
            +L AC +    D GRQ    +I+  + +        +V +   +G  +EA  +   +  
Sbjct: 364 SILKACANISDHDSGRQVHAHVIKSNQAAAHTVG-NALVSMYAESGCMEEARRVFNQLYE 422

Query: 501 KPDAAIWTSLLGACRVH--GRLELGES 525
           +   +  T    A   H  GR+++G S
Sbjct: 423 RSMISCITEGRDAPLDHRIGRMDMGIS 449



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 137/272 (50%), Gaps = 10/272 (3%)

Query: 247 GSLELGNWV-CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK-RDVISWNV 304
           G L LG  +   L+ G  L  +  V N+L+ +YS+CG +  AR++F+ +   RD++SW  
Sbjct: 62  GDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTA 121

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           M          +E+L+L  +ML+S + PN  T  +V  AC +   L            + 
Sbjct: 122 MASCLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHAC-FPHELYCLVGGVVLGLVHK 180

Query: 365 QKL--NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALS 422
             L   ++++ ++LIDM A+ G++ +A +VFDG+  KT+  W  +IS       A++A+ 
Sbjct: 181 MGLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVE 240

Query: 423 LFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482
           +F   + +G +PD  T   ++SAC   G + +G Q  +  ++    S      G +VD+ 
Sbjct: 241 IFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCG-LVDMY 299

Query: 483 GRAGL---FDEAEALLKTMEMKPDAAIWTSLL 511
            ++ +    D A  + + M  K D   WT+L+
Sbjct: 300 AKSNIEQAMDYANKVFERMR-KNDVISWTALI 330


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 245/573 (42%), Positives = 353/573 (61%), Gaps = 4/573 (0%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           IL+SC    ++  G+Q+H  +L  GL  D  + T L+++YA  G++  AR +F+    R+
Sbjct: 68  ILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPKRN 127

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
              +  LI  YA  G  + A +L+  M   E    P+  T   VL ACA +  LE G  V
Sbjct: 128 VFLWNVLIRAYAREGPREAAVRLYRGMV--EHGVEPDNFTYPLVLKACAALLDLETGREV 185

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
              + G   G ++ V   ++DMY+KCG +  AR +F+ I  RD + WN MI  Y      
Sbjct: 186 HQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRP 245

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
            EAL L R M  + I P   T +S + A A   AL  G+ +H +  +    L +  L TS
Sbjct: 246 MEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQD-KLKTS 304

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG-LQP 434
           L+DMYAK G ++ A  +F+ +  + L SWNAMI G  MHG AD+AL+LF++M G+  + P
Sbjct: 305 LVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKMKGDAQVTP 364

Query: 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494
           D+ITFVGVLSACNH G+++  +++F  M+  Y I P +QHY C++D+LG  G F+EA  L
Sbjct: 365 DNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDL 424

Query: 495 LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554
           +K M ++PD+ IW +LL  C++H  +ELGE   + L+ELEPE+ G YV LSN+YA +G+W
Sbjct: 425 IKGMSIEPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVHLSNIYAQSGKW 484

Query: 555 DDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKS 614
           +  A +R  + ++G+KK+  CS IE+    H FLVGD  HP+S  IY  L+ ++ L+  +
Sbjct: 485 EKAARVRKLMTNRGLKKILACSWIELKGKTHGFLVGDASHPRSDEIYGELERLEGLMSDA 544

Query: 615 GFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSAT 674
           G+VPD   V +++D++ K   +  HSE+LAIA+GLIST PGT + + KNLRVC +CH   
Sbjct: 545 GYVPDIIPVFHNVDDDEKRNMVRSHSERLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVI 604

Query: 675 KLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           KLIS+I  REII RD NR+HHF +G CSC DYW
Sbjct: 605 KLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 123/443 (27%), Positives = 222/443 (50%), Gaps = 18/443 (4%)

Query: 2   ALPPSS-LTLSPSILHFPPSSDP-----PYKLLQNQPSLALLSKCTNMQNIKQVHSQIIK 55
           ALPP++    SP     PPS++P     P+    +   L       +++  +Q+H +++ 
Sbjct: 35  ALPPNTGFAASPP----PPSTNPRLASSPHAYHHHTSILQSCVASGSLRAGRQLHGRLLV 90

Query: 56  TGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAI 115
           +GL       +KL+++ A    G + +A  +F+ + + N  +WN +IR ++       A+
Sbjct: 91  SGLGPDTVLSTKLVDLYAAC--GQVGHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAV 148

Query: 116 KFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMY 175
           + Y  M+  G  P+ +T+P +LK+CA +  +  G+++H  V       D FV   +++MY
Sbjct: 149 RLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMY 208

Query: 176 AQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNEST 235
           A+ G ++ AR VF+  ++RDAV + ++I  Y   G   +A  L  +M        P  +T
Sbjct: 209 AKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMA--ANGIGPTIAT 266

Query: 236 VVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE 295
           +V+ +SA A   +L  G  +       G G    +  +L+DMY+K G +  AR LFE + 
Sbjct: 267 LVSAVSAAADAAALPRGRELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLM 326

Query: 296 KRDVISWNVMIGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVLPACAYLGALDLGK 354
           KR+++SWN MI GY       EAL LF +M   + + P+++TF+ VL AC + G ++  K
Sbjct: 327 KRELVSWNAMICGYGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAK 386

Query: 355 WIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAM 413
                +   +     V  +T +ID+    G  + A  +  GM  +  +  W A+++G  +
Sbjct: 387 EFFYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKI 446

Query: 414 HGKADKALSLFSRMIGEGLQPDD 436
           H   +       ++I   L+P+D
Sbjct: 447 HKNVELGELALQKLI--ELEPED 467


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 242/562 (43%), Positives = 354/562 (62%), Gaps = 45/562 (8%)

Query: 149 GKQIHAHVLKLGLES-DPFVHTSLINMYAQN--GELESARLVFNKSSLRDAVSYTALITG 205
           G  +HA  L+ G  + D FV T+L+ MYA+   GE+  AR  F+++  RD      ++  
Sbjct: 66  GASLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLAA 125

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           Y +RG + +AR++FD M  R+                        L +W           
Sbjct: 126 YVARGEVAEARKVFDGMSGRD------------------------LVSW----------- 150

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
                 N +I  Y+  GD+  AR++F+    RD  SW+ MI  Y      KEAL L+R+M
Sbjct: 151 ------NTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREM 204

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
             + + P+ ++ +SVL AC+ +GAL +G  +H +++ N  +++ + L T+L+DMYAKCG+
Sbjct: 205 RVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVD-MKLGTALVDMYAKCGD 263

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           I+ + +VF  M  K + +W++MI GLA HG    ALSLFS MI +GLQP++ITF+GVL A
Sbjct: 264 IENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIA 323

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           C H GL++ G++YF++M   + + P+++HYGCMVDLLGRAG  +EA  L+++M  KPD  
Sbjct: 324 CTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPI 383

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
           IW +LLGACR+H  +E+ E     L  L+P   G YVLLSN+YA A  W+ VA +R  + 
Sbjct: 384 IWRTLLGACRIHKNVEIAEEAMAKLKVLDPLADGHYVLLSNIYAQANSWEGVAEMRKTIR 443

Query: 566 DKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLY 625
            + +++VPG SSIE  + VHEF+ GD+ HP+ + IY+ML+E+   L ++G+ P TS VL 
Sbjct: 444 RENIQRVPGRSSIEWENTVHEFVSGDRSHPRIEEIYKMLEEMMDRLRQAGYRPMTSLVLQ 503

Query: 626 DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREI 685
           D+DE+ K+ AL+ HSEKLAIA+GL+ T   +T+RI KNLR C +CHSA KLIS  ++R++
Sbjct: 504 DIDEQSKKRALAEHSEKLAIAFGLLVTPARSTLRITKNLRACEDCHSAIKLISLAYDRKL 563

Query: 686 IARDRNRFHHFKDGNCSCNDYW 707
           I RDRNRFHHF +G CSC DYW
Sbjct: 564 IVRDRNRFHHFSEGQCSCKDYW 585



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 127/233 (54%), Gaps = 4/233 (1%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           GD+  A  +F+  R+ +   W+++I  ++       A++ +  M ++G  P+  +   +L
Sbjct: 161 GDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVL 220

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
            +C+ + A++ G ++H  V    +E D  + T+L++MYA+ G++E++  VF+   ++D +
Sbjct: 221 SACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVL 280

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVC 256
           +++++I G A+ G   DA  LF EM    +   PNE T + VL AC H+G +  G  +  
Sbjct: 281 TWSSMIIGLANHGLGHDALSLFSEMI--SQGLQPNEITFIGVLIACTHVGLVNDGKKYFS 338

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGG 308
           S+ + HG+   +     ++D+  + G + +A +L  S+  K D I W  ++G 
Sbjct: 339 SMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGA 391



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 91/231 (39%), Gaps = 66/231 (28%)

Query: 352 LGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC---------------------------- 383
           LG  +HA   ++     ++ + T+L++MYAK                             
Sbjct: 65  LGASLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLA 124

Query: 384 -----GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGK---------------------- 416
                G +  A +VFDGM  + L SWN MI G A+ G                       
Sbjct: 125 AYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSM 184

Query: 417 ---------ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
                    + +AL L+  M   G+ PD I+ V VLSAC+  G L IG +  +  ++  +
Sbjct: 185 ISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAE-VHRFVESNR 243

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           +   ++    +VD+  + G  + +  +   M +K D   W+S++     HG
Sbjct: 244 VEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVK-DVLTWSSMIIGLANHG 293


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 263/661 (39%), Positives = 389/661 (58%), Gaps = 8/661 (1%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           +HS I+K G  +  F  + LI   A S  G +  A  VFE I   + V+W  I+  +  +
Sbjct: 168 LHSPIVKLGYDSNAFVGAALIN--AYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVEN 225

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVH 168
                ++K    M ++GF+PN YTF   LK+   + A    K +H  +LK     DP V 
Sbjct: 226 GYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVG 285

Query: 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
             L+ +Y Q G++  A  VFN+    D V ++ +I  +   G+ ++A  LF  M  RE  
Sbjct: 286 VGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRM--REAF 343

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288
            VPNE T+ ++L+ CA      LG  +  L+   G   +++V+NALID+Y+KC  +  A 
Sbjct: 344 VVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAV 403

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
            LF  +  ++ +SWN +I GY +  +  +A  +FR+ L++ +   +VTF S L ACA L 
Sbjct: 404 KLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLA 463

Query: 349 ALDLGKWIHAY-IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
           ++DLG  +H   I  N+ K   V++  SLIDMYAKCG+IK A+ VF+ M    +ASWNA+
Sbjct: 464 SMDLGVQVHGLAIKTNNAK--KVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNAL 521

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           ISG + HG   +AL +   M     +P+ +TF+GVLS C++AGL+D G++ F +MI+D+ 
Sbjct: 522 ISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHG 581

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
           I P L+HY CMV LLGR+G  D+A  L++ +  +P   IW ++L A       E     A
Sbjct: 582 IEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSA 641

Query: 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF 587
           + +L++ P++   YVL+SNMYAGA +W +VA+IR  + + G+KK PG S IE    VH F
Sbjct: 642 EEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYF 701

Query: 588 LVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAY 647
            VG   HP  K I  ML+ ++    ++G+VPD + VL DMD+E K+  L  HSE+LA+AY
Sbjct: 702 SVGLSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAY 761

Query: 648 GLISTKPG-TTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDY 706
           GL+        I I+KNLR+C +CHSA K+IS I  R+++ RD NRFHHF  G CSC D+
Sbjct: 762 GLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDH 821

Query: 707 W 707
           W
Sbjct: 822 W 822



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 138/502 (27%), Positives = 231/502 (46%), Gaps = 14/502 (2%)

Query: 20  SSDPPYKLLQNQPSLALLSKCTNMQN---IKQVHSQIIKTGLHNTQFALSKLIEICAVSP 76
           SSD     L +    A+L +C    +    K +H  I+K G     FA + L+     + 
Sbjct: 39  SSDSIIPGLDSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAG 98

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
           F     AL +F+ + E N V +  + +G++        I  Y R+   G   N + F   
Sbjct: 99  FD--KDALNLFDEMPERNNVSFVTLAQGYACQDP----IGLYSRLHREGHELNPHVFTSF 152

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           LK    +        +H+ ++KLG +S+ FV  +LIN Y+  G ++SAR VF     +D 
Sbjct: 153 LKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDI 212

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           V +  +++ Y   GY +D+ +L   M  R   F+PN  T  T L A   +G+ +    V 
Sbjct: 213 VVWAGIVSCYVENGYFEDSLKLLSCM--RMAGFMPNNYTFDTALKASIGLGAFDFAKGVH 270

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
             I       +  V   L+ +Y++ GD+  A  +F  + K DV+ W+ MI  +       
Sbjct: 271 GQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCN 330

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           EA+ LF +M ++ + PN+ T  S+L  CA      LG+ +H  + K    L ++ +  +L
Sbjct: 331 EAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDL-DIYVSNAL 389

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           ID+YAKC  +  A ++F  +  K   SWN +I G    G+  KA S+F   +   +   +
Sbjct: 390 IDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTE 449

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
           +TF   L AC     +D+G Q     I+    + K+     ++D+  + G    A+++  
Sbjct: 450 VTFSSALGACASLASMDLGVQVHGLAIKTNN-AKKVAVSNSLIDMYAKCGDIKFAQSVFN 508

Query: 497 TMEMKPDAAIWTSLLGACRVHG 518
            ME   D A W +L+     HG
Sbjct: 509 EME-TIDVASWNALISGYSTHG 529


>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
 gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
          Length = 941

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 253/682 (37%), Positives = 404/682 (59%), Gaps = 12/682 (1%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGD---LSYALLVFETI 90
           ++++  C N+  +K+   ++I   +  + F  S L+    +S +G    L  A  + E +
Sbjct: 264 MSMVEVCRNLDAVKE--GEMIDARILESPFCSSTLLATSLISLYGQCGILDRAKGLLEHM 321

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            + + V WN ++   + +     AI    RM + GF  N  T+  +L++CA + A+S+G+
Sbjct: 322 YQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACANLEALSQGR 381

Query: 151 QIHAHVLKLGL-ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           +IHA VL  GL + +  V  S+I MY + G+ E+A  VF     +D VS+ A+I      
Sbjct: 382 EIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNAVINASVGN 441

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN-L 268
               DA +LF  M +  E    NE T++++L AC  +  L+L   + +     G G N  
Sbjct: 442 SKFQDALELFHGMEL--EGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNST 499

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY--KEALMLFRQML 326
            V N++++MY++CG L+ A+  F+S+E++ +++W++++  Y  + D   + A   F++M 
Sbjct: 500 AVGNSVVNMYARCGSLLDAKKAFDSLEEKGLVAWSIILAAYAQSKDGPGRRAFKFFQEME 559

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
              I+P +VTF+S L ACA +  L+ G+ +H     +     ++ L  ++I+MY KCG+ 
Sbjct: 560 AEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSP 619

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
             A+ VFD M  K L SWN++I   A +G A +ALS    M+ +G  PD  T V +L   
Sbjct: 620 SDAKLVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGL 679

Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL-LKTMEMKPDAA 505
           +HAGLL+ G ++F + IQD+ + P      C+VDLL R G  D AE L L +   + D  
Sbjct: 680 SHAGLLERGVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPACQADTI 739

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
            W +LL AC+ +G  + G   A+ + ELEP++ G++V+L+N+YA  GRW D + IR  + 
Sbjct: 740 AWMTLLAACKSYGDPQRGIRCAERVFELEPQHSGSFVVLANLYASVGRWSDASRIRKMME 799

Query: 566 DKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLY 625
              +KK PGCS IE+   VHEF+ G+  HP+ + I E L+++   + ++G+VPDT+ V++
Sbjct: 800 RMSVKKEPGCSWIELSGSVHEFISGESKHPKIREICEDLEKLTLRMREAGYVPDTTNVVH 859

Query: 626 DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREI 685
           D++E  KE  LS HSE+LAI +GL+ST+PG TIR+VKNLRVC +CH+ATK+IS +  REI
Sbjct: 860 DVEEGDKEEILSRHSERLAIVFGLMSTRPGETIRVVKNLRVCSDCHAATKIISSVVGREI 919

Query: 686 IARDRNRFHHFKDGNCSCNDYW 707
           + RD +RFHHFK G CSC D+W
Sbjct: 920 VVRDSSRFHHFKHGQCSCGDFW 941



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 140/476 (29%), Positives = 238/476 (50%), Gaps = 11/476 (2%)

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           AL+VF+ I   N   W  ++  +S +     A++ + RM   G  P+   F   L +CA 
Sbjct: 11  ALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVVFVIALDACAA 70

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
              +  G+QIH+ V+  GL S+  +  SL+NMY +  ++  A  VF+   LRD VS+TA+
Sbjct: 71  SGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAM 130

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
           +  YA  G    A +    M    E   PN+ T VT++  CA +  L+LG  +   I   
Sbjct: 131 LAVYAQNGCWSQALECLSRMD--AEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINE 188

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
           GL  +  + NAL+ MY  CG     + +F  + +  V+ W  MI G +    Y+E L++F
Sbjct: 189 GLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVF 248

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
           R+M    ++ N+VT++S++  C  L A+  G+ I A I ++    ++  L TSLI +Y +
Sbjct: 249 RKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILES-PFCSSTLLATSLISLYGQ 307

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
           CG +  A+ + + M  + + +WNAM++  A +G   +A+ L  RM  EG   + +T++ V
Sbjct: 308 CGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSV 367

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
           L AC +   L  GR+    ++    +  ++     ++ + G+ G  + A ++ + M  K 
Sbjct: 368 LEACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKD 427

Query: 503 DA---AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555
           D    A+  + +G  +    LEL      H +ELE      + LLS + A  G  D
Sbjct: 428 DVSWNAVINASVGNSKFQDALEL-----FHGMELEGLRSNEFTLLSLLEACGGLED 478



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 144/507 (28%), Positives = 243/507 (47%), Gaps = 8/507 (1%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +Q+HS ++ +GL +     + L+ +       D+  A  VF+ +   + V W  ++  ++
Sbjct: 78  RQIHSSVVGSGLTSNIIISNSLVNM--YGKCQDVPCAEKVFDGMLLRDVVSWTAMLAVYA 135

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +     A++   RM   G  PN  TF  I+  CAK+  +  G++IH  ++  GLE D  
Sbjct: 136 QNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINEGLEPDGI 195

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           +  +L++MY   G  +  + VF++      + +T +I G +  G  ++   +F +M +  
Sbjct: 196 LGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRKMDL-- 253

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           E    NE T ++++  C ++ +++ G  + + I      S+  +  +LI +Y +CG L +
Sbjct: 254 EGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATSLISLYGQCGILDR 313

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A+ L E + +RDV++WN M+       D  EA+ L R+M       N VT+LSVL ACA 
Sbjct: 314 AKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACAN 373

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
           L AL  G+ IHA +         V++  S+I MY KCG  +AA  VF+ M  K   SWNA
Sbjct: 374 LEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNA 433

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
           +I+    + K   AL LF  M  EGL+ ++ T + +L AC     L + RQ         
Sbjct: 434 VINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGG 493

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
                      +V++  R G   +A+    ++E K   A W+ +L A     +   G   
Sbjct: 494 FGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLEEKGLVA-WSIILAA-YAQSKDGPGRRA 551

Query: 527 AKHLLELEPE--NPGAYVLLSNMYAGA 551
            K   E+E E   PG    +S + A A
Sbjct: 552 FKFFQEMEAEGIKPGEVTFVSALDACA 578



 Score =  185 bits (469), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 185/345 (53%), Gaps = 5/345 (1%)

Query: 174 MYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
           MY +   +  A +VF+  S ++  S+T ++  Y+  G+  +A +LF  M  + E   P++
Sbjct: 1   MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRM--QWEGTRPDK 58

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
              V  L ACA  G L+ G  + S + G GL SN+ ++N+L++MY KC D+  A  +F+ 
Sbjct: 59  VVFVIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDG 118

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
           +  RDV+SW  M+  Y     + +AL    +M    ++PN VTF++++  CA L  LDLG
Sbjct: 119 MLLRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLG 178

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAM 413
           + IH  I     + + + L  +L+ MY  CG+    + VF  MG  ++  W  MI+G + 
Sbjct: 179 RKIHHRIINEGLEPDGI-LGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQ 237

Query: 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQ 473
           +G+ ++ L +F +M  EG++ +++T++ ++  C +   +  G +  +A I +        
Sbjct: 238 NGQYEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEG-EMIDARILESPFCSSTL 296

Query: 474 HYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
               ++ L G+ G+ D A+ LL+ M  + D   W +++ AC  +G
Sbjct: 297 LATSLISLYGQCGILDRAKGLLEHMYQR-DVVAWNAMVTACAQNG 340



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 108/237 (45%), Gaps = 40/237 (16%)

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
           MY KC  +  A  VFDG+  K + SW  M++  + +G   +AL LF+RM  EG +PD + 
Sbjct: 1   MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVV 60

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMI---------------------QDYKISPKL----- 472
           FV  L AC  +G LD GRQ  ++++                     QD   + K+     
Sbjct: 61  FVIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGML 120

Query: 473 ----QHYGCMVDLLGRAGLFDEAEALLKTME---MKPDAAIWTSLLGACRVHGRLELGES 525
                 +  M+ +  + G + +A   L  M+   +KP+   + +++  C     L+LG  
Sbjct: 121 LRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRK 180

Query: 526 VAKHLLE--LEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM----KKVPGCS 576
           +   ++   LEP+      L+ +MY   G +DD+ ++ +R+    +      + GCS
Sbjct: 181 IHHRIINEGLEPDGILGNALV-HMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCS 236


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 254/605 (41%), Positives = 374/605 (61%), Gaps = 16/605 (2%)

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
           SL +SP+ + +   +    G++        +LK C    ++ E K++HAH+LKLGL  D 
Sbjct: 14  SLPNSPLQSSELNAKFNEQGWLS-------LLKRC---KSMEEFKKVHAHILKLGLFYDS 63

Query: 166 FVHTSLINMYAQN--GELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
           F  ++L+   A +  G +E A  +F +     +  Y  +I G  +   L++A  L+ EM 
Sbjct: 64  FCGSNLVASCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEML 123

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
             E    P+  T   VL AC+ + +L+ G  + + +   GL  ++ V N LI MY KCG 
Sbjct: 124 --ERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFNAGLEVDVFVQNGLISMYGKCGA 181

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL-SVLP 342
           +  A  +FE ++++ V SW+ +IG +     + E LML   M +      + + L S L 
Sbjct: 182 IEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSREGRHRAEESILVSALS 241

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           AC +LG+ +LG+ IH  + +N  +LN V + TSLIDMY KCG+++    VF  M +K   
Sbjct: 242 ACTHLGSPNLGRCIHGILLRNISELN-VVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRY 300

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           S+  MI+GLA+HG+  +AL +FS M+ EGL PDD+ +VGVLSAC+HAGL+  G Q FN M
Sbjct: 301 SYTVMIAGLAIHGRGREALRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRM 360

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
             ++ I P +QHYGCMVDL+GRAG+  EA  L+K+M +KP+  +W SLL AC+VH  LE+
Sbjct: 361 QFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEI 420

Query: 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582
           GE  A ++ +L   NPG Y++L+NMYA A +W +VA IRT + +K + + PG S +E   
Sbjct: 421 GEIAADNIFKLNKHNPGDYLVLANMYARAQKWANVARIRTEMVEKNLVQTPGFSLVEANR 480

Query: 583 VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEK 642
            V++F+  DK  PQ + IY+M+ +++  L+  G+ PD S+VL D+DE+ K   L HHS+K
Sbjct: 481 NVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQK 540

Query: 643 LAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCS 702
           LAIA+ LI T  G+ +RI +NLR+C +CH+ TK IS I+ REI  RD NRFHHFKDG CS
Sbjct: 541 LAIAFALIQTSEGSPVRISRNLRMCNDCHTYTKFISVIYEREITVRDSNRFHHFKDGTCS 600

Query: 703 CNDYW 707
           C DYW
Sbjct: 601 CKDYW 605



 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 132/398 (33%), Positives = 209/398 (52%), Gaps = 2/398 (0%)

Query: 18  PPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF 77
           P  S         Q  L+LL +C +M+  K+VH+ I+K GL    F  S L+  CA+S +
Sbjct: 19  PLQSSELNAKFNEQGWLSLLKRCKSMEEFKKVHAHILKLGLFYDSFCGSNLVASCALSRW 78

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G + YA  +F  I EP    +N +IRG+  S     A+  YV M+  G  P+ +T+PF+L
Sbjct: 79  GSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVL 138

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
           K+C+ + A+ EG QIHAHV   GLE D FV   LI+MY + G +E A +VF +   +   
Sbjct: 139 KACSLLVALKEGVQIHAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVA 198

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           S++++I  +AS     +   L  +M  RE      ES +V+ LSAC H+GS  LG  +  
Sbjct: 199 SWSSIIGAHASVEMWHECLMLLGDMS-REGRHRAEESILVSALSACTHLGSPNLGRCIHG 257

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
           ++  +    N+ V  +LIDMY KCG L K   +F+++  ++  S+ VMI G       +E
Sbjct: 258 ILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGRE 317

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           AL +F  ML+  + P+DV ++ VL AC++ G +  G      +   H     +  +  ++
Sbjct: 318 ALRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRMQFEHMIKPTIQHYGCMV 377

Query: 378 DMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMH 414
           D+  + G +K A  +   M  K     W +++S   +H
Sbjct: 378 DLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVH 415


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 247/626 (39%), Positives = 372/626 (59%), Gaps = 25/626 (3%)

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           A  +F+ + + + + WN++I G+  +      +  Y +M+  G   +  T   +L  CA 
Sbjct: 204 AFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
              +S GK +H+  +K   E       +L++MY++ G+L+ A  VF K   R+ VS+T++
Sbjct: 264 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 323

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
           I GY   G  D A +L  +M   +E    +   + ++L ACA  GSL+ G  V   I+ +
Sbjct: 324 IAGYTRDGRSDGAIKLLQQM--EKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN 381

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
            + SNL V NAL+DMY+KCG +  A  +F ++  +D+ISWN MIG               
Sbjct: 382 NMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIG--------------- 426

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
                  ++P+  T   VLPACA L AL+ GK IH YI +N    ++  +  +L+D+Y K
Sbjct: 427 ------ELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYS-SDRHVANALVDLYVK 479

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
           CG +  A  +FD +  K L SW  MI+G  MHG  ++A++ F+ M   G++PD+++F+ +
Sbjct: 480 CGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISI 539

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
           L AC+H+GLL+ G ++F  M  D+ I PKL+HY CMVDLL R G   +A   ++T+ + P
Sbjct: 540 LYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAP 599

Query: 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562
           DA IW +LL  CR +  +EL E VA+ + ELEPEN G YVLL+N+YA A +W++V  +R 
Sbjct: 600 DATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLRE 659

Query: 563 RLNDKGMKKVPGCSSIEVGSVVHEFLVGDK-VHPQSKHIYEMLDEIDALLEKSGFVPDTS 621
           ++  +G++K PGCS IE+   V+ F+ G+   HP SK+I  +L ++   +++ G  P T 
Sbjct: 660 KIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTK 719

Query: 622 EVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIF 681
             L + DE  KE AL  HSEKLA+A+GL++  P  TIR+ KNLRVCG+CH   K +SK  
Sbjct: 720 YALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKET 779

Query: 682 NREIIARDRNRFHHFKDGNCSCNDYW 707
            REI+ RD NRFHHFKDG CSC  +W
Sbjct: 780 RREIVLRDPNRFHHFKDGYCSCRGFW 805



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/416 (29%), Positives = 210/416 (50%), Gaps = 33/416 (7%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           +++L  C N   +   K VHS  IK+         + L+++   S  GDL  AL VFE +
Sbjct: 255 ISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDM--YSKCGDLDGALRVFEKM 312

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            E N V W ++I G++       AIK   +M   G   +      IL +CA+  ++  GK
Sbjct: 313 GERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGK 372

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            +H ++    +ES+ FV  +L++MYA+ G +E+A  VF+   ++D +S+  +I       
Sbjct: 373 DVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIG------ 426

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
                               P+  T+  VL ACA + +LE G  +   I  +G  S+ HV
Sbjct: 427 -----------------ELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHV 469

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            NAL+D+Y KCG L  AR LF+ I  +D++SW VMI GY       EA+  F +M  + I
Sbjct: 470 ANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGI 529

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN-NVSLWTSLIDMYAKCGNIKAA 389
           EP++V+F+S+L AC++ G L+ G W   YI KN   +   +  +  ++D+ ++ GN+  A
Sbjct: 530 EPDEVSFISILYACSHSGLLEQG-WRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKA 588

Query: 390 EQVFDGMGYKTLAS-WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
            +  + +     A+ W A++ G   +   + A  +  R+    L+P++  +  +L+
Sbjct: 589 YEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVF--ELEPENSGYYVLLA 642



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 144/495 (29%), Positives = 228/495 (46%), Gaps = 83/495 (16%)

Query: 28  LQNQPSLALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALS-KLIEICAVSPFGDLSYA 83
           L+ +   ++L  C  +++    K+VHS IIK+       AL  KL+   A    GDL   
Sbjct: 97  LETKTYSSVLQLCAGLKSFTDGKKVHS-IIKSNSVGVDEALGLKLVSFYATC--GDLKEG 153

Query: 84  LLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKI 143
             VF+T+ + N  +WN                                   F++   AKI
Sbjct: 154 RRVFDTMEKKNVYLWN-----------------------------------FMVSEYAKI 178

Query: 144 SAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALI 203
               E   +   +++ G+E                   ESA  +F+K   RD +S+ ++I
Sbjct: 179 GDFKESICLFKIMVEKGIEGK---------------RPESAFELFDKLCDRDVISWNSMI 223

Query: 204 TGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG 263
           +GY S G  +    ++ +M     +   + +T+++VL  CA+ G+L LG  V SL     
Sbjct: 224 SGYVSNGLTERGLGIYKQMMYLGIDV--DLATIISVLVGCANSGTLSLGKAVHSLAIKSS 281

Query: 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFR 323
               ++ +N L+DMYSKCGDL  A  +FE + +R+V+SW  MI GYT       A+ L +
Sbjct: 282 FERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQ 341

Query: 324 QMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383
           QM +  ++ + V   S+L ACA  G+LD GK +H YI  N+ + +N+ +  +L+DMYAKC
Sbjct: 342 QMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNME-SNLFVCNALMDMYAKC 400

Query: 384 GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
           G+++AA  VF  M  K + SWN                     MIGE L+PD  T   VL
Sbjct: 401 GSMEAANSVFSTMVVKDIISWNT--------------------MIGE-LKPDSRTMACVL 439

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
            AC     L+ G++    ++++   S        +VDL  + G+   A  L   +  K D
Sbjct: 440 PACASLSALERGKEIHGYILRN-GYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSK-D 497

Query: 504 AAIWTSLLGACRVHG 518
              WT ++    +HG
Sbjct: 498 LVSWTVMIAGYGMHG 512



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 107/398 (26%), Positives = 180/398 (45%), Gaps = 70/398 (17%)

Query: 199 YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           Y A I  +   G L++A +L       E        T  +VL  CA + S   G  V S+
Sbjct: 69  YNAKILHFCQLGDLENAMELICMCKKSE----LETKTYSSVLQLCAGLKSFTDGKKVHSI 124

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
           I+ + +G +  +   L+  Y+ CGDL + R +F+++EK++V  WN M+  Y    D+KE+
Sbjct: 125 IKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKES 184

Query: 319 LMLFRQMLQSNIE---------------PNDV---------------------------- 335
           + LF+ M++  IE                 DV                            
Sbjct: 185 ICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMY 244

Query: 336 --------TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
                   T +SVL  CA  G L LGK +H+   K+  +   ++   +L+DMY+KCG++ 
Sbjct: 245 LGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFE-RRINFSNTLLDMYSKCGDLD 303

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
            A +VF+ MG + + SW +MI+G    G++D A+ L  +M  EG++ D +    +L AC 
Sbjct: 304 GALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACA 363

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM--------- 498
            +G LD G+   +  I+   +   L     ++D+  + G  + A ++  TM         
Sbjct: 364 RSGSLDNGKDVHD-YIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWN 422

Query: 499 ----EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
               E+KPD+     +L AC     LE G+ +  ++L 
Sbjct: 423 TMIGELKPDSRTMACVLPACASLSALERGKEIHGYILR 460



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 118/288 (40%), Gaps = 57/288 (19%)

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
           V  +N  I  +    D + A+ L     +S +E    T+ SVL  CA L +   GK +H+
Sbjct: 66  VTDYNAKILHFCQLGDLENAMELICMCKKSELETK--TYSSVLQLCAGLKSFTDGKKVHS 123

Query: 359 YIDKNHQKLN------------------------------NVSLWTSLIDMYAKCGNIK- 387
            I  N   ++                              NV LW  ++  YAK G+ K 
Sbjct: 124 IIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKE 183

Query: 388 -------------------AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMI 428
                              +A ++FD +  + + SWN+MISG   +G  ++ L ++ +M+
Sbjct: 184 SICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMM 243

Query: 429 GEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488
             G+  D  T + VL  C ++G L +G+   +  I+      ++     ++D+  + G  
Sbjct: 244 YLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS-SFERRINFSNTLLDMYSKCGDL 302

Query: 489 DEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536
           D A  + + M  + +   WTS++      GR    +   K L ++E E
Sbjct: 303 DGALRVFEKMGER-NVVSWTSMIAGYTRDGR---SDGAIKLLQQMEKE 346


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 261/661 (39%), Positives = 396/661 (59%), Gaps = 10/661 (1%)

Query: 50  HSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSS 109
           H   +K GL       S L+++   S  G L  A ++F+T  E N + WN++I G+S   
Sbjct: 322 HGLALKLGLCGELKVNSSLLDM--YSKCGYLCEARVLFDT-NEKNVISWNSMIGGYSKDR 378

Query: 110 SPVVAIKFYVRMILSGFVP-NTYTFPFILKSCAKISAISEGKQIHAHVLKLG-LESDPFV 167
               A +   +M +   V  N  T   +L  C +     + K+IH + L+ G ++SD  V
Sbjct: 379 DFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELV 438

Query: 168 HTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREE 227
             + +  YA+ G L  A  VF     +   S+ ALI G+   G+   A  L+  + +R  
Sbjct: 439 ANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLY--LLMRGS 496

Query: 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA 287
              P+  T+ ++LSACA + SL  G  +   +  +G   +  +  +L+ +Y +CG ++ A
Sbjct: 497 GLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLA 556

Query: 288 RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347
           +  F+++E+++++ WN MI G++      +AL +F QML S I P++++ +  L AC+ +
Sbjct: 557 KLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQV 616

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWT-SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
            AL LGK +H +  K+H  L   S  T SLIDMYAKCG ++ ++ +FD +  K   +WN 
Sbjct: 617 SALRLGKELHCFAVKSH--LTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNV 674

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
           +I+G  +HG   KA+ LF  M   G +PD +TF+ +L+ACNHAGL+  G +Y   M   +
Sbjct: 675 LITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLF 734

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
            I PKL+HY C+VD+LGRAG  +EA  L+  +  KPD+ IW+SLL +CR +  L++GE V
Sbjct: 735 GIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKV 794

Query: 527 AKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHE 586
           A  LLEL P+    YVL+SN YA  G+WD+V  +R R+ + G++K  GCS IE+G  V  
Sbjct: 795 ANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSR 854

Query: 587 FLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIA 646
           FLVGD+   QS  I +   E++  + K G+ PDTS VL++++E+ K   L +HSEKLAI+
Sbjct: 855 FLVGDESLLQSMKIQQTWIELEKKINKIGYKPDTSCVLHELEEDEKIKILRNHSEKLAIS 914

Query: 647 YGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDY 706
           +GL++T  GTT+R+ KNLR+C +CH+A KL+SKI  REII RD  RFHHFK+G CSC DY
Sbjct: 915 FGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKIDKREIIVRDNKRFHHFKNGFCSCGDY 974

Query: 707 W 707
           W
Sbjct: 975 W 975



 Score =  253 bits (645), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 201/669 (30%), Positives = 316/669 (47%), Gaps = 79/669 (11%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLH--NTQFALSKLIEICAV--SPFGDLSYALLVFE 88
           LL  C   +NI   +++H+  I T  H  N    +++L+ + ++  SP+     + LVF 
Sbjct: 99  LLQLCGEYKNIEIGRKIHN-FISTSPHFQNDVVLITRLVTMYSICDSPYD----SCLVFN 153

Query: 89  TIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI-LSGFVPNTYTFPFILKSCAKISAIS 147
             R  N  +WN ++ G+  +S    A+  +V MI L+ FVP+ +T P ++K+C  +  + 
Sbjct: 154 ASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVR 213

Query: 148 EGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA 207
            G+ +H   LK  + SD FV  +LI MY + G +ESA  VF+K   R+ VS+ +++    
Sbjct: 214 LGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACL 273

Query: 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
             G  +++  LF  +   +E  +P+ +T+VTV+  CA  G + LG     L    GL   
Sbjct: 274 ENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGE 333

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM-L 326
           L V ++L+DMYSKCG L +AR LF++ EK +VISWN MIGGY+   D++ A  L R+M +
Sbjct: 334 LKVNSSLLDMYSKCGYLCEARVLFDTNEK-NVISWNSMIGGYSKDRDFRGAFELLRKMQM 392

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
           +  ++ N+VT L+VLP C         K IH Y  ++    ++  +  + +  YAKCG++
Sbjct: 393 EDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSL 452

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
             AE VF GM  K ++SWNA+I G   +G   KAL L+  M G GL+PD  T   +LSAC
Sbjct: 453 HYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSAC 512

Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGC--MVDLLGRAGLFDEAEALLKTMEMK--- 501
                L  G++   +M+++     +L  + C  +V L  + G    A+     ME K   
Sbjct: 513 ARLKSLSCGKEIHGSMLRN---GFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLV 569

Query: 502 -------------------------------PDAAIWTSLLGACRVHGRLELGE-----S 525
                                          PD       LGAC     L LG+     +
Sbjct: 570 CWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFA 629

Query: 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVH 585
           V  HL     E+      L +MYA  G  +    I  R++ KG          EV   V 
Sbjct: 630 VKSHL----TEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKG----------EVTWNV- 674

Query: 586 EFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAI 645
             + G  +H   +   E+       ++ +GF PD+   +  +      G ++   E L  
Sbjct: 675 -LITGYGIHGHGRKAIELFKS----MQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQ 729

Query: 646 AYGLISTKP 654
              L   KP
Sbjct: 730 MQSLFGIKP 738


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/582 (39%), Positives = 364/582 (62%), Gaps = 4/582 (0%)

Query: 126 FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR 185
             P    +  I+ +CA+   ++  + IHAH+ +  L  D F+  SLI+MY + G +  AR
Sbjct: 56  LAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDAR 115

Query: 186 LVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH 245
            VF+K   RD VS+T LI GYA      +A  L  +M      F PN  T  ++L A   
Sbjct: 116 HVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDM--LRARFRPNGFTFTSLLKATGA 173

Query: 246 MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVM 305
            G   +G  + +L   +    +++V +AL+DMY++C  +  A  +F+ +  ++ +SWN +
Sbjct: 174 CGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNAL 233

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365
           I G+   +D +  LM F +M ++       T+ S+  A A +GAL+ G+W+HA++ K+ Q
Sbjct: 234 IAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQ 293

Query: 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
           KL    +  +++ MYAK G++  A +VFD M  + L +WN M++ LA +G   +A++ F 
Sbjct: 294 KLTAF-VGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFE 352

Query: 426 RMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485
            +   G+Q + ITF+ VL+AC+H GL+  G+ YF+ M++DY + P++ HY   VDLLGRA
Sbjct: 353 EIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFD-MMKDYNVQPEIDHYVSFVDLLGRA 411

Query: 486 GLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545
           GL  EA   +  M M+P AA+W +LLGACR+H   ++G+  A H+ EL+P++ G  VLL 
Sbjct: 412 GLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLY 471

Query: 546 NMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLD 605
           N+YA  G+W+D A +R  +   G+KK P CS +++ + VH F+  D  HP+S  IY M +
Sbjct: 472 NIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWE 531

Query: 606 EIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLR 665
           EI+  ++K+G+VP+T+ VL  ++E+ +E  L +HSEK+A+A+ LI+   G +IRI+KN+R
Sbjct: 532 EINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGASIRIMKNIR 591

Query: 666 VCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +CG+CHSA K +SK+F REI+ RD NRFHHF +G+CSC DYW
Sbjct: 592 ICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 633



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 115/389 (29%), Positives = 202/389 (51%), Gaps = 13/389 (3%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ++++ C   +N+   + +H+ + ++ L    F L+ LI +      G +S A  VF+ + 
Sbjct: 65  SIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHM--YCKCGAVSDARHVFDKMP 122

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             + V W  +I G++ +  P  AI     M+ + F PN +TF  +LK+       S G+Q
Sbjct: 123 SRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQ 182

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +HA  +K   + D +V ++L++MYA+  +++ A +VF++   ++ VS+ ALI G+A +  
Sbjct: 183 MHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKAD 242

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
            +     F EM  +   F     T  ++ SA A +G+LE G WV + +   G      V 
Sbjct: 243 GETTLMKFAEM--QRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVG 300

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N ++ MY+K G +V AR +F+ ++KRD+++WN M+         KEA+  F ++ +  I+
Sbjct: 301 NTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQ 360

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYID--KNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
            N +TFLSVL AC++ G +  GK    Y D  K++     +  + S +D+  + G +K A
Sbjct: 361 LNQITFLSVLTACSHGGLVKEGK---HYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEA 417

Query: 390 EQ-VFDGMGYKTLASWNAMISGLAMHGKA 417
              VF      T A W A++    MH  A
Sbjct: 418 LIFVFKMPMEPTAAVWGALLGACRMHKNA 446


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 394/676 (58%), Gaps = 42/676 (6%)

Query: 67  KLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGF 126
           KLI+ C  S  GDL  AL +F+ I EP+   W  +I GH+    P  AI  Y  ++    
Sbjct: 16  KLIKTCLNS--GDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNV 73

Query: 127 VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARL 186
            P+ +    + K+CA    +   K+IH   ++ G   D  +  +LI+M+ +   +  AR 
Sbjct: 74  RPDKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARC 133

Query: 187 VFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHM 246
           VF+   ++D VS+T++   Y + G       LF EM +       N  TV ++L ACA  
Sbjct: 134 VFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGL--NGIRANSLTVSSILPACADY 191

Query: 247 GSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMI 306
             ++LG  V   I  + +  N++V++AL++MY+    L +AR +F+S+  RD++SWNVM+
Sbjct: 192 --IKLGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVML 249

Query: 307 GGYTHTSDYKEALMLFRQMLQ-----------------------------------SNIE 331
             Y    +Y+  L LF QM +                                   S I+
Sbjct: 250 TAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIK 309

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           PN +T +S LP C  L +L  GK IH Y+ + H  + +V++ T+L+ +YAKCG+++ +  
Sbjct: 310 PNRITIVSALPGCTNLESLRGGKEIHGYVFR-HWFIEDVTITTALVLLYAKCGDLELSRH 368

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VF+ M  K + +WN MI   +MHGK  ++L LF++M+  G++P+ +TF+GVLS C+H+ L
Sbjct: 369 VFNTMPRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQL 428

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
            D G   FN+M  ++ I+P   HY CMVD+L RAG  +EA   ++ M ++P AA W +LL
Sbjct: 429 ADEGLLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGALL 488

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
           GACRV+  +ELG   A  L E+EP+N G YVLLSN+   A +W + + IR  + DKG+ K
Sbjct: 489 GACRVYKNVELGTLAASQLFEIEPDNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGLAK 548

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
            PG S ++V + V+ F+ GDK + Q   IY  LDEID  +   G+ P+T  VL ++D+E 
Sbjct: 549 TPGRSWVQVKNKVYSFVTGDKSNEQKDMIYRFLDEIDEKMRLDGYQPNTDFVLQNVDQEQ 608

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           +E  L  HSE+LA+A+G++++   TT+R+ KNLR+CG+CH+A KLI+KI   +II RD  
Sbjct: 609 REETLCSHSERLAVAFGILNSSGKTTVRVFKNLRICGDCHNAIKLIAKIVGMQIIVRDSL 668

Query: 692 RFHHFKDGNCSCNDYW 707
           RFHHF+DG C+CND+W
Sbjct: 669 RFHHFRDGYCTCNDFW 684



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 189/404 (46%), Gaps = 52/404 (12%)

Query: 156 VLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDA 215
           V KL     P     LI     +G+L+ A  +F+K    D  ++T LI+G+   G+   A
Sbjct: 2   VSKLPANLQPCQSIKLIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKA 61

Query: 216 RQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALI 275
             ++  +  R  N  P++  +++V  ACA  G L +   +       G   +L + NALI
Sbjct: 62  IDIYSTLLSR--NVRPDKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALI 119

Query: 276 DMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV 335
           DM+ KC  +  AR +F+ +  +DV+SW  M   Y +    ++ ++LFR+M  + I  N +
Sbjct: 120 DMFGKCKFVNGARCVFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSL 179

Query: 336 TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
           T  S+LPACA    + LG+ +H +I +N  +  NV + ++L++MYA    +K A  VFD 
Sbjct: 180 TVSSILPACA--DYIKLGREVHGFILRNEME-GNVYVSSALVNMYASSLGLKQARLVFDS 236

Query: 396 MGYKTL-----------------------------------ASWNAMISGLAMHGKADKA 420
           M ++ +                                   ASWNA ISG   +G+ + A
Sbjct: 237 MYHRDIVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELA 296

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ-----YFNAMIQDYKISPKLQHY 475
           L +  +M   G++P+ IT V  L  C +   L  G++     + +  I+D  I+  L   
Sbjct: 297 LGILCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTAL--- 353

Query: 476 GCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
              V L  + G  + +  +  TM  K D   W +++ A  +HG+
Sbjct: 354 ---VLLYAKCGDLELSRHVFNTMPRK-DVVAWNTMIMANSMHGK 393


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 264/677 (38%), Positives = 395/677 (58%), Gaps = 10/677 (1%)

Query: 35   ALLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
            +LLS C ++  +    Q+HS  IK G+         L+++   S   D+  A   F    
Sbjct: 367  SLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDL--YSKCADVETAHKFFLXTE 424

Query: 92   EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
              N V+WN ++  +    +   + + + +M + G +PN +T+P IL++C  + A+  G+Q
Sbjct: 425  TENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQ 484

Query: 152  IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
            IH HV+K G + + +V + LI+MYA+ G+L  A  +  +    D VS+TA+I GY     
Sbjct: 485  IHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDM 544

Query: 212  LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
              +A QLF+EM  R   F  +     + +SACA + +L  G  + +     G G++L + 
Sbjct: 545  FSEALQLFEEMEYRGIQF--DNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSIN 602

Query: 272  NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
            NALI +Y++CG + +A   FE I  ++ ISWN ++ G   +  ++EAL +F +ML++  E
Sbjct: 603  NALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAE 662

Query: 332  PNDVTFLSVLPACAYLGALDLGKWIHAYIDKN-HQKLNNVSLWTSLIDMYAKCGNIKAAE 390
             N  T+ S + A A L  +  G+ IH+ + K  +     VS   SLI +YAK G+I  A 
Sbjct: 663  VNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVS--NSLISLYAKSGSISDAW 720

Query: 391  QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
            + F+ M  + + SWNAMI+G + HG   +AL LF  M   G+ P+ +TFVGVLSAC+H G
Sbjct: 721  REFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIG 780

Query: 451  LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
            L+  G  YF +M + + + PK +HY C+VDLLGRAG  D A   +K M +  DA IW +L
Sbjct: 781  LVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTL 840

Query: 511  LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
            L AC +H  +E+GE  A HLLELEPE+   YVL+SN+YA + +W      R  + D G+K
Sbjct: 841  LSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDXGVK 900

Query: 571  KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
            K PG S IEV + VH F  GDK+HP +  IYE +  ++    + G+V D+  +L + ++ 
Sbjct: 901  KEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLLNESEQG 960

Query: 631  WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
             K+     HSEKLAIA+GL+S      IR++KNLRVC +CH+  K +SKI NR II RD 
Sbjct: 961  QKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSIIVRDA 1020

Query: 691  NRFHHFKDGNCSCNDYW 707
            +RFHHF  G CSC D+W
Sbjct: 1021 HRFHHFDGGVCSCKDFW 1037



 Score =  233 bits (593), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 155/491 (31%), Positives = 243/491 (49%), Gaps = 7/491 (1%)

Query: 46  IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           +KQVHS+    G  ++    + LI++   S  G +  A  VF  I   + V W  +I G 
Sbjct: 179 VKQVHSRTFYYGFDSSPLVANLLIDL--YSKNGYIESAKKVFNCICMKDIVTWVAMISGL 236

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
           S +     AI  +  M  S   P  Y    +L +  KI     G+Q+H  V+K G  S+ 
Sbjct: 237 SQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSET 296

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           +V   L+ +Y+++ +L SA  +F+  + RD VSY +LI+G   +G+ D A +LF +M  +
Sbjct: 297 YVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKM--Q 354

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
            +   P+  TV ++LSACA +G+L  G  + S     G+ +++ +  +L+D+YSKC D+ 
Sbjct: 355 RDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVE 414

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
            A   F   E  +++ WNVM+  Y    +  ++  +FRQM    + PN  T+ S+L  C 
Sbjct: 415 TAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCT 474

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
            LGAL LG+ IH ++ K   +L NV + + LIDMYAK G +  A ++   +    + SW 
Sbjct: 475 SLGALYLGEQIHTHVIKTGFQL-NVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWT 533

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
           AMI+G   H    +AL LF  M   G+Q D+I F   +SAC     L  G+Q  +A    
Sbjct: 534 AMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQ-IHAQSYA 592

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
                 L     ++ L  R G   EA    + +  K + + W SL+      G  E    
Sbjct: 593 AGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNIS-WNSLVSGLAQSGYFEEALQ 651

Query: 526 VAKHLLELEPE 536
           V   +L  E E
Sbjct: 652 VFVRMLRTEAE 662



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 140/493 (28%), Positives = 237/493 (48%), Gaps = 15/493 (3%)

Query: 31  QPSLALLSKCT---NMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVF 87
           Q  L LL  C    ++    ++H +I K+G       +  L++       GD   A+ VF
Sbjct: 59  QNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVD--NYFRHGDQHGAVKVF 116

Query: 88  ETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS-AI 146
           +     +   WN +I       S       + RM+  G  PN YTF  +LK+C     A 
Sbjct: 117 DENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAF 176

Query: 147 SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGY 206
           +  KQ+H+     G +S P V   LI++Y++NG +ESA+ VFN   ++D V++ A+I+G 
Sbjct: 177 NYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGL 236

Query: 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS 266
           +  G  ++A  LF +M   E    P    + +VLSA   +   ELG  +  L+   G  S
Sbjct: 237 SQNGLEEEAILLFCDMHASE--IFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHS 294

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML 326
             +V N L+ +YS+   L+ A  +F ++  RD +S+N +I G         AL LF +M 
Sbjct: 295 ETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQ 354

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
           +  ++P+ +T  S+L ACA +GAL  G  +H++  K      ++ L  SL+D+Y+KC ++
Sbjct: 355 RDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSA-DIILEGSLLDLYSKCADV 413

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
           + A + F     + +  WN M+           +  +F +M  EG+ P+  T+  +L  C
Sbjct: 414 ETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTC 473

Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGC--MVDLLGRAGLFDEAEALLKTMEMKPDA 504
              G L +G Q    +I   K   +L  Y C  ++D+  + G    A  +L+ +  + D 
Sbjct: 474 TSLGALYLGEQIHTHVI---KTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP-EDDV 529

Query: 505 AIWTSLLGACRVH 517
             WT+++     H
Sbjct: 530 VSWTAMIAGYVQH 542



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 131/479 (27%), Positives = 219/479 (45%), Gaps = 46/479 (9%)

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
           G   N   + ++L+ C    ++ E  ++H  + K G + +P +  SL++ Y ++G+   A
Sbjct: 53  GVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGA 112

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
             VF+++S R   S+  +I  + ++        LF  M    E   PN  T   VL AC 
Sbjct: 113 VKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRML--AEGITPNGYTFAGVLKACV 170

Query: 245 HMGSLELG--NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
             G +       V S    +G  S+  V N LID+YSK G +  A+ +F  I  +D+++W
Sbjct: 171 G-GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTW 229

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
             MI G +     +EA++LF  M  S I P      SVL A   +   +LG+ +H  + K
Sbjct: 230 VAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIK 289

Query: 363 --NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
              H +     +   L+ +Y++   + +AE++F  M  +   S+N++ISGL   G +D+A
Sbjct: 290 WGFHSE---TYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRA 346

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
           L LF++M  + L+PD IT   +LSAC   G L  G Q  +  I+   +S  +   G ++D
Sbjct: 347 LELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKA-GMSADIILEGSLLD 405

Query: 481 LLGRAG---------LFDEAE----------------------ALLKTMEMK---PDAAI 506
           L  +           L  E E                       + + M+M+   P+   
Sbjct: 406 LYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFT 465

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPE-NPGAYVLLSNMYAGAGRWDDVATIRTRL 564
           + S+L  C   G L LGE +  H+++   + N     +L +MYA  G+      I  RL
Sbjct: 466 YPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRL 524



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 142/348 (40%), Gaps = 45/348 (12%)

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
           + E     N    + +L  C   GSL     +   I   G      + ++L+D Y + GD
Sbjct: 49  MEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGD 108

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
              A  +F+    R V SWN MI  +       +   LFR+ML   I PN  TF  VL A
Sbjct: 109 QHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKA 168

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS------LIDMYAKCGNIKAAEQVFDGMG 397
           C        G     Y+ + H +       +S      LID+Y+K G I++A++VF+ + 
Sbjct: 169 CVG------GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCIC 222

Query: 398 YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
            K + +W AMISGL+ +G  ++A+ LF  M    + P       VLSA     L ++G Q
Sbjct: 223 MKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQ 282

Query: 458 YF---------------NAMIQDYKISPKL---------------QHYGCMVDLLGRAGL 487
                            N ++  Y  S KL                 Y  ++  L + G 
Sbjct: 283 LHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGF 342

Query: 488 FDEAEALLKTME---MKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
            D A  L   M+   +KPD     SLL AC   G L  G  +  H ++
Sbjct: 343 SDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIK 390



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 20/209 (9%)

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
           + L   M +  +  N   +L +L  C   G+L     +H  I K+      + L  SL+D
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPL-LIDSLVD 101

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
            Y + G+   A +VFD    +++ SWN MI          +   LF RM+ EG+ P+  T
Sbjct: 102 NYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYT 161

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG---------CMVDLLGRAGLFD 489
           F GVL AC      DI   Y        ++  +  +YG          ++DL  + G  +
Sbjct: 162 FAGVLKACVGG---DIAFNYVK------QVHSRTFYYGFDSSPLVANLLIDLYSKNGYIE 212

Query: 490 EAEALLKTMEMKPDAAIWTSLLGACRVHG 518
            A+ +   + MK D   W +++     +G
Sbjct: 213 SAKKVFNCICMK-DIVTWVAMISGLSQNG 240


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 252/575 (43%), Positives = 367/575 (63%), Gaps = 27/575 (4%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYA--QNGELESARLVFNKSSL 193
           +L+ C   S + E +QIH  +LK GL  D    + L+   A   +G L  AR VF++   
Sbjct: 24  LLQRC---SNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVP-NESTVVTVLSACAHMGSLELG 252
            +   +  +I GY++    ++A  L+  M       VP N  T   +L AC+ M +LE  
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHS---VPHNAYTFPFLLKACSSMSALEET 137

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
             + + I   G GS ++ TN+L+++YSK GD+  AR LF+ +++RD              
Sbjct: 138 QQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDT------------- 184

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
               EAL LF +M  + I+ ++V  +S L ACA LG LD GKWIHAYI K+  +++ + L
Sbjct: 185 ----EALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPI-L 239

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
              LIDMYAKCG+++ A +VF  M  K ++ W AMISG A+HG+  +AL  F +M   G+
Sbjct: 240 GCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGV 299

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
           +P+ +TF G+L+AC+HAGL+   +  F +M + +   P ++HYGCMVDLLGRAGL  EAE
Sbjct: 300 EPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAE 359

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552
            L++ M +KP+AAIW +LL AC +HG LELG+ + K L++++P + G Y+ L++++A AG
Sbjct: 360 ELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAG 419

Query: 553 RWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE 612
            W+  A +R ++ ++G+ K+PGCS I V    HEFL GD+ HPQ K I  ML++I   L 
Sbjct: 420 EWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLR 479

Query: 613 KSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHS 672
           + G+ P   ++L D++++ KE A+ HHSEKLA+ +GLISTKPG TIRIVKNLRVC +CH+
Sbjct: 480 EEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHT 539

Query: 673 ATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
             KLISK++ REI+ RDR RFH FKDGNC+C DYW
Sbjct: 540 VIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 574



 Score =  254 bits (650), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 132/384 (34%), Positives = 221/384 (57%), Gaps = 20/384 (5%)

Query: 33  SLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +L LL +C+NM+ ++Q+H Q++KTGL   +   SKL+  CA    G L+YA  VF+ I  
Sbjct: 21  TLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
           PN  +WN +IRG+S S  P  A+  Y  M+      N YTFPF+LK+C+ +SA+ E +QI
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQI 140

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           HAH++K+G  S+ +   SL+N+Y+++G+++SARL+F++   RD                 
Sbjct: 141 HAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDT---------------- 184

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
            +A  LF  M  +      +   +V+ L ACA +G L+ G W+ + I+ H +  +  +  
Sbjct: 185 -EALNLFHRM--QTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGC 241

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            LIDMY+KCGDL +A ++F  +E++ V  W  MI GY      +EAL  F +M  + +EP
Sbjct: 242 VLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEP 301

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N +TF  +L AC++ G +   K +   +++ H    ++  +  ++D+  + G +K AE++
Sbjct: 302 NQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEEL 361

Query: 393 FDGMGYKTLAS-WNAMISGLAMHG 415
            + M  K  A+ W A+++   +HG
Sbjct: 362 IENMPVKPNAAIWGALLNACHIHG 385


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 268/705 (38%), Positives = 398/705 (56%), Gaps = 45/705 (6%)

Query: 34   LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
            L+ ++   +++ I  +    IKTG        S ++   A +  G L  A+  FET+ E 
Sbjct: 368  LSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILN--AYTRNGSLDLAMHFFETMPER 425

Query: 94   NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
            N+  W  +I   +       AI+ Y R+        T     ++ + A++  I + + I 
Sbjct: 426  NEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTA----MMTAYAQVGRIQKARLIF 481

Query: 154  AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
              +L      +     ++I  Y QNG L+ A+ +F K  ++++ S+ A+I G+       
Sbjct: 482  DEILN----PNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESR 537

Query: 214  DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
            +A +L  E+       VP++S+  + LSACA++G +E+G  + SL    G   N +V N 
Sbjct: 538  EALELLIEL--HRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNG 595

Query: 274  LIDMYSKCGD-------------------------------LVKARDLFESIEKRDVISW 302
            LI MY+KCG+                               L  AR +FE + KRDV+SW
Sbjct: 596  LISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSW 655

Query: 303  NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
              +I  Y      + AL LF  ML   I+PN +T  S+L AC  LGA+ LG+  HA I K
Sbjct: 656  TAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFK 715

Query: 363  NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALS 422
                   + +  SLI MY KCG  +    VF+ M    L +WNA++ G A +G   +A+ 
Sbjct: 716  LGFD-TFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIK 773

Query: 423  LFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482
            +F +M  EG+ PD ++F+GVL AC+HAGL+D G  +FN+M Q Y I P + HY CMVDLL
Sbjct: 774  IFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLL 833

Query: 483  GRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV 542
            GRAG   EAEAL++ M +KPD+ IW +LLGACR+H  +ELG+ VA+ L ++       YV
Sbjct: 834  GRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATYV 893

Query: 543  LLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYE 602
            LLSN++A  G WD VA IR  + D+G+ K PG S I+V + +H F+ GD+ H Q + IY 
Sbjct: 894  LLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQIEEIYS 953

Query: 603  MLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVK 662
             L E       +G++PDT+ VL+D++EE K+  L +HSEKLA+ +G++ST  G+ I+I+K
Sbjct: 954  ALKEYYGCFRATGYMPDTNFVLHDVEEEQKQNELLYHSEKLAVVFGILSTPNGSPIQIIK 1013

Query: 663  NLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            NLR+CG+CH+  K +SK+  R+II RD NRFHHF+DG+CSC DYW
Sbjct: 1014 NLRICGDCHTFMKFMSKVTLRKIIIRDGNRFHHFRDGSCSCGDYW 1058



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 137/491 (27%), Positives = 234/491 (47%), Gaps = 54/491 (10%)

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKS 139
           +S A  +F+ + E N V W  +I G+   S    A   +V+M  +   P+   F  +L +
Sbjct: 311 MSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSA 370

Query: 140 CAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSY 199
              +  +     +    +K G E D  V ++++N Y +NG L+ A   F     R+  S+
Sbjct: 371 ITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSW 430

Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVT---VLSACAHMGSLELGNWVC 256
           T +I  +A  G LDDA QL++ +P         E TV T   +++A A +G ++      
Sbjct: 431 TTMIAAFAQCGRLDDAIQLYERVP---------EQTVATKTAMMTAYAQVGRIQKAR--- 478

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
            LI    L  N+   NA+I  Y++ G L +A+DLF+ +  ++  SW  MI G+    + +
Sbjct: 479 -LIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESR 537

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           EAL L  ++ +S   P+D +F S L ACA +G +++G+ IH+   K   + N+  +   L
Sbjct: 538 EALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVM-NGL 596

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMH---------------------- 414
           I MYAKCGN++    VF  +  K   SWN++ISGL+ +                      
Sbjct: 597 ISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWT 656

Query: 415 ---------GKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
                    G  + AL LF  M+  G++P+ +T   +LSAC + G + +G Q F+A+I  
Sbjct: 657 AIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQ-FHALIFK 715

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
                 L     ++ +  + G +++   + + M  + D   W ++L  C  +G   LG+ 
Sbjct: 716 LGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMP-EHDLITWNAVLVGCAQNG---LGKE 770

Query: 526 VAKHLLELEPE 536
             K   ++E E
Sbjct: 771 AIKIFEQMEVE 781



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 127/494 (25%), Positives = 229/494 (46%), Gaps = 60/494 (12%)

Query: 55  KTGLHNTQFALSKLIE----ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSS 110
           K+G  N +   + L +    I  +   G +  A  VF  + + + V WN++I G+S +  
Sbjct: 158 KSGAKNKETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGK 217

Query: 111 PVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHT 169
              A     R++   FV  N  T+  +L   AK   I E +++   +     E +     
Sbjct: 218 VDEA-----RLLFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESM----TERNVVSWN 268

Query: 170 SLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE--- 226
           ++I+ Y QNG+L++AR +F++   ++  S+ +++TGY     + +AR+LFD+MP R    
Sbjct: 269 AMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVS 328

Query: 227 ------------------ENFV--------PNESTVVTVLSACAHMGSLELGNWVCSLIE 260
                             + FV        P++S  V VLSA   +  LEL   +  +  
Sbjct: 329 WMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAI 388

Query: 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALM 320
             G   ++ V +A+++ Y++ G L  A   FE++ +R+  SW  MI  +       +A+ 
Sbjct: 389 KTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQ 448

Query: 321 LFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN-NVSLWTSLIDM 379
           L+ ++ +  +     T  +++ A A +G +   + I   I      LN NV  W ++I  
Sbjct: 449 LYERVPEQTV----ATKTAMMTAYAQVGRIQKARLIFDEI------LNPNVVAWNAIIAG 498

Query: 380 YAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439
           Y + G +K A+ +F  M  K  ASW AMI+G   + ++ +AL L   +   G  P D +F
Sbjct: 499 YTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSF 558

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY--GCMVDLLGRAGLFDEAEALLKT 497
              LSAC + G ++IGR   +  I   K   +   Y    ++ +  + G  ++   + +T
Sbjct: 559 TSALSACANIGDVEIGRVIHSLAI---KTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRT 615

Query: 498 MEMKPDAAIWTSLL 511
           + +K D   W SL+
Sbjct: 616 IRVK-DTVSWNSLI 628



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 194/390 (49%), Gaps = 29/390 (7%)

Query: 127 VPNTYTFP--FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
            P T+ F     ++   ++  + E +++   ++    + D     S+IN Y+QNG+++ A
Sbjct: 166 TPQTHLFQCNTRIQELGRLGRVEEARRVFNEMI----QRDVVSWNSMINGYSQNGKVDEA 221

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
           RL+F+    ++  ++T L+TGYA  G +++AR++F+ M  R      N  +   ++S   
Sbjct: 222 RLLFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTER------NVVSWNAMISGYV 275

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
             G L+    +   +    + S     N+++  Y  C  + +AR+LF+ + +R+ +SW V
Sbjct: 276 QNGDLKNARKLFDEMPEKNVAS----WNSVVTGYCHCYRMSEARELFDQMPERNSVSWMV 331

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL-GKWIHAYIDKN 363
           MI GY H SDY EA  +F +M ++   P+   F+ VL A   L  L+L G      I   
Sbjct: 332 MISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTG 391

Query: 364 HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSL 423
           ++   +V + +++++ Y + G++  A   F+ M  +   SW  MI+  A  G+ D A+ L
Sbjct: 392 YE--GDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQL 449

Query: 424 FSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLG 483
           + R+  + +     T   +++A    G +   R  F+ +     ++P +  +  ++    
Sbjct: 450 YERVPEQTVA----TKTAMMTAYAQVGRIQKARLIFDEI-----LNPNVVAWNAIIAGYT 500

Query: 484 RAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
           + G+  EA+ L + M +K ++A W +++  
Sbjct: 501 QNGMLKEAKDLFQKMPVK-NSASWAAMIAG 529



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 156/336 (46%), Gaps = 28/336 (8%)

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
           ++L   N  I    + G + +AR +F  + +RDV+SWN MI GY+      EA +LF   
Sbjct: 169 THLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAF 228

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
           +  NI     T+  +L   A  G ++  + +   + +      NV  W ++I  Y + G+
Sbjct: 229 VGKNIR----TWTILLTGYAKEGRIEEAREVFESMTE-----RNVVSWNAMISGYVQNGD 279

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           +K A ++FD M  K +ASWN++++G     +  +A  LF +M     + + ++++ ++S 
Sbjct: 280 LKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMP----ERNSVSWMVMISG 335

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD-EAEALLKTMEMKP-- 502
             H   +    + ++  ++  +   +      +V L    GL D E    L+ + +K   
Sbjct: 336 YVH---ISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGY 392

Query: 503 --DAAIWTSLLGACRVHGRLELGESVAKHLLELEPE-NPGAYVLLSNMYAGAGRWDDVAT 559
             D  + +++L A   +G L+L    A H  E  PE N  ++  +   +A  GR DD   
Sbjct: 393 EGDVVVGSAILNAYTRNGSLDL----AMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQ 448

Query: 560 IRTRLNDK--GMKKVPGCSSIEVGSVVHEFLVGDKV 593
           +  R+ ++    K     +  +VG +    L+ D++
Sbjct: 449 LYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEI 484


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/544 (43%), Positives = 342/544 (62%), Gaps = 11/544 (2%)

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
           D     ++I+ YAQ G+L  A+ +FN+S +RD  ++TA+++GY   G +D+AR+ FDEMP
Sbjct: 231 DVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMP 290

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
           ++      NE +   +L+       + +      L E      N+   N +I  Y + G 
Sbjct: 291 VK------NEISYNAMLAGYVQYKKMVIAG---ELFEAMPC-RNISSWNTMITGYGQNGG 340

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           + +AR LF+ + +RD +SW  +I GY     Y+EAL +F +M +     N  TF   L  
Sbjct: 341 IAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALST 400

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
           CA + AL+LGK +H  + K   +     +  +L+ MY KCG+   A  VF+G+  K + S
Sbjct: 401 CADIAALELGKQVHGQVVKAGFE-TGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVS 459

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
           WN MI+G A HG   +AL LF  M   G++PD+IT VGVLSAC+H+GL+D G +YF +M 
Sbjct: 460 WNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMD 519

Query: 464 QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELG 523
           +DY + P  +HY CM+DLLGRAG  +EAE L++ M   P AA W +LLGA R+HG  ELG
Sbjct: 520 RDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELG 579

Query: 524 ESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSV 583
           E  A+ + ++EP+N G YVLLSN+YA +GRW DV  +R+++ + G++KV G S +EV + 
Sbjct: 580 EKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNK 639

Query: 584 VHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKL 643
           +H F VGD  HP+   IY  L+E+D  + + G+V  T  VL+D++EE KE  L +HSEKL
Sbjct: 640 IHTFSVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKL 699

Query: 644 AIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSC 703
           A+A+G+++   G  IR++KNLRVC +CH+A K ISKI  R II RD +RFHHF +G CSC
Sbjct: 700 AVAFGILTIPAGRPIRVMKNLRVCQDCHNAIKHISKIVGRLIILRDSHRFHHFSEGICSC 759

Query: 704 NDYW 707
            DYW
Sbjct: 760 GDYW 763



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 143/574 (24%), Positives = 241/574 (41%), Gaps = 96/574 (16%)

Query: 90  IREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG 149
            ++P+ V WN  I  H  +     A++ +  M     V         L++ AK S   + 
Sbjct: 41  FKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRN-AKFSLARD- 98

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
                 +     E D F    ++  Y +N  L  A  +F+    +D VS+ A+++GYA  
Sbjct: 99  ------LFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQN 152

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL-------------ELGNWVC 256
           G++D+AR++F++MP R      N  +   +L+A  H G L             EL +W C
Sbjct: 153 GFVDEAREVFNKMPHR------NSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNC 206

Query: 257 SL---IEGHGLGSNLHVT-----------NALIDMYSKCGDLVKARDLFESIEKRDVISW 302
            +   ++ + LG    +            N +I  Y++ GDL +A+ LF     RDV +W
Sbjct: 207 LMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTW 266

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
             M+ GY       EA   F +M       N++++ ++L      G +   K + A    
Sbjct: 267 TAMVSGYVQNGMVDEARKYFDEMPVK----NEISYNAMLA-----GYVQYKKMVIAGELF 317

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALS 422
                 N+S W ++I  Y + G I  A ++FD M  +   SW A+ISG A +G  ++AL+
Sbjct: 318 EAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALN 377

Query: 423 LFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD-- 480
           +F  M  +G   +  TF   LS C     L++G+Q    +++           GC V   
Sbjct: 378 MFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVK------AGFETGCFVGNA 431

Query: 481 LLG---RAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537
           LLG   + G  DEA  + + +E K D   W +++     HG    G              
Sbjct: 432 LLGMYFKCGSTDEANDVFEGIEEK-DVVSWNTMIAGYARHG---FGRQ------------ 475

Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS---IEVGSVVHEFLVGD-KV 593
             A VL  +M     + D++  +           +  CS    I+ G+     +  D  V
Sbjct: 476 --ALVLFESMKKAGVKPDEITMVGV---------LSACSHSGLIDRGTEYFYSMDRDYNV 524

Query: 594 HPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
            P SKH   M+D    LL ++G + +   ++ +M
Sbjct: 525 KPTSKHYTCMID----LLGRAGRLEEAENLMRNM 554



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 142/286 (49%), Gaps = 20/286 (6%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G ++ A  +F+ + + + V W  II G++ +     A+  +V M   G   N  TF   L
Sbjct: 339 GGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCAL 398

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
            +CA I+A+  GKQ+H  V+K G E+  FV  +L+ MY + G  + A  VF     +D V
Sbjct: 399 STCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVV 458

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN-WVC 256
           S+  +I GYA  G+   A  LF+ M  ++    P+E T+V VLSAC+H G ++ G  +  
Sbjct: 459 SWNTMIAGYARHGFGRQALVLFESM--KKAGVKPDEITMVGVLSACSHSGLIDRGTEYFY 516

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIG-----GYT 310
           S+   + +         +ID+  + G L +A +L  ++       SW  ++G     G T
Sbjct: 517 SMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNT 576

Query: 311 HTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
              + K A M+F+      +EP + + + VL +  Y  +   G+W+
Sbjct: 577 ELGE-KAAEMVFK------MEPQN-SGMYVLLSNLYAAS---GRWV 611



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 7/172 (4%)

Query: 37  LSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           LS C ++  +   KQVH Q++K G     F  + L+ +      G    A  VFE I E 
Sbjct: 398 LSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGM--YFKCGSTDEANDVFEGIEEK 455

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ-I 152
           + V WN +I G++       A+  +  M  +G  P+  T   +L +C+    I  G +  
Sbjct: 456 DVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYF 515

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESAR-LVFNKSSLRDAVSYTALI 203
           ++      ++     +T +I++  + G LE A  L+ N      A S+ AL+
Sbjct: 516 YSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALL 567


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 263/692 (38%), Positives = 402/692 (58%), Gaps = 17/692 (2%)

Query: 25  YKLLQNQPS----LALLSKCTNMQNI---KQVHSQIIKT-GLHNTQFALSKLIEICAVSP 76
           YK +  QP+      +L  C +++ +   K +HS+I  T GL       + L+ + A   
Sbjct: 112 YKRMDLQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYA--K 169

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
            G L  A  +FE +   +   WN +I  ++ S     AI+ Y  M +    P+  TF  +
Sbjct: 170 CGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVE---PSVRTFTSV 226

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L +C+ +  + +G++IHA +   G E D  +  +L+ MYA+   L+ A  +F +   RD 
Sbjct: 227 LSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDV 286

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           VS++A+I  +A     D+A + + +M +  E   PN  T  +VL ACA +G L  G  V 
Sbjct: 287 VSWSAMIAAFAETDLFDEAIEFYSKMQL--EGVRPNYYTFASVLLACASVGDLRAGRAVH 344

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
             I G+G    L    AL+D+Y+  G L +AR LF+ IE RD   W V+IGGY+      
Sbjct: 345 DQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRT 404

Query: 317 EALMLFRQMLQSNIEP-NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
             L L+R+M  +   P   + +  V+ ACA LGA    +  H+ I+ +   +++  L TS
Sbjct: 405 GVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGM-ISDFVLATS 463

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           L++MY++ GN+++A QVFD M  +   +W  +I+G A HG+   AL L+  M  EG +P 
Sbjct: 464 LVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPS 523

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
           ++TF+ VL AC+HAGL + G+Q F ++  DY + P + HY C++DLL RAG   +AE L+
Sbjct: 524 ELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELI 583

Query: 496 KTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555
             M ++P+   W+SLLGA R+H  ++     A  + +L+P +P +YVLLSN++A  G   
Sbjct: 584 NAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLA 643

Query: 556 DVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSG 615
            +A++R  +  +G+KK  G S IEV   +HEF VGD  HP+ + I+  L  +   ++++G
Sbjct: 644 GMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAG 703

Query: 616 FVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATK 675
           +VP++ EVL+D+ E+ KE  L  HSEKLAIA+GLI+T PGTT+RI   LR+C +CHSA K
Sbjct: 704 YVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRICHDCHSAVK 763

Query: 676 LISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            IS I  REII RD +RFH F+DG CSC DYW
Sbjct: 764 FISAIARREIIVRDSSRFHKFRDGQCSCGDYW 795



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 130/384 (33%), Positives = 209/384 (54%), Gaps = 18/384 (4%)

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L+ C  + ++   +QIH  +      ++ F+   ++  Y + G + SAR  F+  + ++ 
Sbjct: 34  LRQCQDLESV---RQIHDRI-SGAASANVFLGNEIVRAYGKCGSVASARAAFDAIARKND 89

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
            S+ +++T YA  G+   A  L+  M ++     PN     TVL ACA + +LE G  + 
Sbjct: 90  YSWGSMLTAYAQNGHYRAALDLYKRMDLQ-----PNPVVYTTVLGACASIKALEEGKAIH 144

Query: 257 SLIEG-HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
           S I G  GL  ++ + N+L+ MY+KCG L  A+ LFE +  R V SWN MI  Y  +  +
Sbjct: 145 SRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHF 204

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
           +EA+ L+  M   ++EP+  TF SVL AC+ LG LD G+ IHA I     +L ++SL  +
Sbjct: 205 EEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTEL-DLSLQNA 260

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           L+ MYA+C  +  A ++F  +  + + SW+AMI+  A     D+A+  +S+M  EG++P+
Sbjct: 261 LLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPN 320

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQD-YKISPKLQHYGCMVDLLGRAGLFDEAEAL 494
             TF  VL AC   G L  GR   + ++ + YKI+  L +   +VDL    G  DEA +L
Sbjct: 321 YYTFASVLLACASVGDLRAGRAVHDQILGNGYKIT--LVNGTALVDLYTSYGSLDEARSL 378

Query: 495 LKTMEMKPDAAIWTSLLGACRVHG 518
              +E + D  +WT L+G     G
Sbjct: 379 FDQIENR-DEGLWTVLIGGYSKQG 401



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/299 (31%), Positives = 155/299 (51%), Gaps = 39/299 (13%)

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
           +N+ + N ++  Y KCG +  AR  F++I +++  SW  M+  Y     Y+ AL L+++M
Sbjct: 56  ANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM 115

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
              +++PN V + +VL ACA + AL+ GK IH+ I        +V L  SL+ MYAKCG+
Sbjct: 116 ---DLQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGS 172

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           ++ A+++F+ M  ++++SWNAMI+  A  G  ++A+ L+  M    ++P   TF  VLSA
Sbjct: 173 LEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSA 229

Query: 446 CNHAGLLDIGRQYF---------------NAMIQDY----------KISPKLQH-----Y 475
           C++ GLLD GR+                 NA++  Y          KI  +L       +
Sbjct: 230 CSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSW 289

Query: 476 GCMVDLLGRAGLFDEAEALLKTMEM---KPDAAIWTSLLGACRVHGRLELGESVAKHLL 531
             M+       LFDEA      M++   +P+   + S+L AC   G L  G +V   +L
Sbjct: 290 SAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQIL 348


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 256/682 (37%), Positives = 399/682 (58%), Gaps = 20/682 (2%)

Query: 35  ALLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           A L  C +   IK   Q+H+ I+K+G     +  + L+ +     FG +  A ++F  + 
Sbjct: 165 AALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAM--YVRFGKMPEAAVIFGNLE 222

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             + V WN+++ G   +     A++F+  +  +   P+  +   I+ +  ++  +  GK+
Sbjct: 223 GKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKE 282

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IHA+ +K G +S+  V  +LI+MYA+   +      F+  + +D +S+T    GYA    
Sbjct: 283 IHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKC 342

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG-----S 266
              A +L  ++ +  E    + + + ++L AC  +      N +  + E HG       S
Sbjct: 343 YLQALELLRQLQM--EGMDVDATMIGSILLACRGL------NCLGKIKEIHGYTIRGGLS 394

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML 326
           +  + N +ID+Y +CG +  A  +FESIE +DV+SW  MI  Y H     +AL +F  M 
Sbjct: 395 DPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMK 454

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
           ++ +EP+ VT +S+L A   L  L  GK IH +I +    L   S+  +L+DMYA+CG++
Sbjct: 455 ETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEG-SISNTLVDMYARCGSV 513

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
           + A ++F     + L  W AMIS   MHG  + A+ LF RM  E + PD ITF+ +L AC
Sbjct: 514 EDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYAC 573

Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
           +H+GL++ G+ +   M  +Y++ P  +HY C+VDLLGR    +EA  ++K+M+ +P   +
Sbjct: 574 SHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEV 633

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
           W +LLGACR+H   E+GE  A+ LLEL+ +NPG YVL+SN++A  GRW DV  +R R+  
Sbjct: 634 WCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKG 693

Query: 567 KGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEI-DALLEKSGFVPDTSEVLY 625
            G+ K PGCS IEVG+ +H FL  DK+HP+   IY+ L ++ + L  + G+V  T  VL+
Sbjct: 694 SGLTKNPGCSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLH 753

Query: 626 DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREI 685
           ++ EE K   L  HSE+LAIAYGL++T  GT IR+ KNLRVCG+CHS   L+S+ F RE+
Sbjct: 754 NVGEEEKVQMLYGHSERLAIAYGLLATAEGTPIRVTKNLRVCGDCHSFCTLVSRFFEREL 813

Query: 686 IARDRNRFHHFKDGNCSCNDYW 707
           I RD +RFHHFKDG CSC D+W
Sbjct: 814 IVRDASRFHHFKDGMCSCGDFW 835



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/444 (30%), Positives = 234/444 (52%), Gaps = 8/444 (1%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G +  A ++F+ + E +   WN ++ G+  +   + A++ Y  M   G   ++YTFP +L
Sbjct: 6   GSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLL 65

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-DA 196
           K+C  +  +  G +IH   +K G +S  FV  SL+ +YA+  ++  AR +F++  +R D 
Sbjct: 66  KACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDV 125

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           VS+ ++I+ Y+  G   +A  LF EM   +   V N  T    L AC     ++LG  + 
Sbjct: 126 VSWNSIISAYSGNGMCTEALCLFSEML--KAGVVTNTYTFAAALQACEDSSFIKLGMQIH 183

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
           + I   G   +++V NAL+ MY + G + +A  +F ++E +D+++WN M+ G+     Y 
Sbjct: 184 AAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYS 243

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           EAL  F  +  ++++P+ V+ +S++ A   LG L  GK IHAY  KN    +N+ +  +L
Sbjct: 244 EALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFD-SNILVGNTL 302

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           IDMYAKC  +    + FD M +K L SW    +G A +    +AL L  ++  EG+  D 
Sbjct: 303 IDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDA 362

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
                +L AC     L   ++     I+     P LQ+   ++D+ G  G+ D A  + +
Sbjct: 363 TMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQN--TIIDVYGECGIIDYAVRIFE 420

Query: 497 TMEMKPDAAIWTSLLGACRVHGRL 520
           ++E K D   WTS++ +C VH  L
Sbjct: 421 SIECK-DVVSWTSMI-SCYVHNGL 442



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/376 (28%), Positives = 178/376 (47%), Gaps = 37/376 (9%)

Query: 174 MYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
           MY + G +  A ++F+K S R   ++ A++ GY S G    A +++ EM  R      + 
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREM--RHLGVSFDS 58

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
            T   +L AC  +  L  G  +  L   +G  S + V N+L+ +Y+KC D+  AR LF+ 
Sbjct: 59  YTFPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDR 118

Query: 294 IEKR-DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL 352
           +  R DV+SWN +I  Y+      EAL LF +ML++ +  N  TF + L AC     + L
Sbjct: 119 MYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKL 178

Query: 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLA 412
           G  IHA I K+ + L +V +  +L+ MY + G +  A  +F  +  K + +WN+M++G  
Sbjct: 179 GMQIHAAILKSGRVL-DVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFI 237

Query: 413 MHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF------------- 459
            +G   +AL  F  +    L+PD ++ + ++ A    G L  G++               
Sbjct: 238 QNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNIL 297

Query: 460 --NAMIQDYKISPKLQHYGCMVDLLGRAGLFD---------------EAEALLKTMEMKP 502
             N +I  Y     + + G   DL+    L                 +A  LL+ ++M+ 
Sbjct: 298 VGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEG 357

Query: 503 ---DAAIWTSLLGACR 515
              DA +  S+L ACR
Sbjct: 358 MDVDATMIGSILLACR 373


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 265/681 (38%), Positives = 387/681 (56%), Gaps = 14/681 (2%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           + +L  C   + I   K VH   +K  L       + L+++   S +G +  + ++F+  
Sbjct: 280 VTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDM--YSKWGCIIDSQMIFKLN 337

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG---FVPNTYTFPFILKSCAKISAIS 147
              N V WN ++ G S +   +      +R +L+G      +  T    +  C   S + 
Sbjct: 338 NNKNVVSWNTMVGGFS-AEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLP 396

Query: 148 EGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA 207
             K++H + LK     D  +  + +  YA+ G L  A+ VF+    +   S+ ALI GYA
Sbjct: 397 SLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYA 456

Query: 208 SRGYLDDARQLFD-EMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS 266
                 D R   D  + ++    +P+  TV ++LSAC+ + SL LG  V   I  + L  
Sbjct: 457 QSS---DPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLER 513

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML 326
           +L V  +++ +Y  CG+L   + LF+++E   ++SWN +I G+      + AL LFRQM+
Sbjct: 514 DLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMV 573

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
              I+P  ++ ++V  AC+ L +L LG+  HAY  K H   +N  +  S+IDMYAK G I
Sbjct: 574 LYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALK-HLLEDNAFIACSIIDMYAKNGAI 632

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
             + +VF+G+  K+ ASWNAMI G  MHG+A +A+ LF  M   G  PDD+TF+GVL+AC
Sbjct: 633 TQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTAC 692

Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
           NH+GLL  G +Y + M   + + P L+HY C++D+LGRAG  D A  +   M  +PD  I
Sbjct: 693 NHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGI 752

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
           W SLL  CR+H  LE+GE VA  L  LEPE P  YVLLSN+YAG G+WDDV  +R R+ +
Sbjct: 753 WNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDVRQVRQRMKE 812

Query: 567 KGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYD 626
             ++K  GCS IE+   V  F+VG++     + I  +   ++  + K G+ PDTS V +D
Sbjct: 813 MSLRKDAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILEMKIWKMGYRPDTSSVQHD 872

Query: 627 MDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREII 686
           + EE K   L  HSEKLAI YGLI T  GTT+R+ KNLR+C +CH+A KLISK+  REI+
Sbjct: 873 LSEEEKIEQLRGHSEKLAITYGLIKTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIV 932

Query: 687 ARDRNRFHHFKDGNCSCNDYW 707
            RD  RFHHF  G CSC DYW
Sbjct: 933 VRDNKRFHHFNKGFCSCGDYW 953



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 163/604 (26%), Positives = 280/604 (46%), Gaps = 76/604 (12%)

Query: 56  TGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAI 115
           T L +     +++I + A+    D S +   F+ +R  N   WN +I  +S +      +
Sbjct: 114 TRLRSDDVLCTRIITMYAMCGSPDDSRS--AFDALRSKNLFQWNAVISSYSRNELYHEVL 171

Query: 116 KFYVRMI-LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINM 174
           + +++MI  +  +P+ +TFP ++K+CA IS +  G  +H  V+K GL  D FV  +L++ 
Sbjct: 172 EMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSF 231

Query: 175 YAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNES 234
           Y  +G +  A  +F+    R+ VS+ ++I  ++  G  DD              F+P+ +
Sbjct: 232 YGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNG--DDGA------------FMPDVA 277

Query: 235 TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
           TVVTVL  CA    + +G  V        L   L V NAL+DMYSK G ++ ++ +F+  
Sbjct: 278 TVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLN 337

Query: 295 EKRDVISWNVMIGGYTHTSDYKEALMLFRQML--QSNIEPNDVTFLSVLPACAYLGALDL 352
             ++V+SWN M+GG++   D      L RQML    +++ ++VT L+ +P C     L  
Sbjct: 338 NNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPS 397

Query: 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLA 412
            K +H Y  K     + + L  + +  YAKCG++  A++VF G+  KTL SWNA+I G A
Sbjct: 398 LKELHCYSLKQEFVYDEL-LANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYA 456

Query: 413 MHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY------ 466
                  +L    +M   GL PD+ T   +LSAC+    L +G++    +I+++      
Sbjct: 457 QSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLF 516

Query: 467 ---KISPKLQHYG--CMVDLLGRA-------------------GLFDEAEALLKTMEM-- 500
               +     H G  C V +L  A                   G  + A  L + M +  
Sbjct: 517 VYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYG 576

Query: 501 -KPDAAIWTSLLGACRVHGRLELGES----VAKHLLELEPENPGAYVLLSNMYAGAGRWD 555
            +P      ++ GAC +   L LG        KHLLE   +N      + +MYA  G   
Sbjct: 577 IQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLE---DNAFIACSIIDMYAKNGAIT 633

Query: 556 DVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSG 615
             + +   L +K              +  +  ++G  +H ++K   ++ +E    ++++G
Sbjct: 634 QSSKVFNGLKEKS------------AASWNAMIMGYGMHGRAKEAIKLFEE----MQRTG 677

Query: 616 FVPD 619
             PD
Sbjct: 678 RNPD 681



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 132/476 (27%), Positives = 242/476 (50%), Gaps = 27/476 (5%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           VH  ++KTGL    F  + L+       F  +S AL +F+ + E N V WN++IR  S +
Sbjct: 209 VHGLVVKTGLVEDLFVGNALVSFYGTHGF--VSDALKLFDIMPERNLVSWNSMIRVFSDN 266

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVH 168
                            F+P+  T   +L  CA+   I  GK +H   +KL L+ +  V+
Sbjct: 267 GDD------------GAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVN 314

Query: 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
            +L++MY++ G +  ++++F  ++ ++ VS+  ++ G+++ G +     L  +M    E+
Sbjct: 315 NALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSED 374

Query: 229 FVPNESTVVTVLSACAHMGSL-ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA 287
              +E T++  +  C     L  L    C  ++   +   L + NA +  Y+KCG L  A
Sbjct: 375 VKADEVTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDEL-LANAFVASYAKCGSLSYA 433

Query: 288 RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347
           + +F  I  + + SWN +IGGY  +SD + +L    QM  S + P++ T  S+L AC+ L
Sbjct: 434 QRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKL 493

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
            +L LGK +H +I +N  +  ++ ++ S++ +Y  CG +   + +FD M   +L SWN +
Sbjct: 494 KSLRLGKEVHGFIIRNWLE-RDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTV 552

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           I+G   +G  ++AL LF +M+  G+QP  I+ + V  AC+    L +GR+        Y 
Sbjct: 553 ITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGRE-----AHAYA 607

Query: 468 ISPKLQ---HYGC-MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
           +   L+      C ++D+  + G   ++  +   ++ K  AA W +++    +HGR
Sbjct: 608 LKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKS-AASWNAMIMGYGMHGR 662



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 99/216 (45%), Gaps = 15/216 (6%)

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS------VLPACAYLGALDLGKWIHAY 359
           I  +  T D  ++  + ++    +   +DV  L       +L A      +++G+ IH  
Sbjct: 50  ISNFCETGDLDKSFRVVQEFAGDDESSSDVFLLVREALGLLLQASGKRKDIEMGRKIHHL 109

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADK 419
           +  + +  ++  L T +I MYA CG+   +   FD +  K L  WNA+IS  + +    +
Sbjct: 110 VSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHE 169

Query: 420 ALSLFSRMIGEG-LQPDDITFVGVLSACNHAGLLDIGRQY-FNAMIQDYKISPKLQHYGC 477
            L +F +MI +  L PD+ TF  V+ AC  AG+ D+G     + ++    +   L     
Sbjct: 170 VLEMFIKMISKTHLLPDNFTFPCVIKAC--AGISDVGIGLAVHGLVVKTGLVEDLFVGNA 227

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAI--WTSLL 511
           +V   G  G   +A   LK  ++ P+  +  W S++
Sbjct: 228 LVSFYGTHGFVSDA---LKLFDIMPERNLVSWNSMI 260


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/604 (39%), Positives = 366/604 (60%), Gaps = 30/604 (4%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           F  +L+SC   +++S GKQ+H+ ++  G  SD F+   L+N+Y++ G+L++A  +F    
Sbjct: 55  FSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMP 114

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIR--------------------------- 225
            ++ +S   LI GY   G    AR++FDEMP R                           
Sbjct: 115 RKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSR 174

Query: 226 --EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
             E  F+P+E  + +VL  CA + +L  G  V   +   G   NL V ++L  MY KCG 
Sbjct: 175 MNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGS 234

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           L +   L  ++  ++V++WN +I G       +E L  +  M  +   P+ +TF+SV+ +
Sbjct: 235 LGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISS 294

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
           C+ L  L  G+ IHA + K    L  VS+ +SLI MY++CG ++ + +VF       +  
Sbjct: 295 CSELATLGQGQQIHAEVIKAGASLI-VSVISSLISMYSRCGCLEYSLKVFLECENGDVVC 353

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
           W++MI+    HG+  +A+ LF++M  E L+ +D+TF+ +L AC+H GL + G ++F+ M+
Sbjct: 354 WSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMV 413

Query: 464 QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELG 523
           + Y + P+L+HY CMVDLLGR G  +EAEAL+++M +K D   W +LL AC++H + E+ 
Sbjct: 414 EKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMA 473

Query: 524 ESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSV 583
             +++ +  L+P +P  YVLLSN++A   RWDDV+ +R  + D+ +KK PG S +EV + 
Sbjct: 474 RRISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQ 533

Query: 584 VHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKL 643
           +H+F +GDK HP+S  I   L E+ + ++K G+VPD   VL+DMD E KE +L HHSEKL
Sbjct: 534 IHQFCMGDKSHPKSVEIASYLRELTSEMKKRGYVPDIDSVLHDMDVEDKEYSLVHHSEKL 593

Query: 644 AIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSC 703
           AIA+ L+ T  GT IR++KNLRVC +CH A K IS+I NREII RD +RFHHFK+G CSC
Sbjct: 594 AIAFALLYTPVGTPIRVIKNLRVCSDCHVAIKYISEISNREIIVRDSSRFHHFKNGRCSC 653

Query: 704 NDYW 707
            DYW
Sbjct: 654 GDYW 657



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 121/441 (27%), Positives = 212/441 (48%), Gaps = 39/441 (8%)

Query: 16  HFPPSSDPPYKLLQNQPSL--ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIE 70
           H   + D     + ++PSL   LL  C +  ++   KQ+HS II +G  + +F  + L+ 
Sbjct: 36  HLKQAFDRFSSHIWSEPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLN 95

Query: 71  I--------CAVSPFG---------------------DLSYALLVFETIREPNQVIWNNI 101
           +         A++ FG                     D   A  +F+ + E N   WN +
Sbjct: 96  LYSKCGQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAM 155

Query: 102 IRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGL 161
           + G          +  + RM   GF+P+ +    +L+ CA + A+  G+Q+H +V K G 
Sbjct: 156 VAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGF 215

Query: 162 ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDE 221
           E +  V +SL +MY + G L     +      ++ V++  LI G A  GY ++    ++ 
Sbjct: 216 EFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNM 275

Query: 222 MPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC 281
           M +    F P++ T V+V+S+C+ + +L  G  + + +   G    + V ++LI MYS+C
Sbjct: 276 MKM--AGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRC 333

Query: 282 GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
           G L  +  +F   E  DV+ W+ MI  Y       EA+ LF QM Q  +E NDVTFLS+L
Sbjct: 334 GCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLL 393

Query: 342 PACAYLGALDLG-KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT 400
            AC++ G  + G K+    ++K   K   +  +T ++D+  + G+++ AE +   M  K 
Sbjct: 394 YACSHCGLKEKGIKFFDLMVEKYGVK-PRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKA 452

Query: 401 -LASWNAMISGLAMHGKADKA 420
            + +W  ++S   +H K + A
Sbjct: 453 DVITWKTLLSACKIHKKTEMA 473



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 169/352 (48%), Gaps = 42/352 (11%)

Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVT-VLSACAHMGSLELGNWVCSL 258
           TA  T   S+G+L   +Q FD    R  + + +E ++ + +L +C    SL LG  + SL
Sbjct: 25  TAEFTNLCSKGHL---KQAFD----RFSSHIWSEPSLFSHLLQSCISENSLSLGKQLHSL 77

Query: 259 IEGHGLGSNLHVTNALIDMYSKC-------------------------------GDLVKA 287
           I   G  S+  ++N L+++YSKC                               GD V A
Sbjct: 78  IITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTA 137

Query: 288 RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347
           R +F+ + +R+V +WN M+ G       +E L LF +M +    P++    SVL  CA L
Sbjct: 138 RKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGL 197

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
            AL  G+ +H Y+ K   + N V + +SL  MY KCG++   E++   M  + + +WN +
Sbjct: 198 RALVAGRQVHGYVRKCGFEFNLVVV-SSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTL 256

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           I+G A +G  ++ L  ++ M   G +PD ITFV V+S+C+    L  G+Q  +A +    
Sbjct: 257 IAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQ-IHAEVIKAG 315

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
            S  +     ++ +  R G  + +  +    E   D   W+S++ A   HGR
Sbjct: 316 ASLIVSVISSLISMYSRCGCLEYSLKVFLECE-NGDVVCWSSMIAAYGFHGR 366


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/576 (40%), Positives = 368/576 (63%), Gaps = 5/576 (0%)

Query: 126 FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG-LESDPFVHTSLINMYAQNGELESA 184
            VP+   +  +LK C ++  + +G+ +HAH++    L++   +   ++NMYA+ G L+ A
Sbjct: 83  LVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDA 142

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
           R +F++   +D V++TALI G++      DA  LF +M      F PN  T+ ++L A  
Sbjct: 143 RRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQM--LRLGFQPNHFTLSSLLKASG 200

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
               L+ G  + +    +G  S+++V +AL+DMY++CG +  A+  F+ +  +  +SWN 
Sbjct: 201 SEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNA 260

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           +I G+    + + AL L  +M + N +P   T+ SVL ACA +GAL+ GKW+HA++ K+ 
Sbjct: 261 LISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSG 320

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF 424
            KL    +  +L+DMYAK G+I  A++VFD +    + SWN M++G A HG   + L  F
Sbjct: 321 LKLIAF-IGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRF 379

Query: 425 SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484
            +M+  G++P++I+F+ VL+AC+H+GLLD G  YF  M + YK+ P + HY   VDLLGR
Sbjct: 380 EQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLLGR 438

Query: 485 AGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL 544
            GL D AE  ++ M ++P AA+W +LLGACR+H  +ELG   A+   EL+P + G  +LL
Sbjct: 439 VGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLL 498

Query: 545 SNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEML 604
           SN+YA AGRW DVA +R  + + G+KK P CS +E+ + VH F+  D+ HP+ K I    
Sbjct: 499 SNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKEIRGKW 558

Query: 605 DEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNL 664
           +EI   +++ G+VPDTS VL  +D++ +E  L +HSEKLA+A+ L++T  G+ IRI KN+
Sbjct: 559 EEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNI 618

Query: 665 RVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGN 700
           RVCG+CH+A K +SK+ +REII RD NRFH F+DG+
Sbjct: 619 RVCGDCHAAIKFVSKVVDREIIVRDTNRFHRFRDGS 654



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 125/383 (32%), Positives = 210/383 (54%), Gaps = 8/383 (2%)

Query: 36  LLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LL +CT +  ++Q   VH+ ++ +   +    L  +I +   +  G L  A  +F+ +  
Sbjct: 93  LLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNII-VNMYAKCGCLDDARRMFDEMPT 151

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V W  +I G S ++ P  A+  + +M+  GF PN +T   +LK+      +  G Q+
Sbjct: 152 KDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQL 211

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           HA  LK G +S  +V ++L++MYA+ G +++A+L F+    +  VS+ ALI+G+A +G  
Sbjct: 212 HAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEG 271

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           + A  L  +M  + +NF P   T  +VLSACA +G+LE G WV + +   GL     + N
Sbjct: 272 EHALHLLWKM--QRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGN 329

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            L+DMY+K G +  A+ +F+ + K DV+SWN M+ G       KE L  F QML+  IEP
Sbjct: 330 TLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEP 389

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N+++FL VL AC++ G LD G +    + K ++   +V  + + +D+  + G +  AE+ 
Sbjct: 390 NEISFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLLGRVGLLDRAERF 448

Query: 393 FDGMGYK-TLASWNAMISGLAMH 414
              M  + T A W A++    MH
Sbjct: 449 IREMPIEPTAAVWGALLGACRMH 471



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 151/308 (49%), Gaps = 13/308 (4%)

Query: 4   PPSSLTLSPSILH--FPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNT 61
           P  +L L P +L   F P+      LL+   S   L   T      Q+H+  +K G  ++
Sbjct: 170 PRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGT------QLHAFCLKYGYQSS 223

Query: 62  QFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRM 121
            +  S L+++ A    G +  A L F+ +   ++V WN +I GH+       A+    +M
Sbjct: 224 VYVGSALVDMYARC--GHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKM 281

Query: 122 ILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGEL 181
               F P  +T+  +L +CA I A+ +GK +HAH++K GL+   F+  +L++MYA+ G +
Sbjct: 282 QRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSI 341

Query: 182 ESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLS 241
           + A+ VF++    D VS+  ++TG A  G   +    F++M        PNE + + VL+
Sbjct: 342 DDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQM--LRIGIEPNEISFLCVLT 399

Query: 242 ACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVIS 301
           AC+H G L+ G +   L++ + +  ++      +D+  + G L +A      +      +
Sbjct: 400 ACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAA 459

Query: 302 -WNVMIGG 308
            W  ++G 
Sbjct: 460 VWGALLGA 467



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 125/292 (42%), Gaps = 46/292 (15%)

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
           SD    L     + + ++ P+   +  +L  C  LG ++ G+ +HA++  +H   N++ L
Sbjct: 66  SDGGTGLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVL 125

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
              +++MYAKCG +  A ++FD M  K + +W A+I+G + + +   AL LF +M+  G 
Sbjct: 126 QNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGF 185

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
           QP+  T   +L A      LD G Q  +A    Y     +     +VD+  R G  D A+
Sbjct: 186 QPNHFTLSSLLKASGSEHGLDPGTQ-LHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQ 244

Query: 493 ALLKTMEMK----------------------------------PDAAIWTSLLGACRVHG 518
                M  K                                  P    ++S+L AC   G
Sbjct: 245 LAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIG 304

Query: 519 RLELGESVAKHLLELEPENPGAYVL------LSNMYAGAGRWDDVATIRTRL 564
            LE G+ V  H+++      G  ++      L +MYA AG  DD   +  RL
Sbjct: 305 ALEQGKWVHAHMIK-----SGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL 351


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 253/598 (42%), Positives = 364/598 (60%), Gaps = 40/598 (6%)

Query: 145 AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
           +I++ KQ HA+++     + P +    +   A    L  A  +F++    D   Y  +I 
Sbjct: 191 SINQIKQTHANLITTAQITLPVIANKFLKNVAL-ASLTYAHKLFDQIPQPDLFIYNTMIK 249

Query: 205 GYA--SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
            ++     YLD    +F  + IR+  + PN  + V    AC +   +  G  V +     
Sbjct: 250 SHSMSPHSYLDSI-AVFRSL-IRDSGYFPNRYSFVFAFGACGNGMCVREGEQVFTHAVKV 307

Query: 263 GLGSNLHVTNALIDMYSK-------------------------------CGDLVKARDLF 291
           GL  N+ V NALI M+ K                                G++V A++LF
Sbjct: 308 GLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELF 367

Query: 292 ESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALD 351
           + + +RDV+SW+ +I GY     + EAL  F +MLQS ++PN+ T +S L AC+ L ALD
Sbjct: 368 DEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALD 427

Query: 352 LGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISG 410
            GKWIH YI +++ K+N+  L  SLIDMYAKCG I +A  VF     K  +  WNAMI G
Sbjct: 428 QGKWIHVYIRRDNIKMND-RLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGG 486

Query: 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470
            AMHGK ++A+++F +M  E + P+ +TF+ +L+AC+H  ++  G+ YF  M  DY I+P
Sbjct: 487 FAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDYGINP 546

Query: 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHL 530
           +++HYGCMVDLL R+G   ++E ++ +M M PD AIW +LL ACR++  +E G  + + +
Sbjct: 547 EIEHYGCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWGALLNACRIYKDMERGYRIGRII 606

Query: 531 LELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN-DKGMKKVPGCSSIEVGSVVHEFLV 589
            E++P + G  VLL N+Y+ +GRW++   +R +   +   KK+PG SSIE+  V HEFLV
Sbjct: 607 KEIDPNHIGCNVLLGNIYSTSGRWNEARMVREKNEINSDRKKIPGFSSIELNGVFHEFLV 666

Query: 590 GDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM-DEEWKEGALSHHSEKLAIAYG 648
           GD+ HPQS+ IY  LDE+ + L+ +G+VP+  EVL D  DEE KE ALS HSEKLAIA+G
Sbjct: 667 GDRSHPQSREIYSFLDEMISKLKIAGYVPELGEVLLDFDDEEDKETALSVHSEKLAIAFG 726

Query: 649 LISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDY 706
           L++T PGT IRIVKNLRVCG+CH ATK ISK+++R II RDR R+HHFKDG CSC DY
Sbjct: 727 LMNTAPGTPIRIVKNLRVCGDCHQATKFISKVYDRVIIVRDRMRYHHFKDGICSCKDY 784



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 127/456 (27%), Positives = 232/456 (50%), Gaps = 38/456 (8%)

Query: 15  LHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAV 74
           LH    +  P+  + +    +L+  C ++  IKQ H+ +I T         +K ++  A+
Sbjct: 164 LHKNMINTKPFHYVNHSKLSSLIDLCKSINQIKQTHANLITTAQITLPVIANKFLKNVAL 223

Query: 75  SPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSS-SPVVAIKFYVRMIL-SGFVPNTYT 132
           +    L+YA  +F+ I +P+  I+N +I+ HS+S  S + +I  +  +I  SG+ PN Y+
Sbjct: 224 A---SLTYAHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYS 280

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           F F   +C     + EG+Q+  H +K+GL+ + FV  +LI M+ + G +E AR VF+ + 
Sbjct: 281 FVFAFGACGNGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAV 340

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIR--------------------------- 225
            RD  S+  +I  Y   G +  A++LFDEM  R                           
Sbjct: 341 DRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHK 400

Query: 226 --EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
             +    PNE T+V+ L+AC+++ +L+ G W+   I    +  N  +  +LIDMY+KCG+
Sbjct: 401 MLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKCGE 460

Query: 284 LVKARDLF-ESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
           +  A  +F E   KR V  WN MIGG+      +EA+ +F +M    + PN VTF+++L 
Sbjct: 461 IDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLN 520

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TL 401
           AC++   +  GK     +  ++     +  +  ++D+ ++ G++K +E++   M     +
Sbjct: 521 ACSHGYMVKEGKSYFELMASDYGINPEIEHYGCMVDLLSRSGHLKDSEEMILSMPMAPDV 580

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI 437
           A W A+++   ++   ++   +  R+I E + P+ I
Sbjct: 581 AIWGALLNACRIYKDMERGYRI-GRIIKE-IDPNHI 614



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 152/295 (51%), Gaps = 11/295 (3%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G++  A  +F+ + E + V W+ II G+      + A+ F+ +M+ S   PN YT    L
Sbjct: 358 GNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSAL 417

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
            +C+ + A+ +GK IH ++ +  ++ +  +  SLI+MYA+ GE++SA  VF++  ++  V
Sbjct: 418 AACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKV 477

Query: 198 -SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
             + A+I G+A  G  ++A  +F++M +  E   PN+ T + +L+AC+H   ++ G    
Sbjct: 478 WPWNAMIGGFAMHGKPEEAINVFEKMKV--EKVSPNKVTFIALLNACSHGYMVKEGKSYF 535

Query: 257 SLIEG-HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR-DVISWNVMIGGYTHTSD 314
            L+   +G+   +     ++D+ S+ G L  + ++  S+    DV  W  ++       D
Sbjct: 536 ELMASDYGINPEIEHYGCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWGALLNACRIYKD 595

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNN 369
            +    + R  +   I+PN +   +VL    Y  +   G+W  A + +   ++N+
Sbjct: 596 MERGYRIGR--IIKEIDPNHIG-CNVLLGNIYSTS---GRWNEARMVREKNEINS 644


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 249/589 (42%), Positives = 360/589 (61%), Gaps = 5/589 (0%)

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           M L G   N   +  +L  C +  AI EG+++HAH++K       ++ T LI  Y +   
Sbjct: 49  MALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDS 108

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
           L  AR VF+    R+ VS+TA+I+ Y+ RGY   A  LF +M        PNE T  TVL
Sbjct: 109 LRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQML--RSGTEPNEFTFATVL 166

Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVI 300
           ++C       LG  + S I      ++++V ++L+DMY+K G + +AR +F+ + +RDV+
Sbjct: 167 TSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVV 226

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           S   +I GY      +EAL LFR++ +  ++ N VT+ SVL A + L ALD GK +H ++
Sbjct: 227 SCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHL 286

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
            ++ +  + V L  SLIDMY+KCGN+  A ++FD +  +T+ SWNAM+ G + HG+  + 
Sbjct: 287 LRS-EVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREV 345

Query: 421 LSLFSRMIGEG-LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ-DYKISPKLQHYGCM 478
           L LF+ MI E  ++PD +T + VLS C+H GL D G   F  M      + P  +HYGC+
Sbjct: 346 LELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGCV 405

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
           VD+LGRAG  + A   +K M  +P AAIW  LLGAC VH  L++GE V   LL++EPEN 
Sbjct: 406 VDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPENA 465

Query: 539 GAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSK 598
           G YV+LSN+YA AGRW+DV ++R  +  K + K PG S IE+  V+H F   D  HP+ +
Sbjct: 466 GNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCSHPRRE 525

Query: 599 HIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTI 658
            +   + E+ A  +++G+VPD S VL+D+DEE KE  L  HSEKLA+ +GLI+T     I
Sbjct: 526 EVSAKVQELSARFKEAGYVPDLSCVLHDVDEEQKEKILLSHSEKLALTFGLIATPESVPI 585

Query: 659 RIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           R++KNLR+C +CH+  K  SKI+ RE+  RD+NRFH    G CSC DYW
Sbjct: 586 RVIKNLRICVDCHNFAKYTSKIYGREVSLRDKNRFHRIVGGKCSCGDYW 634



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/392 (32%), Positives = 216/392 (55%), Gaps = 14/392 (3%)

Query: 35  ALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
            +L++C   + I++   VH+ +IKT      +  ++LI          L  A  VF+ + 
Sbjct: 63  TVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYV--KCDSLRDARHVFDVMP 120

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           E N V W  +I  +S       A+  +V+M+ SG  PN +TF  +L SC   S    G+Q
Sbjct: 121 ERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQ 180

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IH+H++KL  E+  +V +SL++MYA++G++  AR +F     RD VS TA+I+GYA  G 
Sbjct: 181 IHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGL 240

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
            ++A +LF  +  + E    N  T  +VL+A + + +L+ G  V + +    + S + + 
Sbjct: 241 DEEALELFRRL--QREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQ 298

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN-I 330
           N+LIDMYSKCG+L  AR +F+++ +R VISWN M+ GY+   + +E L LF  M+  N +
Sbjct: 299 NSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKV 358

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN---NVSLWTSLIDMYAKCGNIK 387
           +P+ VT L+VL  C++ G  D G  I  + D    K++   +   +  ++DM  + G ++
Sbjct: 359 KPDSVTVLAVLSGCSHGGLEDKGMDI--FYDMTSGKISVQPDSKHYGCVVDMLGRAGRVE 416

Query: 388 AAEQVFDGMGYK-TLASWNAMISGLAMHGKAD 418
           AA +    M ++ + A W  ++   ++H   D
Sbjct: 417 AAFEFVKKMPFEPSAAIWGCLLGACSVHSNLD 448


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 250/562 (44%), Positives = 354/562 (62%), Gaps = 7/562 (1%)

Query: 151 QIHAHVLKLGL-ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           Q+H   L+ GL  SDP+  ++L++MY        AR  F++    + V  TA+ +GY   
Sbjct: 114 QLHLLALRSGLFPSDPYSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRN 173

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
             +  + +LF  M   +   V +E+  +   SA A +    +   + +LI   G   N  
Sbjct: 174 NLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAG 233

Query: 270 VTNALIDMYSKCG--DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
           V N ++D Y+K G  DL  AR +F+++E RDV+SWN MI  Y       EA+ L+ +ML 
Sbjct: 234 VVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQNGMSAEAIGLYSKMLN 292

Query: 328 --SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
               I+ N V   +VL ACA+ GA+  GK IH  + +   +  NV + TS++DMY+KCG 
Sbjct: 293 VGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLE-ENVYVGTSIVDMYSKCGR 351

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           ++ A + F  +  K + SW+AMI+G  MHG+  +AL +F+ M   GL+P+ ITF+ VL+A
Sbjct: 352 VEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAA 411

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           C+HAGLLD GR ++NAM Q++ I   ++HYGCMVDLLGRAG  DEA +L+K M++KPDAA
Sbjct: 412 CSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAA 471

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
           IW +LL ACR+H  +EL E   K L EL+  N G YVLLSN+YA A  W DV  IR  + 
Sbjct: 472 IWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLLVK 531

Query: 566 DKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLY 625
            + ++K PG SS E+   ++ F VGDK HPQ   IY  L+++   ++++G+VP+T  VL+
Sbjct: 532 TRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLH 591

Query: 626 DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREI 685
           D+DEE KE AL  HSEKLA+A+ L+++ P + I I+KNLRVC +CH+A K I+KI  REI
Sbjct: 592 DLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREI 651

Query: 686 IARDRNRFHHFKDGNCSCNDYW 707
           I RD  RFHHFKDG CSC DYW
Sbjct: 652 IIRDLQRFHHFKDGLCSCRDYW 673



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 89/176 (50%), Gaps = 7/176 (3%)

Query: 35  ALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           A+L  C +   +Q  K++H+Q+++ GL    +  + ++++   S  G +  A   F  I+
Sbjct: 306 AVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDM--YSKCGRVEMASRAFRKIK 363

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           E N + W+ +I G+ +      A++ +  M  SG  PN  TF  +L +C+    + EG+ 
Sbjct: 364 EKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRY 423

Query: 152 -IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-DAVSYTALITG 205
             +A   + G+E+    +  ++++  + G L+ A  +  +  ++ DA  + AL++ 
Sbjct: 424 WYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSA 479


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 243/563 (43%), Positives = 359/563 (63%), Gaps = 8/563 (1%)

Query: 150 KQIHAHVLK--LGLESDPFVHTSLINMYAQN--GELESARLVFNKSSLRDAVSYTALITG 205
           +Q+HAH+L   L L S  F  + ++   A +  G +  AR VF +    +  S+ +LI G
Sbjct: 5   RQLHAHILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNSLIKG 64

Query: 206 YASRGYLDDARQLFDEMPIREENF-VPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
           Y+    L     +F    + E  + VPN  T+  VL ACA + +   G  V S +   G 
Sbjct: 65  YSQIHTLSK-EPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGF 123

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
           GS+L V  +L++ Y KC ++  AR +FE +  R++++W  MI G+       EA+ LFR+
Sbjct: 124 GSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFRE 183

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           M ++ I+P+ +T +SV+ ACA  GALD+G W+HAYI+K +  L ++ L T+L+DMYAKCG
Sbjct: 184 MQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEK-YFVLTDLELSTALVDMYAKCG 242

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
            I+ A+QVF  M  K   +W++MI G A HG A  A+  F +M+   + PD +TF+ VLS
Sbjct: 243 CIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLS 302

Query: 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504
           AC H GL+  GR++++ M+ ++ I P ++HYGC VDLL R+GL +EA  +  TM++ P+A
Sbjct: 303 ACAHGGLVSRGRRFWSLML-EFGIEPSVEHYGCKVDLLCRSGLVEEAYRITTTMKIPPNA 361

Query: 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564
           A W SLL  C+    L LGE VA++LLELEP N   Y+++SN+Y+   +W+ ++ +R  +
Sbjct: 362 ATWRSLLMGCKKKKLLNLGEIVARYLLELEPLNAENYIMISNLYSSLSQWEKMSELRKVM 421

Query: 565 NDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVL 624
            +K +K VPGCSSIEV  VVHEF++GD+ HP+ K + E ++E+   +  SG+ P  S+VL
Sbjct: 422 KEKCIKPVPGCSSIEVDGVVHEFVMGDQSHPEVKMLREFMEEMSMRVRDSGYRPSISDVL 481

Query: 625 YDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNRE 684
           + + +E KE ALS HSE+ AIAYGL+ T+    IR+VKNLRVC +CH   K+ISK++ RE
Sbjct: 482 HKVVDEEKECALSEHSERFAIAYGLLKTRAPIVIRVVKNLRVCVDCHEVIKIISKLYERE 541

Query: 685 IIARDRNRFHHFKDGNCSCNDYW 707
           II RDR RFH F  G CSC D+W
Sbjct: 542 IIVRDRVRFHKFIKGTCSCKDFW 564



 Score =  250 bits (639), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 134/376 (35%), Positives = 236/376 (62%), Gaps = 14/376 (3%)

Query: 43  MQNIKQVHSQIIKTGL--HNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNN 100
           M+ ++Q+H+ I+   L   +  FALSK++  CA+SPFG+++YA  VF  I  PN   WN+
Sbjct: 1   MRVLRQLHAHILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNS 60

Query: 101 IIRG----HSLSSSPVVAIKFYVRMILSGF-VPNTYTFPFILKSCAKISAISEGKQIHAH 155
           +I+G    H+LS  P+   K   ++  +G+ VPN++T  F+LK+CA ++A  EG Q+H+H
Sbjct: 61  LIKGYSQIHTLSKEPIFLFK---KLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSH 117

Query: 156 VLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDA 215
           VLK G  S  FV TSL+N Y +  E+  AR VF +  +R+ V++TA+I+G+A  G +D+A
Sbjct: 118 VLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEA 177

Query: 216 RQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALI 275
            +LF EM  ++    P+  T+V+V+SACA  G+L++G W+ + IE + + ++L ++ AL+
Sbjct: 178 MELFREM--QKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALV 235

Query: 276 DMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV 335
           DMY+KCG + +A+ +F  +  +D  +W+ MI G+ +    ++A+  F+QML++ + P+ V
Sbjct: 236 DMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHV 295

Query: 336 TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
           TFL+VL ACA+ G +  G+   + + +   +  +V  +   +D+  + G ++ A ++   
Sbjct: 296 TFLAVLSACAHGGLVSRGRRFWSLMLEFGIE-PSVEHYGCKVDLLCRSGLVEEAYRITTT 354

Query: 396 MGY-KTLASWNAMISG 410
           M      A+W +++ G
Sbjct: 355 MKIPPNAATWRSLLMG 370


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/582 (43%), Positives = 366/582 (62%), Gaps = 6/582 (1%)

Query: 127 VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARL 186
           +P++  + F+L++  ++  +    Q+HAH++  G      + T L+N+    G +   R 
Sbjct: 9   LPHSPAYNFLLQAGPRLYLL---HQVHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQ 65

Query: 187 VFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHM 246
           +F      D+  +T+LI    S+ +      L+    +   N  P+  T  +V+ +CA +
Sbjct: 66  IFLAVPNPDSFLFTSLIKS-TSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADL 124

Query: 247 GSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMI 306
            +L+ G  V   +  HG G +++V  AL+ +Y KCGDL+ AR +F+ I +R +++WN MI
Sbjct: 125 SALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMI 184

Query: 307 GGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK 366
            GY      KEA+ LF +M ++ +EP+  TF+SVL ACA+LGA  LG W+H YI  N   
Sbjct: 185 SGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLD 244

Query: 367 LNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSR 426
           LN V L TSLI+MY +CGN+  A +VFD M  + + +W AMISG   +G   +A+ LF  
Sbjct: 245 LN-VVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHE 303

Query: 427 MIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAG 486
           M   GL P+ ITFV VLSAC HAGL++ GR+ F ++ ++Y + P ++H  C+VD+LGRAG
Sbjct: 304 MRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAG 363

Query: 487 LFDEAEALLKT-MEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545
           L DEA   +K  +   P  AI T++LGAC++H   +LG  VA+HLL  EPENP  YV+LS
Sbjct: 364 LLDEAYNFIKEEIPENPAPAILTAMLGACKMHKNFDLGAQVAEHLLAAEPENPAHYVILS 423

Query: 546 NMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLD 605
           N+YA AGR D V  +R  +  K +KK  G S++EV    + F +GDK H ++  IY  LD
Sbjct: 424 NIYALAGRMDQVEIVRNNMIRKCLKKQVGYSTVEVDQKTYLFSMGDKSHSETNAIYHYLD 483

Query: 606 EIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLR 665
           E+     ++G+VP +  V+++++EE +E AL +HSEKLAIA+GL+ T  GT IRIVKNLR
Sbjct: 484 ELMWKCSEAGYVPVSDSVMHELEEEEREYALRYHSEKLAIAFGLLKTSHGTPIRIVKNLR 543

Query: 666 VCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +C +CHSA K IS I +REII RD+ RFHHFK G+CSC DYW
Sbjct: 544 MCEDCHSAIKFISAISSREIIVRDKLRFHHFKVGSCSCLDYW 585



 Score =  248 bits (633), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 154/483 (31%), Positives = 253/483 (52%), Gaps = 52/483 (10%)

Query: 22  DPPYK-LLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEI-CAVSPFGD 79
            P Y  LLQ  P L LL          QVH+ II +G   ++  L+KL+ + CA    G 
Sbjct: 12  SPAYNFLLQAGPRLYLL---------HQVHAHIIVSGYGRSRSLLTKLLNLACAA---GS 59

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSS-PVVAIKFYVRMILSGFVPNTYTFPFILK 138
           +SY   +F  +  P+  ++ ++I+  S S +  + ++ FY RM+LS   P+ YTF  ++K
Sbjct: 60  ISYTRQIFLAVPNPDSFLFTSLIKSTSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIK 119

Query: 139 SCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVS 198
           SCA +SA+  G+ +H HVL  G   D +V  +L+ +Y + G+L +AR VF+K   R  V+
Sbjct: 120 SCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARKVFDKIRERSIVA 179

Query: 199 YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           + ++I+GY   G+  +A  LFD M  +E    P+ +T V+VLSACAH+G+  LG WV   
Sbjct: 180 WNSMISGYEQNGFAKEAIGLFDRM--KETGVEPDSATFVSVLSACAHLGAFSLGCWVHEY 237

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
           I G+GL  N+ +  +LI+MY +CG++ KAR++F+S+++R+V++W  MI GY       +A
Sbjct: 238 IVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQA 297

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
           + LF +M ++ + PN +TF++VL ACA+ G ++ G+ + A I + +  +  V     L+D
Sbjct: 298 VELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHLVPGVEHNVCLVD 357

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
           M  + G +                               D+A +     I E   P  +T
Sbjct: 358 MLGRAGLL-------------------------------DEAYNFIKEEIPENPAPAILT 386

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
              +L AC      D+G Q    ++     +P   HY  + ++   AG  D+ E +   M
Sbjct: 387 --AMLGACKMHKNFDLGAQVAEHLLAAEPENP--AHYVILSNIYALAGRMDQVEIVRNNM 442

Query: 499 EMK 501
             K
Sbjct: 443 IRK 445


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 244/623 (39%), Positives = 371/623 (59%), Gaps = 25/623 (4%)

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145
           +F+ + + + + WN++I G+  +      +  Y +M+  G   +  T   +L  CA    
Sbjct: 207 LFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGT 266

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
           +S GK +H+  +K   E       +L++MY++ G+L+ A  VF K   R+ VS+T++I G
Sbjct: 267 LSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAG 326

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           Y   G+ D A  L  +M   +E    +   + ++L ACA  GSL+ G  V   I+ + + 
Sbjct: 327 YTRDGWSDGAIILLQQM--EKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMA 384

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
           SNL V NAL+DMY+KCG +  A  +F ++  +D+ISWN M+G                  
Sbjct: 385 SNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG------------------ 426

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
               ++P+  T   +LPACA L AL+ GK IH YI +N    ++  +  +L+D+Y KCG 
Sbjct: 427 ---ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYS-SDRHVANALVDLYVKCGV 482

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           +  A  +FD +  K L SW  MI+G  MHG  ++A++ F+ M   G++PD+++F+ +L A
Sbjct: 483 LGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYA 542

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           C+H+GLL+ G ++F  M  D+ I PKL+HY CMVDLL R G   +A   ++T+ + PDA 
Sbjct: 543 CSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDAT 602

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
           IW +LL  CR++  +EL E VA+ + ELEPEN G YVLL+N+YA A + ++V  +R ++ 
Sbjct: 603 IWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKREEVKRMREKIG 662

Query: 566 DKGMKKVPGCSSIEVGSVVHEFLVGDK-VHPQSKHIYEMLDEIDALLEKSGFVPDTSEVL 624
            KG++K PGCS IE+   V+ F+ G+   HP SK I  +L ++   +++ G+ P T   L
Sbjct: 663 KKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYAL 722

Query: 625 YDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNRE 684
            + DE  KE AL  HSEKLA+A+GL++  P  TIR+ KNLRVCG+CH   K +SK   RE
Sbjct: 723 INADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRRE 782

Query: 685 IIARDRNRFHHFKDGNCSCNDYW 707
           I+ RD NRFHHFKDG CSC  +W
Sbjct: 783 IVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 137/485 (28%), Positives = 233/485 (48%), Gaps = 48/485 (9%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           +++L  C N   +   K VHS  IK+         + L+++   S  GDL  AL VFE +
Sbjct: 255 ISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDM--YSKCGDLDGALRVFEKM 312

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            E N V W ++I G++       AI    +M   G   +      IL +CA+  ++  GK
Sbjct: 313 GERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGK 372

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            +H ++    + S+ FV  +L++MYA+ G +E A  VF+   ++D +S+  ++       
Sbjct: 373 DVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG------ 426

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
                               P+  T+  +L ACA + +LE G  +   I  +G  S+ HV
Sbjct: 427 -----------------ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHV 469

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            NAL+D+Y KCG L  AR LF+ I  +D++SW VMI GY       EA+  F +M  + I
Sbjct: 470 ANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGI 529

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN-NVSLWTSLIDMYAKCGNIKAA 389
           EP++V+F+S+L AC++ G L+ G W   YI KN   +   +  +  ++D+ ++ GN+  A
Sbjct: 530 EPDEVSFISILYACSHSGLLEQG-WRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKA 588

Query: 390 EQVFDGMGYKTLAS-WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
            +  + +     A+ W A++ G  ++   + A  +  R+    L+P++  +  VL A  +
Sbjct: 589 YKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVF--ELEPENTGYY-VLLANIY 645

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGC-MVDLLGRAGLF-----------DEAEALLK 496
           A      R+    M +        ++ GC  +++ GR  LF            + E+LLK
Sbjct: 646 AEAEK--REEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLK 703

Query: 497 TMEMK 501
            M  K
Sbjct: 704 KMRRK 708



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 124/440 (28%), Positives = 207/440 (47%), Gaps = 77/440 (17%)

Query: 130 TYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN 189
           T T+  +L+ CA + ++++GK++H+ +    +  D  +   L++ YA  G+L+  R VF+
Sbjct: 99  TKTYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFD 158

Query: 190 -----------------------KSSL----------------------------RDAVS 198
                                  K S+                            RD +S
Sbjct: 159 TMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVIS 218

Query: 199 YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           + ++I+GY S G  +    ++ +M     +   + +T+++VL  CA+ G+L LG  V SL
Sbjct: 219 WNSMISGYVSNGLTERGLGIYKQMMYLGIDV--DLATIISVLVGCANSGTLSLGKAVHSL 276

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
                    ++ +N L+DMYSKCGDL  A  +FE + +R+V+SW  MI GYT       A
Sbjct: 277 AIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGA 336

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
           ++L +QM +  ++ + V   S+L ACA  G+LD GK +H YI  N+   +N+ +  +L+D
Sbjct: 337 IILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMA-SNLFVCNALMD 395

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
           MYAKCG+++ A  VF  M  K + SWN                     M+GE L+PD  T
Sbjct: 396 MYAKCGSMEGANSVFSTMVVKDIISWNT--------------------MVGE-LKPDSRT 434

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
              +L AC     L+ G++    ++++   S        +VDL  + G+   A  L   +
Sbjct: 435 MACILPACASLSALERGKEIHGYILRN-GYSSDRHVANALVDLYVKCGVLGLARLLFDMI 493

Query: 499 EMKPDAAIWTSLLGACRVHG 518
             K D   WT ++    +HG
Sbjct: 494 PSK-DLVSWTVMIAGYGMHG 512



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 180/399 (45%), Gaps = 72/399 (18%)

Query: 199 YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           Y A I  +   G L++A +L       E        T  +VL  CA + SL  G  V S+
Sbjct: 69  YNAKILHFCQLGDLENAMELVCMCQKSE----LETKTYGSVLQLCAGLKSLTDGKKVHSI 124

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK---------------------- 296
           I+ + +G +  +   L+  Y+ CGDL + R +F+++EK                      
Sbjct: 125 IKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKES 184

Query: 297 -----------------------------RDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
                                        RDVISWN MI GY      +  L +++QM+ 
Sbjct: 185 ICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMY 244

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAY-IDKNHQKLNNVSLWTSLIDMYAKCGNI 386
             I+ +  T +SVL  CA  G L LGK +H+  I  + ++  N S   +L+DMY+KCG++
Sbjct: 245 LGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFS--NTLLDMYSKCGDL 302

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
             A +VF+ MG + + SW +MI+G    G +D A+ L  +M  EG++ D +    +L AC
Sbjct: 303 DGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHAC 362

Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-------- 498
             +G LD G+   +  I+   ++  L     ++D+  + G  + A ++  TM        
Sbjct: 363 ARSGSLDNGKDVHD-YIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISW 421

Query: 499 -----EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
                E+KPD+     +L AC     LE G+ +  ++L 
Sbjct: 422 NTMVGELKPDSRTMACILPACASLSALERGKEIHGYILR 460


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 246/565 (43%), Positives = 349/565 (61%), Gaps = 6/565 (1%)

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
           + EG++IH+ +   G          L++MYA+ G L+ AR +FN    R  VS++A+I  
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGA 60

Query: 206 YASRGYLDDARQLFDEMPIREENFV-PNESTVVTVLSACAHMGSLELGNWVCSLIEGHG- 263
           YA  G   +A  LF  M  R +  V PN  T   V +AC  +  LE G  + +L    G 
Sbjct: 61  YALHGRGQEALLLFHRM--RNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGE 118

Query: 264 -LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
              SN  + NAL++MY +CG L +AR +F++++  D  SW  MI   T   +  EAL LF
Sbjct: 119 LKSSNAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELF 178

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
            +M    I P  VT  SVL ACA  GAL +GK IH+ +D +    ++V   T+L+DMYAK
Sbjct: 179 HRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFH-SSVLAQTALLDMYAK 237

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
           CG+++ + +VF  M  +   SW AMI+ LA HG+ D+AL LF  M  EG+  D  TF+ V
Sbjct: 238 CGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICV 297

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
           L AC+HAGL+    ++F++M++DY I+P   HY   +D +GRAG   +AE L+ +M   P
Sbjct: 298 LRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHP 357

Query: 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562
           +   W +LL ACR+H + E    VA+ L +L PE+  AY LL N+YA  GR+ D   +R 
Sbjct: 358 ETLTWKTLLNACRIHSQAERATKVAELLSKLAPEDSMAYTLLGNVYAATGRYGDQMRVRK 417

Query: 563 RLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSE 622
            + D+G+KKVPG S IEV + VHEF+ GD+ HP    I   L+++   + ++G+VP+T +
Sbjct: 418 GMTDRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKD 477

Query: 623 VLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFN 682
           VL+ ++EE KE  +  HSEKLAIA+GLI+T PGT + IVKNLRVC +CH+ATK+I+KI  
Sbjct: 478 VLHAVNEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMR 537

Query: 683 REIIARDRNRFHHFKDGNCSCNDYW 707
           R I+ RD +RFHHF+DG CSC DYW
Sbjct: 538 RRIVVRDTHRFHHFEDGQCSCKDYW 562



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/400 (28%), Positives = 205/400 (51%), Gaps = 14/400 (3%)

Query: 43  MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNII 102
           M+  +++HS++   G H    A + L+ + A    G L  A  +F  I E   V W+ +I
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYA--KCGCLDEARAIFNGILERTVVSWSAMI 58

Query: 103 RGHSLSSSPVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQIHAHVLKLG- 160
             ++L      A+  + RM   G V PN  TF  +  +C  I  + +G++IHA  +  G 
Sbjct: 59  GAYALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGE 118

Query: 161 -LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLF 219
              S+  +  +L+NMY + G LE AR VF+     DA S+T++IT       L +A +LF
Sbjct: 119 LKSSNAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELF 178

Query: 220 DEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYS 279
             M +  E   P   T+ +VL+ACA  G+L++G  + S ++  G  S++    AL+DMY+
Sbjct: 179 HRMNL--EGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYA 236

Query: 280 KCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS 339
           KCG L  +  +F ++E R+ +SW  MI          EAL LF++M    +  +  TF+ 
Sbjct: 237 KCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFIC 296

Query: 340 VLPACAYLGALDLG-KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
           VL AC++ G +    ++ H+ ++ ++      + +   +D   + G ++ AE++   M +
Sbjct: 297 VLRACSHAGLIKESLEFFHSMVE-DYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPF 355

Query: 399 --KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
             +TL +W  +++   +H +A++A  +   +    L P+D
Sbjct: 356 HPETL-TWKTLLNACRIHSQAERATKVAELL--SKLAPED 392



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 133/267 (49%), Gaps = 8/267 (2%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G L  A  VF+T+  P+   W ++I   + +   + A++ + RM L G  P + T   +L
Sbjct: 138 GSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVL 197

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
            +CA   A+  GKQIH+ +   G  S     T+L++MYA+ G LE +  VF     R++V
Sbjct: 198 NACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSV 257

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL-ELGNWVC 256
           S+TA+I   A  G  D+A +LF EM +  E  V + +T + VL AC+H G + E   +  
Sbjct: 258 SWTAMIAALAQHGQGDEALELFKEMNL--EGMVADATTFICVLRACSHAGLIKESLEFFH 315

Query: 257 SLIEGHGLG-SNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSD 314
           S++E + +  +  H   AL D   + G L  A +L  S+    + ++W  ++      S 
Sbjct: 316 SMVEDYAIAPTETHYCRAL-DTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQ 374

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVL 341
            + A  +    L S + P D    ++L
Sbjct: 375 AERATKVAE--LLSKLAPEDSMAYTLL 399


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 264/709 (37%), Positives = 409/709 (57%), Gaps = 13/709 (1%)

Query: 5   PSSLTLSPSILHFP---PSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKT--GLH 59
           P+   L+P+  H P    SS   + L      L + +   N++  K +H+ +I T     
Sbjct: 2   PTLRLLAPT--HKPFLLKSSTVGHPLEHTIQLLKVSADTKNLKFGKMIHAHLIITNQATK 59

Query: 60  NTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYV 119
           +    ++ LI + A      +  A ++F+ +R+ N V W  ++ G+  +   +  ++ + 
Sbjct: 60  DNIVQVNSLINLYA--KCDQIMVARILFDGMRKRNVVSWGALMAGYFHNGLVLEVLRLFK 117

Query: 120 RMILSGFV-PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN 178
            MI   ++ PN Y F  I+ SC+    + EG Q H + LK GL    +V  +LI MY++ 
Sbjct: 118 TMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRR 177

Query: 179 GELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVT 238
            +++ A  V+ +    D  SY  +I G    GY  +A ++ D M   +E  V +  T VT
Sbjct: 178 SDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMV--DECIVWDNVTYVT 235

Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD 298
               C+H+  L LG  V   +   G   +  V++A+IDMY KCG+++ AR +F  ++ ++
Sbjct: 236 AFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKN 295

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
           V+SW  ++  Y+    ++EAL  F +M    + PN+ TF  +L +CA + AL  GK +H 
Sbjct: 296 VVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHT 355

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKAD 418
            I K+  + +++ +  +LI+MY+K G+I+AA +VF  M  +   +W+AMI GL+ HG   
Sbjct: 356 RIKKSGFE-DHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGR 414

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478
           +AL +F  M+     P  +TFVGVLSAC H G +  G  Y N +++   I P ++HY C+
Sbjct: 415 EALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCI 474

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
           V LL +AG  DEAE  +K+  +K D   W +LL AC VH    LG+ VA+ +L+++P + 
Sbjct: 475 VGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPGDV 534

Query: 539 GAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSK 598
           G Y+LLSNMYA A RWD V  IR  + ++ +KK PG S IE+ + +H F+   K HP+S 
Sbjct: 535 GTYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSIHVFVSEGKTHPESN 594

Query: 599 HIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTI 658
            IYE + E+  ++   G+VPD + V +D+++E K   +S+HSEKLAIAYGL+ T  G  I
Sbjct: 595 QIYEKVQELLTMIRPMGYVPDIAAVFHDVEDEQKREYVSYHSEKLAIAYGLMKTPSGAPI 654

Query: 659 RIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           R++KNLR+C +CHSA KLISK+ NR II RD NRFH F DG CSC DYW
Sbjct: 655 RVIKNLRMCVDCHSAVKLISKVTNRMIIVRDANRFHCFGDGGCSCADYW 703


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 265/663 (39%), Positives = 399/663 (60%), Gaps = 13/663 (1%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEICAVSPF-GDLSYALLVFETIREPNQVIWNNIIRGHS 106
           QVH+ I+K G   T F  + LI +   S   GD   A  VF+++   + V WN +I G++
Sbjct: 226 QVHAMIVKNGFEFTTFVCNALICMYLKSEMVGD---AEAVFDSMVVRDSVTWNIMIGGYA 282

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
                +   + + RM L+G   +   F   LK C++   ++  KQ+H  V+K G E    
Sbjct: 283 AIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQD 342

Query: 167 VHTSLINMYAQNGELESARLVFNKS-SLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           + T+L+  Y++   ++ A  +F+ + +  + V++TA+I G+      + A  LF +M   
Sbjct: 343 IRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMS-- 400

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
            E   PN  T  TVL   A   S  L      +I+ +       V  AL+D Y K G++V
Sbjct: 401 REGVRPNHFTYSTVL---AGKPSSLLSQLHAQIIKAY-YEKVPSVATALLDAYVKTGNVV 456

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
           ++  +F SI  +D+++W+ M+ G   T D ++A+ +F Q+++  ++PN+ TF SV+ AC+
Sbjct: 457 ESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACS 516

Query: 346 YLGA-LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
              A ++ GK IHA   K+  K N + + ++L+ MY+K GNI++AE+VF     + + SW
Sbjct: 517 SSAATVEHGKQIHATAVKS-GKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSW 575

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
           N+MI+G   HG A KAL +F  M  +GL  DD+TF+GVL+AC HAGL++ G +YFN MI+
Sbjct: 576 NSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIK 635

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGE 524
           DY I  K++HY CMVDL  RAG+FD+A  ++  M       IW +LL ACRVH  LELG+
Sbjct: 636 DYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGK 695

Query: 525 SVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVV 584
             A+ L+ L+P +   YVLLSN++A AG W++ A +R  ++++ +KK  GCS IE+ + +
Sbjct: 696 LAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRI 755

Query: 585 HEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLA 644
             FL GD  HP S  +Y  L+E+   L+  G+ PDT+ V +D++EE KE  LS HSE+LA
Sbjct: 756 FSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSERLA 815

Query: 645 IAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCN 704
           IAYGLI+  PG  I+I KNLR+CG+CH+  +LIS I  R +I RD NRFHHFK G CSC 
Sbjct: 816 IAYGLIALPPGAPIQIEKNLRICGDCHNVIELISLIEERTLIVRDSNRFHHFKGGVCSCG 875

Query: 705 DYW 707
            YW
Sbjct: 876 GYW 878



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 131/475 (27%), Positives = 239/475 (50%), Gaps = 15/475 (3%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +QVH Q +K+G        + L+++   +   D      +F+ +   N V W +++ G++
Sbjct: 124 RQVHCQSLKSGFLEDVSVGTSLVDMYMKTE--DFEDGRGIFDEMGIKNVVSWTSLLSGYA 181

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +      I    +M + G  PN +TF  +L + A  S I  G Q+HA ++K G E   F
Sbjct: 182 RNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTF 241

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V  +LI MY ++  +  A  VF+   +RD+V++  +I GYA+ G+  +  Q+F  M  R 
Sbjct: 242 VCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRM--RL 299

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
                + +   T L  C+    L     +   +  +G      +  AL+  YSKC  + +
Sbjct: 300 AGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDE 359

Query: 287 ARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
           A  LF   +   +V++W  MIGG+   ++ ++A+ LF QM +  + PN  T+ +VL    
Sbjct: 360 AFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAG-- 417

Query: 346 YLGALDLGKWIHAYIDKN-HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
                 L   +HA I K  ++K+ +V+  T+L+D Y K GN+  + +VF  +  K + +W
Sbjct: 418 --KPSSLLSQLHAQIIKAYYEKVPSVA--TALLDAYVKTGNVVESARVFYSIPAKDIVAW 473

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC-NHAGLLDIGRQYFNAMI 463
           +AM++GLA    ++KA+ +F +++ EG++P++ TF  V++AC + A  ++ G+Q     +
Sbjct: 474 SAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAV 533

Query: 464 QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           +  K S  L     ++ +  + G  + AE +    E + D   W S++     HG
Sbjct: 534 KSGK-SNALCVSSALLTMYSKKGNIESAEKVFTRQEER-DIVSWNSMITGYGQHG 586



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 120/431 (27%), Positives = 209/431 (48%), Gaps = 10/431 (2%)

Query: 82  YALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCA 141
           YA  +F+     +   +N ++   S ++    A+  +  +  SG   +  T    LK C 
Sbjct: 56  YAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCG 115

Query: 142 KISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTA 201
            +     G+Q+H   LK G   D  V TSL++MY +  + E  R +F++  +++ VS+T+
Sbjct: 116 VLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTS 175

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
           L++GYA  G  D+   L ++M +   N  PN  T  TVL A A    +E G  V ++I  
Sbjct: 176 LLSGYARNGLNDEVIHLINQMQMEGVN--PNGFTFATVLGALADESIIEGGVQVHAMIVK 233

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALML 321
           +G      V NALI MY K   +  A  +F+S+  RD ++WN+MIGGY     Y E   +
Sbjct: 234 NGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQM 293

Query: 322 FRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381
           F +M  + ++ +   F + L  C+    L+  K +H  + KN  +     + T+L+  Y+
Sbjct: 294 FHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQ-DIRTALMVTYS 352

Query: 382 KCGNIKAAEQVFD-GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFV 440
           KC ++  A ++F        + +W AMI G   +   +KA+ LF +M  EG++P+  T+ 
Sbjct: 353 KCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYS 412

Query: 441 GVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEM 500
            VL+    + L  +  Q   A    Y+  P +     ++D   + G   E+  +  ++  
Sbjct: 413 TVLAGKPSSLLSQLHAQIIKAY---YEKVPSVA--TALLDAYVKTGNVVESARVFYSIPA 467

Query: 501 KPDAAIWTSLL 511
           K D   W+++L
Sbjct: 468 K-DIVAWSAML 477



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 120/229 (52%), Gaps = 7/229 (3%)

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A  LF+    +D+  +N ++  ++  +  +EAL LF+ +  S +  + +T    L  C  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
           L    +G+ +H    K+   L +VS+ TSL+DMY K  + +    +FD MG K + SW +
Sbjct: 117 LFDQVVGRQVHCQSLKS-GFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTS 175

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
           ++SG A +G  D+ + L ++M  EG+ P+  TF  VL A     +++ G Q  +AMI   
Sbjct: 176 LLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQ-VHAMI--V 232

Query: 467 KISPKLQHYGC--MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
           K   +   + C  ++ +  ++ +  +AEA+  +M ++ D+  W  ++G 
Sbjct: 233 KNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVR-DSVTWNIMIGG 280



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 88/218 (40%), Gaps = 37/218 (16%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           A  S    +++ KQ+H+  +K+G  N     S L+ +   S  G++  A  VF    E +
Sbjct: 514 ACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTM--YSKKGNIESAEKVFTRQEERD 571

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
            V WN++I G+        A++ +  M   G   +  TF  +L +C     + EG++   
Sbjct: 572 IVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEK--- 628

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
                           +I  Y  + ++E                Y+ ++  Y+  G  D 
Sbjct: 629 ------------YFNIMIKDYHIDKKIE---------------HYSCMVDLYSRAGMFDK 661

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
           A  + + MP     F  + +   T+L+AC    +LELG
Sbjct: 662 AMDIINGMP-----FPASPTIWRTLLAACRVHRNLELG 694


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/534 (43%), Positives = 346/534 (64%), Gaps = 42/534 (7%)

Query: 174 MYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
           MYA+ G ++ AR  F+++ LRD      ++  Y SR  + +AR++FD MP+R+       
Sbjct: 1   MYAKAGRVDLARDAFDEAPLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPMRD------- 53

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
                            L +W                 N +I  Y+  G++  AR++F+ 
Sbjct: 54  -----------------LVSW-----------------NTMIHGYAMRGEVGLAREIFDG 79

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
            E RD  SW+ MI  Y  +   KEAL L+R+M  ++I P+ +T +SV+ AC+ LGAL +G
Sbjct: 80  TEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVG 139

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAM 413
             +H +++ N  +L+ + L T+LIDMYAKCG+I++A++VFD M  K + +W++MI GLA 
Sbjct: 140 AEVHRFVESNRIELD-LKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLAN 198

Query: 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQ 473
           HG   ++LSLFS+MI EG++P+ +TFVGVL AC H GL+  G++YF +M + + I P ++
Sbjct: 199 HGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVE 258

Query: 474 HYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL 533
           HYGCMVDLLGR+G  +EA  L+++M  +PD  IW +LLGACR+H  +E+ E     L  L
Sbjct: 259 HYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVL 318

Query: 534 EPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKV 593
           +P   G YVLLSN+YA A  W+ VA +R  +    ++++PG SSIE    +HEF+ GD++
Sbjct: 319 DPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFVSGDRL 378

Query: 594 HPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTK 653
           HP+SK IY +L+E+   L+++G+ P T  VL D+DE+ KE +L+ HSEKLAIA+ L++T 
Sbjct: 379 HPRSKEIYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQSKERSLAEHSEKLAIAFALLTTP 438

Query: 654 PGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
             +TIRI KNLR C +CHSA KLIS +++R++I RDRNRFHHF +G CSC DYW
Sbjct: 439 ARSTIRITKNLRACEDCHSAMKLISLVYDRKLIVRDRNRFHHFSEGQCSCKDYW 492



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 150/294 (51%), Gaps = 30/294 (10%)

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
           D F+   ++  Y    E+  AR VF+   +RD VS+  +I GYA RG +  AR++FD   
Sbjct: 22  DVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTE 81

Query: 224 IRE-----------------------------ENFVPNESTVVTVLSACAHMGSLELGNW 254
            R+                              + +P+  T+V+V+SAC+ +G+L +G  
Sbjct: 82  DRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAE 141

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           V   +E + +  +L +  ALIDMY+KCGD+  A+ +F+ + ++DV +W+ MI G  +   
Sbjct: 142 VHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGL 201

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
             E+L LF +M+   ++PN VTF+ VL AC ++G +  GK     +++ H     V  + 
Sbjct: 202 GHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYG 261

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRM 427
            ++D+  + G+++ A Q+   M ++     W A++    +H   + A    +++
Sbjct: 262 CMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKL 315



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 125/233 (53%), Gaps = 4/233 (1%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G++  A  +F+   + +   W+++I  ++ S     A++ +  M  +  +P+  T   ++
Sbjct: 68  GEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVV 127

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
            +C+ + A++ G ++H  V    +E D  + T+LI+MYA+ G++ESA+ VF++   +D  
Sbjct: 128 SACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQ 187

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVC 256
           +++++I G A+ G   ++  LF +M    E   PN  T V VL AC H+G +  G  +  
Sbjct: 188 TWSSMIIGLANHGLGHESLSLFSKMI--SEGMKPNGVTFVGVLIACTHVGLVSEGKKYFR 245

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGG 308
           S+ E HG+   +     ++D+  + G + +AR L  S+  + D I W  ++G 
Sbjct: 246 SMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGA 298


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 276/777 (35%), Positives = 411/777 (52%), Gaps = 122/777 (15%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN------------ 94
           + VH+ I+ +G     F L++LI I   S   +++YA  +F+ I +P+            
Sbjct: 25  RAVHAHILTSGFKPNTFILNRLINIYCKS--SNITYARKLFDKIPKPDIVARTTLLSAYS 82

Query: 95  ---------------------QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTF 133
                                 V +N +I  +S  +    A+  +V+M   GF+P+ +TF
Sbjct: 83  SSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTF 142

Query: 134 PFILKSCAKISAISEGKQ-IHAHVLKLG-----------------LESDPFVH------- 168
             +L + + I+      Q +H  V+KLG                   S P V        
Sbjct: 143 SSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMAS 202

Query: 169 ------------------TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
                             T++I  Y +N +L +AR + +  +    V++ A+I+GY  RG
Sbjct: 203 ARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRG 262

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACA----HMGSLELGNWVCSLIEGHGLGS 266
             ++A   F  M         +E T  +++SAC      MG    G  V   I    +  
Sbjct: 263 LYEEAFDTFRRM--HSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEP 320

Query: 267 NLH----VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA---- 318
           + H    V NALI  Y+K   +++AR +F+ +  RD+ISWN ++ GY +    +EA    
Sbjct: 321 SHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIF 380

Query: 319 ---------------------------LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALD 351
                                      L LF QM    +EP D  F   + AC+ LG+LD
Sbjct: 381 SEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLD 440

Query: 352 LGKWIHAYIDK-NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISG 410
            G+ IH+ + +  H   + +S   +LI MY++CG +++AE VF  M Y    SWNAMI+ 
Sbjct: 441 NGQQIHSQVIRLGHD--SGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAA 498

Query: 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470
           LA HG   KA+ LF +M+ E + PD ITF+ +L+ACNHAGL+  GR YF+ M   Y I+P
Sbjct: 499 LAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITP 558

Query: 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHL 530
              HY  ++DLL RAG+F +A++++K+M  +  A IW +LL  CR+HG +ELG   A  L
Sbjct: 559 GEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRL 618

Query: 531 LELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVG 590
           LEL P   G Y++LSNMYA  G+WD+VA +R  + ++G+KK PGCS +EV ++VH FLV 
Sbjct: 619 LELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVEVENMVHVFLVD 678

Query: 591 DKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLI 650
           D  HP+ + +Y  L ++   ++K G+VPDT  VL+DM+ E KE +LS HSEKLA+ YG++
Sbjct: 679 DARHPEVQAVYTYLQQLVNEMKKLGYVPDTKFVLHDMESEHKEHSLSTHSEKLAVVYGIM 738

Query: 651 STKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
               G TIR+ KNLR+CG+CH+A K ISK+  REI+ RDR RFHHFK+G CSC +YW
Sbjct: 739 KLPLGATIRVFKNLRICGDCHNAFKYISKVVEREIVVRDRKRFHHFKNGECSCGNYW 795



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 138/512 (26%), Positives = 234/512 (45%), Gaps = 101/512 (19%)

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
           +S++ ++A   +  ++ SGF PNT+    ++    K S I+  +++   + K     D  
Sbjct: 17  VSTTQIIARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPK----PDIV 72

Query: 167 VHTSLINMYAQNGELESARLVFNKS--SLRDAVSYTALITGYASRGYLDDARQLFDEMPI 224
             T+L++ Y+ +G ++ A+ +FN +  ++RD VSY A+IT Y+       A  LF +M  
Sbjct: 73  ARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQM-- 130

Query: 225 REENFVPNESTVVTVLSACAHMGSLELGNWV--CSLIEGHGLGSNL--HVTNALIDMYSK 280
           +   F+P+  T  +VLSA + +   E    +  C +I+   LG+ L   VTNAL+  Y  
Sbjct: 131 KRYGFLPDPFTFSSVLSALSLIADEERHCQMLHCEVIK---LGTLLIPSVTNALLSCYVC 187

Query: 281 CG------------------------------------------DLVKARDLFESIEKRD 298
           C                                           DLV AR+L + +    
Sbjct: 188 CASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPI 247

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA----YLGALDLGK 354
            ++WN MI GY     Y+EA   FR+M    I+ ++ T+ S++ AC      +G  + G+
Sbjct: 248 DVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGR 307

Query: 355 WIHAYIDKNHQKLNN---VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA----- 406
            +H YI +   + ++   +S+  +LI  Y K   +  A +VFD M  + + SWNA     
Sbjct: 308 QVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGY 367

Query: 407 --------------------------MISGLAMHGKADKALSLFSRMIGEGLQPDDITFV 440
                                     MISGLA +G  ++ L LF++M  EGL+P D  F 
Sbjct: 368 VNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFA 427

Query: 441 GVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEM 500
           G ++AC+  G LD G+Q  + +I+    S  L     ++ +  R G+ + AE++  TM  
Sbjct: 428 GAITACSVLGSLDNGQQIHSQVIRLGHDS-GLSAGNALITMYSRCGVVESAESVFLTMPY 486

Query: 501 KPDAAIWTSLLGACRVHGR----LELGESVAK 528
             D+  W +++ A   HG     +EL E + K
Sbjct: 487 -VDSVSWNAMIAALAQHGHGVKAIELFEQMMK 517


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/585 (42%), Positives = 364/585 (62%), Gaps = 21/585 (3%)

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNG-----ELESARLVFNK- 190
           L  C  + A++   Q+HA  +K GL++ P   T L+ +    G     +L  AR VF++ 
Sbjct: 38  LPQCTTLRALA---QLHAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQVFDRI 94

Query: 191 SSLRDAVSYTALITGYA-------SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC 243
               D V Y  L+ GYA       +R   ++A ++F  M   EE   P+  T V++L AC
Sbjct: 95  PGPGDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRM--LEEGVAPDTYTFVSLLKAC 152

Query: 244 AHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN 303
           A   + E G     +    G   + +V   LI+MY++CGD   AR +F  ++   V+S+N
Sbjct: 153 AAARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVVSYN 212

Query: 304 VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363
            MI     +S   EAL+LFR+M    ++   VT +SVL ACA LGAL+LG+WIH Y+ K 
Sbjct: 213 AMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEYVRKV 272

Query: 364 HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSL 423
            Q  + V + T+LIDMY KCG+++ A  VF GM  +   +W+ MI   A H    +A+SL
Sbjct: 273 -QLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSYGREAISL 331

Query: 424 FSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLG 483
           F  M  +G++PDD+TF+GVL AC+H+GL+  G QYF++M +++ + P ++HYGC+ DLL 
Sbjct: 332 FEEMKKQGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSM-REFGLVPGIKHYGCVADLLA 390

Query: 484 RAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVL 543
           R+G  D A   +  + +KP A +W +LL AC   G  +LG+ V + +LEL+  + G YV+
Sbjct: 391 RSGQLDRAYEFIDELPIKPTAILWRTLLSACGSRGDADLGKQVFERILELDDSHGGDYVI 450

Query: 544 LSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEM 603
            SN+ A  GRW+++  +R  +N+KG+ KVPGCSSIEV + VHEF  GD  HP+S     M
Sbjct: 451 FSNLCANTGRWEEMNRVRKLMNEKGVVKVPGCSSIEVDNRVHEFFAGDGRHPKSLDARRM 510

Query: 604 LDEIDALLEKSGFVPDTSEVLY-DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVK 662
           +D +   L+ +G+VP+TS V + +M EE K  +L +HSEKLAI++GL++T PGTT+R+VK
Sbjct: 511 VDGVIEQLKLAGYVPNTSHVFHVEMGEEEKAVSLRYHSEKLAISFGLLNTSPGTTLRVVK 570

Query: 663 NLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           NLRVC +CHS  KL+S +FNR II RD NRFHHF+DG CSC DYW
Sbjct: 571 NLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 615



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 153/446 (34%), Positives = 234/446 (52%), Gaps = 26/446 (5%)

Query: 1   MALPPSSLTLSPSILHFPPSSDPPYKLL---QNQPSLALLSKCTNMQNIKQVHSQIIKTG 57
           M  PP + T +P +L  P  S  P       Q  P L  L +CT ++ + Q+H+  +K+G
Sbjct: 1   MLSPPLAATPTPFLL--PAKSKSPLAAAPAAQQHPLLPYLPQCTTLRALAQLHAAAVKSG 58

Query: 58  LHNTQFALSKLIEIC----AVSPFGDLSYALLVFETIREPNQVIW-NNIIRGHSLSSS-- 110
           L      +++L+ +C    A  P   LSYA  VF+ I  P  V+W N ++RG++  S+  
Sbjct: 59  LQAHPAFVTRLLTLCTDQGAAKP-AQLSYARQVFDRIPGPGDVVWYNTLLRGYARCSAAG 117

Query: 111 ---PVV--AIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
              P    A + +VRM+  G  P+TYTF  +LK+CA   A  EG+Q H   +K+G     
Sbjct: 118 GARPPAEEAARVFVRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHGVAVKVGAAEHE 177

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           +V  +LINMYA+ G+  +AR +F +      VSY A+IT         +A  LF EM  +
Sbjct: 178 YVLPTLINMYAECGDARAARTMFGRVDGECVVSYNAMITAAVRSSRPGEALVLFREM--Q 235

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
            +       T+++VLSACA +G+LELG W+   +    L S + V  ALIDMY KCG L 
Sbjct: 236 AKGLKLTSVTLISVLSACALLGALELGRWIHEYVRKVQLDSLVKVNTALIDMYGKCGSLE 295

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
            A  +F+ +E RD  +W+VMI  Y + S  +EA+ LF +M +  I+P+DVTFL VL AC+
Sbjct: 296 DAISVFQGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYACS 355

Query: 346 YLGALDLGKWIHAYID--KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
           + G +  G     Y D  +    +  +  +  + D+ A+ G +  A +  D +  K  A 
Sbjct: 356 HSGLVSEGL---QYFDSMREFGLVPGIKHYGCVADLLARSGQLDRAYEFIDELPIKPTAI 412

Query: 404 -WNAMISGLAMHGKADKALSLFSRMI 428
            W  ++S     G AD    +F R++
Sbjct: 413 LWRTLLSACGSRGDADLGKQVFERIL 438


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 264/682 (38%), Positives = 409/682 (59%), Gaps = 17/682 (2%)

Query: 36  LLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEI---CAVSPFGDLSYALLVFET 89
           +L  C+ + +++    +H+     GLH   F  + LI++   CA   FG    A  VF  
Sbjct: 106 VLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCA--RFGP---ARNVFAK 160

Query: 90  IREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI-LSGFVPNTYTFPFILKSCAKISAISE 148
           +   + V WN ++ G++       AI   + M    G  PN  T   +L   A+  A+ +
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220

Query: 149 GKQIHAHVLKLGLESDP---FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
           G  IHA+ L+  LE +     + T+L++MYA+  +L  A  VF+   +R+ V+++ALI G
Sbjct: 221 GTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGG 280

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           +     + +A  LF +M +    F+ + ++V + L  CA +  L +G  + +LI   G+ 
Sbjct: 281 FVLCDRMTEAFNLFKDMLVEGLCFL-SATSVASALRVCASLADLHMGTQLHALIAKSGIH 339

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
           ++L  +N+L+ MY+K G + +A   F+ I  +D IS+  ++ G       +EA ++F++M
Sbjct: 340 ADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKM 399

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
              N+EP+  T +S++PAC++L AL  GK  H  +      L   S+  SLIDMYAKCG 
Sbjct: 400 QACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLAL-ETSICNSLIDMYAKCGK 458

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           I  + QVFD M  + + SWN MI+G  +HG   +A +LF  M  +G  PDD+TF+ +++A
Sbjct: 459 IDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAA 518

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           C+H+GL+  G+ +F+ M   Y I P+++HY CMVDLL R GL DEA   +++M +K D  
Sbjct: 519 CSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVR 578

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
           +W +LLGACR+H  ++LG+ V++ + +L PE  G +VLLSN+++ AGR+D+ A +R    
Sbjct: 579 VWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQK 638

Query: 566 DKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLY 625
            KG KK PG S IE+   +H F+ GD+ HP S+ IY  LD I   ++K G+  DTS VL 
Sbjct: 639 VKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDNIMVDIKKLGYQADTSFVLQ 698

Query: 626 DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREI 685
           D++EE KE AL +HSEKLAIA+G++S     TI + KNLRVCG+CH+A K ++ + NR I
Sbjct: 699 DLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTI 758

Query: 686 IARDRNRFHHFKDGNCSCNDYW 707
           I RD NRFHHFK+G CSC ++W
Sbjct: 759 IVRDTNRFHHFKNGQCSCGNFW 780



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 142/448 (31%), Positives = 225/448 (50%), Gaps = 14/448 (3%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G L+ A  VF+ I  P+   +N +IR +S       AI  Y  M+     PN YTFPF+L
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
           K+C+ +  +  G+ IHAH    GL +D FV T+LI++Y +      AR VF K  +RD V
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVV 167

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           ++ A++ GYA+ G    A     +M        PN ST+V++L   A  G+L  G  + +
Sbjct: 168 AWNAMLAGYANHGMYHHAIAHLLDMQ-DHGGLRPNASTLVSLLPLLAQHGALFQGTSIHA 226

Query: 258 LIEGHGLGSN---LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
                 L  N   + +  AL+DMY+KC  LV A  +F  +  R+ ++W+ +IGG+     
Sbjct: 227 YCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDR 286

Query: 315 YKEALMLFRQMLQSNIEPNDVTFL-SVLPACAYLGALDLGKWIHAYIDKN--HQKLNNVS 371
             EA  LF+ ML   +     T + S L  CA L  L +G  +HA I K+  H  L   +
Sbjct: 287 MTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADL---T 343

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
              SL+ MYAK G I  A   FD +  K   S+ A++SG   +GKA++A  +F +M    
Sbjct: 344 ASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACN 403

Query: 432 LQPDDITFVGVLSACNHAGLLDIGR-QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
           ++PD  T V ++ AC+H   L  G+  + + +I+   +   +     ++D+  + G  D 
Sbjct: 404 MEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSI--CNSLIDMYAKCGKIDL 461

Query: 491 AEALLKTMEMKPDAAIWTSLLGACRVHG 518
           +  +   M  + D   W +++    +HG
Sbjct: 462 SRQVFDKMPAR-DVVSWNTMIAGYGIHG 488



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 179/371 (48%), Gaps = 10/371 (2%)

Query: 172 INMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVP 231
           +  +   G+L  AR VF++    DA +Y ALI  Y+  G    A  L+  M        P
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSM--LRFRVAP 98

Query: 232 NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLF 291
           N+ T   VL AC+ +  L  G  + +     GL ++L V+ ALID+Y +C     AR++F
Sbjct: 99  NKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVF 158

Query: 292 ESIEKRDVISWNVMIGGYTHTSDYKEALM-LFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350
             +  RDV++WN M+ GY +   Y  A+  L        + PN  T +S+LP  A  GAL
Sbjct: 159 AKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGAL 218

Query: 351 DLGKWIHAYIDKN--HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI 408
             G  IHAY  +    Q    V + T+L+DMYAKC  +  A +VF GM  +   +W+A+I
Sbjct: 219 FQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALI 278

Query: 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVG-VLSACNHAGLLDIGRQYFNAMIQDYK 467
            G  +  +  +A +LF  M+ EGL     T V   L  C     L +G Q  +A+I    
Sbjct: 279 GGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQ-LHALIAKSG 337

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
           I   L     ++ +  +AGL +EA      + +K D   + +LL  C  +G+ E    V 
Sbjct: 338 IHADLTASNSLLSMYAKAGLINEATMFFDEIAVK-DTISYGALLSGCVQNGKAEEAFLVF 396

Query: 528 KHL--LELEPE 536
           K +    +EP+
Sbjct: 397 KKMQACNMEPD 407



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 73/176 (41%), Gaps = 8/176 (4%)

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
           W   ++ +   G +  A QVFD +      ++NA+I   +  G    A+ L+  M+   +
Sbjct: 37  WQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRV 96

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
            P+  TF  VL AC+    L  GR   +A      +   L     ++DL  R   F  A 
Sbjct: 97  APNKYTFPFVLKACSALVDLRAGRT-IHAHAAAAGLHTDLFVSTALIDLYIRCARFGPAR 155

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE---NPGAYVLLS 545
            +   M M+ D   W ++L     HG   +      HLL+++      P A  L+S
Sbjct: 156 NVFAKMPMR-DVVAWNAMLAGYANHG---MYHHAIAHLLDMQDHGGLRPNASTLVS 207


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 264/682 (38%), Positives = 409/682 (59%), Gaps = 17/682 (2%)

Query: 36  LLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEI---CAVSPFGDLSYALLVFET 89
           +L  C+ + +++    +H+     GLH   F  + LI++   CA   FG    A  VF  
Sbjct: 106 VLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCA--RFGP---ARNVFAK 160

Query: 90  IREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI-LSGFVPNTYTFPFILKSCAKISAISE 148
           +   + V WN ++ G++       AI   + M    G  PN  T   +L   A+  A+ +
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220

Query: 149 GKQIHAHVLKLGLESDP---FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
           G  IHA+ L+  LE +     + T+L++MYA+  +L  A  VF+   +R+ V+++ALI G
Sbjct: 221 GTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGG 280

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           +     + +A  LF +M +    F+ + ++V + L  CA +  L +G  + +LI   G+ 
Sbjct: 281 FVLCDRMTEAFNLFKDMLVEGLCFL-SATSVASALRVCASLADLHMGTQLHALIAKSGIH 339

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
           ++L  +N+L+ MY+K G + +A   F+ I  +D IS+  ++ G       +EA ++F++M
Sbjct: 340 ADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKM 399

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
              N+EP+  T +S++PAC++L AL  GK  H  +      L   S+  SLIDMYAKCG 
Sbjct: 400 QACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLAL-ETSICNSLIDMYAKCGK 458

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           I  + QVFD M  + + SWN MI+G  +HG   +A +LF  M  +G  PDD+TF+ +++A
Sbjct: 459 IDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAA 518

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           C+H+GL+  G+ +F+ M   Y I P+++HY CMVDLL R GL DEA   +++M +K D  
Sbjct: 519 CSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVR 578

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
           +W +LLGACR+H  ++LG+ V++ + +L PE  G +VLLSN+++ AGR+D+ A +R    
Sbjct: 579 VWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQK 638

Query: 566 DKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLY 625
            KG KK PG S IE+   +H F+ GD+ HP S+ IY  LD I   ++K G+  DTS VL 
Sbjct: 639 VKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDNIMVDIKKLGYQADTSFVLQ 698

Query: 626 DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREI 685
           D++EE KE AL +HSEKLAIA+G++S     TI + KNLRVCG+CH+A K ++ + NR I
Sbjct: 699 DLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTI 758

Query: 686 IARDRNRFHHFKDGNCSCNDYW 707
           I RD NRFHHFK+G CSC ++W
Sbjct: 759 IVRDTNRFHHFKNGQCSCGNFW 780



 Score =  209 bits (531), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 142/448 (31%), Positives = 225/448 (50%), Gaps = 14/448 (3%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G L+ A  VF+ I  P+   +N +IR +S       AI  Y  M+     PN YTFPF+L
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
           K+C+ +  +  G+ IHAH    GL +D FV T+LI++Y +      AR VF K  +RD V
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVV 167

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           ++ A++ GYA+ G    A     +M        PN ST+V++L   A  G+L  G  + +
Sbjct: 168 AWNAMLAGYANHGMYHHAIAHLLDMQ-DHGGLRPNASTLVSLLPLLAQHGALFQGTSIHA 226

Query: 258 LIEGHGLGSN---LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
                 L  N   + +  AL+DMY+KC  LV A  +F  +  R+ ++W+ +IGG+     
Sbjct: 227 YCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDR 286

Query: 315 YKEALMLFRQMLQSNIEPNDVTFL-SVLPACAYLGALDLGKWIHAYIDKN--HQKLNNVS 371
             EA  LF+ ML   +     T + S L  CA L  L +G  +HA I K+  H  L   +
Sbjct: 287 MTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADL---T 343

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
              SL+ MYAK G I  A   FD +  K   S+ A++SG   +GKA++A  +F +M    
Sbjct: 344 ASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACN 403

Query: 432 LQPDDITFVGVLSACNHAGLLDIGR-QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
           ++PD  T V ++ AC+H   L  G+  + + +I+   +   +     ++D+  + G  D 
Sbjct: 404 MEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSI--CNSLIDMYAKCGKIDL 461

Query: 491 AEALLKTMEMKPDAAIWTSLLGACRVHG 518
           +  +   M  + D   W +++    +HG
Sbjct: 462 SRQVFDKMPAR-DVVSWNTMIAGYGIHG 488



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 179/371 (48%), Gaps = 10/371 (2%)

Query: 172 INMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVP 231
           +  +   G+L  AR VF++    DA +Y ALI  Y+  G    A  L+  M        P
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSM--LRFRVAP 98

Query: 232 NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLF 291
           N+ T   VL AC+ +  L  G  + +     GL ++L V+ ALID+Y +C     AR++F
Sbjct: 99  NKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVF 158

Query: 292 ESIEKRDVISWNVMIGGYTHTSDYKEALM-LFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350
             +  RDV++WN M+ GY +   Y  A+  L        + PN  T +S+LP  A  GAL
Sbjct: 159 AKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGAL 218

Query: 351 DLGKWIHAYIDKN--HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI 408
             G  IHAY  +    Q    V + T+L+DMYAKC  +  A +VF GM  +   +W+A+I
Sbjct: 219 FQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALI 278

Query: 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVG-VLSACNHAGLLDIGRQYFNAMIQDYK 467
            G  +  +  +A +LF  M+ EGL     T V   L  C     L +G Q  +A+I    
Sbjct: 279 GGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQ-LHALIAKSG 337

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
           I   L     ++ +  +AGL +EA      + +K D   + +LL  C  +G+ E    V 
Sbjct: 338 IHADLTASNSLLSMYAKAGLINEATMFFDEIAVK-DTISYGALLSGCVQNGKAEEAFLVF 396

Query: 528 KHL--LELEPE 536
           K +    +EP+
Sbjct: 397 KKMQACNMEPD 407



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 73/176 (41%), Gaps = 8/176 (4%)

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
           W   ++ +   G +  A QVFD +      ++NA+I   +  G    A+ L+  M+   +
Sbjct: 37  WQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRV 96

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
            P+  TF  VL AC+    L  GR   +A      +   L     ++DL  R   F  A 
Sbjct: 97  APNKYTFPFVLKACSALVDLRAGRT-IHAHAAAAGLHTDLFVSTALIDLYIRCARFGPAR 155

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE---NPGAYVLLS 545
            +   M M+ D   W ++L     HG   +      HLL+++      P A  L+S
Sbjct: 156 NVFAKMPMR-DVVAWNAMLAGYANHG---MYHHAIAHLLDMQDHGGLRPNASTLVS 207


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 244/573 (42%), Positives = 356/573 (62%), Gaps = 8/573 (1%)

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ--NGELESARLVFNKSSLR 194
           +K C ++  +   K I AH+++  L  D F+ + LI   A   +G +  A  +F+ +   
Sbjct: 14  IKRCTRVGDL---KAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHP 70

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
           +   +  +I GY+       A  L+ +M +      PN  T   VL AC  +  L  G  
Sbjct: 71  NLFMWNTIIRGYSISDSPITAIALYRDMFLC--GISPNSYTFGFVLKACCKLLRLCEGQE 128

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           + S I   GL     + N LI +Y+ CG +  A  +F+ + + D  SW+ M+ GY     
Sbjct: 129 LHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQ 188

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
             EAL LFR+M   N+  +  T  SV+  C  LGALDLGKW+H+Y+DK   K++ V L T
Sbjct: 189 AVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKID-VVLGT 247

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
           +L+ MY+KCG++  A +VF GM  + + +W+ MI+G A+HG  +KAL LF  M      P
Sbjct: 248 ALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIP 307

Query: 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494
           + +TF  VLSAC+H+GL++ G Q F  M  +YKI+P+++HYGCMVDL  RAG+   A   
Sbjct: 308 NCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKF 367

Query: 495 LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554
           ++TM ++P+  +W +LLGAC+ HG  +LGE +++ +L+L+P +P  YVL+SN+YA  GRW
Sbjct: 368 IQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLVSNVYASLGRW 427

Query: 555 DDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKS 614
             V  +R+ + DK  KK  G SSIE+  +VH+F++GD+ HP+ + IY ML ++   L++ 
Sbjct: 428 SSVCQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPEREKIYGMLHQMARKLKQV 487

Query: 615 GFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSAT 674
           G V  T +VL+D+DEE KE AL  HSE+LAIAYGL+ T  G+ IRIVKNLRVC +CH   
Sbjct: 488 GHVNSTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRVCRDCHEVI 547

Query: 675 KLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           KLIS+++NREII RDR RFHHF++  CSCNDYW
Sbjct: 548 KLISEVYNREIIVRDRVRFHHFRERGCSCNDYW 580



 Score =  253 bits (646), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 132/395 (33%), Positives = 226/395 (57%), Gaps = 4/395 (1%)

Query: 26  KLLQNQPSL-ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYAL 84
           K + +Q SL A + +CT + ++K + + +++  L    F  SKLIE  AV+  G ++YA 
Sbjct: 2   KPMLDQGSLVAAIKRCTRVGDLKAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAH 61

Query: 85  LVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS 144
            +F     PN  +WN IIRG+S+S SP+ AI  Y  M L G  PN+YTF F+LK+C K+ 
Sbjct: 62  RIFSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLL 121

Query: 145 AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
            + EG+++H+ ++K+GL+ +  +   LI +YA  G ++ A ++F++    D+ S++ +++
Sbjct: 122 RLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVS 181

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
           GYA  G   +A +LF EM  + EN   +  T+ +V+  C  +G+L+LG WV S ++  G+
Sbjct: 182 GYAQNGQAVEALKLFREM--QAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGV 239

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
             ++ +  AL+ MYSKCG L  A  +F+ + +RDV +W+ MI GY      ++AL LF  
Sbjct: 240 KIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDA 299

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           M +S   PN VTF SVL AC++ G ++ G  I   +   ++    +  +  ++D++ + G
Sbjct: 300 MKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAG 359

Query: 385 NIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKAD 418
            +  A +    M  +  +  W  ++     HG  D
Sbjct: 360 MVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKD 394


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 250/572 (43%), Positives = 358/572 (62%), Gaps = 10/572 (1%)

Query: 143 ISAISEGKQIHAHVLKLGLE-SDPFVHTSLINMYAQ---NGELESARLVFNK-SSLRDAV 197
           +S+I++ +QIHA  ++ G+  SD  +   LI           +  A  VF+K     +  
Sbjct: 27  VSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVF 86

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFV-PNESTVVTVLSACAHMGSLELGNWVC 256
            +  LI GYA  G    A  L+ EM  R    V P+  T   ++ A   M  + LG  + 
Sbjct: 87  IWNTLIRGYAEIGNSISAFSLYREM--RVSGLVEPDTHTYPFLIKAVTTMADVRLGETIH 144

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
           S++   G GS ++V N+L+ +Y+ CGD+  A  +F+ + ++D+++WN +I G+      +
Sbjct: 145 SVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPE 204

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           EAL L+ +M    I+P+  T +S+L ACA +GAL LGK +H Y+ K      N+     L
Sbjct: 205 EALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLT-RNLHSSNVL 263

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG-EGLQPD 435
           +D+YA+CG ++ A+ +FD M  K   SW ++I GLA++G   +A+ LF  M   EGL P 
Sbjct: 264 LDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPC 323

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
           +ITFVG+L AC+H G++  G +YF  M ++YKI P+++H+GCMVDLL RAG   +A   +
Sbjct: 324 EITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYI 383

Query: 496 KTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555
           K+M M+P+  IW +LLGAC VHG  +L E     +L+LEP + G YVLLSNMYA   RW 
Sbjct: 384 KSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWS 443

Query: 556 DVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSG 615
           DV  IR ++   G+KKVPG S +EVG+ VHEFL+GDK HPQS  IY  L E+   L   G
Sbjct: 444 DVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEG 503

Query: 616 FVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATK 675
           +VP  S V  D++EE KE A+ +HSEK+AIA+ LIST   + I +VKNLRVC +CH A K
Sbjct: 504 YVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIK 563

Query: 676 LISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           L+SK++NREI+ RDR+RFHHFK+G+CSC DYW
Sbjct: 564 LVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 125/420 (29%), Positives = 231/420 (55%), Gaps = 25/420 (5%)

Query: 34  LALLSKCTNM---------QNIKQVHSQIIKTGLHNTQFALSK-----LIEICAVSPFGD 79
           L ++ KC N+           ++Q+H+  I+ G+  +   L K     L+ + +  P   
Sbjct: 12  LPMVEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPP--- 68

Query: 80  LSYALLVFETIREP-NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV-PNTYTFPFIL 137
           +SYA  VF  I +P N  IWN +IRG++   + + A   Y  M +SG V P+T+T+PF++
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
           K+   ++ +  G+ IH+ V++ G  S  +V  SL+++YA  G++ SA  VF+K   +D V
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           ++ ++I G+A  G  ++A  L+ EM    +   P+  T+V++LSACA +G+L LG  V  
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEM--NSKGIKPDGFTIVSLLSACAKIGALTLGKRVHV 246

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
            +   GL  NLH +N L+D+Y++CG + +A+ LF+ +  ++ +SW  +I G       KE
Sbjct: 247 YMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKE 306

Query: 318 ALMLFRQMLQSN-IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           A+ LF+ M  +  + P ++TF+ +L AC++ G +  G      + + ++    +  +  +
Sbjct: 307 AIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCM 366

Query: 377 IDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           +D+ A+ G +K A +    M  +  +  W  ++    +HG +D  L+ F+R+    L+P+
Sbjct: 367 VDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSD--LAEFARIQILQLEPN 424


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 276/785 (35%), Positives = 422/785 (53%), Gaps = 122/785 (15%)

Query: 37  LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN-- 94
           L++ ++    + VH+ I+ +G       +++LI+    S   ++ YA  +F+ I +P+  
Sbjct: 6   LAQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKS--FNIPYARYLFDKIPKPDIV 63

Query: 95  -------------------------------QVIWNNIIRGHSLSSSPVVAIKFYVRMIL 123
                                           V +N +I   S S     A++ +V+M  
Sbjct: 64  AATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKR 123

Query: 124 SGFVPNTYTFPFILKSCAKIS-AISEGKQIHAHVLKLG-----------------LESDP 165
            GFVP+ +TF  +L + + I+   +  +Q+H  V K G                   S P
Sbjct: 124 LGFVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSP 183

Query: 166 FVH-------------------------TSLINMYAQNGELESARLVFNKSSLRDAVSYT 200
            V+                         T++I  Y +N +L +AR +    +   AV++ 
Sbjct: 184 LVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWN 243

Query: 201 ALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI- 259
           A+I+GY  RG+ ++A  L   M         +E T  +V+SA ++ G   +G  V + + 
Sbjct: 244 AMISGYVHRGFYEEAFDLLRRM--HSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVL 301

Query: 260 ------EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN---------- 303
                  GH +   L V NALI +Y++CG LV+AR +F+ +  +D++SWN          
Sbjct: 302 RTVVQPSGHFV---LSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNAR 358

Query: 304 ---------------------VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
                                VMI G       +E L LF QM    +EP D  +   + 
Sbjct: 359 RIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIA 418

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           +C+ LG+LD G+ +H+ I +     +++S+  +LI MY++CG ++AA+ VF  M Y    
Sbjct: 419 SCSVLGSLDNGQQLHSQIIQLGHD-SSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSV 477

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           SWNAMI+ LA HG   +A+ L+ +M+ E + PD ITF+ +LSAC+HAGL+  GR YF+ M
Sbjct: 478 SWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTM 537

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
              Y I+P+  HY  ++DLL RAG+F EA+ + ++M  +P A IW +LL  C +HG +EL
Sbjct: 538 RVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMEL 597

Query: 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582
           G   A  LLEL P+  G Y+ LSNMYA  G+WD+VA +R  + ++G+KK PGCS IEV +
Sbjct: 598 GIQAADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVEN 657

Query: 583 VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEK 642
           +VH FLV D VHP+   +Y  L+++   + K G+VPDT  VL+DM+ E KE ALS HSEK
Sbjct: 658 MVHVFLVDDAVHPEVHAVYRYLEQLVHEMRKLGYVPDTKFVLHDMESEQKEYALSTHSEK 717

Query: 643 LAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCS 702
           LA+ YG++    G TIR+ KNLR+CG+CH+A K ISK+ +REII RDR RFHHF++G CS
Sbjct: 718 LAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKVVDREIIVRDRKRFHHFRNGECS 777

Query: 703 CNDYW 707
           C++YW
Sbjct: 778 CSNYW 782


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 264/693 (38%), Positives = 402/693 (58%), Gaps = 18/693 (2%)

Query: 25  YKLLQNQPS----LALLSKCTNMQNI---KQVHSQIIKT-GLHNTQFALSKLIEICAVSP 76
           YK +  QP+      +L  C +++ +   K +HS+I  T GL       + L+ + A   
Sbjct: 112 YKRMDLQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYA--K 169

Query: 77  FGDLSYALLVFETIREPNQVI-WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPF 135
            G L  A  +FE +     V  WN +I  ++ S     AI+ Y  M +    P+  TF  
Sbjct: 170 CGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVE---PSVRTFTS 226

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           +L +C+ +  + +G++IHA +   G E D  +  +L+ MYA+   L+ A  +F +   RD
Sbjct: 227 VLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRD 286

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
            VS++A+I  +A     D+A + + +M +  E   PN  T  +VL ACA +G L  G  V
Sbjct: 287 VVSWSAMIAAFAETDLFDEAIEFYSKMQL--EGVRPNYYTFASVLLACASVGDLRAGRAV 344

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
              I G+G    L    AL+D+Y+  G L +AR LF+ IE RD   W V+IGGY+     
Sbjct: 345 HDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHR 404

Query: 316 KEALMLFRQMLQSNIEP-NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
              L L+R+M  +   P   + +  V+ ACA LGA    +  H+ I+ +   +++  L T
Sbjct: 405 TGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGM-ISDFVLAT 463

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
           SL++MY++ GN+++A QVFD M  +   +W  +I+G A HG+   AL L+  M  EG +P
Sbjct: 464 SLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEP 523

Query: 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494
            ++TF+ VL AC+HAGL + G+Q F ++  DY + P + HY C++DLL RAG   +AE L
Sbjct: 524 SELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEEL 583

Query: 495 LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554
           +  M ++P+   W+SLLGA R+H  ++     A  + +L+P +P +YVLLSN++A  G  
Sbjct: 584 INAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNL 643

Query: 555 DDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKS 614
             +A++R  +  +G+KK  G S IEV   +HEF VGD  HP+ + I+  L  +   ++++
Sbjct: 644 AGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKEA 703

Query: 615 GFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSAT 674
           G+VP++ EVL+D+ E+ KE  L  HSEKLAIA+GLI+T PGTT+RI   LR+C +CHSA 
Sbjct: 704 GYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRICHDCHSAV 763

Query: 675 KLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           K IS I  REII RD +RFH F+DG CSC DYW
Sbjct: 764 KFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 796



 Score =  208 bits (530), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 130/385 (33%), Positives = 211/385 (54%), Gaps = 19/385 (4%)

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L+ C  + ++   +QIH  +      ++ F+   ++  Y + G + SAR+ F+  + ++ 
Sbjct: 34  LRQCQDLESV---RQIHDRI-SGAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKND 89

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
            S+ +++T YA  G+   A  L+  M ++     PN     TVL ACA + +LE G  + 
Sbjct: 90  YSWGSMLTAYAQNGHYRAALDLYKRMDLQ-----PNPVVYTTVLGACASIEALEEGKAIH 144

Query: 257 SLIEG-HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSD 314
           S I G  GL  ++ + N+L+ MY+KCG L  A+ LFE +  +R V SWN MI  Y  +  
Sbjct: 145 SRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGH 204

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
           ++EA+ L+  M   ++EP+  TF SVL AC+ LG LD G+ IHA I     +L ++SL  
Sbjct: 205 FEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTEL-DLSLQN 260

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
           +L+ MYA+C  +  A ++F  +  + + SW+AMI+  A     D+A+  +S+M  EG++P
Sbjct: 261 ALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRP 320

Query: 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQD-YKISPKLQHYGCMVDLLGRAGLFDEAEA 493
           +  TF  VL AC   G L  GR   + ++ + YKI+  L +   +VDL    G  DEA +
Sbjct: 321 NYYTFASVLLACASVGDLRAGRAVHDQILGNGYKIT--LVNGTALVDLYTSYGSLDEARS 378

Query: 494 LLKTMEMKPDAAIWTSLLGACRVHG 518
           L   +E + D  +WT L+G     G
Sbjct: 379 LFDQIENR-DEGLWTVLIGGYSKQG 402



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 96/300 (32%), Positives = 156/300 (52%), Gaps = 40/300 (13%)

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
           +N+ + N ++  Y KCG +  AR  F++I +++  SW  M+  Y     Y+ AL L+++M
Sbjct: 56  ANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM 115

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
              +++PN V + +VL ACA + AL+ GK IH+ I        +V L  SL+ MYAKCG+
Sbjct: 116 ---DLQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGS 172

Query: 386 IKAAEQVFDGM-GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
           ++ A+++F+ M G ++++SWNAMI+  A  G  ++A+ L+  M    ++P   TF  VLS
Sbjct: 173 LEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLS 229

Query: 445 ACNHAGLLDIGRQYF---------------NAMIQDY----------KISPKLQH----- 474
           AC++ GLLD GR+                 NA++  Y          KI  +L       
Sbjct: 230 ACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVS 289

Query: 475 YGCMVDLLGRAGLFDEAEALLKTMEM---KPDAAIWTSLLGACRVHGRLELGESVAKHLL 531
           +  M+       LFDEA      M++   +P+   + S+L AC   G L  G +V   +L
Sbjct: 290 WSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQIL 349


>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
 gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 240/569 (42%), Positives = 362/569 (63%), Gaps = 6/569 (1%)

Query: 142 KISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN--GELESARLVFNKSSLRDAVSY 199
           K  ++ E KQ+H  +LK GL  D F  +S++   A +    ++ A  +F +        +
Sbjct: 41  KCKSLEEFKQVHVQILKFGLFLDSFCSSSVLATCALSDWNSMDYACSIFQQLDEPTTFDF 100

Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
             +I GY +    ++A  L+++M  RE    P+  T   VL ACA +  ++ G  +   +
Sbjct: 101 NTMIRGYVNNMNFENAIYLYNDMLQREVE--PDNFTYPVVLKACARLAVIQEGMQIHGHV 158

Query: 260 EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEAL 319
              GL  +++V N+LI+MY KC D+  +  +F  +E++ V SW+ +I  +   + + E L
Sbjct: 159 FKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAHASLAMWWECL 218

Query: 320 MLFRQMLQSNI-EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
            LF  M +       +   ++VL AC +LGA  LG+  H  + KN  +LN V++ TSL+D
Sbjct: 219 ALFEDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSLLKNITELN-VAVMTSLMD 277

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
           MY KCG+++    +F  M  K   S++ +ISGL +HG   +AL +FS M+ EGL+PDD+T
Sbjct: 278 MYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGLGLHGYGRQALQIFSEMVEEGLEPDDVT 337

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
           +V VLSAC+H+GL+D G   F+ M  +Y+I P +QHYGCMVDL GRAGL +EA  L+++M
Sbjct: 338 YVSVLSACSHSGLVDEGLDLFDKMKFEYRIEPTMQHYGCMVDLKGRAGLLEEAFQLVQSM 397

Query: 499 EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVA 558
            +K +  +W SLL AC+VH  L+LGE  A++L  L   NP  Y++LSNMYA A +W++ A
Sbjct: 398 PIKANDVLWRSLLSACKVHDNLKLGEIAAENLFRLSSHNPSDYLVLSNMYARAQQWENAA 457

Query: 559 TIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVP 618
            IRT++ ++G+ + PG S +EV S V++F+  DK + +S +IY+M+ +++  L   G++P
Sbjct: 458 KIRTKMINRGLIQTPGYSLVEVKSKVYKFVSQDKSYCKSGNIYKMIHQMEWQLRFEGYMP 517

Query: 619 DTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLIS 678
           DTS+V+ D+DEE K   L  HS+KLAIA+ LI T  G+ IRI++NLR+C +CHS TKL+S
Sbjct: 518 DTSQVMLDVDEEEKGERLKGHSQKLAIAFALIHTSQGSAIRIIRNLRMCNDCHSYTKLVS 577

Query: 679 KIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            I+ REI  RDRNRFHHFKDGNCSC DYW
Sbjct: 578 MIYEREITVRDRNRFHHFKDGNCSCRDYW 606



 Score =  235 bits (600), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 132/406 (32%), Positives = 224/406 (55%), Gaps = 8/406 (1%)

Query: 16  HFPPSSDPPYK------LLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLI 69
           H  PS D P          + Q  L L+ KC +++  KQVH QI+K GL    F  S ++
Sbjct: 12  HLLPSKDLPQSSSELNLKQKEQEYLCLVKKCKSLEEFKQVHVQILKFGLFLDSFCSSSVL 71

Query: 70  EICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPN 129
             CA+S +  + YA  +F+ + EP    +N +IRG+  + +   AI  Y  M+     P+
Sbjct: 72  ATCALSDWNSMDYACSIFQQLDEPTTFDFNTMIRGYVNNMNFENAIYLYNDMLQREVEPD 131

Query: 130 TYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN 189
            +T+P +LK+CA+++ I EG QIH HV KLGLE D +V  SLINMY +  ++E +  +F 
Sbjct: 132 NFTYPVVLKACARLAVIQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFR 191

Query: 190 KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL 249
           +   +   S++A+I  +AS     +   LF++M  RE  +   ES +V VLSAC H+G+ 
Sbjct: 192 RMEQKSVASWSAIIAAHASLAMWWECLALFEDMS-REGCWRAEESILVNVLSACTHLGAF 250

Query: 250 ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309
            LG      +  +    N+ V  +L+DMY KCG L K   LF+++ +++ +S++V+I G 
Sbjct: 251 HLGRCAHGSLLKNITELNVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGL 310

Query: 310 THTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNN 369
                 ++AL +F +M++  +EP+DVT++SVL AC++ G +D G  +   +   ++    
Sbjct: 311 GLHGYGRQALQIFSEMVEEGLEPDDVTYVSVLSACSHSGLVDEGLDLFDKMKFEYRIEPT 370

Query: 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL-ASWNAMISGLAMH 414
           +  +  ++D+  + G ++ A Q+   M  K     W +++S   +H
Sbjct: 371 MQHYGCMVDLKGRAGLLEEAFQLVQSMPIKANDVLWRSLLSACKVH 416


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 221/481 (45%), Positives = 325/481 (67%), Gaps = 4/481 (0%)

Query: 230 VPNESTVVTVLSACAHM-GSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD--LVK 286
           VPN+ T   +L ACA + GS ++G    +     G  ++ +V+N LI MYS  G   L  
Sbjct: 123 VPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGD 182

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           AR++F+ + K   ++W+ MIGGY       +A+ LFR+M  + ++ ++VT + VL A   
Sbjct: 183 ARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQADEVTVIGVLAAATD 242

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
           LGAL+L +W+  ++++      +V+L  +LID  AKCG++  A  VF+GM  +++ SW +
Sbjct: 243 LGALELARWVRRFVEREGIG-KSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTS 301

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
           +I  LAM G+  +A+ +F  M   G+ PDD+ F+GVL+AC+HAG++D G  YF+AM  +Y
Sbjct: 302 VIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEY 361

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
            I PK++HYGCMVD+ GRAG+ + A   ++TM ++P+  IW SL+ ACR HGRLELGES+
Sbjct: 362 GIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESI 421

Query: 527 AKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHE 586
            + LL   P +   Y++LSN++A   RW + + IR  ++ +G+KKVPGCS +E+   VHE
Sbjct: 422 TRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHE 481

Query: 587 FLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIA 646
           F+ GD+ HPQ K IY M++E+   L + G +  TSEVL D+DEE KEGAL  HSEKLAIA
Sbjct: 482 FIAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEEDKEGALQWHSEKLAIA 541

Query: 647 YGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDY 706
           + L+ T PGT +R+VKNLRVC +CH+A K IS+++ REI+ RDR+RFH FKDG+CSC D+
Sbjct: 542 FALLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDF 601

Query: 707 W 707
           W
Sbjct: 602 W 602



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 132/438 (30%), Positives = 223/438 (50%), Gaps = 20/438 (4%)

Query: 3   LPPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQ 62
           +PP  L  SPS     PS+         Q  L LL+  +   ++ Q  + ++K+GLH   
Sbjct: 1   MPP--LVSSPSAPRLSPSA----ARAAEQHCLRLLAASSTPTSLLQSVAFLLKSGLHANS 54

Query: 63  FALSKLIEICAVSPFGDLSYALLVFETIREP-NQVIWNNIIRGHSLSSSPVVAIK----- 116
             L++L    A +    L   +        P +  + N +IR H+  +SP+ +++     
Sbjct: 55  LVLTRLFAASASAAPALLDPLVAALLRPSVPLDAFLANTLIRAHA--TSPIHSLRLRAAA 112

Query: 117 FYVRMILSGFVPNTYTFPFILKSCAKISAISE-GKQIHAHVLKLGLESDPFVHTSLINMY 175
           F+  M+    VPN +TFPF+LK+CA +    + G Q HA  LK G  +D +V  +LI+MY
Sbjct: 113 FFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMY 172

Query: 176 A--QNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
           +    G L  AR VF++     AV+++A+I GY   G   DA +LF EM  +      +E
Sbjct: 173 SCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREM--QANGVQADE 230

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
            TV+ VL+A   +G+LEL  WV   +E  G+G ++ + NALID  +KCGD+  A  +FE 
Sbjct: 231 VTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEG 290

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
           +++R V+SW  +I         KEA+ +F +M  + + P+DV F+ VL AC++ G +D G
Sbjct: 291 MQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEG 350

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLA 412
                 +   +     +  +  ++DM+ + G ++ A +    M  +     W +++S   
Sbjct: 351 CGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACR 410

Query: 413 MHGKADKALSLFSRMIGE 430
            HG+ +   S+   ++ E
Sbjct: 411 AHGRLELGESITRSLLHE 428


>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 259/590 (43%), Positives = 358/590 (60%), Gaps = 31/590 (5%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDP---FVHTSLINMYAQNGELESARLVFNKSS 192
           IL      S +S+ KQ+HA  L+     +P   F++  ++ + +   ++  A  VF+   
Sbjct: 32  ILSLAETCSDMSQLKQLHAFTLRTTYPDEPATLFLYGKILQLSSSFSDVNYAFRVFDSIE 91

Query: 193 LRDAVSYTALITGYA---SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL 249
              +  +  LI   A   SR   ++A  L+ +M  R E+  P++ T   VL ACA++  L
Sbjct: 92  NHSSFMWNTLIRACAHDVSRK--EEAFMLYRKMLERGES-APDKHTFPFVLKACAYIFGL 148

Query: 250 ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309
             G  V   I  HG   +++V N LI  Y  CG L  AR +F+ + +R ++SWN MI   
Sbjct: 149 SEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMIDAL 208

Query: 310 THTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK--L 367
               +Y  AL LFR M Q + EP+  T  SVL ACA LG+L LG W H ++ +N      
Sbjct: 209 VRVGEYDSALQLFRDM-QKSFEPDGYTMQSVLSACAGLGSLSLGTWSHVFLLRNCDVDVA 267

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
            +V +  SLI+MY KCG+++ AEQVF GM    LASWNAMI G A HGKA++A++ F  M
Sbjct: 268 MDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLASWNAMILGFATHGKAEEAMNCFDCM 327

Query: 428 IGEG--LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485
           + EG  ++P+ +TFV +L ACNH G+++ GRQYF+ M+++Y I P L+HYGC++DLL RA
Sbjct: 328 VKEGKNVKPNSVTFVALLIACNHRGMVNKGRQYFDMMVREYGIEPALEHYGCIIDLLARA 387

Query: 486 GLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG-RLELGESVAKHLLELEPEN------- 537
           G   EA  ++ +M MKPDA IW SLL AC   G  +EL E +A++++    +N       
Sbjct: 388 GYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTMEDNQSSNSNC 447

Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQS 597
            GAYVLLS +YA A RW+DV  +R  ++D G++K PGCSSIE+  + +EF  GD  HPQ+
Sbjct: 448 SGAYVLLSRVYASANRWNDVGIVRKLMSDHGIRKEPGCSSIEINGISNEFFAGDTSHPQT 507

Query: 598 KHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTT 657
           K IY+ L  ID  L           ++   ++  KE +L  HSE+LAIA+GLIS  P T 
Sbjct: 508 KQIYQQLKVIDDRLRS---------IVDATNDSSKEYSLRLHSERLAIAFGLISLPPQTP 558

Query: 658 IRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           IRI KNLRVC +CH  TKLISK+FN EII RDR RFHHFKDG+CSC DYW
Sbjct: 559 IRIFKNLRVCSDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 608



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/425 (32%), Positives = 226/425 (53%), Gaps = 20/425 (4%)

Query: 7   SLTLSPSILHFPPSSDPPYKLLQNQPS--LALLSKCTNMQNIKQVHSQIIKTGLHN---T 61
           SL L P   H  P++ P      N     L+L   C++M  +KQ+H+  ++T   +   T
Sbjct: 4   SLLLHPLSPHIQPANSPSASTAGNHHRRILSLAETCSDMSQLKQLHAFTLRTTYPDEPAT 63

Query: 62  QFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRG--HSLSSSPVVAIKFYV 119
            F   K++++   S F D++YA  VF++I   +  +WN +IR   H +S     A   Y 
Sbjct: 64  LFLYGKILQL--SSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEE-AFMLYR 120

Query: 120 RMILSG-FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN 178
           +M+  G   P+ +TFPF+LK+CA I  +SEGKQ+H  ++K G   D +V+  LI+ Y   
Sbjct: 121 KMLERGESAPDKHTFPFVLKACAYIFGLSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSC 180

Query: 179 GELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVT 238
           G L+ AR VF++   R  VS+ ++I      G  D A QLF +M   +++F P+  T+ +
Sbjct: 181 GCLDLARKVFDEMPERSLVSWNSMIDALVRVGEYDSALQLFRDM---QKSFEPDGYTMQS 237

Query: 239 VLSACAHMGSLELGNWVCSLIEGH---GLGSNLHVTNALIDMYSKCGDLVKARDLFESIE 295
           VLSACA +GSL LG W    +  +    +  ++ + N+LI+MY KCG L  A  +F+ + 
Sbjct: 238 VLSACAGLGSLSLGTWSHVFLLRNCDVDVAMDVLIKNSLIEMYCKCGSLRMAEQVFQGMR 297

Query: 296 KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS--NIEPNDVTFLSVLPACAYLGALDLG 353
           K D+ SWN MI G+      +EA+  F  M++   N++PN VTF+++L AC + G ++ G
Sbjct: 298 KHDLASWNAMILGFATHGKAEEAMNCFDCMVKEGKNVKPNSVTFVALLIACNHRGMVNKG 357

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLA 412
           +     + + +     +  +  +ID+ A+ G I  A  +   M  K  A  W +++    
Sbjct: 358 RQYFDMMVREYGIEPALEHYGCIIDLLARAGYITEAIDMVMSMPMKPDAVIWRSLLDACC 417

Query: 413 MHGKA 417
             G +
Sbjct: 418 KKGAS 422


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 251/585 (42%), Positives = 372/585 (63%), Gaps = 22/585 (3%)

Query: 137 LKSCAKISAISEGKQIHAHVLKLG--LESDPFVHTSLINMYAQNG-----ELESARLVFN 189
           L  C  + A++   Q+HA  +K G  L++ P   T L+ +  + G      L  AR VF+
Sbjct: 35  LPHCTSLRALA---QLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFD 91

Query: 190 K-SSLRDAVSYTALITGYASRGYL----DDARQLFDEMPIREENFVPNESTVVTVLSACA 244
           +     D V Y  L+ GYA  G+     ++A ++F  M   EE   P+  T V++L ACA
Sbjct: 92  RIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRM--MEEGVAPDTYTFVSLLKACA 149

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
              + E G     +    G   + +V   LI+MY++CGD+  AR +F+ ++   V+S+N 
Sbjct: 150 SARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNA 209

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           MI     +S   EAL+LFR+M    ++P  VT +SVL ACA LGAL+LG+WIH YI K  
Sbjct: 210 MITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRK-- 267

Query: 365 QKLNN-VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSL 423
            +L++ V + T+LIDMYAKCG+++ A  VF  M  +   +W+ M+   A HG   +A+S+
Sbjct: 268 MRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISM 327

Query: 424 FSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLG 483
           F  M  +G++PDD+TF+GVL AC+H+G++  G QYF++M ++Y I   ++HYGC+ DLL 
Sbjct: 328 FEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM-REYGIVSGIKHYGCVTDLLA 386

Query: 484 RAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVL 543
           R+G  + A   +  + +KP A +W +LL AC  HG +++G+ V + +LEL+  + G YV+
Sbjct: 387 RSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVI 446

Query: 544 LSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEM 603
            SN+ A  GRW+++  +R  +++KG+ KVPGCSSIE+ ++VHEF  GD  HP S+    M
Sbjct: 447 FSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRM 506

Query: 604 LDEIDALLEKSGFVPDTSEVLY-DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVK 662
           +DE+   L+  G+VP+TS V + +M EE K  +L +HSEKLAI++GL++T PGTT+RIVK
Sbjct: 507 VDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVK 566

Query: 663 NLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           NLRVC +CHS  KL+S +FNR II RD NRFHHF+DG CSC DYW
Sbjct: 567 NLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 149/440 (33%), Positives = 239/440 (54%), Gaps = 20/440 (4%)

Query: 3   LPPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTG--LHN 60
           +  S LT +PS L    S +PP     + P LA L  CT+++ + Q+H+  +K G  L  
Sbjct: 1   MSSSPLTATPSPLLPAKSKNPPPHHHHHNPLLAYLPHCTSLRALAQLHAVAVKAGGGLQA 60

Query: 61  TQFALSKLIEIC----AVSPFGDLSYALLVFETIREPNQVIW-NNIIRGHSLSSSPVV-- 113
               +++L+ +C    A +P   L+YA  VF+ I  P  V+W N ++RG++         
Sbjct: 61  HPAFVTRLLTLCTEQGAEAP-AHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGWGGGCA 119

Query: 114 --AIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSL 171
             A + +VRM+  G  P+TYTF  +LK+CA   A  EG+Q H   +K G     +V  +L
Sbjct: 120 EEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTL 179

Query: 172 INMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVP 231
           INMYA+ G++ +AR++F++      VSY A+IT         +A  LF EM  + +   P
Sbjct: 180 INMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREM--QAKGLKP 237

Query: 232 NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLF 291
              T+++VLSACA +G+LELG W+   I    L S + V  ALIDMY+KCG L  A  +F
Sbjct: 238 TSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVF 297

Query: 292 ESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALD 351
           + +E RD  +W+VM+  Y +    +EA+ +F +M +  ++P+DVTFL VL AC++ G + 
Sbjct: 298 QDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVS 357

Query: 352 LGKWIHAYID--KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMI 408
            G     Y D  + +  ++ +  +  + D+ A+ G ++ A +  D +  K  A  W  ++
Sbjct: 358 EGL---QYFDSMREYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLL 414

Query: 409 SGLAMHGKADKALSLFSRMI 428
           S  A HG  D    +F R++
Sbjct: 415 SACAGHGDVDMGKRVFERIL 434



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 145/298 (48%), Gaps = 8/298 (2%)

Query: 34  LALLSKCTNM---QNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           ++LL  C +    +  +Q H   +K G    ++    LI + A    GD+  A ++F+ +
Sbjct: 142 VSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYA--ECGDVRAARVMFDRM 199

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
                V +N +I     SS P  A+  +  M   G  P + T   +L +CA + A+  G+
Sbjct: 200 DGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGR 259

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            IH ++ K+ L+S   V+T+LI+MYA+ G LE A  VF     RD  +++ ++  YA+ G
Sbjct: 260 WIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHG 319

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
           Y  +A  +F+EM  +++   P++ T + VL AC+H G +  G      +  +G+ S +  
Sbjct: 320 YGREAISMFEEM--KKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKH 377

Query: 271 TNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
              + D+ ++ G L +A    + +  K   I W  ++       D      +F ++L+
Sbjct: 378 YGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILE 435


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 266/667 (39%), Positives = 401/667 (60%), Gaps = 30/667 (4%)

Query: 54  IKTGLHNTQFALS-KLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPV 112
           IKTG   T  ++   LI++ A +  GDL  A  VF  + E   V+W  +I  +       
Sbjct: 174 IKTGFWGTDVSVGCALIDMFARN--GDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAG 231

Query: 113 VAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLI 172
            A++ ++ M+  GF P+ YT   ++ +CA+  +   G+Q+H+ VL+LGL SD  V   L+
Sbjct: 232 KAVELFLGMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLV 291

Query: 173 NMYAQ---NGELESARLVFNKSSLRDAVSYTALITGYAS-RGYLDDARQLFDEMPIREEN 228
           +MY +      +E AR VF +    + +S+TALI+GY    G  ++A +L  EM    E+
Sbjct: 292 DMYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEML--NES 349

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288
             PN  T  ++L ACA++   + G  + + +    +G+   V NAL+ MY++ G + +AR
Sbjct: 350 IEPNHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEAR 409

Query: 289 DLFESIEKRDVISWNVMIG--GYTHTSDYKEALMLFRQMLQSNIEPNDV-----TFLSVL 341
             F+ + +R+++S +  IG  G ++ S              S IE  DV     TF S+L
Sbjct: 410 KAFDQLYERNLLSTSSDIGETGRSNAS------------WSSQIESMDVGVSTFTFASLL 457

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM-GYKT 400
            A A +G    G+ +HA   K   + ++  +  SL+ MY++CG +  A + FD M     
Sbjct: 458 SAAATVGLPTKGQQLHALSIKTGFE-SDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHN 516

Query: 401 LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFN 460
           + SW ++IS LA HG A++ALSLF  MI  G++P+D+T++ VLSAC+H GL+  G++YF 
Sbjct: 517 VISWTSIISALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEGKEYFR 576

Query: 461 AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRL 520
           +M +D+++ P+++HY CMVDLL R+GL  EA   +  M  K DA +W +LLGACR +  +
Sbjct: 577 SMQKDHRLIPRMEHYACMVDLLARSGLVQEALEFINEMPCKADALVWKTLLGACRTYENI 636

Query: 521 ELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEV 580
           E+GE  A+H+++LEP++P  YVLLSN+YA  G WD+VA IR+ +  + + K  G S + V
Sbjct: 637 EIGEIAARHVIDLEPQDPAPYVLLSNLYAHGGLWDEVARIRSLMRHRNLSKETGLSWMHV 696

Query: 581 GSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHS 640
           G+ +HEF  GD  HP+++ IY  L  +   ++  G+VPDTS VL+DM ++ KE  L  HS
Sbjct: 697 GNTIHEFRAGDTSHPRAQEIYAKLAVLIREIKDIGYVPDTSIVLHDMSDKLKEQCLLQHS 756

Query: 641 EKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGN 700
           EK+A+A+GLI+T P   IRI KNLRVC +CHSA K ISK   REII RD NRFH  KDG 
Sbjct: 757 EKIAVAFGLITTLPTKPIRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRMKDGK 816

Query: 701 CSCNDYW 707
           CSC +YW
Sbjct: 817 CSCGEYW 823



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 176/352 (50%), Gaps = 12/352 (3%)

Query: 149 GKQIHAHVLKLG-LESDPFVHTSLINMYAQNGELESARLVFNK-SSLRDAVSYTALITGY 206
           G+ +H  +L    L++D  V  SL+ MY++ G + +AR VF+    LRD VS+TA+    
Sbjct: 62  GRALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCL 121

Query: 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC--AHMGSLELGNWVCSLIEGHGL 264
              G   +A  L  EM   E    PN  T+     AC    +     G  +   I+    
Sbjct: 122 TRNGAEQEALVLLGEM--LESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFW 179

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
           G+++ V  ALIDM+++ GDLV AR +F  + +R V+ W +MI  Y       +A+ LF  
Sbjct: 180 GTDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLG 239

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC- 383
           ML+   EP+  T  S++ ACA  G+  LG+ +H+ + +    +++  +   L+DMY K  
Sbjct: 240 MLEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLR-LGLVSDTCVSCGLVDMYTKLQ 298

Query: 384 --GNIKAAEQVFDGMGYKTLASWNAMISG-LAMHGKADKALSLFSRMIGEGLQPDDITFV 440
              +++ A +VF  M    + SW A+ISG +   G+ + A+ L   M+ E ++P+ +T+ 
Sbjct: 299 MEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYS 358

Query: 441 GVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
            +L AC +    D GRQ  +A +    I         +V +   +G  +EA 
Sbjct: 359 SLLKACANLSDQDSGRQ-IHARVMKTSIGNVNVVGNALVSMYAESGCMEEAR 409



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 132/253 (52%), Gaps = 7/253 (2%)

Query: 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEK-RDVISWNVMIGGYTHTSDYKEALMLF 322
           L ++  V N+L+ MYSKCG +  AR +F+ +   RD++SW  M    T     +EAL+L 
Sbjct: 75  LDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQEALVLL 134

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGAL--DLGKWIHAYIDKNHQKLNNVSLWTSLIDMY 380
            +ML+S + PN  T  +   AC + G L    G  +  +  K      +VS+  +LIDM+
Sbjct: 135 GEMLESGLRPNAFTLCAAAHAC-FPGELFRSSGGTVLGFAIKTGFWGTDVSVGCALIDMF 193

Query: 381 AKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFV 440
           A+ G++ AA +VF+G+  +T+  W  MI+     G A KA+ LF  M+ +G +PD  T  
Sbjct: 194 ARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMS 253

Query: 441 GVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEM 500
            ++SAC   G   +G+Q  + +++   +S      G +VD+  +  +    E   K  + 
Sbjct: 254 SMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCG-LVDMYTKLQMEQSMECARKVFKR 312

Query: 501 KPDAAI--WTSLL 511
            P   +  WT+L+
Sbjct: 313 MPTHNVMSWTALI 325



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 159/310 (51%), Gaps = 25/310 (8%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           +LL  C N+ +    +Q+H++++KT + N     + L+ + A S  G +  A   F+ + 
Sbjct: 359 SLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAES--GCMEEARKAFDQLY 416

Query: 92  EPNQVIWNNII----RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAIS 147
           E N +  ++ I    R ++  SS + ++   V         +T+TF  +L + A +   +
Sbjct: 417 ERNLLSTSSDIGETGRSNASWSSQIESMDVGV---------STFTFASLLSAAATVGLPT 467

Query: 148 EGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK-SSLRDAVSYTALITGY 206
           +G+Q+HA  +K G ESD  +  SL++MY++ G L+ A   F++     + +S+T++I+  
Sbjct: 468 KGQQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISAL 527

Query: 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN-WVCSLIEGHGLG 265
           A  G+ + A  LF +M +      PN+ T + VLSAC+H+G ++ G  +  S+ + H L 
Sbjct: 528 AKHGHAERALSLFHDMIL--SGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHRLI 585

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
             +     ++D+ ++ G + +A +    +  K D + W  ++G      + +   +  R 
Sbjct: 586 PRMEHYACMVDLLARSGLVQEALEFINEMPCKADALVWKTLLGACRTYENIEIGEIAARH 645

Query: 325 MLQSNIEPND 334
           ++  ++EP D
Sbjct: 646 VI--DLEPQD 653


>gi|302753382|ref|XP_002960115.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
 gi|300171054|gb|EFJ37654.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
          Length = 653

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 258/656 (39%), Positives = 378/656 (57%), Gaps = 34/656 (5%)

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           A  VF+ I++ N   W+ ++  +  ++    A++ Y  M+      + YT   +L +C K
Sbjct: 1   ARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVREEISIDAYTLSSVLAACTK 60

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK-SSLRDAVSYTA 201
           +  + EG+ +     +LG E D  V TSLI+++A+ G LE A  VF    ++RD +S TA
Sbjct: 61  LLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTA 120

Query: 202 LITGYASRGYLDDARQLFDEMPIRE------------------ENF-----------VPN 232
           +I  Y   G L D++ LF  M +++                  + F            P+
Sbjct: 121 MIGAYC--GSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPD 178

Query: 233 ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFE 292
             T  ++L ACA    LE G  +   I   G   +  + N LI MY++CG L  AR  F 
Sbjct: 179 IYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRCGSLESARRYFY 238

Query: 293 SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL 352
           SIEK+++ +WN M+  Y      K+AL L++ ML     P+  TF SV+ +CA LGAL  
Sbjct: 239 SIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALRE 298

Query: 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLA 412
           GK+IH     +     +V L T+L++MYAKCG++  A++ FDG+  K + SW+AMI+  A
Sbjct: 299 GKFIHE-CSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASA 357

Query: 413 MHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL 472
            HG A++AL L   M  +G+  +++T   VL AC+H G L  G  YF  + QD+ I    
Sbjct: 358 QHGHAEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDE 417

Query: 473 QHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
           ++    +DLLGRAG   EAE +L TM  K       +LLG C+VHG +  G++  K ++ 
Sbjct: 418 ENTVGFIDLLGRAGWLKEAEHVLHTMPFKVSFVALVTLLGGCKVHGDVRRGKAFTKRIVA 477

Query: 533 LEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDK 592
           LEPENPG+YVLL+NMYA AGRWDDVA +R  +  KG+K+  GCSSIE    ++EF VGD 
Sbjct: 478 LEPENPGSYVLLNNMYAAAGRWDDVAKLRRYMRKKGVKRQTGCSSIEYRDKIYEFSVGDT 537

Query: 593 VHPQSKHIYEMLDEI-DALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLIS 651
            +P++  I   L+ +   + E+ G+VPDT +V +D+ ++ KE  L  HSEK+A+ +GLI+
Sbjct: 538 SNPRNLEIRAELERLYSRMKEEEGYVPDTRDVFHDVSDDKKEELLKFHSEKMAMGFGLIT 597

Query: 652 TKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           + PG+T+RI+KNLRVC +CH+  KL SKI  R II RD  RFHHF+ G CSC DYW
Sbjct: 598 SPPGSTLRIIKNLRVCSDCHTVGKLASKITGRRIIVRDGTRFHHFEGGICSCGDYW 653



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 109/404 (26%), Positives = 190/404 (47%), Gaps = 16/404 (3%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAV--SPFGDLSYALLVFETIREP 93
           L +KC  ++  + V           +  A+  +I + A+  +  G L  +  +F T+   
Sbjct: 92  LFAKCGCLEEAESVF---------RSMGAMRDIISVTAMIGAYCGSLKDSKSLFLTMDVK 142

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           + V WN +I  ++L      A   + RM   G  P+ YTF  IL +CA    + +G+ +H
Sbjct: 143 DVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLH 202

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
             +   G + D  +  +LI+MY + G LESAR  F     ++  ++  ++  YA      
Sbjct: 203 VRITARGFDRDFAMQNNLISMYTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGK 262

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           DA  L+  M +  E F P+  T  +V+ +CA +G+L  G ++       G   ++ +  A
Sbjct: 263 DALFLYKNMLL--EGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTA 320

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           L++MY+KCG L  A+  F+ I  +DV+SW+ MI         +EAL L   M    I  N
Sbjct: 321 LVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQN 380

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
           +VT  SVL AC++ G L  G      + ++     +       ID+  + G +K AE V 
Sbjct: 381 EVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVL 440

Query: 394 DGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
             M +K +  +   ++ G  +HG   +  +   R++   L+P++
Sbjct: 441 HTMPFKVSFVALVTLLGGCKVHGDVRRGKAFTKRIV--ALEPEN 482



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 169/366 (46%), Gaps = 24/366 (6%)

Query: 35  ALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ++L  C +   +++ + +H +I   G  +  FA+   + I   +  G L  A   F +I 
Sbjct: 184 SILGACASPKRLEDGRMLHVRITARGF-DRDFAMQNNL-ISMYTRCGSLESARRYFYSIE 241

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           +     WN ++  ++       A+  Y  M+L GF P+ +TF  ++ SCA + A+ EGK 
Sbjct: 242 KKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKF 301

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IH      G E D  + T+L+NMYA+ G L  A+  F+  S +D VS++A+I   A  G+
Sbjct: 302 IHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGH 361

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHV 270
            ++A +L   M +  +    NE T  +VL AC+H G L  G ++   L +  G+  +   
Sbjct: 362 AEEALELSHLMNL--QGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEEN 419

Query: 271 TNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           T   ID+  + G L +A  +  ++  K   ++   ++GG     D +      ++++   
Sbjct: 420 TVGFIDLLGRAGWLKEAEHVLHTMPFKVSFVALVTLLGGCKVHGDVRRGKAFTKRIVALE 479

Query: 330 IE-PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            E P     L+ + A A       G+W      + + +   V   T        C +I+ 
Sbjct: 480 PENPGSYVLLNNMYAAA-------GRWDDVAKLRRYMRKKGVKRQTG-------CSSIEY 525

Query: 389 AEQVFD 394
            +++++
Sbjct: 526 RDKIYE 531


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 253/690 (36%), Positives = 390/690 (56%), Gaps = 31/690 (4%)

Query: 47  KQVHSQIIKTGLHNT---QFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIR 103
           ++ H+  +K G  +    +F  + L+ + A     D +  L         + V WN +I 
Sbjct: 174 REAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMIS 233

Query: 104 GHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG-LE 162
                     A++    M+  G  P+  TF   L +C+++  +  G+++HA VLK   L 
Sbjct: 234 LLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLA 293

Query: 163 SDPFVHTSLINMYAQNGELESARLVFN--KSSLRDAVSYTALITGYASRGYLDD-ARQLF 219
           ++ FV ++L++MYA N ++  AR VF+      R    + A+I GYA  G +D+ A +LF
Sbjct: 294 ANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELF 353

Query: 220 DEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYS 279
             M   E    P+E+T+  VL ACA          V   +    + SN  V NAL+DMY+
Sbjct: 354 SRMEA-EAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYA 412

Query: 280 KCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML--------QSNIE 331
           + G + +A  +F  I+ RD++SWN +I G        EA  L R+M         ++ +E
Sbjct: 413 RLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETMLE 472

Query: 332 ------------PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
                       PN++T +++LP CA L A   GK IH Y  + H   +++++ ++L+DM
Sbjct: 473 GDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVR-HALESDLAVGSALVDM 531

Query: 380 YAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG-LQPDDIT 438
           YAKCG +  A  VFD +  + + +WN +I    MHG  D+AL+LF RM+  G   P+++T
Sbjct: 532 YAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVT 591

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
           F+  L+AC+H+GL+D G + F  M +DY   P    + C+VD+LGRAG  DEA  ++ +M
Sbjct: 592 FIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSM 651

Query: 499 EM-KPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557
              +   + W+++LGACR+H  ++LG   A+ L ELEP+    YVLL N+Y+ AG W++ 
Sbjct: 652 APGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFELEPDEASHYVLLCNIYSAAGLWENS 711

Query: 558 ATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFV 617
             +R  +  +G+ K PGCS IE+   +H F+ G+  HP+S  ++  +D +   + + G+V
Sbjct: 712 TEVRGMMRQRGVAKEPGCSWIELDGAIHRFMAGESAHPESAQVHAHMDALWERMRREGYV 771

Query: 618 PDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLI 677
           PDTS VL+D+DE  K   L +HSEKLAIA+GL+   PG TIR+ KNLRVC +CH A K I
Sbjct: 772 PDTSCVLHDVDEAEKAAMLRYHSEKLAIAFGLLRAPPGATIRVAKNLRVCNDCHEAAKFI 831

Query: 678 SKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           S++  REI+ RD  RFHHF+DG CSC DYW
Sbjct: 832 SRMVGREIVLRDVRRFHHFRDGTCSCGDYW 861



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 142/484 (29%), Positives = 228/484 (47%), Gaps = 43/484 (8%)

Query: 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGL--ESDPFVHTSLINMYAQNGELESARLVF 188
           +  P  +KS A +      + IH   L+  L     P V  +L+  YA+ G+L++A  +F
Sbjct: 49  FALPPAIKSAAALRDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALALF 108

Query: 189 NKS--SLRDAVSYTALITG---YASRGY-LDDARQLFDEMPIREENFVPNESTVVTVLSA 242
             +   LRDAVSY +LI+    +   G+ LD  R +  +  +       +  T+V+VL A
Sbjct: 109 AATPPDLRDAVSYNSLISALCLFRRWGHALDALRDMLADHEV-------SSFTLVSVLLA 161

Query: 243 CAHMGSL--ELGNWVCSLIEGHGL---GSNLHVTNALIDMYSKCGDLVKARDLFESIEKR 297
           C+H+      LG    +    HG    G      NAL+ MY++ G +  A+ LF S    
Sbjct: 162 CSHLADQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAG 221

Query: 298 --DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKW 355
             D+++WN MI         +EA+ +   M+   + P+ VTF S LPAC+ L  L +G+ 
Sbjct: 222 VGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGRE 281

Query: 356 IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY--KTLASWNAMISGLAM 413
           +HA++ K+     N  + ++L+DMYA    +  A +VFD +    + L  WNAMI G A 
Sbjct: 282 VHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQ 341

Query: 414 HGKAD-KALSLFSRMIGE-GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK 471
           HG  D +A+ LFSRM  E G  P + T  GVL AC  + +   G++  +  +    ++  
Sbjct: 342 HGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVF-TGKEAVHGYVVKRDMASN 400

Query: 472 LQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLL 531
                 ++D+  R G  DEA  +   ++++ D   W +L+  C V G +    S A  L+
Sbjct: 401 RFVQNALMDMYARLGRMDEAHTIFAMIDLR-DIVSWNTLITGCIVQGLI----SEAFQLV 455

Query: 532 ELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL---NDKGMKKVPGCSSIEV---GSVVH 585
             E + P +      M  G    DD +    R    N   M  +PGC+ +     G  +H
Sbjct: 456 R-EMQLPSSAASGETMLEG----DDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIH 510

Query: 586 EFLV 589
            + V
Sbjct: 511 GYAV 514



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 84/186 (45%), Gaps = 8/186 (4%)

Query: 5   PSSLTLSPSILHFPPSSDPPYKLLQNQPSL-ALLSKCTNMQ---NIKQVHSQIIKTGLHN 60
           PSS     ++L    +S    + + N  +L  LL  C  +      K++H   ++  L +
Sbjct: 461 PSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALES 520

Query: 61  TQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVR 120
                S L+++ A    G L+ A  VF+ +   N + WN +I  + +      A+  + R
Sbjct: 521 DLAVGSALVDMYA--KCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDR 578

Query: 121 MILSG-FVPNTYTFPFILKSCAKISAISEGKQIHAHVLK-LGLESDPFVHTSLINMYAQN 178
           M+ +G   PN  TF   L +C+    +  G ++   + +  G E  P++H  ++++  + 
Sbjct: 579 MVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRA 638

Query: 179 GELESA 184
           G L+ A
Sbjct: 639 GRLDEA 644


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 255/692 (36%), Positives = 398/692 (57%), Gaps = 8/692 (1%)

Query: 19  PSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKT--GLHNTQFALSKLIEICAVSP 76
           P++  P   L     L L +   N++  K +HS +I T     N+   ++ LI   A   
Sbjct: 21  PNAVSPSSPLDLIKLLKLSADTKNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYA--K 78

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV-PNTYTFPF 135
              +S A  +F+ + E N V W+ ++ G+ L+   +  I+    MI  G V PN Y    
Sbjct: 79  VNQVSIAHNLFDRMPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAI 138

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
            + SC     + EG+Q H  +LK G     +V  +L++MY++   ++ A  V+N+  + D
Sbjct: 139 AISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVND 198

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
            V+Y ++++     GYL +  ++   M    E+   ++ T V   S CA +  L LG  V
Sbjct: 199 IVAYNSILSSLVENGYLREGLEVLRSMV--SESVKWDKVTFVNAFSLCASLKDLRLGLHV 256

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
              +    +  + +V++A+I+MY KCG  + AR +F+ ++ R+V+ W  ++        +
Sbjct: 257 HGKMLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCF 316

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
           +EAL LF +M Q N++ N+ T+  +L ACA L A   G  +H + +K+  K ++V +  +
Sbjct: 317 EEALNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFK-HHVMVGNA 375

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           LI+MYAK G+I+AA++VF  M ++ + +WNAMI G + HG   KAL +F  M+     P+
Sbjct: 376 LINMYAKSGDIEAAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPN 435

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
            +TF GVLSAC H GL+  G  Y + +++ + + P L+HY C+V LL + G  +EA   +
Sbjct: 436 YVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFM 495

Query: 496 KTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555
           +T  +K D   W +LL AC VH    LG  VA+ +LE++P + G Y LLSN+YA   RWD
Sbjct: 496 RTAPVKWDVVAWRTLLNACHVHQNYGLGRWVAEFVLEMDPNDVGTYTLLSNIYAKEKRWD 555

Query: 556 DVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSG 615
            V  +R  + DK +KK PG S IE+G+V H F   D  HP     Y+ + E+ A+++  G
Sbjct: 556 GVVKVRKLMRDKKIKKEPGVSWIEIGNVTHIFTSEDNKHPDYGQTYQKVKELLAMIKPLG 615

Query: 616 FVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATK 675
           + PD   VL+D+++E KE  LS+HSEKLAIAYGL+      +I ++KNLR+C +CHSA +
Sbjct: 616 YTPDIGAVLHDVEDEQKEYYLSYHSEKLAIAYGLLKLPSEASILVIKNLRICDDCHSAVR 675

Query: 676 LISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           LISK+ NR I+ RD NRFHHF+DG CSC DYW
Sbjct: 676 LISKVTNRVIVVRDANRFHHFRDGRCSCLDYW 707


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 245/581 (42%), Positives = 360/581 (61%), Gaps = 5/581 (0%)

Query: 128 PNT-YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARL 186
           P T Y +  +L+SC    A++ GKQ+HA    LG+  +  + T L+++YA +  L +AR 
Sbjct: 44  PTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARN 103

Query: 187 VFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHM 246
           +F+K   ++   +  LI GYA  G  D+A  L+ +M   +    P+  T+  VL AC+ +
Sbjct: 104 LFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKM--LDYGLRPDNFTLPFVLKACSAL 161

Query: 247 GSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMI 306
            ++  G  +   +   G   +L V  ALIDMY+KCG ++ A  +F+ I  RD + WN M+
Sbjct: 162 SAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSML 221

Query: 307 GGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK 366
             Y       E++ L R+M  + + P + T ++V+ + A +  L  G+ IH +    H  
Sbjct: 222 AAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGF-GWRHGF 280

Query: 367 LNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSR 426
            +N  + T+LIDMYAKCG++K A  +F+ +  K + SWNA+I+G AMHG A  AL LF +
Sbjct: 281 QSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDK 340

Query: 427 MIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAG 486
           M  E  +PD ITFVGVL+AC+   LLD GR  +N M++DY I+P +QHY CM+DLLG  G
Sbjct: 341 MRKED-RPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCG 399

Query: 487 LFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSN 546
             DEA  L++ M +KPD+ +W +LL +C++HG +EL E   + L+ELEP++ G YV+L+N
Sbjct: 400 QLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPDDSGNYVILAN 459

Query: 547 MYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDE 606
           MYA +G+W+ V  +R  + DK +KK   CS IEV + V+ FL GD  H  S  IY  L  
Sbjct: 460 MYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVKNKVYAFLAGDVSHSNSDAIYAELKR 519

Query: 607 IDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRV 666
           ++ L+ ++G+ PDT  V +D++E+ K   +  HSE+LAIA+GLIST PGT + I KNLR+
Sbjct: 520 LEGLMHEAGYAPDTGSVFHDVEEDEKTSMVCSHSERLAIAFGLISTSPGTRLLITKNLRI 579

Query: 667 CGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           C +CH A K ISKI  REI  RD NR+H FK G CSC D+W
Sbjct: 580 CEDCHVAIKFISKIMEREITVRDVNRYHSFKHGMCSCGDHW 620



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 145/430 (33%), Positives = 230/430 (53%), Gaps = 17/430 (3%)

Query: 11  SPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSK 67
           + S+  FPP     Y         +LL  C + + +   KQ+H+Q    G+   Q   +K
Sbjct: 34  TASVDSFPPQPTTHYGYT------SLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATK 87

Query: 68  LIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV 127
           L+ + AVS    L  A  +F+ I + N  +WN +IRG++ +     AI  Y +M+  G  
Sbjct: 88  LVHLYAVS--NSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLR 145

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P+ +T PF+LK+C+ +SAI EG+ IH +V+K G E D FV  +LI+MYA+ G +  A  V
Sbjct: 146 PDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRV 205

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
           F+K  +RDAV + +++  YA  G+ D++  L  EM        P E+T+VTV+S+ A + 
Sbjct: 206 FDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMA--ANGVRPTEATLVTVISSSADVA 263

Query: 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG 307
            L  G  +      HG  SN  V  ALIDMY+KCG +  A  LFE + ++ V+SWN +I 
Sbjct: 264 CLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIIT 323

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
           GY        AL LF +M + +  P+ +TF+ VL AC+    LD G+ ++  + +++   
Sbjct: 324 GYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGIT 382

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHGKADKALSLFSR 426
             V  +T +ID+   CG +  A  +   M  K  +  W A+++   +HG  + A     +
Sbjct: 383 PTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEK 442

Query: 427 MIGEGLQPDD 436
           +I   L+PDD
Sbjct: 443 LI--ELEPDD 450


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 264/665 (39%), Positives = 377/665 (56%), Gaps = 16/665 (2%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           +H   +K GL       + ++ +   S  G L+ A + F      N V WN +I   SL 
Sbjct: 270 IHGLAVKLGLSEEVMVNNAMVYM--YSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLE 327

Query: 109 SSPVVAIKFYVRMILSG--FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
                A      M + G     N  T   +L +C     +   K++H +  +       F
Sbjct: 328 GDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFR-----HCF 382

Query: 167 VHTSLINM----YAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
            H  L N     YA+ G L SA  VF+    +   S+ ALI G+A  G    A  L  +M
Sbjct: 383 QHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQM 442

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
               +   P+  T+ ++L ACAH+ SL+ G  +   +  +GL ++  V  +L+  Y  CG
Sbjct: 443 TYSGQQ--PDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCG 500

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
               AR LF+ ++ ++++SWN MI GY+      E+L LFR+ L   I+ +++  +SV  
Sbjct: 501 KASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFG 560

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           AC+ L AL LGK  H Y+ K  Q   +  +  S+IDMYAK G IK + +VFDG+  K +A
Sbjct: 561 ACSQLSALRLGKEAHGYVLKALQT-EDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVA 619

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           SWNA+I    +HG   +A+ L+ RM   G  PD  T++G+L AC HAGL++ G +YF  M
Sbjct: 620 SWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEM 679

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
                I PKL+HY C++D+L RAG  D+A  L+  M  + D  IW+SLL +CR  G LE+
Sbjct: 680 QNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEI 739

Query: 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582
           GE VAK LLELEP+    YVLLSN+YAG G+WD V  +R  + + G++K  GCS IEVG 
Sbjct: 740 GEKVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGG 799

Query: 583 VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEK 642
            V+ F+VGD + P+S  I  +   ++  + + G+ P+TS VL+++ EE K   L  HSEK
Sbjct: 800 RVYSFVVGDSLQPKSAEIRVIWRRLEERISEIGYKPNTSSVLHEVGEEEKIDILRGHSEK 859

Query: 643 LAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCS 702
           LAI++GL+ T  GTT+RI KNLR+C +CH+A KLISK   REI+ RD  RFHHF+DG CS
Sbjct: 860 LAISFGLLKTTKGTTLRIYKNLRICADCHNAAKLISKAVEREIVVRDNKRFHHFRDGLCS 919

Query: 703 CNDYW 707
           C DYW
Sbjct: 920 CCDYW 924



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 190/662 (28%), Positives = 322/662 (48%), Gaps = 67/662 (10%)

Query: 2   ALPPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALL-SKCTNMQNI---KQVHSQIIKTG 57
           AL  +    +  IL    S +  +  LQ + ++ LL   C N ++I   +++H  +  + 
Sbjct: 14  ALCETDNLTTALILIQSHSQNAAFISLQAKEAIGLLLQACGNQKDIETGRRLHKFVSDST 73

Query: 58  LHNTQFAL-SKLIEICAV--SPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVA 114
            +   + L ++LI++ A+  SP      + LVF+ +   N + WN ++ G++ +      
Sbjct: 74  HYRNDYVLNTRLIKMYAMCGSPLD----SRLVFDNMETKNLIQWNALVSGYTRNGLYGDV 129

Query: 115 IKFYVRMIL-SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLIN 173
           +K ++ ++  + F P+ +TFP ++K+C  I  +  G+ IH  V+K+GL  D FV  +L+ 
Sbjct: 130 VKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVG 189

Query: 174 MYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
           MY + G ++ A  VF+     + VS+ ++I  ++  G+  D+  L  EM + EE  +P+ 
Sbjct: 190 MYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEM-LGEEGLLPDV 248

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
            TVVT+L  CA  G +++G  +  L    GL   + V NA++ MYSKCG L +A+  F  
Sbjct: 249 VTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVK 308

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQM-LQ-SNIEPNDVTFLSVLPACAYLGALD 351
              ++V+SWN MI  ++   D  EA  L ++M +Q   ++ N+VT L+VLPAC     L 
Sbjct: 309 NNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLR 368

Query: 352 LGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGL 411
             K +H Y  ++     +V L  + I  YAKCG + +AE+VF G+G KT++SWNA+I G 
Sbjct: 369 SLKELHGYSFRHC--FQHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGH 426

Query: 412 AMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF-----NAMIQDY 466
           A +G   KAL L  +M   G QPD  T   +L AC H   L  G++       N +  D+
Sbjct: 427 AQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDF 486

Query: 467 KISPK-LQHY------------------------GCMVDLLGRAGLFDEAEALLK---TM 498
            +    L HY                          M+    + GL  E+ AL +   + 
Sbjct: 487 FVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSE 546

Query: 499 EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE-LEPENPGAYVLLSNMYAGAGRWDDV 557
            ++       S+ GAC     L LG+    ++L+ L+ E+      + +MYA +G   + 
Sbjct: 547 GIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKES 606

Query: 558 ATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFV 617
             +   L D   K V   ++I         +V   +H   K   E+ +     ++K G +
Sbjct: 607 RKVFDGLKD---KNVASWNAI---------IVAHGIHGHGKEAIELYER----MKKVGQM 650

Query: 618 PD 619
           PD
Sbjct: 651 PD 652


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 264/715 (36%), Positives = 395/715 (55%), Gaps = 85/715 (11%)

Query: 71  ICAVSPFGDLSYALLVFETIREPNQ--VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV- 127
           + A +  G L  A+  F+ + +  +  V+ N +I  ++ +S    A+  +  ++ SG + 
Sbjct: 95  VAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLR 154

Query: 128 PNTYTFPFILKSCAKISAIS--EGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELES-- 183
           P+ Y+F  +L +   +  IS     Q+   VLK G      V  +L+ +Y +   LE+  
Sbjct: 155 PDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATR 214

Query: 184 -ARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR----------------- 225
            AR V ++   +DA+++T ++ GY  RG +  AR +F+E+ ++                 
Sbjct: 215 DARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGM 274

Query: 226 -EENF----------VP-NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH---- 269
             E F          VP +E T  +VLSACA+ G    G  V      HG  + L     
Sbjct: 275 VVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSV------HGQITRLQPNFV 328

Query: 270 ------VTNALIDMYSKCGDLVKARDLFESIEKRDVISWN-------------------- 303
                 V NAL+ +YSKCG++  AR +F++++ +DV+SWN                    
Sbjct: 329 PEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFE 388

Query: 304 -----------VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL 352
                      VM+ GY H    ++AL LF +M   +++P D T+   + AC  LG+L  
Sbjct: 389 EMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKH 448

Query: 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLA 412
           GK +H ++ +   + +N S   +LI MYA+CG +K A  +F  M      SWNAMIS L 
Sbjct: 449 GKQLHGHLVQLGFEGSN-SAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALG 507

Query: 413 MHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL 472
            HG   +AL LF RM+ EG+ PD I+F+ VL+ACNH+GL+D G QYF +M +D+ I P  
Sbjct: 508 QHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGE 567

Query: 473 QHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
            HY  ++DLLGRAG   EA  L+KTM  +P  +IW ++L  CR  G +ELG   A  L +
Sbjct: 568 DHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFK 627

Query: 533 LEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDK 592
           + P++ G Y+LLSN Y+ AGRW D A +R  + D+G+KK PGCS IE G+ VH F+VGD 
Sbjct: 628 MTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGDT 687

Query: 593 VHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLIST 652
            HP++  +Y+ L+ + A + K G+VPDT  VL+DM+   KE  L  HSE+LA+ +GL+  
Sbjct: 688 KHPEAHKVYKFLEMVGARMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLKL 747

Query: 653 KPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            PG T+ ++KNLR+C +CH+    +SK   REI+ RD  RFHHFKDG CSC +YW
Sbjct: 748 PPGATVTVLKNLRICDDCHAVMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/427 (26%), Positives = 182/427 (42%), Gaps = 77/427 (18%)

Query: 165 PFVHTSLINMYAQNGELESARLVFNK--SSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
           P   TSL+  YA  G L +A   F+    + RD V + A+I+ YA   +   A  +F  +
Sbjct: 88  PVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSL 147

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLEL---GNWVCSLIEGHGLGSNLHVTNALIDMYS 279
            +   +  P++ +   +LSA  H+ ++ +       CS+++  G G  L V+NAL+ +Y 
Sbjct: 148 -LASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKS-GAGGVLSVSNALVALYM 205

Query: 280 KCGDLVKARD---LFESIEKRDVISWNV-------------------------------M 305
           KC  L   RD   + + +  +D ++W                                 M
Sbjct: 206 KCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAM 265

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK--- 362
           I GY H+    EA  LFR+M+   +  ++ TF SVL ACA  G    GK +H  I +   
Sbjct: 266 ISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQP 325

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA---------------- 406
           N      + +  +L+ +Y+KCGNI  A ++FD M  K + SWN                 
Sbjct: 326 NFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVE 385

Query: 407 ---------------MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
                          M+SG    G ++ AL LF+RM  E ++P D T+ G +SAC   G 
Sbjct: 386 VFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGS 445

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           L  G+Q    ++Q             ++ +  R G   EA  +   M    D+  W +++
Sbjct: 446 LKHGKQLHGHLVQ-LGFEGSNSAGNALITMYARCGAVKEANLMFLVMP-NIDSVSWNAMI 503

Query: 512 GACRVHG 518
            A   HG
Sbjct: 504 SALGQHG 510



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 161/347 (46%), Gaps = 16/347 (4%)

Query: 14  ILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICA 73
           I    P+  P   L  N   + L SKC N+   +++   +    + +    LS  +E   
Sbjct: 320 ITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSC 379

Query: 74  VSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTF 133
                 L  A+ VFE +   N++ W  ++ G+        A+K + RM      P  YT+
Sbjct: 380 ------LDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTY 433

Query: 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL 193
              + +C ++ ++  GKQ+H H+++LG E       +LI MYA+ G ++ A L+F     
Sbjct: 434 AGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPN 493

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG- 252
            D+VS+ A+I+     G+  +A +LFD M    E   P+  + +TVL+AC H G ++ G 
Sbjct: 494 IDSVSWNAMISALGQHGHGREALELFDRMV--AEGIYPDRISFLTVLTACNHSGLVDEGF 551

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVIS-WNVMIGGYTH 311
            +  S+    G+         LID+  + G + +ARDL +++      S W  ++ G   
Sbjct: 552 QYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRT 611

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
           + D +       Q+ +   + +D T+  +L +  Y  A   G+W+ A
Sbjct: 612 SGDMELGAHAADQLFKMTPQ-HDGTY--ILLSNTYSAA---GRWVDA 652


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 248/580 (42%), Positives = 361/580 (62%), Gaps = 5/580 (0%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P++  +  +L++  ++  +    Q+HAHV+  G     F+ T L+N+    G +   R +
Sbjct: 10  PHSPAYNLLLQAGPRLKLL---HQVHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQI 66

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
           F      D+  +T+LI    S+ +      L+    +   N  P+  T  +V+ +CA + 
Sbjct: 67  FLIVPNPDSFLFTSLIRS-TSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLV 125

Query: 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG 307
           +L  G  +   +  +G GS+++V  AL+  Y KCG L  AR +F+ +  R V++WN MI 
Sbjct: 126 ALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMIS 185

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
           GY      KEA+ LF +M +  +EPN  TF+SVL ACA+LGA  LG W+H Y   N   L
Sbjct: 186 GYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDL 245

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
           N V L TSLI+MY +CGN+  A +VFD M  + + +W AMISG   +G   +A+ LF  M
Sbjct: 246 N-VVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEM 304

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
              GL P+ ITFV VLSAC HAGL++ GR+ F +M ++Y++ P+++H+ C+VD+LGRAGL
Sbjct: 305 RRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGL 364

Query: 488 FDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547
            DEA   +K +  +P  AIWT++LGAC++H    LG  VA+H L  EP NP  YV+LSN+
Sbjct: 365 LDEAYNFIKEIHEEPAPAIWTAMLGACKMHKNFGLGAQVAEHRLASEPGNPAHYVILSNI 424

Query: 548 YAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEI 607
           YA AGR D V  +R  +  K +KK  G S+I++    + F +GDK H ++  IY  LD++
Sbjct: 425 YALAGRMDQVEMVRDNMIRKCLKKQVGYSTIDLDRKTYLFSMGDKSHTETNEIYHYLDQL 484

Query: 608 DALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVC 667
                ++G+V  +  V+++++EE +E AL +HSEKLAIA+GL+ T  GT IRIVKNLR+C
Sbjct: 485 MRKCREAGYVTVSDSVMHELEEEEREYALGYHSEKLAIAFGLLKTSRGTVIRIVKNLRMC 544

Query: 668 GNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            +CHSA K IS I NREII RD+ RFHHFK+G+CSC DYW
Sbjct: 545 EDCHSAIKYISVISNREIIVRDKLRFHHFKNGSCSCLDYW 584



 Score =  253 bits (647), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 142/402 (35%), Positives = 231/402 (57%), Gaps = 17/402 (4%)

Query: 16  HFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEI-CAV 74
           H  P S     LLQ  P L LL          QVH+ +I +G   ++F L+KL+ + CA 
Sbjct: 7   HKHPHSPAYNLLLQAGPRLKLL---------HQVHAHVIVSGYGCSRFLLTKLLNLACAA 57

Query: 75  SPFGDLSYALLVFETIREPNQVIWNNIIRGHS-LSSSPVVAIKFYVRMILSGFVPNTYTF 133
              G +SY   +F  +  P+  ++ ++IR  S   +  V ++ FY RM+LS   P+ YTF
Sbjct: 58  ---GSISYTRQIFLIVPNPDSFLFTSLIRSTSKFHNFSVYSLYFYTRMVLSNVAPSNYTF 114

Query: 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL 193
             ++KSCA + A+  G+ IH HVL  G  SD +V T+L++ Y + G L +AR VF+K   
Sbjct: 115 TSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRD 174

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
           R  V++ ++I+GY   G+  +A +LFD M  +E    PN +T V+VLSACAH+G+  LG 
Sbjct: 175 RSVVTWNSMISGYEQNGFAKEAIRLFDRM--KEIGVEPNSATFVSVLSACAHLGAFILGC 232

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTS 313
           WV     G+GL  N+ +  +LI+MY++CG++ KAR++F+S+++R+V++W  MI GY    
Sbjct: 233 WVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNG 292

Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
              +A+ LF +M ++ + PN +TF++VL ACA+ G ++ G+ +   + + ++ +  V   
Sbjct: 293 YGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEHH 352

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTL-ASWNAMISGLAMH 414
             L+DM  + G +  A      +  +   A W AM+    MH
Sbjct: 353 VCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAMLGACKMH 394


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 269/694 (38%), Positives = 407/694 (58%), Gaps = 22/694 (3%)

Query: 28   LQNQPSLALLSKCTNMQNIKQ-------VHSQIIKTGLHNTQFALSKLIEICAVSPFGD- 79
            + ++  + LLS  T   N+K+       VH+ + ++GL + + ++   +    V+ +G  
Sbjct: 449  INSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNAL----VNMYGKC 504

Query: 80   --LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
              +  A  VF+ +   + V WN++I G   +     A+  +  M  +G VP+ ++    L
Sbjct: 505  TAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTL 564

Query: 138  KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
             SC+ +  ++ G+QIH    K GL+ D  V  +L+ +YA+   +   + VF +    D V
Sbjct: 565  SSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQV 624

Query: 198  SYTALITGYAS-RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
            S+ + I   A     +  A + F EM   +  + PN  T + +L+A +    L LG+ + 
Sbjct: 625  SWNSFIGALAKYEASVLQALKYFLEM--MQAGWRPNRVTFINILAAVSSFSVLGLGHQIH 682

Query: 257  SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI-EKRDVISWNVMIGGYTHTSDY 315
            +LI  + +  +  + NAL+  Y KC  +     +F  + E+RD +SWN MI GY H+   
Sbjct: 683  ALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGIL 742

Query: 316  KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
             +A+ L   M+Q   + +  TF +VL ACA +  L+ G  +HA   +   + ++V + ++
Sbjct: 743  HKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLE-SDVVVGSA 801

Query: 376  LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
            L+DMYAKCG I  A + F+ M  + + SWN+MISG A HG   KAL +F+RM   G  PD
Sbjct: 802  LVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPD 861

Query: 436  DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
             +TFVGVLSAC+H GL+D G ++F +M + Y +SP+++H+ CMVDLLGRAG   + E  +
Sbjct: 862  HVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFI 921

Query: 496  KTMEMKPDAAIWTSLLGA-CRVHGR-LELGESVAKHLLELEPENPGAYVLLSNMYAGAGR 553
            KTM M P+  IW ++LGA CR +GR  ELG+  AK L+ELEP+N   YVLLSNM+A  G 
Sbjct: 922  KTMPMDPNILIWRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGN 981

Query: 554  WDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEK 613
            W+DV   R  +    +KK  GCS + +   VH F+ GD+ HP+ + IYE L E+   +  
Sbjct: 982  WEDVVEARLAMRKAAVKKDAGCSWVNMKDGVHLFVAGDQTHPEKEKIYEKLKELMNKIRD 1041

Query: 614  SGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSA 673
            +G+VP+T   LYD++ E KE  LS+HSEKLAIA+ +++ K    IRI+KNLRVCG+CH+A
Sbjct: 1042 AGYVPETKYALYDLELENKEELLSYHSEKLAIAF-VLTRKSELPIRIMKNLRVCGDCHTA 1100

Query: 674  TKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
             K ISKI  R+II RD NRFHHF  G CSC DYW
Sbjct: 1101 FKYISKIVGRQIILRDSNRFHHFGGGMCSCGDYW 1134



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 131/484 (27%), Positives = 244/484 (50%), Gaps = 16/484 (3%)

Query: 41  TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNN 100
           +++ +   +H Q+ KTG  +  F  + LI I      G+L  A  +F+ + + N V W+ 
Sbjct: 154 SSLYDANHLHLQLYKTGFTDDVFFCNTLINI--YVRIGNLVSARKLFDEMPQKNLVSWSC 211

Query: 101 IIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKI--SAISEGKQIHAHVLK 158
           +I G++ +  P  A   +  +I SG +PN +     L++C +   + I  G QIHA + K
Sbjct: 212 LISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICK 271

Query: 159 LGLESDPFVHTSLINMYAQ-NGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ 217
           L   SD  +   L++MY+  +G ++ A  VF++   R++V++ ++I+ Y  RG    A +
Sbjct: 272 LPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFK 331

Query: 218 LFDEMPIR--EENFVPNESTVVTVLSACAHMG--SLELGNWVCSLIEGHGLGSNLHVTNA 273
           LF  M +   E N  PNE T+ ++++A   +    L L   + + IE  G   +L+V +A
Sbjct: 332 LFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSA 391

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           L++ +++ G +  A+ +F+ +  R+ ++ N ++ G       +EA  +F++M +  +E N
Sbjct: 392 LVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEM-KDLVEIN 450

Query: 334 DVTFLSVLPACAYLGALDLGKW----IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
             + + +L        L  GK     +HAY+ ++      +S+  +L++MY KC  I  A
Sbjct: 451 SESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNA 510

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
             VF  M  K   SWN+MISGL  + + ++A+S F  M   G+ P + + +  LS+C+  
Sbjct: 511 CSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSL 570

Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
           G L +GRQ      + + +   +     ++ L       +E + +   M  + D   W S
Sbjct: 571 GWLTLGRQIHGEGFK-WGLDLDVSVSNALLTLYAETDSINECQKVFFQMP-EYDQVSWNS 628

Query: 510 LLGA 513
            +GA
Sbjct: 629 FIGA 632



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 107/421 (25%), Positives = 201/421 (47%), Gaps = 27/421 (6%)

Query: 144 SAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALI 203
           S++ +   +H  + K G   D F   +LIN+Y + G L SAR +F++   ++ VS++ LI
Sbjct: 154 SSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLI 213

Query: 204 TGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS--LELGNWVCSLIEG 261
           +GY      D+A  LF    +     +PN   V + L AC   GS  ++LG  + + I  
Sbjct: 214 SGYTQNRMPDEACSLFK--GVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICK 271

Query: 262 HGLGSNLHVTNALIDMYSKC-GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALM 320
               S++ ++N L+ MYS C G +  A  +F+ I+ R+ ++WN +I  Y    D   A  
Sbjct: 272 LPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFK 331

Query: 321 LFRQM----LQSNIEPNDVTFLSVLPACAYLG--ALDLGKWIHAYIDKNHQKLNNVSLWT 374
           LF  M    ++ N+ PN+ T  S++ A   L    L L + +   I+K+   L ++ + +
Sbjct: 332 LFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKS-GFLRDLYVGS 390

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
           +L++ +A+ G +  A+ +F  M  +   + N ++ GLA   + ++A  +F  M  + ++ 
Sbjct: 391 ALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEM-KDLVEI 449

Query: 435 DDITFVGVLSACNHAGLLDIGRQ--------YFNAMIQDYKISPKLQHYGCMVDLLGRAG 486
           +  + V +LS       L  G++         F + + D +IS        +V++ G+  
Sbjct: 450 NSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIG----NALVNMYGKCT 505

Query: 487 LFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSN 546
             D A ++ + M  K D   W S++     + R E   S   H ++     P  + ++S 
Sbjct: 506 AIDNACSVFQLMPSK-DTVSWNSMISGLDHNERFEEAVSCF-HTMKRNGMVPSNFSVIST 563

Query: 547 M 547
           +
Sbjct: 564 L 564


>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
 gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
          Length = 565

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 254/571 (44%), Positives = 349/571 (61%), Gaps = 37/571 (6%)

Query: 144 SAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALI 203
           ++IS  KQIHA +L+     + F    LI  Y+++   +   ++           Y A+I
Sbjct: 25  NSISHVKQIHAQILRTIHTPNSFTWNILIQSYSKSTLHKQKAILL----------YKAII 74

Query: 204 TGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG 263
           T                    +E    P++ T   VL ACA++ SL  G  V + +   G
Sbjct: 75  TE-------------------QENELFPDKHTYPFVLKACAYLFSLFEGKQVHAHVLKLG 115

Query: 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESI-EKRDVISWNVMIGGYTHTSDYKEALMLF 322
              + ++ N+LI  Y+ CG L  AR +F+ + E R+V+SWNVMI  Y    DY   L++F
Sbjct: 116 FELDTYICNSLIHFYASCGYLETARKVFDRMCEWRNVVSWNVMIDSYAKVGDYDIVLIMF 175

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK--LNNVSLWTSLIDMY 380
            +M++   EP+  T  SV+ AC  LG+L LG W+HA++ K   K  + +V + T L+DMY
Sbjct: 176 CEMMKV-YEPDCYTMQSVIRACGGLGSLSLGMWVHAFVLKKCDKNVVCDVLVNTCLVDMY 234

Query: 381 AKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG-EGLQPDDITF 439
            KCG+++ A+QVF+GM Y+ ++SWN++I G A+HGKA  AL  F RM+  E + P+ ITF
Sbjct: 235 CKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAVHGKAKAALDYFVRMVKVEKIVPNSITF 294

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME 499
           VGVLSACNH+G++D G  YF  M ++Y + P L HYGC+VDL  RAG   EA  ++  M 
Sbjct: 295 VGVLSACNHSGMVDEGLMYFEMMTKEYNVEPSLVHYGCLVDLYARAGHIQEALNVVSEMP 354

Query: 500 MKPDAAIWTSLLGAC-RVHGRLELGESVAKHLLELEPE-NPGAYVLLSNMYAGAGRWDDV 557
           +KPDA IW SLL AC + H  +EL E +AK + E       GAYVLLS +YA A RW+DV
Sbjct: 355 IKPDAVIWRSLLDACYKQHASVELSEEMAKQIFESNGSVCGGAYVLLSKVYASASRWNDV 414

Query: 558 ATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFV 617
             +R  +NDKG+ K PGCS IE+    HEF  GD  HPQSK IY+ ++EI   LE  G++
Sbjct: 415 GLLRKLMNDKGVSKKPGCSLIEINGAAHEFFAGDTNHPQSKDIYKFMNEIQEKLESVGYL 474

Query: 618 PDTSEV-LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKL 676
           PD S   L D   E K+  +  HSE+LAIA+GL+++KP   IR+ KNLRVC +CH  TKL
Sbjct: 475 PDYSGAPLIDEINEGKQNTMRLHSERLAIAFGLLNSKPSMPIRVFKNLRVCNDCHKVTKL 534

Query: 677 ISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           IS+I+N EII RDR RFHHFKDG+CSC DYW
Sbjct: 535 ISRIYNVEIIVRDRVRFHHFKDGSCSCMDYW 565



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 127/385 (32%), Positives = 200/385 (51%), Gaps = 46/385 (11%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ 95
           LL++  ++ ++KQ+H+QI++T                                 I  PN 
Sbjct: 20  LLNQSNSISHVKQIHAQILRT---------------------------------IHTPNS 46

Query: 96  VIWNNIIRGHSLSS-SPVVAIKFYVRMIL---SGFVPNTYTFPFILKSCAKISAISEGKQ 151
             WN +I+ +S S+     AI  Y  +I    +   P+ +T+PF+LK+CA + ++ EGKQ
Sbjct: 47  FTWNILIQSYSKSTLHKQKAILLYKAIITEQENELFPDKHTYPFVLKACAYLFSLFEGKQ 106

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK-SSLRDAVSYTALITGYASRG 210
           +HAHVLKLG E D ++  SLI+ YA  G LE+AR VF++    R+ VS+  +I  YA  G
Sbjct: 107 VHAHVLKLGFELDTYICNSLIHFYASCGYLETARKVFDRMCEWRNVVSWNVMIDSYAKVG 166

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE---GHGLGSN 267
             D    +F EM    + + P+  T+ +V+ AC  +GSL LG WV + +       +  +
Sbjct: 167 DYDIVLIMFCEMM---KVYEPDCYTMQSVIRACGGLGSLSLGMWVHAFVLKKCDKNVVCD 223

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
           + V   L+DMY KCG L  A+ +FE +  RDV SWN +I G+      K AL  F +M++
Sbjct: 224 VLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAVHGKAKAALDYFVRMVK 283

Query: 328 -SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
              I PN +TF+ VL AC + G +D G      + K +    ++  +  L+D+YA+ G+I
Sbjct: 284 VEKIVPNSITFVGVLSACNHSGMVDEGLMYFEMMTKEYNVEPSLVHYGCLVDLYARAGHI 343

Query: 387 KAAEQVFDGMGYKTLAS-WNAMISG 410
           + A  V   M  K  A  W +++  
Sbjct: 344 QEALNVVSEMPIKPDAVIWRSLLDA 368


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 253/616 (41%), Positives = 361/616 (58%), Gaps = 40/616 (6%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P   ++  + +    ++ +  G Q+HAH+L  GL+    V + ++  YA +G+++S+  V
Sbjct: 68  PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
           FN      ++ + ++I  YA  G+ +  R +     +    F  +  T   VL +   + 
Sbjct: 128 FNGIGEPSSLLFNSMIRAYARYGFAE--RTVATYFSMHSWGFTGDYFTFPFVLKSSVELL 185

Query: 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG 307
           S+ +G  V  LI   GL  +L+V  +LI +Y KCG++  A  +F+++  RDV SWN ++ 
Sbjct: 186 SVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLA 245

Query: 308 GYTHT-------------------------SDY------KEALMLFRQMLQ--SNIEPND 334
           GYT +                         S Y      ++AL LF +M++  S + PN 
Sbjct: 246 GYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNW 305

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN-NVSLWTSLIDMYAKCGNIKAAEQVF 393
           VT +SVLPACA L  L+ G+ IH    +    LN N S+  +L  MYAKCG++  A   F
Sbjct: 306 VTIMSVLPACAQLSTLERGRQIHELACR--MGLNSNASVLIALTAMYAKCGSLVDARNCF 363

Query: 394 DGMGY--KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           D +    K L +WN MI+  A +G   +A+S F  MI  G+QPDDITF G+LS C+H+GL
Sbjct: 364 DKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGL 423

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           +D+G +YFN M   Y I+P+++HY C+ DLLGRAG   EA  L+  M M    +IW SLL
Sbjct: 424 VDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLL 483

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
            ACR H  LE+ E+ A+ L  LEPEN G YVLLSNMYA AGRW +V  +R  +  +G KK
Sbjct: 484 AACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKK 543

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
            PGCS IE+    H FL GD  HPQ K IY  L+ +   ++ +G+ PDTS VL+D+ EE 
Sbjct: 544 SPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEE 603

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           KE  L  HSEKLA+A+G+++T   T +R+ KNLR+CG+CH+A   IS+I+ RE+I RD N
Sbjct: 604 KEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDIN 663

Query: 692 RFHHFKDGNCSCNDYW 707
           RFHHFK G CSC DYW
Sbjct: 664 RFHHFKGGCCSCGDYW 679



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 136/462 (29%), Positives = 233/462 (50%), Gaps = 47/462 (10%)

Query: 4   PPSS---------LTLSPSILHF--PPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQ 52
           PPSS         LT+S ++ +   P S+  P  +L   P    L+    ++   QVH+ 
Sbjct: 36  PPSSPPFKCSISPLTISATLQNLLQPLSAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAH 95

Query: 53  IIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPV 112
           ++  GL  T    SK++   A S  GD+  ++ VF  I EP+ +++N++IR ++      
Sbjct: 96  MLLRGLQPTALVGSKMVAFYASS--GDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAE 153

Query: 113 VAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLI 172
             +  Y  M   GF  + +TFPF+LKS  ++ ++  GK +H  +L++GL+ D +V TSLI
Sbjct: 154 RTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLI 213

Query: 173 NMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP--------- 223
            +Y + GE+  A  VF+  ++RD  S+ AL+ GY   G +D A  +F+ MP         
Sbjct: 214 ILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTT 273

Query: 224 ---------------------IREENFV-PNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
                                ++E++ V PN  T+++VL ACA + +LE G  +  L   
Sbjct: 274 MISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACR 333

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK--RDVISWNVMIGGYTHTSDYKEAL 319
            GL SN  V  AL  MY+KCG LV AR+ F+ + +  +++I+WN MI  Y       +A+
Sbjct: 334 MGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAV 393

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
             FR+M+Q+ I+P+D+TF  +L  C++ G +D+G     ++   +     V  +  + D+
Sbjct: 394 STFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADL 453

Query: 380 YAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHGKADKA 420
             + G +  A ++   M      S W ++++    H   + A
Sbjct: 454 LGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMA 495


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 221/481 (45%), Positives = 325/481 (67%), Gaps = 4/481 (0%)

Query: 230 VPNESTVVTVLSACAHM-GSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD--LVK 286
           VPN+ T   +L ACA + GS ++G    +     G  ++ +V+N LI MYS  G   L  
Sbjct: 123 VPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGD 182

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           AR++F+ + K   ++W+ MIGGY       +A+ LFR+M  + ++ ++VT + VL A   
Sbjct: 183 ARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATD 242

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
           LGAL+L +W+  ++++      +V+L  +LID  AKCG++  A  VF+GM  +++ SW +
Sbjct: 243 LGALELARWVRRFVEREGIG-KSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTS 301

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
           +I  LAM G+  +A+ +F  M   G+ PDD+ F+GVL+AC+HAG++D G  YF+AM  +Y
Sbjct: 302 VIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEY 361

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
            I PK++HYGCMVD+ GRAG+ + A   ++TM ++P+  IW SL+ ACR HGRLELGES+
Sbjct: 362 GIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESI 421

Query: 527 AKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHE 586
            + LL   P +   Y++LSN++A   RW + + IR  ++ +G+KKVPGCS +E+   VHE
Sbjct: 422 TRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHE 481

Query: 587 FLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIA 646
           F+ GD+ HPQ K IY M++E+   L + G +  TSEVL D+DEE KEGAL  HSEKLAIA
Sbjct: 482 FIAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEEDKEGALQWHSEKLAIA 541

Query: 647 YGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDY 706
           + L+ T PGT +R+VKNLRVC +CH+A K IS+++ REI+ RDR+RFH FKDG+CSC D+
Sbjct: 542 FALLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDF 601

Query: 707 W 707
           W
Sbjct: 602 W 602



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 126/416 (30%), Positives = 210/416 (50%), Gaps = 10/416 (2%)

Query: 23  PPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSY 82
           P       Q  L LL+  +   ++ Q  + ++K+GLH     L++L    A +    L  
Sbjct: 15  PSAARAAEQHCLRLLAASSTPTSLLQSVAFLLKSGLHANSLVLTRLFAASASAAPALLDP 74

Query: 83  ALLVFETIREP-NQVIWNNIIRGHSLS---SSPVVAIKFYVRMILSGFVPNTYTFPFILK 138
            +        P +  + N +IR H+ S   S  + A  F+  M+    VPN +TFPF+LK
Sbjct: 75  LVTALLRPSVPLDAFLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLK 134

Query: 139 SCAKISAISE-GKQIHAHVLKLGLESDPFVHTSLINMYA--QNGELESARLVFNKSSLRD 195
           +CA +    + G Q HA  LK G  +D +V  +LI+MY+    G L  AR VF++     
Sbjct: 135 ACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKES 194

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
           AV+++A+I GY   G   DA  LF EM  +      +E TV+ VL+A   +G+LEL  WV
Sbjct: 195 AVTWSAMIGGYVRGGLSSDAVDLFREM--QANGVQADEVTVIGVLAAATDLGALELARWV 252

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
              +E  G+G ++ + NALID  +KCGD+  A  +FE +++R V+SW  +I         
Sbjct: 253 RRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRG 312

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
           KEA+ +F +M  + + P+DV F+ VL AC++ G +D G      +   +     +  +  
Sbjct: 313 KEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGC 372

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGE 430
           ++DM+ + G ++ A +    M  +     W +++S    HG+ +   S+   ++ E
Sbjct: 373 MVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHE 428


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 252/663 (38%), Positives = 396/663 (59%), Gaps = 12/663 (1%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSL 107
           QVH+ ++K GL  T    + LI +      G++  A ++F+     + V WN++I G++ 
Sbjct: 215 QVHTVVVKNGLDKTIPVSNSLINL--YLKCGNVRKARILFDKTEVKSVVTWNSMISGYAA 272

Query: 108 SSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFV 167
           +   + A+  +  M L+    +  +F  ++K CA +  +   +Q+H  V+K G   D  +
Sbjct: 273 NGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNI 332

Query: 168 HTSLINMYAQ-NGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
            T+L+  Y++    L++ RL      + + VS+TA+I+G+      ++A  LF EM  + 
Sbjct: 333 RTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEM--KR 390

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           +   PNE T   +L+A   +   E+   V           +  V  AL+D Y K G + +
Sbjct: 391 KGVRPNEFTYSVILTALPVISPSEVHAQVVKT----NYERSSTVGTALLDAYVKLGKVEE 446

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A  +F  I+ +D+++W+ M+ GY  T + + A+ +F ++ +  I+PN+ TF S+L  CA 
Sbjct: 447 AAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAA 506

Query: 347 LGA-LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
             A +  GK  H +  K+    +++ + ++L+ MYAK GNI++AE+VF     K L SWN
Sbjct: 507 TNASMGQGKQFHGFAIKSRLD-SSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWN 565

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
           +MISG A HG+A KAL +F  M    ++ D +TF+GV +AC HAGL++ G +YF+ M++D
Sbjct: 566 SMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRD 625

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
            KI+P  +H  CMVDL  RAG  ++A  +++ M     + IW ++L ACRVH + ELG  
Sbjct: 626 CKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRL 685

Query: 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVH 585
            A+ ++ ++PE+  AYVLLSNMYA +G W + A +R  +N++ +KK PG S IEV +  +
Sbjct: 686 AAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTY 745

Query: 586 EFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAI 645
            FL GD+ HP    IY  L+++   L+  G+ PDTS VL D+D+E KE  L+ HSE+LAI
Sbjct: 746 SFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAI 805

Query: 646 AYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHF-KDGNCSCN 704
           A+GLI+T  G+ + I+KNLRVCG+CH   KLI+KI  REI+ RD NRFHHF  DG CSC 
Sbjct: 806 AFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCG 865

Query: 705 DYW 707
           D+W
Sbjct: 866 DFW 868



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 137/479 (28%), Positives = 250/479 (52%), Gaps = 21/479 (4%)

Query: 47  KQVHSQIIKTG-LHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           +Q+H Q IK G L +     S +      S F D      VF+ ++E N V W  +I G+
Sbjct: 113 RQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKD---GRKVFDEMKERNVVTWTTLISGY 169

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
           + +S     +  ++RM   G  PN++TF   L   A+      G Q+H  V+K GL+   
Sbjct: 170 ARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTI 229

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
            V  SLIN+Y + G +  AR++F+K+ ++  V++ ++I+GYA+ G   +A  +F  M + 
Sbjct: 230 PVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRL- 288

Query: 226 EENFVP-NESTVVTVLSACAHMGSLELGNWV-CSLIEGHGLGSNLHVTNALIDMYSKCGD 283
             N+V  +ES+  +V+  CA++  L     + CS+++ +G   + ++  AL+  YSKC  
Sbjct: 289 --NYVRLSESSFASVIKLCANLKELRFTEQLHCSVVK-YGFLFDQNIRTALMVAYSKCTA 345

Query: 284 LVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
           ++ A  LF+ I    +V+SW  MI G+      +EA+ LF +M +  + PN+ T+  +L 
Sbjct: 346 MLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILT 405

Query: 343 ACAYLGALDLGKWIHAYIDK-NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
           A   +   +    +HA + K N+++ + V   T+L+D Y K G ++ A +VF G+  K +
Sbjct: 406 ALPVISPSE----VHAQVVKTNYERSSTVG--TALLDAYVKLGKVEEAAKVFSGIDDKDI 459

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL-LDIGRQYFN 460
            +W+AM++G A  G+ + A+ +F  +   G++P++ TF  +L+ C      +  G+Q+  
Sbjct: 460 VAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHG 519

Query: 461 AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
             I+  ++   L     ++ +  + G  + AE + K    K D   W S++     HG+
Sbjct: 520 FAIKS-RLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREK-DLVSWNSMISGYAQHGQ 576



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/423 (28%), Positives = 209/423 (49%), Gaps = 10/423 (2%)

Query: 100 NIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKL 159
           +++ G S       A + ++ +   G   +   F  +LK  A +     G+Q+H   +K 
Sbjct: 63  SLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKF 122

Query: 160 GLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLF 219
           G   D  V TSL++ Y +    +  R VF++   R+ V++T LI+GYA     D+   LF
Sbjct: 123 GFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLF 182

Query: 220 DEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYS 279
             M ++ E   PN  T    L   A  G    G  V +++  +GL   + V+N+LI++Y 
Sbjct: 183 --MRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYL 240

Query: 280 KCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS 339
           KCG++ KAR LF+  E + V++WN MI GY       EAL +F  M  + +  ++ +F S
Sbjct: 241 KCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFAS 300

Query: 340 VLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG-Y 398
           V+  CA L  L   + +H  + K +  L + ++ T+L+  Y+KC  +  A ++F  +G  
Sbjct: 301 VIKLCANLKELRFTEQLHCSVVK-YGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCV 359

Query: 399 KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQY 458
             + SW AMISG   +   ++A+ LFS M  +G++P++ T+  +L+A       ++  Q 
Sbjct: 360 GNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQV 419

Query: 459 FNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
                 +Y+ S  +     ++D   + G  +EA  +   ++ K D   W+++L      G
Sbjct: 420 VKT---NYERSSTVGT--ALLDAYVKLGKVEEAAKVFSGIDDK-DIVAWSAMLAGYAQTG 473

Query: 519 RLE 521
             E
Sbjct: 474 ETE 476



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 145/292 (49%), Gaps = 10/292 (3%)

Query: 179 GELESARL-----VFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
           G + S+RL     +F+KS  RD  SY +L+ G++  G   +A++LF  + I       + 
Sbjct: 36  GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLF--LNIHRLGMEMDC 93

Query: 234 STVVTVLSACAHMGSLELGNWV-CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFE 292
           S   +VL   A +     G  + C  I+  G   ++ V  +L+D Y K  +    R +F+
Sbjct: 94  SIFSSVLKVSATLCDELFGRQLHCQCIK-FGFLDDVSVGTSLVDTYMKGSNFKDGRKVFD 152

Query: 293 SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL 352
            +++R+V++W  +I GY   S   E L LF +M     +PN  TF + L   A  G    
Sbjct: 153 EMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGR 212

Query: 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLA 412
           G  +H  + KN      + +  SLI++Y KCGN++ A  +FD    K++ +WN+MISG A
Sbjct: 213 GLQVHTVVVKNGLD-KTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYA 271

Query: 413 MHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
            +G   +AL +F  M    ++  + +F  V+  C +   L    Q   ++++
Sbjct: 272 ANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVK 323


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 265/663 (39%), Positives = 397/663 (59%), Gaps = 13/663 (1%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEICAVSPF-GDLSYALLVFETIREPNQVIWNNIIRGHS 106
           QVH+ I+K G   T F  + LI +   S   GD   A  VF+++   + V WN +I G++
Sbjct: 226 QVHAMIVKNGFEFTTFVCNALICMYLKSEMVGD---AEAVFDSMVVRDSVTWNIMIGGYA 282

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
                +   + + RM L+G   +   F   LK C++   ++  KQ+H  V+K G E    
Sbjct: 283 AIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQD 342

Query: 167 VHTSLINMYAQNGELESARLVFNKS-SLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           + T+L+  Y++   ++ A  +F+ + +  + V++TA+I G+        A  LF +M   
Sbjct: 343 IRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMS-- 400

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
            E   PN  T  TVL   A   S  L      +I+ +       V  AL+D Y K G++V
Sbjct: 401 REGVRPNHFTYSTVL---AGKPSSLLSQLHAQIIKAY-YEKVPSVATALLDAYVKTGNVV 456

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
           ++  +F SI  +D+++W+ M+ G   T D ++A+ +F Q+++  ++PN+ TF SV+ AC+
Sbjct: 457 ESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACS 516

Query: 346 YLGA-LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
              A ++ GK IHA   K+  K N + + ++L+ MY+K GNI++AE+VF     + + SW
Sbjct: 517 SSAATVEHGKQIHATAVKS-GKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSW 575

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
           N+MI+G   HG A KAL +F  M  +GL  DD+TF+GVL+AC HAGL++ G +YFN MI+
Sbjct: 576 NSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIK 635

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGE 524
           DY I  K +HY CMVDL  RAG+FD+A  ++  M       IW +LL ACRVH  LELG+
Sbjct: 636 DYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGK 695

Query: 525 SVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVV 584
             A+ L+ L+P +   YVLLSN++A AG W++ A +R  ++++ +KK  GCS IE+ + +
Sbjct: 696 LAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRI 755

Query: 585 HEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLA 644
             FL GD  HP S  +Y  L+E+   L+  G+ PDT+ V +D++EE KE  LS HSE+LA
Sbjct: 756 FSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSERLA 815

Query: 645 IAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCN 704
           IAYGLI+  PG  I+I KNLR+CG+CH+  +LIS I  R +I RD NRFHHFK G CSC 
Sbjct: 816 IAYGLIALPPGAPIQIEKNLRICGDCHNVIELISLIEERTLIVRDSNRFHHFKGGVCSCG 875

Query: 705 DYW 707
            YW
Sbjct: 876 GYW 878



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 132/475 (27%), Positives = 239/475 (50%), Gaps = 15/475 (3%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +QVH Q +K+G        + L+++   +   D      +F+ +   N V W +++ G++
Sbjct: 124 RQVHCQSLKSGFLEDVSVGTSLVDMYMKTE--DFEDGRGIFDEMGIKNVVSWTSLLSGYA 181

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +      I    +M + G  PN +TF  +L + A  S I  G Q+HA ++K G E   F
Sbjct: 182 RNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTF 241

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V  +LI MY ++  +  A  VF+   +RD+V++  +I GYA+ G+  +  Q+F  M  R 
Sbjct: 242 VCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRM--RL 299

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
                + +   T L  C+    L     +   +  +G      +  AL+  YSKC  + +
Sbjct: 300 AGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDE 359

Query: 287 ARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
           A  LF   +   +V++W  MIGG+   ++ K+A+ LF QM +  + PN  T+ +VL    
Sbjct: 360 AFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAG-- 417

Query: 346 YLGALDLGKWIHAYIDKN-HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
                 L   +HA I K  ++K+ +V+  T+L+D Y K GN+  + +VF  +  K + +W
Sbjct: 418 --KPSSLLSQLHAQIIKAYYEKVPSVA--TALLDAYVKTGNVVESARVFYSIPAKDIVAW 473

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC-NHAGLLDIGRQYFNAMI 463
           +AM++GLA    ++KA+ +F +++ EG++P++ TF  V++AC + A  ++ G+Q     +
Sbjct: 474 SAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAV 533

Query: 464 QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           +  K S  L     ++ +  + G  + AE +    E + D   W S++     HG
Sbjct: 534 KSGK-SNALCVSSALLTMYSKKGNIESAEKVFTRQEER-DIVSWNSMITGYGQHG 586



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 120/431 (27%), Positives = 208/431 (48%), Gaps = 10/431 (2%)

Query: 82  YALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCA 141
           YA  +F+     +   +N ++   S ++    A+  +  +  SG   +  T    LK C 
Sbjct: 56  YAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCG 115

Query: 142 KISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTA 201
            +     G+Q+H   LK G   D  V TSL++MY +  + E  R +F++  +++ VS+T+
Sbjct: 116 VLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTS 175

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
           L++GYA  G  D+   L ++M +   N  PN  T  TVL A A    +E G  V ++I  
Sbjct: 176 LLSGYARNGLNDEVIHLINQMQMEGVN--PNGFTFATVLGALADESIIEGGVQVHAMIVK 233

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALML 321
           +G      V NALI MY K   +  A  +F+S+  RD ++WN+MIGGY     Y E   +
Sbjct: 234 NGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQM 293

Query: 322 FRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381
           F +M  + ++ +   F + L  C+    L+  K +H  + KN  +     + T+L+  Y+
Sbjct: 294 FHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQ-DIRTALMVTYS 352

Query: 382 KCGNIKAAEQVFD-GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFV 440
           KC ++  A ++F        + +W AMI G   +    KA+ LF +M  EG++P+  T+ 
Sbjct: 353 KCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYS 412

Query: 441 GVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEM 500
            VL+    + L  +  Q   A    Y+  P +     ++D   + G   E+  +  ++  
Sbjct: 413 TVLAGKPSSLLSQLHAQIIKAY---YEKVPSVA--TALLDAYVKTGNVVESARVFYSIPA 467

Query: 501 KPDAAIWTSLL 511
           K D   W+++L
Sbjct: 468 K-DIVAWSAML 477



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 120/229 (52%), Gaps = 7/229 (3%)

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A  LF+    +D+  +N ++  ++  +  +EAL LF+ +  S +  + +T    L  C  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
           L    +G+ +H    K+   L +VS+ TSL+DMY K  + +    +FD MG K + SW +
Sbjct: 117 LFDQVVGRQVHCQSLKS-GFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTS 175

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
           ++SG A +G  D+ + L ++M  EG+ P+  TF  VL A     +++ G Q  +AMI   
Sbjct: 176 LLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQ-VHAMI--V 232

Query: 467 KISPKLQHYGC--MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
           K   +   + C  ++ +  ++ +  +AEA+  +M ++ D+  W  ++G 
Sbjct: 233 KNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVR-DSVTWNIMIGG 280



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 88/218 (40%), Gaps = 37/218 (16%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           A  S    +++ KQ+H+  +K+G  N     S L+ +   S  G++  A  VF    E +
Sbjct: 514 ACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTM--YSKKGNIESAEKVFTRQEERD 571

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
            V WN++I G+        A++ +  M   G   +  TF  +L +C     + EG++   
Sbjct: 572 IVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEK--- 628

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
                             N+  ++  ++           +    Y+ ++  Y+  G  D 
Sbjct: 629 ----------------YFNIMIKDYHID-----------KKXEHYSCMVDLYSRAGMFDK 661

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
           A  + + MP     F  + +   T+L+AC    +LELG
Sbjct: 662 AMDIINGMP-----FPASPTIWRTLLAACRVHRNLELG 694


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 265/733 (36%), Positives = 417/733 (56%), Gaps = 69/733 (9%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           ++ S+  N  +++Q+H+QII   LH+  + ++ LI  C         Y  L+F +   PN
Sbjct: 6   SIASRVGNFNHLRQLHAQIIHNSLHHHNYWVALLINHC-TRLRAPPHYTHLLFNSTLNPN 64

Query: 95  QVIWNNIIRGHS------------------------------LSSSPVVAIKFYVRMILS 124
             ++ +++R +S                              + S+    I F+  ++  
Sbjct: 65  VFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGTGGIGFHAHVLKL 124

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHV---------------------------- 156
           G   + +    ++   A++  I   +++   +                            
Sbjct: 125 GHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQW 184

Query: 157 -LKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDA 215
              +  E +    T+++  YA+  +LE+AR  F+    R  VS+ A+++GYA  G  ++A
Sbjct: 185 LFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEA 244

Query: 216 RQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALI 275
            +LFDEM        P+E+T VTV+SAC+  G   L   +   +    +  N  V  AL+
Sbjct: 245 LRLFDEMV--NAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALL 302

Query: 276 DMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN-IEPND 334
           DMY+K GDL  AR LF ++  R+V++WN MI GY        A+ LF++M+ +  + P++
Sbjct: 303 DMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDE 362

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           VT +SV+ AC +LGAL+LG W+  ++ +N  KL+ +S   ++I MY++CG+++ A++VF 
Sbjct: 363 VTMVSVISACGHLGALELGNWVVRFLTENQIKLS-ISGHNAMIFMYSRCGSMEDAKRVFQ 421

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
            M  + + S+N +ISG A HG   +A++L S M   G++PD +TF+GVL+AC+HAGLL+ 
Sbjct: 422 EMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEE 481

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
           GR+ F + I+D    P + HY CMVDLLGR G  ++A+  ++ M M+P A ++ SLL A 
Sbjct: 482 GRKVFES-IKD----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNAS 536

Query: 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPG 574
           R+H ++ELGE  A  L ELEP+N G ++LLSN+YA AGRW DV  IR  +   G+KK  G
Sbjct: 537 RIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTG 596

Query: 575 CSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEG 634
            S +E G  +H+F+V D+ H +S  IY++L E+   + ++G++ D S VL D++EE KE 
Sbjct: 597 WSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEE 656

Query: 635 ALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFH 694
            +  HSEKLAI Y L+ ++ G  IR+VKNLRVC +CH+A K+ISK+  R II RD NRFH
Sbjct: 657 IVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFH 716

Query: 695 HFKDGNCSCNDYW 707
            F DG CSC DYW
Sbjct: 717 CFNDGLCSCKDYW 729


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 248/652 (38%), Positives = 378/652 (57%), Gaps = 31/652 (4%)

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKIS 144
           +F ++ E + V +N +I G S + SP  +++ Y  ++    V P   T   ++   + +S
Sbjct: 101 LFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALS 160

Query: 145 AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
             + G  +H  VL+LG  +  FV + L++MYA+ G +  AR VF +   +  V Y  LIT
Sbjct: 161 DRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLIT 220

Query: 205 GYASRGYLDDARQLFDEM-----------------------------PIREENFVPNEST 235
           G      ++DA+ LF  M                              +R E    ++ T
Sbjct: 221 GLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYT 280

Query: 236 VVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE 295
             ++L+AC  + +LE G  + + I       N+ V +AL+DMYSKC  +  A  +F  + 
Sbjct: 281 FGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMT 340

Query: 296 KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKW 355
            R++ISW  MI GY   +  +EA+  F +M    I+P+D T  SV+ +CA L +L+ G  
Sbjct: 341 CRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQ 400

Query: 356 IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHG 415
            H  +      +  +++  +L+ +Y KCG+I+ A ++FD M +    SW A+++G A  G
Sbjct: 401 FHC-LALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFG 459

Query: 416 KADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY 475
           KA + + LF +M+  GL+PD +TF+GVLSAC+ AGL++ G  YF++M +D+ I P   HY
Sbjct: 460 KAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHY 519

Query: 476 GCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEP 535
            CM+DL  R+G F EAE  +K M   PDA  W +LL +CR+ G +E+G+  A++LLE +P
Sbjct: 520 TCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDP 579

Query: 536 ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHP 595
           +NP +YVLL +M+A  G+W +VA +R  + D+ +KK PGCS I+  + VH F   D+ HP
Sbjct: 580 QNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHP 639

Query: 596 QSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPG 655
            S  IYE L+ +++ + + G+ PD S VL+D+ +  K   +SHHSEKLAIA+GLI     
Sbjct: 640 FSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFVPQE 699

Query: 656 TTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
             IRIVKNLRVC +CH+ATK ISKI  R+I+ RD  RFH F DG CSC D+W
Sbjct: 700 MPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/423 (30%), Positives = 204/423 (48%), Gaps = 67/423 (15%)

Query: 152 IHAHVLKLGLESDP-FVHTSLINMYAQNGELESARLVFNK-------------SSL---- 193
           +H  +LK  L++ P F+   L+  YA++G L  AR VF++             S+L    
Sbjct: 34  VHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSR 93

Query: 194 --------------RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTV 239
                         RDAVSY ALITG++S G    + QL+  + +REE+  P   T+  +
Sbjct: 94  LVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRAL-LREESVRPTRITLSAM 152

Query: 240 LSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE---- 295
           +   + +    LG+ V   +   G G+   V + L+DMY+K G +  AR +F+ +E    
Sbjct: 153 IMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTV 212

Query: 296 ---------------------------KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
                                       RD I+W  M+ G T      EAL +FR+M   
Sbjct: 213 VMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAE 272

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            +  +  TF S+L AC  L AL+ GK IHAYI +   + +NV + ++L+DMY+KC +I+ 
Sbjct: 273 GVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYE-DNVFVGSALVDMYSKCRSIRL 331

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           AE VF  M  + + SW AMI G   +  +++A+  FS M  +G++PDD T   V+S+C +
Sbjct: 332 AEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCAN 391

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
              L+ G Q F+ +     +   +     +V L G+ G  ++A  L   M    D   WT
Sbjct: 392 LASLEEGAQ-FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWT 449

Query: 509 SLL 511
           +L+
Sbjct: 450 ALV 452


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 262/678 (38%), Positives = 391/678 (57%), Gaps = 10/678 (1%)

Query: 35  ALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ++L+ CT + ++++   V  +  + G        + LI + A    G L  A  VF ++ 
Sbjct: 73  SVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFA--KCGCLEEAESVFRSMG 130

Query: 92  EPNQVI-WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
               +I    +I  +       +A+  Y +M   G  P+ +T+  IL +C+    + +GK
Sbjct: 131 AMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGACSSPDFLLDGK 190

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            IH H+L+     +  V  +LI MYA+ G L+ ++ +F    ++D VS+ A+I  Y   G
Sbjct: 191 HIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYG 250

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
           +  DA  LF  M        P+  T  ++L ACA    LE G  +   I   G   +  +
Sbjct: 251 HDKDAFSLFHRMCTL--GHTPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAM 308

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            N LI M+++CG L  AR  F SIEK+++ +WN M+  Y      K+AL L++ ML    
Sbjct: 309 QNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGF 368

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
            P+  TF SV+ +CA LGAL  GK+IH     +     +V L T+L++MYAKCG++  A+
Sbjct: 369 TPDRFTFSSVVDSCASLGALREGKFIHE-CSTSCGFEKDVILGTALVNMYAKCGSLADAK 427

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           + FDG+  K + SW+AMI+  A HG A++AL L   M  +G+  +++T   VL AC+H G
Sbjct: 428 KSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHACSHGG 487

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
            L  G  YF  + QD+ I    ++    +DLLGRAG   EAE +L TM  K       +L
Sbjct: 488 RLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFKVSFVALVTL 547

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           LG C+VHG +  G+++ K ++ LEPENPG+YVLL+NMYA AGRWDDVA +R  +  KG+K
Sbjct: 548 LGGCKVHGDVRRGKALTKRIVALEPENPGSYVLLNNMYAAAGRWDDVAKLRRYMRKKGVK 607

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEI-DALLEKSGFVPDTSEVLYDMDE 629
           +  GCSSIE    ++EF VGD  +P++  I   L+ +   + E+ G+VPDT +V +D+ +
Sbjct: 608 RQTGCSSIEYRDKIYEFSVGDTSNPRNLEIRAELERLYSRMKEEEGYVPDTRDVFHDVSD 667

Query: 630 EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
           + KE  L  HSEK+A+ +GLI++ PG+T+RI+KNLRVC +CH+  KL SKI  R II RD
Sbjct: 668 DKKEELLKFHSEKMAMGFGLITSPPGSTLRIIKNLRVCSDCHTVGKLASKITGRRIIVRD 727

Query: 690 RNRFHHFKDGNCSCNDYW 707
             RFHHF+ G CSC DYW
Sbjct: 728 GTRFHHFEGGICSCGDYW 745



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 138/459 (30%), Positives = 227/459 (49%), Gaps = 19/459 (4%)

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           A  VF+ I++ N   W+ ++  +  ++    A++ Y  M+      + YT   +L +C K
Sbjct: 21  ARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVRKEISIDAYTLSSVLAACTK 80

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK-SSLRDAVSYTA 201
           +  + EG+ +     +LG E D  V TSLI+++A+ G LE A  VF    ++RD +S TA
Sbjct: 81  LLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTA 140

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS-LIE 260
           +I  Y   G  D A   + +M  R +   P+  T   +L AC+    L  G  +   ++E
Sbjct: 141 MIGAYVRHGKNDLALDTYWKM--RSQGLEPDAFTYAAILGACSSPDFLLDGKHIHKHILE 198

Query: 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALM 320
               G N+ V NALI MY+KCG L  ++ LF +++ +DV+SWN MI  YT     K+A  
Sbjct: 199 SKHFG-NISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFS 257

Query: 321 LFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI-----DKNHQKLNNVSLWTS 375
           LF +M      P+  TF S+L ACA    L+ G+ +H  I     D++    NN      
Sbjct: 258 LFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNN------ 311

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           LI M+ +CG++++A + F  +  K L +WN M++  A   K   AL L+  M+ EG  PD
Sbjct: 312 LISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPD 371

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
             TF  V+ +C   G L  G+ + +           +     +V++  + G   +A+   
Sbjct: 372 RFTFSSVVDSCASLGALREGK-FIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSF 430

Query: 496 KTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534
             +  K D   W++++ A   HG  E    ++ HL+ L+
Sbjct: 431 DGISNK-DVVSWSAMIAASAQHGHAEEALELS-HLMNLQ 467



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 178/351 (50%), Gaps = 6/351 (1%)

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
           D F+   +I MY +    E AR VF++   R+A S++ L+  Y       +A +++ EM 
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEM- 59

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
           +R+E  + +  T+ +VL+AC  +  +E G  V    E  G   ++ V  +LI +++KCG 
Sbjct: 60  VRKEISI-DAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGC 118

Query: 284 LVKARDLFESI-EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
           L +A  +F S+   RD+IS   MIG Y        AL  + +M    +EP+  T+ ++L 
Sbjct: 119 LEEAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILG 178

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           AC+    L  GK IH +I ++ +   N+S+  +LI MYAKCG++K ++ +F  M  K + 
Sbjct: 179 ACSSPDFLLDGKHIHKHILES-KHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVV 237

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           SWNAMI+   ++G    A SLF RM   G  PD  TF  +L AC     L+ GR   +  
Sbjct: 238 SWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRM-LHVR 296

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
           I              ++ +  R G  + A     ++E K +   W ++L A
Sbjct: 297 ITARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIE-KKELGAWNTMLAA 346



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 159/314 (50%), Gaps = 25/314 (7%)

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           + N +I MY KC     AR +F+ I++R+  SW++++  Y   + Y+EAL ++++M++  
Sbjct: 4   LANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVRKE 63

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL---NNVSLWTSLIDMYAKCGNI 386
           I  +  T  SVL AC  L  ++ G+ +     +  ++L    +V + TSLI ++AKCG +
Sbjct: 64  ISIDAYTLSSVLAACTKLLDVEEGRMVQ----RKAEELGFEKDVVVATSLIHLFAKCGCL 119

Query: 387 KAAEQVFDGMG-YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           + AE VF  MG  + + S  AMI     HGK D AL  + +M  +GL+PD  T+  +L A
Sbjct: 120 EEAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGA 179

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYG------CMVDLLGRAGLFDEAEALLKTME 499
           C+    L  G+     +++        +H+G       ++ +  + G   ++++L  TM+
Sbjct: 180 CSSPDFLLDGKHIHKHILES-------KHFGNISVRNALITMYAKCGSLKDSKSLFLTMD 232

Query: 500 MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG--RWDDV 557
           +K D   W +++ A  ++G  +   S+   +  L    P  Y   S + A A   R +D 
Sbjct: 233 VK-DVVSWNAMIAAYTLYGHDKDAFSLFHRMCTL-GHTPDIYTFSSILGACASPKRLEDG 290

Query: 558 ATIRTRLNDKGMKK 571
             +  R+  +G  +
Sbjct: 291 RMLHVRITARGFDR 304


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 236/544 (43%), Positives = 340/544 (62%), Gaps = 11/544 (2%)

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
           D     ++I+ YAQ G L  AR +F++S  RD  ++TA+++GY   G LD+A+  FDEMP
Sbjct: 234 DAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP 293

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
            +      NE +   +++       +++      L E      N+   N +I  Y + GD
Sbjct: 294 EK------NEVSYNAMIAGYVQTKKMDIAR---ELFESMPC-RNISSWNTMITGYGQIGD 343

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           + +AR  F+ + +RD +SW  +I GY  +  Y+EAL +F ++ Q     N  TF   L  
Sbjct: 344 IAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALST 403

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
           CA + AL+LGK IH    K         +  +L+ MY KCG+I  A   F+G+  K + S
Sbjct: 404 CADIAALELGKQIHGQAVKMGYG-TGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVS 462

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
           WN M++G A HG   +AL++F  M   G++PD+IT VGVLSAC+H GLLD G +YF +M 
Sbjct: 463 WNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMT 522

Query: 464 QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELG 523
           +DY + P  +HY CM+DLLGRAG  +EA+ L++ M  +P AA W +LLGA R+HG  ELG
Sbjct: 523 KDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELG 582

Query: 524 ESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSV 583
           E  A+ + ++EP+N G YVLLSN+YA +GRW D   +R+++ D G++KVPG S +EV + 
Sbjct: 583 EKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNK 642

Query: 584 VHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKL 643
           +H F VGD  HP+ + IY  L+E+D  + + G+V  T  VL+D++EE KE  L +HSEKL
Sbjct: 643 IHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKL 702

Query: 644 AIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSC 703
           A+A+G+++   G  IR++KNLRVC +CHSA K ISKI  R II RD +RFHHF +G CSC
Sbjct: 703 AVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSC 762

Query: 704 NDYW 707
            DYW
Sbjct: 763 GDYW 766



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 175/390 (44%), Gaps = 56/390 (14%)

Query: 162 ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDE 221
           E D F    ++  Y +N  L  AR +F+    +D VS+ +L++GYA  GY+D+AR++FD 
Sbjct: 108 ERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDN 167

Query: 222 MPIREENFVPNESTVVTVLSACAHMGSLE-------------LGNWVC---------SLI 259
           MP +      N  +   +L+A  H G +E             L +W C          L 
Sbjct: 168 MPEK------NSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLG 221

Query: 260 EGHGLGSNLHVT-----NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           +   L   + V      N +I  Y++ G L +AR LF+    RDV +W  M+ GY     
Sbjct: 222 DARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGM 281

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
             EA   F +M     E N+V++ +++        +D+ + +   +        N+S W 
Sbjct: 282 LDEAKTFFDEM----PEKNEVSYNAMIAGYVQTKKMDIARELFESM-----PCRNISSWN 332

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
           ++I  Y + G+I  A + FD M  +   SW A+I+G A  G  ++AL++F  +  +G   
Sbjct: 333 TMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESL 392

Query: 435 DDITFVGVLSACNHAGLLDIGRQ-YFNAMIQDYKISPKLQHYGCMVD-----LLGRAGLF 488
           +  TF   LS C     L++G+Q +  A+   Y         GC V      +  + G  
Sbjct: 393 NRATFGCALSTCADIAALELGKQIHGQAVKMGYGT-------GCFVGNALLAMYFKCGSI 445

Query: 489 DEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           DEA    + +E K D   W ++L     HG
Sbjct: 446 DEANDTFEGIEEK-DVVSWNTMLAGYARHG 474



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 125/261 (47%), Gaps = 57/261 (21%)

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
           + GLLD G +YF  M ++Y ++P  +HY CM+DLLGR    +E                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEEG---------------- 819

Query: 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
            +LLGA R+HG  ELGE  A+   ++ P+N G                      +++ D 
Sbjct: 820 -ALLGASRIHGNTELGEKAAQMFFKMGPQNSGI---------------------SKMRDV 857

Query: 568 GMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
           G++KVPG S  EV + +H F VG  +  + ++I   L+E+D  + +     + +      
Sbjct: 858 GVQKVPGYSWFEVQNKIHTFSVGLFLSRERENI-GFLEELDLKMREREEEKERT------ 910

Query: 628 DEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIV-KNLRVCGNCHSATKLISKIFNREII 686
                   L + SE LA A G+++   G   R++ K + VC +C SA K +SKI  R I 
Sbjct: 911 --------LKYLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLIT 962

Query: 687 ARDRNRFHHFKDGNCSCNDYW 707
            RD    H F +  CSC +YW
Sbjct: 963 LRDS---HRFNESICSCGEYW 980



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 153/309 (49%), Gaps = 22/309 (7%)

Query: 71  ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNT 130
           I      GD++ A   F+ + + + V W  II G++ S     A+  +V +   G   N 
Sbjct: 335 ITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNR 394

Query: 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK 190
            TF   L +CA I+A+  GKQIH   +K+G  +  FV  +L+ MY + G ++ A   F  
Sbjct: 395 ATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEG 454

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250
              +D VS+  ++ GYA  G+   A  +F+ M  +     P+E T+V VLSAC+H G L+
Sbjct: 455 IEEKDVVSWNTMLAGYARHGFGRQALTVFESM--KTAGVKPDEITMVGVLSACSHTGLLD 512

Query: 251 LGN-WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIG- 307
            G  +  S+ + +G+         +ID+  + G L +A+DL  ++  +    SW  ++G 
Sbjct: 513 RGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGA 572

Query: 308 ----GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363
               G T   + K A M+F+      +EP + + + VL +  Y  +   G+W+ A  DK 
Sbjct: 573 SRIHGNTELGE-KAAEMVFK------MEPQN-SGMYVLLSNLYAAS---GRWVDA--DKM 619

Query: 364 HQKLNNVSL 372
             K+ ++ +
Sbjct: 620 RSKMRDIGV 628



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 125/318 (39%), Gaps = 50/318 (15%)

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N  I  + + G    A  +F ++ +R  +S+N MI GY   S +  A  LF QM + ++ 
Sbjct: 53  NKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLF 112

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
             +V     +  C    A  L        D   +K  +V  W SL+  YA+ G +  A +
Sbjct: 113 SWNVMLTGYVRNCRLGDARRL-------FDLMPEK--DVVSWNSLLSGYAQNGYVDEARE 163

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFS--------------------RMIGEG 431
           VFD M  K   SWN +++    +G+ ++A  LF                     + +G+ 
Sbjct: 164 VFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDA 223

Query: 432 LQ-------PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484
                     D I++  ++S     G L   R+ F     D   +  +  +  MV    +
Sbjct: 224 RWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLF-----DESPTRDVFTWTAMVSGYVQ 278

Query: 485 AGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEP-ENPGAYVL 543
            G+ DEA+     M  K + +    + G  +          +A+ L E  P  N  ++  
Sbjct: 279 NGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKM-----DIARELFESMPCRNISSW-- 331

Query: 544 LSNMYAGAGRWDDVATIR 561
            + M  G G+  D+A  R
Sbjct: 332 -NTMITGYGQIGDIAQAR 348



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/275 (20%), Positives = 119/275 (43%), Gaps = 24/275 (8%)

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
           ++  D++ WN  I  +        AL +F  M +     + V++ +++         +L 
Sbjct: 44  VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRR----SSVSYNAMISGYLRNSKFNLA 99

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAM 413
           + +    D+  ++  ++  W  ++  Y +   +  A ++FD M  K + SWN+++SG A 
Sbjct: 100 RNL---FDQMPER--DLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQ 154

Query: 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQ 473
           +G  D+A  +F  M     + + I++ G+L+A  H G ++        ++ + K    L 
Sbjct: 155 NGYVDEAREVFDNMP----EKNSISWNGLLAAYVHNGRIEEA-----CLLFESKSDWDLI 205

Query: 474 HYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL 533
            + C++    R     +A  L   M ++ DA  W +++      G    G S A+ L + 
Sbjct: 206 SWNCLMGGFVRKKKLGDARWLFDKMPVR-DAISWNTMISGYAQGG----GLSQARRLFDE 260

Query: 534 EP-ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
            P  +   +  + + Y   G  D+  T    + +K
Sbjct: 261 SPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK 295


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/582 (39%), Positives = 359/582 (61%), Gaps = 4/582 (0%)

Query: 126 FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR 185
             P    +   + +CA+   + + ++IH H+     E D F+  SLI++Y + G +  A 
Sbjct: 47  LAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAH 106

Query: 186 LVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH 245
            VF+K   +D VS+T+LI GYA      +A  L   M   +  F PN  T  ++L A   
Sbjct: 107 KVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGML--KGRFKPNGFTFASLLKAAGA 164

Query: 246 MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVM 305
                +G  + +L        +++V +AL+DMY++CG +  A  +F+ ++ ++ +SWN +
Sbjct: 165 YADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNAL 224

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365
           I G+    D + ALM+F +M ++  E    T+ S+    A +GAL+ GKW+HA++ K+ Q
Sbjct: 225 ISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQ 284

Query: 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
           KL    +  +++DMYAK G++  A +VF+ +  K L +WN+M++  A +G   +A+S F 
Sbjct: 285 KLTAF-VGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFE 343

Query: 426 RMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485
            M   G+  + ITF+ +L+AC+H GL+  G+ YF+ MI++Y + P+++HY  +VDLLGRA
Sbjct: 344 EMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFD-MIKEYNLEPEIEHYVTVVDLLGRA 402

Query: 486 GLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545
           GL + A   +  M M+P AA+W +LL ACR+H   ++G+  A H+ +L+P++ G  VLL 
Sbjct: 403 GLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLY 462

Query: 546 NMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLD 605
           N+YA  G WD  A +R  +   G+KK P CS +E+G+ VH F+  D  HP+++ IY+M D
Sbjct: 463 NIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYKMWD 522

Query: 606 EIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLR 665
           EI   + K G+VPD   VL  +DE+ +E  L +HSEK+A+A+ LI    G TIRI+KN+R
Sbjct: 523 EISMKIRKEGYVPDMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPAGATIRIMKNIR 582

Query: 666 VCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +CG+CHSA K ISK+F REI+ RD NRFHHF +G+CSC DYW
Sbjct: 583 ICGDCHSAFKYISKVFEREIVVRDTNRFHHFSNGSCSCGDYW 624



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/408 (28%), Positives = 205/408 (50%), Gaps = 15/408 (3%)

Query: 35  ALLSKCT---NMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           A ++ C    N+ + +++H  +  +      F  + LI +      G +  A  VF+ +R
Sbjct: 56  AFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHL--YCKCGSVVEAHKVFDKMR 113

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           + + V W ++I G++ +  P  AI     M+   F PN +TF  +LK+    +    G Q
Sbjct: 114 KKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQ 173

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IHA  +K     D +V ++L++MYA+ G+++ A  VF+K   ++ VS+ ALI+G+A +G 
Sbjct: 174 IHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGD 233

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
            + A  +F EM  +   F     T  ++ S  A +G+LE G WV + +          V 
Sbjct: 234 GETALMVFAEM--QRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVG 291

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N ++DMY+K G ++ AR +FE +  +D+++WN M+  +      KEA+  F +M +S I 
Sbjct: 292 NTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIY 351

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYID--KNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
            N +TFL +L AC++ G +  GK    Y D  K +     +  + +++D+  + G +  A
Sbjct: 352 LNQITFLCILTACSHGGLVKEGK---HYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYA 408

Query: 390 EQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
                 M  + T A W A+++   MH  A   +  F+      L PDD
Sbjct: 409 LVFIFKMPMEPTAAVWGALLAACRMHKNAK--VGQFAADHVFQLDPDD 454


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 261/637 (40%), Positives = 385/637 (60%), Gaps = 62/637 (9%)

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNG----E 180
           G  P +  FP I  +C  I  +S   QIHA  +K G   D      ++   A +     +
Sbjct: 12  GNSPASSLFPQI-NTCRTIRDLS---QIHAVFIKSGQIRDTLAAAEILRFCATSDLHHRD 67

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDD----ARQLFDEMPIREENFVPNESTV 236
           L+ A  +FN+   R+  S+  +I G++     +D    A  LF EM + +E   PN  T 
Sbjct: 68  LDYAHKIFNQMPQRNCFSWNTIIRGFSESD--EDKALIAITLFCEM-MSDEFIEPNRFTF 124

Query: 237 VTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT------------------------- 271
            +VL ACA  G ++ G  +  L   +G G +  V                          
Sbjct: 125 PSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNII 184

Query: 272 --------------------NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311
                               N +ID Y + GD   AR LF+ + +R V+SWN MI GY+ 
Sbjct: 185 EREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQ 244

Query: 312 TSDYKEALMLFRQMLQ-SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNV 370
              +K+A+ +FR+M +  +I PN VT +SVLPA + LG+L+LG+W+H Y + +  ++++V
Sbjct: 245 NGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDV 304

Query: 371 SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE 430
            L ++LIDMY+KCG I+ A  VF+ +  + + +W+AMI+G A+HG+A  A+  F +M   
Sbjct: 305 -LGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQA 363

Query: 431 GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
           G++P D+ ++ +L+AC+HAGL++ GR+YF+ M+    + P+++HYGCMVDLLGR GL DE
Sbjct: 364 GVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDE 423

Query: 491 AEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAG 550
           AE  +  M +KPD  IW +LLGACR+H  +E+G+ VA  L+++ P + GAYV LSNMYA 
Sbjct: 424 AEEFILNMPIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYAS 483

Query: 551 AGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDAL 610
            G W +V+ +R R+ +  ++K PGCS I++  V+HEFLV D  HP++K I  ML EI   
Sbjct: 484 QGNWSEVSEMRLRMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEISDK 543

Query: 611 LEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNC 670
           L  +G+ P T++VL +++EE KE AL +HSEK+A A+GLIST PG  IRIVKNLR+C +C
Sbjct: 544 LRLAGYRPITTQVLLNLEEEDKENALHYHSEKMATAFGLISTSPGKPIRIVKNLRICEDC 603

Query: 671 HSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           HS+ KLISK++ R+I  RDR RFHHF+DG+CSC DYW
Sbjct: 604 HSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 640



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 124/395 (31%), Positives = 205/395 (51%), Gaps = 56/395 (14%)

Query: 10  LSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLI 69
           ++P+   + P  + P   L  Q     ++ C  ++++ Q+H+  IK+G      A ++++
Sbjct: 1   MNPTQTLYSPGGNSPASSLFPQ-----INTCRTIRDLSQIHAVFIKSGQIRDTLAAAEIL 55

Query: 70  EICAVSPF--GDLSYALLVFETIREPNQVIWNNIIRGHSLSSS--PVVAIKFYVRMILSG 125
             CA S     DL YA  +F  + + N   WN IIRG S S     ++AI  +  M+   
Sbjct: 56  RFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDE 115

Query: 126 FV-PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYA-------- 176
           F+ PN +TFP +LK+CAK   I +GKQIH   LK G   D FV ++L+ MY         
Sbjct: 116 FIEPNRFTFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDA 175

Query: 177 -------------------------------------QNGELESARLVFNKSSLRDAVSY 199
                                                + G+ ++AR++F+K   R  VS+
Sbjct: 176 CVLFYKNIIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSW 235

Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
             +I+GY+  G+  DA ++F EM  + E+  PN  T+V+VL A + +GSLELG W+    
Sbjct: 236 NTMISGYSQNGFFKDAVEVFREMK-KGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYA 294

Query: 260 EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEAL 319
           E  G+  +  + +ALIDMYSKCG + KA  +FE + + +VI+W+ MI G+       +A+
Sbjct: 295 EDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAI 354

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGK 354
             F +M Q+ + P+DV ++++L AC++ G ++ G+
Sbjct: 355 DCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEGR 389


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 249/565 (44%), Positives = 353/565 (62%), Gaps = 6/565 (1%)

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN--GELESARLVFNKSSLRDAVSYTALI 203
           + E KQ HA +LK GL  D F  ++L+   A +  G ++ A  +F +     +  +  ++
Sbjct: 1   MEEFKQSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMM 60

Query: 204 TGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG 263
            G+      ++A   + EM   E    P+  T  T+L ACA + ++E G  V + I   G
Sbjct: 61  RGHVKDMNTEEALITYKEMA--ERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLG 118

Query: 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFR 323
           L +++ V N+LI MY KCG++     +FE + +R V SW+ +I  +     + + L L  
Sbjct: 119 LENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLG 178

Query: 324 QMLQSNI-EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
            M         +   +SVL AC +LGALDLG+ +H ++ +N   LN V + TSLI+MY K
Sbjct: 179 DMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLN-VIVETSLIEMYLK 237

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
           CG +     +F  M  K   S++ MISGLAMHG   + L +F+ M+ +GL+PDDI +VGV
Sbjct: 238 CGXLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGV 297

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
           L+AC+HAGL+  G Q FN M  ++ I P +QHYGCMVDL+GRAG  DEA  L+K+M M+P
Sbjct: 298 LNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEP 357

Query: 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562
           +  +W SLL A +VH  L+ GE  AK L +L+ +    YV+LSNMYA A RW+DVA  RT
Sbjct: 358 NDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVARTRT 417

Query: 563 RLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSE 622
            +  KG+ + PG S +EV   +H F+  D  HPQS+ +YEML +++  L+  G+ PDT++
Sbjct: 418 NMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYXPDTTQ 477

Query: 623 VLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFN 682
           VL D+DEE K+  LS HS+KLAIAY LI T  G+ +RIV+NLR+C +CH+ TKLIS IF+
Sbjct: 478 VLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPVRIVRNLRMCNDCHTYTKLISIIFD 537

Query: 683 REIIARDRNRFHHFKDGNCSCNDYW 707
           REI  RDR+RFHHFKDG CSC DYW
Sbjct: 538 REITVRDRHRFHHFKDGACSCRDYW 562



 Score =  241 bits (616), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 210/373 (56%), Gaps = 2/373 (0%)

Query: 43  MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNII 102
           M+  KQ H++I+K GL    F  S L+  CA+S +G + YA  +F  + EP    +N ++
Sbjct: 1   MEEFKQSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMM 60

Query: 103 RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE 162
           RGH    +   A+  Y  M   G  P+ +T+P +LK+CA++ A+ EG Q+HAH+LKLGLE
Sbjct: 61  RGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLE 120

Query: 163 SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
           +D FV  SLI+MY + GE+     VF + + R   S++ALIT +AS G   D  +L  +M
Sbjct: 121 NDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDM 180

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
              E  +   ES +V+VLSAC H+G+L+LG  V   +  +  G N+ V  +LI+MY KCG
Sbjct: 181 S-NEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCG 239

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
            L K   LF+ + K++ +S++VMI G       +E L +F +ML+  +EP+D+ ++ VL 
Sbjct: 240 XLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLN 299

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TL 401
           AC++ G +  G      +   H     +  +  ++D+  + G I  A ++   M  +   
Sbjct: 300 ACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPND 359

Query: 402 ASWNAMISGLAMH 414
             W +++S   +H
Sbjct: 360 VLWRSLLSASKVH 372


>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 253/574 (44%), Positives = 361/574 (62%), Gaps = 17/574 (2%)

Query: 150 KQIHAHVLKLGLESDP---FVHTSLINMYAQ--NGELESARLVFNKSSLRDAVSYTALIT 204
           KQIHA  L+    + P   F++T+++  Y+      L  A  VF+     ++  +  LI 
Sbjct: 39  KQIHAQTLRTVNSNHPNAIFLYTNILQHYSSLTQPNLTYATRVFHHFPNPNSFMWNTLIR 98

Query: 205 GYA---SRGYLDDARQLFDEM-PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE 260
            YA   +  +   A +L+  M  + E+  VP+  T   VL ACA+  SL  G  V + + 
Sbjct: 99  VYARSTNTNHKHKAMELYKTMMTMEEKTAVPDNHTFPIVLKACAYTFSLCEGKQVHAHVL 158

Query: 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALM 320
            HG  S+ ++ N+L+  Y+ CG L  A  +F  + +R+ +SWN+MI  Y     +  AL 
Sbjct: 159 KHGFESDTYICNSLVHFYATCGCLDLAEKMFYKMSERNEVSWNIMIDSYAKGGIFDTALR 218

Query: 321 LFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK--LNNVSLWTSLID 378
           +F +M Q   +P+  T  SV+ ACA LGAL LG W+HAYI K   K  +++V + T L+D
Sbjct: 219 MFGEM-QRVHDPDGYTMQSVISACAGLGALSLGLWVHAYILKKCDKNMVDDVLVNTCLVD 277

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG-EGLQPDDI 437
           MY K G ++ A+QVF+ M ++ L +WN+MI GLAMHG+A  AL+ + RM+  E + P+ I
Sbjct: 278 MYCKSGELEIAKQVFESMAFRDLNAWNSMILGLAMHGEAKAALNYYVRMVKVEKIVPNSI 337

Query: 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT 497
           TFVGVLSACNH G++D G  +F+ M ++Y + P+L+HYGC+VDL  RAG  +EA  L+  
Sbjct: 338 TFVGVLSACNHRGMVDEGIVHFDMMTKEYNVEPRLEHYGCLVDLFARAGRINEALNLVSE 397

Query: 498 MEMKPDAAIWTSLLGAC-RVHGRLELGESVAKHLLELEPE--NPGAYVLLSNMYAGAGRW 554
           M +KPDA IW SLL AC + +  +EL E +AK + E E    + G YVLLS +YA A RW
Sbjct: 398 MSIKPDAVIWRSLLDACCKQYASVELSEEMAKQVFESEGSVCSSGVYVLLSKVYASACRW 457

Query: 555 DDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKS 614
           +DV  +R  +++KG+ K PGCS IE+  VVHEF  GD  HP+S++IY+++ EI+  LE  
Sbjct: 458 NDVGLLRKLMSEKGVTKEPGCSIIEIDGVVHEFFAGDTTHPKSENIYKVVTEIEEKLESI 517

Query: 615 GFVPDTSEV-LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSA 673
           G++PD S   + D   + K   L  HSE+LAIA+G++++KP   IR+ KNLRVC +CH  
Sbjct: 518 GYLPDYSGAPMVDEVNDGKLNTLRLHSERLAIAFGILNSKPDVPIRVFKNLRVCNDCHRV 577

Query: 674 TKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           TKLIS+I+N EII RDR RFHHFKDG CSC DYW
Sbjct: 578 TKLISRIYNVEIIVRDRARFHHFKDGTCSCMDYW 611



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 133/398 (33%), Positives = 215/398 (54%), Gaps = 19/398 (4%)

Query: 29  QNQPSLALLSKCTN--MQNIKQVHSQIIKT---GLHNTQFALSKLIEICAVSPFGDLSYA 83
           Q+Q  + LL++ T   M  +KQ+H+Q ++T      N  F  + +++  +     +L+YA
Sbjct: 19  QSQHLIHLLNEPTTITMPQLKQIHAQTLRTVNSNHPNAIFLYTNILQHYSSLTQPNLTYA 78

Query: 84  LLVFETIREPNQVIWNNIIRGHSLSSSPV---VAIKFYVRMIL---SGFVPNTYTFPFIL 137
             VF     PN  +WN +IR ++ S++      A++ Y  M+       VP+ +TFP +L
Sbjct: 79  TRVFHHFPNPNSFMWNTLIRVYARSTNTNHKHKAMELYKTMMTMEEKTAVPDNHTFPIVL 138

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
           K+CA   ++ EGKQ+HAHVLK G ESD ++  SL++ YA  G L+ A  +F K S R+ V
Sbjct: 139 KACAYTFSLCEGKQVHAHVLKHGFESDTYICNSLVHFYATCGCLDLAEKMFYKMSERNEV 198

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           S+  +I  YA  G  D A ++F EM    +   P+  T+ +V+SACA +G+L LG WV +
Sbjct: 199 SWNIMIDSYAKGGIFDTALRMFGEMQRVHD---PDGYTMQSVISACAGLGALSLGLWVHA 255

Query: 258 LIE---GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
            I       +  ++ V   L+DMY K G+L  A+ +FES+  RD+ +WN MI G     +
Sbjct: 256 YILKKCDKNMVDDVLVNTCLVDMYCKSGELEIAKQVFESMAFRDLNAWNSMILGLAMHGE 315

Query: 315 YKEALMLFRQMLQ-SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
            K AL  + +M++   I PN +TF+ VL AC + G +D G      + K +     +  +
Sbjct: 316 AKAALNYYVRMVKVEKIVPNSITFVGVLSACNHRGMVDEGIVHFDMMTKEYNVEPRLEHY 375

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISG 410
             L+D++A+ G I  A  +   M  K  A  W +++  
Sbjct: 376 GCLVDLFARAGRINEALNLVSEMSIKPDAVIWRSLLDA 413


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 225/572 (39%), Positives = 362/572 (63%), Gaps = 4/572 (0%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           ++ +CA+  ++ + + IHAH+         F+  SLI++Y + G +  AR VF+    RD
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARD 129

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
             S+T+LI GYA     D+A  L   M      F PN  T  ++L A     S  +G  +
Sbjct: 130 MCSWTSLIAGYAQNDMPDEALGLLPGM--LRGRFKPNGFTFASLLKAAGASASSGIGEQI 187

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
            +L   +    +++V +AL+DMY++CG +  A  +F+ +E ++ +SWN +I G+    D 
Sbjct: 188 HALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDG 247

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
           +  L++F +M ++  E    T+ SV  A A +GAL+ GKW+HA++ K+ ++L+   +  +
Sbjct: 248 ETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAF-VGNT 306

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           ++DMYAK G++  A +VFD +  K + +WN+M++  A +G   +A++ F  M   G+  +
Sbjct: 307 ILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLN 366

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
            ITF+ +L+AC+H GL+  G+QYF+ M+++Y + P++ HY  +VDLLGRAGL ++A   +
Sbjct: 367 QITFLSILTACSHGGLVKEGKQYFD-MMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFI 425

Query: 496 KTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555
             M MKP AA+W +LLG+CR+H   ++G+  A H+ EL+P++ G  VLL N+YA  G+WD
Sbjct: 426 FKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWD 485

Query: 556 DVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSG 615
             A +R  +   G+KK P CS +E+ + VH F+  D  HP+S+ IY+  +EI   + K+G
Sbjct: 486 AAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAG 545

Query: 616 FVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATK 675
           +VP+T  VL  +DE+ ++  L +HSEK+A+A+ LI+   G TIRI+KN+R+CG+CHSA +
Sbjct: 546 YVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFR 605

Query: 676 LISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            ISK+F REI+ RD NRFHHF  G+CSC DYW
Sbjct: 606 YISKVFKREIVVRDTNRFHHFSSGSCSCGDYW 637



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/417 (28%), Positives = 213/417 (51%), Gaps = 17/417 (4%)

Query: 28  LQNQPSL--ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF---GDLSY 82
           L   P L  +L++ C   +++    ++ I   L  +QFA S  ++   +  +   G ++ 
Sbjct: 60  LAATPRLYHSLITACARYRSLDD--ARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVAD 117

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           A  VF+ +   +   W ++I G++ +  P  A+     M+   F PN +TF  +LK+   
Sbjct: 118 ARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGA 177

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
            ++   G+QIHA  +K     D +V ++L++MYA+ G ++ A  VF++   ++ VS+ AL
Sbjct: 178 SASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNAL 237

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
           I G+A +G  +    +F EM  +   F     T  +V SA A +G+LE G WV + +   
Sbjct: 238 IAGFARKGDGETTLLMFAEM--QRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKS 295

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
           G   +  V N ++DMY+K G ++ AR +F+ ++K+DV++WN M+  +      +EA+  F
Sbjct: 296 GERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHF 355

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID--KNHQKLNNVSLWTSLIDMY 380
            +M +  +  N +TFLS+L AC++ G +  GK    Y D  K +     +  + +++D+ 
Sbjct: 356 EEMRKCGVHLNQITFLSILTACSHGGLVKEGK---QYFDMMKEYNLEPEIDHYVTVVDLL 412

Query: 381 AKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
            + G +  A      M  K T A W A++    MH  A K     +  + E L PDD
Sbjct: 413 GRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNA-KIGQFAADHVFE-LDPDD 467


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 249/616 (40%), Positives = 369/616 (59%), Gaps = 19/616 (3%)

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
           WN  +R  +  S    +I  Y  M+ SG  P+ ++FPFILKSCA +S    G+Q+H HV 
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVF--NKSSLRDAVSYTALITGYASRGYLDDA 215
           K G E++PFV T+LI+MY + G +  AR VF  N  S + +V Y ALI+GY +   + DA
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140

Query: 216 RQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALI 275
             +F  M  +E     +  T++ ++  C     L LG  +       GL S + V N+ I
Sbjct: 141 AYMFRRM--KETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFI 198

Query: 276 DMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV 335
            MY KCG +   R LF+ +  + +I+WN +I GY+      + L L+ QM  S + P+  
Sbjct: 199 TMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPF 258

Query: 336 TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
           T +SVL +CA+LGA  +G  +   ++ N   + NV +  + I MYA+CGN+  A  VFD 
Sbjct: 259 TLVSVLSSCAHLGAKKIGHEVGKLVESN-GFVPNVFVSNASISMYARCGNLAKARAVFDI 317

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
           M  K+L SW AMI    MHG  +  L LF  MI  G++PD   FV VLSAC+H+GL D G
Sbjct: 318 MPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKG 377

Query: 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACR 515
            + F AM ++YK+ P  +HY C+VDLLGRAG  DEA   +++M ++PD A+W +LLGAC+
Sbjct: 378 LELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACK 437

Query: 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGC 575
           +H  +++ E     ++E EP N G YVL+SN+Y+ +   + +  IR  + ++  +K PG 
Sbjct: 438 IHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGY 497

Query: 576 SSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEID-ALLEKSGFVPDTSEVLYDMDEEWKEG 634
           S +E    VH FL GD+ H Q++ ++ MLDE++ +++E +G          +MD +  E 
Sbjct: 498 SYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELAG----------NMDCDRGEE 547

Query: 635 ALS---HHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
             S    HSE+LAIA+G++++ PGT I ++KNLRVC +CH   K +SKI +R+ + RD +
Sbjct: 548 VSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDAS 607

Query: 692 RFHHFKDGNCSCNDYW 707
           RFH+FKDG CSC DYW
Sbjct: 608 RFHYFKDGVCSCKDYW 623



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 115/402 (28%), Positives = 213/402 (52%), Gaps = 11/402 (2%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEI-CAVSPFGDLSYALLVFETIREPNQ--VIWNNIIR 103
           +Q+H  + K G     F L+ LI + C      D   A  VFE   + +Q  V +N +I 
Sbjct: 73  QQLHCHVTKGGCETEPFVLTALISMYCKCGLVAD---ARKVFEENPQSSQLSVCYNALIS 129

Query: 104 GHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLES 163
           G++ +S    A   + RM  +G   ++ T   ++  C     +  G+ +H   +K GL+S
Sbjct: 130 GYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDS 189

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
           +  V  S I MY + G +E+ R +F++  ++  +++ A+I+GY+  G   D  +L+++M 
Sbjct: 190 EVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQM- 248

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
            +     P+  T+V+VLS+CAH+G+ ++G+ V  L+E +G   N+ V+NA I MY++CG+
Sbjct: 249 -KSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGN 307

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           L KAR +F+ +  + ++SW  MIG Y      +  LMLF  M++  I P+   F+ VL A
Sbjct: 308 LAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSA 367

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLA 402
           C++ G  D G  +   + + ++       ++ L+D+  + G +  A +  + M  +   A
Sbjct: 368 CSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGA 427

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
            W A++    +H   D A   F+++I    +P++I +  ++S
Sbjct: 428 VWGALLGACKIHKNVDMAELAFAKVI--EFEPNNIGYYVLMS 467



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 145/309 (46%), Gaps = 11/309 (3%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           L L+  CT  + +   + +H Q +K GL +    L+  I +      G +     +F+ +
Sbjct: 160 LGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITM--YMKCGSVEAGRRLFDEM 217

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
                + WN +I G+S +      ++ Y +M  SG  P+ +T   +L SCA + A   G 
Sbjct: 218 PVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGH 277

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           ++   V   G   + FV  + I+MYA+ G L  AR VF+   ++  VS+TA+I  Y   G
Sbjct: 278 EVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHG 337

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLH 269
             +    LFD+M  R     P+ +  V VLSAC+H G  + G     ++   + L     
Sbjct: 338 MGEIGLMLFDDMIKR--GIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPE 395

Query: 270 VTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
             + L+D+  + G L +A +  ES+  + D   W  ++G      +   A + F ++++ 
Sbjct: 396 HYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIE- 454

Query: 329 NIEPNDVTF 337
             EPN++ +
Sbjct: 455 -FEPNNIGY 462


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 236/544 (43%), Positives = 340/544 (62%), Gaps = 11/544 (2%)

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
           D     ++I+ YAQ G L  AR +F++S  RD  ++TA+++GY   G LD+A+  FDEMP
Sbjct: 234 DAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP 293

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
            +      NE +   +++       +++      L E      N+   N +I  Y + GD
Sbjct: 294 EK------NEVSYNAMIAGYVQTKKMDIAR---ELFESMPC-RNISSWNTMITGYGQIGD 343

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           + +AR  F+ + +RD +SW  +I GY  +  Y+EAL +F ++ Q     N  TF   L  
Sbjct: 344 IAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALST 403

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
           CA + AL+LGK IH    K         +  +L+ MY KCG+I  A   F+G+  K + S
Sbjct: 404 CADIAALELGKQIHGQAVKMGYG-TGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVS 462

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
           WN M++G A HG   +AL++F  M   G++PD+IT VGVLSAC+H GLLD G +YF +M 
Sbjct: 463 WNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMT 522

Query: 464 QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELG 523
           +DY + P  +HY CM+DLLGRAG  +EA+ L++ M  +P AA W +LLGA R+HG  ELG
Sbjct: 523 KDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELG 582

Query: 524 ESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSV 583
           E  A+ + ++EP+N G YVLLSN+YA +GRW D   +R+++ D G++KVPG S +EV + 
Sbjct: 583 EKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNK 642

Query: 584 VHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKL 643
           +H F VGD  HP+ + IY  L+E+D  + + G+V  T  VL+D++EE KE  L +HSEKL
Sbjct: 643 IHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKL 702

Query: 644 AIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSC 703
           A+A+G+++   G  IR++KNLRVC +CHSA K ISKI  R II RD +RFHHF +G CSC
Sbjct: 703 AVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSC 762

Query: 704 NDYW 707
            DYW
Sbjct: 763 GDYW 766



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 175/390 (44%), Gaps = 56/390 (14%)

Query: 162 ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDE 221
           E D F    ++  Y +N  L  AR +F+    +D VS+ +L++GYA  GY+D+AR++FD 
Sbjct: 108 ERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDN 167

Query: 222 MPIREENFVPNESTVVTVLSACAHMGSLE-------------LGNWVC---------SLI 259
           MP +      N  +   +L+A  H G +E             L +W C          L 
Sbjct: 168 MPEK------NSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLG 221

Query: 260 EGHGLGSNLHVT-----NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           +   L   + V      N +I  Y++ G L +AR LF+    RDV +W  M+ GY     
Sbjct: 222 DARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGM 281

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
             EA   F +M     E N+V++ +++        +D+ + +   +        N+S W 
Sbjct: 282 LDEAKTFFDEM----PEKNEVSYNAMIAGYVQTKKMDIARELFESM-----PCRNISSWN 332

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
           ++I  Y + G+I  A + FD M  +   SW A+I+G A  G  ++AL++F  +  +G   
Sbjct: 333 TMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESL 392

Query: 435 DDITFVGVLSACNHAGLLDIGRQ-YFNAMIQDYKISPKLQHYGCMVD-----LLGRAGLF 488
           +  TF   LS C     L++G+Q +  A+   Y         GC V      +  + G  
Sbjct: 393 NRATFGCALSTCADIAALELGKQIHGQAVKMGYGT-------GCFVGNALLAMYFKCGSI 445

Query: 489 DEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           DEA    + +E K D   W ++L     HG
Sbjct: 446 DEANDTFEGIEEK-DVVSWNTMLAGYARHG 474



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 153/309 (49%), Gaps = 22/309 (7%)

Query: 71  ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNT 130
           I      GD++ A   F+ + + + V W  II G++ S     A+  +V +   G   N 
Sbjct: 335 ITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNR 394

Query: 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK 190
            TF   L +CA I+A+  GKQIH   +K+G  +  FV  +L+ MY + G ++ A   F  
Sbjct: 395 ATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEG 454

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250
              +D VS+  ++ GYA  G+   A  +F+ M  +     P+E T+V VLSAC+H G L+
Sbjct: 455 IEEKDVVSWNTMLAGYARHGFGRQALTVFESM--KTAGVKPDEITMVGVLSACSHTGLLD 512

Query: 251 LGN-WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIG- 307
            G  +  S+ + +G+         +ID+  + G L +A+DL  ++  +    SW  ++G 
Sbjct: 513 RGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGA 572

Query: 308 ----GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363
               G T   + K A M+F+      +EP + + + VL +  Y  +   G+W+ A  DK 
Sbjct: 573 SRIHGNTELGE-KAAEMVFK------MEPQN-SGMYVLLSNLYAAS---GRWVDA--DKM 619

Query: 364 HQKLNNVSL 372
             K+ ++ +
Sbjct: 620 RSKMRDIGV 628



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 125/318 (39%), Gaps = 50/318 (15%)

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N  I  + + G    A  +F ++ +R  +S+N MI GY   S +  A  LF QM + ++ 
Sbjct: 53  NKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLF 112

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
             +V     +  C    A  L        D   +K  +V  W SL+  YA+ G +  A +
Sbjct: 113 SWNVMLTGYVRNCRLGDARRL-------FDLMPEK--DVVSWNSLLSGYAQNGYVDEARE 163

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFS--------------------RMIGEG 431
           VFD M  K   SWN +++    +G+ ++A  LF                     + +G+ 
Sbjct: 164 VFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDA 223

Query: 432 LQ-------PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484
                     D I++  ++S     G L   R+ F     D   +  +  +  MV    +
Sbjct: 224 RWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLF-----DESPTRDVFTWTAMVSGYVQ 278

Query: 485 AGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEP-ENPGAYVL 543
            G+ DEA+     M  K + +    + G  +          +A+ L E  P  N  ++  
Sbjct: 279 NGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKM-----DIARELFESMPCRNISSW-- 331

Query: 544 LSNMYAGAGRWDDVATIR 561
            + M  G G+  D+A  R
Sbjct: 332 -NTMITGYGQIGDIAQAR 348



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/275 (20%), Positives = 118/275 (42%), Gaps = 24/275 (8%)

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
           ++  D++ WN  I  +        AL +F  M +     + V++ +++         +L 
Sbjct: 44  VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRR----SSVSYNAMISGYLRNSKFNLA 99

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAM 413
           + +    D+  ++  ++  W  ++  Y +   +  A ++FD M  K + SWN+++SG A 
Sbjct: 100 RNL---FDQMPER--DLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQ 154

Query: 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQ 473
           +G  D+A  +F  M     + + I++ G+L+A  H G ++     F +     K    L 
Sbjct: 155 NGYVDEAREVFDNMP----EKNSISWNGLLAAYVHNGRIEEACLLFES-----KSDWDLI 205

Query: 474 HYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL 533
            + C++    R     +A  L   M ++ DA  W +++      G    G S A+ L + 
Sbjct: 206 SWNCLMGGFVRKKKLGDARWLFDKMPVR-DAISWNTMISGYAQGG----GLSQARRLFDE 260

Query: 534 EP-ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
            P  +   +  + + Y   G  D+  T    + +K
Sbjct: 261 SPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK 295


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 241/591 (40%), Positives = 355/591 (60%), Gaps = 24/591 (4%)

Query: 37  LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQV 96
           +  C   + + Q+ +QII  G    ++   KL+ ICA      ++YA  +F+ I +PN  
Sbjct: 108 MRSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICAT--LKRMTYARQLFDQIPDPNIA 165

Query: 97  IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHV 156
           +WN++ RG++ S S    +  + +M      PN +TFP +LKSC KI+A+ EG+Q+H  +
Sbjct: 166 LWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFL 225

Query: 157 LKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDAR 216
           +K G   +PFV T+LI+MY+  G +  A  +F +   R+ V++T++I GY     L  AR
Sbjct: 226 IKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSAR 285

Query: 217 QLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL-----GSNLHVT 271
           +LFD  P R+            VL      G +E G+    ++E   L       ++   
Sbjct: 286 RLFDLAPERD-----------VVLWNIMVSGYIEGGD----MVEARKLFXEMPNRDVMFW 330

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-QSNI 330
           N ++  Y+  G++     LFE + +R++ SWN +IGGY H   + E L  F++ML +S++
Sbjct: 331 NTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDV 390

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
            PND T ++VL ACA LGALDLGKW+H Y + +  K  NV +  +L+DMYAKCG I+ A 
Sbjct: 391 PPNDATLVTVLSACARLGALDLGKWVHVYAESSGLK-GNVYVGNALMDMYAKCGIIENAI 449

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
            VF GM  K L SWN +I GLAMH +   AL+LF +M   G +PD ITF+G+L AC H G
Sbjct: 450 SVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMG 509

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L++ G  YF +M  DY I P+++HYGCMVD+L RAG  ++A A ++ M ++ D  IW  L
Sbjct: 510 LVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGL 569

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           LGACR++  +EL E   + L+ELEP+NP  YV+LSN+Y  AGRW+DVA ++  + D G K
Sbjct: 570 LGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFK 629

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTS 621
           K+PGCS IEV   V EF   D+ HPQ + IY +L  +  +L   G+VPD +
Sbjct: 630 KLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGLVKVLRSFGYVPDLT 680


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 254/668 (38%), Positives = 398/668 (59%), Gaps = 12/668 (1%)

Query: 47  KQVHSQII---KTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIR 103
           K +H+Q +   +T  H+    L+ L+ +      G L  A  +F+ +   N V WN ++ 
Sbjct: 32  KAMHAQFLIRNQTSNHSHISHLNSLVHLYV--KCGQLGLARNLFDAMPLRNVVSWNVLMA 89

Query: 104 GHSLSSSPVVAIKFYVRMI-LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE 162
           G+    + +  +  +  M+ L    PN Y F   L +C+    + EG Q H  + K GL 
Sbjct: 90  GYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLV 149

Query: 163 SDPFVHTSLINMYAQNGELESARLVFNK---SSLRDAVSYTALITGYASRGYLDDARQLF 219
              +V ++L++MY++   +E A  V +      + D  SY +++      G  ++A ++ 
Sbjct: 150 CHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVL 209

Query: 220 DEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYS 279
             M   +E    +  T V V+  CA +  L+LG  V + +   GL  +  V + LIDMY 
Sbjct: 210 RRMV--DECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYG 267

Query: 280 KCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS 339
           KCG+++ AR++F+ ++ R+V+ W  ++  Y     ++E+L LF  M +    PN+ TF  
Sbjct: 268 KCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAV 327

Query: 340 VLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK 399
           +L ACA + AL  G  +HA ++K   K N+V +  +LI+MY+K G+I ++  VF  M Y+
Sbjct: 328 LLNACAGIAALRHGDLLHARVEKLGFK-NHVIVRNALINMYSKSGSIDSSYNVFTDMIYR 386

Query: 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF 459
            + +WNAMI G + HG   +AL +F  M+     P+ +TF+GVLSA +H GL+  G  Y 
Sbjct: 387 DIITWNAMICGYSHHGLGKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYL 446

Query: 460 NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
           N +++++KI P L+HY CMV LL RAGL DEAE  +KT ++K D   W +LL AC VH  
Sbjct: 447 NHLMRNFKIEPGLEHYTCMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACHVHRN 506

Query: 520 LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIE 579
            +LG  +A+ +L+++P + G Y LLSNMYA A RWD V TIR  + ++ +KK PG S ++
Sbjct: 507 YDLGRRIAESVLQMDPHDVGTYTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPGASWLD 566

Query: 580 VGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHH 639
           + + +H FL     HP+S  IY+ + ++ AL++  G+VP+ + VL+D+++E KEG LS+H
Sbjct: 567 IRNDIHVFLSEGSNHPESIQIYKKVQQLLALIKPLGYVPNIASVLHDVEDEQKEGYLSYH 626

Query: 640 SEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDG 699
           SEKLA+AYGL+       IRI+KNLR+C +CH+A KLISK+ NR II RD NRFHHF+DG
Sbjct: 627 SEKLALAYGLMKIPSPAPIRIIKNLRMCDDCHTAVKLISKVTNRLIIVRDANRFHHFRDG 686

Query: 700 NCSCNDYW 707
           +C+C D+W
Sbjct: 687 SCTCLDHW 694



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/403 (27%), Positives = 201/403 (49%), Gaps = 10/403 (2%)

Query: 122 ILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESD--PFVH-TSLINMYAQN 178
           + S ++P+      +LK CA +  +  GK +HA  L     S+     H  SL+++Y + 
Sbjct: 4   VFSRYLPSLEELGKLLKLCADVKWLPFGKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKC 63

Query: 179 GELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVT 238
           G+L  AR +F+   LR+ VS+  L+ GY   G   +   LF  M +  +N  PNE    T
Sbjct: 64  GQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNM-VSLQNACPNEYVFTT 122

Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI---E 295
            LSAC+H G ++ G     L+   GL  + +V +AL+ MYS+C  +  A  + +++    
Sbjct: 123 ALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEH 182

Query: 296 KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKW 355
             D+ S+N ++     +   +EA+ + R+M+   +  + VT++ V+  CA +  L LG  
Sbjct: 183 VNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLR 242

Query: 356 IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHG 415
           +HA + +     +   + + LIDMY KCG +  A  VFDG+  + +  W A+++    +G
Sbjct: 243 VHARLLRGGLMFDEF-VGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNG 301

Query: 416 KADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY 475
             +++L+LF+ M  EG  P++ TF  +L+AC     L  G    +A ++       +   
Sbjct: 302 YFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHG-DLLHARVEKLGFKNHVIVR 360

Query: 476 GCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
             ++++  ++G  D +  +   M  + D   W +++     HG
Sbjct: 361 NALINMYSKSGSIDSSYNVFTDMIYR-DIITWNAMICGYSHHG 402


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 254/660 (38%), Positives = 381/660 (57%), Gaps = 6/660 (0%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           VH    K G+       + L+++   S  G L  A  +F+     N V WN II G+S  
Sbjct: 321 VHGLAFKLGITEEVTVNNSLVDM--YSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKE 378

Query: 109 SSPVVAIKFYVRMILSGFVP-NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFV 167
                  +    M     V  N  T   +L +C+    +   K+IH +  + G   D  V
Sbjct: 379 GDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELV 438

Query: 168 HTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREE 227
             + +  YA+   L+ A  VF     +   S+ ALI  +A  G+   +  LF  + + + 
Sbjct: 439 ANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLF--LVMMDS 496

Query: 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA 287
              P+  T+ ++L ACA +  L  G  +   +  +GL  +  +  +L+ +Y +C  ++  
Sbjct: 497 GMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLG 556

Query: 288 RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347
           + +F+ +E + ++ WNVMI G++      EAL  FRQML   I+P ++    VL AC+ +
Sbjct: 557 KLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQV 616

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
            AL LGK +H++  K H    +  +  +LIDMYAKCG ++ ++ +FD +  K  A WN +
Sbjct: 617 SALRLGKEVHSFALKAHLS-EDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVI 675

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           I+G  +HG   KA+ LF  M  +G +PD  TF+GVL ACNHAGL+  G +Y   M   Y 
Sbjct: 676 IAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYG 735

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
           + PKL+HY C+VD+LGRAG   EA  L+  M  +PD+ IW+SLL +CR +G LE+GE V+
Sbjct: 736 VKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVS 795

Query: 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF 587
           K LLELEP     YVLLSN+YAG G+WD+V  +R R+ + G+ K  GCS IE+G +V+ F
Sbjct: 796 KKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRF 855

Query: 588 LVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAY 647
           LV D    +SK I +   +++  + K G+ PDTS VL++++EE K   L  HSEKLAI++
Sbjct: 856 LVSDGSLSESKKIQQTWIKLEKKISKIGYKPDTSCVLHELEEEGKIKILKSHSEKLAISF 915

Query: 648 GLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           GL++T  GTT+R+ KNLR+C +CH+A KL+SK+  R+II RD  RFHHFK+G C+C D+W
Sbjct: 916 GLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKVVKRDIIVRDNKRFHHFKNGLCTCGDFW 975



 Score =  241 bits (616), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 179/573 (31%), Positives = 284/573 (49%), Gaps = 44/573 (7%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LL  C + +NI   ++VH+ +  +        LS  I I   S  G  S +  VF+  +E
Sbjct: 98  LLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRI-IAMYSACGSPSDSRGVFDAAKE 156

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMI-LSGFVPNTYTFPFILKSCAKISAISEGKQ 151
            +  ++N ++ G+S ++    AI  ++ ++  +   P+ +T P + K+CA ++ +  G+ 
Sbjct: 157 KDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEA 216

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +HA  LK G  SD FV  +LI MY + G +ESA  VF     R+ VS+ +++   +  G 
Sbjct: 217 VHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGG 276

Query: 212 LDDARQLFDEMPI-REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
             +   +F  + I  EE  VP+ +T+VTV+ ACA +G + +G  V  L    G+   + V
Sbjct: 277 FGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTV 336

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM-LQSN 329
            N+L+DMYSKCG L +AR LF+    ++V+SWN +I GY+   D++    L ++M  +  
Sbjct: 337 NNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEK 396

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           +  N+VT L+VLPAC+    L   K IH Y  + H  L +  +  + +  YAKC ++  A
Sbjct: 397 VRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFR-HGFLKDELVANAFVAAYAKCSSLDCA 455

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
           E+VF GM  KT++SWNA+I   A +G   K+L LF  M+  G+ PD  T   +L AC   
Sbjct: 456 ERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARL 515

Query: 450 GLLDIGRQYFNAMIQD-------YKISPKLQHYGCMVDLLGRAGLFDE------------ 490
             L  G++    M+++         IS    +  C   LLG+  +FD+            
Sbjct: 516 KFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKL-IFDKMENKSLVCWNVM 574

Query: 491 ----------AEALLKTMEM-----KPDAAIWTSLLGACRVHGRLELGESVAKHLLELE- 534
                      EAL    +M     KP     T +LGAC     L LG+ V    L+   
Sbjct: 575 ITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHL 634

Query: 535 PENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
            E+      L +MYA  G  +    I  R+N+K
Sbjct: 635 SEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEK 667


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 262/707 (37%), Positives = 413/707 (58%), Gaps = 31/707 (4%)

Query: 18  PPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF 77
           PP+S     +L +     LLS    +++++ +H +I+  G+    F  + L++  +    
Sbjct: 109 PPNSVTFVSVLDSCVEAGLLS----LEDVRAIHGRIVGAGIEREAFVRTALVD--SYGKL 162

Query: 78  GDLSYALLVF--ETIREPNQ--VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTF 133
           G L  A  VF  ++  EP+   V  + +I     +  P  +++ +  M L G  P+  T 
Sbjct: 163 GSLDDAWEVFLRKSDEEPSTSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTL 222

Query: 134 PFILKSCAKISAISEGKQIHAHVLKLGLE-----SDPFVHTSLINMYAQNGELESARLVF 188
             +L +C+ +   S      A VL+  +E      D  + T+L+  YA++ +L  AR  F
Sbjct: 223 VSVLNACSMLPVGSAT----AFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLSRARATF 278

Query: 189 NKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH--- 245
           +     D VS+ A+   Y       +A  LF+ M +  E   P+ +T +T L+ACA    
Sbjct: 279 DAIQSPDVVSWNAMAAAYLQHHRPREALVLFERMLL--EGVRPSVATFITALTACAAYPP 336

Query: 246 MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE--KRDVISWN 303
             +  +G  + SL+E  GL  +  V NA ++MY+KCG L  AR +FE I   +RD I+WN
Sbjct: 337 QTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPTRRDCITWN 396

Query: 304 VMIGGYTHTSDYKEALMLFRQM-LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
            M+  Y H    KEA  LF+ M  +  ++PN VTF++VL A     ++  G+ IHA +  
Sbjct: 397 SMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVS 456

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD--GMGYKTLASWNAMISGLAMHGKADKA 420
           N  + + V +  +L++MYAKCG++  A+ +FD      + + +W ++++G A +G+A++A
Sbjct: 457 NGFESDTV-IQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLVAGYAQYGQAERA 515

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
           L LF  M  +G++P+ ITF+  L+ACNH G L+ G +  + M  D+ I P  +H+ C+VD
Sbjct: 516 LKLFWTMQQQGVRPNHITFISALTACNHGGKLEQGCELLSGMTPDHGIVPASKHFSCIVD 575

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540
           LLGR G  DEAE LL+    + D   W +LL AC+    LE GE  A+ +++L+PE   +
Sbjct: 576 LLGRCGRLDEAEKLLERTS-QADVITWMALLDACKNSKELERGERCAERIMQLDPEVASS 634

Query: 541 YVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHI 600
           Y++L++MYA AGRW++ ATIR  + DKG++  PGCS++EV   +H F  GDK HP+S+ I
Sbjct: 635 YIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSAVEVNQELHSFSAGDKSHPKSEEI 694

Query: 601 YEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRI 660
           Y  L+ +   ++ +G+V DT  VL+D+ +E KE  L  HSEKLAIA+GL+ST  G+ +R+
Sbjct: 695 YLELERLHWSIKAAGYVADTGLVLHDVSQEHKERLLMRHSEKLAIAFGLMSTPSGSPLRV 754

Query: 661 VKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +KNLRVC +CH+ATKLISK+  R+I+ RD +R+HHF  G CSC DYW
Sbjct: 755 IKNLRVCSDCHTATKLISKVTGRDILMRDSSRYHHFTSGTCSCGDYW 801



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 131/486 (26%), Positives = 215/486 (44%), Gaps = 58/486 (11%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           PN +    ++ +C+ +  ++ G++IH+ +     E +  +  +LI+MY++ G L  A+  
Sbjct: 5   PNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQA 64

Query: 188 FN---KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
           F+   ++S RD V++ A+I+ +   G   +A QLF +M   +    PN  T V+VL +C 
Sbjct: 65  FDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMD-HDGAPPPNSVTFVSVLDSCV 123

Query: 245 HMG--SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD---- 298
             G  SLE    +   I G G+     V  AL+D Y K G L  A ++F  + K D    
Sbjct: 124 EAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVF--LRKSDEEPS 181

Query: 299 --VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
             +++ + MI         +E+L LF  M     +P+ VT +SVL AC+ L       ++
Sbjct: 182 TSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACSMLPVGSATAFV 241

Query: 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGK 416
                +      +  L T+L+  YA+  ++  A   FD +    + SWNAM +    H +
Sbjct: 242 LEQAMEVVSATRDNVLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHR 301

Query: 417 ADKALSLFSRMIGEGLQPDDITFVGVLSAC-------------------NHAGLLDIGRQ 457
             +AL LF RM+ EG++P   TF+  L+AC                     AG L+    
Sbjct: 302 PREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAG-LEGDTA 360

Query: 458 YFNAMIQDY--------------KISPKLQH---YGCMVDLLGRAGLFDEAEALLKTME- 499
             NA +  Y              +ISP  +    +  M+   G  GL  EA  L + ME 
Sbjct: 361 VANATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEA 420

Query: 500 ---MKPDAAIWTSLLGACRVHGRLELGESVAKHLLE--LEPENPGAYVLLSNMYAGAGRW 554
              +KP+   + ++L A      +  G  +   ++    E +      LL NMYA  G  
Sbjct: 421 EKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALL-NMYAKCGSL 479

Query: 555 DDVATI 560
           DD   I
Sbjct: 480 DDAQAI 485



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 120/229 (52%), Gaps = 12/229 (5%)

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           + PN    ++++ AC+ LG L  G+ IH+ I     + N+V L  +LI MY+KCG++  A
Sbjct: 3   VRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSV-LGNALISMYSKCGSLIDA 61

Query: 390 EQVFDGM---GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL-QPDDITFVGVLSA 445
           +Q FD +     + + +WNAMIS    +G A +AL LF  M  +G   P+ +TFV VL +
Sbjct: 62  KQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDS 121

Query: 446 CNHAGLLDIGR-QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA-EALLKTMEMKPD 503
           C  AGLL +   +  +  I    I  +      +VD  G+ G  D+A E  L+  + +P 
Sbjct: 122 CVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPS 181

Query: 504 AAIWT--SLLGACRVHGRLELGESVAK-HLLELEPENPGAYVLLSNMYA 549
            ++ T  +++ AC  +G  +  ES+   + + LE   P    L+S + A
Sbjct: 182 TSLVTCSAMISACWQNGWPQ--ESLRLFYAMNLEGTKPSGVTLVSVLNA 228


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 255/631 (40%), Positives = 382/631 (60%), Gaps = 21/631 (3%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G ++ A  VF+ + E N V W +++RG+        A K +  M     V  T     +L
Sbjct: 97  GMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLL 156

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
           K     S I + K++   +     E D  V T++I  Y Q G L+ AR +F++  +R+  
Sbjct: 157 KE----SRIDDAKKLFDMIP----EKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVF 208

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           ++T +++GYA  G +D AR+LF+ MP R      NE +   +L      G ++       
Sbjct: 209 TWTTMVSGYAKNGRVDVARKLFEVMPER------NEVSWTAMLMGYTQSGRMKEA---FE 259

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
           L E   +   +   N +I  +   G++ +AR +FE +++RD  +WN MI  +       E
Sbjct: 260 LFEAMPV-KWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLE 318

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           AL LF +M +  +  N  + +SVL  CA L +LD G+ +HA + ++     ++ + + LI
Sbjct: 319 ALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFD-QDLYVASVLI 377

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI 437
            MY KCG++  A+ +F+   +K +  WN+MI+G + HG  ++AL++F  M   G+QPD++
Sbjct: 378 TMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEV 437

Query: 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT 497
           TF+GVLSAC+++G +  G + F AM   Y++ P ++HY CMVDLLGRAG  DEA  L++ 
Sbjct: 438 TFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEK 497

Query: 498 MEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557
           M M+PDA +W +LLGACR H +L+L E   + L +LEP+N G YVLLS+MYA  GRW DV
Sbjct: 498 MPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRDV 557

Query: 558 ATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGD-KVHPQSKHIYEMLDEIDALLEKSGF 616
             +R ++N + + K PGCS IEV   VH F  GD K HP+   I +ML+++   L ++G+
Sbjct: 558 EVLRKKINRRVI-KFPGCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLEKLSGFLREAGY 616

Query: 617 VPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKL 676
            PD S VL+D+DEE K  +L +HSE+LA+AYGL+    G  IR++KNLRVCG+CHSA KL
Sbjct: 617 CPDGSFVLHDVDEEEKTHSLGYHSERLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKL 676

Query: 677 ISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           I+K+  REII RD NRFHHFKDG+CSC D+W
Sbjct: 677 IAKVTGREIILRDANRFHHFKDGSCSCKDFW 707



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 120/524 (22%), Positives = 209/524 (39%), Gaps = 95/524 (18%)

Query: 78  GDLSYALLVFETIREPNQVI--WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPF 135
           GD+  A  VF+    P + I  WN ++  +  S  P  A+  + +M      P   T  F
Sbjct: 33  GDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQM------PQRNTVSF 86

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
                                              +I+ Y +NG +  AR VF+    R+
Sbjct: 87  ---------------------------------NGMISGYVKNGMVADARKVFDVMPERN 113

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
            VS+T+++ GY   G +++A +LF EMP R      N  +   ++        ++    +
Sbjct: 114 VVSWTSMVRGYVQEGMVEEAEKLFWEMPRR------NVVSWTVMIGGLLKESRIDDAKKL 167

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
             +I       ++ V   +I  Y + G L +AR+LF+ ++ R+V +W  M+ GY      
Sbjct: 168 FDMIP----EKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRV 223

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
             A  LF  M     E N+V++ ++L     +G    G+   A+       +  +     
Sbjct: 224 DVARKLFEVM----PERNEVSWTAML-----MGYTQSGRMKEAFELFEAMPVKWIVACNE 274

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           +I  +   G +  A  +F+GM  +   +WNAMI      G   +AL LF+RM  EG+  +
Sbjct: 275 MILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALN 334

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQD------YKISPKLQHYGCMVDLLGRAGLFD 489
             + + VLS C     LD GRQ    +++       Y  S  +  Y    DL+   G+F+
Sbjct: 335 FPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFN 394

Query: 490 E----------------------AEALLKTMEM-----KPDAAIWTSLLGACRVHGRLEL 522
                                   EAL    +M     +PD   +  +L AC   G+++ 
Sbjct: 395 RFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKE 454

Query: 523 GESVAKHLLELEPENPGA--YVLLSNMYAGAGRWDDVATIRTRL 564
           G  + + +       PG   Y  + ++   AGR D+   +  ++
Sbjct: 455 GFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKM 498


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 234/576 (40%), Positives = 368/576 (63%), Gaps = 5/576 (0%)

Query: 126 FVPNTYTF-PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
           ++P    F   +LK C     + +G+ +HAH+L+     D  +  +L+NMYA+ G LE A
Sbjct: 55  YIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEA 114

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
           R VF K   RD V++T LI+GY+      DA   F++M      + PNE T+ +V+ A A
Sbjct: 115 RKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQM--LRFGYSPNEFTLSSVIKAAA 172

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
                  G+ +       G  SN+HV +AL+D+Y++ G +  A+ +F+++E R+ +SWN 
Sbjct: 173 AERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNA 232

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           +I G+   S  ++AL LF+ ML+    P+  ++ S+  AC+  G L+ GKW+HAY+ K+ 
Sbjct: 233 LIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSG 292

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF 424
           +KL   +   +L+DMYAK G+I  A ++FD +  + + SWN++++  A HG   +A+  F
Sbjct: 293 EKLVAFA-GNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWF 351

Query: 425 SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484
             M   G++P++I+F+ VL+AC+H+GLLD G  Y+  M +D  I P+  HY  +VDLLGR
Sbjct: 352 EEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGR 410

Query: 485 AGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL 544
           AG  + A   ++ M ++P AAIW +LL ACR+H   ELG   A+H+ EL+P++PG +V+L
Sbjct: 411 AGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVIL 470

Query: 545 SNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEML 604
            N+YA  GRW+D A +R ++ + G+KK P CS +E+ + +H F+  D+ HPQ + I    
Sbjct: 471 YNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKW 530

Query: 605 DEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNL 664
           +E+ A +++ G+VPDTS V+  +D++ +E  L +HSEK+A+A+ L++T PG+TI I KN+
Sbjct: 531 EEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNI 590

Query: 665 RVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGN 700
           RVCG+CH+A KL SK+  REII RD NRFHHFKD +
Sbjct: 591 RVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDAS 626



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 131/440 (29%), Positives = 222/440 (50%), Gaps = 15/440 (3%)

Query: 1   MALPPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQ---VHSQIIKTG 57
           +  P + L L  S      S  P  +   N     LL KCT  + + Q   VH+ I+++ 
Sbjct: 35  LKFPSNDLLLRTSSNDLEGSYIPADRRFYN----TLLKKCTVFKLLIQGRIVHAHILQSI 90

Query: 58  LHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKF 117
             +     + L+ + A    G L  A  VFE + + + V W  +I G+S    P  A+ F
Sbjct: 91  FRHDIVMGNTLLNMYAKC--GSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLF 148

Query: 118 YVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ 177
           + +M+  G+ PN +T   ++K+ A       G Q+H   +K G +S+  V ++L+++Y +
Sbjct: 149 FNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTR 208

Query: 178 NGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVV 237
            G ++ A+LVF+    R+ VS+ ALI G+A R   + A +LF  M    + F P+  +  
Sbjct: 209 YGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGM--LRDGFRPSHFSYA 266

Query: 238 TVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR 297
           ++  AC+  G LE G WV + +   G        N L+DMY+K G +  AR +F+ + KR
Sbjct: 267 SLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKR 326

Query: 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357
           DV+SWN ++  Y      KEA+  F +M +  I PN+++FLSVL AC++ G LD G W +
Sbjct: 327 DVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEG-WHY 385

Query: 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGK 416
             + K    +     + +++D+  + G++  A +  + M  + T A W A+++   MH  
Sbjct: 386 YELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKN 445

Query: 417 ADKALSLFSRMIGEGLQPDD 436
            +  L  ++      L PDD
Sbjct: 446 TE--LGAYAAEHVFELDPDD 463


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 234/582 (40%), Positives = 356/582 (61%), Gaps = 4/582 (0%)

Query: 126 FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR 185
             P    +   + +CA+   + + ++IHAH+       D F+  SLI+MY +   +  AR
Sbjct: 47  LAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDAR 106

Query: 186 LVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH 245
            VF++   +D VS+T+LI GYA      +A  L   M   +  F PN  T  ++L A   
Sbjct: 107 NVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGM--LKGRFKPNGFTFASLLKAAGA 164

Query: 246 MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVM 305
                 G  + +L    G   +++V +AL+DMY++CG +  A  +F+ ++ ++ +SWN +
Sbjct: 165 YADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNAL 224

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365
           I G+    D + ALM F +ML++  E    T+ SV  + A LGAL+ GKW+HA++ K+ Q
Sbjct: 225 ISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQ 284

Query: 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
           KL    +  +L+DMYAK G++  A +VFD +  K L +WN+M++  A +G   +A+S F 
Sbjct: 285 KLTAF-VGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFE 343

Query: 426 RMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485
            M   G+  + ITF+ +L+AC+H GL+  G++YF  M+++Y + P++ HY  +V LLGRA
Sbjct: 344 EMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFE-MMKEYDLEPEIDHYVTVVALLGRA 402

Query: 486 GLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545
           GL + A   +  M M+P AA+W +LL ACR+H   ++G+  A H+ EL+P++ G  VLL 
Sbjct: 403 GLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLY 462

Query: 546 NMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLD 605
           N+YA  G+WD  A +R  +   G+KK P CS +E+ + VH F+  D  HPQ++ IY+M  
Sbjct: 463 NIYASTGQWDAAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYKMWG 522

Query: 606 EIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLR 665
           EI   + K G+VPD   VL  +D++ KE  L +HSEKLA+A+ LI    G TIRI+KN+R
Sbjct: 523 EISKKIRKEGYVPDMDYVLLHVDDQEKEANLQYHSEKLALAFALIEMPAGATIRIMKNIR 582

Query: 666 VCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +CG+CHSA K ISK+F REI+ RD NRFHHF  G+CSC DYW
Sbjct: 583 ICGDCHSAFKYISKVFGREIVVRDTNRFHHFSSGSCSCGDYW 624



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 206/401 (51%), Gaps = 10/401 (2%)

Query: 38  SKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEI-CAVSPFGDLSYALLVFETIREPNQV 96
           ++  N+++ +++H+ +  +      F  + LI + C      D   A  VF+ +R  + V
Sbjct: 62  AQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLD---ARNVFDQMRRKDMV 118

Query: 97  IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHV 156
            W ++I G++ +  PV AI     M+   F PN +TF  +LK+    +    G+QIHA  
Sbjct: 119 SWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALA 178

Query: 157 LKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDAR 216
           +K G   D +V ++L++MYA+ G+++ A  VF+K   ++ VS+ ALI+G+A +G  + A 
Sbjct: 179 VKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGESAL 238

Query: 217 QLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALID 276
             F EM      F     T  +V S+ A +G+LE G WV + +          V N L+D
Sbjct: 239 MTFAEM--LRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLD 296

Query: 277 MYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVT 336
           MY+K G ++ AR +F+ ++ +D+++WN M+  +      KEA+  F +M +S +  N +T
Sbjct: 297 MYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQIT 356

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
           FL +L AC++ G +  GK     + K +     +  + +++ +  + G +  A      M
Sbjct: 357 FLCILTACSHGGLVKEGKRYFEMM-KEYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKM 415

Query: 397 GYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
             + T A W A+++   MH  A K     +  + E L PDD
Sbjct: 416 PMEPTAAVWGALLAACRMHKNA-KVGQFAADHVFE-LDPDD 454


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 244/655 (37%), Positives = 390/655 (59%), Gaps = 36/655 (5%)

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMIL--SGFVPNTYTFPFILKSCAKI 143
           +F ++ + + V +N +I G S   S   A++ Y+ ++   S   P+  T   ++ + + +
Sbjct: 94  LFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASAL 153

Query: 144 SAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ-------------------------- 177
              + GKQ H  +L+LG  ++ FV + L++MYA+                          
Sbjct: 154 GDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMI 213

Query: 178 NGEL-----ESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPN 232
            G L     E AR +F   + RD++++T ++TG+   G   +A ++F  M  R +    +
Sbjct: 214 TGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRM--RFQGIAID 271

Query: 233 ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFE 292
           + T  ++L+AC  + +LE G  + + I       N+ V +AL+DMYSKC  +  A  +F 
Sbjct: 272 QYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFR 331

Query: 293 SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL 352
            +  +++ISW  +I GY      +EA+ +F +M +  I+P+D T  SV+ +CA L +L+ 
Sbjct: 332 RMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEE 391

Query: 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLA 412
           G   H  +      ++ +++  +L+ +Y KCG+I+ A ++FD M +    SW A++SG A
Sbjct: 392 GAQFHC-LALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYA 450

Query: 413 MHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL 472
             G+A + + LF +M+ +G++PD +TF+GVLSAC+ AG ++ GR YF++M +D+ I P  
Sbjct: 451 QFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPID 510

Query: 473 QHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
            HY CM+DL  R+G   EAE  +K M M PDA  W +LL ACR+ G +E+G+  A++LLE
Sbjct: 511 DHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLE 570

Query: 533 LEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDK 592
           ++P+NP +YVLL +M+A  G+W++VA +R  + D+ +KK PGCS I+  + VH F   D+
Sbjct: 571 IDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQ 630

Query: 593 VHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLIST 652
            HP SK IYE L+ +++ + + G+ PD S VL+D+ +  K   +SHHSEKLAIA+GLI  
Sbjct: 631 SHPCSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLAIAFGLIFV 690

Query: 653 KPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
                IRIVKNLRVC +CH+ATK ISKI  R+I+ RD  RFH F DG CSC D+W
Sbjct: 691 PQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGVCSCGDFW 745



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 127/427 (29%), Positives = 200/427 (46%), Gaps = 46/427 (10%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P TY    +L +  K    +  +++   +    L    F + +L++  A    L     +
Sbjct: 39  PPTYLLNHLLTAYGKAGRHARARRVFDAMPHPNL----FTYNALLSTLAHARLLSDMEAL 94

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
           F   + RD VSY A+I G++  G    A +++  +   + +  P+  T+ T++ A + +G
Sbjct: 95  FASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALG 154

Query: 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK--------------------------- 280
              LG      I   G G+N  V + L+DMY+K                           
Sbjct: 155 DRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMIT 214

Query: 281 ----CGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVT 336
               C  + +AR LFE +  RD I+W  M+ G+T      EAL +FR+M    I  +  T
Sbjct: 215 GLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYT 274

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
           F S+L AC  L AL+ GK IHAYI +     +NV + ++L+DMY+KC +IK AE VF  M
Sbjct: 275 FGSILTACGALSALEQGKQIHAYIIRTRYD-DNVFVGSALVDMYSKCRSIKLAETVFRRM 333

Query: 397 GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR 456
             K + SW A+I G   +G +++A+ +FS M  +G+ PDD T   V+S+C +   L+ G 
Sbjct: 334 TCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGA 393

Query: 457 QYFNAMIQDYKISPKLQHY----GCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           Q+         +   L HY      +V L G+ G  ++A  L   M    D   WT+L+ 
Sbjct: 394 QF-----HCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWTALVS 447

Query: 513 ACRVHGR 519
                GR
Sbjct: 448 GYAQFGR 454



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/423 (25%), Positives = 191/423 (45%), Gaps = 64/423 (15%)

Query: 35  ALLSKC---TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ++L+ C   + ++  KQ+H+ II+T   +  F  S L+++   S    +  A  VF  + 
Sbjct: 277 SILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDM--YSKCRSIKLAETVFRRMT 334

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             N + W  +I G+  +     A++ +  M   G  P+ YT   ++ SCA ++++ EG Q
Sbjct: 335 CKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQ 394

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
            H   L  GL     V  +L+ +Y + G +E A  +F++ S  D VS+TAL++GYA  G 
Sbjct: 395 FHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGR 454

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHV 270
             +   LF++M  +     P+  T + VLSAC+  G +E G ++  S+ + HG+      
Sbjct: 455 AKETIDLFEKMLAK--GVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDH 512

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
              +ID+YS+ G L                               KEA    +QM    +
Sbjct: 513 YTCMIDLYSRSGKL-------------------------------KEAEEFIKQM---PM 538

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN--NVSLWTSLIDMYAKCGNIKA 388
            P+ + + ++L AC   G +++GKW      +N  +++  N + +  L  M+A  G    
Sbjct: 539 HPDAIGWGTLLSACRLRGDMEIGKW----AAENLLEIDPQNPASYVLLCSMHAAKGQWNE 594

Query: 389 AEQVFDGMGYKTL-----ASWNAMISGLAMHGKADKALS-----------LFSRMIGEGL 432
             Q+  GM  + +      SW    + + +    D++             L S+M+ EG 
Sbjct: 595 VAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGY 654

Query: 433 QPD 435
           +PD
Sbjct: 655 KPD 657



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 158/379 (41%), Gaps = 82/379 (21%)

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
           L+T Y   G    AR++FD MP       PN  T   +LS  AH                
Sbjct: 47  LLTAYGKAGRHARARRVFDAMP------HPNLFTYNALLSTLAH---------------- 84

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALML 321
                       L DM +          LF S+ +RD++S+N +I G++    + +A+ +
Sbjct: 85  ---------ARLLSDMEA----------LFASMTQRDIVSYNAVIAGFSGGGSHAQAVRV 125

Query: 322 FRQMLQ--SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
           +  +LQ  S++ P+ +T  +++ A + LG   LGK  H  I +     N   + + L+DM
Sbjct: 126 YLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAF-VGSPLVDM 184

Query: 380 YAK-------------------------------CGNIKAAEQVFDGMGYKTLASWNAMI 408
           YAK                               C  ++ A ++F+ M  +   +W  M+
Sbjct: 185 YAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMV 244

Query: 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
           +G   +G   +AL +F RM  +G+  D  TF  +L+AC     L+ G+Q  +A I   + 
Sbjct: 245 TGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQ-IHAYIIRTRY 303

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
              +     +VD+  +      AE + + M  K +   WT+L+     +G+    E   +
Sbjct: 304 DDNVFVGSALVDMYSKCRSIKLAETVFRRMTCK-NIISWTALIVG---YGQNGCSEEAVR 359

Query: 529 HLLELEPE--NPGAYVLLS 545
              E++ +  +P  Y L S
Sbjct: 360 VFSEMQRDGIDPDDYTLGS 378


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 391/659 (59%), Gaps = 5/659 (0%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           VHS   K G  +  F  S LI+  A S    +S A  VF  I   + V+W  ++  +S +
Sbjct: 184 VHSCAWKLGHDHNAFVGSGLID--AYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSEN 241

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVH 168
             P  A + + +M +SG  PN +    +LK+   + ++  GK IH   +K   +++P V 
Sbjct: 242 DCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVG 301

Query: 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
            +L++MYA+ G+++ ARL F      D +  + +I+ YA     + A +LF  + +   +
Sbjct: 302 GALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELF--LRLMRSS 359

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288
            +PNE ++ +VL AC +M  L+ G  + +     G  S+L V NAL+D Y+KC D+  + 
Sbjct: 360 VLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSL 419

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
            +F S+   + +SWN ++ G++ +   +EAL +F +M  + +    VT+ SVL ACA   
Sbjct: 420 KIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTA 479

Query: 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI 408
           ++     IH  I+K+    N+  +  SLID YAKCG I+ A +VF  +  + + SWNA+I
Sbjct: 480 SIRHAGQIHCSIEKSTFN-NDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAII 538

Query: 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
           SG A+HG+A  AL LF RM    ++ +DITFV +LS C+  GL++ G   F++M  D+ I
Sbjct: 539 SGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGI 598

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
            P ++HY C+V LLGRAG  ++A   +  +   P A +W +LL +C +H  + LG   A+
Sbjct: 599 KPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAE 658

Query: 529 HLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFL 588
            +LE+EP++   YVLLSNMYA AG  D VA +R  + + G++KVPG S +E+   +H F 
Sbjct: 659 KILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFS 718

Query: 589 VGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYG 648
           VG   HP  + I  ML+ ++    + G++PD + VL+D+D+E K   L  HSE+LA+AYG
Sbjct: 719 VGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYG 778

Query: 649 LISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           L+ T PG  IRI+KNLR C +CH+A  +ISKI  REII RD NRFHHF+DG CSC DYW
Sbjct: 779 LVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 837



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 139/511 (27%), Positives = 242/511 (47%), Gaps = 51/511 (9%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICA------VSPFGDLSYALLVFETIREPNQVIWNN 100
           + VH  +++ G       + +L   CA          G L+ A  +F+ + E N V +  
Sbjct: 79  RAVHGHVVRRG------GVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVT 132

Query: 101 IIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG 160
           +++ H+       A   + R+   G   N +    +LK    + A      +H+   KLG
Sbjct: 133 LVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLG 192

Query: 161 LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD 220
            + + FV + LI+ Y+    +  A  VFN    +DAV +TA+++ Y+     ++A ++F 
Sbjct: 193 HDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFS 252

Query: 221 EMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG------SNLHVTNAL 274
           +M  R     PN   + +VL A   + S+ LG  +      HG        +  HV  AL
Sbjct: 253 KM--RVSGCKPNPFALTSVLKAAVCLPSVVLGKGI------HGCAIKTLNDTEPHVGGAL 304

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
           +DMY+KCGD+  AR  FE I   DVI  + MI  Y  ++  ++A  LF ++++S++ PN+
Sbjct: 305 LDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNE 364

Query: 335 VTFLSVLPACAYLGALDLGKWIHAY-IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
            +  SVL AC  +  LD GK IH + I   H+  +++ +  +L+D YAKC ++ ++ ++F
Sbjct: 365 YSLSSVLQACTNMVQLDFGKQIHNHAIKIGHE--SDLFVGNALMDFYAKCNDMDSSLKIF 422

Query: 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC------N 447
             +      SWN ++ G +  G  ++ALS+F  M    +    +T+  VL AC       
Sbjct: 423 SSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIR 482

Query: 448 HAGLL--DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           HAG +   I +  FN    D  I   L      +D   + G   +A  + + + M+ D  
Sbjct: 483 HAGQIHCSIEKSTFN---NDTVIGNSL------IDTYAKCGYIRDALKVFQHL-MERDII 532

Query: 506 IWTSLLGACRVHGR----LELGESVAKHLLE 532
            W +++    +HG+    LEL + + K  +E
Sbjct: 533 SWNAIISGYALHGQAADALELFDRMNKSNVE 563



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 164/344 (47%), Gaps = 11/344 (3%)

Query: 127 VPNTYTFPFI--LKSCAKISAISEGKQIHAHVLKLGL--ESDPFVHTSLINMYAQNGELE 182
           VP   +F     L+ C        G+ +H HV++ G     D F    L+NMY + G L 
Sbjct: 54  VPGVDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLA 113

Query: 183 SARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSA 242
           SAR +F++   R+ VS+  L+  +A RG  + A  LF  +  R E    N+  + T+L  
Sbjct: 114 SARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRL--RWEGHEVNQFVLTTMLKL 171

Query: 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
              M +  L   V S     G   N  V + LID YS C  +  A  +F  I ++D + W
Sbjct: 172 AIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVW 231

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
             M+  Y+     + A  +F +M  S  +PN     SVL A   L ++ LGK IH    K
Sbjct: 232 TAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIK 291

Query: 363 NHQKLNNVS--LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
               LN+    +  +L+DMYAKCG+IK A   F+ + Y  +   + MIS  A   + ++A
Sbjct: 292 T---LNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQA 348

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
             LF R++   + P++ +   VL AC +   LD G+Q  N  I+
Sbjct: 349 FELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIK 392


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 240/665 (36%), Positives = 374/665 (56%), Gaps = 38/665 (5%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           GD   A  +F+ I +P+    + +I   +    P  AI+ Y  +   G  P+   F  + 
Sbjct: 80  GDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVA 139

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
           K+C      S  K++H   ++ G+ SD F+  +LI+ Y +   +E AR VF+   ++D V
Sbjct: 140 KACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVV 199

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           S+T++ + Y + G       +F EM        PN  T+ ++L AC+ +  L+ G  +  
Sbjct: 200 SWTSMSSCYVNCGLPRLGLAVFCEMGW--NGVKPNSVTLSSILPACSELKDLKSGRAIHG 257

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
               HG+  N+ V +AL+ +Y++C  + +AR +F+ +  RDV+SWN ++  Y    +Y +
Sbjct: 258 FAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDK 317

Query: 318 ALMLFRQMLQSNIE-----------------------------------PNDVTFLSVLP 342
            L LF QM    +E                                   PN +T  S LP
Sbjct: 318 GLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLP 377

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           AC+ L +L +GK +H Y+ + H  + +++  T+L+ MYAKCG++  +  VFD +  K + 
Sbjct: 378 ACSILESLRMGKEVHCYVFR-HWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVV 436

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           +WN MI   AMHG   + L LF  M+  G++P+ +TF GVLS C+H+ L++ G Q FN+M
Sbjct: 437 AWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSM 496

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
            +D+ + P   HY CMVD+  RAG   EA   ++ M M+P A+ W +LLGACRV+  +EL
Sbjct: 497 GRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVEL 556

Query: 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582
            +  A  L E+EP NPG YV L N+   A  W + +  R  + ++G+ K PGCS ++VG 
Sbjct: 557 AKISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQVGD 616

Query: 583 VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEK 642
            VH F+VGDK + +S  IY  LDE+   ++ +G+ PDT  VL D+D+E K  +L  HSEK
Sbjct: 617 RVHTFVVGDKNNMESDKIYNFLDELGEKMKSAGYKPDTDYVLQDIDQEEKAESLCSHSEK 676

Query: 643 LAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCS 702
           LA+A+G+++    ++IR+ KNLR+CG+CH+A K +SK+    II RD  RFHHF++GNCS
Sbjct: 677 LAVAFGILNLNGQSSIRVFKNLRICGDCHNAIKYVSKVVGVTIIVRDSLRFHHFRNGNCS 736

Query: 703 CNDYW 707
           C D W
Sbjct: 737 CQDLW 741



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 198/409 (48%), Gaps = 36/409 (8%)

Query: 46  IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           +K+VH   I+ G+ +  F  + LI   A      +  A  VF+ +   + V W ++   +
Sbjct: 151 VKEVHDDAIRCGMMSDAFLGNALIH--AYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCY 208

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
                P + +  +  M  +G  PN+ T   IL +C+++  +  G+ IH   ++ G+  + 
Sbjct: 209 VNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENV 268

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM--- 222
           FV ++L+++YA+   ++ ARLVF+    RD VS+  ++T Y +    D    LF +M   
Sbjct: 269 FVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSK 328

Query: 223 ------------------------------PIREENFVPNESTVVTVLSACAHMGSLELG 252
                                          ++   F PN+ T+ + L AC+ + SL +G
Sbjct: 329 GVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMG 388

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
             V   +  H L  +L    AL+ MY+KCGDL  +R++F+ I ++DV++WN MI      
Sbjct: 389 KEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMH 448

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
            + +E L+LF  MLQS I+PN VTF  VL  C++   ++ G  I   + ++H    + + 
Sbjct: 449 GNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANH 508

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHGKADKA 420
           +  ++D++++ G +  A +    M  +  AS W A++    ++   + A
Sbjct: 509 YACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELA 557


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 258/677 (38%), Positives = 394/677 (58%), Gaps = 13/677 (1%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +L  C  + ++   ++VH  +I+ G  +    ++ LI +      GD+  A LVF+ +  
Sbjct: 201 VLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYV--KCGDIFSARLVFDRMPR 258

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            +++ WN +I G+  +   +  ++ +  M      P+  T   ++ +C  +     G+++
Sbjct: 259 RDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREV 318

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H +V+K G  ++  V+ SLI M++  G  + A +VF+K   +D VS+TA+I+GY   G  
Sbjct: 319 HGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLP 378

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           + A + +  M    E  VP+E T+ +VLSACA +G L+ G  +    +  GL S + V N
Sbjct: 379 EKAVETYTIM--EHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVAN 436

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           +LIDMYSKC  + KA ++F  I  ++VISW  +I G        EAL  F+QM+ S ++P
Sbjct: 437 SLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKP 495

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N VT +SVL ACA +GAL  GK IHA+  +     +   L  +L+DMY +CG ++ A   
Sbjct: 496 NSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGF-LPNALLDMYVRCGRMEPAWNQ 554

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F+    K +ASWN +++G A  GK   A+ LF +MI   + PD+ITF  +L AC+ +G++
Sbjct: 555 FNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMV 613

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
             G +YF +M   + I+P L+HY  +VDLLGRAG  ++A   +K M + PD AIW +LL 
Sbjct: 614 TDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLN 673

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           ACR++  +ELGE  A+H+ E++ ++ G Y+LL N+YA +G+WD+VA +R  + +  +   
Sbjct: 674 ACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVD 733

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
           PGCS +EV   VH FL GD  HPQ K I  +L+     +E +G          D+D   K
Sbjct: 734 PGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSRRDDIDAS-K 792

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
                 HSE+LAIA+GLI+T PGT I + KNL +C NCH+  K ISK+  R I  RD  +
Sbjct: 793 AEIFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRGISVRDTEQ 852

Query: 693 FHHFKDGNCSCND--YW 707
           FHHFKDG CSC D  YW
Sbjct: 853 FHHFKDGVCSCGDEGYW 869



 Score =  248 bits (633), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 179/572 (31%), Positives = 285/572 (49%), Gaps = 55/572 (9%)

Query: 28  LQNQPSLALLSKCTNMQNIKQ---VHSQIIKT----GLHNTQFALSKLIEICAVSPFGDL 80
           ++ +  +ALL  C   +   +   VHS + KT    G+      LS  +       FGDL
Sbjct: 92  VEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVR------FGDL 145

Query: 81  SYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSC 140
             A  VF  + E +   WN ++ G++ +     A+  Y RM+  G  P+ YTFP +L++C
Sbjct: 146 VEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTC 205

Query: 141 AKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYT 200
             +  ++ G+++H HV++ G ESD  V  +LI MY + G++ SARLVF++   RD +S+ 
Sbjct: 206 GGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWN 265

Query: 201 ALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE 260
           A+I+GY       +  +LF  M  RE    P+  T+ +V+SAC  +G   LG  V   + 
Sbjct: 266 AMISGYFENDVCLEGLRLFFMM--REFFVDPDLMTMTSVISACEALGDERLGREVHGYVI 323

Query: 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALM 320
             G  + + V N+LI M+S  G   +A  +F  +E +D++SW  MI GY      ++A+ 
Sbjct: 324 KTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVE 383

Query: 321 LFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMY 380
            +  M    + P+++T  SVL ACA LG LD G  +H + D+     + V +  SLIDMY
Sbjct: 384 TYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLT-SYVIVANSLIDMY 442

Query: 381 AKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFV 440
           +KC  I  A +VF  +  K + SW ++I GL ++ ++ +AL  F +MI   L+P+ +T V
Sbjct: 443 SKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMI-LSLKPNSVTLV 501

Query: 441 GVLSACNHAGLLDIGRQYF---------------NAMIQDY----KISPKLQHY-GCMVD 480
            VLSAC   G L  G++                 NA++  Y    ++ P    +  C  D
Sbjct: 502 SVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCEKD 561

Query: 481 LL------------GRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR----LELGE 524
           +             G+ GL  E    +   ++ PD   +TSLL AC   G     LE  E
Sbjct: 562 VASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFE 621

Query: 525 SVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
           S+ +H   + P N   Y  + ++   AGR +D
Sbjct: 622 SM-EHKFHIAP-NLKHYASVVDLLGRAGRLED 651


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 245/563 (43%), Positives = 366/563 (65%), Gaps = 8/563 (1%)

Query: 150 KQIHAHVLK--LGLESDPFVHTSLINMYAQN--GELESARLVFNKSSLRDAVSYTALITG 205
           +QIHA +L   + + S  F    +I   A +  G+++ AR +F++    +  S+ ++I G
Sbjct: 5   RQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSMIRG 64

Query: 206 YA-SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
            + S+    +   LF +M +R     PN  T+  VL AC+ + +LE G  V + +   G 
Sbjct: 65  CSQSQTPSKEPVILFRKM-VRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGF 123

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
           GS+  V  AL++ Y+KC D+V A  +F+ I  R++++W+ MI GY       EAL LFR 
Sbjct: 124 GSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRD 183

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           M ++ + P++VT +SV+ ACA  GALD GKW+HAYI+K   +  ++ L T+L++MYAKCG
Sbjct: 184 MQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIE-TDLELSTALVNMYAKCG 242

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
            I+ A++VFD M  K   +W++MI GLA++G A+ AL  F RM    ++P+ +TF+GVLS
Sbjct: 243 CIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLS 302

Query: 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504
           AC H+GL+  GR+Y+++M++ + I P ++ YGCMVDLL RA L ++A  L++TM + P+ 
Sbjct: 303 ACAHSGLVSEGRRYWSSMLE-FGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNP 361

Query: 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564
            IW +LL  C+    L+  E VA+ LLELEP N   Y+LLSN+YA   +W+ ++ +R ++
Sbjct: 362 VIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKMSQVRKKM 421

Query: 565 NDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVL 624
              G+K VPGCSSIEV  +VHEF++GD  HP++  + E+L +I   +   G  P  S+VL
Sbjct: 422 KGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRVHAVGHQPGISDVL 481

Query: 625 YDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNRE 684
           +++ +E KE AL  HSE+LAIAYGL+ TK    IRIVKNLRVCG+CH  TK+IS  + RE
Sbjct: 482 HNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGDCHEVTKIISAEYRRE 541

Query: 685 IIARDRNRFHHFKDGNCSCNDYW 707
           II RDR RFH F +G+CSC D+W
Sbjct: 542 IIVRDRVRFHKFVNGSCSCRDFW 564



 Score =  239 bits (609), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 127/391 (32%), Positives = 237/391 (60%), Gaps = 8/391 (2%)

Query: 43  MQNIKQVHSQIIKTGL--HNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNN 100
           M+ ++Q+H++++   +   +  F L K+I  CA+SP+GD+ YA  +F  I+ PN   WN+
Sbjct: 1   MRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNS 60

Query: 101 IIRGHSLSSSPVVA-IKFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQIHAHVLK 158
           +IRG S S +P    +  + +M+  G+  PNT+T  F+LK+C+ +SA+ EG+Q+HA+VLK
Sbjct: 61  MIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLK 120

Query: 159 LGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQL 218
            G  S PFV T+L+N YA+  ++  A  VF++ + R+ V+++ +I+GYA  G +++A  L
Sbjct: 121 SGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGL 180

Query: 219 FDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMY 278
           F +M  ++   VP+E T+V+V+SACA  G+L+ G WV + I    + ++L ++ AL++MY
Sbjct: 181 FRDM--QKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMY 238

Query: 279 SKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
           +KCG + +A+++F+++  +D  +W+ MI G       ++AL  F +M ++ ++PN VTF+
Sbjct: 239 AKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFI 298

Query: 339 SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
            VL ACA+ G +  G+   + +      + ++ L+  ++D+  +   ++ A  + + M  
Sbjct: 299 GVLSACAHSGLVSEGRRYWSSM-LEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPI 357

Query: 399 K-TLASWNAMISGLAMHGKADKALSLFSRMI 428
                 W  ++ G       DK+  +  R++
Sbjct: 358 SPNPVIWRTLLVGCKKSKNLDKSEVVAQRLL 388


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 255/629 (40%), Positives = 374/629 (59%), Gaps = 20/629 (3%)

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKS 139
           +S A   F+T+ E N V W  ++RG+        A   + +M       N  ++  +L  
Sbjct: 94  VSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEK----NVVSWTVMLGG 149

Query: 140 CAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSY 199
             ++  I E + +      +    D    T++I+ Y Q G L  AR +F++   R+ +S+
Sbjct: 150 LIQVRRIDEARGL----FDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISW 205

Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
           T +I+GY   G +D AR+LF+ MP +      NE +   +L      G +E  +    L 
Sbjct: 206 TTMISGYVQNGQVDVARKLFEVMPEK------NEVSWTAMLMGYTQGGRIEEAS---ELF 256

Query: 260 EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEAL 319
           +   + + +   NA+I  + + G++ KAR +F+ I ++D  +W+ MI  Y       EAL
Sbjct: 257 DAMPVKAVV-ACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEAL 315

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
            LF  M +  ++ N  + +SVL  CA L +LD G+ +HA + K+ Q  ++V + + LI M
Sbjct: 316 NLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKS-QFDSDVFVASVLITM 374

Query: 380 YAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439
           Y KCG++  A Q+FD    K +  WN++I+G A HG  ++AL +F  M   G+  D +TF
Sbjct: 375 YVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTF 434

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME 499
           VGVLSAC++ G +  G + F +M   Y + PK +HY CMVDLLGRAGL ++A  L++ M 
Sbjct: 435 VGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMP 494

Query: 500 MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559
           ++ DA IW +LLGACR H  + L E  AK LL+LEP+N G Y+LLSN+YA  GRW DVA 
Sbjct: 495 VEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAE 554

Query: 560 IRTRLNDKGMKKVPGCSSIEVGSVVHEFLVG-DKVHPQSKHIYEMLDEIDALLEKSGFVP 618
           +R  +  K + K PGCS IEV   VH F  G    HP+   I +ML+++D +L ++G+ P
Sbjct: 555 LRRNMRVKKVSKSPGCSWIEVEKRVHMFTGGVSTKHPELSSIMKMLEKLDGMLREAGYYP 614

Query: 619 DTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLIS 678
           D+S VL+D+DEE K  +L HHSE+LA+A+GL+    G  IR++KNLRVCG+CHSA KLI+
Sbjct: 615 DSSFVLHDVDEEEKVRSLGHHSERLAVAFGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIA 674

Query: 679 KIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           KI  REII RD NRFHHFKDG CSC DYW
Sbjct: 675 KITGREIILRDANRFHHFKDGFCSCRDYW 703



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 135/259 (52%), Gaps = 6/259 (2%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G+++ A  VF+ IRE +   W+ +I+ +      V A+  +  M   G   N  +   +L
Sbjct: 278 GEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVL 337

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
             CA ++++  G+Q+HA ++K   +SD FV + LI MY + G+L  AR +F++ S +D V
Sbjct: 338 SVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIV 397

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC- 256
            + ++ITGYA  G +++A Q+F EM         +  T V VLSAC++ G ++ G  +  
Sbjct: 398 MWNSIITGYAQHGLVEEALQVFHEMC--SSGMATDGVTFVGVLSACSYTGKVKEGLEIFE 455

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDY 315
           S+   + +         ++D+  + G +  A DL + +  + D I W  ++G      + 
Sbjct: 456 SMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNM 515

Query: 316 KEALMLFRQMLQSNIEPND 334
             A +  +++LQ  +EP +
Sbjct: 516 NLAEVAAKKLLQ--LEPKN 532



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 121/484 (25%), Positives = 197/484 (40%), Gaps = 102/484 (21%)

Query: 163 SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
           S    + S I  YA+ G++ESAR VF++   +  VS+ +++ GY       +AR LFD+M
Sbjct: 14  SVAIAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKM 73

Query: 223 PIR-----------------------------EENFVP---------NESTVVTVLSACA 244
           P R                             E N V           E  V    +   
Sbjct: 74  PERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFW 133

Query: 245 HMGSLELGNW---------VCSLIEGHGLGSNLHVTNA-----LIDMYSKCGDLVKARDL 290
            M    + +W         V  + E  GL   + V +      +I  Y + G L +AR+L
Sbjct: 134 QMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEAREL 193

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350
           F+ + +R+VISW  MI GY        A  LF  M     E N+V++ ++L     +G  
Sbjct: 194 FDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVM----PEKNEVSWTAML-----MGYT 244

Query: 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISG 410
             G+   A    +   +  V    ++I  + + G +  A QVFD +  K   +W+AMI  
Sbjct: 245 QGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKV 304

Query: 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY---- 466
               G   +AL+LF+ M  EG+Q +  + + VLS C     LD GRQ    +++      
Sbjct: 305 YERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSD 364

Query: 467 -------------------------KISPK-LQHYGCMVDLLGRAGLFDEAEALLKTM-- 498
                                    + SPK +  +  ++    + GL +EA  +   M  
Sbjct: 365 VFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCS 424

Query: 499 -EMKPDAAIWTSLLGACRVHGR----LELGESV-AKHLLELEPENPGAYVLLSNMYAGAG 552
             M  D   +  +L AC   G+    LE+ ES+ +K+L+E + E+   Y  + ++   AG
Sbjct: 425 SGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEH---YACMVDLLGRAG 481

Query: 553 RWDD 556
             +D
Sbjct: 482 LVND 485



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 90/180 (50%), Gaps = 8/180 (4%)

Query: 30  NQPSL-ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALL 85
           N PSL ++LS C ++ ++   +QVH++++K+   +  F  S LI +      GDL  A  
Sbjct: 329 NFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYV--KCGDLVKARQ 386

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145
           +F+     + V+WN+II G++       A++ +  M  SG   +  TF  +L +C+    
Sbjct: 387 IFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGK 446

Query: 146 ISEGKQIHAHVL-KLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-DAVSYTALI 203
           + EG +I   +  K  +E     +  ++++  + G +  A  +  K  +  DA+ + AL+
Sbjct: 447 VKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALL 506


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 243/591 (41%), Positives = 361/591 (61%), Gaps = 5/591 (0%)

Query: 119 VRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN 178
           + M++ G     + +  +L +C    A+ EG+++HAH++K       ++ T L+  Y + 
Sbjct: 40  LEMVMLGPEIGFHCYDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKC 99

Query: 179 GELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVT 238
             LE AR V ++   ++ VS+TA+I+ Y+  G+  +A  +F EM +R +   PNE T  T
Sbjct: 100 DCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEM-MRSDG-KPNEFTFAT 157

Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD 298
           VL++C     L LG  +  LI      S++ V ++L+DMY+K G + +AR++FE + +RD
Sbjct: 158 VLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERD 217

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
           V+S   +I GY      +EAL +F+++    + PN VT+ S+L A + L  LD GK  H 
Sbjct: 218 VVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHC 277

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKAD 418
           ++ +       V L  SLIDMY+KCGN+  A+++FD M  +T  SWNAM+ G + HG   
Sbjct: 278 HVLRRELPFYAV-LQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGR 336

Query: 419 KALSLFSRMIGEG-LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ-DYKISPKLQHYG 476
           + L LF  M  E  ++PD +T + VLS C+H  + D G   ++ M+  +Y I P  +HYG
Sbjct: 337 EVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYG 396

Query: 477 CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536
           C+VD+LGRAG  DEA   +K M  KP A +  SLLGACRVH  +++GE V   L+E+EPE
Sbjct: 397 CIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPE 456

Query: 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQ 596
           N G YV+LSN+YA AGRW+DV  +R  +  K + K PG S I+    +H F   D+ HP+
Sbjct: 457 NAGNYVILSNLYASAGRWEDVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPR 516

Query: 597 SKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGT 656
            + +   + EI   ++++G+VPD S VLYD+DEE KE  L  HSEKLA+ +GLI+T  G 
Sbjct: 517 REEVLAKMKEISIKMKQAGYVPDISCVLYDVDEEQKEKMLLGHSEKLALTFGLITTGEGI 576

Query: 657 TIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            IR+ KNLR+C +CH+  K+ SK+F RE+  RD+NRFH    G CSC DYW
Sbjct: 577 PIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVKGICSCGDYW 627



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 125/419 (29%), Positives = 213/419 (50%), Gaps = 18/419 (4%)

Query: 35  ALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGD---LSYALLVFE 88
           ALL+ C + + +++   VH+ +IKT      +  ++L+       +G    L  A  V +
Sbjct: 56  ALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIF-----YGKCDCLEDARKVLD 110

Query: 89  TIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE 148
            + E N V W  +I  +S +     A+  +  M+ S   PN +TF  +L SC + S ++ 
Sbjct: 111 EMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLAL 170

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           GKQIH  ++K   +S  FV +SL++MYA+ G++E AR +F     RD VS TA+I GYA 
Sbjct: 171 GKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQ 230

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
            G  ++A ++F  +  + E   PN  T  ++L+A + +  L+ G      +    L    
Sbjct: 231 LGLDEEALEMFQRL--QSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYA 288

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-Q 327
            + N+LIDMYSKCG+L  A+ LF+++ +R  ISWN M+ GY+     +E L LFR M  +
Sbjct: 289 VLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDE 348

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIH-AYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
             ++P+ VT L+VL  C++    D G  I+   +   +    +   +  ++DM  + G I
Sbjct: 349 KRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRI 408

Query: 387 KAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
             A +    M  K T     +++    +H   D    +  R+I   ++P++     +LS
Sbjct: 409 DEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLI--EIEPENAGNYVILS 465


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 249/566 (43%), Positives = 348/566 (61%), Gaps = 39/566 (6%)

Query: 175 YAQNGELESARLVFNKSSLRDAV-SYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
           Y+ N  L +   +FNK   +  V S+ ++I   A  G   +A + F  M  R+ +  PN 
Sbjct: 22  YSNNPNLTT---LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSM--RKLSLKPNR 76

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
           ST    + +C+ +  L  G          G   +L V++AL+DMYSKCG+L  AR LF+ 
Sbjct: 77  STFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDE 136

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN------------------------ 329
           I  R+++SW  MI GY    D   AL +F  M + +                        
Sbjct: 137 ISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIF 196

Query: 330 --------IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381
                   I  N VT  +VL ACA+ G+  LGK IH  + K   + +NV + TS+IDMY 
Sbjct: 197 HRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLE-SNVFVGTSIIDMYC 255

Query: 382 KCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVG 441
           KCG ++ A + FD M  K + SW+AM++G  MHG A +AL +F  M   G++P+ ITFV 
Sbjct: 256 KCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVS 315

Query: 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK 501
           VL+AC+HAGLL+ G  +F AM  ++ + P ++HYGCMVDLLGRAG   EA  L+K M+++
Sbjct: 316 VLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLR 375

Query: 502 PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIR 561
           PD  +W +LLGACR+H  ++LGE  A+ L EL+P+N G YVLLSN+YA AGRW+DV  +R
Sbjct: 376 PDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMR 435

Query: 562 TRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTS 621
             + + G+ K PG S +++   VH FLVGD+ HPQ + IYE L+++   L++ G+VPD +
Sbjct: 436 ILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMT 495

Query: 622 EVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIF 681
            VL+D+  E KE  L  HSEKLA+A+G+++T PGTTI I+KNLRVCG+CH+A K ISKI 
Sbjct: 496 SVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIV 555

Query: 682 NREIIARDRNRFHHFKDGNCSCNDYW 707
           +REI+ RD  RFHHF+DG CSC DYW
Sbjct: 556 DREIVVRDSKRFHHFRDGLCSCGDYW 581



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/361 (31%), Positives = 181/361 (50%), Gaps = 33/361 (9%)

Query: 90  IREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG 149
           + + N   WN++I   + S   V A++ +  M      PN  TFP  +KSC+ +  +  G
Sbjct: 36  VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSG 95

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           +Q H   L  G E D FV ++L++MY++ GEL  AR +F++ S R+ VS+T++ITGY   
Sbjct: 96  RQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQN 155

Query: 210 GYLDDARQLFDEMPIRE------------ENFVPNES------------------TVVTV 239
                A ++FD M  R+            +N +  ES                  T+  V
Sbjct: 156 DDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAV 215

Query: 240 LSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV 299
           L ACAH GS  LG  +   +   GL SN+ V  ++IDMY KCG +  AR  F+ + +++V
Sbjct: 216 LLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNV 275

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG-KWIHA 358
            SW+ M+ GY      KEAL +F +M  + ++PN +TF+SVL AC++ G L+ G  W  A
Sbjct: 276 KSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKA 335

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKA 417
            +         V  +  ++D+  + G +K A  +  GM  +     W A++    MH   
Sbjct: 336 -MSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNV 394

Query: 418 D 418
           D
Sbjct: 395 D 395



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 8/183 (4%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K +H Q+IK GL +  F  + +I++      G +  A   F+ +RE N   W+ ++ G+ 
Sbjct: 229 KCIHDQVIKMGLESNVFVGTSIIDM--YCKCGKVEMARKAFDRMREKNVKSWSAMVAGYG 286

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ-IHAHVLKLGLESDP 165
           +      A++ +  M ++G  PN  TF  +L +C+    + EG     A   +  +E   
Sbjct: 287 MHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGV 346

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLR-DAVSYTALITGYASRGYLD----DARQLFD 220
             +  ++++  + G L+ A  +     LR D V + AL+        +D     AR+LF+
Sbjct: 347 EHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFE 406

Query: 221 EMP 223
             P
Sbjct: 407 LDP 409


>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 611

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 247/564 (43%), Positives = 356/564 (63%), Gaps = 8/564 (1%)

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV---FNKSSLRDAVSYTALITGYA 207
           Q  A +LK GL S+P V T L    A         LV      S   DA     LI  + 
Sbjct: 49  QSFAFLLKSGLHSNPLVVTRLFAASASAAPALLEPLVSSLLGPSLPLDAFLVNTLIRTHV 108

Query: 208 SRGYLDDARQLFDEMPIREENFV-PNESTVVTVLSACAHM-GSLELGNWVCSLIEGHGLG 265
           +  +    R+     P+     V PN+ T   +L +CA + GS ++G    +     G  
Sbjct: 109 TSPFPSARRRAAAFFPLMLRAAVAPNKFTFPFLLKSCAALPGSPDVGLQAHAAALKFGFA 168

Query: 266 SNLHVTNALIDMYS--KCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFR 323
           ++ +V+N LI MYS    G L  AR++FE + +   ++W+ MIGGY       +A++LFR
Sbjct: 169 ADHYVSNTLIHMYSCFGAGFLGDARNVFERMPRESAVTWSAMIGGYVRAGLSSDAVVLFR 228

Query: 324 QMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383
            M  S + P++VT + VL A A LGAL+L +W+  ++++      +V+L  +LID  AKC
Sbjct: 229 GMQVSGVRPDEVTVIGVLAAAADLGALELTRWVGRFVEREGIG-KSVTLCNALIDTLAKC 287

Query: 384 GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
           G++  A  VF+GM  +T+ SW ++I  LAM G+  +A+ +F  M   G+ PDD+ F+GVL
Sbjct: 288 GDVDGAVAVFEGMEERTVVSWTSVIDALAMEGRGKEAVGVFEEMKAVGVLPDDVAFIGVL 347

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
           +AC+HAG++D GR YF++M  +Y I PK++HYGCMVD+ GRAG+ ++    ++ M MKP+
Sbjct: 348 TACSHAGMVDEGRGYFDSMKTEYGIEPKIEHYGCMVDMFGRAGMVEQGLEFVRAMPMKPN 407

Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563
             IW +L+ ACR HGRLELGES+ ++LL   P +   YV+LSN+YA   RW + + IR  
Sbjct: 408 PIIWRTLVAACRAHGRLELGESITRNLLNEFPAHEANYVMLSNVYALTQRWKEKSEIRRE 467

Query: 564 LNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEV 623
           ++ +G+KKVPGCS +E+   VHEF+ GD+ HPQ K IY M++E+   L + G +  TSEV
Sbjct: 468 MSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQYKEIYRMVEEMSRELRRIGHIAATSEV 527

Query: 624 LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNR 683
           L D+DEE KEGAL  HSEKLAIA+ L+ T PGT +R+VKNLRVC +CH+A K IS+++NR
Sbjct: 528 LLDLDEEDKEGALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYNR 587

Query: 684 EIIARDRNRFHHFKDGNCSCNDYW 707
           EI+ RDR+RFH FKDG+CSC D+W
Sbjct: 588 EIVVRDRSRFHRFKDGSCSCKDFW 611



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 129/423 (30%), Positives = 214/423 (50%), Gaps = 14/423 (3%)

Query: 19  PSSDP---PYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVS 75
           P+S+P   P +  + Q  L LL + +   ++ Q  + ++K+GLH+    +++L    A +
Sbjct: 18  PASNPTASPSRAAE-QHCLRLLERSSTPASLLQSFAFLLKSGLHSNPLVVTRLFAASASA 76

Query: 76  PFGDLSYALLVFETIREP-NQVIWNNIIRGHSLSSSPVV---AIKFYVRMILSGFVPNTY 131
               L   +        P +  + N +IR H  S  P     A  F+  M+ +   PN +
Sbjct: 77  APALLEPLVSSLLGPSLPLDAFLVNTLIRTHVTSPFPSARRRAAAFFPLMLRAAVAPNKF 136

Query: 132 TFPFILKSCAKISAISE-GKQIHAHVLKLGLESDPFVHTSLINMYA--QNGELESARLVF 188
           TFPF+LKSCA +    + G Q HA  LK G  +D +V  +LI+MY+    G L  AR VF
Sbjct: 137 TFPFLLKSCAALPGSPDVGLQAHAAALKFGFAADHYVSNTLIHMYSCFGAGFLGDARNVF 196

Query: 189 NKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS 248
            +     AV+++A+I GY   G   DA  LF  M +      P+E TV+ VL+A A +G+
Sbjct: 197 ERMPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQV--SGVRPDEVTVIGVLAAAADLGA 254

Query: 249 LELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGG 308
           LEL  WV   +E  G+G ++ + NALID  +KCGD+  A  +FE +E+R V+SW  +I  
Sbjct: 255 LELTRWVGRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMEERTVVSWTSVIDA 314

Query: 309 YTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN 368
                  KEA+ +F +M    + P+DV F+ VL AC++ G +D G+     +   +    
Sbjct: 315 LAMEGRGKEAVGVFEEMKAVGVLPDDVAFIGVLTACSHAGMVDEGRGYFDSMKTEYGIEP 374

Query: 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRM 427
            +  +  ++DM+ + G ++   +    M  K     W  +++    HG+ +   S+   +
Sbjct: 375 KIEHYGCMVDMFGRAGMVEQGLEFVRAMPMKPNPIIWRTLVAACRAHGRLELGESITRNL 434

Query: 428 IGE 430
           + E
Sbjct: 435 LNE 437


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 260/709 (36%), Positives = 415/709 (58%), Gaps = 35/709 (4%)

Query: 18  PPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF 77
           PP+S     +L +     LLS    +++++ +H +I+  G+    F  + L++  +    
Sbjct: 243 PPNSVTFVSVLDSCVEAGLLS----LEDVRAIHGRIVGAGIEREAFVRTALVD--SYGKL 296

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSS------PVVAIKFYVRMILSGFVPNTY 131
           G L  A  VF  +R+ ++    +++   ++ S+      P  +++ +  M L G  P+  
Sbjct: 297 GSLDDAWEVF--LRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLFFAMNLEGTKPSGV 354

Query: 132 TFPFILKSCAKISAISEGKQIHAHVLKLGLE-----SDPFVHTSLINMYAQNGELESARL 186
           T   +L +C+ +   S      A VL+  +E      D  + T+L+  YA++ +L  AR 
Sbjct: 355 TLVSVLNACSMLQVGSAT----AFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLPRARA 410

Query: 187 VFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH- 245
            F+     D VS+ A+   Y       +A  LF+ M +  E   P+ +T +T L+ACA  
Sbjct: 411 TFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLL--EGVRPSVATFITALTACAAY 468

Query: 246 --MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE--KRDVIS 301
               +  +G  + SL+E  GL  +  V NA ++MY+KCG L  AR +FE I   +RD I+
Sbjct: 469 PPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPARRDCIT 528

Query: 302 WNVMIGGYTHTSDYKEALMLFRQM-LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           WN M+  Y H    KEA  LF+ M  +  ++PN VTF++VL A     ++  G+ IHA +
Sbjct: 529 WNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARV 588

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD--GMGYKTLASWNAMISGLAMHGKAD 418
             N  + + V +  +L++MYAKCG++  A+ +FD      + + +W ++I+G A +G+A+
Sbjct: 589 VSNGFESDTV-IQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLIAGYAQYGQAE 647

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478
           +AL LF  M  +G++P+ +TF+  L+ACNH G L+ G +  + M  D+ I P  +H+ C+
Sbjct: 648 RALKLFWTMQQQGVRPNHVTFISALTACNHGGKLEQGCELLSGMTPDHGILPASKHFSCI 707

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
           VDLLGR G  DEAE LL+    + D   W +LL AC+    LE GE  A+ +++L+PE  
Sbjct: 708 VDLLGRCGRLDEAEKLLERTS-QADVITWMALLDACKNSKELERGERCAERIMQLDPEVA 766

Query: 539 GAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSK 598
            +Y++L++MYA AGRW++ ATIR  + DKG++  PGCS++EV   +H F  GDK HP+S+
Sbjct: 767 SSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSAVEVNQELHSFSAGDKSHPKSE 826

Query: 599 HIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTI 658
            IY  L+ +   ++ +G+V DT  VL+D+ +E KE  L  HSEKLAIA+GL+ST  G+ +
Sbjct: 827 EIYLELERLHWSIKAAGYVADTGLVLHDVSQEHKERLLMRHSEKLAIAFGLMSTPSGSPL 886

Query: 659 RIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           R++KNLRVC +CH+ATKLISK+  R+I+ RD +R+HHF  G CSC DYW
Sbjct: 887 RVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYHHFTSGTCSCGDYW 935



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 132/441 (29%), Positives = 216/441 (48%), Gaps = 38/441 (8%)

Query: 132 TFPFILKSCAKISAISEGKQIHAHVL--KLGLESDPFVHTSLINMYAQNGELESARLVFN 189
           T+  +L++C ++ A+ +G+++HAH+L  ++ L +  F+ + LI M+A+ G L  A  + +
Sbjct: 45  TYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALAD 104

Query: 190 KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL 249
           +       S TA+I  +   G  D A +LFD M +R     PN   ++ +++AC+ +G+L
Sbjct: 105 R--FASVYSCTAMIRAWMEHGRPDKAMELFDRMEVR-----PNCHALIALVNACSCLGNL 157

Query: 250 ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI---EKRDVISWNVMI 306
             G  + S I       N  + NALI MYSKCG L+ A+  F+ +    KRDV++WN MI
Sbjct: 158 AAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMI 217

Query: 307 GGYTHTSDYKEALMLFRQMLQSNI-EPNDVTFLSVLPACAYLGALDL-------GKWIHA 358
             +      +EAL LFR M +     PN VTF+SVL +C   G L L       G+ + A
Sbjct: 218 SAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGA 277

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF----DGMGYKTLASWNAMISGLAMH 414
            I++         + T+L+D Y K G++  A +VF    D     +L + +AMIS    +
Sbjct: 278 GIER------EAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQN 331

Query: 415 GKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQH 474
           G   ++L LF  M  EG +P  +T V VL+AC+   +L +G      + Q  ++    + 
Sbjct: 332 GWPQESLRLFFAMNLEGTKPSGVTLVSVLNACS---MLQVGSATAFVLEQAMEVVSATRD 388

Query: 475 YGCMVDLL---GRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLL 531
                 LL    R+     A A    ++  PD   W ++  A   H R      + + +L
Sbjct: 389 NVLGTTLLTTYARSNDLPRARATFDAIQ-SPDVVSWNAMAAAYLQHHRSREALVLFERML 447

Query: 532 ELEPENPGAYVLLSNMYAGAG 552
            LE   P     ++ + A A 
Sbjct: 448 -LEGVRPSVATFITALTACAA 467



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 157/583 (26%), Positives = 260/583 (44%), Gaps = 70/583 (12%)

Query: 36  LLSKCTNMQNIKQ---VHSQII--KTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           LL  C  ++ +KQ   +H+ I+  +  LHN  F  S LI + A    G+L+ A  + +  
Sbjct: 49  LLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHA--KCGNLAEAEALAD-- 104

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
           R  +      +IR       P  A++ + RM +    PN +    ++ +C+ +  ++ G+
Sbjct: 105 RFASVYSCTAMIRAWMEHGRPDKAMELFDRMEVR---PNCHALIALVNACSCLGNLAAGR 161

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN---KSSLRDAVSYTALITGYA 207
           +IH+ +     E +  +  +LI+MY++ G L  A+  F+   ++S RD V++ A+I+ + 
Sbjct: 162 RIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFL 221

Query: 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG--SLELGNWVCSLIEGHGLG 265
             G   +A QLF +M  R+    PN  T V+VL +C   G  SLE    +   I G G+ 
Sbjct: 222 RNGSAREALQLFRDMD-RDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIE 280

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRD------VISWNVMIGGYTHTSDYKEAL 319
               V  AL+D Y K G L  A ++F  + K D      +++ + MI         +E+L
Sbjct: 281 REAFVRTALVDSYGKLGSLDDAWEVF--LRKGDEEPSTSLVTCSAMISACWQNGWPQESL 338

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
            LF  M     +P+ VT +SVL AC+ L       ++     +      +  L T+L+  
Sbjct: 339 RLFFAMNLEGTKPSGVTLVSVLNACSMLQVGSATAFVLEQAMEVVSATRDNVLGTTLLTT 398

Query: 380 YAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439
           YA+  ++  A   FD +    + SWNAM +    H ++ +AL LF RM+ EG++P   TF
Sbjct: 399 YARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEGVRPSVATF 458

Query: 440 VGVLSAC-------------------NHAGLLDIGRQYFNAMIQDY-------------- 466
           +  L+AC                     AG L+      NA +  Y              
Sbjct: 459 ITALTACAAYPPQTASAIGKRIQSLLEEAG-LEGDTAVANATLNMYAKCGSLADARAVFE 517

Query: 467 KISPKLQH---YGCMVDLLGRAGLFDEAEALLKTME----MKPDAAIWTSLLGACRVHGR 519
           +ISP  +    +  M+   G  GL  EA  L + ME    +KP+   + ++L A      
Sbjct: 518 RISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTS 577

Query: 520 LELGESVAKHLLE--LEPENPGAYVLLSNMYAGAGRWDDVATI 560
           +  G  +   ++    E +      LL NMYA  G  DD   I
Sbjct: 578 IAQGREIHARVVSNGFESDTVIQNALL-NMYAKCGSLDDAQAI 619


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/515 (44%), Positives = 332/515 (64%), Gaps = 32/515 (6%)

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
           +R  + +P+  T   VL AC  +  +  G  +  L +  G GSNL + N ++++Y  CG+
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGE 60

Query: 284 LVKARDLFESIEKRDVISWNV-------------------------------MIGGYTHT 312
           +  A  LFE + +RD ++WN+                               MI G+   
Sbjct: 61  MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQC 120

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
               EA+ LF ++    + PN+VT +SVL ACA LG LDLG+ +H Y  K+  K  NV +
Sbjct: 121 GKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFK-RNVHV 179

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
             +LIDMY KCG ++ A +VF  M  +T+ SW+AMI+GLAMHG+A++AL LFS MI  G+
Sbjct: 180 CNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGV 239

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
           +P+ +TF+G+L AC+H GL+D GR++F +M  DY + P+++HYGC+VDL  RAGL +EA 
Sbjct: 240 KPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAH 299

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552
             + +M +KP+  +W +LLG C+VH  ++L E   KHL EL+P N G YV++SN+YA A 
Sbjct: 300 EFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAE 359

Query: 553 RWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE 612
           RW+D A +R  + D+G+KK  G SSI V  VVHEF+ GD+ HPQ++ I ++ D++   ++
Sbjct: 360 RWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLLVKMK 419

Query: 613 KSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHS 672
           + G+ P TS VL DM+E+ KE  L  HSEKLA+ +GL++T  GT IRI+KNLRVC +CH+
Sbjct: 420 RRGYAPKTSVVLLDMEEKEKEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRVCEDCHA 479

Query: 673 ATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           A K+IS I +REII RDRNRFH F+DG CSC D+W
Sbjct: 480 ALKIISGIVSREIIVRDRNRFHCFRDGQCSCRDFW 514



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 112/330 (33%), Positives = 173/330 (52%), Gaps = 30/330 (9%)

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           M L   +P+T+T  F+LK+C K+S +  GK IH    KLG  S+ F+   ++N+Y   GE
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGE 60

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP----------------- 223
           +  A L+F K   RDAV++  +I   A RG +D A   F  MP                 
Sbjct: 61  MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQC 120

Query: 224 ------------IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
                       + +E   PNE TVV+VL+ACA +G L+LG  V       G   N+HV 
Sbjct: 121 GKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVC 180

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N LIDMY KCG L  AR +F  +E+R V+SW+ MI G       +EAL LF +M++  ++
Sbjct: 181 NTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVK 240

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           PN VTF+ +L AC+++G +D G+   A +  ++  +  +  +  ++D++++ G ++ A +
Sbjct: 241 PNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHE 300

Query: 392 VFDGMGYK-TLASWNAMISGLAMHGKADKA 420
               M  K     W A++ G  +H   D A
Sbjct: 301 FILSMPIKPNGVVWGALLGGCKVHKNIDLA 330



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 146/303 (48%), Gaps = 37/303 (12%)

Query: 39  KCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIW 98
           K +++ N K +H    K G  +  F  + ++ +  +   G++  A+L+FE + + + V W
Sbjct: 22  KLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLC--GEMGDAMLLFEKMPQRDAVTW 79

Query: 99  NNIIRGHSLSSSPVVAIKFYVRM----------ILSGFV--------------------- 127
           N +I   +       A  F++RM          ++SGFV                     
Sbjct: 80  NIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVR 139

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           PN  T   +L +CA +  +  G+ +H +  K G + +  V  +LI+MY + G LE+AR V
Sbjct: 140 PNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRV 199

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
           F +   R  VS++A+I G A  G  ++A  LF EM   +    PN  T + +L AC+HMG
Sbjct: 200 FYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMI--KLGVKPNGVTFIGLLHACSHMG 257

Query: 248 SLELG-NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVM 305
            ++ G  +  S+   +G+   +     ++D++S+ G L +A +   S+  K + + W  +
Sbjct: 258 LIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGAL 317

Query: 306 IGG 308
           +GG
Sbjct: 318 LGG 320


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 245/663 (36%), Positives = 386/663 (58%), Gaps = 8/663 (1%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           KQ+H+ +I+ G     F  +  + +   S  G+L Y + +F+ + + N V W +II G +
Sbjct: 95  KQLHAMLIRGGCLPNTFLSNHFLNL--YSKCGELDYTIKLFDKMSQRNMVSWTSIITGFA 152

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +S    A+  + +M + G +   +    +L++C  + AI  G Q+H  V+K G   + F
Sbjct: 153 HNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELF 212

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V ++L +MY++ GEL  A   F +   +DAV +T++I G+   G  D  + L   M +  
Sbjct: 213 VGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNG--DFKKALTAYMKMVT 270

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           ++   ++  + + LSAC+ + +   G  + + I   G      + NAL DMYSK GD+V 
Sbjct: 271 DDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVS 330

Query: 287 ARDLFE-SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
           A ++F+   +   ++S   +I GY      ++AL  F  + +  IEPN+ TF S++ ACA
Sbjct: 331 ASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACA 390

Query: 346 YLGALDLGKWIHAYIDK-NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
               L+ G  +H  + K N ++   VS  ++L+DMY KCG    + Q+FD +      +W
Sbjct: 391 NQAKLEHGSQLHGQVVKFNFKRDPFVS--STLVDMYGKCGLFDHSIQLFDEIENPDEIAW 448

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
           N ++   + HG    A+  F+ MI  GL+P+ +TFV +L  C+HAG+++ G  YF++M +
Sbjct: 449 NTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEK 508

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGE 524
            Y + PK +HY C++DLLGRAG   EAE  +  M  +P+   W S LGAC++HG +E  +
Sbjct: 509 IYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAK 568

Query: 525 SVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVV 584
             A  L++LEPEN GA+VLLSN+YA   +W+DV ++R  + D  M K+PG S +++ +  
Sbjct: 569 FAADKLMKLEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNKT 628

Query: 585 HEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLA 644
           H F V D  HPQ K IYE LD +   +++ G+VP T  VL DMD+  KE  L +HSE++A
Sbjct: 629 HVFGVEDWSHPQKKEIYEKLDNLLDQIKRIGYVPQTESVLIDMDDNLKEKLLHYHSERIA 688

Query: 645 IAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCN 704
           +A+ L++   G  I + KNLRVC +CHSA K ISK+  R II RD +RFHHF +G+CSC 
Sbjct: 689 VAFSLLTCPTGMPIIVKKNLRVCSDCHSALKFISKVTERNIIVRDISRFHHFSNGSCSCG 748

Query: 705 DYW 707
           DYW
Sbjct: 749 DYW 751



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 125/410 (30%), Positives = 218/410 (53%), Gaps = 9/410 (2%)

Query: 112 VVAIKFYVRMILSGF-VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTS 170
           +++  F   +  SG  + +T T   ++++ A+   +++GKQ+HA +++ G   + F+   
Sbjct: 56  IISFSFLKNLFGSGHKLSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNH 115

Query: 171 LINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV 230
            +N+Y++ GEL+    +F+K S R+ VS+T++ITG+A      +A   F +M I  E  +
Sbjct: 116 FLNLYSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGE--I 173

Query: 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDL 290
             +  + +VL AC  +G+++ G  V  L+   G G  L V + L DMYSKCG+L  A   
Sbjct: 174 ATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKA 233

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350
           FE +  +D + W  MI G+    D+K+AL  + +M+  ++  +     S L AC+ L A 
Sbjct: 234 FEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKAS 293

Query: 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD-GMGYKTLASWNAMIS 409
             GK +HA I K   +     +  +L DMY+K G++ +A  VF       ++ S  A+I 
Sbjct: 294 SFGKSLHATILKLGFEYETF-IGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIID 352

Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ-DYKI 468
           G     + +KALS F  +   G++P++ TF  ++ AC +   L+ G Q    +++ ++K 
Sbjct: 353 GYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKR 412

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
            P +     +VD+ G+ GLFD +  L   +E  PD   W +L+G    HG
Sbjct: 413 DPFVS--STLVDMYGKCGLFDHSIQLFDEIE-NPDEIAWNTLVGVFSQHG 459



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 161/361 (44%), Gaps = 36/361 (9%)

Query: 230 VPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARD 289
           + +  TV  ++   A    L  G  + +++   G   N  ++N  +++YSKCG+L     
Sbjct: 72  LSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIK 131

Query: 290 LFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA 349
           LF+ + +R+++SW  +I G+ H S ++EAL  F QM             SVL AC  LGA
Sbjct: 132 LFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGA 191

Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
           +  G  +H  + K       + + ++L DMY+KCG +  A + F+ M  K    W +MI 
Sbjct: 192 IQFGTQVHCLVVKCGFGC-ELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMID 250

Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN-----------HAGLLDIGRQY 458
           G   +G   KAL+ + +M+ + +  D       LSAC+           HA +L +G +Y
Sbjct: 251 GFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEY 310

Query: 459 ----FNAMIQDYKISPKLQ--------HYGC-----MVDLLGRAGLFDEAEALLKTM--- 498
                NA+   Y  S  +         H  C     +  ++      D+ E  L T    
Sbjct: 311 ETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDL 370

Query: 499 ---EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE-PENPGAYVLLSNMYAGAGRW 554
               ++P+   +TSL+ AC    +LE G  +   +++     +P     L +MY   G +
Sbjct: 371 RRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLF 430

Query: 555 D 555
           D
Sbjct: 431 D 431



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 90/200 (45%), Gaps = 8/200 (4%)

Query: 35  ALLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           +L+  C N   ++   Q+H Q++K       F  S L+++      G   +++ +F+ I 
Sbjct: 384 SLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDM--YGKCGLFDHSIQLFDEIE 441

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
            P+++ WN ++   S       AI+ +  MI  G  PN  TF  +LK C+    + +G  
Sbjct: 442 NPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLN 501

Query: 152 IHAHVLKL-GLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-DAVSYTALITGYASR 209
             + + K+ G+      ++ +I++  + G+L+ A    N      +   + + +      
Sbjct: 502 YFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIH 561

Query: 210 GYLDDARQLFDE-MPIREEN 228
           G ++ A+   D+ M +  EN
Sbjct: 562 GDMERAKFAADKLMKLEPEN 581


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  474 bits (1219), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 262/678 (38%), Positives = 403/678 (59%), Gaps = 13/678 (1%)

Query: 35  ALLSKCTNMQ---NIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           +L+ +C  ++   +I ++ S  +K G H++    +KLI+  A    G + YA  VF+ + 
Sbjct: 82  SLIQQCIGIKSITDITKIQSHALKRGFHHS--LGNKLID--AYLKCGSVVYARKVFDEVP 137

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             + V WN++I  +  +     AI  Y RM+  G +P+ +TF  + K+ + +  + EG++
Sbjct: 138 HRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQR 197

Query: 152 IHAHVLKLGLE-SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            H   + LG+  S+ FV ++L++MYA+ G++  ARLV ++   +D V +TALI GY+  G
Sbjct: 198 AHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHG 257

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
              ++ Q+F  M   ++    NE T+ +VL  C ++  L  G  +  LI   GL S +  
Sbjct: 258 EDGESLQVFRNMT--KKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVAS 315

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
             +L+ MY +CG +  +  +F+     + ++W  +I G       + AL+ FRQML+S+I
Sbjct: 316 QTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSI 375

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
            PN  T  SVL AC+ L  L+ GK IHA + K    ++   +  +LID Y KCG+ + A 
Sbjct: 376 TPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKY-VGAALIDFYGKCGSTEIAR 434

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
            VF+G+    + S N+MI   A +G   +AL LFS M   GL+P+++T++GVLSACN+AG
Sbjct: 435 SVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAG 494

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           LL+ G   F++      I     HY CMVDLLGRAG   EAE L+  + +  D  IW +L
Sbjct: 495 LLEEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNI-SDVVIWRTL 553

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           L ACR+HG +E+ + V   +++L PE+ G +VLLSN+YA  G W  V  +++ + +  +K
Sbjct: 554 LSACRIHGDVEMAKRVMNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLK 613

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           K P  S ++V   +H F+ GD  HP  + I E L+E+   +++ G+VPDT  VL D+DEE
Sbjct: 614 KNPAMSWVDVEREIHTFMAGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEE 673

Query: 631 WKEGALSHHSEKLAIAYGL-ISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
            K  +L +HSEKLA+A+ L  S    TTIRI+KNLRVCG+CH+  K +SKI  R+IIARD
Sbjct: 674 KKIRSLYYHSEKLAVAFALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARD 733

Query: 690 RNRFHHFKDGNCSCNDYW 707
             RFHHF++G CSC DYW
Sbjct: 734 VKRFHHFRNGLCSCGDYW 751


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  474 bits (1219), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 256/689 (37%), Positives = 397/689 (57%), Gaps = 52/689 (7%)

Query: 23  PPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSY 82
           P    LQN+  L L +K  N+ + + +  ++ +  + +    LS      A S  G++  
Sbjct: 55  PTDTFLQNRL-LHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLS------AYSKSGNVED 107

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
              VF+ +   + V +N +I G S +     A++F+VRM   GF    YT   +L +C++
Sbjct: 108 LRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQ 167

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
           +  I  GKQIH  ++   L    FV  +L NMYA+ G L+ AR +F++   ++ VS+ ++
Sbjct: 168 LLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSM 227

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
           I+GY   G  +   +LF EM  +    +P++ T+  +LSA                    
Sbjct: 228 ISGYLQNGQPETCTKLFCEM--QSSGLMPDQVTISNILSA-------------------- 265

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
                          Y +CG + +A   F  I+++D + W  M+ G       ++AL+LF
Sbjct: 266 ---------------YFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLF 310

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA---YIDKNHQKLNNVSLWTSLIDM 379
           R+ML  N+ P++ T  SV+ +CA L +L  G+ +H        +H  L    + ++L+DM
Sbjct: 311 REMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLL----VSSALVDM 366

Query: 380 YAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439
           Y+KCG    A  VF  M  + + SWN+MI G A +GK  +AL+L+  M+ E L+PD+ITF
Sbjct: 367 YSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITF 426

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME 499
           VGVLSAC HAGL++ G+ YF ++ + + ++P   HY CM++LLGRAG  D+A  L+K+M 
Sbjct: 427 VGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMT 486

Query: 500 MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559
            +P+  IW++LL  CR++  +  GE  A+HL EL+P N G Y++LSN+YA  GRW DVA 
Sbjct: 487 FEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAA 546

Query: 560 IRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPD 619
           +R+ + +  +KK    S IE+ + VH+F+  D+ H +++ IYE L+ +   L++SGF PD
Sbjct: 547 VRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETEQIYEELNRLIKKLQESGFTPD 606

Query: 620 TSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTT-IRIVKNLRVCGNCHSATKLIS 678
           T+ VL+D+ EE K  ++ +HSEKLA+A+ LI    G T IRI+KN+RVCG+CH   K +S
Sbjct: 607 TNLVLHDVVEEEKFDSICYHSEKLALAFWLIKKPHGRTPIRIMKNIRVCGDCHVFMKFVS 666

Query: 679 KIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           KI  R II RD NRFHHF +G CSC D W
Sbjct: 667 KIIRRPIILRDINRFHHFIEGRCSCKDSW 695



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 94/228 (41%), Gaps = 35/228 (15%)

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
           L S    N  ++  +L  C     +   K +  ++D +  +  +  L   L+ +YAK GN
Sbjct: 14  LYSRGTANSESYTRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFLQNRLLHLYAKSGN 73

Query: 386 IKAAEQVFDGMGYKTLASWNAMIS-------------------------------GLAMH 414
           +  A  +FD M  + + SWNAM+S                               G + +
Sbjct: 74  LSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGN 133

Query: 415 GKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR-QYFNAMIQDYKISPKLQ 473
           G + +AL  F RM  EG +  D T V VL AC+   LLDI R +  +  I    +   + 
Sbjct: 134 GCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQ--LLDIKRGKQIHGRIVATSLGESVF 191

Query: 474 HYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
            +  + ++  + G  D+A  L   M +  +   W S++     +G+ E
Sbjct: 192 VWNALTNMYAKCGALDQARWLFDRM-VNKNVVSWNSMISGYLQNGQPE 238


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 254/677 (37%), Positives = 386/677 (57%), Gaps = 38/677 (5%)

Query: 35  ALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEI-CAVSPFGDLSYALLVFETI 90
           +LLS C +   + N KQ HS  IK G+ +       L+++    S         L +  +
Sbjct: 357 SLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQL 416

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
              N+                  + + + +M + G VPN +T+P ILK+C  + A   G+
Sbjct: 417 DNLNK------------------SFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGE 458

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           QIH  VLK G + + +V + LI+MYA++G+L+ A  +F +    D VS+TA+I GY    
Sbjct: 459 QIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHD 518

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
              +A  LF EM  +++    +     + +SACA + +L+ G  + +     G   +L +
Sbjct: 519 KFTEALNLFKEM--QDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSI 576

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            NAL+ +Y++CG + +A   F+ I  +D +SWN ++ G+  +  ++EAL +F QM ++ +
Sbjct: 577 GNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGL 636

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           E N  TF S + A A +  + +GK IH  I K     +   +  +LI +YAKCG I    
Sbjct: 637 EINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYD-SETEVSNALITLYAKCGTIDDI- 694

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
                       SWN+MI+G + HG   +AL LF  M    + P+ +TFVGVLSAC+H G
Sbjct: 695 ------------SWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVG 742

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L+D G  YF +M + + + PK +HY C+VDLLGR+GL   A+  ++ M ++PDA +W +L
Sbjct: 743 LVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTL 802

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           L AC VH  +++GE  A HLLELEP++   YVL+SNMYA +G+WD     R  + D+G+K
Sbjct: 803 LSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVK 862

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           K PG S +EV + VH F  GD+ HP++  IYE L  +D    ++G+VP  + +L D +  
Sbjct: 863 KEPGRSWVEVDNSVHAFFAGDQNHPRADMIYEYLRGLDFRAAENGYVPRCNSLLSDAEIR 922

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            K+     HSE+LAIA+GL+S    T + + KNLRVC +CH+  K +SKI +R II RD 
Sbjct: 923 QKDPTEIIHSERLAIAFGLLSLTSSTPLYVFKNLRVCEDCHNWIKHVSKITDRVIIVRDS 982

Query: 691 NRFHHFKDGNCSCNDYW 707
            RFHHFK G+CSC DYW
Sbjct: 983 YRFHHFKVGSCSCKDYW 999



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 130/448 (29%), Positives = 215/448 (47%), Gaps = 41/448 (9%)

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
           FGDL+ A+ VF+ +   +   WN I                + RM+      +   F  +
Sbjct: 110 FGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVV 169

Query: 137 LKSCAKISAISEG--KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
           L+ C+  +A+S    +QIHA  +  G ES  F+   LI++Y +NG L SA+ VF     R
Sbjct: 170 LRGCSG-NAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKAR 228

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
           D+VS+ A+I+G +  GY ++A  LF ++                VLSAC  +   E G  
Sbjct: 229 DSVSWVAMISGLSQNGYEEEAMLLFCQI----------------VLSACTKVEFFEFGKQ 272

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           +  L+   G  S  +V NAL+ +YS+ G+L  A  +F  + +RD +S+N +I G      
Sbjct: 273 LHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGY 332

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
              AL LF++M     +P+ VT  S+L ACA +GAL  GK  H+Y  K     +++ +  
Sbjct: 333 INRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMT-SDIVVEG 391

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
           SL+D+Y KC +IK A + F  + Y  L + N             K+  +F++M  EG+ P
Sbjct: 392 SLLDLYVKCSDIKTAHEFF--LCYGQLDNLN-------------KSFQIFTQMQIEGIVP 436

Query: 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY--GCMVDLLGRAGLFDEAE 492
           +  T+  +L  C   G  D+G Q    ++   K   +   Y    ++D+  + G  D A 
Sbjct: 437 NQFTYPSILKTCTTLGATDLGEQIHTQVL---KTGFQFNVYVSSVLIDMYAKHGKLDHAL 493

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRL 520
            + + ++ + D   WT+++     H + 
Sbjct: 494 KIFRRLK-ENDVVSWTAMIAGYTQHDKF 520



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 116/463 (25%), Positives = 208/463 (44%), Gaps = 58/463 (12%)

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
           G   N+ TF ++L+ C    +  +G +                   LI+ Y   G+L  A
Sbjct: 76  GVRANSQTFLWLLEGCLNSRSFYDGLK-------------------LIDFYLAFGDLNCA 116

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
             VF++  +R    +  +   + +   +     LF  M  +   F  +E     VL  C+
Sbjct: 117 VNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEF--DERIFAVVLRGCS 174

Query: 245 -HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN 303
            +  S      + +     G  S+  + N LID+Y K G L  A+ +FE+++ RD +SW 
Sbjct: 175 GNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWV 234

Query: 304 VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363
            MI G +     +EA++LF Q+              VL AC  +   + GK +H  + K 
Sbjct: 235 AMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFEFGKQLHGLVLKQ 280

Query: 364 HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSL 423
               +   +  +L+ +Y++ GN+ +AEQ+F  M  +   S+N++ISGLA  G  ++AL+L
Sbjct: 281 GFS-SETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALAL 339

Query: 424 FSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL-- 481
           F +M  +  +PD +T   +LSAC   G L  G+Q+ +  I+   ++  +   G ++DL  
Sbjct: 340 FKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKA-GMTSDIVVEGSLLDLYV 398

Query: 482 --------------LGRAGLFDEAEALLKTMEMK---PDAAIWTSLLGACRVHGRLELGE 524
                          G+    +++  +   M+++   P+   + S+L  C   G  +LGE
Sbjct: 399 KCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGE 458

Query: 525 SVAKHLLELEPE-NPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
            +   +L+   + N     +L +MYA  G+ D    I  RL +
Sbjct: 459 QIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKE 501



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 144/336 (42%), Gaps = 44/336 (13%)

Query: 220 DEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYS 279
           DE+P  +EN +   ++ +  L      G          L+EG     + +    LID Y 
Sbjct: 50  DEIP-EKENEMDGNASGIGYLHLMEQHGVRANSQTFLWLLEGCLNSRSFYDGLKLIDFYL 108

Query: 280 KCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS 339
             GDL  A ++F+ +  R +  WN +   +           LFR+ML  N+E ++  F  
Sbjct: 109 AFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAV 168

Query: 340 VLPACAYLGALDLGKWI-HAYIDKNHQKLNNVSLWTS------LIDMYAKCGNIKAAEQV 392
           VL  C+       G  +   ++++ H K       +S      LID+Y K G + +A++V
Sbjct: 169 VLRGCS-------GNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKV 221

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMI---------------------GEG 431
           F+ +  +   SW AMISGL+ +G  ++A+ LF +++                      +G
Sbjct: 222 FENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLKQG 281

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
              +      +++  + +G L    Q F+ M Q  ++S     Y  ++  L + G  + A
Sbjct: 282 FSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVS-----YNSLISGLAQQGYINRA 336

Query: 492 EALLKTMEM---KPDAAIWTSLLGACRVHGRLELGE 524
            AL K M +   KPD     SLL AC   G L  G+
Sbjct: 337 LALFKKMNLDCQKPDCVTVASLLSACASVGALPNGK 372


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 240/596 (40%), Positives = 366/596 (61%), Gaps = 9/596 (1%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L    KC    ++KQ  S +I +GL +  F LS ++     S   DL Y LL+F+ +  P
Sbjct: 12  LCCFHKCGTFDHLKQTTSILITSGLAHHTFFLSDILR----SATKDLGYTLLLFDRLATP 67

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
              +WN IIRG S SS P + +  Y R+   G +P+ +TFP +LK+ +K+       Q +
Sbjct: 68  YIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN-ENPFQFY 126

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
           AH++K GL+ D FV  SL++ +A  G ++ +R +F +++ +D VS+TALI G    G   
Sbjct: 127 AHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAV 186

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL-IEGHGLGSNLHVTN 272
           +A + F EM  R      +E T+V+VL A A +  +  G WV    +E   +  +++V +
Sbjct: 187 EALECFVEM--RSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGS 244

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           AL+DMYSKCG    A  +F  +  R+++SW  +I GY   + YKEAL +F++M+   IEP
Sbjct: 245 ALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEP 304

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N  T  S L ACA LG+LD G+W+H Y+D++   LN+  L T+L+DMY+KCG +  A  V
Sbjct: 305 NQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNS-KLGTALVDMYSKCGCVDEALLV 363

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F+ +  K +  W AMI+GLAM G A  +L+LFS+MI   +QP+ +TF+GVLSAC H GL+
Sbjct: 364 FEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLV 423

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           D G + F  MI DY++ P + HYGCMVDLLGRAG  +EA   +++M M+P   +W +L  
Sbjct: 424 DEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFS 483

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
            C +H   ELGE +  HL++L+P + G Y+LL+N+Y+   +W+  A +R  +  KG+ K 
Sbjct: 484 GCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKS 543

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
           PGCS IEV  V+HEF+  DK H +S ++Y ML+ + A L+ + +  D++ + + +D
Sbjct: 544 PGCSWIEVNGVIHEFIAFDKSHTESINVYMMLESVSAQLKLATYALDSNLLTFTID 599


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 255/670 (38%), Positives = 401/670 (59%), Gaps = 25/670 (3%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           ++VH+Q +K G  +T F  + L+ + A    G +  A +VF  +   + V WN ++ G  
Sbjct: 225 RRVHAQSVKFGCCSTVFVCNSLMNMYA--KCGLVEEARVVFCGMETRDMVSWNTLMAGLV 282

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
           L+   + A++ +     S  +    T+  ++K CA I  +   +Q+H+ VLK G  S   
Sbjct: 283 LNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGN 342

Query: 167 VHTSLINMYAQNGELESARLVFN-KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           V T+L++ Y++ G+L +A  +F   S  ++ VS+TA+I G    G +  A  LF  M  R
Sbjct: 343 VMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRM--R 400

Query: 226 EENFVPNESTVVTVLSACA-------HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMY 278
           E+   PN+ T  T+L+A         H   ++  N+ C+ I G           AL+  Y
Sbjct: 401 EDGVAPNDFTYSTILTASVASLPPQIHAQVIKT-NYECTSIVG----------TALLASY 449

Query: 279 SKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
           SK  +  +A  +F+ I+++DV+SW+ M+  Y    D   A  +F +M    ++PN+ T  
Sbjct: 450 SKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTIS 509

Query: 339 SVLPACAY-LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG 397
           SV+ ACA     +DLG+  HA I   H+  + + + ++L+ MYA+ G+I++A+ +F+   
Sbjct: 510 SVIDACASPTAGVDLGRQFHA-ISIKHRCHDALCVSSALVSMYARKGSIESAQCIFERQT 568

Query: 398 YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
            + L SWN+M+SG A HG + KAL +F +M  EG++ D +TF+ V+  C HAGL++ G++
Sbjct: 569 DRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQR 628

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
           YF++M +DY I+P ++HY CMVDL  RAG  DEA +L++ M       +W +LLGAC+VH
Sbjct: 629 YFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGACKVH 688

Query: 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577
             +ELG+  A+ LL LEP +   YVLLSN+Y+ AG+W +   +R  ++ K +KK  GCS 
Sbjct: 689 KNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVKKEAGCSW 748

Query: 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALS 637
           I++ + VH F+  DK HP S+ IY  L  +   L++ G+ PDTS  L+++ EE KE  L+
Sbjct: 749 IQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTKLKQEGYCPDTSFALHEVAEEQKEAMLA 808

Query: 638 HHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFK 697
            HSE+LA+A+GLI+T PG  + I KNLRVCG+CH+  K++SKI +REI+ RD +RFHHF 
Sbjct: 809 MHSERLALAFGLIATPPGAPLHIFKNLRVCGDCHTVIKMVSKIEDREIVMRDCSRFHHFN 868

Query: 698 DGNCSCNDYW 707
            G CSC D+W
Sbjct: 869 SGVCSCGDFW 878



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 137/436 (31%), Positives = 221/436 (50%), Gaps = 13/436 (2%)

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145
           VFE + + N V W +++ G+    +    ++ + RM   G  PN+ TF  +L   A    
Sbjct: 161 VFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGM 220

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
           +  G+++HA  +K G  S  FV  SL+NMYA+ G +E AR+VF     RD VS+  L+ G
Sbjct: 221 VDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAG 280

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
               G+  +A QLF +   R    +  +ST  TV+  CA++  L L   + S +   G  
Sbjct: 281 LVLNGHDLEALQLFHDS--RSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFH 338

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
           S  +V  AL+D YSK G L  A D+F  +   ++V+SW  MI G     D   A  LF +
Sbjct: 339 SYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSR 398

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           M +  + PND T+ ++L A        L   IHA + K + +  ++ + T+L+  Y+K  
Sbjct: 399 MREDGVAPNDFTYSTILTA----SVASLPPQIHAQVIKTNYECTSI-VGTALLASYSKLC 453

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
           N + A  +F  +  K + SW+AM++  A  G +D A ++F +M   GL+P++ T   V+ 
Sbjct: 454 NTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVID 513

Query: 445 ACNH--AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
           AC    AG +D+GRQ F+A+   ++    L     +V +  R G  + A+ + +  +   
Sbjct: 514 ACASPTAG-VDLGRQ-FHAISIKHRCHDALCVSSALVSMYARKGSIESAQCIFER-QTDR 570

Query: 503 DAAIWTSLLGACRVHG 518
           D   W S+L     HG
Sbjct: 571 DLVSWNSMLSGYAQHG 586



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/313 (34%), Positives = 166/313 (53%), Gaps = 7/313 (2%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLE-SDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
           +LK C  +     GKQ+H   ++ G +  D  V TSL++MY +   +   R VF     R
Sbjct: 109 VLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKR 168

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
           + V++T+L+TGY   G L D  +LF  M  R E   PN  T  +VLS  A  G ++LG  
Sbjct: 169 NVVTWTSLLTGYIQDGALSDVMELFFRM--RAEGVWPNSVTFASVLSVVASQGMVDLGRR 226

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           V +     G  S + V N+L++MY+KCG + +AR +F  +E RD++SWN ++ G      
Sbjct: 227 VHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGH 286

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI-DKNHQKLNNVSLW 373
             EAL LF     S       T+ +V+  CA +  L L + +H+ +  +      NV   
Sbjct: 287 DLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNV--M 344

Query: 374 TSLIDMYAKCGNIKAAEQVFDGM-GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
           T+L+D Y+K G +  A  +F  M G + + SW AMI+G   +G    A +LFSRM  +G+
Sbjct: 345 TALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGV 404

Query: 433 QPDDITFVGVLSA 445
            P+D T+  +L+A
Sbjct: 405 APNDFTYSTILTA 417



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/433 (25%), Positives = 202/433 (46%), Gaps = 24/433 (5%)

Query: 184 ARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC 243
           AR  F++   R+ + +   +  +A RG +  A   F ++  R          +V VL  C
Sbjct: 57  ARQAFDEIPHRNTLDHA--LFDHARRGSVHQALDHFLDVH-RCHGGRVGGGALVGVLKVC 113

Query: 244 AHMGSLELGNWVCSLI--EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVIS 301
             +    LG  +  L    GH  G ++ V  +L+DMY K   +V  R +FE++ KR+V++
Sbjct: 114 GSVPDRVLGKQLHGLCIRCGHDRG-DVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVT 172

Query: 302 WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361
           W  ++ GY       + + LF +M    + PN VTF SVL   A  G +DLG+ +HA   
Sbjct: 173 WTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSV 232

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421
           K     + V +  SL++MYAKCG ++ A  VF GM  + + SWN +++GL ++G   +AL
Sbjct: 233 K-FGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEAL 291

Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG----C 477
            LF             T+  V+  C +   L + RQ  +++++          YG     
Sbjct: 292 QLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLK-----RGFHSYGNVMTA 346

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537
           ++D   +AG    A  +   M    +   WT+++  C  +G + L  ++   + E +   
Sbjct: 347 LMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMRE-DGVA 405

Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQS 597
           P  +   + + A       VA++  +++ + +K    C+SI VG+ +           ++
Sbjct: 406 PNDFTYSTILTA------SVASLPPQIHAQVIKTNYECTSI-VGTALLASYSKLCNTEEA 458

Query: 598 KHIYEMLDEIDAL 610
             I++M+D+ D +
Sbjct: 459 LSIFKMIDQKDVV 471


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 253/591 (42%), Positives = 356/591 (60%), Gaps = 26/591 (4%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           IL+   K   ++  KQ+HA +L  GL    +  + L+N  ++      A  +FN      
Sbjct: 8   ILQKLQKCHNLNTLKQVHAQMLTTGLSFQTYYLSHLLNTSSKFAS-TYAFTIFNHIPNPT 66

Query: 196 AVSYTALITGYASRG-YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
              Y  LI+        +  A  L++ + +  +   PN  T  ++  ACA    L+ G  
Sbjct: 67  LFLYNTLISSLTHHSDQIHLAFSLYNHI-LTHKTLQPNSFTFPSLFKACASHPWLQHG-- 123

Query: 255 VCSLIEGHGLG-----SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309
               +  H L       +  V N+L++ Y+K G L  +R LF+ I + D+ +WN M+  Y
Sbjct: 124 --PPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAY 181

Query: 310 THTSDYK-------------EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
             ++ +              EAL LF  M  S I+PN+VT ++++ AC+ LGAL  G W 
Sbjct: 182 AQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQGAWA 241

Query: 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGK 416
           H Y+ +N+ KLN   + T+L+DMY+KCG +  A Q+FD +  +    +NAMI G A+HG 
Sbjct: 242 HGYVLRNNLKLNRF-VGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHGH 300

Query: 417 ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG 476
            ++AL L+  M  E L PD  T V  + AC+H GL++ G + F +M   + + PKL+HYG
Sbjct: 301 GNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLEHYG 360

Query: 477 CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536
           C++DLLGRAG   EAE  L+ M MKP+A +W SLLGA ++HG LE+GE+  KHL+ELEPE
Sbjct: 361 CLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIELEPE 420

Query: 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQ 596
             G YVLLSNMYA  GRW+DV  +R  + D G+ K+PG S +E+   +HEFL GDK HP 
Sbjct: 421 TSGNYVLLSNMYASIGRWNDVKRVRMLMKDHGVDKLPGFSLVEINGAMHEFLTGDKAHPF 480

Query: 597 SKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGT 656
           SK IY  + EI+  L + G  P TSEVL+D++EE KE  LS+HSE+LAIA+ LI++    
Sbjct: 481 SKEIYSKIGEINRRLLEYGHKPRTSEVLFDVEEEDKEDFLSYHSERLAIAFALIASSSSM 540

Query: 657 TIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            IRI+KNLRVCG+CH+ TKLIS  + R+II RDRNRFHHFKDG+CSC DYW
Sbjct: 541 PIRIIKNLRVCGDCHAITKLISAAYQRDIIVRDRNRFHHFKDGSCSCLDYW 591



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 133/423 (31%), Positives = 213/423 (50%), Gaps = 24/423 (5%)

Query: 30  NQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFET 89
           N P L  L KC N+  +KQVH+Q++ TGL    + LS L+     S F   +YA  +F  
Sbjct: 5   NHPILQKLQKCHNLNTLKQVHAQMLTTGLSFQTYYLSHLLN--TSSKFAS-TYAFTIFNH 61

Query: 90  IREPNQVIWNNIIRGHSLSSSPV-VAIKFYVRMIL-SGFVPNTYTFPFILKSCAKISAIS 147
           I  P   ++N +I   +  S  + +A   Y  ++      PN++TFP + K+CA    + 
Sbjct: 62  IPNPTLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACASHPWLQ 121

Query: 148 EGKQIHAHVLK-LGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGY 206
            G  +HAHVLK L    DPFV  SL+N YA+ G+L  +R +F++ S  D  ++  ++  Y
Sbjct: 122 HGPPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAY 181

Query: 207 A--------SRGYLD-----DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
           A        S  + D     +A  LF +M + +    PNE T+V ++SAC+++G+L  G 
Sbjct: 182 AQSASHVSYSTSFEDADMSLEALHLFCDMQLSQ--IKPNEVTLVALISACSNLGALSQGA 239

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTS 313
           W    +  + L  N  V  AL+DMYSKCG L  A  LF+ +  RD   +N MIGG+    
Sbjct: 240 WAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHG 299

Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
              +AL L+R M   ++ P+  T +  + AC++ G ++ G  I   +   H     +  +
Sbjct: 300 HGNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLEHY 359

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHGKADKALSLFSRMIGEGL 432
             LID+  + G +K AE+    M  K  A  W +++    +HG  +   +    +I   L
Sbjct: 360 GCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLI--EL 417

Query: 433 QPD 435
           +P+
Sbjct: 418 EPE 420


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 236/586 (40%), Positives = 365/586 (62%), Gaps = 9/586 (1%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P   T   ++ S A+ +++S+   +H  ++  G + DPF+ T LINM+++   +++AR V
Sbjct: 67  PTQQTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKV 126

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLF---DEMPIREENFVPNESTVVTVLSACA 244
           F+K+  R    + AL    A  G  +D  +L+   + M +  + F         V S C 
Sbjct: 127 FDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECL 186

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
            +  L+ G  + + I  HG G+++HV   L+DMY++ G +  A  +F+ +  ++V+SW+ 
Sbjct: 187 -VSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSA 245

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIE--PNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
           MI  Y       EAL LFR+M+ +  +  PN VT +SVL ACA   AL+ GK IHAYI +
Sbjct: 246 MIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILR 305

Query: 363 NHQKLNNV-SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421
             + L+++  + ++LI MYA+CG +++ + +FD M  K +  WN++IS   +HG   KA+
Sbjct: 306 --RGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAI 363

Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481
            +F  MI  G  P  I+F+ VL AC+H GL++ G++ F +M++++ I P ++HY CMVDL
Sbjct: 364 KIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDL 423

Query: 482 LGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541
           LGRA   DEA  +++ + ++P   +W SLLGACR+H  +EL E  +K L +LEP N G Y
Sbjct: 424 LGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFKLEPTNAGNY 483

Query: 542 VLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIY 601
           VLL+++YA A  WD+V  ++  L+ + ++KVPG S IEV   ++ F   D+ +PQ + ++
Sbjct: 484 VLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRKIYSFTSVDEFNPQGEQLH 543

Query: 602 EMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIV 661
            +L  +   +++ G+ P T  VLYD+D+E KE  +  HSEKLA+A+GLI+T  G TIRI 
Sbjct: 544 ALLVNLSNEMKQRGYTPQTKLVLYDLDQEEKERIVLGHSEKLAVAFGLINTSKGDTIRIT 603

Query: 662 KNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           KNLR+C +CHS TK ISK  +REI+ RD NRFHHFKDG CSC DYW
Sbjct: 604 KNLRLCEDCHSVTKFISKFADREIMVRDLNRFHHFKDGVCSCGDYW 649



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 114/393 (29%), Positives = 209/393 (53%), Gaps = 9/393 (2%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           VH  ++  G     F  +KLI +   S    +  A  VF+  R+    +WN + R  +L+
Sbjct: 91  VHQLLVDGGFDQDPFLATKLINM--FSELDTVDNARKVFDKTRKRTIYVWNALFRALALA 148

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK----ISAISEGKQIHAHVLKLGLESD 164
                 ++ Y RM + G   + +T+ ++LK+C      +S + +GK+IHAH+L+ G  + 
Sbjct: 149 GRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAH 208

Query: 165 PFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPI 224
             V T+L++MYA+ G +  A  VF++  +++ VS++A+I  YA  G   +A +LF EM +
Sbjct: 209 VHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMML 268

Query: 225 REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
              + VPN  T+V+VL ACA   +LE G  + + I   GL S L V +ALI MY++CG L
Sbjct: 269 NTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGKL 328

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
              + +F+ + K+DV+ WN +I  Y      ++A+ +F +M+     P+ ++F+SVL AC
Sbjct: 329 ESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGAC 388

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS- 403
           ++ G ++ GK +   + K H    +V  +  ++D+  +   +  A ++ + +  +     
Sbjct: 389 SHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKV 448

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           W +++    +H   + A     R+    L+P +
Sbjct: 449 WGSLLGACRIHCHVELAERASKRLF--KLEPTN 479



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 150/256 (58%), Gaps = 7/256 (2%)

Query: 43  MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNII 102
           +Q  K++H+ I++ G       ++ L+++ A   FG +SYA  VF+ +   N V W+ +I
Sbjct: 190 LQKGKEIHAHILRHGYGAHVHVMTTLMDMYA--RFGCVSYASAVFDEMPVKNVVSWSAMI 247

Query: 103 RGHSLSSSPVVAIKFYVRMILSGF--VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG 160
             ++ +  P  A++ +  M+L+    VPN+ T   +L++CA  +A+ +GK IHA++L+ G
Sbjct: 248 ACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRG 307

Query: 161 LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD 220
           L+S   V ++LI MYA+ G+LES +L+F++   +D V + +LI+ Y   GY   A ++F+
Sbjct: 308 LDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFE 367

Query: 221 EMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC-SLIEGHGLGSNLHVTNALIDMYS 279
           EM   +  F P+  + ++VL AC+H G +E G  +  S+++ HG+  ++     ++D+  
Sbjct: 368 EMI--DHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLG 425

Query: 280 KCGDLVKARDLFESIE 295
           +   L +A  + E + 
Sbjct: 426 RANRLDEAAKIIEDLR 441


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 256/673 (38%), Positives = 392/673 (58%), Gaps = 11/673 (1%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +L  C  + ++   ++VH  +I+ G  +    ++ LI +      GD+  A LVF+ +  
Sbjct: 201 VLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITM--YVKCGDIFSARLVFDRMPR 258

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            +++ WN +I G+  +   +  ++ +  M      P+  T   ++ +C  +     G+++
Sbjct: 259 RDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREV 318

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H +V+K G  ++  V+ SLI M++  G  + A +VF+K   +D VS+TA+I+GY   G  
Sbjct: 319 HGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLP 378

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           + A + +  M    E  VP+E T+ +VLSACA +G L+ G  +    +  GL S + V N
Sbjct: 379 EKAVETYTIM--EHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVAN 436

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           +LIDMYSKC  + KA ++F  I  ++VISW  +I G        EAL  F+QM+ S ++P
Sbjct: 437 SLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKP 495

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N VT +SVL ACA +GAL  GK IHA+  +     +   L  +L+DMY +CG ++ A   
Sbjct: 496 NSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGF-LPNALLDMYVRCGRMEPAWNQ 554

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F+    K +ASWN +++G A  GK   A+ LF +MI   + PD+ITF  +L AC+ +G++
Sbjct: 555 FNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMV 613

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
             G +YF +M   + I+P L+HY  +VDLLGRAG  ++A   +K M + PD AIW +LL 
Sbjct: 614 TDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLN 673

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           ACR++  +ELGE  A+H+ E++ ++ G Y+LL N+YA +G+WD+VA +R  + +  +   
Sbjct: 674 ACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVD 733

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
           PGCS +EV   VH FL GD  HPQ K I  +L+     +E +G          D+D   K
Sbjct: 734 PGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSRRDDIDAS-K 792

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
                 HSE+LAIA+GLI+T PGT I + KNL +C NCH+  K ISK+  R I  RD  +
Sbjct: 793 AEIFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRGISVRDTEQ 852

Query: 693 FHHFKDGNCSCND 705
           FHHFKDG CSC D
Sbjct: 853 FHHFKDGVCSCGD 865



 Score =  248 bits (633), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 179/572 (31%), Positives = 285/572 (49%), Gaps = 55/572 (9%)

Query: 28  LQNQPSLALLSKCTNMQNIKQ---VHSQIIKT----GLHNTQFALSKLIEICAVSPFGDL 80
           ++ +  +ALL  C   +   +   VHS + KT    G+      LS  +       FGDL
Sbjct: 92  VEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVR------FGDL 145

Query: 81  SYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSC 140
             A  VF  + E +   WN ++ G++ +     A+  Y RM+  G  P+ YTFP +L++C
Sbjct: 146 VEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTC 205

Query: 141 AKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYT 200
             +  ++ G+++H HV++ G ESD  V  +LI MY + G++ SARLVF++   RD +S+ 
Sbjct: 206 GGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWN 265

Query: 201 ALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE 260
           A+I+GY       +  +LF  M  RE    P+  T+ +V+SAC  +G   LG  V   + 
Sbjct: 266 AMISGYFENDVCLEGLRLFFMM--REFFVDPDLMTMTSVISACEALGDERLGREVHGYVI 323

Query: 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALM 320
             G  + + V N+LI M+S  G   +A  +F  +E +D++SW  MI GY      ++A+ 
Sbjct: 324 KTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVE 383

Query: 321 LFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMY 380
            +  M    + P+++T  SVL ACA LG LD G  +H + D+     + V +  SLIDMY
Sbjct: 384 TYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLT-SYVIVANSLIDMY 442

Query: 381 AKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFV 440
           +KC  I  A +VF  +  K + SW ++I GL ++ ++ +AL  F +MI   L+P+ +T V
Sbjct: 443 SKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMI-LSLKPNSVTLV 501

Query: 441 GVLSACNHAGLLDIGRQYF---------------NAMIQDY----KISPKLQHY-GCMVD 480
            VLSAC   G L  G++                 NA++  Y    ++ P    +  C  D
Sbjct: 502 SVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCEKD 561

Query: 481 LL------------GRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR----LELGE 524
           +             G+ GL  E    +   ++ PD   +TSLL AC   G     LE  E
Sbjct: 562 VASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFE 621

Query: 525 SVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
           S+ +H   + P N   Y  + ++   AGR +D
Sbjct: 622 SM-EHKFHIAP-NLKHYASVVDLLGRAGRLED 651


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 259/646 (40%), Positives = 372/646 (57%), Gaps = 52/646 (8%)

Query: 63  FALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI 122
           F L+K+I  C  S  GD+  AL VF  +R  N + WN+++ G  +S  P           
Sbjct: 62  FPLNKIIARCVRS--GDIDGALRVFHGMRAKNTITWNSLLIG--ISKDP----------- 106

Query: 123 LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELE 182
                                S + E  Q+   +     E D F +  +++ Y +N   E
Sbjct: 107 ---------------------SRMMEAHQLFDEIP----EPDTFSYNIMLSCYVRNVNFE 141

Query: 183 SARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSA 242
            A+  F++   +DA S+  +ITGYA RG ++ AR+LF  M         NE +   ++S 
Sbjct: 142 KAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSM------MEKNEVSWNAMISG 195

Query: 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVIS 301
               G LE  +    +    G+ +      A+I  Y K   +  A  +F+ +   +++++
Sbjct: 196 YIECGDLEKASHFFKVAPVRGVVA----WTAMITGYMKAKKVELAEAMFKDMTVNKNLVT 251

Query: 302 WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361
           WN MI GY   S  ++ L LFR ML+  I PN     S L  C+ L AL LG+ IH  + 
Sbjct: 252 WNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVS 311

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421
           K+    N+V+  TSLI MY KCG +  A ++F+ M  K + +WNAMISG A HG ADKAL
Sbjct: 312 KS-TLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKAL 370

Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481
            LF  MI   ++PD ITFV VL ACNHAGL++IG  YF +M++DYK+ P+  HY CMVDL
Sbjct: 371 CLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDL 430

Query: 482 LGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541
           LGRAG  +EA  L+++M  +P AA++ +LLGACRVH  +EL E  A+ LL+L  +N   Y
Sbjct: 431 LGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGY 490

Query: 542 VLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIY 601
           V L+N+YA   RW+DVA +R R+ +  + KVPG S IE+ + VH F   D++HP+   I+
Sbjct: 491 VQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIH 550

Query: 602 EMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIV 661
           + L E++  ++ +G+ P+    L++++EE KE  L  HSEKLA+A+G I    G+ I++ 
Sbjct: 551 KKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVF 610

Query: 662 KNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           KNLR+CG+CH A K IS+I  REII RD  RFHHFKDG+CSC DYW
Sbjct: 611 KNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 7/156 (4%)

Query: 33  SLALL--SKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEI-CAVSPFGDLSYALLVFET 89
           S ALL  S+ + +Q  +Q+H  + K+ L N   AL+ LI + C     GD   A  +FE 
Sbjct: 288 SSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGD---AWKLFEV 344

Query: 90  IREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG 149
           +++ + V WN +I G++   +   A+  +  MI +   P+  TF  +L +C     ++ G
Sbjct: 345 MKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIG 404

Query: 150 -KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
                + V    +E  P  +T ++++  + G+LE A
Sbjct: 405 MAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEA 440


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 239/573 (41%), Positives = 345/573 (60%), Gaps = 49/573 (8%)

Query: 20  SSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGD 79
           SS PP       P L+     T++  + Q H+ I+K+GL ++ FA S+LI   + +    
Sbjct: 3   SSFPP------PPILSFAEMATSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQ 56

Query: 80  -LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILK 138
            + YA  +F  I  PN  +WN IIR ++ S +P  A+  + +M+ +  +P+ YTF F LK
Sbjct: 57  AIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALK 116

Query: 139 SCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVS 198
           SC   S + EG+QIH HVLK GL  D F+  +LI++YA  G +E AR + ++   RD VS
Sbjct: 117 SCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVS 176

Query: 199 YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           + AL++ YA RG ++ A  LFDEM  R                                 
Sbjct: 177 WNALLSAYAERGLMELACHLFDEMTER--------------------------------- 203

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
                   N+   N +I  Y   G L +AR +F     ++V+SWN MI GY+H   + E 
Sbjct: 204 --------NVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEV 255

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
           L+LF  M  + ++P++ T +SVL ACA++GAL  G+W+HAYIDKN   ++   + T+L+D
Sbjct: 256 LVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGF-VATALVD 314

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
           MY+KCG+I+ A +VF+    K +++WN++ISGL+ HG    AL +FS M+ EG +P+++T
Sbjct: 315 MYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVT 374

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
           FV VLSAC+ AGLLD GR+ FN M+  + I P ++HYGCMVDLLGR GL +EAE L++ M
Sbjct: 375 FVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKM 434

Query: 499 EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVA 558
             K  + +W SLLGACR HG +EL E VA+ LLEL P+   ++V LSNMYA  GRW DV 
Sbjct: 435 PQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVM 494

Query: 559 TIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGD 591
            +R ++  +G++K PGCS IEV   V+EFL G+
Sbjct: 495 EVRQKMRAQGVRKDPGCSMIEVDGTVYEFLAGE 527


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 247/652 (37%), Positives = 377/652 (57%), Gaps = 31/652 (4%)

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKIS 144
           +F ++ E + V +N +I G S + SP  +++ Y  ++    V P   T   ++   + +S
Sbjct: 101 LFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALS 160

Query: 145 AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
             + G  +H  VL+LG  +  FV + L++MYA+ G +  AR VF +   +  V Y  LIT
Sbjct: 161 DRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLIT 220

Query: 205 GYASRGYLDDARQLFDEM-----------------------------PIREENFVPNEST 235
           G      ++DA+ LF  M                              +R E    ++ T
Sbjct: 221 GLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYT 280

Query: 236 VVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE 295
             ++L+AC  + + E G  + + I       N+ V +AL+DMYSKC  +  A  +F  + 
Sbjct: 281 FGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMT 340

Query: 296 KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKW 355
            R++ISW  MI GY   +  +EA+  F +M    I+P+D T  SV+ +CA L +L+ G  
Sbjct: 341 CRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQ 400

Query: 356 IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHG 415
            H  +      +  +++  +L+ +Y KCG+I+ A ++FD M +    SW A+++G A  G
Sbjct: 401 FHC-LALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFG 459

Query: 416 KADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY 475
           KA + + LF +M+  GL+PD +TF+GVLSAC+ AGL++ G  YF++M +D+ I P   HY
Sbjct: 460 KAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHY 519

Query: 476 GCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEP 535
            CM+DL  R+G F EAE  +K M   PDA  W +LL +CR+ G +E+G+  A++LLE +P
Sbjct: 520 TCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDP 579

Query: 536 ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHP 595
           +NP +YVLL +M+A  G+W +VA +R  + D+ +KK PGCS I+  + VH F   D+ HP
Sbjct: 580 QNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHP 639

Query: 596 QSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPG 655
            S  IYE L+ +++ + + G+ PD S VL+D+ +  K   +SHHSEKLAIA+GLI     
Sbjct: 640 FSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFVPQE 699

Query: 656 TTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
             IRIVKNLRVC +CH+ATK ISKI  R+I+ RD  RFH F DG CSC D+W
Sbjct: 700 MPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 128/423 (30%), Positives = 203/423 (47%), Gaps = 67/423 (15%)

Query: 152 IHAHVLKLGLESDP-FVHTSLINMYAQNGELESARLVFNK-------------SSL---- 193
           +H  +LK  L++ P F+   L+  YA++G L  AR VF++             S+L    
Sbjct: 34  VHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSR 93

Query: 194 --------------RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTV 239
                         RDAVSY ALITG++S G    + QL+  + +REE+  P   T+  +
Sbjct: 94  LVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRAL-LREESVRPTRITLSAM 152

Query: 240 LSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE---- 295
           +   + +    LG+ V   +   G G+   V + L+DMY+K G +  AR +F+ +E    
Sbjct: 153 IMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTV 212

Query: 296 ---------------------------KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
                                       RD I+W  M+ G T      EAL +FR+M   
Sbjct: 213 VMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAE 272

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            +  +  TF S+L AC  L A + GK IHAYI +   + +NV + ++L+DMY+KC +I+ 
Sbjct: 273 GVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYE-DNVFVGSALVDMYSKCRSIRL 331

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           AE VF  M  + + SW AMI G   +  +++A+  FS M  +G++PDD T   V+S+C +
Sbjct: 332 AEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCAN 391

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
              L+ G Q F+ +     +   +     +V L G+ G  ++A  L   M    D   WT
Sbjct: 392 LASLEEGAQ-FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWT 449

Query: 509 SLL 511
           +L+
Sbjct: 450 ALV 452


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 249/629 (39%), Positives = 378/629 (60%), Gaps = 11/629 (1%)

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG---FVPNTYTFPFILKS 139
           A  VF+ +   + V +N +I G+      +  ++  VRM L     F P+  T   +L++
Sbjct: 261 ARRVFDEMDVRDSVSYNTMICGYL----KLEMVEESVRMFLENLDQFKPDLLTVSSVLRA 316

Query: 140 CAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSY 199
           C  +  +S  K I+ ++LK G   +  V   LI++YA+ G++ +AR VFN    +D VS+
Sbjct: 317 CGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSW 376

Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
            ++I+GY   G L +A +LF  M I EE    +  T + ++S    +  L+ G  + S  
Sbjct: 377 NSIISGYIQSGDLMEAMKLFKMMMIMEEQ--ADHITYLMLISVSTRLADLKFGKGLHSNG 434

Query: 260 EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEAL 319
              G+  +L V+NALIDMY+KCG++  +  +F S+   D ++WN +I       D+   L
Sbjct: 435 IKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGL 494

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
            +  QM +S + P+  TFL  LP CA L A  LGK IH  + +   + + + +  +LI+M
Sbjct: 495 QVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYE-SELQIGNALIEM 553

Query: 380 YAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439
           Y+KCG ++ + +VF+ M  + + +W  MI    M+G+ +KAL  F+ M   G+ PD + F
Sbjct: 554 YSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVF 613

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME 499
           + ++ AC+H+GL+D G   F  M   YKI P ++HY C+VDLL R+    +AE  ++ M 
Sbjct: 614 IAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMP 673

Query: 500 MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559
           +KPDA+IW S+L ACR  G +E  E V++ ++EL P++PG  +L SN YA   +WD V+ 
Sbjct: 674 IKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSL 733

Query: 560 IRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPD 619
           IR  L DK + K PG S IEVG  VH F  GD   PQS+ IY+ L+ + +L+ K G++PD
Sbjct: 734 IRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPD 793

Query: 620 TSEVLYDM-DEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLIS 678
             EV  ++ +EE K   +  HSE+LAIA+GL++T+PGT ++++KNLRVCG+CH  TKLIS
Sbjct: 794 PREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLIS 853

Query: 679 KIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           KI  REI+ RD NRFH FKDG CSC D W
Sbjct: 854 KIVGREILVRDANRFHLFKDGTCSCKDRW 882



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 179/605 (29%), Positives = 303/605 (50%), Gaps = 29/605 (4%)

Query: 37  LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQV 96
           LS  +N+  ++++H+ +I  GL ++ F   KLI+    S F + + +L VF  +     V
Sbjct: 14  LSSSSNLNELRRIHALVISLGLDSSDFFSGKLID--KYSHFREPASSLSVFRRVSPAKNV 71

Query: 97  -IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAH 155
            +WN+IIR  S +     A++FY ++  S   P+ YTFP ++K+CA +     G  ++  
Sbjct: 72  YLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQ 131

Query: 156 VLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDA 215
           +L +G ESD FV  +L++MY++ G L  AR VF++  +RD VS+ +LI+GY+S GY ++A
Sbjct: 132 ILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEA 191

Query: 216 RQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALI 275
            +++ E+  +    VP+  TV +VL A  ++  ++ G  +       G+ S + V N L+
Sbjct: 192 LEIYHEL--KNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLV 249

Query: 276 DMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV 335
            MY K      AR +F+ ++ RD +S+N MI GY      +E++ +F + L    +P+ +
Sbjct: 250 AMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLD-QFKPDLL 308

Query: 336 TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
           T  SVL AC +L  L L K+I+ Y+ K    L + ++   LID+YAKCG++  A  VF+ 
Sbjct: 309 TVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLES-TVRNILIDVYAKCGDMITARDVFNS 367

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
           M  K   SWN++ISG    G   +A+ LF  M+    Q D IT++ ++S       L  G
Sbjct: 368 MECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFG 427

Query: 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACR 515
           +   +  I+   I   L     ++D+  + G   ++  +  +M    D   W +++ AC 
Sbjct: 428 KGLHSNGIKS-GICIDLSVSNALIDMYAKCGEVGDSLKIFSSMG-TGDTVTWNTVISACV 485

Query: 516 VHGRLELGESVAKHLL--ELEPENPGAYVLLSNMYAGA----GRWDDVATIR------TR 563
             G    G  V   +   E+ P+     V L    + A    G+      +R       +
Sbjct: 486 RFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQ 545

Query: 564 LNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIY--------EMLDEIDALLEKSG 615
           + +  ++    C  +E  S V E +    V   +  IY        E   E  A +EKSG
Sbjct: 546 IGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSG 605

Query: 616 FVPDT 620
            VPD+
Sbjct: 606 IVPDS 610



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 118/405 (29%), Positives = 208/405 (51%), Gaps = 9/405 (2%)

Query: 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK-SS 192
           PFI ++ +  S ++E ++IHA V+ LGL+S  F    LI+ Y+   E  S+  VF + S 
Sbjct: 8   PFISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSP 67

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
            ++   + ++I  ++  G   +A + + ++  RE    P++ T  +V+ ACA +   E+G
Sbjct: 68  AKNVYLWNSIIRAFSKNGLFPEALEFYGKL--RESKVSPDKYTFPSVIKACAGLFDAEMG 125

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
           + V   I   G  S+L V NAL+DMYS+ G L +AR +F+ +  RD++SWN +I GY+  
Sbjct: 126 DLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSH 185

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
             Y+EAL ++ ++  S I P+  T  SVLPA   L  +  G+ +H +  K+      V  
Sbjct: 186 GYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVN 245

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
              L+ MY K      A +VFD M  +   S+N MI G       ++++ +F   + +  
Sbjct: 246 -NGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQ-F 303

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ-DYKISPKLQHYGCMVDLLGRAGLFDEA 491
           +PD +T   VL AC H   L + +  +N M++  + +   +++   ++D+  + G    A
Sbjct: 304 KPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRN--ILIDVYAKCGDMITA 361

Query: 492 EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536
             +  +ME K D   W S++      G L     + K ++ +E +
Sbjct: 362 RDVFNSMECK-DTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQ 405


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 258/659 (39%), Positives = 388/659 (58%), Gaps = 5/659 (0%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           +H+   K G     F  + LI+  A S  G + +A  VF+ I   + V W  ++  +S +
Sbjct: 170 IHACACKLGHDRNAFVGTALID--AYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSEN 227

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVH 168
             P  A+  + +M ++GF PN +     LK+   +S+   GK IH   +K   +++P V 
Sbjct: 228 DIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVG 287

Query: 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
            +L++MYA+ G++E A  +F      D + ++ LI+ YA     + A ++F  M      
Sbjct: 288 GALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRM--MRSF 345

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288
            VPNE ++  VL ACA++  LELG  + +L    G  S L V NAL+DMY+KC ++  + 
Sbjct: 346 VVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSL 405

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
           ++F S++  + +SWN +I GY  +   ++AL +F +M  +++    VTF SVL ACA   
Sbjct: 406 EIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTS 465

Query: 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI 408
           ++     IH+ I+K+    N+  +  SLID YAKCG I+ A +VF+ +    + SWN++I
Sbjct: 466 SIKHAVQIHSLIEKSTFN-NDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSII 524

Query: 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
           S  A+HG+A  AL LF RM    ++ +D+TFV +LS C   GL++ G   FN+M+ D++I
Sbjct: 525 SAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRI 584

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
            P ++HY C+V LLGRAG   +A   +  +   P   +W +LL +C VH  + LG   A+
Sbjct: 585 KPSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAE 644

Query: 529 HLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFL 588
            +L++EP +   YVLLSNMYA AG  D+VA  R  + + G+KK  G S +E+   VH F 
Sbjct: 645 KVLDIEPHDETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFS 704

Query: 589 VGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYG 648
           VG   HP  + I  ML+ ++    + G+VPD + VL+D+DEE K   L  HSE+LA+AYG
Sbjct: 705 VGSADHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYG 764

Query: 649 LISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           L  T PG  IRI+KNLR C +CH+  K+ISKI  REII RD NRFHHF++G CSC DYW
Sbjct: 765 LSMTPPGHPIRIMKNLRSCLDCHTMFKVISKIVQREIIVRDINRFHHFEEGICSCGDYW 823



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 141/494 (28%), Positives = 249/494 (50%), Gaps = 25/494 (5%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICA------VSPFGDLSYALLVFETIREPNQVIWNN 100
           + VH+++++ G       +++L   CA       +  G L+ A  +F+ + E N+V +  
Sbjct: 65  RAVHARVVQRG------GVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVT 118

Query: 101 IIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG 160
           +++G++L      A++ + R+   G   N +    ILK    + A      IHA   KLG
Sbjct: 119 LMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLG 178

Query: 161 LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD 220
            + + FV T+LI+ Y+  G +  AR VF+    +DAV++TA+++ Y+     + A   F 
Sbjct: 179 HDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFS 238

Query: 221 EMPIREENFVPNESTVVTVLSACAHMGSLELGNWV--CSLIEGHGLGSNLHVTNALIDMY 278
           +M  R   F PN   + + L A   + S  LG  +  CS+   +   +  HV  AL+DMY
Sbjct: 239 KM--RMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLY--DTEPHVGGALLDMY 294

Query: 279 SKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
           +KCGD+  A  +FE I   DVI W+ +I  Y  +   ++A  +F +M++S + PN+ +  
Sbjct: 295 AKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLS 354

Query: 339 SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
            VL ACA +  L+LG+ IH    K   + + + +  +L+DMYAKC N++ + ++F  +  
Sbjct: 355 GVLQACANIAFLELGEQIHNLAIKLGYE-SELFVGNALMDMYAKCRNMENSLEIFSSLQD 413

Query: 399 KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQY 458
               SWN +I G    G A+ ALS+F  M    +    +TF  VL AC +   +    Q 
Sbjct: 414 ANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQ- 472

Query: 459 FNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
            +++I+    +        ++D   + G   +A  + +++ ++ D   W S++ A  +HG
Sbjct: 473 IHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESI-VECDVVSWNSIISAYALHG 531

Query: 519 R----LELGESVAK 528
           R    LEL + + K
Sbjct: 532 RATNALELFDRMNK 545


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 242/579 (41%), Positives = 355/579 (61%), Gaps = 5/579 (0%)

Query: 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK 190
           + +  +L +C    A+ +G+++HAH++K       ++ T L+  Y +   LE AR V ++
Sbjct: 53  HGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDE 112

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250
              ++ VS+TA+I+ Y+  G+  +A  +F EM +R +   PNE T  TVL++C     L 
Sbjct: 113 MPEKNVVSWTAMISRYSQTGHSSEALTVFAEM-MRSDG-KPNEFTFATVLTSCIRASGLG 170

Query: 251 LGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYT 310
           LG  +  LI      S++ V ++L+DMY+K G + +AR++FE + +RDV+S   +I GY 
Sbjct: 171 LGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYA 230

Query: 311 HTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNV 370
                +EAL +F ++    + PN VT+ S+L A + L  LD GK  H ++ +       V
Sbjct: 231 QLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAV 290

Query: 371 SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE 430
            L  SLIDMY+KCGN+  A ++FD M  +T  SWNAM+ G + HG   + L LF  M  E
Sbjct: 291 -LQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDE 349

Query: 431 G-LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ-DYKISPKLQHYGCMVDLLGRAGLF 488
             ++PD +T + VLS C+H  + D G   F+ M+  +Y   P  +HYGC+VD+LGRAG  
Sbjct: 350 KRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRI 409

Query: 489 DEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548
           DEA   +K M  KP A +  SLLGACRVH  +++GESV + L+E+EPEN G YV+LSN+Y
Sbjct: 410 DEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLY 469

Query: 549 AGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEID 608
           A AGRW DV  +R  +  K + K PG S I+    +H F   D+ HP+ + +   + EI 
Sbjct: 470 ASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEIS 529

Query: 609 ALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCG 668
             ++++G+VPD S VLYD+DEE KE  L  HSEKLA+ +GLI+T  G  IR+ KNLR+C 
Sbjct: 530 IKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICV 589

Query: 669 NCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +CH+  K+ SK+F RE+  RD+NRFH   DG CSC DYW
Sbjct: 590 DCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 126/419 (30%), Positives = 210/419 (50%), Gaps = 18/419 (4%)

Query: 35  ALLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGD---LSYALLVFE 88
           ALL+ C + + ++   +VH+ +IKT      +  ++L+       +G    L  A  V +
Sbjct: 57  ALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIF-----YGKCDCLEDARKVLD 111

Query: 89  TIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE 148
            + E N V W  +I  +S +     A+  +  M+ S   PN +TF  +L SC + S +  
Sbjct: 112 EMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGL 171

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           GKQIH  ++K   +S  FV +SL++MYA+ G+++ AR +F     RD VS TA+I GYA 
Sbjct: 172 GKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQ 231

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
            G  ++A ++F  +    E   PN  T  ++L+A + +  L+ G      +    L    
Sbjct: 232 LGLDEEALEMFHRL--HSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYA 289

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-Q 327
            + N+LIDMYSKCG+L  AR LF+++ +R  ISWN M+ GY+     +E L LFR M  +
Sbjct: 290 VLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDE 349

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIH-AYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
             ++P+ VT L+VL  C++    D G  I    +   +        +  ++DM  + G I
Sbjct: 350 KRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRI 409

Query: 387 KAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
             A +    M  K T     +++    +H   D   S+  R+I   ++P++     +LS
Sbjct: 410 DEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLI--EIEPENAGNYVILS 466


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 242/573 (42%), Positives = 346/573 (60%), Gaps = 35/573 (6%)

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
           G +P     P   KSCA    +  G+QIH+   +LGL+ + FV  S I+MYA+ G  + A
Sbjct: 7   GLLPGPLHLPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDA 66

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
             +F +   RD VS+ A+I+G+A  G    A  +F E+ +  +   P+  T+ ++L +  
Sbjct: 67  YQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFREL-VALQCPKPDAGTMASILPS-- 123

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
            MG                               ++  D+   + +F+ +  + +ISWN 
Sbjct: 124 -MGK------------------------------ARVEDIALLKGVFDEMRFKGLISWNA 152

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           M+  YT+   + EA+ LF +M +  IEP+ VT  +VLP+C  + AL LGK IH  I K  
Sbjct: 153 MLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVI-KRR 211

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF 424
           +  +++ L  +L+DMYA CG +K A  VFD MG + + SW ++IS    HG   +A+ LF
Sbjct: 212 RMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLF 271

Query: 425 SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484
            +M G+GL+PD I FV +L+AC+HAGLLD+G+ YF +M  ++ I+PKL+HY CMVDLLGR
Sbjct: 272 EKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGR 331

Query: 485 AGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL 544
           AG   EA   +  M +KP+  +W +LLGACR+H  +++G   A  LL L P+  G YVLL
Sbjct: 332 AGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLL 391

Query: 545 SNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEML 604
           SN+YA AGRW DV+ +R+ +  KG+KK+PG S+ E+G  VH F +GD  HPQSK IY+ L
Sbjct: 392 SNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKMIYKKL 451

Query: 605 DEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNL 664
            E+   + + G+ P+    L+D++EE KEG LS HSEKLAIA+ LI+T PGT IRI  NL
Sbjct: 452 SELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPGTPIRITMNL 511

Query: 665 RVCGNCHSATKLISKIFNREIIARDRNRFHHFK 697
           R C +CH A KLIS I  REII +D NR H+ K
Sbjct: 512 RTCSDCHHAAKLISTIAGREIILKDVNRIHYMK 544



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145
           VF+ +R    + WN ++  ++ +   V A++ ++RM   G  P+  T   +L SC ++SA
Sbjct: 138 VFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSA 197

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
           +S GK+IH  + +  + S   +  +L++MYA  G L+ AR VF+    RD VS+T++I+ 
Sbjct: 198 LSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISA 257

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGL 264
           Y   G+  +A  LF++M    +   P+    V +L+AC+H G L++G ++  S+     +
Sbjct: 258 YGRHGHGREAIDLFEKMC--GQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHI 315

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGG 308
              L     ++D+  + G + +A D    +  K +   W  ++G 
Sbjct: 316 APKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGA 360


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 249/572 (43%), Positives = 356/572 (62%), Gaps = 10/572 (1%)

Query: 143 ISAISEGKQIHAHVLKLGLE-SDPFVHTSLINMYAQ---NGELESARLVFNK-SSLRDAV 197
           +S++++ +QIHA  ++ G+  SD  +   LI           +  A  VF+K     +  
Sbjct: 27  VSSLTKLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVF 86

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFV-PNESTVVTVLSACAHMGSLELGNWVC 256
            +  LI GYA  G    A  L+ EM  R   FV P+  T   +L A   M  + LG  + 
Sbjct: 87  IWNTLIRGYAEIGNSVSAVSLYREM--RASGFVEPDTHTYPFLLKAVGKMADVRLGETIH 144

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
           S++   G GS ++V N+L+ +Y+ CGD+  A  +F+ + ++D+++WN +I G+      +
Sbjct: 145 SVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPE 204

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           EAL L+ +M    I+P+  T +S+L ACA +GAL LGK  H Y+ K      N+     L
Sbjct: 205 EALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLT-RNLHSSNVL 263

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG-EGLQPD 435
           +D+YA+CG ++ A+ +FD M  K   SW ++I GLA++G   +A+ LF  M   EGL P 
Sbjct: 264 LDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPC 323

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
           +ITFVG+L AC+H G++  G +YF  M ++YKI P+++H+GCMVDLL RAG   +A   +
Sbjct: 324 EITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYI 383

Query: 496 KTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555
             M M+P+  IW +LLGAC VHG  +L E     +L+LEP + G YVLLSNMYA   RW 
Sbjct: 384 LKMPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRWS 443

Query: 556 DVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSG 615
           DV  IR ++   G++KVPG S +EVG+ VHEFL+GDK HPQ+  IY  L E+   L   G
Sbjct: 444 DVQKIRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMIYAKLKEMTDRLRLEG 503

Query: 616 FVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATK 675
           +VP  S V  D++EE KE AL +HSEK+AIA+ LIST     IR+VKNL+VC +CH A K
Sbjct: 504 YVPQISNVYVDVEEEEKENALVYHSEKIAIAFMLISTPERWPIRVVKNLKVCADCHLAIK 563

Query: 676 LISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           L+SK++NREI+ RDR+RFHHFK+G+CSC DYW
Sbjct: 564 LVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 128/420 (30%), Positives = 232/420 (55%), Gaps = 25/420 (5%)

Query: 34  LALLSKCTNM---------QNIKQVHSQIIKTGLHNTQFALSK-----LIEICAVSPFGD 79
           L ++ KC N+           ++Q+H+  I+ G+  +   L K     L+ + +  P   
Sbjct: 12  LPMVEKCINLLQTYGVSSLTKLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPP--- 68

Query: 80  LSYALLVFETIREP-NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV-PNTYTFPFIL 137
           +SYA  VF  I +P N  IWN +IRG++   + V A+  Y  M  SGFV P+T+T+PF+L
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLL 128

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
           K+  K++ +  G+ IH+ V++ G  S  +V  SL+++YA  G++ SA  VF+K   +D V
Sbjct: 129 KAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           ++ ++I G+A  G  ++A  L+ EM ++     P+  T+V++LSACA +G+L LG     
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMDLK--GIKPDGFTIVSLLSACAKIGALTLGKRFHV 246

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
            +   GL  NLH +N L+D+Y++CG + +A+ LF+ +  ++ +SW  +I G       KE
Sbjct: 247 YMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKE 306

Query: 318 ALMLFRQM-LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           A+ LF+ M  +  + P ++TF+ +L AC++ G +  G      + + ++    +  +  +
Sbjct: 307 AIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCM 366

Query: 377 IDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           +D+ A+ G +K A +    M  +  +  W  ++    +HG +D  L+  +RM    L+P+
Sbjct: 367 VDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSD--LAELARMKILQLEPN 424


>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 616

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 259/618 (41%), Positives = 369/618 (59%), Gaps = 34/618 (5%)

Query: 43  MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNII 102
           M+ +K +H+QII  GL N    L KLI  CAV   GDL YA  +F+ I +PN+ ++N++I
Sbjct: 1   MRGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLI 60

Query: 103 RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE 162
           RG+S S  P+ A+  + RMI SG  PN +T PF+LK+C   SA  E   +H   +KLG+ 
Sbjct: 61  RGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIG 120

Query: 163 SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
           S  FV  +LI +Y   G +  AR +F+  + +  VS+ ++I GYA  G   +A  LF +M
Sbjct: 121 SLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKM 180

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
             RE    P+  T V +LS C+    L+LG +V   IE  G+  ++ V NAL+DMY+KCG
Sbjct: 181 --REWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCG 238

Query: 283 DLVKA-------------------------------RDLFESIEKRDVISWNVMIGGYTH 311
           +L  A                               R +F+ +  ++V+SWN MI  Y  
Sbjct: 239 NLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLR 298

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
              Y+EAL LF +M  S + P++ T +S+L AC+ LG L +GK IH YI  N +    V+
Sbjct: 299 EGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSN-KGAYGVT 357

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
           L+ SLIDMYAKCG +  A  +F  M  K L SWN +I  LA+HG   +A+ LF  M  +G
Sbjct: 358 LYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADG 417

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
             PD+IT  G+LSAC+H+GL+D+G  YF+ M   Y++  +++HY CMVDLLGR GL  EA
Sbjct: 418 TLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEA 477

Query: 492 EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA 551
             L+  M MKPD  +W +LLGACR+HG +E+G+ + K LLELEP + G YVL+SN+Y  A
Sbjct: 478 IELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEA 537

Query: 552 GRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALL 611
            RW+DV  IR  + D+G+KK    SSIE+   ++EF+V DK H  S  IY MLD++   L
Sbjct: 538 QRWEDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRHKISSSIYAMLDQLTDHL 597

Query: 612 EKSGFVPDTSEVLYDMDE 629
             +G++ + S V ++ +E
Sbjct: 598 RSAGYLCNISSVFFEAEE 615


>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 240/577 (41%), Positives = 358/577 (62%), Gaps = 12/577 (2%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYA--QNGELESARLVFNKSSL 193
           ++KSC+K + +    QIHAH+++  L  + F+    ++  A   + ++  +  VF++   
Sbjct: 74  LIKSCSKKTHL---LQIHAHIIRTSLIQNHFISLQFLSRAALSPSRDMGYSSQVFSQIMK 130

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
                Y  +I  Y+     +    L+ EM  R     PN  +   V+ +C  + SL  G 
Sbjct: 131 PSGSQYNVMIRAYSMSHSPEQGFYLYREM--RRRGVPPNPLSSSFVMKSCIRISSLMGGL 188

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTS 313
            + + I   G  S+  +   L+D+YS C    +A  +F+ I + D +SWNV+I    H  
Sbjct: 189 QIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCCIHNR 248

Query: 314 DYKEALMLFRQMLQSN---IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNV 370
             ++AL +F  ++QS     EP+DVT L +L ACA LGAL+ G+ +H YI++ H     +
Sbjct: 249 RTRDALRMF-DIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEE-HGYDGAL 306

Query: 371 SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE 430
           +L  SLI MY++CG ++ A  +F  M  + + SW+AMISG AMHG   +A+  F +M   
Sbjct: 307 NLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFEQMQQL 366

Query: 431 GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
           G+ PDD T  GVLSAC+H GL+D G  +F+ M + + I P + HYGCMVDLLGRAGL D+
Sbjct: 367 GVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGRAGLLDQ 426

Query: 491 AEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAG 550
           A  L+ +M +KPD+ +W +LLGACR+H    LGE V  HL+EL+ +  G YVLL N+Y+ 
Sbjct: 427 AYQLIMSMVIKPDSTLWRTLLGACRIHRHATLGERVIGHLIELKAQEAGDYVLLLNIYSS 486

Query: 551 AGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDAL 610
            G WD V  +R  + +KG++  PGCS+IE+   VHEF+V D +HP++  IYEMLDEI   
Sbjct: 487 VGNWDKVTDLRKFMKEKGIQTSPGCSTIELKGKVHEFVVDDILHPRTDEIYEMLDEIGKQ 546

Query: 611 LEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNC 670
           L+ +G+V + S  L+++  E K   LS+HSEKLAIA+G+++T PGTTIR+ KNLR+C +C
Sbjct: 547 LKIAGYVAELSSELHNLGAEEKGNRLSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDC 606

Query: 671 HSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           H+  K++S  +NRE++ RDR RFHHF++G CSCN YW
Sbjct: 607 HNFAKVLSGAYNREVVIRDRTRFHHFREGQCSCNGYW 643



 Score =  228 bits (581), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 129/397 (32%), Positives = 216/397 (54%), Gaps = 5/397 (1%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           ++L+  C+   ++ Q+H+ II+T L    F   + +   A+SP  D+ Y+  VF  I +P
Sbjct: 72  ISLIKSCSKKTHLLQIHAHIIRTSLIQNHFISLQFLSRAALSPSRDMGYSSQVFSQIMKP 131

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           +   +N +IR +S+S SP      Y  M   G  PN  +  F++KSC +IS++  G QIH
Sbjct: 132 SGSQYNVMIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRISSLMGGLQIH 191

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
           A +L+ G +SD  + T+L+++Y+   + E A  VF++    D VS+  LI+         
Sbjct: 192 ARILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCCIHNRRTR 251

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           DA ++FD M    + F P++ T + +L ACA++G+LE G  V + IE HG    L++ N+
Sbjct: 252 DALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGYDGALNLCNS 311

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           LI MYS+CG L KA  +F+ +++R+V+SW+ MI G+      +EA+  F QM Q  + P+
Sbjct: 312 LITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFEQMQQLGVSPD 371

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
           D T   VL AC++ G +D G      + K      N+  +  ++D+  + G +  A Q+ 
Sbjct: 372 DQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGRAGLLDQAYQLI 431

Query: 394 DGMGYKTLAS-WNAMISGLAMHGKADKALSLFSRMIG 429
             M  K  ++ W  ++    +H  A    +L  R+IG
Sbjct: 432 MSMVIKPDSTLWRTLLGACRIHRHA----TLGERVIG 464


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 244/590 (41%), Positives = 362/590 (61%), Gaps = 17/590 (2%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P   TF  ++ SCA+ +++S+G  +H  ++  G + DPF+ T LINMY + G ++ AR V
Sbjct: 76  PTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKV 135

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV---PNESTVVTVLSACA 244
           F+++  R    + AL    A  G   +   L+ +M     N++    +  T   VL AC 
Sbjct: 136 FDETRERTIYVWNALFRALAMVGCGKELLDLYVQM-----NWIGIPSDRFTYTFVLKACV 190

Query: 245 ----HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVI 300
                +  L+ G  + + I  HG  +N+HV   L+D+Y+K G +  A  +F ++  ++ +
Sbjct: 191 VSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFV 250

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQML--QSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
           SW+ MI  +       +AL LF+ M+    +  PN VT ++VL ACA L AL+ GK IH 
Sbjct: 251 SWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHG 310

Query: 359 YIDKNHQKLNNV-SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA 417
           YI +  + L+++  +  +LI MY +CG I   ++VFD M  + + SWN++IS   MHG  
Sbjct: 311 YILR--RGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFG 368

Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
            KA+ +F  MI +G  P  I+F+ VL AC+HAGL++ G+  F +M+  Y+I P ++HY C
Sbjct: 369 KKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYAC 428

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537
           MVDLLGRA   DEA  L++ M  +P   +W SLLG+CR+H  +EL E  +  L ELEP N
Sbjct: 429 MVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPRN 488

Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQS 597
            G YVLL+++YA A  W +  ++   L  +G++K+PGCS IEV   V+ F+  D+ +PQ 
Sbjct: 489 AGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQI 548

Query: 598 KHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTT 657
           + I+ +L ++   ++  G+VP T+ VLYD+DEE KE  +  HSEKLA+A+GLI+T  G T
Sbjct: 549 EEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTVKGET 608

Query: 658 IRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           IRI KNLR+C +CH+ TK ISK  NREI+ RD NRFHHFKDG CSC DYW
Sbjct: 609 IRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFKDGVCSCGDYW 658



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 206/393 (52%), Gaps = 10/393 (2%)

Query: 36  LLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           L+  C    ++     VH +++ +G     F  +KLI +      G +  A  VF+  RE
Sbjct: 84  LICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINM--YYELGSIDRARKVFDETRE 141

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCA----KISAISE 148
               +WN + R  ++       +  YV+M   G   + +T+ F+LK+C      +S + +
Sbjct: 142 RTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQK 201

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           GK+IHAH+L+ G E++  V T+L+++YA+ G +  A  VF     ++ VS++A+I  +A 
Sbjct: 202 GKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAK 261

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
                 A +LF  M +   + VPN  T+V VL ACA + +LE G  +   I   GL S L
Sbjct: 262 NEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSIL 321

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
            V NALI MY +CG+++  + +F++++ RDV+SWN +I  Y      K+A+ +F  M+  
Sbjct: 322 PVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQ 381

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
              P+ ++F++VL AC++ G ++ GK +   +   ++    +  +  ++D+  +   +  
Sbjct: 382 GSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDE 441

Query: 389 AEQVFDGMGYKTLAS-WNAMISGLAMHGKADKA 420
           A ++ + M ++   + W +++    +H   + A
Sbjct: 442 AIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELA 474


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 224/571 (39%), Positives = 361/571 (63%), Gaps = 4/571 (0%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           ++ +CA+  ++ + + IHAH+         F+  SLI++Y + G +  AR VF+    RD
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARD 129

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
             S+T+LI GYA     D+A  L   M      F PN  T  ++L A     S  +G  +
Sbjct: 130 MCSWTSLIAGYAQNDMPDEALGLLPGM--LRGRFKPNGFTFASLLKAAGASASSGIGEQI 187

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
            +L   +    +++V +AL+DMY++CG +  A  +F+ +E ++ +SWN +I G+    D 
Sbjct: 188 HALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDG 247

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
           +  L++F +M ++  E    T+ SV  A A +GAL+ GKW+HA++ K+ ++L+   +  +
Sbjct: 248 ETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAF-VGNT 306

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           ++DMYAK G++  A +VFD +  K + +WN+M++  A +G   +A++ F  M   G+  +
Sbjct: 307 ILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLN 366

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
            ITF+ +L+AC+H GL+  G+QYF+ M+++Y + P++ HY  +VDLLGRAGL ++A   +
Sbjct: 367 QITFLSILTACSHGGLVKEGKQYFD-MMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFI 425

Query: 496 KTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555
             M MKP AA+W +LLG+CR+H   ++G+  A H+ EL+P++ G  VLL N+YA  G+WD
Sbjct: 426 FKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWD 485

Query: 556 DVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSG 615
             A +R  +   G+KK P CS +E+ + VH F+  D  HP+S+ IY+  +EI   + K+G
Sbjct: 486 AAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAG 545

Query: 616 FVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATK 675
           +VP+T  VL  +DE+ ++  L +HSEK+A+A+ LI+   G TIRI+KN+R+CG+CHSA +
Sbjct: 546 YVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFR 605

Query: 676 LISKIFNREIIARDRNRFHHFKDGNCSCNDY 706
            ISK+F REI+ RD NRFHHF  G+CSC DY
Sbjct: 606 YISKVFKREIVVRDTNRFHHFSSGSCSCGDY 636



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/408 (28%), Positives = 209/408 (51%), Gaps = 15/408 (3%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF---GDLSYALLVFETIR 91
           +L++ C   +++    ++ I   L  +QFA S  ++   +  +   G ++ A  VF+ + 
Sbjct: 69  SLITACARYRSLDD--ARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             +   W ++I G++ +  P  A+     M+   F PN +TF  +LK+    ++   G+Q
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IHA  +K     D +V ++L++MYA+ G ++ A  VF++   ++ VS+ ALI G+A +G 
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 246

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
            +    +F EM  +   F     T  +V SA A +G+LE G WV + +   G   +  V 
Sbjct: 247 GETTLLMFAEM--QRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVG 304

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N ++DMY+K G ++ AR +F+ ++K+DV++WN M+  +      +EA+  F +M +  + 
Sbjct: 305 NTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVH 364

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYID--KNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
            N +TFLS+L AC++ G +  GK    Y D  K +     +  + +++D+  + G +  A
Sbjct: 365 LNQITFLSILTACSHGGLVKEGK---QYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDA 421

Query: 390 EQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
                 M  K T A W A++    MH  A   +  F+      L PDD
Sbjct: 422 LVFIFKMPMKPTAAVWGALLGSCRMHKNAK--IGQFAADHVFELDPDD 467


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 257/671 (38%), Positives = 390/671 (58%), Gaps = 12/671 (1%)

Query: 47  KQVHSQIIKTGL-HNTQ-FALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRG 104
           ++ H+  +K GL H  Q FA + L+ + A       +  L    T    + V WN ++  
Sbjct: 186 REAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSV 245

Query: 105 HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG-LES 163
              S     A++    M+  G  P+  TF   L +C+++  +  G+++HA+V+K   L +
Sbjct: 246 LVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAA 305

Query: 164 DPFVHTSLINMYAQNGELESARLVFN--KSSLRDAVSYTALITGYASRGYLDDARQLFDE 221
           + FV ++L++MYA + ++  AR VF+    S +    + A+I GYA  G  ++A +LF  
Sbjct: 306 NSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFAR 365

Query: 222 MPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC 281
           M   E  FVP E+T+ +VL ACA   +      V   +   G+  N  V NAL+DMY++ 
Sbjct: 366 MEA-EAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARL 424

Query: 282 GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ---SNIEPNDVTFL 338
           G    AR +F  ++  DV+SWN +I G        +A  L R+M Q     + PN +T +
Sbjct: 425 GKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLM 484

Query: 339 SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
           ++LP CA L A   GK IH Y  + H    +V++ ++L+DMYAKCG +  +  VFD +  
Sbjct: 485 TLLPGCAILAAPARGKEIHGYAVR-HALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPR 543

Query: 399 KTLASWNAMISGLAMHGKADKALSLFSRMIGEG-LQPDDITFVGVLSACNHAGLLDIGRQ 457
           +   +WN +I    MHG   +A  LF RM   G  +P+++TF+  L+AC+H+G++D G Q
Sbjct: 544 RNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQ 603

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEM-KPDAAIWTSLLGACRV 516
            F+AM +D+ + P      C+VD+LGRAG  DEA A++ +ME  +   + W+++LGACR+
Sbjct: 604 LFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRL 663

Query: 517 HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCS 576
           H  + LGE   + LLELEPE    YVLL N+Y+ AG+W   A +R+R+  +G+ K PGCS
Sbjct: 664 HRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCS 723

Query: 577 SIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGAL 636
            IEV   +H F+ G+  HP S+ ++  ++ +   +   G+ PDTS VL+DMD+  K   L
Sbjct: 724 WIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVL 783

Query: 637 SHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHF 696
             HSEKLAIA+GL+   PG TIR+ KNLRVC +CH A K +SK+  REI+ RD  RFHHF
Sbjct: 784 RCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHF 843

Query: 697 KDGNCSCNDYW 707
           ++G CSC DYW
Sbjct: 844 RNGQCSCGDYW 854



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 129/431 (29%), Positives = 203/431 (47%), Gaps = 21/431 (4%)

Query: 132 TFPFILKSCAKISAISEGKQIHAHVLKLGL--ESDPFVHTSLINMYAQNGELESARLVFN 189
             P  +KS A +      + IHA  L+ GL     P V  +L+  YA+ G L +A  VF 
Sbjct: 59  ALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFG 118

Query: 190 --KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHM- 246
               S  DAVS+ +LI+        D A      M            T+V+VL A +H+ 
Sbjct: 119 SISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPL--TSFTLVSVLRAVSHLP 176

Query: 247 ---GSLELGNWVCSLIEGHGL--GSNLHVTNALIDMYSKCGDLVKARDLFESIE--KRDV 299
               ++ LG    +    +GL  G      NAL+ MY++ G +  A+ LF      + DV
Sbjct: 177 AAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDV 236

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
           ++WN M+     +  + EA+     M+   + P+ VTF S LPAC+ L  LD+G+ +HAY
Sbjct: 237 VTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAY 296

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM--GYKTLASWNAMISGLAMHGKA 417
           + K+ +   N  + ++L+DMYA    +  A QVFD +    K L  WNAMI G A  G  
Sbjct: 297 VIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMD 356

Query: 418 DKALSLFSRMIGE-GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG 476
           ++AL LF+RM  E G  P + T   VL AC  +     G++  +  +    ++       
Sbjct: 357 EEALRLFARMEAEAGFVPCETTMASVLPACARSEAF-AGKEAVHGYVVKRGMAGNRFVQN 415

Query: 477 CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536
            ++D+  R G  D A  +   +++ PD   W +L+  C V G +     +A+ + +LE  
Sbjct: 416 ALMDMYARLGKTDVARRIFAMVDL-PDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEG 474

Query: 537 N--PGAYVLLS 545
              P A  L++
Sbjct: 475 GVVPNAITLMT 485


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 245/564 (43%), Positives = 355/564 (62%), Gaps = 17/564 (3%)

Query: 142 KISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNG--ELESARLVFNKSSLRDAVSY 199
           + S   + KQIHA +L+ GL  DPF  + LI   A +    L+ A+ VF++    +  ++
Sbjct: 44  QCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTW 103

Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
             LI  YAS      +  +F  M  +  +F P++ T   ++ A + +  L  G     ++
Sbjct: 104 NTLIRAYASSSNPHQSLLIFLRMLHQSPDF-PDKFTFPFLIKAASELEELFTGKAFHGMV 162

Query: 260 EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEAL 319
               LGS++ + N+LI  Y+KCG+L     +F +  +RDV+SWN MI  +      +EAL
Sbjct: 163 IKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEAL 222

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
            LF++M   N++PN +T + VL ACA     + G+W+H+YI++N +   +++L  +++DM
Sbjct: 223 ELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERN-RIXESLTLSNAMLDM 281

Query: 380 YAKCGNIKAAEQVFDGMGYKTLASWNAMI------------SGLAMHGKADKALSLFSRM 427
           Y KCG+++ A+++FD M  K + SW  M+             GLAMHG    A++LFS+M
Sbjct: 282 YTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKM 341

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
             + ++P+ +TF  +L AC+H GL++ GR +FN M   Y + P ++HY CMVD+LGRAGL
Sbjct: 342 QEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGL 401

Query: 488 FDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547
            +EA  L++ M M P A++W +LLGAC +H  + L E     L+ELEP N GAYVLLSN+
Sbjct: 402 LEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNI 461

Query: 548 YAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEI 607
           YA AG+WD V+ +R  + D G+KK PGCSSIEV  +VHEFLVGD  HP +K IY  LDEI
Sbjct: 462 YAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEI 521

Query: 608 DALLEKSGFVPDTSEVLYDMDEE-WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRV 666
            A LE  G+VP+ S +L  ++EE  KE AL  HSEKLAIA+GLIST     IRIVKNLRV
Sbjct: 522 VARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRV 581

Query: 667 CGNCHSATKLISKIFNREIIARDR 690
           CG+CHS  KL+SK+++REI+ RDR
Sbjct: 582 CGDCHSVAKLVSKLYDREILLRDR 605



 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 149/448 (33%), Positives = 251/448 (56%), Gaps = 23/448 (5%)

Query: 1   MALPPSSLTLSPSILHFPPSSDPPY------KLLQNQPSLALLSKCTNMQNIKQVHSQII 54
           MA+P   L   P   H  P+ +P        +   N P+L+L+ +C+  + +KQ+H+Q++
Sbjct: 1   MAIPNPCLVSLPRS-HSLPTPNPNSITLNNDRYFANHPTLSLIDQCSETKQLKQIHAQML 59

Query: 55  KTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVA 114
           +TGL    F+ S+LI   A+SPF  L YA  VF+ I  PN   WN +IR ++ SS+P  +
Sbjct: 60  RTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQS 119

Query: 115 IKFYVRMI-LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLIN 173
           +  ++RM+  S   P+ +TFPF++K+ +++  +  GK  H  V+K+ L SD F+  SLI+
Sbjct: 120 LLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIH 179

Query: 174 MYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
            YA+ GEL     VF     RD VS+ ++IT +   G  ++A +LF EM    +N  PN 
Sbjct: 180 FYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEM--ETQNVKPNG 237

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
            T+V VLSACA     E G WV S IE + +  +L ++NA++DMY+KCG +  A+ LF+ 
Sbjct: 238 ITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDK 297

Query: 294 IEKRDVISWNVMIGGYTHTSDY------------KEALMLFRQMLQSNIEPNDVTFLSVL 341
           + ++D++SW  M+ GY    +Y            K+A+ LF +M +  ++PN VTF ++L
Sbjct: 298 MPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNIL 357

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
            AC+++G ++ G+     ++  +  L  V  +  ++D+  + G ++ A ++ + M     
Sbjct: 358 CACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPA 417

Query: 402 AS-WNAMISGLAMHGKADKALSLFSRMI 428
           AS W A++    +H     A    S++I
Sbjct: 418 ASVWGALLGACTIHENVVLAEQACSQLI 445


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 257/671 (38%), Positives = 390/671 (58%), Gaps = 12/671 (1%)

Query: 47  KQVHSQIIKTGL-HNTQ-FALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRG 104
           ++ H+  +K GL H  Q FA + L+ + A       +  L    T    + V WN ++  
Sbjct: 186 REAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSV 245

Query: 105 HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG-LES 163
              S     A++    M+  G  P+  TF   L +C+++  +  G+++HA+V+K   L +
Sbjct: 246 LVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAA 305

Query: 164 DPFVHTSLINMYAQNGELESARLVFN--KSSLRDAVSYTALITGYASRGYLDDARQLFDE 221
           + FV ++L++MYA + ++  AR VF+    S +    + A+I GYA  G  ++A +LF  
Sbjct: 306 NSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFAR 365

Query: 222 MPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC 281
           M   E  FVP E+T+ +VL ACA   +      V   +   G+  N  V NAL+DMY++ 
Sbjct: 366 MEA-EAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARL 424

Query: 282 GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ---SNIEPNDVTFL 338
           G    AR +F  ++  DV+SWN +I G        +A  L R+M Q     + PN +T +
Sbjct: 425 GKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLM 484

Query: 339 SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
           ++LP CA L A   GK IH Y  + H    +V++ ++L+DMYAKCG +  +  VFD +  
Sbjct: 485 TLLPGCAILAAPARGKEIHGYAVR-HALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPR 543

Query: 399 KTLASWNAMISGLAMHGKADKALSLFSRMIGEG-LQPDDITFVGVLSACNHAGLLDIGRQ 457
           +   +WN +I    MHG   +A  LF RM   G  +P+++TF+  L+AC+H+G++D G Q
Sbjct: 544 RNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQ 603

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEM-KPDAAIWTSLLGACRV 516
            F+AM +D+ + P      C+VD+LGRAG  DEA A++ +ME  +   + W+++LGACR+
Sbjct: 604 LFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRL 663

Query: 517 HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCS 576
           H  + LGE   + LLELEPE    YVLL N+Y+ AG+W   A +R+R+  +G+ K PGCS
Sbjct: 664 HRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCS 723

Query: 577 SIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGAL 636
            IEV   +H F+ G+  HP S+ ++  ++ +   +   G+ PDTS VL+DMD+  K   L
Sbjct: 724 WIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVL 783

Query: 637 SHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHF 696
             HSEKLAIA+GL+   PG TIR+ KNLRVC +CH A K +SK+  REI+ RD  RFHHF
Sbjct: 784 RCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHF 843

Query: 697 KDGNCSCNDYW 707
           ++G CSC DYW
Sbjct: 844 RNGQCSCGDYW 854



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 129/431 (29%), Positives = 203/431 (47%), Gaps = 21/431 (4%)

Query: 132 TFPFILKSCAKISAISEGKQIHAHVLKLGL--ESDPFVHTSLINMYAQNGELESARLVFN 189
             P  +KS A +      + IHA  L+ GL     P V  +L+  YA+ G L +A  VF 
Sbjct: 59  ALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFG 118

Query: 190 --KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHM- 246
               S  DAVS+ +LI+        D A      M            T+V+VL A +H+ 
Sbjct: 119 SISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPL--TSFTLVSVLRAVSHLP 176

Query: 247 ---GSLELGNWVCSLIEGHGL--GSNLHVTNALIDMYSKCGDLVKARDLFESIE--KRDV 299
               ++ LG    +    +GL  G      NAL+ MY++ G +  A+ LF      + DV
Sbjct: 177 AAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDV 236

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
           ++WN M+     +  + EA+     M+   + P+ VTF S LPAC+ L  LD+G+ +HAY
Sbjct: 237 VTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAY 296

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM--GYKTLASWNAMISGLAMHGKA 417
           + K+ +   N  + ++L+DMYA    +  A QVFD +    K L  WNAMI G A  G  
Sbjct: 297 VIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMD 356

Query: 418 DKALSLFSRMIGE-GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG 476
           ++AL LF+RM  E G  P + T   VL AC  +     G++  +  +    ++       
Sbjct: 357 EEALRLFARMEAEAGFVPCETTMASVLPACARSEAF-AGKEAVHGYVVKRGMAGNRFVQN 415

Query: 477 CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536
            ++D+  R G  D A  +   +++ PD   W +L+  C V G +     +A+ + +LE  
Sbjct: 416 ALMDMYARLGKTDVARRIFAMVDL-PDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEG 474

Query: 537 N--PGAYVLLS 545
              P A  L++
Sbjct: 475 GVVPNAITLMT 485


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 269/709 (37%), Positives = 380/709 (53%), Gaps = 120/709 (16%)

Query: 6   SSLTLSPSILHF--PPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQF 63
           S LT+S ++ +   P S+  P  +L   P    L+    ++   QVH+ ++  GL  T  
Sbjct: 47  SPLTISATLQNLLQPLSAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTAL 106

Query: 64  ALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMIL 123
             SK++   A S  GD+  ++ VF  I +                               
Sbjct: 107 VGSKMVAFYASS--GDIDSSVSVFNGIGD------------------------------- 133

Query: 124 SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELES 183
                  +TFPF+LKS  ++ ++  GK +H  +L++GL+ D +V TSLI +         
Sbjct: 134 ------YFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIIL--------- 178

Query: 184 ARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC 243
                                 Y   G ++DA ++FD M IR+                 
Sbjct: 179 ----------------------YGKCGEINDAGKVFDNMTIRD----------------- 199

Query: 244 AHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN 303
                  + +W                 NAL+  Y+K G +  A  +FE +  R+++SW 
Sbjct: 200 -------VSSW-----------------NALLAGYTKSGCIDAALAIFERMPWRNIVSWT 235

Query: 304 VMIGGYTHTSDYKEALMLFRQMLQ--SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361
            MI GY+ +   ++AL LF +M++  S + PN VT +SVLPACA L  L+ G+ IH    
Sbjct: 236 TMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELAC 295

Query: 362 KNHQKLN-NVSLWTSLIDMYAKCGNIKAAEQVFDGMGY--KTLASWNAMISGLAMHGKAD 418
           +    LN N S+  +L  MYAKCG++  A   FD +    K L +WN MI+  A +G   
Sbjct: 296 R--MGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGL 353

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478
           +A+S F  MI  G+QPDDITF G+LS C+H+GL+D+G +YFN M   Y I+P+++HY C+
Sbjct: 354 QAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACV 413

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
            DLLGRAG   EA  L+  M M    +IW SLL ACR H  LE+ E+ A+ L  LEPEN 
Sbjct: 414 ADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENT 473

Query: 539 GAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSK 598
           G YVLLSNMYA AGRW +V  +R  +  +G KK PGCS IE+    H FL GD  HPQ K
Sbjct: 474 GNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGK 533

Query: 599 HIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTI 658
            IY  L+ +   ++ +G+ PDTS VL+D+ EE KE  L  HSEKLA+A+G+++T   T +
Sbjct: 534 EIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVL 593

Query: 659 RIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           R+ KNLR+CG+CH+A   IS+I+ RE+I RD NRFHHFK G CSC DYW
Sbjct: 594 RVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 642


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 257/671 (38%), Positives = 390/671 (58%), Gaps = 12/671 (1%)

Query: 47  KQVHSQIIKTGL-HNTQ-FALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRG 104
           ++ H+  +K GL H  Q FA + L+ + A       +  L    T    + V WN ++  
Sbjct: 188 REAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSV 247

Query: 105 HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG-LES 163
              S     A++    M+  G  P+  TF   L +C+++  +  G+++HA+V+K   L +
Sbjct: 248 LVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAA 307

Query: 164 DPFVHTSLINMYAQNGELESARLVFN--KSSLRDAVSYTALITGYASRGYLDDARQLFDE 221
           + FV ++L++MYA + ++  AR VF+    S +    + A+I GYA  G  ++A +LF  
Sbjct: 308 NSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFAR 367

Query: 222 MPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC 281
           M   E  FVP E+T+ +VL ACA   +      V   +   G+  N  V NAL+DMY++ 
Sbjct: 368 MEA-EAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARL 426

Query: 282 GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ---SNIEPNDVTFL 338
           G    AR +F  ++  DV+SWN +I G        +A  L R+M Q     + PN +T +
Sbjct: 427 GKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLM 486

Query: 339 SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
           ++LP CA L A   GK IH Y  + H    +V++ ++L+DMYAKCG +  +  VFD +  
Sbjct: 487 TLLPGCAILAAPARGKEIHGYAVR-HALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPR 545

Query: 399 KTLASWNAMISGLAMHGKADKALSLFSRMIGEG-LQPDDITFVGVLSACNHAGLLDIGRQ 457
           +   +WN +I    MHG   +A  LF RM   G  +P+++TF+  L+AC+H+G++D G Q
Sbjct: 546 RNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQ 605

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEM-KPDAAIWTSLLGACRV 516
            F+AM +D+ + P      C+VD+LGRAG  DEA A++ +ME  +   + W+++LGACR+
Sbjct: 606 LFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRL 665

Query: 517 HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCS 576
           H  + LGE   + LLELEPE    YVLL N+Y+ AG+W   A +R+R+  +G+ K PGCS
Sbjct: 666 HRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCS 725

Query: 577 SIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGAL 636
            IEV   +H F+ G+  HP S+ ++  ++ +   +   G+ PDTS VL+DMD+  K   L
Sbjct: 726 WIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVL 785

Query: 637 SHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHF 696
             HSEKLAIA+GL+   PG TIR+ KNLRVC +CH A K +SK+  REI+ RD  RFHHF
Sbjct: 786 RCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHF 845

Query: 697 KDGNCSCNDYW 707
           ++G CSC DYW
Sbjct: 846 RNGQCSCGDYW 856



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 129/431 (29%), Positives = 203/431 (47%), Gaps = 21/431 (4%)

Query: 132 TFPFILKSCAKISAISEGKQIHAHVLKLGL--ESDPFVHTSLINMYAQNGELESARLVFN 189
             P  +KS A +      + IHA  L+ GL     P V  +L+  YA+ G L +A  VF 
Sbjct: 61  ALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFG 120

Query: 190 --KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHM- 246
               S  DAVS+ +LI+        D A      M            T+V+VL A +H+ 
Sbjct: 121 SISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPL--TSFTLVSVLRAVSHLP 178

Query: 247 ---GSLELGNWVCSLIEGHGL--GSNLHVTNALIDMYSKCGDLVKARDLFESIE--KRDV 299
               ++ LG    +    +GL  G      NAL+ MY++ G +  A+ LF      + DV
Sbjct: 179 AAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDV 238

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
           ++WN M+     +  + EA+     M+   + P+ VTF S LPAC+ L  LD+G+ +HAY
Sbjct: 239 VTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAY 298

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM--GYKTLASWNAMISGLAMHGKA 417
           + K+ +   N  + ++L+DMYA    +  A QVFD +    K L  WNAMI G A  G  
Sbjct: 299 VIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMD 358

Query: 418 DKALSLFSRMIGE-GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG 476
           ++AL LF+RM  E G  P + T   VL AC  +     G++  +  +    ++       
Sbjct: 359 EEALRLFARMEAEAGFVPCETTMASVLPACARSEAF-AGKEAVHGYVVKRGMAGNRFVQN 417

Query: 477 CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536
            ++D+  R G  D A  +   +++ PD   W +L+  C V G +     +A+ + +LE  
Sbjct: 418 ALMDMYARLGKTDVARRIFAMVDL-PDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEG 476

Query: 537 N--PGAYVLLS 545
              P A  L++
Sbjct: 477 GVVPNAITLMT 487


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 261/669 (39%), Positives = 394/669 (58%), Gaps = 34/669 (5%)

Query: 53  IIKTGLHNTQFALS-KLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSP 111
           ++KTG   T  ++   LI++ A +  GDL  A  VF+ + E   V+W  +I  +  +   
Sbjct: 170 VLKTGFWGTDVSVGCALIDMFARN--GDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCA 227

Query: 112 VVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSL 171
              ++ ++ M+  GF P+ Y+   ++ +C ++ ++  G+Q+H+  L+LGL SD  V   L
Sbjct: 228 SKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGL 287

Query: 172 INMYAQ---NGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD-ARQLFDEMPIREE 227
           ++MYA+      +E AR VF      + +S+TALI+GY   G  ++    LF EM    E
Sbjct: 288 VDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREML--NE 345

Query: 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH----VTNALIDMYSKCGD 283
           +  PN  T   +L ACA++   + G      I  H L +++     V NAL+ MY++ G 
Sbjct: 346 SIRPNHITYSNLLKACANLSDQDSGRQ----IHAHVLKTSIAHVNVVGNALVSMYAESGC 401

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND-----VTFL 338
           + +AR  F+ + + +++S +  +    + +              S IE  D      TF 
Sbjct: 402 MEEARKAFDQLYETNILSMSPDVETERNNAS-----------CSSKIEGMDDGVSTFTFA 450

Query: 339 SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
           S+L A A +G L  G+ +HA   K   + ++  +  SL+ MYA+CG ++ A + FD M  
Sbjct: 451 SLLSAAASVGLLTKGQKLHALSMKAGFR-SDQGISNSLVSMYARCGYLEDACRAFDEMKD 509

Query: 399 KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQY 458
             + SW ++ISGLA HG A +ALS+F  MI  G++P+D+T++ VLSAC+H GL+  G+++
Sbjct: 510 HNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSACSHVGLVKEGKEH 569

Query: 459 FNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           F +M +D+ + P+++HY C+VDLL R+GL +EA   +  M  K DA +W +LL ACR +G
Sbjct: 570 FRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCKADALVWKTLLSACRTYG 629

Query: 519 RLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSI 578
             E+GE  A H++ LEP +P  YVLLSN+YA AG WD+VA IR+ + DK + K  G S +
Sbjct: 630 NTEIGEIAANHVINLEPRDPAPYVLLSNLYADAGLWDEVARIRSLMRDKNLSKETGLSWM 689

Query: 579 EVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSH 638
           +VG+ +HEF  GD  HP +  IY  L  +   ++  G+VPDTS VL+DM EE KE  L  
Sbjct: 690 DVGNTIHEFRAGDTSHPLAIDIYAKLVTLIREIKDIGYVPDTSIVLHDMSEELKEQYLLQ 749

Query: 639 HSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKD 698
           HSEK+A+A+GLI+T     +RI KNLRVC +CHSA K ISK   REII RD NRFH  KD
Sbjct: 750 HSEKIAVAFGLITTSATKPMRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRMKD 809

Query: 699 GNCSCNDYW 707
           G CSC +YW
Sbjct: 810 GICSCGEYW 818



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 193/386 (50%), Gaps = 26/386 (6%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLG-LESDPFVHTSLINMYAQNGELESARLVFNK-SSL 193
           +L S A+   +  G+ +H  +L+   L++D  V  SL+ MY++ G +E+AR VF++   +
Sbjct: 46  LLTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGV 105

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL-G 252
           RD VS+TA+ +  A  G   +   L     + E    PN  T+     AC       L G
Sbjct: 106 RDLVSWTAMASCLARNGA--ERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAG 163

Query: 253 NWVCSLIEGHGL-GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311
             V   +   G  G+++ V  ALIDM+++ GDLV A+ +F+ + +R  + W ++I  Y  
Sbjct: 164 GVVLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQ 223

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
                + + LF  ML    EP+  +  S++ AC  LG++ LG+ +H+ +      +++  
Sbjct: 224 AGCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHS-VALRLGLVSDSC 282

Query: 372 LWTSLIDMYAKCG---NIKAAEQVFDGMGYKTLASWNAMISGLAMHG-KADKALSLFSRM 427
           +   L+DMYAK     +++ A +VF  M    + SW A+ISG    G + +  ++LF  M
Sbjct: 283 VSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREM 342

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY----GCMVDLLG 483
           + E ++P+ IT+  +L AC +    D GRQ     I  + +   + H       +V +  
Sbjct: 343 LNESIRPNHITYSNLLKACANLSDQDSGRQ-----IHAHVLKTSIAHVNVVGNALVSMYA 397

Query: 484 RAGLFDEA----EALLKT--MEMKPD 503
            +G  +EA    + L +T  + M PD
Sbjct: 398 ESGCMEEARKAFDQLYETNILSMSPD 423



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 142/279 (50%), Gaps = 8/279 (2%)

Query: 239 VLSACAHMGSLELGNWV-CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI-EK 296
           +L++ A  G L LG  +   L+    L ++  V N+L+ MYSKCG +  AR +F+ +   
Sbjct: 46  LLTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGV 105

Query: 297 RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL-GKW 355
           RD++SW  M          +E+L L  +ML+  + PN  T  +   AC       L G  
Sbjct: 106 RDLVSWTAMASCLARNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAGGV 165

Query: 356 IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHG 415
           +  ++ K      +VS+  +LIDM+A+ G++ AA++VFDG+  +T   W  +I+     G
Sbjct: 166 VLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAG 225

Query: 416 KADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY 475
            A K + LF  M+ +G +PD  +   ++SAC   G + +G+Q  +  ++   +S      
Sbjct: 226 CASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSC 285

Query: 476 GCMVDLLGRAGL---FDEAEALLKTMEMKPDAAIWTSLL 511
           G +VD+  +  +    + A  + KTM  + +   WT+L+
Sbjct: 286 G-LVDMYAKLKMERSMEHARKVFKTMP-RHNVMSWTALI 322



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 153/307 (49%), Gaps = 23/307 (7%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LL  C N+ +    +Q+H+ ++KT + +     + L+ + A S  G +  A   F+ + E
Sbjct: 357 LLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAES--GCMEEARKAFDQLYE 414

Query: 93  PNQVIWNNII---RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG 149
            N +  +  +   R ++  SS +  +   V         +T+TF  +L + A +  +++G
Sbjct: 415 TNILSMSPDVETERNNASCSSKIEGMDDGV---------STFTFASLLSAAASVGLLTKG 465

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           +++HA  +K G  SD  +  SL++MYA+ G LE A   F++    + +S+T++I+G A  
Sbjct: 466 QKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEMKDHNVISWTSIISGLAKH 525

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN-WVCSLIEGHGLGSNL 268
           GY   A  +F +M +      PN+ T + VLSAC+H+G ++ G     S+ + HGL   +
Sbjct: 526 GYAKQALSMFHDMIL--AGVKPNDVTYIAVLSACSHVGLVKEGKEHFRSMQKDHGLLPRM 583

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
                ++D+ ++ G + +AR     +  K D + W  ++       + +   +    ++ 
Sbjct: 584 EHYACIVDLLARSGLVEEARQFINEMPCKADALVWKTLLSACRTYGNTEIGEIAANHVI- 642

Query: 328 SNIEPND 334
            N+EP D
Sbjct: 643 -NLEPRD 648


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 260/669 (38%), Positives = 398/669 (59%), Gaps = 23/669 (3%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           ++VH+Q +K G  ++ F  + L+ + A    G +  A  VF  +   + V WN ++ G  
Sbjct: 221 QRVHAQSVKFGCRSSVFVCNSLMNMYA--KCGLVEDAKSVFNWMETRDMVSWNTLMAGLQ 278

Query: 107 LSSSPVVAIKFY--VRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESD 164
           L+   + A++ +   R  +     +TY    ++K CA +  ++  +Q+H+ VLK G    
Sbjct: 279 LNECELEALQLFHESRATMGKMTQSTYAT--VIKLCANLKQLALARQLHSCVLKHGFHLT 336

Query: 165 PFVHTSLINMYAQNGELESARLVFNKSS-LRDAVSYTALITGYASRGYLDDARQLFDEMP 223
             V T+L + Y++ GEL  A  +F+ ++  R+ VS+TA+I+G    G +  A  LF  M 
Sbjct: 337 GNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRM- 395

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH----VTNALIDMYS 279
            RE+  +PNE T   +L A     SL +   +   I    + +N      V  AL+  YS
Sbjct: 396 -REDRVMPNEFTYSAMLKA-----SLSI---LPPQIHAQVIKTNYQHIPSVGTALLASYS 446

Query: 280 KCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS 339
           K G    A  +F+ IE++DV++W+ M+  +    D + A  LF +M    I+PN+ T  S
Sbjct: 447 KFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISS 506

Query: 340 VLPACAYLGA-LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
           V+ ACA   A +D G+  HA I   ++  + + + ++L+ MY++ GNI +A+ VF+    
Sbjct: 507 VIDACACPSAGVDQGRQFHA-ISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTD 565

Query: 399 KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQY 458
           + L SWN+MISG A HG + KA+  F +M   G+Q D +TF+ V+  C H GL+  G+QY
Sbjct: 566 RDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQY 625

Query: 459 FNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           F++M++D+KI+P ++HY CMVDL  RAG  DE  +L++ M     A +W +LLGACRVH 
Sbjct: 626 FDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHK 685

Query: 519 RLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSI 578
            +ELG+  A  LL LEP +   YVLLSN+YA AG+W +   +R  ++ + +KK  GCS I
Sbjct: 686 NVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWI 745

Query: 579 EVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSH 638
           ++ + VH F+  DK HP S  IY+ L  I   L++ G+ P+TS VL+D+ E+ KE  L  
Sbjct: 746 QIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVA 805

Query: 639 HSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKD 698
           HSE+LA+A+GLI+T PGT ++IVKNLRVCG+CH   K++S I +REII RD +RFHHF  
Sbjct: 806 HSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNG 865

Query: 699 GNCSCNDYW 707
           G CSC D+W
Sbjct: 866 GACSCGDFW 874



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 151/479 (31%), Positives = 245/479 (51%), Gaps = 22/479 (4%)

Query: 47  KQVHSQIIKTGLHNTQF-ALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRG- 104
           +Q+H   +K G    +  A + L+++      G +   + VFE + + N V W +++ G 
Sbjct: 119 EQLHCLCVKCGHDRGEVSAGTSLVDM--YMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGC 176

Query: 105 -HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLES 163
            H+   S V+A+ F  RM   G  PN +TF  +L + A   A+  G+++HA  +K G  S
Sbjct: 177 AHAQMHSEVMALFF--RMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRS 234

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
             FV  SL+NMYA+ G +E A+ VFN    RD VS+  L+ G        +A QLF E  
Sbjct: 235 SVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHES- 293

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
            R       +ST  TV+  CA++  L L   + S +  HG     +V  AL D YSKCG+
Sbjct: 294 -RATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGE 352

Query: 284 LVKARDLFE-SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
           L  A ++F  +   R+V+SW  +I G     D   A++LF +M +  + PN+ T+ ++L 
Sbjct: 353 LADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLK 412

Query: 343 ACAYLGALDLGKWIHAYIDK-NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
           A   +    L   IHA + K N+Q + +V   T+L+  Y+K G+ + A  +F  +  K +
Sbjct: 413 ASLSI----LPPQIHAQVIKTNYQHIPSVG--TALLASYSKFGSTEDALSIFKMIEQKDV 466

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN--HAGLLDIGRQYF 459
            +W+AM+S  A  G  + A  LF++M  +G++P++ T   V+ AC    AG +D GRQ F
Sbjct: 467 VAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAG-VDQGRQ-F 524

Query: 460 NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           +A+   Y+    +     +V +  R G  D A+ + +  +   D   W S++     HG
Sbjct: 525 HAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFER-QTDRDLVSWNSMISGYAQHG 582



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 138/487 (28%), Positives = 234/487 (48%), Gaps = 33/487 (6%)

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           N+V+++   RG      P V  +F V     G + ++ T   +LK+C  +     G+Q+H
Sbjct: 68  NRVLFDYARRGMV----PEVLDQFSVAR-RGGVLVDSATLSCVLKACRSVPDRVLGEQLH 122

Query: 154 AHVLKLGLE-SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
              +K G +  +    TSL++MY + G +     VF     ++ V++T+L+TG A     
Sbjct: 123 CLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMH 182

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
            +   LF  M  R E   PN  T  +VLSA A  G+L+LG  V +     G  S++ V N
Sbjct: 183 SEVMALFFRM--RAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCN 240

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           +L++MY+KCG +  A+ +F  +E RD++SWN ++ G        EAL LF +   +  + 
Sbjct: 241 SLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKM 300

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
              T+ +V+  CA L  L L + +H+ + K+   L   ++ T+L D Y+KCG +  A  +
Sbjct: 301 TQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTG-NVMTALADAYSKCGELADALNI 359

Query: 393 FD-GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           F    G + + SW A+ISG   +G    A+ LFSRM  + + P++ T+  +L A      
Sbjct: 360 FSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKAS----- 414

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLL----GRAGLFDEAEALLKTMEMKPDAAIW 507
           L I     +A +    I    QH   +   L     + G  ++A ++ K +E K D   W
Sbjct: 415 LSILPPQIHAQV----IKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQK-DVVAW 469

Query: 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA--------GRWDDVAT 559
           +++L      G  E G +   + + ++   P  + + S + A A        GR     +
Sbjct: 470 SAMLSCHAQAGDCE-GATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAIS 528

Query: 560 IRTRLND 566
           I+ R +D
Sbjct: 529 IKYRYHD 535



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 173/345 (50%), Gaps = 12/345 (3%)

Query: 184 ARLVFNKSSLRDA-VSYTALITGYASRGYLDDARQLFDEMPI-REENFVPNESTVVTVLS 241
           AR   ++   RDA V    ++  YA RG +    ++ D+  + R    + + +T+  VL 
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVP---EVLDQFSVARRGGVLVDSATLSCVLK 107

Query: 242 ACAHMGSLELGNWV-CSLIE-GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV 299
           AC  +    LG  + C  ++ GH  G  +    +L+DMY KCG + +  ++FE + K++V
Sbjct: 108 ACRSVPDRVLGEQLHCLCVKCGHDRG-EVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNV 166

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
           ++W  ++ G  H   + E + LF +M    I PN  TF SVL A A  GALDLG+ +HA 
Sbjct: 167 VTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQ 226

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADK 419
             K   + ++V +  SL++MYAKCG ++ A+ VF+ M  + + SWN +++GL ++    +
Sbjct: 227 SVKFGCR-SSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELE 285

Query: 420 ALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ-DYKISPKLQHYGCM 478
           AL LF        +    T+  V+  C +   L + RQ  + +++  + ++  +     +
Sbjct: 286 ALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVM--TAL 343

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELG 523
            D   + G   +A  +        +   WT+++  C  +G + L 
Sbjct: 344 ADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLA 388


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 259/679 (38%), Positives = 397/679 (58%), Gaps = 18/679 (2%)

Query: 37  LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQV 96
           LS C  ++  + +HS + ++GL  T    + L    A +  G L  A  VF+   E + V
Sbjct: 235 LSVCAKIRQARAIHSIVRESGLEQTLVVSTALAS--AYARLGHLDQAKEVFDRAAERDVV 292

Query: 97  IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHV 156
            WN ++  ++       A   + RM+  G  P+  T       C   S++  G+ IHA  
Sbjct: 293 SWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGC---SSLRFGRMIHACA 349

Query: 157 LKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDAR 216
           L+ GL+ D  +  +L++MY + G  E AR +F      +AVS+  +I G + +G +  A 
Sbjct: 350 LEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIP-GNAVSWNTMIAGSSQKGQMKRAL 408

Query: 217 QLFDEMPIREENFVPNESTVVTVLSACA----HMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           +LF  M +  E   P  +T + +L A A       ++  G  + S I   G  S   +  
Sbjct: 409 ELFQRMQL--EGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGT 466

Query: 273 ALIDMYSKCGDLVKARDLFE--SIEKR-DVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           A++ MY+ CG + +A   F+  ++E R DV+SWN +I   +     K AL  FR+M    
Sbjct: 467 AVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHG 526

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           + PN +T ++VL ACA   AL  G  +H ++  +  + +NV + T+L  MY +CG++++A
Sbjct: 527 VAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGME-SNVFVATALASMYGRCGSLESA 585

Query: 390 EQVFDGMGY-KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
            ++F+ +   + +  +NAMI+  + +G A +AL LF RM  EG +PD+ +FV VLSAC+H
Sbjct: 586 REIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSH 645

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
            GL D G + F +M Q Y I+P   HY C VD+LGRAG   +AE L++ M++KP   +W 
Sbjct: 646 GGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWK 705

Query: 509 SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568
           +LLGACR +  ++ G      + EL+P +  AYV+LSN+ AGAG+WD+ A +RT +  +G
Sbjct: 706 TLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESRG 765

Query: 569 MKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
           ++K  G S IE+ S VHEF+ GD+ HP+S+ IY  L+ + A + + G+VPDT  VL  +D
Sbjct: 766 LRKQAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRLVLRKVD 825

Query: 629 EEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIAR 688
           E  KE  L  HSE+LAIA G++S+    T+R++KNLRVC +CH+ATK ISKI N+EI+ R
Sbjct: 826 EAEKERLLCQHSERLAIALGVMSSST-DTVRVMKNLRVCEDCHNATKFISKIVNKEIVVR 884

Query: 689 DRNRFHHFKDGNCSCNDYW 707
           D +RFHHF DG+CSC DYW
Sbjct: 885 DTHRFHHFVDGSCSCGDYW 903



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 146/481 (30%), Positives = 241/481 (50%), Gaps = 28/481 (5%)

Query: 47  KQVHSQIIKTGLHNT-QFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           +++H++I+  GL       L +L   C     GD+     VF  +   ++  W  II  +
Sbjct: 49  RRIHARIVSLGLEEELGNHLLRLYLKC--ESLGDVEE---VFSRLEVRDEASWTTIITAY 103

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
           +       AI  + RM   G   +  TF  +LK+CA++  +S+G+ IHA +++ GLE   
Sbjct: 104 TEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLEGKS 163

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
            +   L+++Y   G + SA L+F +   RD VS+ A I   A  G LD A +LF  M + 
Sbjct: 164 VLANLLLHIYGSCGCVASAMLLFERME-RDLVSWNAAIAANAQSGDLDMALELFQRMQL- 221

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
            E   P   T+V  LS CA    +     + S++   GL   L V+ AL   Y++ G L 
Sbjct: 222 -EGVRPARITLVITLSVCA---KIRQARAIHSIVRESGLEQTLVVSTALASAYARLGHLD 277

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
           +A+++F+   +RDV+SWN M+G Y       EA +LF +ML   I P+ VT ++    C+
Sbjct: 278 QAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGCS 337

Query: 346 YLGALDLGKWIHA-YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
              +L  G+ IHA  ++K   +  ++ L  +L+DMY +CG+ + A  +F+G+    + SW
Sbjct: 338 ---SLRFGRMIHACALEKGLDR--DIVLGNALLDMYTRCGSPEEARHLFEGIPGNAV-SW 391

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC----NHAGLLDIGRQYFN 460
           N MI+G +  G+  +AL LF RM  EG+ P   T++ +L A       A  +  GR+  +
Sbjct: 392 NTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHS 451

Query: 461 AMIQ-DYKISPKLQHYGCMVDLLGRAGLFDEAEALLK--TMEMKPDAAIWTSLLGACRVH 517
            ++   Y   P +     +V +    G  DEA A  +   ME + D   W +++ +   H
Sbjct: 452 RIVSCGYASEPAIG--TAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQH 509

Query: 518 G 518
           G
Sbjct: 510 G 510



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 191/386 (49%), Gaps = 15/386 (3%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           +L++      +S+G++IHA ++ LGLE +   H  L+ +Y +   L     VF++  +RD
Sbjct: 35  LLRAAGDDRLLSQGRRIHARIVSLGLEEELGNH--LLRLYLKCESLGDVEEVFSRLEVRD 92

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
             S+T +IT Y   G    A  +F  M  ++E    +  T + VL ACA +G L  G  +
Sbjct: 93  EASWTTIITAYTEHGQAKRAIWMFHRM--QQEGVRCDAVTFLAVLKACARLGDLSQGRSI 150

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
            + I   GL     + N L+ +Y  CG +  A  LFE +E RD++SWN  I     + D 
Sbjct: 151 HAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERME-RDLVSWNAAIAANAQSGDL 209

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
             AL LF++M    + P  +T +  L  CA    +   + IH+ + ++  +   + + T+
Sbjct: 210 DMALELFQRMQLEGVRPARITLVITLSVCA---KIRQARAIHSIVRESGLE-QTLVVSTA 265

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           L   YA+ G++  A++VFD    + + SWNAM+   A HG   +A  LF+RM+ EG+ P 
Sbjct: 266 LASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPS 325

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
            +T V   + C+    L  GR   +A   +  +   +     ++D+  R G  +EA  L 
Sbjct: 326 KVTLVNASTGCSS---LRFGR-MIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLF 381

Query: 496 KTMEMKPDAAIWTSLLGACRVHGRLE 521
           +   +  +A  W +++      G+++
Sbjct: 382 EG--IPGNAVSWNTMIAGSSQKGQMK 405


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 260/669 (38%), Positives = 398/669 (59%), Gaps = 23/669 (3%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           ++VH+Q +K G  ++ F  + L+ + A    G +  A  VF  +   + V WN ++ G  
Sbjct: 221 QRVHAQSVKFGCRSSVFVCNSLMNMYA--KCGLVEDAKSVFNWMETRDMVSWNTLMAGLQ 278

Query: 107 LSSSPVVAIKFY--VRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESD 164
           L+   + A++ +   R  +     +TY    ++K CA +  ++  +Q+H+ VLK G    
Sbjct: 279 LNECELEALQLFHESRATMGKMTQSTYAT--VIKLCANLKQLALARQLHSCVLKHGFHLT 336

Query: 165 PFVHTSLINMYAQNGELESARLVFNKSS-LRDAVSYTALITGYASRGYLDDARQLFDEMP 223
             V T+L + Y++ GEL  A  +F+ ++  R+ VS+TA+I+G    G +  A  LF  M 
Sbjct: 337 GNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRM- 395

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH----VTNALIDMYS 279
            RE+  +PNE T   +L A     SL +   +   I    + +N      V  AL+  YS
Sbjct: 396 -REDRVMPNEFTYSAMLKA-----SLSI---LPPQIHAQVIKTNYQHIPFVGTALLASYS 446

Query: 280 KCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS 339
           K G    A  +F+ IE++DV++W+ M+  +    D + A  LF +M    I+PN+ T  S
Sbjct: 447 KFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISS 506

Query: 340 VLPACAYLGA-LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
           V+ ACA   A +D G+  HA I   ++  + + + ++L+ MY++ GNI +A+ VF+    
Sbjct: 507 VIDACACPSAGVDQGRQFHA-ISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTD 565

Query: 399 KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQY 458
           + L SWN+MISG A HG + KA+  F +M   G+Q D +TF+ V+  C H GL+  G+QY
Sbjct: 566 RDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQY 625

Query: 459 FNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           F++M++D+KI+P ++HY CMVDL  RAG  DE  +L++ M     A +W +LLGACRVH 
Sbjct: 626 FDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHK 685

Query: 519 RLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSI 578
            +ELG+  A  LL LEP +   YVLLSN+YA AG+W +   +R  ++ + +KK  GCS I
Sbjct: 686 NVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWI 745

Query: 579 EVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSH 638
           ++ + VH F+  DK HP S  IY+ L  I   L++ G+ P+TS VL+D+ E+ KE  L  
Sbjct: 746 QIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVA 805

Query: 639 HSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKD 698
           HSE+LA+A+GLI+T PGT ++IVKNLRVCG+CH   K++S I +REII RD +RFHHF  
Sbjct: 806 HSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNG 865

Query: 699 GNCSCNDYW 707
           G CSC D+W
Sbjct: 866 GACSCGDFW 874



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 151/479 (31%), Positives = 244/479 (50%), Gaps = 22/479 (4%)

Query: 47  KQVHSQIIKTGLHNTQF-ALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRG- 104
           +Q+H   +K G    +  A + L+++      G +   + VFE + + N V W +++ G 
Sbjct: 119 EQLHCLCVKCGHDRGEVSAGTSLVDM--YMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGC 176

Query: 105 -HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLES 163
            H+   S V+A+ F  RM   G  PN +TF  +L + A   A+  G+++HA  +K G  S
Sbjct: 177 AHAQMHSEVMALFF--RMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRS 234

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
             FV  SL+NMYA+ G +E A+ VFN    RD VS+  L+ G        +A QLF E  
Sbjct: 235 SVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHES- 293

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
            R       +ST  TV+  CA++  L L   + S +  HG     +V  AL D YSKCG+
Sbjct: 294 -RATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGE 352

Query: 284 LVKARDLFE-SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
           L  A ++F  +   R+V+SW  +I G     D   A++LF +M +  + PN+ T+ ++L 
Sbjct: 353 LADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLK 412

Query: 343 ACAYLGALDLGKWIHAYIDK-NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
           A   +    L   IHA + K N+Q +  V   T+L+  Y+K G+ + A  +F  +  K +
Sbjct: 413 ASLSI----LPPQIHAQVIKTNYQHIPFVG--TALLASYSKFGSTEDALSIFKMIEQKDV 466

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN--HAGLLDIGRQYF 459
            +W+AM+S  A  G  + A  LF++M  +G++P++ T   V+ AC    AG +D GRQ F
Sbjct: 467 VAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAG-VDQGRQ-F 524

Query: 460 NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           +A+   Y+    +     +V +  R G  D A+ + +  +   D   W S++     HG
Sbjct: 525 HAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFER-QTDRDLVSWNSMISGYAQHG 582



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 131/460 (28%), Positives = 222/460 (48%), Gaps = 36/460 (7%)

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE-SDPFVHTSLINMYAQNGELES 183
           G + ++ T   +LK+C  +     G+Q+H   +K G +  +    TSL++MY + G +  
Sbjct: 94  GVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCE 153

Query: 184 ARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC 243
              VF     ++ V++T+L+TG A      +   LF  M  R E   PN  T  +VLSA 
Sbjct: 154 GIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRM--RAEGIWPNPFTFASVLSAV 211

Query: 244 AHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN 303
           A  G+L+LG  V +     G  S++ V N+L++MY+KCG +  A+ +F  +E RD++SWN
Sbjct: 212 ASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWN 271

Query: 304 VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363
            ++ G        EAL LF +   +  +    T+ +V+  CA L  L L + +H+ + K+
Sbjct: 272 TLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKH 331

Query: 364 HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD-GMGYKTLASWNAMISGLAMHGKADKALS 422
              L   ++ T+L D Y+KCG +  A  +F    G + + SW A+ISG   +G    A+ 
Sbjct: 332 GFHLTG-NVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVV 390

Query: 423 LFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482
           LFSRM  + + P++ T+  +L A      L I     +A +    I    QH    +  +
Sbjct: 391 LFSRMREDRVMPNEFTYSAMLKAS-----LSILPPQIHAQV----IKTNYQH----IPFV 437

Query: 483 GRA--------GLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534
           G A        G  ++A ++ K +E K D   W+++L      G  E G +   + + ++
Sbjct: 438 GTALLASYSKFGSTEDALSIFKMIEQK-DVVAWSAMLSCHAQAGDCE-GATYLFNKMAIQ 495

Query: 535 PENPGAYVLLSNMYAGA--------GRWDDVATIRTRLND 566
              P  + + S + A A        GR     +I+ R +D
Sbjct: 496 GIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHD 535



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 173/345 (50%), Gaps = 12/345 (3%)

Query: 184 ARLVFNKSSLRDA-VSYTALITGYASRGYLDDARQLFDEMPI-REENFVPNESTVVTVLS 241
           AR   ++   RDA V    ++  YA RG +    ++ D+  + R    + + +T+  VL 
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMV---LEVLDQFSVARRGGVLVDSATLSCVLK 107

Query: 242 ACAHMGSLELGNWV-CSLIE-GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV 299
           AC  +    LG  + C  ++ GH  G  +    +L+DMY KCG + +  ++FE + K++V
Sbjct: 108 ACRSVPDRVLGEQLHCLCVKCGHDRG-EVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNV 166

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
           ++W  ++ G  H   + E + LF +M    I PN  TF SVL A A  GALDLG+ +HA 
Sbjct: 167 VTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQ 226

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADK 419
             K   + ++V +  SL++MYAKCG ++ A+ VF+ M  + + SWN +++GL ++    +
Sbjct: 227 SVKFGCR-SSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELE 285

Query: 420 ALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ-DYKISPKLQHYGCM 478
           AL LF        +    T+  V+  C +   L + RQ  + +++  + ++  +     +
Sbjct: 286 ALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVM--TAL 343

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELG 523
            D   + G   +A  +        +   WT+++  C  +G + L 
Sbjct: 344 ADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLA 388


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/625 (38%), Positives = 370/625 (59%), Gaps = 4/625 (0%)

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           A+LVF+ +   + + WN++I G + +     AI+ +VRM L G   ++ T   +L +CA+
Sbjct: 250 AILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAE 309

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
           +  +  G+ +H + +K G  S   +   L++MY+   +  S   +F     ++ VS+TA+
Sbjct: 310 LHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAM 369

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
           IT Y   G  D    LF EM +  E   P+   + + L A A    L+ G  V      +
Sbjct: 370 ITSYTRAGLYDKVAGLFQEMGL--EGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRN 427

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
           G+   L VTNAL++MY KCG++ +A+ +F+ +  +D+ISWN +IGGY+  +   EA  LF
Sbjct: 428 GMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLF 487

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
            +ML   + PN VT   +LPA A L +L+ G+ +HAY  +    L +  +  +LIDMY K
Sbjct: 488 TEMLL-QLRPNAVTMTCILPAAASLSSLERGREMHAYALR-RGYLEDDFVANALIDMYVK 545

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
           CG +  A ++FD +  K L SW  M++G  MHG+   A++LF +M   G+ PD  +F  +
Sbjct: 546 CGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAI 605

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
           L AC+H+GL D G ++F+AM +++KI P+L+HY CMVDLL   G   EA   + +M ++P
Sbjct: 606 LYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEP 665

Query: 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562
           D++IW SLL  CR+H  ++L E VA+ + ELEPEN G YVLL+N+YA A RW+ V  ++ 
Sbjct: 666 DSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLKN 725

Query: 563 RLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSE 622
           ++  +G+++  GCS IE    VH F+  ++ HPQ   I E L+E+   +++ G  P    
Sbjct: 726 KIGGRGLRENTGCSWIEAKGKVHVFIADNRNHPQGTRIAEFLNEVAKRMQEEGHDPKKKY 785

Query: 623 VLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFN 682
            L   D      AL  HS KLA+A+G+++   G  IR+ KN RVC +CH A K ISK+ +
Sbjct: 786 ALMGADNAVHGEALCGHSSKLAVAFGVLNLSEGRLIRVTKNSRVCSHCHEAAKFISKMCS 845

Query: 683 REIIARDRNRFHHFKDGNCSCNDYW 707
           REII RD NRFHHF+ G CSC  YW
Sbjct: 846 REIILRDSNRFHHFEQGRCSCRGYW 870



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 141/471 (29%), Positives = 234/471 (49%), Gaps = 38/471 (8%)

Query: 78  GDLSYALLVFETIREPNQV-IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
           GDL  A  VF+ + + + V +W  ++ G++ +      +  + +M   G  P+ YT   +
Sbjct: 143 GDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCV 202

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           LK  A + +I +G+ +H  + KLG  S   V  +L+  YA++   + A LVF+    RD 
Sbjct: 203 LKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDV 262

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           +S+ ++I+G  S G  D A +LF  M +  E    + +T+++VL ACA +  L LG  V 
Sbjct: 263 ISWNSMISGCTSNGLYDKAIELFVRMWLEGEEL--DSATLLSVLPACAELHLLFLGRVVH 320

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
                 G  S   + N L+DMYS C D      +F ++ +++V+SW  MI  YT    Y 
Sbjct: 321 GYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYD 380

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           +   LF++M      P+     S L A A    L  GK +H Y  +N  +   +++  +L
Sbjct: 381 KVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGME-KVLAVTNAL 439

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           ++MY KCGN++ A+ +FDG+  K + SWN +I G + +  A++A SLF+ M+ + L+P+ 
Sbjct: 440 MEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNA 498

Query: 437 ITFVGVLSACNHAGLLDIGRQYF---------------NAMIQDY--------------K 467
           +T   +L A      L+ GR+                 NA+I  Y              +
Sbjct: 499 VTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDR 558

Query: 468 ISPK-LQHYGCMVDLLGRAGLFDEAEALLKTME---MKPDAAIWTSLLGAC 514
           +S K L  +  MV   G  G   +A AL + M    + PDAA ++++L AC
Sbjct: 559 LSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYAC 609



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/386 (32%), Positives = 193/386 (50%), Gaps = 9/386 (2%)

Query: 132 TFPFILKSCAKISAISEGKQIH--AHVLKLGLES-DPFVHTSLINMYAQNGELESARLVF 188
           ++  +L+ C+++ ++  GK+ H       LG +  D  +   L+ MY + G+LE+AR VF
Sbjct: 93  SYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARRVF 152

Query: 189 NK-SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
           ++   + D   +TAL++GYA  G L +   LF +M        P+  T+  VL   A +G
Sbjct: 153 DEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHC--CGVRPDAYTISCVLKCIAGLG 210

Query: 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG 307
           S+E G  V  L+E  G GS   V NAL+  Y+K      A  +F+ +  RDVISWN MI 
Sbjct: 211 SIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMIS 270

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
           G T    Y +A+ LF +M     E +  T LSVLPACA L  L LG+ +H Y  K    +
Sbjct: 271 GCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKT-GFI 329

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
           +  SL   L+DMY+ C + ++  ++F  M  K + SW AMI+     G  DK   LF  M
Sbjct: 330 SQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEM 389

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
             EG +PD       L A     LL  G+      I++  +   L     ++++  + G 
Sbjct: 390 GLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRN-GMEKVLAVTNALMEMYVKCGN 448

Query: 488 FDEAEALLKTMEMKPDAAIWTSLLGA 513
            +EA+ +   +  K D   W +L+G 
Sbjct: 449 MEEAKLIFDGVVSK-DMISWNTLIGG 473



 Score = 46.2 bits (108), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 82/212 (38%), Gaps = 40/212 (18%)

Query: 32  PSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           P+ A LS   +++  +++H+  ++ G     F  + LI++      G L  A  +F+ + 
Sbjct: 506 PAAASLS---SLERGREMHAYALRRGYLEDDFVANALIDM--YVKCGALLLARRLFDRLS 560

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             N + W  ++ G+ +      AI  + +M +SG  P+  +F  IL +C+      EG +
Sbjct: 561 NKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWR 620

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
               + K         H                              YT ++    + G 
Sbjct: 621 FFDAMRKEHKIEPRLKH------------------------------YTCMVDLLINTGN 650

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSAC 243
           L +A +  D MPI      P+ S  V++L  C
Sbjct: 651 LKEAYEFIDSMPIE-----PDSSIWVSLLRGC 677


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 257/671 (38%), Positives = 390/671 (58%), Gaps = 12/671 (1%)

Query: 47  KQVHSQIIKTGL-HNTQ-FALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRG 104
           ++ H+  +K GL H  Q FA + L+ + A       +  L    T    + V WN ++  
Sbjct: 34  REAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSV 93

Query: 105 HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG-LES 163
              S     A++    M+  G  P+  TF   L +C+++  +  G+++HA+V+K   L +
Sbjct: 94  LVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAA 153

Query: 164 DPFVHTSLINMYAQNGELESARLVFN--KSSLRDAVSYTALITGYASRGYLDDARQLFDE 221
           + FV ++L++MYA + ++  AR VF+    S +    + A+I GYA  G  ++A +LF  
Sbjct: 154 NSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFAR 213

Query: 222 MPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC 281
           M   E  FVP E+T+ +VL ACA   +      V   +   G+  N  V NAL+DMY++ 
Sbjct: 214 MEA-EAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARL 272

Query: 282 GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ---SNIEPNDVTFL 338
           G    AR +F  ++  DV+SWN +I G        +A  L R+M Q     + PN +T +
Sbjct: 273 GKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLM 332

Query: 339 SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
           ++LP CA L A   GK IH Y  + H    +V++ ++L+DMYAKCG +  +  VFD +  
Sbjct: 333 TLLPGCAILAAPARGKEIHGYAVR-HALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPR 391

Query: 399 KTLASWNAMISGLAMHGKADKALSLFSRMIGEG-LQPDDITFVGVLSACNHAGLLDIGRQ 457
           +   +WN +I    MHG   +A  LF RM   G  +P+++TF+  L+AC+H+G++D G Q
Sbjct: 392 RNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQ 451

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEM-KPDAAIWTSLLGACRV 516
            F+AM +D+ + P      C+VD+LGRAG  DEA A++ +ME  +   + W+++LGACR+
Sbjct: 452 LFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRL 511

Query: 517 HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCS 576
           H  + LGE   + LLELEPE    YVLL N+Y+ AG+W   A +R+R+  +G+ K PGCS
Sbjct: 512 HRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCS 571

Query: 577 SIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGAL 636
            IEV   +H F+ G+  HP S+ ++  ++ +   +   G+ PDTS VL+DMD+  K   L
Sbjct: 572 WIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVL 631

Query: 637 SHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHF 696
             HSEKLAIA+GL+   PG TIR+ KNLRVC +CH A K +SK+  REI+ RD  RFHHF
Sbjct: 632 RCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHF 691

Query: 697 KDGNCSCNDYW 707
           ++G CSC DYW
Sbjct: 692 RNGQCSCGDYW 702


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 272/774 (35%), Positives = 414/774 (53%), Gaps = 104/774 (13%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L L  + T++Q  + VH  II  G       L++LI++   S   +L YA  +F+ I EP
Sbjct: 21  LCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKS--SELDYARQLFDEISEP 78

Query: 94  NQ---------------------------------VIWNNIIRGHSLSSSPVVAIKFYVR 120
           ++                                 V++N +I G S ++    AI  + +
Sbjct: 79  DKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCK 138

Query: 121 MILSGFVPNTYTFPFILKSCA-KISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNG 179
           M   GF P+ +T+  +L   A  +    +  Q HA  LK G      V  +L+++Y++  
Sbjct: 139 MKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCA 198

Query: 180 E----LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD--------------- 220
                L SAR VF+    +D  S+T ++TGY   G  D  ++L                 
Sbjct: 199 SSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMI 258

Query: 221 -------------EMPIR--EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
                        EM  R        +E T  +V+ ACA+   L+LG  V + +      
Sbjct: 259 SGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDF 318

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
           S  H  N+L+ +Y KCG   +AR +FE +  +D++SWN ++ GY  +    EA ++F++M
Sbjct: 319 S-FHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEM 377

Query: 326 LQSNI-------------------------------EPNDVTFLSVLPACAYLGALDLGK 354
            + NI                               EP D  F   + +CA LGA   G+
Sbjct: 378 KEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQ 437

Query: 355 WIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMH 414
             HA + K     +++S   +LI MYAKCG ++ A+QVF  M      SWNA+I+ L  H
Sbjct: 438 QFHAQLVKIGFD-SSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQH 496

Query: 415 GKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQH 474
           G   +A+ ++  M+ +G++PD ITF+ VL+AC+HAGL+D GR+YFN+M   Y+I P   H
Sbjct: 497 GHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADH 556

Query: 475 YGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534
           Y  ++DLL R+G F EAE++++++  KP A IW +LL  CRVHG +ELG   A  L  L 
Sbjct: 557 YARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLI 616

Query: 535 PENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVH 594
           PE+ G Y+LLSNMYA  G+W++VA +R  + D+G+KK   CS IE+ + VH FLV D  H
Sbjct: 617 PEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSH 676

Query: 595 PQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW-KEGALSHHSEKLAIAYGLISTK 653
           P+++ +Y+ L ++   + + G+VPDTS VL+D++ +  KE  L+ HSEK+A+A+GL+   
Sbjct: 677 PEAEAVYKYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLP 736

Query: 654 PGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           PGTTIRI KNLR CG+CH+  + +SK+  R+II RDR RFHHF++G CSC ++W
Sbjct: 737 PGTTIRIFKNLRTCGDCHNFFRFLSKVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 128/496 (25%), Positives = 212/496 (42%), Gaps = 113/496 (22%)

Query: 127 VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARL 186
           + N Y     L    + +++   + +H +++  G +    +   LI++Y ++ EL+ AR 
Sbjct: 11  IANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQ 70

Query: 187 VFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPI---------------------- 224
           +F++ S  D ++ T +++GY + G +  AR +F+E P+                      
Sbjct: 71  LFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGY 130

Query: 225 ---------REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH------GLGSNLH 269
                    + E F P++ T  +VL+  A +   E        ++ H      G G    
Sbjct: 131 SAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEK-----QCVQFHAAALKSGAGYVTS 185

Query: 270 VTNALIDMYSKCGD----LVKARDLFESIEKRDVISW----------------------- 302
           V+NAL+ +YS+C      L  AR +F+ I ++D  SW                       
Sbjct: 186 VSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGM 245

Query: 303 ---------NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
                    N MI GY +   Y+EAL + R+M+ S IE ++ T+ SV+ ACA    L LG
Sbjct: 246 DENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLG 305

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA------- 406
           K +HAY+ +      +     SL+ +Y KCG    A  +F+ M  K L SWNA       
Sbjct: 306 KQVHAYVLRRED--FSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVS 363

Query: 407 ------------------------MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
                                   MISGLA +G  ++ L LFS M  EG +P D  F G 
Sbjct: 364 SGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGA 423

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
           + +C   G    G+Q F+A +        L     ++ +  + G+ +EA+ + +TM    
Sbjct: 424 IKSCAVLGAYCNGQQ-FHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPC-L 481

Query: 503 DAAIWTSLLGACRVHG 518
           D+  W +L+ A   HG
Sbjct: 482 DSVSWNALIAALGQHG 497


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 251/663 (37%), Positives = 393/663 (59%), Gaps = 12/663 (1%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSL 107
           QVH+ ++K GL  T    + LI +      G++  A ++F+     + V WN++I G++ 
Sbjct: 219 QVHTVVVKNGLDKTIPVSNSLINL--YLKCGNVRKARILFDKTEVKSVVTWNSMISGYAA 276

Query: 108 SSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFV 167
           +   + A+  +  M L+    +  +F  I+K CA +  +   +Q+H  V+K G   D  +
Sbjct: 277 NGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNI 336

Query: 168 HTSLINMYAQ-NGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
            T+L+  Y++    L++ RL      L + VS+TA+I+G+      ++A  LF EM  + 
Sbjct: 337 RTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEM--KR 394

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           +   PNE T   +L+A   +   E+   V           +  V  AL+D Y K G + +
Sbjct: 395 KGVRPNEFTYSVILTALPVISPSEVHAQVVKT----NYERSSTVGTALLDAYVKLGKVDE 450

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A  +F  I+ +D+++W+ M+ GY    + + A+ +F ++ +  ++PN+ TF S+L  CA 
Sbjct: 451 AAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAA 510

Query: 347 LGA-LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
             A +  GK  H +  K+    +++ + ++L+ MYAK G+I++AE+VF     K L SWN
Sbjct: 511 TTASMGQGKQFHGFAIKSRLD-SSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWN 569

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
           +MISG A HG+A KAL +F  M    ++ D +TF+GV +AC HAGL++ G +YF+ M++D
Sbjct: 570 SMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRD 629

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
            KI+P  +H  CMVDL  RAG  ++A  ++  M     + IW ++L ACRVH + ELG  
Sbjct: 630 CKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRL 689

Query: 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVH 585
            A+ ++ + PE+  AYVLLSNMYA +G W + A +R  +N++ +KK PG S IEV +  +
Sbjct: 690 AAEKIIAMIPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTY 749

Query: 586 EFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAI 645
            FL GD+ HP    IY  L+++   L+  G+ PDTS VL D+D+E KE  L+ HSE+LAI
Sbjct: 750 AFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAI 809

Query: 646 AYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHF-KDGNCSCN 704
           A+GLI+T  G+ + I+KNLRVCG+CH   KLI+KI  REI+ RD NRFHHF  DG CSC 
Sbjct: 810 AFGLIATPKGSPLLIIKNLRVCGDCHVVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCG 869

Query: 705 DYW 707
           D+W
Sbjct: 870 DFW 872



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 136/478 (28%), Positives = 248/478 (51%), Gaps = 19/478 (3%)

Query: 47  KQVHSQIIKTG-LHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           +Q+H Q IK G L +     S +      S F D      VF+ ++E N V W  +I G+
Sbjct: 117 RQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKD---GRNVFDEMKERNVVTWTTLISGY 173

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
           + +S     +  ++RM   G  PN++TF   L   A+      G Q+H  V+K GL+   
Sbjct: 174 ARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTI 233

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
            V  SLIN+Y + G +  AR++F+K+ ++  V++ ++I+GYA+ G   +A  +F  M  R
Sbjct: 234 PVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSM--R 291

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWV-CSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
             +   +ES+  +++  CA++  L     + CS+++ +G   + ++  AL+  YSKC  +
Sbjct: 292 LNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVK-YGFVFDQNIRTALMVAYSKCMAM 350

Query: 285 VKARDLF-ESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           + A  LF E+    +V+SW  MI G+      +EA+ LF +M +  + PN+ T+  +L A
Sbjct: 351 LDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTA 410

Query: 344 CAYLGALDLGKWIHAYIDK-NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
              +   +    +HA + K N+++ + V   T+L+D Y K G +  A +VF G+  K + 
Sbjct: 411 LPVISPSE----VHAQVVKTNYERSSTVG--TALLDAYVKLGKVDEAAKVFSGIDNKDIV 464

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC-NHAGLLDIGRQYFNA 461
           +W+AM++G A  G+ + A+ +FS +   G++P++ TF  +L+ C      +  G+Q+   
Sbjct: 465 AWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGF 524

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
            I+  ++   L     ++ +  + G  + AE + K    K D   W S++     HG+
Sbjct: 525 AIKS-RLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREK-DLVSWNSMISGYAQHGQ 580



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 121/443 (27%), Positives = 221/443 (49%), Gaps = 10/443 (2%)

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKS 139
           L YA  +F+   + ++  + +++ G S       A + ++ +   G   +   F  +LK 
Sbjct: 47  LYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKV 106

Query: 140 CAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSY 199
            A +     G+Q+H   +K G   D  V TSL++ Y +    +  R VF++   R+ V++
Sbjct: 107 SATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTW 166

Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
           T LI+GYA     ++   LF  M +++E   PN  T    L   A  G    G  V +++
Sbjct: 167 TTLISGYARNSLNEEVLTLF--MRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVV 224

Query: 260 EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEAL 319
             +GL   + V+N+LI++Y KCG++ KAR LF+  E + V++WN MI GY       EAL
Sbjct: 225 VKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEAL 284

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
            +F  M  +++  ++ +F S++  CA L  L   + +H  + K +  + + ++ T+L+  
Sbjct: 285 GMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVK-YGFVFDQNIRTALMVA 343

Query: 380 YAKCGNIKAAEQVFDGMGY-KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
           Y+KC  +  A ++F   G+   + SW AMISG   +   ++A+ LFS M  +G++P++ T
Sbjct: 344 YSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFT 403

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
           +  +L+A       ++  Q       +Y+ S  +     ++D   + G  DEA  +   +
Sbjct: 404 YSVILTALPVISPSEVHAQVVKT---NYERSSTVGT--ALLDAYVKLGKVDEAAKVFSGI 458

Query: 499 EMKPDAAIWTSLLGACRVHGRLE 521
           + K D   W+++L      G  E
Sbjct: 459 DNK-DIVAWSAMLAGYAQAGETE 480



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 164/344 (47%), Gaps = 20/344 (5%)

Query: 176 AQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNEST 235
           A +  L  A  +F+KS  RD  SYT+L+ G++  G   +A +LF  + I+      + S 
Sbjct: 42  ASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLF--LNIQHLGMEMDCSI 99

Query: 236 VVTVLSACAHMGSLELGNWV-CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
             +VL   A +     G  + C  I+  G   ++ V  +L+D Y K  +    R++F+ +
Sbjct: 100 FSSVLKVSATLCDELFGRQLHCQCIK-FGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEM 158

Query: 295 EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGK 354
           ++R+V++W  +I GY   S  +E L LF +M     +PN  TF + L   A  G    G 
Sbjct: 159 KERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGL 218

Query: 355 WIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMH 414
            +H  + KN      + +  SLI++Y KCGN++ A  +FD    K++ +WN+MISG A +
Sbjct: 219 QVHTVVVKNGLD-KTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAAN 277

Query: 415 GKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI-------QDYK 467
           G   +AL +F  M    ++  + +F  ++  C +   L    Q   +++       Q+ +
Sbjct: 278 GLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIR 337

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
            +  + +  CM  L        +A  L K      +   WT+++
Sbjct: 338 TALMVAYSKCMAML--------DALRLFKETGFLGNVVSWTAMI 373


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/678 (36%), Positives = 405/678 (59%), Gaps = 11/678 (1%)

Query: 34  LALLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           L++   C+ + +++    VH  +++  + +     + LI +      GDL  A  +FE +
Sbjct: 205 LSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVM--YGKLGDLYSAERLFENV 262

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
                  W  +I  ++ S     A+  + +M      PN  T   +L +CA++  + EG+
Sbjct: 263 PCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGR 322

Query: 151 QIHAHVLKLGLESD-PFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
            +H  V++  ++ +  F+  +L+ +YA  G L     VF     +  +S+  LI+ +   
Sbjct: 323 SVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRN 382

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
           G  ++A  LF +M  + +  +P+  ++ + LSAC  +   +LG  +   I   G   N  
Sbjct: 383 GQPEEALLLFVQM--QTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTG-NFNDF 439

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           V NALIDMY+KCG +  A  +FE I+++ +++WN MI G++      EA+ LF QM  + 
Sbjct: 440 VQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNC 499

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           ++ + +TFLSV+ AC++LG L+ GKW+H  +     + ++  L T+L DMY+KCG ++ A
Sbjct: 500 VKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSY-LDTALTDMYSKCGELQMA 558

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
             VFD M  +++ SW+ MI+G  MHG+ +  +SLF++M+G G++P+DITF+ +LSAC+HA
Sbjct: 559 HGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHA 618

Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
           G ++ G+ YFN+M  ++ + PK  H+ CMVDLL RAG  + A  ++ ++    +++IW +
Sbjct: 619 GAVEEGKLYFNSM-SEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGA 677

Query: 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
           LL  CR+H R+++ +S+ K+LL+++  + G Y LLSN+YA  G WD    +R+ +  KG+
Sbjct: 678 LLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGL 737

Query: 570 KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE 629
           +KVPG S+IE+   ++ F  GD  H Q+K IY  L+   +L+    +  +    +    +
Sbjct: 738 RKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSK 797

Query: 630 EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
             KE  +  HSEKLAIA+G+I+T+PGTT+RI KNLRVC +CHS  K+ SKI  REII RD
Sbjct: 798 FNKENNVVSHSEKLAIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRD 857

Query: 690 RNRFHHFKDGNCSCNDYW 707
            NRFH F++G+CSCNDYW
Sbjct: 858 LNRFHCFRNGSCSCNDYW 875



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 142/479 (29%), Positives = 245/479 (51%), Gaps = 8/479 (1%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           + L  +C     + Q+H+ +  TGLH    A +KLIE  + +  G    +  VF+T  +P
Sbjct: 5   MPLFRRCATSTTLTQLHAHLFITGLHRHPPASTKLIE--SYAQIGIFESSKRVFDTFPKP 62

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVP-NTYTFPFILKSCAKISAISEGKQI 152
           +  +W  +I+ +        A+  Y  M+       + + FP +LK+C+    +S G ++
Sbjct: 63  DSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKV 122

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H  V+K G ESD  V TSL+ MY +   L+ A   F+   +RD V++++++  +   G  
Sbjct: 123 HGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQA 182

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
            +   +F +M    E   P+  T+++V  AC+ +GSL LG  V   +    + SN  + N
Sbjct: 183 SEGLDMFSQMI--SEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNN 240

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           +LI MY K GDL  A  LFE++  R    W  MI  Y  +  ++EAL +F +M +  +EP
Sbjct: 241 SLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEP 300

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N VT + VL ACA LG +  G+ +H ++ +         L  +L+++YA  GN++   +V
Sbjct: 301 NQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKV 360

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F+ +  KT+ SWN +IS    +G+ ++AL LF +M  +GL PD  +    LSAC      
Sbjct: 361 FETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFS 420

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
            +G Q    +I+    +  +Q+   ++D+  + G    A  + + ++ K     W S++
Sbjct: 421 QLGAQIHGYIIKTGNFNDFVQN--ALIDMYAKCGFVHSANKMFEKIKEK-SLVTWNSMI 476


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 261/681 (38%), Positives = 387/681 (56%), Gaps = 13/681 (1%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           + +L  C   + I   K VH   +K  L       + L+++   S  G ++ A ++F+  
Sbjct: 296 VTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDM--YSKCGCITNAQMIFKMN 353

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG--FVPNTYTFPFILKSCAKISAISE 148
              N V WN ++ G S             +M+  G     +  T    +  C   S +  
Sbjct: 354 NNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPS 413

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
            K++H + LK     +  V  + +  YA+ G L  A+ VF+    +   S+ ALI G+A 
Sbjct: 414 LKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQ 473

Query: 209 RGYLDDARQLFD-EMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
               +D R   D  + ++    +P+  TV ++LSAC+ + SL LG  V   I  + L  +
Sbjct: 474 S---NDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERD 530

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
           L V  +++ +Y  CG+L   + LF+++E + ++SWN +I GY        AL +FRQM+ 
Sbjct: 531 LFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVL 590

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
             I+   ++ + V  AC+ L +L LG+  HAY  K H   ++  +  SLIDMYAK G+I 
Sbjct: 591 YGIQLCGISMMPVFGACSLLPSLRLGREAHAYALK-HLLEDDAFIACSLIDMYAKNGSIT 649

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
            + +VF+G+  K+ ASWNAMI G  +HG A +A+ LF  M   G  PDD+TF+GVL+ACN
Sbjct: 650 QSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACN 709

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA-EALLKTMEMKPDAAI 506
           H+GL+  G +Y + M   + + P L+HY C++D+LGRAG  D+A   + + M  + D  I
Sbjct: 710 HSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGI 769

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
           W SLL +CR+H  LE+GE VA  L ELEPE P  YVLLSN+YAG G+W+DV  +R R+N+
Sbjct: 770 WKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNE 829

Query: 567 KGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYD 626
             ++K  GCS IE+   V  F+VG++     + I  +   ++  + K G+ PDT  V +D
Sbjct: 830 MSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHD 889

Query: 627 MDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREII 686
           + EE K   L  HSEKLA+ YGLI T  GTTIR+ KNLR+C +CH+A KLISK+  REI+
Sbjct: 890 LSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIV 949

Query: 687 ARDRNRFHHFKDGNCSCNDYW 707
            RD  RFHHFK+G CSC DYW
Sbjct: 950 VRDNKRFHHFKNGVCSCGDYW 970



 Score =  211 bits (536), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 174/648 (26%), Positives = 303/648 (46%), Gaps = 73/648 (11%)

Query: 20  SSDPPYKLLQNQPSLALLS--KCTNMQNIKQVHSQII-KTGLHNTQFALSKLIEICAVSP 76
           SS   + L++    L L +  K  +++  +++H  +   T L N     +++I + A+  
Sbjct: 75  SSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCG 134

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI-LSGFVPNTYTFPF 135
             D S    VF+ +R  N   WN +I  +S +      ++ ++ MI  +  +P+ +T+P 
Sbjct: 135 SPDDSR--FVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPC 192

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           ++K+CA +S +  G  +H  V+K GL  D FV  +L++ Y  +G +  A  +F+    R+
Sbjct: 193 VIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERN 252

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREEN----FVPNESTVVTVLSACAHMGSLEL 251
            VS+ ++I  ++  G+ +++  L  EM   EEN    F+P+ +T+VTVL  CA    + L
Sbjct: 253 LVSWNSMIRVFSDNGFSEESFLLLGEM--MEENGDGAFMPDVATLVTVLPVCAREREIGL 310

Query: 252 GNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311
           G  V        L   L + NAL+DMYSKCG +  A+ +F+    ++V+SWN M+GG++ 
Sbjct: 311 GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 370

Query: 312 TSDYKEALMLFRQMLQ--SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNN 369
             D      + RQML    +++ ++VT L+ +P C +   L   K +H Y  K     N 
Sbjct: 371 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNE 430

Query: 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG 429
           + +  + +  YAKCG++  A++VF G+  KT+ SWNA+I G A       +L    +M  
Sbjct: 431 L-VANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKI 489

Query: 430 EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489
            GL PD  T   +LSAC+    L +G++    +I+++ +   L  Y  ++ L    G   
Sbjct: 490 SGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNW-LERDLFVYLSVLSLYIHCGELC 548

Query: 490 EAEALLKTMEMK-----------------PDAAI-----------------WTSLLGACR 515
             +AL   ME K                 PD A+                    + GAC 
Sbjct: 549 TVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACS 608

Query: 516 VHGRLELGES----VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
           +   L LG        KHLLE   ++      L +MYA  G     + +   L +K    
Sbjct: 609 LLPSLRLGREAHAYALKHLLE---DDAFIACSLIDMYAKNGSITQSSKVFNGLKEKST-- 663

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPD 619
                     +  +  ++G  +H  +K   ++ +E    ++++G  PD
Sbjct: 664 ----------ASWNAMIMGYGIHGLAKEAIKLFEE----MQRTGHNPD 697


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 262/711 (36%), Positives = 385/711 (54%), Gaps = 77/711 (10%)

Query: 71  ICAVSPFGDLSYALLVFETIREPNQ--VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV- 127
           + A +  G L  A   F+ +    +  V+ N ++   + +S    A+  +  ++ SG + 
Sbjct: 101 VAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLR 160

Query: 128 PNTYTFPFILKSCAKIS--AISEGKQIHAHVLKLGL------------------------ 161
           P+ Y+F  ++ +  ++   A     Q+H  VLK G                         
Sbjct: 161 PDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASW 220

Query: 162 ----------ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
                     + D    T+++  Y + G++ +AR VF +   +  V + A+I+GY   G 
Sbjct: 221 DARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGM 280

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV----CSLIEGHGLGSN 267
             DA +LF  M    E    +E T  +VLSACA+ G    G  V      L       + 
Sbjct: 281 CADAFELFRRM--VSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAA 338

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN------------------------ 303
           L V NAL+ +YSK G +V A+ +F+++  +DV+SWN                        
Sbjct: 339 LPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPY 398

Query: 304 -------VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
                  VM+ GY H    ++AL LF QM   +++P D T+   + AC  LGAL  G+ +
Sbjct: 399 KNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQL 458

Query: 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGK 416
           HA++ +   + +N S   +L+ MYAKCG +  A  VF  M      SWNAMIS L  HG 
Sbjct: 459 HAHLVQCGFEASN-SAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGH 517

Query: 417 ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG 476
             +AL LF +M+ EG+ PD I+F+ +L+ACNHAGL+D G  YF +M +D+ ISP   HY 
Sbjct: 518 GREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYA 577

Query: 477 CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536
            ++DLLGR+G   EA  L+KTM  +P  +IW ++L  CR +G +E G   A  L  + P+
Sbjct: 578 RLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQ 637

Query: 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQ 596
           + G Y+LLSN Y+ AGRW D A +R  + D+G+KK PGCS IEVGS +H FLVGD  HP+
Sbjct: 638 HDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPE 697

Query: 597 SKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGT 656
           ++ +Y+ L+ I A + K G+VPDT  VL+DM+   KE  L  HSEKLA+ +GL+   PG 
Sbjct: 698 AQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGA 757

Query: 657 TIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           T+ ++KNLR+CG+CH+A   +SK   REI+ RD  RFHHFKDG CSC +YW
Sbjct: 758 TVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 808



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 113/487 (23%), Positives = 196/487 (40%), Gaps = 111/487 (22%)

Query: 139 SCAKISAISEGKQIHAHVLKLGL---ESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           +C   S +   + +HA +L   L    S P +   LI++Y  + +L +   +F       
Sbjct: 34  TCPSSSFLRALRCLHARLLTADLLHAPSHPHLTLRLIHLYTLSPDLATPAALFRSDPDPG 93

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFV------------------------- 230
            V+ T+L+  +A+ G L DA   FD +P    + V                         
Sbjct: 94  PVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHAL 153

Query: 231 -------PNESTVVTVLSACAHMGSLELGNWV---CSLIEGHGLGSNLHVTNALIDMYSK 280
                  P++ +   ++SA   M +L   +     CS+++  G  + L V+NALI +Y K
Sbjct: 154 LGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKS-GAAAVLSVSNALIALYMK 212

Query: 281 CGDLVK---ARDLFESIEKRDVISWNVMIGGYTHTSDYK--------------------- 316
           C        AR + + +  +D ++W  M+ GY    D                       
Sbjct: 213 CDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMI 272

Query: 317 ----------EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK---N 363
                     +A  LFR+M+   +  ++ TF SVL ACA  G    GK +H  I +   N
Sbjct: 273 SGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPN 332

Query: 364 HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA----------------- 406
                 + +  +L+ +Y+K G I  A+++FD M  K + SWN                  
Sbjct: 333 FVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEV 392

Query: 407 --------------MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
                         M+SG    G ++ AL LF++M  E ++P D T+ G ++AC   G L
Sbjct: 393 FKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGAL 452

Query: 453 DIGRQYFNAMIQ-DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
             GRQ    ++Q  ++ S    +   ++ +  + G  ++A  +   M    D+  W +++
Sbjct: 453 KHGRQLHAHLVQCGFEASNSAGN--ALLTMYAKCGAVNDARLVFLVMP-NLDSVSWNAMI 509

Query: 512 GACRVHG 518
            A   HG
Sbjct: 510 SALGQHG 516



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 164/351 (46%), Gaps = 24/351 (6%)

Query: 14  ILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICA 73
           I+   P+  P   L  N   + L SK   +   K++   +    + +    LS  I+   
Sbjct: 326 IIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDS-- 383

Query: 74  VSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTF 133
               G L  A+ VF+ +   N + W  ++ G+        A+K + +M      P  YT+
Sbjct: 384 ----GCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTY 439

Query: 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL 193
              + +C ++ A+  G+Q+HAH+++ G E+      +L+ MYA+ G +  ARLVF     
Sbjct: 440 AGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPN 499

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG- 252
            D+VS+ A+I+     G+  +A +LFD+M    E   P+  + +T+L+AC H G ++ G 
Sbjct: 500 LDSVSWNAMISALGQHGHGREALELFDQM--VAEGIDPDRISFLTILTACNHAGLVDEGF 557

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVIS-WNVMIGGYTH 311
           ++  S+    G+         LID+  + G + +ARDL +++      S W  ++ G   
Sbjct: 558 HYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRT 617

Query: 312 TSDYK----EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
             D +     A  LFR + Q     +D T+  +L +  Y  A   G+W+ A
Sbjct: 618 NGDMEFGAYAADQLFRMIPQ-----HDGTY--ILLSNTYSAA---GRWVDA 658


>gi|296089060|emb|CBI38763.3| unnamed protein product [Vitis vinifera]
          Length = 719

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 258/674 (38%), Positives = 383/674 (56%), Gaps = 70/674 (10%)

Query: 71  ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNT 130
           I A +  G L+ A  +F      + + W+++I G+      V A++ +  M   G  PN 
Sbjct: 79  IGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQ 138

Query: 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK 190
           +T+  +L+ C+    + +GKQIHAH +K   +S+ FV T L++MYA+   +  A  +F  
Sbjct: 139 FTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFEL 198

Query: 191 S-SLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL 249
           +   R+ V +TA++TGY+  G    A + F +M  R E    N+ T  ++L+AC  + + 
Sbjct: 199 APDKRNHVLWTAMVTGYSQNGDGHKAIECFRDM--RGEGIECNQFTFPSILTACGSISAC 256

Query: 250 ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309
             G  V   I   G G+N+ V +AL+DMYSKCGDL  AR + E++E  D +SWN MI G 
Sbjct: 257 GFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGC 316

Query: 310 THTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNN 369
                 +EAL LFR M   +++ ++ T+ S++                          NN
Sbjct: 317 VRQGLGEEALSLFRIMHLRHMKIDEFTYPSLV--------------------------NN 350

Query: 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG 429
                +L+DMYAK G    A  VF+ M  K + SW ++++G   +G  ++AL LF  M  
Sbjct: 351 -----ALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRI 405

Query: 430 EGLQPDDITFVGVLSACNHA---------------------GLLDI-------------- 454
            G+ PD I    VLSA +++                      + D+              
Sbjct: 406 MGIHPDQIVIAAVLSALDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNG 465

Query: 455 -GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
            GR YF +M + Y I P  +HY CM+DLLGR+G   EA+ LL  M ++PDA +W +LL A
Sbjct: 466 RGRDYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAA 525

Query: 514 CRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVP 573
           CRVHG +ELGE  A +L ELEP+N   YVLLSN+Y+ AG+W++ A  R  +  +G+ K P
Sbjct: 526 CRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEP 585

Query: 574 GCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKE 633
           GCS IE+ S VH F+  D+ HP++  IY  +DEI  L++++G+VPD +  L+DMDEE KE
Sbjct: 586 GCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEGKE 645

Query: 634 GALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRF 693
             L++HSEKLA+A+GL++  PG  IRI KNLR+CG+CH+A K +S +F+R +I RD N F
Sbjct: 646 LGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSNCF 705

Query: 694 HHFKDGNCSCNDYW 707
           HHF++G CSC+DYW
Sbjct: 706 HHFREGACSCSDYW 719



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/399 (29%), Positives = 190/399 (47%), Gaps = 48/399 (12%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGL------------ESDPFVHTSLINMYAQNGELES 183
            + SC  + + S+   + +++ K G             + D     ++I  YA +G L  
Sbjct: 31  FVNSCGTVHSSSDSNWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNE 90

Query: 184 ARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC 243
           AR +F ++ +R  +++++LI+GY   G   +A +LF EM    E   PN+ T  +VL  C
Sbjct: 91  ARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER--PNQFTWGSVLRVC 148

Query: 244 AHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFE-SIEKRDVISW 302
           +    LE G  + +        SN  V   L+DMY+KC  +++A  LFE + +KR+ + W
Sbjct: 149 SMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLW 208

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
             M+ GY+   D  +A+  FR M    IE N  TF S+L AC  + A   G  +H  I +
Sbjct: 209 TAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVR 268

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALS 422
           +     NV + ++L+DMY+KCG++  A ++ + M      SWN+MI G    G  ++ALS
Sbjct: 269 SGFGA-NVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALS 327

Query: 423 LFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482
           LF  M    ++ D+ T+  +++               NA                +VD+ 
Sbjct: 328 LFRIMHLRHMKIDEFTYPSLVN---------------NA----------------LVDMY 356

Query: 483 GRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
            + G FD A  + + M  K D   WTSL+  C  +G  E
Sbjct: 357 AKRGYFDYAFDVFEKMTDK-DVISWTSLVTGCVHNGSYE 394



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 126/463 (27%), Positives = 199/463 (42%), Gaps = 64/463 (13%)

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
           R V +  ++  +     +++  +  G +DDAR+LFD MP R+E                 
Sbjct: 30  RFVNSCGTVHSSSDSNWVLSNLSKCGRVDDARKLFDVMPDRDE----------------- 72

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
                      CS              N +I  Y+  G L +AR LF     R  I+W+ 
Sbjct: 73  -----------CSW-------------NTMIGAYANSGRLNEARKLFYETPIRSCITWSS 108

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           +I GY       EAL LF +M      PN  T+ SVL  C+    L+ GK IHA+  K  
Sbjct: 109 LISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKT- 167

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFD-GMGYKTLASWNAMISGLAMHGKADKALSL 423
           Q  +N  + T L+DMYAKC  I  AE +F+     +    W AM++G + +G   KA+  
Sbjct: 168 QFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIEC 227

Query: 424 FSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLG 483
           F  M GEG++ +  TF  +L+AC        G Q    +++       +     +VD+  
Sbjct: 228 FRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRS-GFGANVFVGSALVDMYS 286

Query: 484 RAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK--HLLELEPENPGAY 541
           + G    A  +L+TME+  D   W S++  C   G  E   S+ +  HL  ++ +     
Sbjct: 287 KCGDLSNARRMLETMEVD-DPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYP 345

Query: 542 VLLSN----MYAGAGRWDDVATIRTRLNDKGM----KKVPGC----SSIEVGSVVHEFLV 589
            L++N    MYA  G +D    +  ++ DK +      V GC    S  E   +  E  +
Sbjct: 346 SLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRI 405

Query: 590 GDKVHPQSKHIYEMLDEID----ALLEKSGFVPDTSEVLYDMD 628
              +HP    I  +L  +D    ++  K G + D ++V   M+
Sbjct: 406 MG-IHPDQIVIAAVLSALDNSLVSMYAKCGCIEDANKVFDSME 447


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 250/678 (36%), Positives = 385/678 (56%), Gaps = 12/678 (1%)

Query: 34   LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
            L++L    + +  + +H  ++K G  +     + L+ + A +  G    A LVF+ +   
Sbjct: 358  LSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGA--GRSVEANLVFKQMPTK 415

Query: 94   NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
            + + WN+++         + A+     MI SG   N  TF   L +C       +G+ +H
Sbjct: 416  DLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILH 475

Query: 154  AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
              V+  GL  +  +  +L++MY + GE+  +R V  +   RD V++ ALI GYA     D
Sbjct: 476  GLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPD 535

Query: 214  DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL-ELGNWVCSLIEGHGLGSNLHVTN 272
             A   F  M  R E    N  TVV+VLSAC   G L E G  + + I   G  S+ HV N
Sbjct: 536  KALAAFQTM--RVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKN 593

Query: 273  ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            +LI MY+KCGDL  ++DLF  ++ R++I+WN M+    H    +E L L  +M    +  
Sbjct: 594  SLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSL 653

Query: 333  NDVTFLSVLPACAYLGALDLGKWIHAYIDK---NHQKLNNVSLWTSLIDMYAKCGNIKAA 389
            +  +F   L A A L  L+ G+ +H    K    H       ++ +  DMY+KCG I   
Sbjct: 654  DQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSF----IFNAAADMYSKCGEIGEV 709

Query: 390  EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
             ++      ++L SWN +IS L  HG  ++  + F  M+  G++P  +TFV +L+AC+H 
Sbjct: 710  VKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHG 769

Query: 450  GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
            GL+D G  Y++ + +D+ + P ++H  C++DLLGR+G   EAE  +  M MKP+  +W S
Sbjct: 770  GLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRS 829

Query: 510  LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
            LL +C++HG L+ G   A++L +LEPE+   YVL SNM+A  GRW+DV  +R ++  K +
Sbjct: 830  LLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNI 889

Query: 570  KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE 629
            KK   CS +++   V  F +GD+ HPQ+  IY  L++I  L+++SG+V DTS+ L D DE
Sbjct: 890  KKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDE 949

Query: 630  EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
            E KE  L +HSE+LA+AY L+ST  G+T+RI KNLR+C +CHS  K +S++  R I+ RD
Sbjct: 950  EQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRD 1009

Query: 690  RNRFHHFKDGNCSCNDYW 707
            + RFHHF+ G CSC DYW
Sbjct: 1010 QYRFHHFERGLCSCKDYW 1027



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 135/482 (28%), Positives = 227/482 (47%), Gaps = 36/482 (7%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSL 107
           QVH  + K+GL +  +  + ++ +  V  +G +S +  VFE + + N V W +++ G+S 
Sbjct: 195 QVHGFVAKSGLLSDVYVSTAILHLYGV--YGLVSCSRKVFEEMPDRNVVSWTSLMVGYSD 252

Query: 108 SSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFV 167
              P   I  Y                            S G+QI   V+K GLES   V
Sbjct: 253 KGEPEEVIDIY-------------------------KDESLGRQIIGQVVKSGLESKLAV 287

Query: 168 HTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREE 227
             SLI+M    G ++ A  +F++ S RD +S+ ++   YA  G+++++ ++F  M  R  
Sbjct: 288 ENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLM--RRF 345

Query: 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA 287
           +   N +TV T+LS   H+   + G  +  L+   G  S + V N L+ MY+  G  V+A
Sbjct: 346 HDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEA 405

Query: 288 RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347
             +F+ +  +D+ISWN ++  + +     +AL L   M+ S    N VTF S L AC   
Sbjct: 406 NLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTP 465

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
              + G+ +H  +  +    N + +  +L+ MY K G +  + +V   M  + + +WNA+
Sbjct: 466 DFFEKGRILHGLVVVSGLFYNQI-IGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNAL 524

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG-LLDIGRQYFNAMIQDY 466
           I G A     DKAL+ F  M  EG+  + IT V VLSAC   G LL+ G+   +A I   
Sbjct: 525 IGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKP-LHAYIVSA 583

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
                      ++ +  + G    ++ L   ++ + +   W ++L A   HG    GE V
Sbjct: 584 GFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNR-NIITWNAMLAANAHHGH---GEEV 639

Query: 527 AK 528
            K
Sbjct: 640 LK 641



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 122/257 (47%), Gaps = 30/257 (11%)

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
           S LH TN LI+MY+K G +  AR LF+ +  R+ +SWN M+ G      Y E +  FR+M
Sbjct: 106 SVLH-TNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKM 164

Query: 326 LQSNIEPNDVTFLSVLPACAYLGAL-DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
               I+P+     S++ AC   G++   G  +H ++ K+   L++V + T+++ +Y   G
Sbjct: 165 CDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGL-LSDVYVSTAILHLYGVYG 223

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
            +  + +VF+ M  + + SW +++ G +  G+ ++ + ++          D+        
Sbjct: 224 LVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIY---------KDE-------- 266

Query: 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504
                    +GRQ    +++   +  KL     ++ +LG  G  D A  +   M  + D 
Sbjct: 267 --------SLGRQIIGQVVKS-GLESKLAVENSLISMLGSMGNVDYANYIFDQMSER-DT 316

Query: 505 AIWTSLLGACRVHGRLE 521
             W S+  A   +G +E
Sbjct: 317 ISWNSIAAAYAQNGHIE 333


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 268/666 (40%), Positives = 375/666 (56%), Gaps = 63/666 (9%)

Query: 51  SQIIKTGLHNTQFALSKLIE----ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           S+ + +  H  +F  + +I     I +    GD+  A+ VFE ++  + V WN+I+   +
Sbjct: 24  SKYVSSHTHQHEFNNNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFA 83

Query: 107 LSSSPVVAIKFYVRMILSGF-VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
                      Y R +      PNT ++  +L +C           +  H  +   +S P
Sbjct: 84  KKPGHFE----YARQLFEKIPQPNTVSYNIML-AC-------HWHHLGVHDARGFFDSMP 131

Query: 166 FVHT----SLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDE 221
                   ++I+  AQ G +  AR +F+    ++ VS++A+++GY + G LD A + F  
Sbjct: 132 LKDVASWNTMISALAQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYA 191

Query: 222 MPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC 281
            P+R         +V+T               W                  A+I  Y K 
Sbjct: 192 APMR---------SVIT---------------W-----------------TAMITGYMKF 210

Query: 282 GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
           G +  A  LF+ +  R +++WN MI GY      ++ L LFR ML++ ++PN ++  SVL
Sbjct: 211 GRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVL 270

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
             C+ L AL LGK +H  + K     ++ +  TSL+ MY+KCG++K A ++F  +  K +
Sbjct: 271 LGCSNLSALQLGKQVHQLVCKCPLS-SDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDV 329

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
             WNAMISG A HG   KAL LF  M  EGL+PD ITFV VL ACNHAGL+D+G QYFN 
Sbjct: 330 VCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNT 389

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
           M +D+ I  K +HY CMVDLLGRAG   EA  L+K+M  KP  AI+ +LLGACR+H  L 
Sbjct: 390 MRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLN 449

Query: 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
           L E  AK+LLEL+P     YV L+N+YA   RWD VA+IR  + D  + K+PG S IE+ 
Sbjct: 450 LAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEIN 509

Query: 582 SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
           SVVH F   D++HP+   I+E L +++  ++ +G+VPD   VL+D+ EE KE  L  HSE
Sbjct: 510 SVVHGFRSSDRLHPELASIHEKLKDLEKKMKLAGYVPDLEFVLHDVGEELKEQLLLWHSE 569

Query: 642 KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
           KLAIA+GL+    G  IR+ KNLRVCG+CHSATK IS I  REII RD  RFHHFKDG C
Sbjct: 570 KLAIAFGLLKVPLGVPIRVFKNLRVCGDCHSATKYISTIEGREIIVRDTTRFHHFKDGFC 629

Query: 702 SCNDYW 707
           SC DYW
Sbjct: 630 SCRDYW 635



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 126/284 (44%), Gaps = 60/284 (21%)

Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
           + L K++ ++  ++    NNV     LI  Y +CG+I +A +VF+ M  K+  +WN++++
Sbjct: 21  VTLSKYVSSHTHQHEFNNNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILA 80

Query: 410 GLAMH-GKADKALSLFSRMIGEGLQPDDITFVGVLSAC--NHAGLLDIGRQYFNAM-IQD 465
             A   G  + A  LF ++     QP+ +++  ++ AC  +H G+ D  R +F++M ++D
Sbjct: 81  AFAKKPGHFEYARQLFEKIP----QPNTVSY-NIMLACHWHHLGVHD-ARGFFDSMPLKD 134

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP-----------------DAAI-- 506
                 +  +  M+  L + GL  EA  L   M  K                  DAA+  
Sbjct: 135 ------VASWNTMISALAQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVEC 188

Query: 507 -----------WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555
                      WT+++      GR+EL E + +   E+       +  +   Y   GR +
Sbjct: 189 FYAAPMRSVITWTAMITGYMKFGRVELAERLFQ---EMSMRTLVTWNAMIAGYVENGRAE 245

Query: 556 DVATIRTRLNDKGMKK--------VPGC---SSIEVGSVVHEFL 588
           D   +   + + G+K         + GC   S++++G  VH+ +
Sbjct: 246 DGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLV 289



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 6/154 (3%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ++L  C+N+  +   KQVH  + K  L +   A + L+ +   S  GDL  A  +F  I 
Sbjct: 268 SVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSM--YSKCGDLKDAWELFIQIP 325

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             + V WN +I G++   +   A++ +  M   G  P+  TF  +L +C     +  G Q
Sbjct: 326 RKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQ 385

Query: 152 IHAHVLK-LGLESDPFVHTSLINMYAQNGELESA 184
               + +  G+E+ P  +  ++++  + G+L  A
Sbjct: 386 YFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEA 419


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 244/605 (40%), Positives = 369/605 (60%), Gaps = 4/605 (0%)

Query: 103 RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE 162
           RG +L    V  ++    M L G     + +   + +C +  A+ EG+Q+HA ++     
Sbjct: 15  RGLALQRCFVAPLRAASGMALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYR 74

Query: 163 SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
              F+ T L+ MY + G L+ AR V ++   R  VS+T +I+GY+      +A  LF +M
Sbjct: 75  PAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKM 134

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
                  +PNE T+ TVL++C+   S+  G  V SL+      S++ V ++L+DMY+K  
Sbjct: 135 L--RAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSE 192

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
           ++ +AR +F+++ +RDV+S   +I GY      +EAL LFRQ+    ++ N VTF +++ 
Sbjct: 193 NIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVT 252

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           A + L +LD GK +HA I +       V+L  SLIDMY+KCG +  + +VFD M  +++ 
Sbjct: 253 ALSGLASLDYGKQVHALILRKELPFF-VALQNSLIDMYSKCGKLLYSRRVFDNMLERSVV 311

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           SWNAM+ G   HG   + +SLF  +  E ++PD +T + VLS C+H GL+D G   F+ +
Sbjct: 312 SWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTV 370

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
           +++        HYGC++DLLGR+G  ++A  L++ M  +   +IW SLLGACRVH  + +
Sbjct: 371 VKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHV 430

Query: 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582
           GE VA+ LLE+EPEN G YV+LSN+YA AG W DV  +R  + +K + K PG S I +  
Sbjct: 431 GELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDK 490

Query: 583 VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEK 642
           V+H F   ++ HP  K I   + EI   ++ +GFVPD S VL+D+D+E KE  L  HSEK
Sbjct: 491 VIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEK 550

Query: 643 LAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCS 702
           LAI +GL++T PG TIR++KNLR+C +CH+  K +SK++ REI  RD+NRFH    GNC+
Sbjct: 551 LAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCT 610

Query: 703 CNDYW 707
           C DYW
Sbjct: 611 CGDYW 615



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 207/370 (55%), Gaps = 6/370 (1%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +QVH+++I        F  ++L+ +      G L  A  V + + E + V W  +I G+S
Sbjct: 62  RQVHARMITARYRPAVFLGTRLVTMYVRC--GALDDARNVLDRMPERSVVSWTTMISGYS 119

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +   V A+  +++M+ +G +PN YT   +L SC+   +I +GKQ+H+ ++K   ES  F
Sbjct: 120 QTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMF 179

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V +SL++MYA++  ++ AR VF+    RD VS TA+I+GYA +G  ++A  LF ++    
Sbjct: 180 VGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQL--YS 237

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           E    N  T  T+++A + + SL+ G  V +LI    L   + + N+LIDMYSKCG L+ 
Sbjct: 238 EGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLY 297

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           +R +F+++ +R V+SWN M+ GY       E + LF+  L   ++P+ VT L+VL  C++
Sbjct: 298 SRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKD-LHKEVKPDSVTLLAVLSGCSH 356

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WN 405
            G +D G  I   + K    L +   +  +ID+  + G ++ A  + + M +++  S W 
Sbjct: 357 GGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWG 416

Query: 406 AMISGLAMHG 415
           +++    +H 
Sbjct: 417 SLLGACRVHA 426


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 261/681 (38%), Positives = 387/681 (56%), Gaps = 13/681 (1%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           + +L  C   + I   K VH   +K  L       + L+++   S  G ++ A ++F+  
Sbjct: 46  VTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDM--YSKCGCITNAQMIFKMN 103

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG--FVPNTYTFPFILKSCAKISAISE 148
              N V WN ++ G S             +M+  G     +  T    +  C   S +  
Sbjct: 104 NNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPS 163

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
            K++H + LK     +  V  + +  YA+ G L  A+ VF+    +   S+ ALI G+A 
Sbjct: 164 LKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQ 223

Query: 209 RGYLDDARQLFD-EMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
               +D R   D  + ++    +P+  TV ++LSAC+ + SL LG  V   I  + L  +
Sbjct: 224 S---NDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERD 280

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
           L V  +++ +Y  CG+L   + LF+++E + ++SWN +I GY        AL +FRQM+ 
Sbjct: 281 LFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVL 340

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
             I+   ++ + V  AC+ L +L LG+  HAY  K H   ++  +  SLIDMYAK G+I 
Sbjct: 341 YGIQLCGISMMPVFGACSLLPSLRLGREAHAYALK-HLLEDDAFIACSLIDMYAKNGSIT 399

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
            + +VF+G+  K+ ASWNAMI G  +HG A +A+ LF  M   G  PDD+TF+GVL+ACN
Sbjct: 400 QSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACN 459

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA-EALLKTMEMKPDAAI 506
           H+GL+  G +Y + M   + + P L+HY C++D+LGRAG  D+A   + + M  + D  I
Sbjct: 460 HSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGI 519

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
           W SLL +CR+H  LE+GE VA  L ELEPE P  YVLLSN+YAG G+W+DV  +R R+N+
Sbjct: 520 WKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNE 579

Query: 567 KGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYD 626
             ++K  GCS IE+   V  F+VG++     + I  +   ++  + K G+ PDT  V +D
Sbjct: 580 MSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHD 639

Query: 627 MDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREII 686
           + EE K   L  HSEKLA+ YGLI T  GTTIR+ KNLR+C +CH+A KLISK+  REI+
Sbjct: 640 LSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIV 699

Query: 687 ARDRNRFHHFKDGNCSCNDYW 707
            RD  RFHHFK+G CSC DYW
Sbjct: 700 VRDNKRFHHFKNGVCSCGDYW 720



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 117/434 (26%), Positives = 223/434 (51%), Gaps = 17/434 (3%)

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILS----GFVPNTYTFPFILKSCAKISAISEG 149
           N V WN++IR  S +     +      M+       F+P+  T   +L  CA+   I  G
Sbjct: 2   NFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLG 61

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           K +H   +KL L+ +  ++ +L++MY++ G + +A+++F  ++ ++ VS+  ++ G+++ 
Sbjct: 62  KGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAE 121

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL-ELGNWVCSLIEGHGLGSNL 268
           G       +  +M    E+   +E T++  +  C H   L  L    C  ++   + + L
Sbjct: 122 GDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNEL 181

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
            V NA +  Y+KCG L  A+ +F  I  + V SWN +IGG+  ++D + +L    QM  S
Sbjct: 182 -VANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKIS 240

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            + P+  T  S+L AC+ L +L LGK +H +I +N  +  ++ ++ S++ +Y  CG +  
Sbjct: 241 GLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLE-RDLFVYLSVLSLYIHCGELCT 299

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
            + +FD M  K+L SWN +I+G   +G  D+AL +F +M+  G+Q   I+ + V  AC+ 
Sbjct: 300 VQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSL 359

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQ---HYGC-MVDLLGRAGLFDEAEALLKTMEMKPDA 504
              L +GR+        Y +   L+      C ++D+  + G   ++  +   ++ K  A
Sbjct: 360 LPSLRLGRE-----AHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTA 414

Query: 505 AIWTSLLGACRVHG 518
           + W +++    +HG
Sbjct: 415 S-WNAMIMGYGIHG 427



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 129/470 (27%), Positives = 214/470 (45%), Gaps = 67/470 (14%)

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREEN----FVPNESTVVTVLSACAHMGSL 249
           R+ VS+ ++I  ++  G+ +++  L  EM   EEN    F+P+ +T+VTVL  CA    +
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEM--MEENGDGAFMPDVATLVTVLPVCAREREI 58

Query: 250 ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309
            LG  V        L   L + NAL+DMYSKCG +  A+ +F+    ++V+SWN M+GG+
Sbjct: 59  GLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGF 118

Query: 310 THTSDYKEALMLFRQMLQ--SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
           +   D      + RQML    +++ ++VT L+ +P C +   L   K +H Y  K     
Sbjct: 119 SAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVY 178

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
           N + +  + +  YAKCG++  A++VF G+  KT+ SWNA+I G A       +L    +M
Sbjct: 179 NEL-VANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQM 237

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
              GL PD  T   +LSAC+    L +G++    +I+++ +   L  Y  ++ L    G 
Sbjct: 238 KISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNW-LERDLFVYLSVLSLYIHCGE 296

Query: 488 FDEAEALLKTMEMK-----------------PDAAI-----------------WTSLLGA 513
               +AL   ME K                 PD A+                    + GA
Sbjct: 297 LCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGA 356

Query: 514 CRVHGRLELGES----VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
           C +   L LG        KHLLE   ++      L +MYA  G     + +   L +K  
Sbjct: 357 CSLLPSLRLGREAHAYALKHLLE---DDAFIACSLIDMYAKNGSITQSSKVFNGLKEKST 413

Query: 570 KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPD 619
                       +  +  ++G  +H  +K   ++ +E    ++++G  PD
Sbjct: 414 ------------ASWNAMIMGYGIHGLAKEAIKLFEE----MQRTGHNPD 447


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 251/668 (37%), Positives = 394/668 (58%), Gaps = 9/668 (1%)

Query: 42  NMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNI 101
           ++  ++ VH+ +IK+G  +  F   KLI+       G L+ A  +F+ +   + V WN++
Sbjct: 16  SLTTLRAVHTNVIKSGF-SYSFLGHKLID--GYIKCGSLAEARKLFDELPSRHIVTWNSM 72

Query: 102 IRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGL 161
           I  H        A++FY  M++ G +P+ YTF  I K+ +++  I  G++ H   + LGL
Sbjct: 73  ISSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHGQRAHGLAVVLGL 132

Query: 162 ES-DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD 220
           E  D FV ++L++MYA+  ++  A LVF +   +D V +TALI GYA  G   +A ++F+
Sbjct: 133 EVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEALKIFE 192

Query: 221 EMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK 280
           +M  R     PNE T+  +L  C ++G L  G  +  L+   GL S +    +L+ MYS+
Sbjct: 193 DMVNR--GVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVASQTSLLTMYSR 250

Query: 281 CGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSV 340
           C  +  +  +F  ++  + ++W   + G       + A+ +FR+M++ +I PN  T  S+
Sbjct: 251 CNMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSISPNPFTLSSI 310

Query: 341 LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT 400
           L AC+ L  L++G+ IHA   K     N  +   +LI++Y KCGN+  A  VFD +    
Sbjct: 311 LQACSSLAMLEVGEQIHAITMKLGLDGNKYA-GAALINLYGKCGNMDKARSVFDVLTELD 369

Query: 401 LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFN 460
           + + N+MI   A +G   +AL LF R+   GL P+ +TF+ +L ACN+AGL++ G Q F 
Sbjct: 370 VVAINSMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNNAGLVEEGCQIFA 429

Query: 461 AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRL 520
           ++  ++ I   + H+ CM+DLLGR+   +EA  L++ +   PD  +W +LL +C++HG +
Sbjct: 430 SIRNNHNIELTIDHFTCMIDLLGRSRRLEEAAMLIEEVR-NPDVVLWRTLLNSCKIHGEV 488

Query: 521 ELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEV 580
           E+ E V   +LEL P + G ++LL+N+YA AG+W+ V  +++ + D  +KK P  S ++V
Sbjct: 489 EMAEKVMSKILELAPGDGGTHILLTNLYASAGKWNQVIEMKSTIRDLKLKKSPAMSWVDV 548

Query: 581 GSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHS 640
              VH F+ GD  HP+S  I+EML  +   ++  G+ P+T  VL D+DEE K  +L +HS
Sbjct: 549 DREVHTFMAGDLSHPRSLEIFEMLHGLMKKVKTLGYNPNTRFVLQDLDEEKKISSLYYHS 608

Query: 641 EKLAIAYGLIST-KPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDG 699
           EKLAIAY L  T    TTIRI KNLRVCG+CHS  K +S +  R+IIARD  RFHHFK G
Sbjct: 609 EKLAIAYALWKTIGRTTTIRIFKNLRVCGDCHSWIKFVSLLTGRDIIARDSKRFHHFKGG 668

Query: 700 NCSCNDYW 707
            CSC DYW
Sbjct: 669 LCSCKDYW 676


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 217/478 (45%), Positives = 324/478 (67%), Gaps = 1/478 (0%)

Query: 230 VPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARD 289
           +P+ ST   VL A A +    +G  +  ++   G   +++ + AL+ +Y  C  +  A  
Sbjct: 86  LPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQ 145

Query: 290 LFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA 349
           LF+ + +R+ ++WN +I GYTH   + +A+  FR ML    +P++ T + VL AC++LGA
Sbjct: 146 LFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGA 205

Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
            + GKWIH +I  N  +LN V + T+LIDMYAKCG +   E+VF+ +  K + +WN +IS
Sbjct: 206 FNQGKWIHEFIYHNRLRLN-VFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLIS 264

Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS 469
           G AM+G+ D AL  FSRM+ E  +PD++TF+GVL AC H GL+  GR  F +M Q + + 
Sbjct: 265 GYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQ 324

Query: 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKH 529
           P+++HYGCMVDLLGRAGL +EA  L+++M ++PD  IW +LL ACRVHG  +LGE + K 
Sbjct: 325 PRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKR 384

Query: 530 LLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLV 589
           L+ELEP N   YVLLSN+Y+   RW +V  +R  +N +G++KVPGCSSIE+ +VV+EF+ 
Sbjct: 385 LIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRKVPGCSSIEINNVVYEFVA 444

Query: 590 GDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGL 649
            +   P+ + IY+ LD +   L+++G+V  T   LYD+++E KE ++ +HSEKLA+A+GL
Sbjct: 445 SNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKLALAFGL 504

Query: 650 ISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +++    T+RIVKNLR+C +CH   K++S ++ R I+ RDRNRFHHF +G CSC DYW
Sbjct: 505 LNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 179/350 (51%), Gaps = 27/350 (7%)

Query: 99  NNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLK 158
           N++IR +   +  + ++  +  M     +P++ TFP +LK+ A++     GK IH  V++
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 159 LGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGY-----------A 207
           +G   D +  T+L+++Y     +  A  +F++   R+AV++ ALITGY           A
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDA 177

Query: 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
            RG L D  Q             P+E TVV VLSAC+H+G+   G W+   I  + L  N
Sbjct: 178 FRGMLADGAQ-------------PSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLN 224

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
           + V  ALIDMY+KCG + +   +FE I +++V +WNV+I GY        AL  F +ML 
Sbjct: 225 VFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLM 284

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
            N +P++VTFL VL AC + G +  G+W    + +       +  +  ++D+  + G ++
Sbjct: 285 ENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLE 344

Query: 388 AAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
            A ++   M  +     W A++    +HG       +  R+I   L+P++
Sbjct: 345 EALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLI--ELEPNN 392



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 145/291 (49%), Gaps = 10/291 (3%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEI-CAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           K +H  +I+ G     +  + L+ + C      D S    +F+ + E N V WN +I G+
Sbjct: 109 KMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQ---LFDEMPERNAVTWNALITGY 165

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
           + +   V AI  +  M+  G  P+  T   +L +C+ + A ++GK IH  +    L  + 
Sbjct: 166 THNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNV 225

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           FV T+LI+MYA+ G +     VF +   ++  ++  LI+GYA  G  D A Q F  M + 
Sbjct: 226 FVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLM- 284

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNW-VCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
            ENF P+E T + VL AC H G +  G W   S+ +  GL   +     ++D+  + G L
Sbjct: 285 -ENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLL 343

Query: 285 VKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
            +A +L +S+  + D I W  ++       + K    + +++++  +EPN+
Sbjct: 344 EEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIE--LEPNN 392


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 257/659 (38%), Positives = 392/659 (59%), Gaps = 5/659 (0%)

Query: 49   VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
            VH+   K G     F  S LI+  A S  G +S A  VF+ I   + V W  ++  +S +
Sbjct: 553  VHACACKLGHDRNAFVGSALID--AYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSEN 610

Query: 109  SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVH 168
              P   ++ + +M ++    N +    +L++   +S++  GK IHA  +K   +++  V+
Sbjct: 611  DCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVY 670

Query: 169  TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
             +L++MYA+ G +E ARL F   +  D + ++ +I+ YA     + A +LF  M     +
Sbjct: 671  GALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRM--MRSS 728

Query: 229  FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288
              PNE ++ +VL ACA+M  L+LG  + +     G  S L V NALID+Y+KC D+  + 
Sbjct: 729  VSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSL 788

Query: 289  DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
            ++F S+   + +SWN +I GY+ +   + AL +FR+M  +++    VT+ SVL ACA   
Sbjct: 789  EIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTA 848

Query: 349  ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI 408
            +++    +H  I+K+    + + +  SLID YAKCG I+ A ++F+ +    L SWNA+I
Sbjct: 849  SINHVGQVHCLIEKSTFNSDTI-VSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAII 907

Query: 409  SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
            SG A+HG+A  A  LF  M    ++ +DITFV +LS C   GL+  G   F++M  D+ I
Sbjct: 908  SGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGI 967

Query: 469  SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
             P ++HY C+V LLGRAG  ++A   +  +   P A +W +LL +C VH  +ELG   A+
Sbjct: 968  EPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFSAE 1027

Query: 529  HLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFL 588
             +LE+EP++   YVLLSNMY+ AG  D VA  R  + + G++K PG S +E+   VH F 
Sbjct: 1028 KVLEIEPQDETTYVLLSNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWVEIKGEVHAFS 1087

Query: 589  VGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYG 648
            VG + HP  + I  ML+ ++    + G+VPDT EVL+D++EE K   L  HSE+LA+AYG
Sbjct: 1088 VGSEDHPCMRVINAMLEWLNLKAIREGYVPDTDEVLHDLEEEQKVRMLWVHSERLALAYG 1147

Query: 649  LISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            L+ T PG  IRI+KNLR C +CH+  K+ISKI  +EII RD NRFHHF++G CSC DYW
Sbjct: 1148 LVMTPPGHPIRIMKNLRSCLDCHAIFKVISKIVKQEIIVRDINRFHHFEEGTCSCGDYW 1206



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 145/509 (28%), Positives = 255/509 (50%), Gaps = 45/509 (8%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICA---------VSPFGDLSYALLVFETIREPNQVI 97
           + VH  ++++G       L++L   CA         V PFG    A  VF+ + E N V 
Sbjct: 448 RAVHGHVVRSG------GLARLDLFCANVLLNMYTKVGPFGS---AHRVFDGLPERNMVS 498

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
           +  +++GH+L      A   + R+   G   N +    +LK    +  +     +HA   
Sbjct: 499 FVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACAC 558

Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ 217
           KLG + + FV ++LI+ Y+  G +  AR VF+    +DAV++TA+++ Y+     ++  Q
Sbjct: 559 KLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQ 618

Query: 218 LFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDM 277
           +F +M +       N   + +VL A   + S+ LG  + +        +  HV  AL+DM
Sbjct: 619 IFSKMRVAVSKL--NPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDM 676

Query: 278 YSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTF 337
           Y+KCG++  AR  FE +   DVI W++MI  Y   +  ++A  LF +M++S++ PN+ + 
Sbjct: 677 YAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSL 736

Query: 338 LSVLPACAYLGALDLGKWIHAY-IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
            SVL ACA +  LDLGK IH + I   H+  + + +  +LID+YAKC +++++ ++F  +
Sbjct: 737 SSVLQACANMPLLDLGKQIHNHAIKIGHE--SELFVGNALIDLYAKCSDMESSLEIFSSL 794

Query: 397 GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC------NHAG 450
                 SWN +I G +  G  + ALS+F  M    +    +T+  VL AC      NH G
Sbjct: 795 RDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVG 854

Query: 451 LLD--IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
            +   I +  FN+   D  +S  L      +D   + G   +A  + +T++ + D   W 
Sbjct: 855 QVHCLIEKSTFNS---DTIVSNSL------IDSYAKCGCIRDAREIFETLK-ECDLVSWN 904

Query: 509 SLLGACRVHGRLELGESVAKHLLELEPEN 537
           +++    VHG+     ++A+ L ++  +N
Sbjct: 905 AIISGYAVHGQ----AAMAQELFDMMSKN 929



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 171/340 (50%), Gaps = 9/340 (2%)

Query: 129 NTYTFPFILKSCAKISAISEGKQIHAHVLKLG--LESDPFVHTSLINMYAQNGELESARL 186
           ++Y +  +L+ C        G+ +H HV++ G     D F    L+NMY + G   SA  
Sbjct: 427 DSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHR 486

Query: 187 VFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHM 246
           VF+    R+ VS+  L+ G+A RG  ++A  LF  +  R E    N+  + TVL     M
Sbjct: 487 VFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRL--RWEGHEVNQFVLTTVLKLVVAM 544

Query: 247 GSLEL--GNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
            +L L  G   C+   GH    N  V +ALID YS CG +  AR +F+ I  +D ++W  
Sbjct: 545 DTLGLAWGVHACACKLGH--DRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTA 602

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           M+  Y+     +  L +F +M  +  + N     SVL A   L ++ LGK IHA   K  
Sbjct: 603 MVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTL 662

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF 424
                  ++ +L+DMYAKCGNI+ A   F+ +    +  W+ MIS  A   + ++A  LF
Sbjct: 663 YDTER-HVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELF 721

Query: 425 SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
            RM+   + P++ +   VL AC +  LLD+G+Q  N  I+
Sbjct: 722 IRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIK 761


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 238/557 (42%), Positives = 337/557 (60%), Gaps = 46/557 (8%)

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +HA   KLG       + + I  Y   G +  AR VF+    RD VS+ ++I GYA  G 
Sbjct: 33  LHAVCTKLGFLLCTRTNNAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGD 92

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
           +  A++LF+ +        P   T                  W  S++ G          
Sbjct: 93  VGSAQRLFERV------LAPTPVT------------------WT-SMVAG---------- 117

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
                 + + GD+  AR +FE + +RD++SWN MI G        EAL LFR M++    
Sbjct: 118 ------FCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFV 171

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           PN  T +SVL AC   GAL+ GKW+H +++K   + +   L T+L+DMYAKCG ++ A +
Sbjct: 172 PNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEF-LGTALVDMYAKCGAVELALE 230

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG-LQPDDITFVGVLSACNHAG 450
           VF G+  +   +WNAMI+GLAM+G + KAL +F +M   G + PD++TFVGVL AC+HAG
Sbjct: 231 VFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAG 290

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
            +D G+++F  + Q Y +   L+HY CMVDLL R+G   EA  L+  M MKPD  +W +L
Sbjct: 291 FVDAGKEHFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRAL 350

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           LG CR+H  +++ E+V   + E+E    G +VLLSN+YA  GRW+ V  +R  +  KG++
Sbjct: 351 LGGCRLHKNVKMAENV---ISEMEATCSGDHVLLSNLYAAVGRWNGVEDVRRTMRSKGIE 407

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           K+PGCSS+E+   +HEF+ GDK HP    I+  L EI   +++ G+V +T+EV YD+++E
Sbjct: 408 KIPGCSSVEMDGSIHEFISGDKSHPSYDDIHAKLIEIGGRMQQHGYVTETAEVFYDIEDE 467

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KE AL +HSEKLAIA+GLI   P  TIRIVKNLR C +CHS  KL+SKI++REI+ RDR
Sbjct: 468 EKEQALGYHSEKLAIAFGLIGGPPEATIRIVKNLRFCTDCHSFAKLVSKIYHREIVVRDR 527

Query: 691 NRFHHFKDGNCSCNDYW 707
            RFHHF+ G CSCND+W
Sbjct: 528 ARFHHFRGGACSCNDFW 544



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 127/250 (50%), Gaps = 3/250 (1%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           GD+  A  VFE + E + V WN +I G   +  PV A+  +  M+  GFVPN  T   +L
Sbjct: 122 GDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVL 181

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
            +C    A+  GK +H  V K  L  D F+ T+L++MYA+ G +E A  VF     R+  
Sbjct: 182 SACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLRARNTC 241

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN-WVC 256
           ++ A+I G A  GY   A  +F +M +      P+E T V VL AC+H G ++ G     
Sbjct: 242 TWNAMINGLAMNGYSAKALDMFRQMEL-NGTVAPDEVTFVGVLLACSHAGFVDAGKEHFY 300

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDY 315
           ++ + +G+   L     ++D+ ++ G L +A  L   +  K DV+ W  ++GG     + 
Sbjct: 301 TIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNV 360

Query: 316 KEALMLFRQM 325
           K A  +  +M
Sbjct: 361 KMAENVISEM 370


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 250/678 (36%), Positives = 385/678 (56%), Gaps = 12/678 (1%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L++L    + +  + +H  ++K G  +     + L+ + A +  G    A LVF+ +   
Sbjct: 268 LSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGA--GRSVEANLVFKQMPTK 325

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           + + WN+++         + A+     MI SG   N  TF   L +C       +G+ +H
Sbjct: 326 DLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILH 385

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
             V+  GL  +  +  +L++MY + GE+  +R V  +   RD V++ ALI GYA     D
Sbjct: 386 GLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPD 445

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL-ELGNWVCSLIEGHGLGSNLHVTN 272
            A   F  M  R E    N  TVV+VLSAC   G L E G  + + I   G  S+ HV N
Sbjct: 446 KALAAFQTM--RVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKN 503

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           +LI MY+KCGDL  ++DLF  ++ R++I+WN M+    H    +E L L  +M    +  
Sbjct: 504 SLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSL 563

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDK---NHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           +  +F   L A A L  L+ G+ +H    K    H       ++ +  DMY+KCG I   
Sbjct: 564 DQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSF----IFNAAADMYSKCGEIGEV 619

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
            ++      ++L SWN +IS L  HG  ++  + F  M+  G++P  +TFV +L+AC+H 
Sbjct: 620 VKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHG 679

Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
           GL+D G  Y++ + +D+ + P ++H  C++DLLGR+G   EAE  +  M MKP+  +W S
Sbjct: 680 GLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRS 739

Query: 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
           LL +C++HG L+ G   A++L +LEPE+   YVL SNM+A  GRW+DV  +R ++  K +
Sbjct: 740 LLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNI 799

Query: 570 KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE 629
           KK   CS +++   V  F +GD+ HPQ+  IY  L++I  L+++SG+V DTS+ L D DE
Sbjct: 800 KKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDE 859

Query: 630 EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
           E KE  L +HSE+LA+AY L+ST  G+T+RI KNLR+C +CHS  K +S++  R I+ RD
Sbjct: 860 EQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRD 919

Query: 690 RNRFHHFKDGNCSCNDYW 707
           + RFHHF+ G CSC DYW
Sbjct: 920 QYRFHHFERGLCSCKDYW 937



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 140/482 (29%), Positives = 236/482 (48%), Gaps = 11/482 (2%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSL 107
           QVH  + K+GL +  +  + ++ +  V  +G +S +  VFE + + N V W +++ G+S 
Sbjct: 80  QVHGFVAKSGLLSDVYVSTAILHLYGV--YGLVSCSRKVFEEMPDRNVVSWTSLMVGYSD 137

Query: 108 SSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFV 167
              P   I  Y  M   G   N  +   ++ SC  +   S G+QI   V+K GLES   V
Sbjct: 138 KGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAV 197

Query: 168 HTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREE 227
             SLI+M    G ++ A  +F++ S RD +S+ ++   YA  G+++++ ++F  M  R  
Sbjct: 198 ENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLM--RRF 255

Query: 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA 287
           +   N +TV T+LS   H+   + G  +  L+   G  S + V N L+ MY+  G  V+A
Sbjct: 256 HDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEA 315

Query: 288 RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347
             +F+ +  +D+ISWN ++  + +     +AL L   M+ S    N VTF S L AC   
Sbjct: 316 NLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTP 375

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
              + G+ +H  +  +    N + +  +L+ MY K G +  + +V   M  + + +WNA+
Sbjct: 376 DFFEKGRILHGLVVVSGLFYNQI-IGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNAL 434

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG-LLDIGRQYFNAMIQDY 466
           I G A     DKAL+ F  M  EG+  + IT V VLSAC   G LL+ G+   +A I   
Sbjct: 435 IGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKP-LHAYIVSA 493

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
                      ++ +  + G    ++ L   ++ + +   W ++L A   HG    GE V
Sbjct: 494 GFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNR-NIITWNAMLAANAHHGH---GEEV 549

Query: 527 AK 528
            K
Sbjct: 550 LK 551



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 214/450 (47%), Gaps = 26/450 (5%)

Query: 75  SPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFP 134
           + FG +  A  +F+ +   N+V WN ++ G       +  ++F+ +M   G  P+++   
Sbjct: 3   TKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIA 62

Query: 135 FILKSCAKI-SAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL 193
            ++ +C +  S   EG Q+H  V K GL SD +V T+++++Y   G +  +R VF +   
Sbjct: 63  SLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPD 122

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
           R+ VS+T+L+ GY+ +G  ++   ++  M  R E    NE+++  V+S+C  +    LG 
Sbjct: 123 RNVVSWTSLMVGYSDKGEPEEVIDIYKGM--RGEGVGCNENSMSLVISSCGLLKDESLGR 180

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTS 313
            +   +   GL S L V N+LI M    G++  A  +F+ + +RD ISWN +   Y    
Sbjct: 181 QIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNG 240

Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
             +E+  +F  M + + E N  T  ++L    ++     G+ IH  + K     + V + 
Sbjct: 241 HIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFD-SVVCVC 299

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
            +L+ MYA  G    A  VF  M  K L SWN++++     G++  AL L   MI  G  
Sbjct: 300 NTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKS 359

Query: 434 PDDITFVGVLSACNHAGLLDIGR----------QYFNAMIQDYKISPKLQHYGCMVDLLG 483
            + +TF   L+AC      + GR           ++N +I +            +V + G
Sbjct: 360 VNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGN-----------ALVSMYG 408

Query: 484 RAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
           + G   E+  +L  M  + D   W +L+G 
Sbjct: 409 KIGEMSESRRVLLQMP-RRDVVAWNALIGG 437



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 125/246 (50%), Gaps = 4/246 (1%)

Query: 277 MYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVT 336
           MY+K G +  AR LF+ +  R+ +SWN M+ G      Y E +  FR+M    I+P+   
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 337 FLSVLPACAYLGAL-DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
             S++ AC   G++   G  +H ++ K+   L++V + T+++ +Y   G +  + +VF+ 
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGL-LSDVYVSTAILHLYGVYGLVSCSRKVFEE 119

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
           M  + + SW +++ G +  G+ ++ + ++  M GEG+  ++ +   V+S+C       +G
Sbjct: 120 MPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLG 179

Query: 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACR 515
           RQ    +++   +  KL     ++ +LG  G  D A  +   M  + D   W S+  A  
Sbjct: 180 RQIIGQVVKS-GLESKLAVENSLISMLGSMGNVDYANYIFDQMSER-DTISWNSIAAAYA 237

Query: 516 VHGRLE 521
            +G +E
Sbjct: 238 QNGHIE 243



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 151/348 (43%), Gaps = 41/348 (11%)

Query: 206 YASRGYLDDARQLFDEMPIREE-----------------------------NFVPNESTV 236
           Y   G +  AR LFD MP+R E                                P+   +
Sbjct: 2   YTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVI 61

Query: 237 VTVLSACAHMGSL-ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE 295
            ++++AC   GS+   G  V   +   GL S+++V+ A++ +Y   G +  +R +FE + 
Sbjct: 62  ASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMP 121

Query: 296 KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKW 355
            R+V+SW  ++ GY+   + +E + +++ M    +  N+ +   V+ +C  L    LG+ 
Sbjct: 122 DRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQ 181

Query: 356 IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHG 415
           I   + K+  + + +++  SLI M    GN+  A  +FD M  +   SWN++ +  A +G
Sbjct: 182 IIGQVVKSGLE-SKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNG 240

Query: 416 KADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY 475
             +++  +FS M     + +  T   +LS   H     +  Q +   I    +       
Sbjct: 241 HIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGH-----VDHQKWGRGIHGLVVKMGFDSV 295

Query: 476 GCMVDLLGR----AGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
            C+ + L R    AG   EA  + K M  K D   W SL+ +    GR
Sbjct: 296 VCVCNTLLRMYAGAGRSVEANLVFKQMPTK-DLISWNSLMASFVNDGR 342


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
            sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 261/666 (39%), Positives = 389/666 (58%), Gaps = 10/666 (1%)

Query: 47   KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
            ++VH+ +++ G    + A+S  + +   +  G +  A  VF+ +   +++ WN II    
Sbjct: 402  REVHAHVLRAGHIYRKIAVSNGL-VNMYAKCGAIDKACRVFQLMEARDRISWNTIITALD 460

Query: 107  LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
             +     A+  Y  M  +   P+ +     L SCA +  ++ G+Q+H   +K GL  D  
Sbjct: 461  QNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTS 520

Query: 167  VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS-RGYLDDARQLFDEMPIR 225
            V  +L+ MY + G +     +FN  S  D VS+ +++   AS +  + ++ Q+F  M   
Sbjct: 521  VSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNM--M 578

Query: 226  EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
            +   VPN+ T V  L+A   +  LELG  + S++  HG+  +  V NAL+  Y+K GD+ 
Sbjct: 579  KSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVD 638

Query: 286  KARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
                LF  +  +RD ISWN MI GY +    +EA+     M+ S    +  TF  VL AC
Sbjct: 639  SCERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNAC 698

Query: 345  AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
            A + AL+ G  +HA+  ++H + ++V + ++L+DMY+KCG I  A +VF  M  K   SW
Sbjct: 699  ASVAALERGMEMHAFGLRSHLE-SDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSW 757

Query: 405  NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
            N+MISG A HG   KAL +F  M   G  PD +TFV VLSAC+HAGL++ G  YF  M +
Sbjct: 758  NSMISGYARHGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERGLDYFELM-E 816

Query: 465  DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRV---HGRLE 521
            DY I P+++HY C++DLLGRAG  D+ +  +K M MKP+  IW ++L AC+      +++
Sbjct: 817  DYGILPRIEHYSCVIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKID 876

Query: 522  LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
            LG   ++ LLELEP+NP  YVL S  +A  GRW+D A  R  +    +KK  G S + + 
Sbjct: 877  LGTEASRMLLELEPQNPVNYVLSSKFHAAIGRWEDTAKARAAMKGAAVKKEAGRSWVTLT 936

Query: 582  SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
              VH F+ GD+ HP +K IYE L+ +   +  +G+VP T  VL+D++EE KE  L +HSE
Sbjct: 937  DGVHTFIAGDRSHPNTKEIYEKLNFLIQKIRNAGYVPLTEYVLHDLEEENKEELLRYHSE 996

Query: 642  KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
            KLA+A+ L  +  G  IRI+KNLRVCG+CH+A + IS+I  R+II RD  RFHHFKDG C
Sbjct: 997  KLAVAFVLTRSSSGGPIRIMKNLRVCGDCHTAFRYISQIVGRQIILRDSIRFHHFKDGKC 1056

Query: 702  SCNDYW 707
            SC DYW
Sbjct: 1057 SCGDYW 1062



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 131/491 (26%), Positives = 223/491 (45%), Gaps = 42/491 (8%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           + +H +++K GL +  F  + L+   + +    L  A  VF+ +   N V W  +I GH 
Sbjct: 85  ESLHLEVVKRGLTHDLFLANHLVN--SYAKGARLDAARRVFDGMPGRNAVSWTCLISGHV 142

Query: 107 LSSSPVVAIKFYVRMILSG--FVPNTYTFPFILKSCAKISAISEG--KQIHAHVLKLGLE 162
           LS  P  A   +  M+  G    P ++TF  +L++C        G   Q+H  V K    
Sbjct: 143 LSGLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFT 202

Query: 163 SDPFVHTSLINMYAQN--GELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD 220
           S+  V  +LI+MY     G    A+ VF+ + +RD +++ AL++ YA RG       LF 
Sbjct: 203 SNTTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFR 262

Query: 221 EMPIREEN--FVPNEST-----VVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
            M   +      P E T       T LS+C    SL L + +   +   G  S+L+V +A
Sbjct: 263 AMQYDDSGIELRPTEHTFGSLITATYLSSC----SLGLLDQLFVRVLKSGCSSDLYVGSA 318

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYT---HTSDYKEALMLFRQMLQSNI 330
           L+  +++ G L +A+D++  +++R+ ++ N +I G     H     E  M  R     N+
Sbjct: 319 LVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNV 378

Query: 331 EPNDVTFLSVLPACAYLG----ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
           +    T++ +L A A        L  G+ +HA++ +       +++   L++MYAKCG I
Sbjct: 379 D----TYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAI 434

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
             A +VF  M  +   SWN +I+ L  +G  + A+  +  M    + P +   +  LS+C
Sbjct: 435 DKACRVFQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSC 494

Query: 447 NHAGLLDIGRQYFNAMIQ-----DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK 501
              GLL  G+Q     ++     D  +S  L      V + G  G   E   +  +M   
Sbjct: 495 AGLGLLAAGQQLHCDAVKWGLYLDTSVSNAL------VKMYGECGRMSECWEIFNSMSAH 548

Query: 502 PDAAIWTSLLG 512
            D   W S++G
Sbjct: 549 -DVVSWNSIMG 558



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 196/418 (46%), Gaps = 21/418 (5%)

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           + +H  V+K GL  D F+   L+N YA+   L++AR VF+    R+AVS+T LI+G+   
Sbjct: 85  ESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLS 144

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG--NWVCSLIEGHGLGSN 267
           G  +DA  LF  M        P   T  +VL AC   G   LG    V  L+      SN
Sbjct: 145 GLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSN 204

Query: 268 LHVTNALIDMYSKC--GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
             V NALI MY  C  G  + A+ +F++   RD+I+WN ++  Y    D      LFR M
Sbjct: 205 TTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAM 264

Query: 326 L--QSNIE--PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL-NNVSLWTSLIDMY 380
               S IE  P + TF S++ A  YL +  LG     ++        +++ + ++L+  +
Sbjct: 265 QYDDSGIELRPTEHTFGSLITA-TYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAF 323

Query: 381 AKCGNIKAAEQVFDGMGYKTLASWNAMISGLA--MHGKADKALSLFSRMIGEGLQPDDIT 438
           A+ G +  A+ ++ G+  +   + N +I+GL    HG+A   + + +R   +    +  T
Sbjct: 324 ARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGAR---DSAAVNVDT 380

Query: 439 FVGVLSACNHAGL----LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494
           +V +LSA          L  GR+    +++   I  K+     +V++  + G  D+A  +
Sbjct: 381 YVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRV 440

Query: 495 LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552
            + ME + D   W +++ A   +G  E    +   L+      P  +  +S + + AG
Sbjct: 441 FQLMEAR-DRISWNTIITALDQNGYCE-AAMMNYCLMRQNSIGPSNFAAISGLSSCAG 496


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 261/681 (38%), Positives = 397/681 (58%), Gaps = 18/681 (2%)

Query: 35  ALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIE---ICAVSPFGDLSYALLVFE 88
           +L+++ TN   +  +K +H+ I+K+G   + F   KLI+    C+V     ++ A  +F+
Sbjct: 6   SLIAQFTNKKSLTTLKSLHTHILKSGSLFSFFG-HKLIDGYIKCSV-----ITEARKLFD 59

Query: 89  TIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE 148
            +   + V WN++I  H        AI+ Y  M+  G +P+ YTF  I K+ +++    E
Sbjct: 60  EMPNRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSRE 119

Query: 149 GKQIHAHVLKLGLE-SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA 207
           G++ H   + LG E SD FV T +++MYA+ G+++ AR VF++   +D V +TALI GY 
Sbjct: 120 GQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYN 179

Query: 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
            RG   +A ++F++M        PNE T+ +VL +C ++G L  G  +  L+   GL S 
Sbjct: 180 QRGLDGEALEVFEDMV--GSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESV 237

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
           +    +L+ MYSKC  +  +  +F S+     ++W   I G       + AL +FR+M++
Sbjct: 238 VASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIR 297

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
            +I PN  TF S+L AC+ L  L+ G+ IHA   K      N  +  +LI +Y KCGN++
Sbjct: 298 CSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVD-GNKYVDAALIHLYGKCGNVE 356

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
            A  VF+ +    + S N MI   A +G   +AL LF RM   G +P+ +TF+ +L ACN
Sbjct: 357 KARSVFESLTELDVVSINTMIYAYAQNGFGHEALELFERMKKLGHKPNVVTFISILLACN 416

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
           +AGL++ G Q F+ +  ++ I     HY CM+DLLGRA  F+EA  L++  +  PD   W
Sbjct: 417 NAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEAAMLIEEGK-NPDVIQW 475

Query: 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
            +LL AC++HG +E+ E   K +L+  P + G ++LL+N+YA AG+WD+V  +++   D 
Sbjct: 476 RTLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRDL 535

Query: 568 GMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
            +KK P  S +++   VH F+ GD  HP++  I EML E+   +   G+ PDT  VL D+
Sbjct: 536 RLKKTPAMSWVDIDREVHTFMAGDLSHPRAHEISEMLHELIEKVITLGYNPDTKFVLQDL 595

Query: 628 DEEWKEGALSHHSEKLAIAYGLIST-KPGTTIRIVKNLRVCGNCHSATKLISKIFNREII 686
           +EE K  AL +HSEKLAIA+ L  T    T IRI KNLRVCG+CHS  K +S +  R+II
Sbjct: 596 EEEKKISALYYHSEKLAIAFALWKTCGKNTAIRIFKNLRVCGDCHSWIKFVSLLTGRDII 655

Query: 687 ARDRNRFHHFKDGNCSCNDYW 707
           ARD  RFHHFK G CSC DYW
Sbjct: 656 ARDAKRFHHFKGGICSCKDYW 676


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/517 (45%), Positives = 323/517 (62%), Gaps = 14/517 (2%)

Query: 197 VSYTALITGYASRGY----LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
           VS+TALI  Y   G+    +  AR+ F           P+  T V VL+ACA +  LE G
Sbjct: 7   VSWTALIAAYMDAGHALEAIGVARRAF------ASGMRPDSFTAVRVLTACARVADLETG 60

Query: 253 N--WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYT 310
              W  +  E  G+  ++ V  A +D+Y KCG++ KAR +F+ ++ RD ++W  M+GGY 
Sbjct: 61  EAVWAAARQE-EGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYA 119

Query: 311 HTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNV 370
                +EAL LF  M     +P+  T +  L AC  LGALDLG+     +  + + L N 
Sbjct: 120 SNGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWD-EVLGNP 178

Query: 371 SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE 430
            L T+LIDMYAKCG+   A  VF  M  + +  WNAMI GL M G    A +L  +M   
Sbjct: 179 VLGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKS 238

Query: 431 GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
           G++ +D TF+G+L +C H GL++ GRQYF+ M   Y+ISP+++HYGCMVDL  RAGL +E
Sbjct: 239 GVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEE 298

Query: 491 AEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAG 550
           A  L+  M M  +A +W +LLG C++H   +L E   K L+ LEP N G YV+LSN+Y+ 
Sbjct: 299 AHQLIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGNYVMLSNIYSN 358

Query: 551 AGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDAL 610
           +GRW+D A +R  +  KG++KVP  S +E+   VH+F VGD  HP S  IY  LDE+   
Sbjct: 359 SGRWEDAAKLRLEMKAKGIEKVPASSWVELDGKVHKFYVGDDSHPLSDKIYAKLDELGME 418

Query: 611 LEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNC 670
           ++  G+ P T  V++D++ E KE  L HHSEK+AIA+ LI+T+PG TIR+ KNLRVC +C
Sbjct: 419 MKAMGYEPTTEVVMFDVENEEKENTLVHHSEKIAIAFSLITTEPGETIRVTKNLRVCTDC 478

Query: 671 HSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           HSA KLIS+I  REI+ RD NRFH F+DG+CSCNDYW
Sbjct: 479 HSAIKLISRITCREIVVRDNNRFHCFRDGHCSCNDYW 515



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 181/338 (53%), Gaps = 4/338 (1%)

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
           P+ V W  +I  +  +   + AI    R   SG  P+++T   +L +CA+++ +  G+ +
Sbjct: 4   PSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETGEAV 63

Query: 153 HAHVLKL-GLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
            A   +  G+    FV T+ +++Y + GE+E AR VF++   RDAV++ A++ GYAS G+
Sbjct: 64  WAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYASNGH 123

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
             +A  LF  M +  E   P+  TVV  LSAC  +G+L+LG     ++    +  N  + 
Sbjct: 124 PREALDLFFAMQM--EGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVLG 181

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
            ALIDMY+KCG   +A  +F+ + +RD+I WN MI G   T   K A  L  QM +S ++
Sbjct: 182 TALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGVK 241

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
            ND TF+ +L +C + G ++ G+     +   ++    +  +  ++D++++ G ++ A Q
Sbjct: 242 LNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEAHQ 301

Query: 392 VFDGMGYKTLA-SWNAMISGLAMHGKADKALSLFSRMI 428
           +   M     A  W A++ G  +H  AD A     ++I
Sbjct: 302 LIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLI 339



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 124/257 (48%), Gaps = 6/257 (2%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G++  A  VF+ ++  + V W  ++ G++ +  P  A+  +  M + G  P+ YT    L
Sbjct: 91  GEMEKARSVFDEMKNRDAVAWGAMVGGYASNGHPREALDLFFAMQMEGAKPDCYTVVGAL 150

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
            +C ++ A+  G+Q    V    +  +P + T+LI+MYA+ G    A +VF +   RD +
Sbjct: 151 SACTRLGALDLGRQAVGMVHWDEVLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDII 210

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVC 256
            + A+I G    G+   A  L  +M  ++     N++T + +L +C H G +  G  +  
Sbjct: 211 VWNAMILGLGMTGHEKIAFALVGQM--KKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFH 268

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK-RDVISWNVMIGGYTHTSDY 315
           ++   + +   +     ++D++S+ G L +A  L   +    + + W  ++GG     + 
Sbjct: 269 NMTHVYRISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIHRNA 328

Query: 316 KEALMLFRQMLQSNIEP 332
             A    +Q+++  +EP
Sbjct: 329 DLAEHALKQLIR--LEP 343



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 6/156 (3%)

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
           M + +  SW A+I+     G A +A+ +  R    G++PD  T V VL+AC     L+ G
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG--A 513
              + A  Q+  ++  +      +DL  + G  ++A ++   M+ + DA  W +++G  A
Sbjct: 61  EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNR-DAVAWGAMVGGYA 119

Query: 514 CRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549
              H R  L    A   +++E   P  Y ++  + A
Sbjct: 120 SNGHPREALDLFFA---MQMEGAKPDCYTVVGALSA 152


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 250/714 (35%), Positives = 397/714 (55%), Gaps = 49/714 (6%)

Query: 35  ALLSKCTNMQNIKQ---VHSQIIKTGLHNTQF---ALSKLIEICAVSPFGDLSYALLVFE 88
            +LS C+++Q++K    +H   +K G+    F   AL  L E C       +  A  VF+
Sbjct: 247 CILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLC-----VREAQAVFD 301

Query: 89  TIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE 148
            +   N + WN++   +     P   +  +  M L+G  P+      IL +C+++  +  
Sbjct: 302 LMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKS 361

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           GK IH   +K G+  D FV T+L+N+YA    +  A+ VF+    R+ V++ +L + Y +
Sbjct: 362 GKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVN 421

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
            G+      +F EM +      P+  T++++L AC+ +  L+ G  +      HG+  ++
Sbjct: 422 CGFPQKGLNVFREMVL--NGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDV 479

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN------------------------- 303
            V NAL+ +Y+KC  + +A+ +F+ I  R+V SWN                         
Sbjct: 480 FVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRD 539

Query: 304 ----------VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
                     V+IGG    S  +EA+ +FR+M     +P++ T  S+L AC+    L +G
Sbjct: 540 EVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMG 599

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAM 413
           K IH Y+ + H K  +++   +L+DMYAKCG +  +  VFD M  K + SWN MI    M
Sbjct: 600 KEIHCYVFR-HWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGM 658

Query: 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQ 473
           HG   +ALSLF +M+   ++PD  TF  VLSAC+H+ L++ G Q FN+M +D+ + P+ +
Sbjct: 659 HGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAE 718

Query: 474 HYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL 533
           HY C+VD+  RAG  +EA   ++ M M+P A  W + L  CRV+  +EL +  AK L E+
Sbjct: 719 HYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEI 778

Query: 534 EPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKV 593
           +P     YV L N+   A  W + + IR  + ++G+ K PGCS   VG+ VH F+ GDK 
Sbjct: 779 DPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSWFHVGNRVHTFVAGDKS 838

Query: 594 HPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTK 653
           + +S  IY  LDE+ A ++ +G+ PDT  VL+D+D+E K  +L +HSEKLA+A+G+++  
Sbjct: 839 NMESDKIYNFLDELFAKIKAAGYKPDTDYVLHDIDQEEKAESLCNHSEKLAVAFGILNLN 898

Query: 654 PGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
             +TIR+ KNLR+CG+CH+A K +S +    I+ RD  RFHHFK+GNCSC D+W
Sbjct: 899 GQSTIRVFKNLRICGDCHNAIKYMSNVVGVTIVVRDSLRFHHFKNGNCSCKDFW 952



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 143/595 (24%), Positives = 283/595 (47%), Gaps = 86/595 (14%)

Query: 35  ALLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ++L  C+++Q++K   ++H  +++ G+    F  S  +   A      +  A  VF+ + 
Sbjct: 146 SILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLC--VREAQTVFDLMP 203

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             + V WN++   +     P   +  +  M+L G  P+  T   IL +C+ +  +  GK 
Sbjct: 204 HRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKA 263

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IH   LK G+  + FV  +L+N+Y     +  A+ VF+    R+ +++ +L + Y + G+
Sbjct: 264 IHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGF 323

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
                 +F EM +      P+   + ++L AC+ +  L+ G  +      HG+  ++ V 
Sbjct: 324 PQKGLNVFREMGL--NGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVC 381

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
            AL+++Y+ C  + +A+ +F+ +  R+V++WN +   Y +    ++ L +FR+M+ + ++
Sbjct: 382 TALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVK 441

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+ VT LS+L AC+ L  L  GK IH +  + H  + +V +  +L+ +YAKC  ++ A+ 
Sbjct: 442 PDLVTMLSILHACSDLQDLKSGKVIHGFAVR-HGMVEDVFVCNALLSLYAKCVCVREAQV 500

Query: 392 VFDGMGYKTLASWNAM-----------------------------------ISGLAMHGK 416
           VFD + ++ +ASWN +                                   I G   + +
Sbjct: 501 VFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSR 560

Query: 417 ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG 476
            ++A+ +F +M   G +PD+ T   +L AC+ +  L +G++    + + +K    L    
Sbjct: 561 IEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWK-DWDLARTN 619

Query: 477 CMVDLLGRAG-------LFD------------------------EAEALLKTMEM---KP 502
            +VD+  + G       +FD                        EA +L + M +   KP
Sbjct: 620 ALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKP 679

Query: 503 DAAIWTSLLGACR----VHGRLELGESVAK-HLLELEPENPGAYVLLSNMYAGAG 552
           D+A +T +L AC     V   +++  S+++ HL+E E E+   Y  + ++Y+ AG
Sbjct: 680 DSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEH---YTCVVDIYSRAG 731



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/497 (25%), Positives = 244/497 (49%), Gaps = 38/497 (7%)

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           A  VF+ +   + V WN++   +     P   +  + +M L+    N  T   IL  C+ 
Sbjct: 94  ARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSD 153

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
           +  +  GK+IH  V++ G+  D FV ++ +N YA+   +  A+ VF+    RD V++ +L
Sbjct: 154 LQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSL 213

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
            + Y + G+      +F EM +  +   P+  TV  +LSAC+ +  L+ G  +      H
Sbjct: 214 SSCYVNCGFPQKGLNVFREMVL--DGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKH 271

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
           G+  N+ V+NAL+++Y  C  + +A+ +F+ +  R+VI+WN +   Y +    ++ L +F
Sbjct: 272 GMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVF 331

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
           R+M  + ++P+ +   S+LPAC+ L  L  GK IH +  K H  + +V + T+L+++YA 
Sbjct: 332 REMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVK-HGMVEDVFVCTALVNLYAN 390

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
           C  ++ A+ VFD M ++ + +WN++ S     G   K L++F  M+  G++PD +T + +
Sbjct: 391 CLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSI 450

Query: 443 LSACNHAGLLDIGRQ---------------YFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
           L AC+    L  G+                  NA++  Y     ++    + DL+    +
Sbjct: 451 LHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREV 510

Query: 488 ---------------FDEAEALLKTM---EMKPDAAIWTSLLGACRVHGRLELGESVAKH 529
                          +++   +   M   E+K D   W+ ++G C  + R+E    + + 
Sbjct: 511 ASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRK 570

Query: 530 L--LELEPENPGAYVLL 544
           +  +  +P+    Y +L
Sbjct: 571 MQTMGFKPDETTIYSIL 587



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 220/451 (48%), Gaps = 18/451 (3%)

Query: 111 PVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTS 170
           P  AIK Y      G  P+   F  + K+CA      + KQ H    + G+ SD  +  +
Sbjct: 21  PNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNA 80

Query: 171 LINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV 230
            I+ Y +   +E AR VF+    RD V++ +L   Y + G+      +F +M + +    
Sbjct: 81  FIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVK-- 138

Query: 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDL 290
            N  TV ++L  C+ +  L+ G  +   +  HG+  ++ V++A ++ Y+KC  + +A+ +
Sbjct: 139 ANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTV 198

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350
           F+ +  RDV++WN +   Y +    ++ L +FR+M+   ++P+ VT   +L AC+ L  L
Sbjct: 199 FDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDL 258

Query: 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISG 410
             GK IH +  K H  + NV +  +L+++Y  C  ++ A+ VFD M ++ + +WN++ S 
Sbjct: 259 KSGKAIHGFALK-HGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASC 317

Query: 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF-----NAMIQD 465
               G   K L++F  M   G++PD +    +L AC+    L  G+        + M++D
Sbjct: 318 YVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVED 377

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH-GRLELGE 524
             +   L      V+L        EA+ +   M  + +   W S L +C V+ G  + G 
Sbjct: 378 VFVCTAL------VNLYANCLCVREAQTVFDLMPHR-NVVTWNS-LSSCYVNCGFPQKGL 429

Query: 525 SVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555
           +V + ++ L    P    +LS ++A +   D
Sbjct: 430 NVFREMV-LNGVKPDLVTMLSILHACSDLQD 459



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 86/424 (20%), Positives = 172/424 (40%), Gaps = 80/424 (18%)

Query: 34  LALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           L++L  C+++Q++K    +H   ++ G+    F  + L+ + A      +  A +VF+ I
Sbjct: 448 LSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVC--VREAQVVFDLI 505

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE-- 148
                  WN I+  +  +      +  + +M       +  T+  ++  C K S I E  
Sbjct: 506 PHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAM 565

Query: 149 ---------------------------------GKQIHAHVLKLGLESDPFVHTSLINMY 175
                                            GK+IH +V +   + D     +L++MY
Sbjct: 566 EIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMY 625

Query: 176 AQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNEST 235
           A+ G L  +R VF+   ++D  S+  +I      G   +A  LF++M +      P+ +T
Sbjct: 626 AKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVK--PDSAT 683

Query: 236 VVTVLSACAHMGSLELGNWVC-SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
              VLSAC+H   +E G  +  S+   H +         ++D+YS+ G L +A    + +
Sbjct: 684 FTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRM 743

Query: 295 E-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND----VTFLSVL-------- 341
             +   I+W   + G     + + A +  +++ +  I+PN     VT  ++L        
Sbjct: 744 PMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFE--IDPNGSANYVTLFNILVTAKLWSE 801

Query: 342 ----------------PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
                           P C++     +G  +H ++  +   + +  ++  L +++AK   
Sbjct: 802 ASKIRKLMKERGITKTPGCSW---FHVGNRVHTFVAGDKSNMESDKIYNFLDELFAK--- 855

Query: 386 IKAA 389
           IKAA
Sbjct: 856 IKAA 859



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 111/235 (47%), Gaps = 24/235 (10%)

Query: 15  LHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSK---LIEI 71
           + F P     Y +L+       LS+C  M   K++H  + +   H   + L++   L+++
Sbjct: 574 MGFKPDETTIYSILR----ACSLSECLRMG--KEIHCYVFR---HWKDWDLARTNALVDM 624

Query: 72  CAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTY 131
            A    G LS +  VF+ +   +   WN +I  + +  +   A+  + +M+LS   P++ 
Sbjct: 625 YA--KCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSA 682

Query: 132 TFPFILKSCAKISAISEGKQIHAHVLKLGL-ESDPFVHTSLINMYAQNGELESARLVFNK 190
           TF  +L +C+    + EG QI   + +  L E +   +T ++++Y++ G LE A     +
Sbjct: 683 TFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQR 742

Query: 191 SSLR-DAVSYTALITGYASRGYLD------DARQLFDEMPIREENFVPNESTVVT 238
             +   A+++ A + G   R Y +       A++LF+  P    N+V   + +VT
Sbjct: 743 MPMEPTAIAWKAFLAG--CRVYKNVELAKISAKKLFEIDPNGSANYVTLFNILVT 795


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 242/588 (41%), Positives = 370/588 (62%), Gaps = 13/588 (2%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P  +T+  ++ SC + +++ +G  +H H++  G + DPF+ T LINMY++   +++AR V
Sbjct: 76  PTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSELDSIDNARKV 135

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNES-TVVTVLSAC--- 243
           F+K+  R    + AL       GY  +   L+  M       VP++  T   VL AC   
Sbjct: 136 FDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRM---NRIGVPSDRFTYTYVLKACVAS 192

Query: 244 -AHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
            A +  L  G  +   I  HG   ++H+   L+DMY++ G ++ A  +F+ +  ++V+SW
Sbjct: 193 EAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSW 252

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIE--PNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           + MI  Y+      EAL LFR+M+  N +  PN VT +SVL ACA L AL+ GK +H YI
Sbjct: 253 SAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYI 312

Query: 361 DKNHQKLNNV-SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADK 419
            +  + L+++  + ++L+ +YA+CGN++   +VF+ M  + + SWN++IS   +HG   K
Sbjct: 313 LR--RGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGIHGFGRK 370

Query: 420 ALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479
           A+ +F  MI +GL P  I+FV VL AC+HAGL++ G+  F +M++ +KI P ++HY CMV
Sbjct: 371 AIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMV 430

Query: 480 DLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG 539
           DLLGRA   DEA  ++  M ++P   +W SLLG+CR+H  +EL E     L ELEP N G
Sbjct: 431 DLLGRANRLDEAAKIIDDMRIEPGPKVWGSLLGSCRIHCNVELAERATSRLFELEPTNAG 490

Query: 540 AYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKH 599
            YVLL+++YA A  W++V  ++  L  +G++KVPG S IE+   ++ F+  D+ +PQ + 
Sbjct: 491 NYVLLADIYAEAKMWNEVKRVKMLLEARGLQKVPGRSCIEIRRKIYSFMSVDEFNPQIEQ 550

Query: 600 IYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIR 659
           ++ +L ++   +++ G+VPDT  VLYD+D E KE  +  HSEKLA+A+GLI++K G TIR
Sbjct: 551 LHALLLKLSMEMKEKGYVPDTKVVLYDLDPEEKERIVLGHSEKLALAFGLINSKKGETIR 610

Query: 660 IVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           I KNLR+C +CHS TK ISK  NREI+ RD NRFH F+DG CSC DYW
Sbjct: 611 ITKNLRLCEDCHSVTKFISKFANREILVRDVNRFHLFQDGVCSCGDYW 658



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 217/401 (54%), Gaps = 10/401 (2%)

Query: 36  LLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           L+  CT   ++ Q   +H  +I  G     F  +KLI +   S    +  A  VF+  R+
Sbjct: 84  LILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINM--YSELDSIDNARKVFDKTRK 141

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSC----AKISAISE 148
               +WN + R  +L+      +  Y RM   G   + +T+ ++LK+C    A +S +  
Sbjct: 142 RTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLN 201

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           G++IH H+L+ G E    + T+L++MYA+ G + +A  VF++  +++ VS++A+I  Y+ 
Sbjct: 202 GREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSK 261

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
            G   +A +LF +M +  ++ +PN  T+V+VL ACA + +LE G  +   I   GL S L
Sbjct: 262 NGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRGLDSIL 321

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
            V +AL+ +Y++CG+L     +FE +EKRDV+SWN +I  Y      ++A+ +F++M+  
Sbjct: 322 PVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQ 381

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            + P+ ++F+SVL AC++ G ++ GK +   + + H+   +V  +  ++D+  +   +  
Sbjct: 382 GLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDE 441

Query: 389 AEQVFDGMGYKTLAS-WNAMISGLAMHGKADKALSLFSRMI 428
           A ++ D M  +     W +++    +H   + A    SR+ 
Sbjct: 442 AAKIIDDMRIEPGPKVWGSLLGSCRIHCNVELAERATSRLF 482


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 248/582 (42%), Positives = 354/582 (60%), Gaps = 5/582 (0%)

Query: 128 PNTYT-FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARL 186
           PN+Y  +  +L+SC    ++  G+Q+H  +L  GL  D  + T L+++YA  G +  AR 
Sbjct: 59  PNSYHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARR 118

Query: 187 VFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHM 246
           +F+    R+   +  LI  YA  G  + A QL+  M   +    P+  T    L ACA +
Sbjct: 119 LFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMV--DYGVEPDNFTYPLALKACAAL 176

Query: 247 GSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMI 306
             LE G  V   + G   G ++ V   L+DMY+KCG +  AR +F+ I  RD + WN MI
Sbjct: 177 LDLETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMI 236

Query: 307 GGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK 366
             Y       EAL L R M  + + P   T +S + A A   AL  G+ +H +  +    
Sbjct: 237 AAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFD 296

Query: 367 LNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSR 426
             +  L TSL+DMYAK G ++ A  +F+ +  + L SWNAMI G  MHG  D+AL LF++
Sbjct: 297 RQD-KLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNK 355

Query: 427 MIGEG-LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485
           M  E  + PD+ITFVGVLSACNH G++   +++F  M+  Y I P +QH+ C+VD+LG A
Sbjct: 356 MRVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHA 415

Query: 486 GLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545
           G F+EA  L+K M M+PD+ IW +LL  C++H  +ELGE   + L+ELEPE+ G YVLLS
Sbjct: 416 GRFEEAYDLIKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLS 475

Query: 546 NMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLD 605
           N+YA +G+W+  A +R  + ++G+KK+ GCS IE+    H FLVGD  HP+S  IYE L+
Sbjct: 476 NIYAQSGKWEKAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIYEELE 535

Query: 606 EIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLR 665
            ++ L+  +G++PDT  V +D+ ++ K   +  HSE+LAIA+GLIST  GT + + KNLR
Sbjct: 536 RLEGLMSDAGYMPDTMPVFHDVGDDEKRNMMRSHSERLAIAFGLISTPSGTKLLVTKNLR 595

Query: 666 VCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           VC +CH   KLIS+I  REII RD NR+HHF +G CSC DYW
Sbjct: 596 VCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/407 (28%), Positives = 210/407 (51%), Gaps = 11/407 (2%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ++L  C   +++   +Q+H +++ +GL       +KL+++ A    G + +A  +F+ + 
Sbjct: 67  SVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAAC--GLVGHARRLFDGMP 124

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           + N  +WN +IR ++      VAI+ Y  M+  G  P+ +T+P  LK+CA +  +  G++
Sbjct: 125 KRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGRE 184

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +H  VL      D FV   L++MYA+ G ++ AR VF++  +RD+V + ++I  Y   G 
Sbjct: 185 VHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGR 244

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
             +A  L  +M        P  +T+V+ +SA A   +L  G  +       G      + 
Sbjct: 245 PMEALSLCRDMA--ANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLK 302

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM-LQSNI 330
            +L+DMY+K G +  AR LFE + KR+++SWN MI GY     + EAL LF +M +++ +
Sbjct: 303 TSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQV 362

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
            P+++TF+ VL AC + G +   K     +   +     V  +T L+D+    G  + A 
Sbjct: 363 TPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAY 422

Query: 391 QVFDGMGYKTLAS-WNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
            +  GM  +  +  W A+++G  +H   +       ++I   L+P+D
Sbjct: 423 DLIKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLI--ELEPED 467


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 252/703 (35%), Positives = 393/703 (55%), Gaps = 50/703 (7%)

Query: 41  TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNN 100
           +N + +   H  I K+ L ++ +A  K         F D  +    F++  E   V+   
Sbjct: 5   SNARKLSTFHGLIFKSNLLSSSYASQK--------RFSDKKF----FDSKLEDGGVVVER 52

Query: 101 IIRGHSLSSSPVVA-----IKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAH 155
           + R +    +  V      ++  V+++     P   T+  +++ C++  A+ EGK++H H
Sbjct: 53  LCRANRFGEAIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEH 112

Query: 156 VLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDA 215
           +   G      +   ++ MYA+ G L  AR VF++   RD  S+  ++ GYA  G L++A
Sbjct: 113 IRTSGFVPGIVIWNRILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEA 172

Query: 216 RQLFDEMPIREE------------------------------NFVPNESTVVTVLSACAH 245
           R LFDEMP R+                               N  PN  TV + ++A A 
Sbjct: 173 RNLFDEMPERDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAA 232

Query: 246 MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVM 305
           +  +  G  +   I   GL S+  + ++L+DMY KCG + +AR++F+ I  +DV+SW  M
Sbjct: 233 IKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSM 292

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK-NH 364
           I  Y  +S ++E   LF +++ S   PN+ TF  VL ACA L   +LG+ +H Y+ +   
Sbjct: 293 IDRYFKSSRWREGFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGRQVHGYMTRVGF 352

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF 424
              +  S  +SLIDMY KCGNI++A  V DG     L S  ++I G A +GK D+AL  F
Sbjct: 353 DPYSFAS--SSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYF 410

Query: 425 SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484
             ++  G +PD +TFV VLSAC HAGL++ G ++F ++ + + ++    HY C+VDLL R
Sbjct: 411 DLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDLLAR 470

Query: 485 AGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL 544
           +G F++ +++L  M MKP   +W S+LG C  +G ++L E  A+ L ++EPENP  YV +
Sbjct: 471 SGRFEQLKSVLSEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTM 530

Query: 545 SNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEML 604
           +N+YA AG+W++   +R R+ + G+ K PG S  E+    H F+  D  HP    I E L
Sbjct: 531 ANIYAAAGKWEEEGKMRKRMQEIGITKKPGSSWTEIKRKRHVFIAADTSHPMYNQIIEFL 590

Query: 605 DEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNL 664
            E+   +++ G+VP TS VL+D+++E KE  L +HSEKLA+A+ ++ST+ GT I++ KNL
Sbjct: 591 GELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNL 650

Query: 665 RVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           R C +CHSA K ISKI  R+I  RD  RFH F++G CSC DYW
Sbjct: 651 RSCVDCHSAIKFISKITKRKITIRDSTRFHCFENGQCSCRDYW 693


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/628 (37%), Positives = 384/628 (61%), Gaps = 14/628 (2%)

Query: 90  IREPNQVIWNNII-----RGH-SLSSSPVVAIKFYVR---MILSG-FVPNTYTFPFILKS 139
           +R+P++++ N ++     R + S +++PV A    +R   ++ +G   P    +   + +
Sbjct: 1   MRKPHKLLPNYLLLYRHTRPYTSTAANPVPAASAVLRDLDLLDAGELAPTPRVYHTFITA 60

Query: 140 CAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSY 199
           CA+   + + +++HAH+       D F+  SLI++Y + G +  AR VF++   +D VS+
Sbjct: 61  CAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDMVSW 120

Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
           T+LI GYA     ++A  L   M   +  F PN  T  ++L A        +G  + +L 
Sbjct: 121 TSLIAGYAQNDMPEEAIGLLPGM--LKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALA 178

Query: 260 EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEAL 319
                  +++V +AL+DMY++CG +  A  +F+ ++ ++ +SWN +I G+    D + AL
Sbjct: 179 VKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETAL 238

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
           M F +ML++  E    T+ SV  + A LGAL+ GKW+HA++ K+ QK+   +   +L+DM
Sbjct: 239 MTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFA-GNTLLDM 297

Query: 380 YAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439
           YAK G++  A +VFD +  K L +WN M++  A +G   +A+S F  M   G+  + +TF
Sbjct: 298 YAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTF 357

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME 499
           + +L+AC+H GL+  G++YF  M+++Y + P++ H+  +V LLGRAGL + A   +  M 
Sbjct: 358 LCILTACSHGGLVKEGKRYFE-MMKEYDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMP 416

Query: 500 MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559
           ++P AA+W +LL ACR+H   ++G+  A H+ EL+P++ G  VLL N+YA  G+WD  A 
Sbjct: 417 IEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAAR 476

Query: 560 IRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPD 619
           +R  +   G+KK P CS +E+ + VH F+  D  HP+++ IY+M  +I   + K G+VPD
Sbjct: 477 VRRIMKTTGVKKEPACSWVEMENSVHMFVANDDTHPRAEEIYKMWGQISKKIRKEGYVPD 536

Query: 620 TSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISK 679
              VL  +D++ +E  L +HSEKLA+A+ LI    G TIRI+KN+R+CG+CHSA K ISK
Sbjct: 537 MDYVLLRVDDQEREANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGDCHSAFKYISK 596

Query: 680 IFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +F REI+ RD NRFHHF +G+CSC DYW
Sbjct: 597 VFGREIVVRDTNRFHHFSNGSCSCADYW 624



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/404 (29%), Positives = 205/404 (50%), Gaps = 16/404 (3%)

Query: 38  SKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVI 97
           ++  N+++ ++VH+ +  +      F  + LI +      G +  A  VF+ +R  + V 
Sbjct: 62  AQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHL--YCKCGSVLEARKVFDEMRRKDMVS 119

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
           W ++I G++ +  P  AI     M+   F PN +TF  +LK+    +    G+QIHA  +
Sbjct: 120 WTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAV 179

Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ 217
           K     D +V ++L++MYA+ G ++ A  VF+K   ++ VS+ ALI+G+A +G  + A  
Sbjct: 180 KCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALM 239

Query: 218 LFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT----NA 273
            F EM      F     T  +V S+ A +G+LE G WV      H + S   +T    N 
Sbjct: 240 TFAEM--LRNGFEATHFTYSSVFSSIARLGALEQGKWV----HAHMIKSRQKMTAFAGNT 293

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           L+DMY+K G ++ AR +F+ ++ +D+++WN M+  +      KEA+  F +M +S I  N
Sbjct: 294 LLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLN 353

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
            VTFL +L AC++ G +  GK     + K +     +  + +++ +  + G +  A    
Sbjct: 354 QVTFLCILTACSHGGLVKEGKRYFEMM-KEYDLEPEIDHFVTVVALLGRAGLLNFALVFI 412

Query: 394 DGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
             M  + T A W A+++   MH  A K     +  + E L PDD
Sbjct: 413 FKMPIEPTAAVWGALLAACRMHKNA-KVGQFAADHVFE-LDPDD 454


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 255/749 (34%), Positives = 416/749 (55%), Gaps = 70/749 (9%)

Query: 22   DPP---------YKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEIC 72
            DPP         +  L +  SL    +C     + Q+H+ +  TGLH    A +KLIE  
Sbjct: 331  DPPGEASAEYACFFTLNSSRSLTSHKRCATSTTLTQLHAHLFITGLHRHPPASTKLIE-- 388

Query: 73   AVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVP-NTY 131
            + +  G    +  VF+T  +P+  +W  +I+ +        A+  Y  M+       + +
Sbjct: 389  SYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNF 448

Query: 132  TFPFILKSCA-------------------------------------------------- 141
             FP +LK+C+                                                  
Sbjct: 449  VFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLR 508

Query: 142  --KISAISEGKQIHAHVLKLGLESD-PFVHTSLINMYAQNGELESARLVFNKSSLRDAVS 198
              ++  + EG+ +H  V++  ++ +  F+  +L+ +YA  G L     VF     +  +S
Sbjct: 509  LGRLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILS 568

Query: 199  YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
            +  LI+ +   G  ++A  LF +M  + +  +P+  ++ + LSAC  +   +LG  +   
Sbjct: 569  WNTLISIFTRNGQPEEALLLFVQM--QTQGLMPDSYSLASSLSACGTISFSQLGAQIHGY 626

Query: 259  IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
            I   G   N  V NALIDMY+KCG +  A  +FE I+++ +++WN MI G++      EA
Sbjct: 627  IIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEA 685

Query: 319  LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
            + LF QM  + ++ + +TFLSV+ AC++LG L+ GKW+H  +     + ++  L T+L D
Sbjct: 686  ITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSY-LDTALTD 744

Query: 379  MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
            MY+KCG ++ A  VFD M  +++ SW+ MI+G  MHG+ +  +SLF++M+G G++P+DIT
Sbjct: 745  MYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDIT 804

Query: 439  FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
            F+ +LSAC+HAG ++ G+ YFN+M  ++ + PK  H+ CMVDLL RAG  + A  ++ ++
Sbjct: 805  FMHILSACSHAGAVEEGKLYFNSM-SEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSL 863

Query: 499  EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVA 558
                +++IW +LL  CR+H R+++ +S+ K+LL+++  + G Y LLSN+YA  G WD   
Sbjct: 864  PFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFG 923

Query: 559  TIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVP 618
             +R+ +  KG++KVPG S+IE+   ++ F  GD  H Q+K IY  L+   +L+    +  
Sbjct: 924  KVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDS 983

Query: 619  DTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLIS 678
            +    +    +  KE  +  HSEKLAIA+G+I+T+PGTT+RI KNLRVC +CHS  K+ S
Sbjct: 984  EPDNSIVGTSKFNKENNVVSHSEKLAIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIAS 1043

Query: 679  KIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            KI  REII RD NRFH F++G+CSCNDYW
Sbjct: 1044 KITGREIIMRDLNRFHCFRNGSCSCNDYW 1072


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  467 bits (1202), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 249/583 (42%), Positives = 368/583 (63%), Gaps = 18/583 (3%)

Query: 137 LKSCAKISAISEGKQIHAHVLKLG--LESDPFVHTSLINMYAQNG-----ELESARLVFN 189
           L  C  + A++   Q+HA  +K G  L++ P   T L+ +  + G      L  AR VF+
Sbjct: 35  LPHCTSLRALA---QLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFD 91

Query: 190 K-SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR--EENFVPNESTVVTVLSACAHM 246
           +     D V Y  L+ GYA  G      +    + +R  EE   P+  T V++L ACA  
Sbjct: 92  RIPHPGDVVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLLKACASA 151

Query: 247 GSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMI 306
            + E G     +    G   + +V   LI+MY++CGD+  AR +F+ ++   V+S+N MI
Sbjct: 152 RAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMI 211

Query: 307 GGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK 366
                +S   EAL+LFR+M    ++P  VT +SVL ACA LGAL+LG+WIH YI K   +
Sbjct: 212 TASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRK--MR 269

Query: 367 LNN-VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
           L++ V + T+LIDMYAKCG+++ A  VF  M  +   +W+ M+   A HG   +A+S+F 
Sbjct: 270 LDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFE 329

Query: 426 RMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485
            M  +G++PDD+TF+GVL AC+H+G++  G QYF++M ++Y I   ++HYGC+ DLL R+
Sbjct: 330 EMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM-REYGIVSGIKHYGCVTDLLARS 388

Query: 486 GLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545
           G  + A   +  + +KP A +W +LL AC  HG +++G+ V + +LEL+  + G YV+ S
Sbjct: 389 GQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFS 448

Query: 546 NMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLD 605
           N+ A  GRW+++  +R  +++KG+ KVPGCSSIE+ ++VHEF  GD  HP S+    M+D
Sbjct: 449 NLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVD 508

Query: 606 EIDALLEKSGFVPDTSEVLY-DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNL 664
           E+   L+  G+VP+TS V + +M EE K  +L +HSEKLAI++GL++T PGTT+RIVKNL
Sbjct: 509 EVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNL 568

Query: 665 RVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           RVC +CHS  KL+S +FNR II RD NRFHHF+DG CSC DYW
Sbjct: 569 RVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score =  229 bits (583), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 149/440 (33%), Positives = 236/440 (53%), Gaps = 20/440 (4%)

Query: 3   LPPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTG--LHN 60
           +  S LT +PS L    S +PP     + P LA L  CT+++ + Q+H+  +K G  L  
Sbjct: 1   MSSSPLTATPSPLLPAKSKNPPPHHHHHNPLLAYLPHCTSLRALAQLHAVAVKAGGGLQA 60

Query: 61  TQFALSKLIEIC----AVSPFGDLSYALLVFETIREPNQVIWNNII-----RGHSLSSSP 111
               +++L+ +C    A +P   L+YA  VF+ I  P  V+W N +     RG       
Sbjct: 61  HPAFVTRLLTLCTEQGAEAP-AHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGGGGGGA 119

Query: 112 VVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSL 171
             A + +VRM+  G  P+TYTF  +LK+CA   A  EG+Q H   +K G     +V  +L
Sbjct: 120 EEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTL 179

Query: 172 INMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVP 231
           INMYA+ G++ +AR++F++      VSY A+IT         +A  LF EM  + +   P
Sbjct: 180 INMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREM--QAKGLKP 237

Query: 232 NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLF 291
              T+++VLSACA +G+LELG W+   I    L S + V  ALIDMY+KCG L  A  +F
Sbjct: 238 TSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVF 297

Query: 292 ESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALD 351
           + +E RD  +W+VM+  Y +    +EA+ +F +M +  ++P+DVTFL VL AC++ G + 
Sbjct: 298 QDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVS 357

Query: 352 LGKWIHAYID--KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMI 408
            G     Y D  + +  ++ +  +  + D+ A+ G ++ A +  D +  K  A  W  ++
Sbjct: 358 EGL---QYFDSMREYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLL 414

Query: 409 SGLAMHGKADKALSLFSRMI 428
           S  A HG  D    +F R++
Sbjct: 415 SACAGHGDVDMGKRVFERIL 434



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 145/298 (48%), Gaps = 8/298 (2%)

Query: 34  LALLSKCTNM---QNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           ++LL  C +    +  +Q H   +K G    ++    LI + A    GD+  A ++F+ +
Sbjct: 142 VSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYA--ECGDVRAARVMFDRM 199

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
                V +N +I     SS P  A+  +  M   G  P + T   +L +CA + A+  G+
Sbjct: 200 DGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGR 259

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            IH ++ K+ L+S   V+T+LI+MYA+ G LE A  VF     RD  +++ ++  YA+ G
Sbjct: 260 WIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHG 319

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
           Y  +A  +F+EM  +++   P++ T + VL AC+H G +  G      +  +G+ S +  
Sbjct: 320 YGREAISMFEEM--KKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKH 377

Query: 271 TNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
              + D+ ++ G L +A    + +  K   I W  ++       D      +F ++L+
Sbjct: 378 YGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILE 435


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 260/684 (38%), Positives = 381/684 (55%), Gaps = 71/684 (10%)

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKISAIS--EGK 150
           + V+ N +I  ++ +S    A+  +  ++ SG + P+ Y+F  +L +   +  IS     
Sbjct: 120 DTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRHCA 179

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELES---ARLVFNKSSLRDAVSYTALITGYA 207
           Q+H  VLK G      V  +L+ +Y +    E+   AR V ++   +D +++T ++ GY 
Sbjct: 180 QLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYV 239

Query: 208 SRGYLDDARQLFDEMP------------------IREENF----------VP-NESTVVT 238
            RG +  AR +F+E+                   +  E F          VP +E T  +
Sbjct: 240 RRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTS 299

Query: 239 VLSACAHMGSLELGNWV----CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
           VLSACA++G    G  V      L       + L V NAL+  YSKCG++  AR +F+++
Sbjct: 300 VLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNM 359

Query: 295 EKRDVISWN-------------------------------VMIGGYTHTSDYKEALMLFR 323
             +DV+SWN                               VM+ GY H    ++AL LF 
Sbjct: 360 TLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFN 419

Query: 324 QMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383
           +M   N++P D T+   + AC  LGAL  GK +H +I +   + +N S   +LI MYA+C
Sbjct: 420 KMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSN-SAGNALITMYARC 478

Query: 384 GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
           G +K A  +F  M      SWNAMIS L  HG   +AL LF RM+ EG+ PD I+F+ VL
Sbjct: 479 GAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVL 538

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
           +ACNH+GL+D G +YF +M +D+ I P   HY  ++DLLGRAG   EA  L+KTM  +P 
Sbjct: 539 TACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPT 598

Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563
            +IW ++L  CR  G +ELG   A  L ++ P++ G Y+LLSN Y+ AG W D A +R  
Sbjct: 599 PSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKL 658

Query: 564 LNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEV 623
           + D+G+KK PGCS IE G+ VH FLVGD  HP++  +Y+ L+ + A + K G+VPDT  V
Sbjct: 659 MRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKMRKLGYVPDTKVV 718

Query: 624 LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNR 683
           L+DM+   KE  L  HSE+LA+ +GL++  PG T+ ++KNLR+C +CH+A   +SK   R
Sbjct: 719 LHDMEPHQKEHILFAHSERLAVGFGLLNLPPGATVTVLKNLRICDDCHAAIMFMSKAVGR 778

Query: 684 EIIARDRNRFHHFKDGNCSCNDYW 707
           EI+ RD  RFHHFKDG CSC +YW
Sbjct: 779 EIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 178/372 (47%), Gaps = 34/372 (9%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           GD+  A  VFE +     V+WN +I G+  S   V A + + RM+L     + +TF  +L
Sbjct: 242 GDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVL 301

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPF----VHTSLINMYAQNGELESARLVFNKSSL 193
            +CA +   + GK +H  +++L     P     V+ +L+  Y++ G +  AR +F+  +L
Sbjct: 302 SACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTL 361

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMP-----------------------------I 224
           +D VS+  +++GY     LD A ++F+EMP                             +
Sbjct: 362 KDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKM 421

Query: 225 REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
           R EN  P + T    ++AC  +G+L+ G  +   I   G   +    NALI MY++CG +
Sbjct: 422 RSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAV 481

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
            +A  +F  +   D +SWN MI         +EAL LF +M+   I P+ ++FL+VL AC
Sbjct: 482 KEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTAC 541

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS- 403
            + G +D G      + ++   +     +T LID+  + G I  A  +   M ++   S 
Sbjct: 542 NHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSI 601

Query: 404 WNAMISGLAMHG 415
           W A++SG    G
Sbjct: 602 WEAILSGCRTSG 613



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 180/427 (42%), Gaps = 77/427 (18%)

Query: 165 PFVHTSLINMYAQNGELESARLVFNK--SSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
           P   TSL+  YA    L +A   F+    + RD V + A+I+ YA   +   A  +F  +
Sbjct: 88  PVSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSL 147

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGNWV---CSLIEGHGLGSNLHVTNALIDMYS 279
            +   +  P++ +   +LSA  H+ ++ + +     CS+++  G G  L V NAL+ +Y 
Sbjct: 148 -LASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKS-GAGGALSVCNALVALYM 205

Query: 280 KCGDLVKARD---LFESIEKRDVISWNVM------------------------------- 305
           KC      RD   + + +  +D ++W  M                               
Sbjct: 206 KCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAM 265

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK--- 362
           I GY H+    EA  LFR+M+   +  ++ TF SVL ACA +G    GK +H  I +   
Sbjct: 266 ISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQP 325

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA---------------- 406
           N      + +  +L+  Y+KCGNI  A ++FD M  K + SWN                 
Sbjct: 326 NFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVE 385

Query: 407 ---------------MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
                          M+SG    G A+ AL LF++M  E ++P D T+ G ++AC   G 
Sbjct: 386 VFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGA 445

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           L  G+Q    ++Q             ++ +  R G   EA  +   M    D+  W +++
Sbjct: 446 LKHGKQLHGHIVQ-LGFEGSNSAGNALITMYARCGAVKEAHLMFLVMP-NIDSVSWNAMI 503

Query: 512 GACRVHG 518
            A   HG
Sbjct: 504 SALGQHG 510



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 142/303 (46%), Gaps = 10/303 (3%)

Query: 14  ILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICA 73
           I+   P+  P   L  N   +   SKC N+   +++   +    + +    LS  +E   
Sbjct: 320 IIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSC 379

Query: 74  VSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTF 133
                 L  A+ VFE +   N++ W  ++ G+        A+K + +M      P  YT+
Sbjct: 380 ------LDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTY 433

Query: 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL 193
              + +C ++ A+  GKQ+H H+++LG E       +LI MYA+ G ++ A L+F     
Sbjct: 434 AGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPN 493

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG- 252
            D+VS+ A+I+     G+  +A +LFD M    E   P+  + +TVL+AC H G ++ G 
Sbjct: 494 IDSVSWNAMISALGQHGHGREALELFDRM--VAEGIYPDRISFLTVLTACNHSGLVDEGF 551

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVIS-WNVMIGGYTH 311
            +  S+    G+         LID+  + G + +ARDL +++      S W  ++ G   
Sbjct: 552 RYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRT 611

Query: 312 TSD 314
           + D
Sbjct: 612 SGD 614


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 241/584 (41%), Positives = 360/584 (61%), Gaps = 10/584 (1%)

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
           G   ++ T+  ++K C    A+ EGK++H H+   G     F+   LINMY +   LE A
Sbjct: 280 GVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEA 339

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
           +++F+K   R+ VS+T +I+ Y++    D A +L   M    +  +PN  T  +VL AC 
Sbjct: 340 QVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFM--FRDGVMPNMFTFSSVLRACE 397

Query: 245 HMGSL-ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN 303
            +  L +L +W+  +    GL S++ V +ALID+YSK G+L++A  +F  +   D + WN
Sbjct: 398 RLYDLKQLHSWIMKV----GLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWN 453

Query: 304 VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363
            +I  +   SD  EAL L++ M +     +  T  SVL AC  L  L+LG+  H ++ K 
Sbjct: 454 SIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLKF 513

Query: 364 HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSL 423
            Q L    L  +L+DMY KCG+++ A+ +F+ M  K + SW+ MI+GLA +G + +AL+L
Sbjct: 514 DQDL---ILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNL 570

Query: 424 FSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLG 483
           F  M  +G +P+ IT +GVL AC+HAGL++ G  YF +M   Y I P  +HYGCM+DLLG
Sbjct: 571 FESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLG 630

Query: 484 RAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVL 543
           RA   D+   L+  M  +PD   W +LL ACR    ++L    AK +L+L+P++ GAYVL
Sbjct: 631 RAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYVL 690

Query: 544 LSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEM 603
           LSN+YA + RW+DVA +R  +  +G++K PGCS IEV   +H F++GDK HPQ   I   
Sbjct: 691 LSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKSHPQIDEINRQ 750

Query: 604 LDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKN 663
           L++    L  +G+VPDT+ VL D++ E +E +L +HSEKLAI +G++S     TIRI KN
Sbjct: 751 LNQFICRLAGAGYVPDTNFVLQDLEGEQREDSLRYHSEKLAIVFGIMSFPKEKTIRIWKN 810

Query: 664 LRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           L++CG+CH   KLI+++  R I+ RD  R+HHF+DG CSC DYW
Sbjct: 811 LKICGDCHKFAKLIAELEQRHIVIRDPIRYHHFQDGVCSCGDYW 854



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 166/307 (54%), Gaps = 9/307 (2%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K+VH  I   G H   F  + LI +     F  L  A ++F+ + E N V W  +I  +S
Sbjct: 305 KRVHRHIFSNGYHPKTFLTNILINMYV--KFNLLEEAQVLFDKMPERNVVSWTTMISAYS 362

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +     A++    M   G +PN +TF  +L++C ++  +   KQ+H+ ++K+GLESD F
Sbjct: 363 NAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDL---KQLHSWIMKVGLESDVF 419

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V ++LI++Y++ GEL  A  VF +    D+V + ++I  +A     D+A  L+  M  R 
Sbjct: 420 VRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSM--RR 477

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
             F  ++ST+ +VL AC  +  LELG    + +       +L + NAL+DMY KCG L  
Sbjct: 478 VGFPADQSTLTSVLRACTSLSLLELGRQ--AHVHVLKFDQDLILNNALLDMYCKCGSLED 535

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A+ +F  + K+DVISW+ MI G        EAL LF  M     +PN +T L VL AC++
Sbjct: 536 AKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSH 595

Query: 347 LGALDLG 353
            G ++ G
Sbjct: 596 AGLVNEG 602



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 107/369 (28%), Positives = 184/369 (49%), Gaps = 43/369 (11%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           ++L  C  + ++KQ+HS I+K GL +  F  S LI++   S  G+L  AL VF  +   +
Sbjct: 391 SVLRACERLYDLKQLHSWIMKVGLESDVFVRSALIDV--YSKMGELLEALKVFREMMTGD 448

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
            V+WN+II   +  S    A+  Y  M   GF  +  T   +L++C  +S +  G+Q H 
Sbjct: 449 SVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHV 508

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
           HVLK   + D  ++ +L++MY + G LE A+ +FN+ + +D +S++ +I G A  G+  +
Sbjct: 509 HVLK--FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSME 566

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVTNA 273
           A  LF+ M ++     PN  T++ VL AC+H G +  G  +  S+   +G+         
Sbjct: 567 ALNLFESMKVQGPK--PNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGC 624

Query: 274 LIDMY---SKCGDLVKARDLFESIEKRDVISWNVMIGGYT-------HTSDYKEALMLFR 323
           ++D+     K  D+VK   + E   + DV++W  ++            T   KE L L  
Sbjct: 625 MLDLLGRAEKLDDMVKL--IHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDP 682

Query: 324 Q-----MLQSNIEP-----NDVTFLSVL---------PACAYLGALDLGKWIHAYI--DK 362
           Q     +L SNI       NDV  +            P C++   +++ K IHA+I  DK
Sbjct: 683 QDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSW---IEVNKQIHAFILGDK 739

Query: 363 NHQKLNNVS 371
           +H +++ ++
Sbjct: 740 SHPQIDEIN 748



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 126/293 (43%), Gaps = 40/293 (13%)

Query: 309 YTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN--HQK 366
           + +  D   A+ +   M +  +  + +T+  ++  C   GA+  GK +H +I  N  H K
Sbjct: 260 HCYRRDLPSAMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPK 319

Query: 367 --LNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF 424
             L N+     LI+MY K   ++ A+ +FD M  + + SW  MIS  +     D+A+ L 
Sbjct: 320 TFLTNI-----LINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLL 374

Query: 425 SRMIGEGLQPDDITFVGVLSACN--------HAGLLDIGRQ----YFNAMIQDYKISPKL 472
           + M  +G+ P+  TF  VL AC         H+ ++ +G +      +A+I  Y    +L
Sbjct: 375 AFMFRDGVMPNMFTFSSVLRACERLYDLKQLHSWIMKVGLESDVFVRSALIDVYSKMGEL 434

Query: 473 QH---------------YGCMVDLLGRAGLFDEAEALLKTME---MKPDAAIWTSLLGAC 514
                            +  ++    +    DEA  L K+M       D +  TS+L AC
Sbjct: 435 LEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRAC 494

Query: 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
                LELG     H+L+ + +      LL +MY   G  +D   I  R+  K
Sbjct: 495 TSLSLLELGRQAHVHVLKFDQDLILNNALL-DMYCKCGSLEDAKFIFNRMAKK 546


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 259/682 (37%), Positives = 389/682 (57%), Gaps = 30/682 (4%)

Query: 49  VHSQIIKTGLHNTQF--ALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           VH +IIK GL  T    +L      C     G+L +A  +FE I   + V WN +I  + 
Sbjct: 247 VHGRIIKAGLEATNLWNSLVTFYGKC-----GNLQHASQLFERISRKDVVSWNAMIAANE 301

Query: 107 LSSSPVVAIKFYVRM--ILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESD 164
                  A+  + RM  +     PN  TF  +L + + +SA+  G++IHAH+ +L LE D
Sbjct: 302 QRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVD 361

Query: 165 PFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPI 224
             +  SLI  Y++  E+  AR +F +  LRD +S+ +++ GY           +F  M +
Sbjct: 362 TSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMML 421

Query: 225 REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL------GSNLHVTNALIDMY 278
                 P+  ++  + +A +   S  +       I G+ L      G +L V+NA++ MY
Sbjct: 422 --SGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMY 479

Query: 279 SKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
           +K   +  A  +F+ ++ RD  SWN M+ GY+  + +++ LM+F  +L+     + V+  
Sbjct: 480 AKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLS 539

Query: 339 SVLPACAYLGALDLGKWIHAYIDK--NHQKLNN----VSLWTSLIDMYAKCGNIKAAEQV 392
            +L +C  L +L LGK  HA + K  N Q   +    +S+  +LI MY+KCG+IK A QV
Sbjct: 540 ILLTSCGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQV 599

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F  M  K + SW AMI+G A HG A +AL LF RM  +G++P+ +TF+ +L AC H GL+
Sbjct: 600 FLKMERKDVFSWTAMITGCAHHGLAVEALQLFERMKTDGIKPNQVTFLALLMACAHGGLV 659

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK--TMEMKPD----AAI 506
             G  YF++M  DY +SP ++HY CM+DL GR+G FD A++L++      KP       +
Sbjct: 660 QEGSYYFDSMYNDYGLSPSIEHYACMIDLFGRSGQFDRAKSLVEFGITLFKPYHDDILNL 719

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
           W  LLGAC    +L+LG   A  +LELEPE+   Y+LL+N+YA +G W+D   +R  + D
Sbjct: 720 WKVLLGACHASKQLDLGVEAATKILELEPEDEATYILLANLYASSGLWEDAIKVRKAMRD 779

Query: 567 KGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYD 626
           KG++K  GCS I+ G+  H F+ GD  HPQ K IYE L +++    + G+VP T  VL+D
Sbjct: 780 KGLRKEVGCSWIDTGNRRHVFVAGDVYHPQRKEIYEKLAQLNYSCRRMGYVPMTELVLHD 839

Query: 627 MDEEWKEGALSHHSEKLAIAYGLISTKPGT-TIRIVKNLRVCGNCHSATKLISKIFNREI 685
           +DE  KE  L  HSEKLA+++GL++   G   IR++KNLRVC +CHS  K  S +  REI
Sbjct: 840 VDETEKEAILGCHSEKLAVSFGLLNCGVGNGVIRVMKNLRVCEDCHSWMKFASLLEKREI 899

Query: 686 IARDRNRFHHFKDGNCSCNDYW 707
           + RD  RFH F+DG+CSC DYW
Sbjct: 900 LLRDSQRFHLFRDGSCSCGDYW 921



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 160/632 (25%), Positives = 291/632 (46%), Gaps = 62/632 (9%)

Query: 23  PPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGL--HNTQFALSKLIEICAVSPF--- 77
           PP  LL   PS+      +N+ + + +HS +    L   N  F+   +    A S F   
Sbjct: 13  PPRPLL---PSIK-----SNVTSFRFLHSHLRNKQLEFQNHGFSSQFIFRCSACSKFLVS 64

Query: 78  ----GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTF 133
                 L  A  +F+     + + W+ +I  +S   +   A   + +M+  G  PN ++ 
Sbjct: 65  QSEHERLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSL 124

Query: 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL 193
             +LK       I   +Q+H   ++ G   D  +  + I MY++ G LE A+ VF+++SL
Sbjct: 125 ASLLKVSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSL 184

Query: 194 --RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL 251
              D + + ++I  Y   G   +  +LF +M +      P E T  +V++AC   G  + 
Sbjct: 185 LALDILLWNSIIAAYIFHGCWVEVLRLFCKM-VSVGVVAPTELTYASVVNACGSSGEEKY 243

Query: 252 GNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311
           G  V   I   GL +  ++ N+L+  Y KCG+L  A  LFE I ++DV+SWN MI     
Sbjct: 244 GAMVHGRIIKAGLEAT-NLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQ 302

Query: 312 TSDYKEALMLFRQMLQSN--IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNN 369
             + + AL LFR+ML+    ++PN VTFLS+L A + L AL  G+ IHA+I +   ++ +
Sbjct: 303 RGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEV-D 361

Query: 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG 429
            S+  SLI  Y+KC  +  A ++F+ +  + + SWN+M++G   + +  +   +F RM+ 
Sbjct: 362 TSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMML 421

Query: 430 EGLQPDDITFVGVLSACNH--AGLLDIGRQYFNAMIQDY---KISP---KLQHYGCMVDL 481
            G++PD  +   + +A +   +GL+   R      I  Y   +I+P    L     ++ +
Sbjct: 422 SGIEPDSHSLTIIFNAASRDSSGLIYFRR---GKEIHGYILRRITPGGVSLSVSNAILKM 478

Query: 482 LGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541
             +     +AE + K M+ + D+  W +++     + + E  + +   L  L+   P  +
Sbjct: 479 YAKFNRIADAEKIFKGMKNR-DSYSWNAMMDGYSRNAKFE--DVLMIFLDILKQGFPLDH 535

Query: 542 VLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF---LVGDKVHPQSK 598
           V LS +    GR                       S+++G   H     L   +  P   
Sbjct: 536 VSLSILLTSCGR---------------------LVSLQLGKQFHAVVAKLFNGQDCPHQD 574

Query: 599 HIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
            +  + + + ++  K G + D ++V   M+ +
Sbjct: 575 SLLSINNALISMYSKCGSIKDAAQVFLKMERK 606


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 256/600 (42%), Positives = 373/600 (62%), Gaps = 7/600 (1%)

Query: 114 AIKFYVRMILSGFVPNTYTFPFILKSCAKISA--ISEGKQIHAHVLKLGLESDPFVHTSL 171
           A+ F+ RM  SG  P+  TF  IL + A++ A  I +G++IH +    GL  +  V T++
Sbjct: 13  ALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTAV 72

Query: 172 INMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVP 231
           I+MY + G L+ AR  F +   +++V++ A++T Y   G   +A +LF EM  R  +  P
Sbjct: 73  ISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMCERSRSARP 132

Query: 232 NESTVVTVLSACAHMGSLELGNWVCSLI--EGHGLGSNLHVTNALIDMYSKCGDLVKARD 289
           ++ +    + AC+++  LE G  +  ++  EG  L  ++ V  AL++MYSKCGDL +AR 
Sbjct: 133 DKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARK 192

Query: 290 LFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS-NIEPNDVTFLSVLPACAYL 347
           +F+SI    D + WN MI  Y      K+AL L+R M  + ++ P   TF++V+  CA L
Sbjct: 193 VFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAEL 252

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
            AL  G+ IHA +   +   N + +  +L+ MY KCG +  A  VF  M  K   SWN +
Sbjct: 253 SALKQGRAIHARVRATNFDAN-LLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTI 311

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           IS  A HG +D+AL L+  M  +G++P ++TFVG+LSAC+H GL+  G  YF  M  D++
Sbjct: 312 ISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHR 371

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
           I P + H+GC++DLLGR G   EAE +LK+M ++ +A  W SLLGAC+ HG L+ G   A
Sbjct: 372 IKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAA 431

Query: 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF 587
             +++  P   G YVLLSN+YA AGRW DV  IR  +  +G+KK PG S IE+G VVHEF
Sbjct: 432 DQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEIGDVVHEF 491

Query: 588 LVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAY 647
           + GD+ HPQ + IY  L ++   ++  G+VPDTS V +D++EE KE  L  HSEKLAI Y
Sbjct: 492 VSGDRSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKEDLLVCHSEKLAIVY 551

Query: 648 GLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           G +     + +RIVKNLRVC +CH+ATK +S+I  R+I+ RD  RFH F++G+CSC DYW
Sbjct: 552 GNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFHLFENGSCSCRDYW 611



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 104/359 (28%), Positives = 187/359 (52%), Gaps = 11/359 (3%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI--LSGFVPNTYTFPF 135
           G L  A   FE ++  N V WN ++  + L      A++ +  M        P+ ++F  
Sbjct: 80  GRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMCERSRSARPDKFSFSI 139

Query: 136 ILKSCAKISAISEGKQIHAHVLKLG--LESDPFVHTSLINMYAQNGELESARLVFNKSSL 193
            +++C+ +  + +G++IH  + + G  L  D  V T+L+NMY++ G+LE AR VF+  S+
Sbjct: 140 AIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARKVFD--SI 197

Query: 194 R---DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250
           R   D+V + A+I  YA  G    A  L+  M     +  P + T VTV+  CA + +L+
Sbjct: 198 RHDADSVCWNAMIAAYAQHGRGKQALDLYRSMH-DTTDLAPKQGTFVTVIDVCAELSALK 256

Query: 251 LGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYT 310
            G  + + +      +NL V+NAL+ MY KCG L +A D+F S++ +D ISWN +I  Y 
Sbjct: 257 QGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYA 316

Query: 311 HTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNV 370
           +     +AL+L+++M    ++P +VTF+ +L AC++ G +  G      +  +H+   +V
Sbjct: 317 YHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSV 376

Query: 371 SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA-SWNAMISGLAMHGKADKALSLFSRMI 428
             +  +ID+  + G +  AE V   M  +  A  W +++     HG   + +    +++
Sbjct: 377 PHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVV 435



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 111/219 (50%), Gaps = 6/219 (2%)

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL--PACAYLGALDLGKWIHAYIDKN 363
           +  ++H   + EAL+ FR+M QS   P+ VTF  +L   A     A+D G+ IH Y  + 
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYA-RI 59

Query: 364 HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSL 423
              L NV + T++I MY KCG +  A   F+ + +K   +WNAM++   + G+  +AL L
Sbjct: 60  SGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALEL 119

Query: 424 FSRMI--GEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG-CMVD 480
           F  M       +PD  +F   + AC++   L+ GR+    + ++ K   K    G  +++
Sbjct: 120 FREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLN 179

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
           +  + G  +EA  +  ++    D+  W +++ A   HGR
Sbjct: 180 MYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGR 218


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 244/655 (37%), Positives = 383/655 (58%), Gaps = 36/655 (5%)

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMIL--SGFVPNTYTFPFILKSCAKI 143
           +F ++ + + V +N ++ G S + +   A   YV ++   +G  P+  T   ++   + +
Sbjct: 99  LFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASAL 158

Query: 144 SAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS----------- 192
              + G+Q+H  +L+LG  +  F  + L++MYA+ G +  AR VF++             
Sbjct: 159 GDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMI 218

Query: 193 --------------------LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPN 232
                                RD++++T ++TG    G   +A  +F  M  R E    +
Sbjct: 219 TGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRM--RAEGVGID 276

Query: 233 ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFE 292
           + T  ++L+AC  + +LE G  + + I       N+ V +AL+DMYSKC  +  A  +F 
Sbjct: 277 QYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFR 336

Query: 293 SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL 352
            +  +++ISW  MI GY      +EA+ +F +M +  I+P+D T  SV+ +CA L +L+ 
Sbjct: 337 RMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEE 396

Query: 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLA 412
           G   H     +  +   V++  +L+ +Y KCG+I+ A ++FD M +    SW A++ G A
Sbjct: 397 GAQFHCLALVSGLR-PYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYA 455

Query: 413 MHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL 472
             GKA + + LF +M+ +G++PD +TF+GVLSAC+ +GL+D GR YF++M QD+ I P  
Sbjct: 456 QFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLD 515

Query: 473 QHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
            HY CM+DL  R+G   +AE  +K M   PDA  W +LL ACR+ G +E+G+  A++LL+
Sbjct: 516 DHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLK 575

Query: 533 LEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDK 592
           L+P+NP +YVLL +M+A  G W+DVA +R  + D+ +KK PGCS I+  + VH F   D+
Sbjct: 576 LDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQ 635

Query: 593 VHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLIST 652
            HP S+ IYE L  +++ + + G+ PD S VL+D+ +  K   LSHHSEKLAIA+GLI  
Sbjct: 636 SHPFSRTIYEKLQWLNSKMVEEGYKPDVSSVLHDVADAEKVHMLSHHSEKLAIAFGLIFV 695

Query: 653 KPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            P   IRIVKNLRVC +CH+ATK ISKI  R+I+ RD  RFH F +G CSC D+W
Sbjct: 696 PPEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGDFW 750



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 152/546 (27%), Positives = 237/546 (43%), Gaps = 106/546 (19%)

Query: 152 IHAHVLK-LGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           +HA +L+ L   S  ++  +L+  YA +G L  AR VF+    R+ V+  +L++  A  G
Sbjct: 32  VHALILRTLPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAG 91

Query: 211 YLDDARQLFDEMPIR-------------------------------EENFVPNESTVVTV 239
            + D  +LF  +P R                               E    P+  T+  V
Sbjct: 92  LVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGV 151

Query: 240 LSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK------------------- 280
           +   + +G   LG  V   I   G G+     + L+DMY+K                   
Sbjct: 152 VMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNV 211

Query: 281 ------------CGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
                       C  + +AR LFE+IE+RD I+W  M+ G T      EAL +FR+M   
Sbjct: 212 VMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAE 271

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            +  +  TF S+L AC  L AL+ GK IHAYI +   + +NV + ++L+DMY+KC +++ 
Sbjct: 272 GVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYE-DNVFVGSALVDMYSKCRSVRL 330

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           AE VF  M +K + SW AMI G   +G  ++A+ +FS M  +G++PDD T   V+S+C +
Sbjct: 331 AEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCAN 390

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
              L+ G Q F+ +     + P +     +V L G+ G  ++A  L   M    D   WT
Sbjct: 391 LASLEEGAQ-FHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWT 448

Query: 509 SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATI-------R 561
           +L     V G  + G+  AK  ++          L   M +   + D V  I       R
Sbjct: 449 AL-----VMGYAQFGK--AKETID----------LFEKMLSKGVKPDGVTFIGVLSACSR 491

Query: 562 TRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTS 621
           + L DKG             S  H       + P   H   M+D    L  +SG++    
Sbjct: 492 SGLVDKGR------------SYFHSMQQDHDIVPLDDHYTCMID----LYSRSGWLKQAE 535

Query: 622 EVLYDM 627
           E +  M
Sbjct: 536 EFIKQM 541


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 248/659 (37%), Positives = 366/659 (55%), Gaps = 67/659 (10%)

Query: 115 IKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINM 174
           I+ +  M+  G VP++   P ++K+CA +SA+  GKQ+H   L  GL  D  V +SL++M
Sbjct: 59  IRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHM 118

Query: 175 YAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDE------------- 221
           Y Q   L+ AR VF+K      V+ +ALI+ +A +G + + ++LF +             
Sbjct: 119 YVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSW 178

Query: 222 --------------------MPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
                                 +  E   P+ ++V +VL A   +    +G  +   +  
Sbjct: 179 NGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIK 238

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV---------------------- 299
            GLG +  V +ALIDMY KC    +   +F  +++ DV                      
Sbjct: 239 QGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEV 298

Query: 300 -----------ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
                      +SW  MI   +      EAL LFR+M    ++PN VT   +LPAC  + 
Sbjct: 299 FKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIA 358

Query: 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI 408
           AL  GK  H +  +N    N+V + ++LIDMYAKCG + A+   FD M  + L SWN+++
Sbjct: 359 ALLHGKAAHCFSLRN-GIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLM 417

Query: 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
           +G AMHGK  +A+++F  M   G +PD ++F  VLSAC   GL + G  YF++M +++ +
Sbjct: 418 AGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGV 477

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
             +++HY CMV LLGR+G  +EA A++K M  +PD+ +W +LL +CRVH R++LGE  AK
Sbjct: 478 EARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAK 537

Query: 529 HLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFL 588
            + ELEP NPG Y+LLSN+YA    W +V  +R  +  +G+KK PG S IE+ + VH  L
Sbjct: 538 RVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLL 597

Query: 589 VGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYG 648
            GD  HPQ   I E L ++   ++KSG+VP T  VL D++E+ KE  L  HSEKLA+  G
Sbjct: 598 AGDSSHPQMPQIIEKLAKLTVEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLAVVLG 657

Query: 649 LISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           L++TKPG  ++++KNLR+C +CH+  K IS    REI  RD NRFH FK G CSC DYW
Sbjct: 658 LLNTKPGFPLQVIKNLRICRDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCGDYW 716


>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
          Length = 593

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 254/580 (43%), Positives = 356/580 (61%), Gaps = 24/580 (4%)

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDP--FVHTSLINMYAQNGELESARLVFNKSS 192
             L SC   + IS+ KQ+HA  ++      P  F   S I  ++   +L  A  VF++  
Sbjct: 31  LFLNSC---TCISQLKQLHAQTIRTTSSHHPNTFFLYSRILHFSSLHDLRYAFRVFHQIE 87

Query: 193 LRDAVSYTALITGYA-SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL 251
             ++  + ALI   A S      A  L+  M + + + + ++ T   VL ACA++ +L  
Sbjct: 88  NPNSFMWNALIRACARSTDRKQHAIALYHRM-LEQGSVMQDKHTFPFVLKACAYLFALSE 146

Query: 252 GNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311
           G  + + I   G  S++++ N+L+  Y+ C  L  A+ +F+ + +R ++SWNV+I  +  
Sbjct: 147 GEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVR 206

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
             ++  AL LF +M Q   EP+  T  S+  ACA +G+L LG             +N+V 
Sbjct: 207 FGEFDAALNLFGEM-QKFFEPDGYTIQSIANACAGMGSLSLGI------------VNDVL 253

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMI-GE 430
           L TSL+DMY KCG+++ A Q+F  M  + + SWN+MI G + HG+   AL  F  M+  E
Sbjct: 254 LNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTE 313

Query: 431 GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
            L P+ ITFVGVLSACNH GL+  GR+YF+ M+ +YKI P+L+HYGC+VDLL RAGL DE
Sbjct: 314 KLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDE 373

Query: 491 AEALLKTMEMKPDAAIWTSLLGAC-RVHGRLELGESVAKHLLELEPE-NPGAYVLLSNMY 548
           A  ++  M M+PD  IW SLL AC + +  +EL E +A+ +LE E     G YVLLS +Y
Sbjct: 374 ALDVVSNMPMRPDLVIWRSLLDACCKQNAGVELSEEMARRVLEAEGGVCSGVYVLLSRVY 433

Query: 549 AGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEID 608
           A A RW+DV  +R  + DKG+ K PGCSSIE+  V HEF  GD  HPQ++ IY  LD I+
Sbjct: 434 ASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAGDTSHPQTEEIYSALDVIE 493

Query: 609 ALLEKSGFVPDTSEV-LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVC 667
             +E+ G+ PD+S+  + D   + K+ +L  HSE+LAIA+GL+ TKPG  IRI KNLRVC
Sbjct: 494 ERVERVGYSPDSSQAPMVDETIDGKQYSLRLHSERLAIAFGLLKTKPGMPIRIFKNLRVC 553

Query: 668 GNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            NCH  TKLIS++FNREII RDR RFHHFKDG CSC DYW
Sbjct: 554 NNCHQVTKLISRVFNREIIVRDRIRFHHFKDGACSCMDYW 593



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 140/414 (33%), Positives = 217/414 (52%), Gaps = 33/414 (7%)

Query: 4   PPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLH---N 60
           PPS         H P +         ++  L  L+ CT +  +KQ+H+Q I+T      N
Sbjct: 9   PPS---------HLPHAISNSDSFTHHRRLLLFLNSCTCISQLKQLHAQTIRTTSSHHPN 59

Query: 61  TQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVV-AIKFYV 119
           T F  S+++     S   DL YA  VF  I  PN  +WN +IR  + S+     AI  Y 
Sbjct: 60  TFFLYSRILHF---SSLHDLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYH 116

Query: 120 RMILSGFV-PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN 178
           RM+  G V  + +TFPF+LK+CA + A+SEG+QIHA +LKLG +SD +++ SL++ YA  
Sbjct: 117 RMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATC 176

Query: 179 GELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVT 238
             L+ A+ VF++ S R  VS+  +I  +   G  D A  LF EM   ++ F P+  T+ +
Sbjct: 177 DRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEM---QKFFEPDGYTIQS 233

Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD 298
           + +ACA MGSL L           G+ +++ +  +L+DMY KCG L  A  LF  + KRD
Sbjct: 234 IANACAGMGSLSL-----------GIVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRD 282

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQS-NIEPNDVTFLSVLPACAYLGALDLGKWIH 357
           V SWN MI G++   +   AL  F  M+++  + PN +TF+ VL AC + G +  G+   
Sbjct: 283 VTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYF 342

Query: 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISG 410
             +   ++    +  +  L+D+ A+ G I  A  V   M  +  L  W +++  
Sbjct: 343 DVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDA 396


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 264/697 (37%), Positives = 395/697 (56%), Gaps = 27/697 (3%)

Query: 23  PPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQ----FALSKLIEICAVSPFG 78
           PP   L N  +L L SKC ++ N +        T    TQ    F+ + LI   A +   
Sbjct: 41  PPSTYLSNHFTL-LYSKCGSLHNAQ--------TSFDLTQYPNVFSYNTLIN--AYAKHS 89

Query: 79  DLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILK 138
            +  A  VF+ I +P+ V +N +I  ++       A++ +  +    F  + +T   ++ 
Sbjct: 90  LIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSGVII 149

Query: 139 SCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK---SSLRD 195
           +C     +   +Q+H  V+  G +    V+ +++  Y++ G L  AR VF +      RD
Sbjct: 150 ACGDDVGLV--RQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRD 207

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
            VS+ A+I          +A +LF EM  R      +  T+ +VL+A   +  L  G   
Sbjct: 208 EVSWNAMIVACGQHREGLEAVELFREMVRR--GLKVDMFTMASVLTAFTCVKDLVGGMQF 265

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKC-GDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
             ++   G   N HV + LID+YSKC G +V+ R +FE I   D++ WN MI G++   D
Sbjct: 266 HGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYED 325

Query: 315 YKE-ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
             E  +  FR+M  +   P+D +F+ V  AC+ L +  +GK +HA   K+    N VS+ 
Sbjct: 326 LSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVN 385

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
            +L+ MY+KCGN+  A +VFD M    + S N+MI+G A HG   ++L LF  M+ + + 
Sbjct: 386 NALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIA 445

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
           P+ ITF+ VLSAC H G ++ G++YFN M + ++I P+ +HY CM+DLLGRAG   EAE 
Sbjct: 446 PNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAER 505

Query: 494 LLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGR 553
           +++TM   P +  W +LLGACR HG +EL    A   L+LEP N   YV+LSNMYA A R
Sbjct: 506 IIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAAR 565

Query: 554 WDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEK 613
           W++ AT++  + ++G+KK PGCS IE+   VH F+  D  HP  K I+  + EI   +++
Sbjct: 566 WEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGEILRKMKQ 625

Query: 614 SGFVPDTSEVLYDMDE---EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNC 670
           +G+VPD    L   +E   + KE  L +HSEKLA+A+GLIST+    I +VKNLR+CG+C
Sbjct: 626 AGYVPDIRWALVKDEEVEPDEKERRLLYHSEKLAVAFGLISTEEWVPILVVKNLRICGDC 685

Query: 671 HSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           H+A KLIS I  REI  RD +RFH FK+G+CSC DYW
Sbjct: 686 HNAIKLISAITGREITVRDTHRFHCFKEGHCSCGDYW 722



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 121/500 (24%), Positives = 208/500 (41%), Gaps = 75/500 (15%)

Query: 132 TFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKS 191
           TF  +LK+C     +  GK +HA   K  +    ++      +Y++ G L +A+  F+ +
Sbjct: 11  TFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLT 70

Query: 192 SLRDAVSYTALITGYASRGYLDDARQLFDEMP---------------------------- 223
              +  SY  LI  YA    +  ARQ+FDE+P                            
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFA 130

Query: 224 -IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
            +RE  F  +  T+  V+ AC     + L   +   +   G      V NA++  YS+ G
Sbjct: 131 EVRELRFGLDGFTLSGVIIACG--DDVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKG 188

Query: 283 DLVKARDLFESIEK---RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS 339
            L +AR +F  + +   RD +SWN MI       +  EA+ LFR+M++  ++ +  T  S
Sbjct: 189 FLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMAS 248

Query: 340 VLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC-GNIKAAEQVFDGMGY 398
           VL A   +  L  G   H  + K+     N  + + LID+Y+KC G +    +VF+ +  
Sbjct: 249 VLTAFTCVKDLVGGMQFHGMMIKSGFH-GNSHVGSGLIDLYSKCAGGMVECRKVFEEIAA 307

Query: 399 KTLASWNAMISGLAMHGK-ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
             L  WN MISG + +   ++  +  F  M   G  PDD +FV V SAC++     +G+Q
Sbjct: 308 PDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQ 367

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM------------------- 498
                I+      ++     +V +  + G   +A  +  TM                   
Sbjct: 368 VHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHG 427

Query: 499 ---------------EMKPDAAIWTSLLGACRVHGRLELGE---SVAKHLLELEPENPGA 540
                          ++ P+   + ++L AC   G++E G+   ++ K    +EPE    
Sbjct: 428 VEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAE-H 486

Query: 541 YVLLSNMYAGAGRWDDVATI 560
           Y  + ++   AG+  +   I
Sbjct: 487 YSCMIDLLGRAGKLKEAERI 506


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/576 (40%), Positives = 361/576 (62%), Gaps = 5/576 (0%)

Query: 132 TFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKS 191
           +  F + SC  +S  S    IHA V+K    SD F+   L++MY + G  E A+ +F++ 
Sbjct: 67  SLVFAISSCTSVSYCS---AIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEM 123

Query: 192 SLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL 251
             +D VS+ +L++G + RGYL      F  M   E    PNE T+++V+SACA MG+L+ 
Sbjct: 124 PNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRT-ESGRQPNEVTLLSVVSACADMGALDE 182

Query: 252 GNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311
           G  +  ++   G+     V N+LI+MY K G L  A  LFE +  R ++SWN M+  + H
Sbjct: 183 GKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNH 242

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
               ++ + LF  M ++ I P+  T +++L AC   G     + IHAYI +      ++ 
Sbjct: 243 NGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFN-ADII 301

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
           + T+L+++YAK G + A+E +F+ +  +   +W AM++G A+H    +A+ LF  M+ EG
Sbjct: 302 IATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEG 361

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
           ++ D +TF  +LSAC+H+GL++ G++YF  M + Y++ P+L HY CMVDLLGR+G  ++A
Sbjct: 362 VEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDA 421

Query: 492 EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA 551
             L+K+M M+P + +W +LLGACRV+G +ELG+ VA+ LL L+P +   Y++LSN+Y+ A
Sbjct: 422 YELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAA 481

Query: 552 GRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALL 611
           G W D + +R  + ++ + + PGCS IE G+ +H F+VGD++HP+S  I+  L+E+   +
Sbjct: 482 GLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKI 541

Query: 612 EKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCH 671
            ++G  P T  VL+D+DEE K   ++ HSEKLAIA+GL+ T  G  + I KNLR+CG+CH
Sbjct: 542 REAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCH 601

Query: 672 SATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           S  K  S +  R II RD  RFHHF DG CSC DYW
Sbjct: 602 STAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 637



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 215/420 (51%), Gaps = 15/420 (3%)

Query: 23  PPYKLLQNQPSLAL-LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLS 81
           PP+++     SL   +S CT++     +H+++IK+  ++  F   +L     VS +  L 
Sbjct: 57  PPFQVYSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRL-----VSMYFKLG 111

Query: 82  Y---ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRM-ILSGFVPNTYTFPFIL 137
           Y   A  +F+ +   + V WN+++ G S        +  + RM   SG  PN  T   ++
Sbjct: 112 YDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVV 171

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
            +CA + A+ EGK +H  V+KLG+     V  SLINMY + G L++A  +F +  +R  V
Sbjct: 172 SACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLV 231

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           S+ +++  +   GY +    LF+ M  +     P+++T+V +L AC   G       + +
Sbjct: 232 SWNSMVVIHNHNGYAEKGMDLFNLM--KRAGINPDQATMVALLRACTDTGLGRQAESIHA 289

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
            I   G  +++ +  AL+++Y+K G L  + D+FE I+ RD I+W  M+ GY   +  +E
Sbjct: 290 YIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGRE 349

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           A+ LF  M++  +E + VTF  +L AC++ G ++ GK     + + ++    +  ++ ++
Sbjct: 350 AIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMV 409

Query: 378 DMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           D+  + G ++ A ++   M  + +   W A++    ++G  +    +  +++   L P D
Sbjct: 410 DLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLL--SLDPSD 467


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/513 (46%), Positives = 326/513 (63%), Gaps = 3/513 (0%)

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
           D VS+ +LI G    G+ +DA   F +M  R  +   +E T+ +VL++ A M  ++    
Sbjct: 5   DEVSWNSLILGCVREGFEEDALSFFQKM--RSRDMKIDEYTLPSVLNSFASMKVMQNAIS 62

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           V  LI   G  +   V NALIDMY+K G L  A  +F  +  +DV+SW  ++ GY+H   
Sbjct: 63  VHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGS 122

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
           Y+EA+ LF +M  S + P+ +   SVL ACA L  +D G+ IHA + K+  + +++S+  
Sbjct: 123 YEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLE-SSLSVDN 181

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
           SL+ MYAKCG+I  A + FD M  + + SW A+I G A +G+   +L  + +MI  G +P
Sbjct: 182 SLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKP 241

Query: 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494
           D ITF+G+L AC+H GLL  GR YF AM + Y I P  +HY CM+DLLGR+G   EA+ L
Sbjct: 242 DYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGL 301

Query: 495 LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554
           L  M + PDA +W +LL ACRVH  LELGE  AK+L ELEP N   YV+LSNMY+ AG+W
Sbjct: 302 LNQMVVAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKW 361

Query: 555 DDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKS 614
           +D A IR  +  +G+ K PG S IE  S V  F+  D+ HP    IY  +DEI  L++++
Sbjct: 362 EDAARIRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEA 421

Query: 615 GFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSAT 674
           G+VPD S  L+D D+E KE  L++HSEKLA+A+GL++   G  IRI KNLRVCG+CH+A 
Sbjct: 422 GYVPDMSFALHDTDDEVKELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVCGDCHTAM 481

Query: 675 KLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           K  SK++ R II RD N FHHF +G CSC DYW
Sbjct: 482 KYTSKVYARHIILRDSNCFHHFTEGRCSCGDYW 514



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 101/322 (31%), Positives = 177/322 (54%), Gaps = 3/322 (0%)

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           ++V WN++I G         A+ F+ +M       + YT P +L S A +  +     +H
Sbjct: 5   DEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVH 64

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
             ++K G E+   V+ +LI+MYA+ G+L+ A +VF+K   +D VS+T+L+TGY+  G  +
Sbjct: 65  CLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYE 124

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           +A +LF +M I      P++  V +VLSACA +  ++ G  + + +   GL S+L V N+
Sbjct: 125 EAIKLFCKMRI--SGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNS 182

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           L+ MY+KCG +V A   F+++  RDVISW  +I GY      K +L  + QM+ +  +P+
Sbjct: 183 LVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPD 242

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
            +TF+ +L AC++ G L  G+     +DK +        +  +ID+  + G +  A+ + 
Sbjct: 243 YITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLL 302

Query: 394 DGMGYKTLA-SWNAMISGLAMH 414
           + M     A  W A+++   +H
Sbjct: 303 NQMVVAPDAVVWKALLAACRVH 324



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 140/268 (52%), Gaps = 6/268 (2%)

Query: 43  MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNII 102
           MQN   VH  IIKTG    +   + LI++ A    G L  A++VF  + + + V W +++
Sbjct: 57  MQNAISVHCLIIKTGFEAYKLVNNALIDMYAKQ--GKLDCAIMVFSKMVDKDVVSWTSLV 114

Query: 103 RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE 162
            G+S + S   AIK + +M +SG  P+      +L +CA+++ +  G+QIHA ++K GLE
Sbjct: 115 TGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLE 174

Query: 163 SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
           S   V  SL+ MYA+ G +  A   F+    RD +S+TALI GYA  G    + Q +D+M
Sbjct: 175 SSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQM 234

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGN-WVCSLIEGHGLGSNLHVTNALIDMYSKC 281
                   P+  T + +L AC+H G L  G  +  ++ + +G+         +ID+  + 
Sbjct: 235 IATGTK--PDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRS 292

Query: 282 GDLVKARDLF-ESIEKRDVISWNVMIGG 308
           G L +A+ L  + +   D + W  ++  
Sbjct: 293 GKLAEAKGLLNQMVVAPDAVVWKALLAA 320



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 113/230 (49%), Gaps = 11/230 (4%)

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
           +E  D +SWN +I G       ++AL  F++M   +++ ++ T  SVL + A +  +   
Sbjct: 1   MEFDDEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNA 60

Query: 354 KWIHAYIDKN----HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
             +H  I K     ++ +NN     +LIDMYAK G +  A  VF  M  K + SW ++++
Sbjct: 61  ISVHCLIIKTGFEAYKLVNN-----ALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVT 115

Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS 469
           G + +G  ++A+ LF +M   G+ PD I    VLSAC    ++D G+Q    +++   + 
Sbjct: 116 GYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKS-GLE 174

Query: 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
             L     +V +  + G   +A      M  + D   WT+L+     +GR
Sbjct: 175 SSLSVDNSLVTMYAKCGSIVDANRAFDNMPTR-DVISWTALIVGYAQNGR 223



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 103/205 (50%), Gaps = 11/205 (5%)

Query: 35  ALLSKC---TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ++LS C   T M   +Q+H+ ++K+GL ++    + L+ + A    G +  A   F+ + 
Sbjct: 147 SVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYA--KCGSIVDANRAFDNMP 204

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             + + W  +I G++ +     +++FY +MI +G  P+  TF  +L +C+    +  G+ 
Sbjct: 205 TRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRA 264

Query: 152 IHAHVLKL-GLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-DAVSYTALITGYASR 209
               + K+ G++  P  +  +I++  ++G+L  A+ + N+  +  DAV + AL+      
Sbjct: 265 YFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVH 324

Query: 210 GYLD----DARQLFDEMPIREENFV 230
             L+     A+ LF+  P+    +V
Sbjct: 325 KELELGEMAAKNLFELEPMNSMPYV 349


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 248/583 (42%), Positives = 368/583 (63%), Gaps = 18/583 (3%)

Query: 137 LKSCAKISAISEGKQIHAHVLKLG--LESDPFVHTSLINMYAQNG-----ELESARLVFN 189
           L  C  + A++   Q+HA  +K G  L++ P   T L+ +  + G      L  AR VF+
Sbjct: 35  LPHCTSLRALA---QLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFD 91

Query: 190 K-SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR--EENFVPNESTVVTVLSACAHM 246
           +     D + Y  L+ GYA  G      +    + +R  EE   P+  T V++L ACA  
Sbjct: 92  RIPHPGDVIWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLLKACASA 151

Query: 247 GSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMI 306
            + E G     +    G   + +V   LI+MY++CGD+  AR +F+ ++   V+S+N MI
Sbjct: 152 RAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMI 211

Query: 307 GGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK 366
                +S   EAL+LFR+M    ++P  VT +SVL ACA LGAL+LG+WIH YI K   +
Sbjct: 212 TASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRK--MR 269

Query: 367 LNN-VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
           L++ V + T+LIDMYAKCG+++ A  VF  M  +   +W+ M+   A HG   +A+S+F 
Sbjct: 270 LDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFE 329

Query: 426 RMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485
            M  +G++PDD+TF+GVL AC+H+G++  G QYF++M ++Y I   ++HYGC+ DLL R+
Sbjct: 330 EMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM-REYGIVSGIKHYGCVTDLLARS 388

Query: 486 GLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545
           G  + A   +  + +KP A +W +LL AC  HG +++G+ V + +LEL+  + G YV+ S
Sbjct: 389 GQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFS 448

Query: 546 NMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLD 605
           N+ A  GRW+++  +R  +++KG+ KVPGCSSIE+ ++VHEF  GD  HP S+    M+D
Sbjct: 449 NLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVD 508

Query: 606 EIDALLEKSGFVPDTSEVLY-DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNL 664
           E+   L+  G+VP+TS V + +M EE K  +L +HSEKLAI++GL++T PGTT+RIVKNL
Sbjct: 509 EVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNL 568

Query: 665 RVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           RVC +CHS  KL+S +FNR II RD NRFHHF+DG CSC DYW
Sbjct: 569 RVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 150/440 (34%), Positives = 236/440 (53%), Gaps = 20/440 (4%)

Query: 3   LPPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTG--LHN 60
           +  S LT +PS L    S +PP     + P LA L  CT+++ + Q+H+  +K G  L  
Sbjct: 1   MSSSPLTATPSPLLPAKSKNPPPHHHHHNPLLAYLPHCTSLRALAQLHAVAVKAGGGLQA 60

Query: 61  TQFALSKLIEIC----AVSPFGDLSYALLVFETIREPNQVIWNNII-----RGHSLSSSP 111
               +++L+ +C    A +P   L+YA  VF+ I  P  VIW N +     RG       
Sbjct: 61  HPAFVTRLLTLCTEQGAEAP-AHLAYARQVFDRIPHPGDVIWYNTLLRGYARGGGGGGGA 119

Query: 112 VVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSL 171
             A + +VRM+  G  P+TYTF  +LK+CA   A  EG+Q H   +K G     +V  +L
Sbjct: 120 EEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTL 179

Query: 172 INMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVP 231
           INMYA+ G++ +AR++F++      VSY A+IT         +A  LF EM  + +   P
Sbjct: 180 INMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREM--QAKGLKP 237

Query: 232 NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLF 291
              T+++VLSACA +G+LELG W+   I    L S + V  ALIDMY+KCG L  A  +F
Sbjct: 238 TSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVF 297

Query: 292 ESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALD 351
           + +E RD  +W+VM+  Y +    +EA+ +F +M +  ++P+DVTFL VL AC++ G + 
Sbjct: 298 QDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVS 357

Query: 352 LGKWIHAYID--KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMI 408
            G     Y D  + +  ++ +  +  + D+ A+ G ++ A +  D +  K  A  W  ++
Sbjct: 358 EGL---QYFDSMREYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLL 414

Query: 409 SGLAMHGKADKALSLFSRMI 428
           S  A HG  D    +F R++
Sbjct: 415 SACAGHGDVDMGKRVFERIL 434



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 145/298 (48%), Gaps = 8/298 (2%)

Query: 34  LALLSKCTNM---QNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           ++LL  C +    +  +Q H   +K G    ++    LI + A    GD+  A ++F+ +
Sbjct: 142 VSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYA--ECGDVRAARVMFDRM 199

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
                V +N +I     SS P  A+  +  M   G  P + T   +L +CA + A+  G+
Sbjct: 200 DGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGR 259

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            IH ++ K+ L+S   V+T+LI+MYA+ G LE A  VF     RD  +++ ++  YA+ G
Sbjct: 260 WIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHG 319

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
           Y  +A  +F+EM  +++   P++ T + VL AC+H G +  G      +  +G+ S +  
Sbjct: 320 YGREAISMFEEM--KKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKH 377

Query: 271 TNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
              + D+ ++ G L +A    + +  K   I W  ++       D      +F ++L+
Sbjct: 378 YGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILE 435


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 255/679 (37%), Positives = 397/679 (58%), Gaps = 18/679 (2%)

Query: 37  LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQV 96
           L+ C  ++  + +H  + ++GL  T    + L    A +  G L  A  VF+   E + V
Sbjct: 235 LTVCATIRQAQAIHFIVRESGLEQTLVVSTALAS--AYARLGHLYQAKEVFDRAAERDVV 292

Query: 97  IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHV 156
            WN ++  ++       A   + RM+  G  P+  T       C   S++  G+ IH   
Sbjct: 293 SWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGC---SSLRFGRMIHGCA 349

Query: 157 LKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDAR 216
           L+ GL+ D  +  +L++MY + G  E AR +F +    +AVS+  +I G + +G +  A 
Sbjct: 350 LEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIPC-NAVSWNTMIAGSSQKGQMKRAV 408

Query: 217 QLFDEMPIREENFVPNESTVVTVLSACA----HMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           +LF  M +  E   P  +T + +L A A       ++  G  + S I   G  S   +  
Sbjct: 409 ELFQRMQL--EGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGT 466

Query: 273 ALIDMYSKCGDLVKARDLFE--SIEKR-DVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           A++ MY+ CG + +A   F+  ++E R DV+SWN +I   +     K AL  FR+M    
Sbjct: 467 AVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHG 526

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           + PN +T ++VL ACA   AL  G+ +H ++  +  + +N+ + T+L  MY +CG++++A
Sbjct: 527 VAPNQITCVAVLDACAGAAALTEGEIVHDHLRHSGME-SNLFVATALASMYGRCGSLESA 585

Query: 390 EQVFDGMGY-KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
            ++F+ +   + +  +NAMI+  + +G A +AL LF RM  EG +PD+ +FV VLSAC+H
Sbjct: 586 REIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSH 645

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
            GL D G + F +M Q Y I+P   HY C VD+LGRAG   +AE L++ M++KP   +W 
Sbjct: 646 GGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWK 705

Query: 509 SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568
           +LLGACR +  ++ G      + EL+P +  AYV+LSN+ AGAG+WD+ A +RT +  +G
Sbjct: 706 TLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESRG 765

Query: 569 MKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
           ++K  G S IE+ S VHEF+ GD+ HP+S+ IY  L+ + A + + G+VPDT  VL  +D
Sbjct: 766 LRKEAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRLVLRKVD 825

Query: 629 EEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIAR 688
           E  KE  L  HSE+LAIA G++S+    T+R++KNLRVC +CH+ATK ISKI N+EI+ R
Sbjct: 826 EAEKERLLCQHSERLAIALGVMSSST-DTVRVMKNLRVCEDCHNATKFISKIVNKEIVVR 884

Query: 689 DRNRFHHFKDGNCSCNDYW 707
           D +RFHHF DG+CSC DYW
Sbjct: 885 DTHRFHHFVDGSCSCGDYW 903



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 140/481 (29%), Positives = 237/481 (49%), Gaps = 28/481 (5%)

Query: 47  KQVHSQIIKTGLHNT-QFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           +++H++I+  GL       L +L   C     GD+     VF  +   ++  W  II  +
Sbjct: 49  RRIHARIVSLGLEEELGNHLLRLYLKC--ESLGDVEE---VFSRLEVRDEASWTTIITAY 103

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
           +       AI  + RM   G   +  TF  +LK+CA++  +S+G+ IHA +++ GL+   
Sbjct: 104 TEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGKS 163

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
            +   L+++Y   G + SA L+F K   RD VS+ A I   A  G L  A +LF  M + 
Sbjct: 164 VLANLLLHIYGSCGCVASAMLLFEKME-RDLVSWNAAIAANAQSGDLGIALELFQRMQL- 221

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
            E   P   T+V  L+ CA   ++     +  ++   GL   L V+ AL   Y++ G L 
Sbjct: 222 -EGVRPARITLVIALTVCA---TIRQAQAIHFIVRESGLEQTLVVSTALASAYARLGHLY 277

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
           +A+++F+   +RDV+SWN M+G Y       EA +LF +ML   I P+ VT ++    C+
Sbjct: 278 QAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGCS 337

Query: 346 YLGALDLGKWIHA-YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
              +L  G+ IH   ++K   +  ++ L  +L+DMY +CG+ + A  +F  +    + SW
Sbjct: 338 ---SLRFGRMIHGCALEKGLDR--DIVLGNALLDMYTRCGSPEEARHLFKRIPCNAV-SW 391

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC----NHAGLLDIGRQYFN 460
           N MI+G +  G+  +A+ LF RM  EG+ P   T++ +L A       A  +  GR+  +
Sbjct: 392 NTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHS 451

Query: 461 AMIQ-DYKISPKLQHYGCMVDLLGRAGLFDEAEALLK--TMEMKPDAAIWTSLLGACRVH 517
            ++   Y   P +     +V +    G  DEA A  +   ME + D   W +++ +   H
Sbjct: 452 RIVSCGYASEPAIG--TAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQH 509

Query: 518 G 518
           G
Sbjct: 510 G 510



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 188/386 (48%), Gaps = 15/386 (3%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           +L++      +S+G++IHA ++ LGLE +   H  L+ +Y +   L     VF++  +RD
Sbjct: 35  LLRAAGDDRLLSQGRRIHARIVSLGLEEELGNH--LLRLYLKCESLGDVEEVFSRLEVRD 92

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
             S+T +IT Y   G    A  +F  M  ++E    +  T + VL ACA +G L  G  +
Sbjct: 93  EASWTTIITAYTEHGQAKRAIGMFHRM--QQEGVRCDAVTFLAVLKACARLGDLSQGRSI 150

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
            + I   GL     + N L+ +Y  CG +  A  LFE +E RD++SWN  I     + D 
Sbjct: 151 HAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKME-RDLVSWNAAIAANAQSGDL 209

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
             AL LF++M    + P  +T +  L  CA    +   + IH +I +       + + T+
Sbjct: 210 GIALELFQRMQLEGVRPARITLVIALTVCA---TIRQAQAIH-FIVRESGLEQTLVVSTA 265

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           L   YA+ G++  A++VFD    + + SWNAM+   A HG   +A  LF+RM+ EG+ P 
Sbjct: 266 LASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPS 325

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
            +T V   + C+    L  GR      ++   +   +     ++D+  R G  +EA  L 
Sbjct: 326 KVTLVNASTGCSS---LRFGRMIHGCALEK-GLDRDIVLGNALLDMYTRCGSPEEARHLF 381

Query: 496 KTMEMKPDAAIWTSLLGACRVHGRLE 521
           K   +  +A  W +++      G+++
Sbjct: 382 K--RIPCNAVSWNTMIAGSSQKGQMK 405


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/573 (40%), Positives = 360/573 (62%), Gaps = 5/573 (0%)

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
           F + SC  +S  S    IHA V+K    SD F+   L++MY + G  E A+ +F++   +
Sbjct: 127 FAISSCTSVSYCS---AIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNK 183

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
           D VS+ +L++G + RGYL      F  M   E    PNE T+++V+SACA MG+L+ G  
Sbjct: 184 DLVSWNSLMSGLSGRGYLGACLNAFCRMRT-ESGRQPNEVTLLSVVSACADMGALDEGKS 242

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           +  ++   G+     V N+LI+MY K G L  A  LFE +  R ++SWN M+  + H   
Sbjct: 243 LHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGY 302

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
            ++ + LF  M ++ I P+  T +++L AC   G     + IHAYI +     + + + T
Sbjct: 303 AEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNAD-IIIAT 361

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
           +L+++YAK G + A+E +F+ +  +   +W AM++G A+H    +A+ LF  M+ EG++ 
Sbjct: 362 ALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEV 421

Query: 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494
           D +TF  +LSAC+H+GL++ G++YF  M + Y++ P+L HY CMVDLLGR+G  ++A  L
Sbjct: 422 DHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYEL 481

Query: 495 LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554
           +K+M M+P + +W +LLGACRV+G +ELG+ VA+ LL L+P +   Y++LSN+Y+ AG W
Sbjct: 482 IKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLW 541

Query: 555 DDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKS 614
            D + +R  + ++ + + PGCS IE G+ +H F+VGD++HP+S  I+  L+E+   + ++
Sbjct: 542 RDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREA 601

Query: 615 GFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSAT 674
           G  P T  VL+D+DEE K   ++ HSEKLAIA+GL+ T  G  + I KNLR+CG+CHS  
Sbjct: 602 GCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTA 661

Query: 675 KLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           K  S +  R II RD  RFHHF DG CSC DYW
Sbjct: 662 KFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 694



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 208/405 (51%), Gaps = 14/405 (3%)

Query: 37  LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSY---ALLVFETIREP 93
           +S CT++     +H+++IK+  ++  F   +L     VS +  L Y   A  +F+ +   
Sbjct: 129 ISSCTSVSYCSAIHARVIKSLNYSDGFIGDRL-----VSMYFKLGYDEDAQRLFDEMPNK 183

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRM-ILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
           + V WN+++ G S        +  + RM   SG  PN  T   ++ +CA + A+ EGK +
Sbjct: 184 DLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSL 243

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H  V+KLG+     V  SLINMY + G L++A  +F +  +R  VS+ +++  +   GY 
Sbjct: 244 HGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYA 303

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           +    LF+ M  +     P+++T+V +L AC   G       + + I   G  +++ +  
Sbjct: 304 EKGMDLFNLM--KRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIAT 361

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           AL+++Y+K G L  + D+FE I+ RD I+W  M+ GY   +  +EA+ LF  M++  +E 
Sbjct: 362 ALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEV 421

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           + VTF  +L AC++ G ++ GK     + + ++    +  ++ ++D+  + G ++ A ++
Sbjct: 422 DHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYEL 481

Query: 393 FDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
              M  + +   W A++    ++G  +    +  +++   L P D
Sbjct: 482 IKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLL--SLDPSD 524



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 150/306 (49%), Gaps = 11/306 (3%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           L+++S C +M  +   K +H  ++K G+      ++ LI +      G L  A  +FE +
Sbjct: 225 LSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINM--YGKLGFLDAASQLFEEM 282

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
              + V WN+++  H+ +      +  +  M  +G  P+  T   +L++C       + +
Sbjct: 283 PVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAE 342

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            IHA++ + G  +D  + T+L+N+YA+ G L ++  +F +   RD +++TA++ GYA   
Sbjct: 343 SIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHA 402

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI-EGHGLGSNLH 269
              +A +LFD M   +E    +  T   +LSAC+H G +E G     ++ E + +   L 
Sbjct: 403 CGREAIKLFDLMV--KEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLD 460

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVIS-WNVMIGGYTHTSDYKEALMLFRQMLQS 328
             + ++D+  + G L  A +L +S+        W  ++G      + +    +  Q+L  
Sbjct: 461 HYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLL-- 518

Query: 329 NIEPND 334
           +++P+D
Sbjct: 519 SLDPSD 524


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 216/478 (45%), Positives = 324/478 (67%), Gaps = 1/478 (0%)

Query: 230 VPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARD 289
           +P+ ST   VL A A +    +G  +  ++   G   +++ + AL+ +Y  C  +  A  
Sbjct: 86  LPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQ 145

Query: 290 LFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA 349
           LF+ + +R+ ++WN +I GYTH   + +A+  FR ML    +P++ T + VL AC++LGA
Sbjct: 146 LFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGA 205

Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
            + GKWIH +I  N  +LN V + T+LIDMYAKCG +   E+VF+ +  K + +WN +IS
Sbjct: 206 FNQGKWIHEFIYHNRLRLN-VFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLIS 264

Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS 469
           G AM+G+ D AL  FSRM+ E  +PD++TF+GVL AC H GL+  GR  F +M Q + + 
Sbjct: 265 GYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQ 324

Query: 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKH 529
           P+++HYGCMVDLLGRAGL +EA  L+++M ++PD  IW +LL ACRVHG  +LGE + K 
Sbjct: 325 PRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKR 384

Query: 530 LLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLV 589
           L+ELEP N   YVLLSN+Y+   RW +V  +R  ++ +G++KVPGCSSIE+ +VV+EF+ 
Sbjct: 385 LIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRKVPGCSSIEINNVVYEFVA 444

Query: 590 GDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGL 649
            +   P+ + IY+ LD +   L+++G+V  T   LYD+++E KE ++ +HSEKLA+A+GL
Sbjct: 445 SNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKLALAFGL 504

Query: 650 ISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +++    T+RIVKNLR+C +CH   K++S ++ R I+ RDRNRFHHF +G CSC DYW
Sbjct: 505 LNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 179/350 (51%), Gaps = 27/350 (7%)

Query: 99  NNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLK 158
           N++IR +   +  + ++  +  M     +P++ TFP +LK+ A++     GK IH  V++
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 159 LGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGY-----------A 207
           +G   D +  T+L+++Y     +  A  +F++   R+AV++ ALITGY           A
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDA 177

Query: 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
            RG L D  Q             P+E TVV VLSAC+H+G+   G W+   I  + L  N
Sbjct: 178 FRGMLADGAQ-------------PSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLN 224

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
           + V  ALIDMY+KCG + +   +FE I +++V +WNV+I GY        AL  F +ML 
Sbjct: 225 VFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLM 284

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
            N +P++VTFL VL AC + G +  G+W    + +       +  +  ++D+  + G ++
Sbjct: 285 ENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLE 344

Query: 388 AAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
            A ++   M  +     W A++    +HG       +  R+I   L+P++
Sbjct: 345 EALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLI--ELEPNN 392



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 145/291 (49%), Gaps = 10/291 (3%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEI-CAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           K +H  +I+ G     +  + L+ + C      D S    +F+ + E N V WN +I G+
Sbjct: 109 KMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQ---LFDEMPERNAVTWNALITGY 165

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
           + +   V AI  +  M+  G  P+  T   +L +C+ + A ++GK IH  +    L  + 
Sbjct: 166 THNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNV 225

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           FV T+LI+MYA+ G +     VF +   ++  ++  LI+GYA  G  D A Q F  M + 
Sbjct: 226 FVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLM- 284

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNW-VCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
            ENF P+E T + VL AC H G +  G W   S+ +  GL   +     ++D+  + G L
Sbjct: 285 -ENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLL 343

Query: 285 VKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
            +A +L +S+  + D I W  ++       + K    + +++++  +EPN+
Sbjct: 344 EEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIE--LEPNN 392


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 241/590 (40%), Positives = 361/590 (61%), Gaps = 17/590 (2%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P   TF  ++ SCA+ +++S G  +H  ++  G + DPF+ T LINMY + G ++ A  V
Sbjct: 76  PTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKV 135

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNES---TVVTVLSACA 244
           F+++  R    + AL    A  G+  +   L+ +M     N++   S   T   VL AC 
Sbjct: 136 FDETRERTIYVWNALFRALAMVGHGKELLDLYIQM-----NWIGTPSDRFTYTYVLKACV 190

Query: 245 ----HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVI 300
                +  L  G  + + I  HG  +N+HV   L+D+Y+K G +  A  +F ++  ++ +
Sbjct: 191 VSELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFV 250

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQML--QSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
           SW+ MI  +       +AL LF+ M+    N  PN VT +++L ACA L AL+ GK IH 
Sbjct: 251 SWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHG 310

Query: 359 YIDKNHQKLNNV-SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA 417
           YI +  ++L+++  +  +LI MY +CG +   ++VFD M  + + SWN++IS   MHG  
Sbjct: 311 YILR--RQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFG 368

Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
            KA+ +F  MI +G+ P  I+F+ VL AC+HAGL++ G+  F +M+  Y+I P ++HY C
Sbjct: 369 KKAIQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYAC 428

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537
           MVDLLGRA    EA  L++ M  +P   +W SLLG+CR+H  +EL E  +  L ELEP N
Sbjct: 429 MVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTVLFELEPRN 488

Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQS 597
            G YVLL+++YA A  W +  ++   L  +G++K+PGCS IEV   V+ F+  D+ +PQ 
Sbjct: 489 AGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQI 548

Query: 598 KHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTT 657
           + I+ +L ++   ++  G+VP T+ VLYD+DEE KE  +  HSEKLA+A+GLI+T  G T
Sbjct: 549 EEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTAKGET 608

Query: 658 IRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           IRI KNLR+C +CH+ TK ISK  NREI+ RD NRFHHF+DG CSC DYW
Sbjct: 609 IRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFRDGVCSCGDYW 658



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 200/377 (53%), Gaps = 7/377 (1%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           VH  ++ +G     F  +KLI +      G +  AL VF+  RE    +WN + R  ++ 
Sbjct: 100 VHRCLVDSGFDQDPFLATKLINM--YYELGSIDRALKVFDETRERTIYVWNALFRALAMV 157

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCA----KISAISEGKQIHAHVLKLGLESD 164
                 +  Y++M   G   + +T+ ++LK+C      +  + +GK+IHAH+L+ G E++
Sbjct: 158 GHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEAN 217

Query: 165 PFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPI 224
             V T+L+++YA+ G +  A  VF     ++ VS++A+I  +A       A +LF  M  
Sbjct: 218 IHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMF 277

Query: 225 REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
              N VPN  T+V +L ACA + +LE G  +   I    L S L V NALI MY +CG++
Sbjct: 278 EACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDSILPVLNALITMYGRCGEV 337

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
           +  + +F++++KRDV+SWN +I  Y      K+A+ +F  M+   + P+ ++F++VL AC
Sbjct: 338 LMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGAC 397

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS- 403
           ++ G ++ GK +   +   ++    +  +  ++D+  +   +  A ++ + M ++   + 
Sbjct: 398 SHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTV 457

Query: 404 WNAMISGLAMHGKADKA 420
           W +++    +H   + A
Sbjct: 458 WGSLLGSCRIHCNVELA 474



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 145/279 (51%), Gaps = 8/279 (2%)

Query: 19  PSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFG 78
           PS    Y  +     ++ LS C  ++  K++H+ I++ G       ++ L+++ A   FG
Sbjct: 176 PSDRFTYTYVLKACVVSELSVCP-LRKGKEIHAHILRHGYEANIHVMTTLLDVYA--KFG 232

Query: 79  DLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGF--VPNTYTFPFI 136
            +SYA  VF  +   N V W+ +I   + +  P+ A++ +  M+      VPN+ T   +
Sbjct: 233 SVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNM 292

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L++CA ++A+ +GK IH ++L+  L+S   V  +LI MY + GE+   + VF+    RD 
Sbjct: 293 LQACAGLAALEQGKLIHGYILRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDV 352

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           VS+ +LI+ Y   G+   A Q+F+ M    +   P+  + +TVL AC+H G +E G  + 
Sbjct: 353 VSWNSLISIYGMHGFGKKAIQIFENMI--HQGVSPSYISFITVLGACSHAGLVEEGKILF 410

Query: 257 -SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
            S++  + +   +     ++D+  +   L +A  L E +
Sbjct: 411 ESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDM 449


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/569 (42%), Positives = 353/569 (62%), Gaps = 18/569 (3%)

Query: 145 AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
           +IS  ++IHA V K  L  D F+   L+  Y + G  E A  +F+    +D VS+ +LI+
Sbjct: 54  SISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLIS 113

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
           G++    L  +   F  M   E +  PNE T+++++SAC+  G+L+ G ++      HG 
Sbjct: 114 GFSR--CLHMSLTAFYTMKF-EMSVKPNEVTILSMISACS--GALDAGKYI------HGF 162

Query: 265 GSNL------HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
           G  +       V N+LI+MY K GDL  A  LFE+I   + +SWN +I         +E 
Sbjct: 163 GIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREG 222

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
           +  F +M +  IE ++ T L++L AC +LG   L + IH  +         +++ T+L+D
Sbjct: 223 IDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAK-ITIATALLD 281

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
            YAK G + A+  VF  +G+    +W AM++G A HG   +A+ LF  M  +GL+PD +T
Sbjct: 282 TYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVT 341

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
           F  +LSAC+H+GL++ G+ YFN M + Y I P++ HY CMVDLLGR GL ++A  +++ M
Sbjct: 342 FTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNM 401

Query: 499 EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVA 558
            M+P+A +W +LLGACRVHG +ELG+ VA+HL+ +EP +P  Y++LSNMY+ +  W D A
Sbjct: 402 PMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAA 461

Query: 559 TIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVP 618
            +R  L ++G+K+ PG SSIE G+  H F VGD+ HP+++ IY  L+E+   + K+G+  
Sbjct: 462 KVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSS 521

Query: 619 DTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLIS 678
            T  VL D++EE KE  ++ HSEKLAIA+GL+ +K G  + I KNLR+CG+CHS  KLIS
Sbjct: 522 KTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLIS 581

Query: 679 KIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            I  R II RD  RFHHF DG CSC DYW
Sbjct: 582 LIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 166/361 (45%), Gaps = 42/361 (11%)

Query: 34  LALLSKCTNMQNI-KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           L+++S C+   +  K +H   IK G        + LI +   S  GDL+ A  +FE I +
Sbjct: 143 LSMISACSGALDAGKYIHGFGIKVGGTLEVKVANSLINMYGKS--GDLTSACRLFEAIPD 200

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
           PN V WN+II     +      I ++ +M   G   +  T   +L++C  +      + I
Sbjct: 201 PNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESI 260

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H  +   G  +   + T+L++ YA+ G L ++  VF +    D V++TA++ GYA+ G  
Sbjct: 261 HGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLG 320

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVT 271
            +A +LF+ M    +   P+  T   +LSAC+H G +  G ++   + E +G+   +   
Sbjct: 321 REAIKLFESMA--NKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHY 378

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           + ++D+  +CG L  A ++ +++                                   +E
Sbjct: 379 SCMVDLLGRCGLLNDAYEVIQNMP----------------------------------ME 404

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           PN   + ++L AC   G ++LGK +  ++  N + L+  + +  L +MY+   + K A +
Sbjct: 405 PNAGVWGALLGACRVHGNIELGKEVAEHL-INMEPLDPRN-YIMLSNMYSASRSWKDAAK 462

Query: 392 V 392
           V
Sbjct: 463 V 463


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 249/581 (42%), Positives = 352/581 (60%), Gaps = 4/581 (0%)

Query: 129 NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF 188
           N   +  IL+SC    A+  G+Q+HA +L  GL  D  + T L+++YA  G +  AR +F
Sbjct: 62  NHNNYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLF 121

Query: 189 NKSSLRDAVS-YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
           ++   +  V  +  LI  YA  G  + A +L+ EM +   +  P+  T   VL ACA + 
Sbjct: 122 DEMPNQGNVFLWNVLIRAYARDGPREAAIELYREM-LACGSMEPDNFTYPPVLKACAALL 180

Query: 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG 307
            L  G  V   +      +++ V   LIDMY+KCG + +A  +F+S   RD + WN MI 
Sbjct: 181 DLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIA 240

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
                    EAL L R M    I P  VT +S + A A  GAL  G+ +H Y  +     
Sbjct: 241 ACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGS 300

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
            +  L TSL+DMYAK G +  A  +FD + ++ L SWNAMI G  MHG AD A  LF RM
Sbjct: 301 QD-KLKTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRM 359

Query: 428 IGEG-LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAG 486
             E  + PD ITFVGVLSACNH G++   ++ F+ M+  Y I P +QHY C+VD+LG +G
Sbjct: 360 RNEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHSG 419

Query: 487 LFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSN 546
            F EA  ++K M +KPD+ IW +LL  C++H  +EL E     L+ELEPE+ G YVLLSN
Sbjct: 420 RFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHKLIELEPEDAGNYVLLSN 479

Query: 547 MYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDE 606
           +YA +G+W++ A +R  + ++G+KK+  CS IE+    H FLVGD  HP+S  IYE L+ 
Sbjct: 480 IYAQSGKWEEAARVRKLMTNRGLKKIIACSWIELKGKSHGFLVGDASHPRSDEIYEELER 539

Query: 607 IDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRV 666
           ++ L+ ++G+VPDT+ V ++++++ K   +  HSE+LAIA+GLIST PGT + + KNLRV
Sbjct: 540 LEGLISQTGYVPDTTSVFHNVEDDEKRNMVRGHSERLAIAFGLISTPPGTKLLVTKNLRV 599

Query: 667 CGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           C +CH   KLIS+I  REII RD NR+HHF +G CSC D+W
Sbjct: 600 CEDCHVVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 640



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/396 (29%), Positives = 206/396 (52%), Gaps = 14/396 (3%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ---VIWNNIIR 103
           +Q+H++++ +GL       ++L+++ A    G +S A  +F+ +  PNQ    +WN +IR
Sbjct: 83  RQLHARLLVSGLGLDAVLATRLVDLYASC--GLVSVARRLFDEM--PNQGNVFLWNVLIR 138

Query: 104 GHSLSSSPVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE 162
            ++       AI+ Y  M+  G + P+ +T+P +LK+CA +  +  G+++H  V++    
Sbjct: 139 AYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGAGREVHDRVMRTSWA 198

Query: 163 SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
           +D FV   LI+MYA+ G ++ A  VF+ +++RDAV + ++I      G   +A  L   M
Sbjct: 199 ADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAEALALCRNM 258

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
               E   P   T+V+ +SA A  G+L  G  +       G GS   +  +L+DMY+K G
Sbjct: 259 A--AEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSG 316

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVL 341
            +  AR LF+ +  R++ISWN MI G+        A  LFR+M  ++ + P+ +TF+ VL
Sbjct: 317 WVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNEAQVMPDHITFVGVL 376

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
            AC + G +   K +   +   +     V  +T L+D+    G  K A  V  GM  K  
Sbjct: 377 SACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPD 436

Query: 402 AS-WNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           +  W A+++G  +H   + A     ++I   L+P+D
Sbjct: 437 SGIWGALLNGCKIHKNVELAELALHKLI--ELEPED 470


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 238/596 (39%), Positives = 362/596 (60%), Gaps = 9/596 (1%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L    KC    ++ Q  S +I +GL +  F LS L+     S   DL Y LL+F+ +  P
Sbjct: 12  LCCFHKCGTFDHLNQTTSILITSGLAHHTFFLSDLLR----SATKDLGYTLLLFDRLATP 67

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
              +WN I+R  S SS P + +  Y R+   G +P+ +TFP +LK+ +K+       Q +
Sbjct: 68  YIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN-ENPFQFY 126

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
           AH++K GL+ D FV  SL++ +A  G ++ +R +F +++ +D VS+TALI G    G   
Sbjct: 127 AHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAV 186

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL-IEGHGLGSNLHVTN 272
           +A + F EM  R      +E TVV+VL A A +  +  G WV    +E   +  +++V +
Sbjct: 187 EALECFVEM--RSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGS 244

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           AL+DMYSKCG    A  +F  +  R+++SW  +I GY   + YKEAL +F++M+   IEP
Sbjct: 245 ALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEP 304

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N  T  S L ACA LG+LD G+W+H Y+D++   LN+  L T+L+DMY+KCG +  A  V
Sbjct: 305 NQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNS-KLGTALVDMYSKCGCVDEALLV 363

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F+ +  K +  W AMI+GLAM G A  +L+LFS+MI   +QP+ +TF+GVLSAC H GL+
Sbjct: 364 FEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLV 423

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           D G + F  MI DY++ P + HYGCMVDLLGRAG  +EA   +++M M+P   +W +L  
Sbjct: 424 DEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFS 483

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
            C +H   ELGE +  HL++L+P + G Y+LL+N+Y+   +W+  A +R  +  KG+ K 
Sbjct: 484 GCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKS 543

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
           P CS IEV  V+HEF+  DK H +S ++Y ML  + A L+ + +  D++ + + +D
Sbjct: 544 PACSWIEVNGVIHEFIAFDKSHIESINVYMMLGSVTAQLKLATYALDSNLLTFTID 599


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/587 (40%), Positives = 362/587 (61%), Gaps = 4/587 (0%)

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           M L G     + +   + +C +  A+ EG+Q+HA ++        F+ T L+ MY + G 
Sbjct: 1   MALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGA 60

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
           L+ AR V ++   R  VS+T +I+GY+      +A  LF +M       +PNE T+ TVL
Sbjct: 61  LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKML--RAGCIPNEYTLATVL 118

Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVI 300
           ++C+   S+  G  V SL+      S++ V ++L+DMY+K  ++ +AR +F+++ +RDV+
Sbjct: 119 TSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVV 178

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           S   +I GY      +EAL LFRQ+    ++ N VTF +++ A + L +LD GK +HA I
Sbjct: 179 SCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALI 238

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
            +       V+L  SLIDMY+KCG +  + +VFD M  +++ SWNAM+ G   HG   + 
Sbjct: 239 LRKELPFF-VALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEV 297

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
           +SLF  +  E ++PD +T + VLS C+H GL+D G   F+ ++++        HYGC++D
Sbjct: 298 ISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIID 356

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540
           LLGR+G  ++A  L++ M  +   +IW SLLGACRVH  + +GE VA+ LLE+EPEN G 
Sbjct: 357 LLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGN 416

Query: 541 YVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHI 600
           YV+LSN+YA AG W DV  +R  + +K + K PG S I +  V+H F   ++ HP  K I
Sbjct: 417 YVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDI 476

Query: 601 YEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRI 660
              + EI   ++ +GFVPD S VL+D+D+E KE  L  HSEKLAI +GL++T PG TIR+
Sbjct: 477 NAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRV 536

Query: 661 VKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +KNLR+C +CH+  K +SK++ REI  RD+NRFH    GNC+C DYW
Sbjct: 537 MKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 583



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 207/370 (55%), Gaps = 6/370 (1%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +QVH+++I        F  ++L+ +      G L  A  V + + E + V W  +I G+S
Sbjct: 30  RQVHARMITARYRPAVFLGTRLVTMYVRC--GALDDARNVLDRMPERSVVSWTTMISGYS 87

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +   V A+  +++M+ +G +PN YT   +L SC+   +I +GKQ+H+ ++K   ES  F
Sbjct: 88  QTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMF 147

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V +SL++MYA++  ++ AR VF+    RD VS TA+I+GYA +G  ++A  LF ++    
Sbjct: 148 VGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQL--YS 205

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           E    N  T  T+++A + + SL+ G  V +LI    L   + + N+LIDMYSKCG L+ 
Sbjct: 206 EGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLY 265

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           +R +F+++ +R V+SWN M+ GY       E + LF+  L   ++P+ VT L+VL  C++
Sbjct: 266 SRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKD-LHKEVKPDSVTLLAVLSGCSH 324

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WN 405
            G +D G  I   + K    L +   +  +ID+  + G ++ A  + + M +++  S W 
Sbjct: 325 GGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWG 384

Query: 406 AMISGLAMHG 415
           +++    +H 
Sbjct: 385 SLLGACRVHA 394


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 245/666 (36%), Positives = 386/666 (57%), Gaps = 11/666 (1%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSL 107
           QVH+  +  G        + LI++       DL  A  VF+ + E N V W  ++ G+  
Sbjct: 25  QVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDL--ACSVFDRMLERNVVSWTALMCGYLQ 82

Query: 108 SSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFV 167
             +   ++     M  SG  PN +TF   LK+C  +  +  G QIH   +K G E    V
Sbjct: 83  EGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVV 142

Query: 168 HTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREE 227
             + I+MY++ G +  A  VFNK   R+ VS+ A+I G+   G    +  LF  M  + E
Sbjct: 143 GNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGE 202

Query: 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH--VTNALIDMYSKCGDLV 285
             VP+E T  + L AC  +G++  G  + + +   G   ++   + +A++D+Y+KCG L 
Sbjct: 203 --VPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLF 260

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
           +A+ +F+ IE++++ISW+ +I G+    +  EA+ LFRQ+ +S    +      ++   A
Sbjct: 261 EAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFA 320

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
            L  ++ GK +H YI K    L+ +S+  S+IDMY KCG  + AE++F  M  + + SW 
Sbjct: 321 DLALVEQGKQMHCYILKVPSGLD-ISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWT 379

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
            MI+G   HG  +KA+ LF+RM  +G++ D++ ++ +LSAC+H+GL+   ++YF+ +  +
Sbjct: 380 VMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNN 439

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
           +++ P ++HY CMVD+LGRAG   EA+ L++ M++KP+  IW +LL ACRVHG LE+G  
Sbjct: 440 HQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGRE 499

Query: 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVH 585
           V + L  ++ +NP  YV++SN+YA AG W +   +R  +  KG+KK  G S +E+   +H
Sbjct: 500 VGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQSWVEINKEIH 559

Query: 586 EFLVGDKVHPQSKHIYEMLDEIDALL-EKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLA 644
            F  GD  HP ++ I+EML E++  + E+ G+       L+D++EE KE  L  HSEKLA
Sbjct: 560 FFYGGDDTHPLTEKIHEMLKEMERRVKEEVGYAYGLRFALHDVEEESKEENLRVHSEKLA 619

Query: 645 IAYGLIS---TKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
           I   L+     K G  IR+ KNLRVCG+CH   K +SKI  +  + RD NRFH F+DG C
Sbjct: 620 IGLALVCDGMEKKGGVIRVFKNLRVCGDCHEFIKGLSKILKKVFVVRDANRFHRFEDGLC 679

Query: 702 SCNDYW 707
           SC DYW
Sbjct: 680 SCGDYW 685



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 126/398 (31%), Positives = 204/398 (51%), Gaps = 11/398 (2%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           +L++C+K     +G Q+HA  + +G   D  ++  LI+MY +   ++ A  VF++   R+
Sbjct: 10  LLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERN 69

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
            VS+TAL+ GY   G    +  L  EM        PNE T  T L AC  +G +E G  +
Sbjct: 70  VVSWTALMCGYLQEGNAKGSLALLCEMGY--SGVKPNEFTFSTSLKACGALGVVENGMQI 127

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
             +    G      V NA IDMYSKCG +  A  +F  +  R+++SWN MI G+TH  + 
Sbjct: 128 HGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNG 187

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH--QKLNNVSLW 373
           +++L+LF++M      P++ TF S L AC  LGA+  G  IHA +        + N+ + 
Sbjct: 188 RKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNI-IA 246

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
           ++++D+YAKCG +  A++VFD +  K L SW+A+I G A  G   +A+ LF ++      
Sbjct: 247 SAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSN 306

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
            D      ++       L++ G+Q  +  I        +     ++D+  + GL +EAE 
Sbjct: 307 VDGFVLSIMMGVFADLALVEQGKQ-MHCYILKVPSGLDISVANSIIDMYLKCGLTEEAER 365

Query: 494 LLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLL 531
           L   M+++ +   WT ++     HG   LGE  A HL 
Sbjct: 366 LFSEMQVR-NVVSWTVMITGYGKHG---LGEK-AIHLF 398


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 257/650 (39%), Positives = 354/650 (54%), Gaps = 72/650 (11%)

Query: 126 FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR 185
           F P+ +  P  LKSC    A    + +HA  +  GL  DPFV +SL++ Y + G   +AR
Sbjct: 16  FPPDPHLLPSALKSC---PAQPLARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAAR 72

Query: 186 LVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP---------------------- 223
            VF++   ++ V ++ALI GY++RG  + A  L ++M                       
Sbjct: 73  SVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSG 132

Query: 224 -----------IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
                      +  E F P+ + V   LSA   +  + +G  V   +   G   +  V  
Sbjct: 133 RALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVT 192

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM------- 325
           ALIDMY KCG   +   +F      DV S N ++ G +  +   EAL+LFR+        
Sbjct: 193 ALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVEL 252

Query: 326 ---------------------------LQS-NIEPNDVTFLSVLPACAYLGALDLGKWIH 357
                                      +QS  +EPN VT   VLPA A + AL  G+  H
Sbjct: 253 NVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAH 312

Query: 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA 417
            +  +    L++V + ++L+DMYAKCG  + A  +FD M  + + SWNAMI G AMHG A
Sbjct: 313 CFSLRK-GFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDA 371

Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
             A+ LF  M     +PD +TF  VL AC+ AGL + GR+YFN M Q + ISP+++HY C
Sbjct: 372 ANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYAC 431

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537
           MV LLGR+G  DEA  L+  M  +PD+ IW SLLG+CRV+G + L E  A+ L +LEP N
Sbjct: 432 MVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPGN 491

Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQS 597
            G YVLLSN+YA    WD V  +R  + + G+KK  GCS IE+ + VH  L GD  HP  
Sbjct: 492 AGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSHPMM 551

Query: 598 KHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTT 657
             I E L+++   + + GF P    VL+D++E+ K+  L+ HSEKLA+A GLIST+PGT 
Sbjct: 552 TAITEKLNQLTIEMNRLGFAPSRDFVLHDVEEQEKDNILAVHSEKLAVALGLISTRPGTP 611

Query: 658 IRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +R++KNLR+CG+CH A K IS    REI  RD NRFHHFKDG CSC DYW
Sbjct: 612 LRVIKNLRICGDCHEAMKFISSFEQREISVRDTNRFHHFKDGKCSCGDYW 661



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/383 (28%), Positives = 175/383 (45%), Gaps = 38/383 (9%)

Query: 71  ICAVSPFGDLSYALLVFETIR----EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGF 126
           I   S  GD   A  + E +R    EPN + WN ++ G + S   + A+   VRM   GF
Sbjct: 90  IAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAVTALVRMHSEGF 149

Query: 127 VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARL 186
            P+       L +   +  +S GKQ+H +V+K G   D  V T+LI+MY + G  +    
Sbjct: 150 FPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVR 209

Query: 187 VFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR--EENFV-------------- 230
           VF++SS  D  S  AL+ G +    + +A  LF E   R  E N V              
Sbjct: 210 VFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGR 269

Query: 231 -----------------PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
                            PN  T+  VL A A++ +L  G          G   +++V +A
Sbjct: 270 DLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSA 329

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           L+DMY+KCG    AR +F+++  R+V+SWN MIGGY    D   A+ LF  M +   +P+
Sbjct: 330 LVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPD 389

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
            VTF  VL AC+  G  + G+     + + H     +  +  ++ +  + G +  A  + 
Sbjct: 390 LVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLI 449

Query: 394 DGMGYKTLAS-WNAMISGLAMHG 415
           + M ++  +  W +++    ++G
Sbjct: 450 NEMPFEPDSCIWGSLLGSCRVYG 472



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 120/262 (45%), Gaps = 39/262 (14%)

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
           +R  +F P+   + + L +C    +  L   + +     GL  +  V ++L+  Y + G 
Sbjct: 11  LRHVSFPPDPHLLPSALKSCP---AQPLARALHAAAVVSGLAEDPFVASSLLHSYIRLGA 67

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSV--- 340
              AR +F+ + +++V+ W+ +I GY+   D + A  L  QM  + +EPN +T+  +   
Sbjct: 68  TGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSG 127

Query: 341 --------------------------------LPACAYLGALDLGKWIHAYIDKNHQKLN 368
                                           L A   +  + +GK +H Y+ K   +L 
Sbjct: 128 LNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRL- 186

Query: 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMI 428
           +  + T+LIDMY KCG      +VF    +  +AS NA+++GL+ + +  +AL LF   I
Sbjct: 187 DACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFI 246

Query: 429 GEGLQPDDITFVGVLSACNHAG 450
             G++ + +++  +++ C   G
Sbjct: 247 CRGVELNVVSWTSIVACCVQNG 268


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/573 (40%), Positives = 359/573 (62%), Gaps = 5/573 (0%)

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
           F + SC  +S  S    IHA V+K    SD F+   L++MY + G  E A+ +F++   R
Sbjct: 147 FAISSCTSVSYCS---AIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNR 203

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
           D VS+ +L++G + RGYL      F  M   E    PNE T+++V+SACA MG+L+ G  
Sbjct: 204 DLVSWNSLMSGLSGRGYLGACLNAFCRMRT-ESGRQPNEVTLLSVVSACAXMGALDEGKS 262

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           +  ++   G+     V N+LI+MY K G L  A  LFE +  R ++SWN M+  + H   
Sbjct: 263 LHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGY 322

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
            ++ + LF  M ++ I P+  T +++L AC   G     + IHAYI +      ++ + T
Sbjct: 323 AEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFN-ADIIIAT 381

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
           +L+++YAK G + A+E +F+ +  +   +W AM++G A+H    +A+ LF  M+ EG++ 
Sbjct: 382 ALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEV 441

Query: 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494
           D +TF  +LSAC+H+GL++ G++YF  M + Y++ P+L HY CMVDLLGR+G  ++A  L
Sbjct: 442 DHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYEL 501

Query: 495 LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554
           +K+M M+P + +W +LLGACRV+G +ELG+ VA+ LL L+P +   Y++LSN+Y+ AG W
Sbjct: 502 IKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLW 561

Query: 555 DDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKS 614
              + +R  + ++ + + PGCS IE G+ +H F+VGD++HP+S  I+  L+E+   + ++
Sbjct: 562 RXASKVRXLMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIXEA 621

Query: 615 GFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSAT 674
           G  P T  VL+D+DEE K   ++ HSEKLAIA+GL+ T  G  + I KNLR+CG+CHS  
Sbjct: 622 GCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTA 681

Query: 675 KLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           K  S +  R II RD  RFHHF DG CSC DYW
Sbjct: 682 KFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 714



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 208/405 (51%), Gaps = 14/405 (3%)

Query: 37  LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSY---ALLVFETIREP 93
           +S CT++     +H+++IK+  ++  F   +L     VS +  L Y   A  +F+ +   
Sbjct: 149 ISSCTSVSYCSAIHARVIKSLNYSDGFIGDRL-----VSMYFKLGYDEDAQRLFDEMPNR 203

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRM-ILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
           + V WN+++ G S        +  + RM   SG  PN  T   ++ +CA + A+ EGK +
Sbjct: 204 DLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSL 263

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H  V+KLG+     V  SLINMY + G L++A  +F +  +R  VS+ +++  +   GY 
Sbjct: 264 HGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYA 323

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           +    LF+ M  +     P+++T+V +L AC   G       + + I   G  +++ +  
Sbjct: 324 EKGMDLFNLM--KRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIAT 381

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           AL+++Y+K G L  + D+FE I+ RD I+W  M+ GY   +  +EA+ LF  M++  +E 
Sbjct: 382 ALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEV 441

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           + VTF  +L AC++ G ++ GK     + + ++    +  ++ ++D+  + G ++ A ++
Sbjct: 442 DHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYEL 501

Query: 393 FDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
              M  + +   W A++    ++G  +    +  +++   L P D
Sbjct: 502 IKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLL--SLDPSD 544



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 149/306 (48%), Gaps = 11/306 (3%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           L+++S C  M  +   K +H  ++K G+      ++ LI +      G L  A  +FE +
Sbjct: 245 LSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINM--YGKLGFLDAASQLFEEM 302

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
              + V WN+++  H+ +      +  +  M  +G  P+  T   +L++C       + +
Sbjct: 303 PVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAE 362

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            IHA++ + G  +D  + T+L+N+YA+ G L ++  +F +   RD +++TA++ GYA   
Sbjct: 363 SIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHA 422

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI-EGHGLGSNLH 269
              +A +LFD M   +E    +  T   +LSAC+H G +E G     ++ E + +   L 
Sbjct: 423 CGREAIKLFDLMV--KEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLD 480

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVIS-WNVMIGGYTHTSDYKEALMLFRQMLQS 328
             + ++D+  + G L  A +L +S+        W  ++G      + +    +  Q+L  
Sbjct: 481 HYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLL-- 538

Query: 329 NIEPND 334
           +++P+D
Sbjct: 539 SLDPSD 544


>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
 gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
          Length = 607

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/567 (44%), Positives = 360/567 (63%), Gaps = 14/567 (2%)

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           Q  A +LK GL ++P V T L    A         LV   + LR +V   A +     R 
Sbjct: 45  QSLAFLLKSGLHANPLVLTRLFASSAAAAPALLEPLV--AALLRPSVPIDAFLVNTLIRA 102

Query: 211 Y----LDDAR---QLFDEMPIREENFVPNESTVVTVLSACAHM-GSLELGNWVCSLIEGH 262
           +    L  AR     F  + +R    +PN+ T   +L ACA + G   +G    +     
Sbjct: 103 HAASPLPSARLRAAAFFPLMLRSA-VLPNKFTFPFLLKACAALPGFPGVGLQAHAAALKF 161

Query: 263 GLGSNLHVTNALIDMYSKCGD--LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALM 320
           G  ++ +V+N LI MYS  G   L  AR++F+ ++K  V++W+ MIGGY       +A+ 
Sbjct: 162 GFATDQYVSNTLIHMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGYVRGGLSSDAVG 221

Query: 321 LFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMY 380
           LFR+M  S + P++VT + VL A A LGAL+L +W+  ++++      +V+L  +LID  
Sbjct: 222 LFREMQASGVRPDEVTVIGVLAAAADLGALELARWVGRFVEREGIG-KSVTLCNALIDAL 280

Query: 381 AKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFV 440
           AKCG++  A  VF GM  +T+ SW ++I  LAM G+  +A+++F  M   G++PDD+ F+
Sbjct: 281 AKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGRGKEAVAVFEAMKTAGVRPDDVVFI 340

Query: 441 GVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEM 500
           GVL+AC+HAG++D G  YF++M  +Y I PK++HYGCMVD+ GRAG+ + A   + TM M
Sbjct: 341 GVLTACSHAGMVDEGYGYFDSMKMEYGIDPKIEHYGCMVDMFGRAGMVERAMEFIHTMPM 400

Query: 501 KPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATI 560
           KP+  IW +L+ ACR HGRLELGES+ ++LL   P +   YV+LSN+YA   RW + + I
Sbjct: 401 KPNPIIWRTLVAACRAHGRLELGESITRNLLNEYPAHEANYVMLSNVYALTQRWKEKSEI 460

Query: 561 RTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDT 620
           R  ++ +G+KKVPGCS +E+   VHEF+ GD+ HPQ K IY M++E+   L+  G +  T
Sbjct: 461 RREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQWKEIYMMVEEMARELKHVGHISAT 520

Query: 621 SEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKI 680
           SEVL D+DEE KEGAL  HSEKLAIA+ L+ T PGT +R+VKNLRVC +CH+A K IS +
Sbjct: 521 SEVLLDLDEEDKEGALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAIKCISLV 580

Query: 681 FNREIIARDRNRFHHFKDGNCSCNDYW 707
           +NREII RDR+RFH FK+G+CSCND+W
Sbjct: 581 YNREIIVRDRSRFHRFKNGSCSCNDFW 607



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 132/431 (30%), Positives = 217/431 (50%), Gaps = 21/431 (4%)

Query: 11  SPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIE 70
           +P+  H PPS+         Q  L LL + +    + Q  + ++K+GLH     L++L  
Sbjct: 13  APAWCH-PPSA----ARAAEQHCLHLLERSSAPAAVLQSLAFLLKSGLHANPLVLTRLFA 67

Query: 71  ICAVSPFGDLSYALLVFETIREP-NQVIWNNIIRGHSLSSSPVVAIK---FYVRMILSGF 126
             A +    L   +        P +  + N +IR H+ S  P   ++   F+  M+ S  
Sbjct: 68  SSAAAAPALLEPLVAALLRPSVPIDAFLVNTLIRAHAASPLPSARLRAAAFFPLMLRSAV 127

Query: 127 VPNTYTFPFILKSCAKISAI-SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE--LES 183
           +PN +TFPF+LK+CA +      G Q HA  LK G  +D +V  +LI+MY+  G   L  
Sbjct: 128 LPNKFTFPFLLKACAALPGFPGVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGEFLGD 187

Query: 184 ARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC 243
           AR VF++      V+++A+I GY   G   DA  LF EM  +     P+E TV+ VL+A 
Sbjct: 188 ARNVFDRMDKSSVVTWSAMIGGYVRGGLSSDAVGLFREM--QASGVRPDEVTVIGVLAAA 245

Query: 244 AHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN 303
           A +G+LEL  WV   +E  G+G ++ + NALID  +KCGD+  A  +F+ +E+R V+SW 
Sbjct: 246 ADLGALELARWVGRFVEREGIGKSVTLCNALIDALAKCGDVDGAVAVFQGMEERTVVSWT 305

Query: 304 VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363
            +I         KEA+ +F  M  + + P+DV F+ VL AC++ G +D G   + Y D  
Sbjct: 306 SVIDALAMEGRGKEAVAVFEAMKTAGVRPDDVVFIGVLTACSHAGMVDEG---YGYFDSM 362

Query: 364 HQKLN---NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADK 419
             +      +  +  ++DM+ + G ++ A +    M  K     W  +++    HG+ + 
Sbjct: 363 KMEYGIDPKIEHYGCMVDMFGRAGMVERAMEFIHTMPMKPNPIIWRTLVAACRAHGRLEL 422

Query: 420 ALSLFSRMIGE 430
             S+   ++ E
Sbjct: 423 GESITRNLLNE 433


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 255/692 (36%), Positives = 390/692 (56%), Gaps = 18/692 (2%)

Query: 23  PPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSY 82
           P    L N   L L SKC  +       +Q  +  +    F+ + LI   A      +++
Sbjct: 40  PSSTYLSNHFIL-LYSKCNLLTTAHHAFNQTHEPNV----FSFNALIAAYAKESLIHVAH 94

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
            L  F+ I +P+ V +N +I  ++     + A+  +  M   G V + +TF  ++ +C  
Sbjct: 95  HL--FDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVITACC- 151

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK--SSLRDAVSYT 200
            + +   +Q+H+     G +S   V  SL+  Y++NG LE A +VFN     +RD VS+ 
Sbjct: 152 -NHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWN 210

Query: 201 ALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE 260
           ++I  Y        A  L+ +M  R   F  +  T+ +VL+  + +  L  G    +   
Sbjct: 211 SMIVAYGQHKRGLKALALYRDMVHR--GFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAI 268

Query: 261 GHGLGSNLHVTNALIDMYSKCG-DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK-EA 318
             G   N HV + LIDMY+KCG  + ++R +FE I   D++ WN MI GY+   +   EA
Sbjct: 269 KTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEA 328

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
           L  FRQM ++   P+D +F+  + AC+ L +   GK  HA   K+    N +S+  +L+ 
Sbjct: 329 LECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVT 388

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
           MY+KCGN++ A ++F  M      + N++I+G A HG   ++L+LF +M+   + P  IT
Sbjct: 389 MYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSIT 448

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
            V +LSAC H G ++ G++YFN M   + I P+ +HY CM+DLLGRAG   EAE L+ TM
Sbjct: 449 LVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTM 508

Query: 499 EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVA 558
              P +A W +LLGACR +G +EL E  A   L+LEP N   Y++L++MY+ A +W++ A
Sbjct: 509 PFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAA 568

Query: 559 TIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVP 618
            IR  + D+G++K PGCS IE+   VH F+  D  HP+ K I+  LDE+   ++++G+VP
Sbjct: 569 RIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPRIKEIHMYLDEMFVKMKRAGYVP 628

Query: 619 DTSEVLYDMD---EEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATK 675
           D        D   E+ KE  L+HHSEKLA+A+GL+ TK G  + +VKNLR+CG+CH+A K
Sbjct: 629 DVRWAFVKDDETGEQEKEIMLAHHSEKLAVAFGLLFTKHGEPLLVVKNLRICGDCHNAIK 688

Query: 676 LISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            +S I  R+I  RD  RFH F+DG CSC DYW
Sbjct: 689 FMSAIARRKITVRDAYRFHCFEDGRCSCGDYW 720



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 131/485 (27%), Positives = 205/485 (42%), Gaps = 75/485 (15%)

Query: 123 LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELE 182
           ++ F     +F  ILKSC     +  GK +H   LK  + S  ++    I +Y++   L 
Sbjct: 1   MTQFSWTLQSFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLT 60

Query: 183 SARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP------------------- 223
           +A   FN++   +  S+ ALI  YA    +  A  LFD++P                   
Sbjct: 61  TAHHAFNQTHEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGD 120

Query: 224 ----------IREENFVPNESTVVTVLSACA-HMGSLELGNWVCSLIEGHGLGSNLHVTN 272
                     +RE   V +  T   V++AC  H+G   L   + SL    G  S + V N
Sbjct: 121 TLSALSLFGEMREMGLVMDGFTFSGVITACCNHVG---LIRQLHSLAFSSGFDSYVSVKN 177

Query: 273 ALIDMYSKCGDLVKARDLFESI--EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
           +L+  YSK G L +A  +F  +  E RD +SWN MI  Y       +AL L+R M+    
Sbjct: 178 SLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGF 237

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG-NIKAA 389
           E +  T  SVL   + +  L  G   HA   K      N  + + LIDMYAKCG  +  +
Sbjct: 238 EIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGFN-KNRHVGSGLIDMYAKCGAGMSES 296

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKAD-KALSLFSRMIGEGLQPDDITFVGVLSACNH 448
            +VF+ +    L  WN MISG + + +   +AL  F +M   G  PDD +FV  +SAC++
Sbjct: 297 RKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSN 356

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM---------- 498
                 G+Q+    ++    S ++     +V +  + G   +A  L + M          
Sbjct: 357 LSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNS 416

Query: 499 ------------------------EMKPDAAIWTSLLGACRVHGRLELGE---SVAKHLL 531
                                    + P +    S+L AC   GR+E G+   ++ K + 
Sbjct: 417 IIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIF 476

Query: 532 ELEPE 536
            +EPE
Sbjct: 477 GIEPE 481


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 241/608 (39%), Positives = 362/608 (59%), Gaps = 41/608 (6%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ-NGELES-ARLVFNKSSL 193
           +L  C  I+ +   KQ+HAH+ + GLE   FV   L+    + +  ++   RLVF +   
Sbjct: 45  VLHGCTHINQV---KQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEY 101

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
            +   +TALI GYA +G   ++  L++ M  R +   P   T   +L AC+    + LG 
Sbjct: 102 PNPFLWTALIRGYALQGPFMESVLLYNSM--RRQGIGPVSFTFTALLKACSAALDVNLGR 159

Query: 254 WV-CSLIEGHGLGSNLHVTNALIDMYSKCG------------------------------ 282
            V    I   G GS+L+V N LIDMY KCG                              
Sbjct: 160 QVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKV 219

Query: 283 -DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
            ++  A +LF+ +  +D+++W  M+ GY   +  +EAL +F +M  + ++ ++VT + V+
Sbjct: 220 GNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVI 279

Query: 342 PACAYLGALDLGKWIHAYIDKN-HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT 400
            ACA LGA     W+    +++     +NV + ++LIDMYAKCG+++ A +VF+ M  + 
Sbjct: 280 SACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERN 339

Query: 401 LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFN 460
           + S+++MI G AMHG A  A+ LF  M+   ++P+ +TF+GVL+AC+HAG+++ G+Q F 
Sbjct: 340 VYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFA 399

Query: 461 AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRL 520
            M + + ++P   HY CMVDLLGRAG  +EA  L+K M M P   +W +LLGACR+HG  
Sbjct: 400 MMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNP 459

Query: 521 ELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIE- 579
           ++ +  A HL ELEP   G Y+LLSN+YA AGRWDDV+ +R  +  KG+KK PGCS +E 
Sbjct: 460 DMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEG 519

Query: 580 VGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHH 639
              ++HEF  GD  HP+S+ I + L+++   L+  G+ P+ S V YD+ +E K+  L  H
Sbjct: 520 KKGIIHEFFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKKRLLMSH 579

Query: 640 SEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDG 699
           SEKLA+A+GL++T  G TIRIVKNLR+C +CHS     S+I  REI+ RD  RFHHF+DG
Sbjct: 580 SEKLALAFGLLTTNAGCTIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFHHFRDG 639

Query: 700 NCSCNDYW 707
            CSC ++W
Sbjct: 640 RCSCGNFW 647



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 142/468 (30%), Positives = 243/468 (51%), Gaps = 36/468 (7%)

Query: 3   LPPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQ 62
           LP +S     +    P S     K+L+++  +++L  CT++  +KQVH+ I + GL    
Sbjct: 13  LPKTSYCQLQTQSFIPFSVRQEQKILESR-LVSVLHGCTHINQVKQVHAHIFRKGLEQCC 71

Query: 63  FALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI 122
           F L+KL+            Y  LVF+ +  PN  +W  +IRG++L    + ++  Y  M 
Sbjct: 72  FVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMR 131

Query: 123 LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKL-GLESDPFVHTSLINMYAQNGEL 181
             G  P ++TF  +LK+C+    ++ G+Q+H   + + G  SD +V  +LI+MY + G L
Sbjct: 132 RQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCL 191

Query: 182 ESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE------------ENF 229
                VF++   RD +S+T+LI  YA  G ++ A +LFD +P+++            +N 
Sbjct: 192 GCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNA 251

Query: 230 VPNES-----------------TVVTVLSACAHMGSLELGNWVCSLIEGHGLG--SNLHV 270
            P E+                 T+V V+SACA +G+ +  NWV  + E  G G  SN+ V
Sbjct: 252 RPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVV 311

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            +ALIDMY+KCG +  A  +FE +E+R+V S++ MI G+        A+ LF +ML++ I
Sbjct: 312 GSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEI 371

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           +PN VTF+ VL AC++ G ++ G+ + A +++ H    +   +  ++D+  + G ++ A 
Sbjct: 372 KPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEAL 431

Query: 391 QVFDGMGYKTLAS-WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI 437
            +   M        W A++    +HG  D A    S +    L+P+ I
Sbjct: 432 NLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLF--ELEPNGI 477


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 267/691 (38%), Positives = 389/691 (56%), Gaps = 17/691 (2%)

Query: 24  PYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNT---QFALSKLIEICAVSPFGDL 80
           P  LL +    A+LS+ + +   + VH+ I++T  H+T    F  + L+ +   S     
Sbjct: 6   PPNLLGSFLESAVLSRSSLLG--RAVHAHILRT--HDTPLPSFLCNHLVNM--YSKLDLP 59

Query: 81  SYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSC 140
           + A LV         V W ++I G   +     A+  +  M     +PN +TFP + K+ 
Sbjct: 60  NSAQLVLSLTNPRTVVTWTSLISGCVHNRRFTSALLHFSNMRRECVLPNDFTFPCVFKAS 119

Query: 141 AKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYT 200
           A +     GKQ+HA  LK G   D FV  S  +MY++ G    AR +F++   R+  ++ 
Sbjct: 120 ASLHMPVTGKQLHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWN 179

Query: 201 ALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE 260
           A ++     G   DA   F +    +    PN  T    L+ACA + SLELG  +   I 
Sbjct: 180 AYMSNAVQDGRCLDAIAAFKKFLCVDGE--PNAITFCAFLNACADIVSLELGRQLHGFIV 237

Query: 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE--KRDVISWNVMIGGYTHTSDYKEA 318
                 ++ V N LID Y KCGD+V +  +F  I   +R+V+SW  ++       + + A
Sbjct: 238 RSRYREDVSVFNGLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERA 297

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
            M+F Q  +  +EP D    SVL ACA LG L+LG+ +HA   K   +  N+ + ++L+D
Sbjct: 298 CMVFLQA-RKEVEPTDFMISSVLSACAELGGLELGRSVHALALKACVE-ENIFVGSALVD 355

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE--GLQPDD 436
           +Y KCG+I+ AEQVF  M  + L +WNAMI G A  G  D ALSLF  M     G+    
Sbjct: 356 LYGKCGSIEYAEQVFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSY 415

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
           +T V VLSAC+ AG ++ G Q F +M   Y I P  +HY C+VDLLGR+GL D A   +K
Sbjct: 416 VTLVSVLSACSRAGAVERGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIK 475

Query: 497 TMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
            M + P  ++W +LLGAC++HG+ +LG+  A+ L EL+P++ G +V+ SNM A AGRW++
Sbjct: 476 RMPILPTISVWGALLGACKMHGKTKLGKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEE 535

Query: 557 VATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGF 616
              +R  + D G+KK  G S + V + VH F   D  H ++  I  ML ++   ++K+G+
Sbjct: 536 ATIVRKEMRDIGIKKNVGYSWVAVKNRVHVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGY 595

Query: 617 VPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKL 676
           VPD +  L+D++EE K   + +HSEK+A+A+GLI+   G  IRI KNLR+C +CHSA K 
Sbjct: 596 VPDANLSLFDLEEEEKASEVWYHSEKIALAFGLITLPRGVPIRITKNLRICIDCHSAIKF 655

Query: 677 ISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           ISKI  REII RD NRFH FKDG CSC DYW
Sbjct: 656 ISKIVGREIIVRDNNRFHRFKDGWCSCKDYW 686


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/569 (42%), Positives = 352/569 (61%), Gaps = 18/569 (3%)

Query: 145 AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
           +IS  ++IHA V K  L  D F+   L+  Y + G  E A  +F+    +D VS+ +LI+
Sbjct: 54  SISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLIS 113

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
           G++    L  +   F  M   E +  PNE T+++++SAC   G+L+ G ++      HG 
Sbjct: 114 GFSR--CLHMSLTAFYTMKF-EMSVKPNEVTILSMISACN--GALDAGKYI------HGF 162

Query: 265 GSNL------HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
           G  +       V N+LI+MY K GDL  A  LFE+I   + +SWN +I         +E 
Sbjct: 163 GIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREG 222

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
           +  F +M +  IE ++ T L++L AC +LG   L + IH  +         +++ T+L+D
Sbjct: 223 IDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAK-ITIATALLD 281

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
            YAK G + A+  VF  +G+    +W AM++G A HG   +A+ LF  M  +GL+PD +T
Sbjct: 282 TYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVT 341

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
           F  +LSAC+H+GL++ G+ YFN M + Y I P++ HY CMVDLLGR GL ++A  +++ M
Sbjct: 342 FTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNM 401

Query: 499 EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVA 558
            M+P+A +W +LLGACRVHG +ELG+ VA+HL+ +EP +P  Y++LSNMY+ +  W D A
Sbjct: 402 PMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAA 461

Query: 559 TIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVP 618
            +R  L ++G+K+ PG SSIE G+  H F VGD+ HP+++ IY  L+E+   + K+G+  
Sbjct: 462 KVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSS 521

Query: 619 DTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLIS 678
            T  VL D++EE KE  ++ HSEKLAIA+GL+ +K G  + I KNLR+CG+CHS  KLIS
Sbjct: 522 KTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLIS 581

Query: 679 KIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            I  R II RD  RFHHF DG CSC DYW
Sbjct: 582 LIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 165/361 (45%), Gaps = 42/361 (11%)

Query: 34  LALLSKCTNMQNI-KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           L+++S C    +  K +H   IK G        + LI +   S  GDL+ A  +FE I +
Sbjct: 143 LSMISACNGALDAGKYIHGFGIKVGGTLEVKVANSLINMYGKS--GDLTSACRLFEAIPD 200

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
           PN V WN+II     +      I ++ +M   G   +  T   +L++C  +      + I
Sbjct: 201 PNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESI 260

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H  +   G  +   + T+L++ YA+ G L ++  VF +    D V++TA++ GYA+ G  
Sbjct: 261 HGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLG 320

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVT 271
            +A +LF+ M    +   P+  T   +LSAC+H G +  G ++   + E +G+   +   
Sbjct: 321 REAIKLFESMA--NKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHY 378

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           + ++D+  +CG L  A ++ +++                                   +E
Sbjct: 379 SCMVDLLGRCGLLNDAYEVIQNMP----------------------------------ME 404

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           PN   + ++L AC   G ++LGK +  ++  N + L+  + +  L +MY+   + K A +
Sbjct: 405 PNAGVWGALLGACRVHGNIELGKEVAEHL-INMEPLDPRN-YIMLSNMYSASRSWKDAAK 462

Query: 392 V 392
           V
Sbjct: 463 V 463


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 242/576 (42%), Positives = 353/576 (61%), Gaps = 11/576 (1%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           ILK CAK   + +GK  HA +L +GL++D      LINMY++ G ++ AR VF++   R 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
            VS+  +I      G  ++A  L  +M  + E    +E T+ +VL ACA   +L      
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQM--QREGTPFSEFTISSVLCACAAKCALS----E 183

Query: 256 CSLIEGHGLGS----NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311
           C L+    + +    N+ V  AL+D+Y+KCG +  A  +FES+  R V++W+ M  GY  
Sbjct: 184 CQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQ 243

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
              Y++AL LFR+  ++ ++ +     SV+ ACA L A+  GK ++A + K+    +N+ 
Sbjct: 244 NEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKS-GFCSNIF 302

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
           + +SLIDMYAKCG I+ + +VF  +  + +  WNAMISGL+ H ++ + + LF +M   G
Sbjct: 303 VASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMG 362

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
           L P+D+TFV VLSAC H GL+  G++YF+ M +++ ++P + HY CMVD L RAG   EA
Sbjct: 363 LSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEA 422

Query: 492 EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA 551
             L+  +     A++W SLL +CR HG LEL E  AK L ++EP N G Y+LLSNMYA  
Sbjct: 423 YDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAAN 482

Query: 552 GRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALL 611
           G+WD+VA +R  L +  +KK  G S IE+   VH F+VG++ HP+   IY  L+E+   L
Sbjct: 483 GKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDEL 542

Query: 612 EKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCH 671
           +K G+  +T   L+ + E  K+  L HHSEKLA   GL+   P   IRI+KNLR+CG+CH
Sbjct: 543 QKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCH 602

Query: 672 SATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           S  KL SK F R++I RD NRFHHFK+G CSC D+W
Sbjct: 603 SFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 198/378 (52%), Gaps = 11/378 (2%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K  H+QI+  GL       + LI +   S  G + +A  VF+ +   + V WN +I   +
Sbjct: 84  KACHAQILLMGLKTDLLTSNILINM--YSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLT 141

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +     A+   ++M   G   + +T   +L +CA   A+SE + +HA  +K  ++ + F
Sbjct: 142 QNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVF 201

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD---EMP 223
           V T+L+++YA+ G ++ A  VF     R  V+++++  GY      + A  LF    E  
Sbjct: 202 VATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETG 261

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
           ++ + F+     + +V+ ACA + ++  G  V +L+   G  SN+ V ++LIDMY+KCG 
Sbjct: 262 LKHDQFL-----MSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGG 316

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           + ++  +F  +EKR+V+ WN MI G +  +   E ++LF +M Q  + PNDVTF+SVL A
Sbjct: 317 IEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSA 376

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
           C ++G +  G+     + K H    NV  ++ ++D  ++ G I  A  +   + +   AS
Sbjct: 377 CGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASAS 436

Query: 404 -WNAMISGLAMHGKADKA 420
            W ++++    HG  + A
Sbjct: 437 MWGSLLASCRTHGNLELA 454



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 169/345 (48%), Gaps = 13/345 (3%)

Query: 175 YAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNES 234
           Y + GE    + +F   SLR  V  T      +S   + +      E P  ++    + S
Sbjct: 16  YREKGE---GKRIFQFLSLR--VCTTQFFASLSSSSCIVEC-----EKPTTKDFNATHVS 65

Query: 235 TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
            V  +L  CA    L  G    + I   GL ++L  +N LI+MYSKCG +  AR +F+ +
Sbjct: 66  FVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEM 125

Query: 295 EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGK 354
             R ++SWN MIG  T   +  EAL L  QM +     ++ T  SVL ACA   AL   +
Sbjct: 126 PSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQ 185

Query: 355 WIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMH 414
            +HA+  K    L NV + T+L+D+YAKCG +K A  VF+ M  +++ +W++M +G   +
Sbjct: 186 LLHAFAIKAAMDL-NVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQN 244

Query: 415 GKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQH 474
              ++AL+LF +    GL+ D      V+ AC     +  G+Q  NA++        +  
Sbjct: 245 EMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQV-NALLSKSGFCSNIFV 303

Query: 475 YGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
              ++D+  + G  +E+  + + +E K +  +W +++     H R
Sbjct: 304 ASSLIDMYAKCGGIEESYKVFRDVE-KRNVVLWNAMISGLSRHAR 347



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 139/261 (53%), Gaps = 6/261 (2%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           A  +KC  +   + +H+  IK  +    F  + L+++ A    G +  A+ VFE++ + +
Sbjct: 174 ACAAKCA-LSECQLLHAFAIKAAMDLNVFVATALLDVYA--KCGLMKDAVCVFESMPDRS 230

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
            V W+++  G+  +     A+  + +   +G   + +    ++ +CA ++A+ EGKQ++A
Sbjct: 231 VVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNA 290

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
            + K G  S+ FV +SLI+MYA+ G +E +  VF     R+ V + A+I+G +      +
Sbjct: 291 LLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLE 350

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI-EGHGLGSNLHVTNA 273
              LF++M  ++    PN+ T V+VLSAC HMG ++ G     L+ + H L  N+   + 
Sbjct: 351 VMILFEKM--QQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSC 408

Query: 274 LIDMYSKCGDLVKARDLFESI 294
           ++D  S+ G + +A DL   +
Sbjct: 409 MVDTLSRAGQIFEAYDLISKL 429


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/479 (47%), Positives = 323/479 (67%), Gaps = 7/479 (1%)

Query: 232 NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLF 291
           ++ T+ T   AC  +  L+ G  + +     G  S+LHV + ++DMY KCGD+V A  +F
Sbjct: 29  DQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVF 88

Query: 292 ESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALD 351
             I   D ++W  MI G     +  +AL ++ +M QS + P++ TF +++ A + + AL+
Sbjct: 89  NYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALE 148

Query: 352 LGKWIHAYIDKNHQKLNNVS---LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI 408
            G+ +HA    N  KL+ VS   + TSL+DMYAKCGNI+ A ++F  M  + +A WNAM+
Sbjct: 149 QGRQLHA----NVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAML 204

Query: 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
            GLA HG A++A++LF  M   G++PD ++F+G+LSAC+HAGL     +Y ++M  DY I
Sbjct: 205 VGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGI 264

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
            P+++HY C+VD LGRAGL  EA+ +++TM  K  A+I  +LLGACR+ G +E G+ VA 
Sbjct: 265 EPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVEXGKRVAA 324

Query: 529 HLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFL 588
            L  LEP +  AYVLLSN+YA A RWDDV   R  +  K +KK PG S I+V +++H F+
Sbjct: 325 RLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFV 384

Query: 589 VGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYG 648
           V D+ HPQ+  IY+ ++E+   + + G+VPDT  VL D+++E KE +L +HSEKLAIAYG
Sbjct: 385 VDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYG 444

Query: 649 LISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           LIST   TTIR++KNLRVCG+CH+A K ISK+F REI+ RD NRFHHF+DG CSC DYW
Sbjct: 445 LISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 503



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 184/335 (54%), Gaps = 7/335 (2%)

Query: 104 GHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLES 163
           G+ + +    A++ +  +  SG   +  T     K+C  +  + +GKQIHAH +K G +S
Sbjct: 4   GYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDS 63

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
           D  V++ +++MY + G++ +A +VFN  S  D V++T++I+G    G  D A +++  M 
Sbjct: 64  DLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRM- 122

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
            R+   +P+E T  T++ A + + +LE G  + + +      S+  V  +L+DMY+KCG+
Sbjct: 123 -RQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGN 181

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           +  A  LF+ +  R++  WN M+ G     + +EA+ LF+ M    IEP+ V+F+ +L A
Sbjct: 182 IEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSA 241

Query: 344 CAYLG-ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           C++ G   +  +++H+ +  ++     +  ++ L+D   + G ++ A++V + M +K  A
Sbjct: 242 CSHAGLTSEAYEYLHS-MPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASA 300

Query: 403 SWN-AMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           S N A++    + G  +    + +R+    L+P D
Sbjct: 301 SINRALLGACRIQGDVEXGKRVAARLF--ALEPFD 333



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 140/249 (56%), Gaps = 5/249 (2%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           KQ+H+  IK G  +     S ++++      GD+  A +VF  I  P+ V W ++I G  
Sbjct: 50  KQIHAHAIKAGFDSDLHVNSGILDM--YIKCGDMVNAGIVFNYISAPDDVAWTSMISGCV 107

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            + +   A++ Y RM  S  +P+ YTF  ++K+ + ++A+ +G+Q+HA+V+KL   SDPF
Sbjct: 108 DNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPF 167

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V TSL++MYA+ G +E A  +F K ++R+   + A++ G A  G  ++A  LF  M  + 
Sbjct: 168 VGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSM--KS 225

Query: 227 ENFVPNESTVVTVLSACAHMG-SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
               P+  + + +LSAC+H G + E   ++ S+   +G+   +   + L+D   + G + 
Sbjct: 226 HGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQ 285

Query: 286 KARDLFESI 294
           +A  + E++
Sbjct: 286 EADKVIETM 294



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 120/232 (51%), Gaps = 7/232 (3%)

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           M+ GY   +D K+AL LF  + +S  + + +T  +   AC  L  LD GK IHA+  K  
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG 60

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF 424
              +++ + + ++DMY KCG++  A  VF+ +      +W +MISG   +G  D+AL ++
Sbjct: 61  FD-SDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIY 119

Query: 425 SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484
            RM    + PD+ TF  ++ A +    L+ GRQ    +I+   +S        +VD+  +
Sbjct: 120 HRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTS-LVDMYAK 178

Query: 485 AGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE----LGESVAKHLLE 532
            G  ++A  L K M ++ + A+W ++L     HG  E    L +S+  H +E
Sbjct: 179 CGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIE 229


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 273/726 (37%), Positives = 392/726 (53%), Gaps = 78/726 (10%)

Query: 36  LLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEI---CAVSPFGDLSYALLVFET 89
           +   C  + N +    +H  +I+ G  +  F  + +I +   C         +  L +  
Sbjct: 132 VFKACGEISNFELGASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYRG 191

Query: 90  IREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILS-GFVPNTYTFPFILKSCAKISAISE 148
           I   + V WN+I+  +S    P VA+  +  M +  G +P+T     IL  C  +     
Sbjct: 192 I--CDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLC 249

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           G+Q+H   ++ GL  D FV  +L++MYA+ G++E A  VF +   +D V++ A++TGY+ 
Sbjct: 250 GRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQ 309

Query: 209 RGYLDDARQLFDEMPIREENF-----------------------------------VPNE 233
            G  +DA  LF +M  REE                                      PN 
Sbjct: 310 NGRFEDALSLFGKM--REEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNV 367

Query: 234 STVVTVLSACAHMGSLELGNWV-CSLI------EGHGLGSNLHVTNALIDMYSKCGDLVK 286
            T++++LSACA +G+L  G    C  +      E +    +L V NALIDMY+KC  L  
Sbjct: 368 VTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEV 427

Query: 287 ARDLFESI--EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN--IEPNDVTFLSVLP 342
           AR +F+ I  + RDV++W VMIGGY    D   AL LF +M + +  I PND T   VL 
Sbjct: 428 ARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLM 487

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS-LIDMYAKCGNIKAAEQVFDGMGYKTL 401
           ACA L AL  GK IHAY+ +  +  ++V    + LIDMY+K G++  A+ VFD M  +  
Sbjct: 488 ACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNA 547

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
            SW ++++G  MHG+++ A  +F  M  E L  D ITF+ VL AC+H+G+          
Sbjct: 548 VSWTSLLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACSHSGM---------- 597

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
              D+ + P ++HY CMVDLLGRAG   EA  L+  M ++P   +W +LL ACR+H   E
Sbjct: 598 ---DFGVDPGVEHYACMVDLLGRAGRLGEAMRLINDMPIEPTPVVWIALLSACRIHSNEE 654

Query: 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
           L E  AK LLEL+ +N G Y LLSN+YA A RW DVA I   +   G+KK+PG S ++  
Sbjct: 655 LAEFAAKKLLELKADNDGTYTLLSNIYANARRWKDVARIGYLMKRTGIKKIPGWSWVKGR 714

Query: 582 SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
             +  F VGD+ H QS+ IYE L ++   + K+ F       L+D+D+E K   LS HSE
Sbjct: 715 KGMETFYVGDRTHLQSQKIYETLADLIKRI-KANF------SLHDVDDEEKGDQLSEHSE 767

Query: 642 KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
           KLA+AY +++  PG  IRI KNLR+CG+ HSA   IS I   EII RD +RFH FK+G+C
Sbjct: 768 KLALAYAILTLPPGAPIRITKNLRICGDFHSAITYISMIVEHEIILRDSSRFHQFKNGSC 827

Query: 702 SCNDYW 707
           SC  YW
Sbjct: 828 SCKGYW 833



 Score =  258 bits (659), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 180/567 (31%), Positives = 282/567 (49%), Gaps = 63/567 (11%)

Query: 14  ILHFPP-SSDPP-----YKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTG-LHNTQFALS 66
           +L FP  +S PP     + LL    S     +C  +   K +H Q I  G L N+   ++
Sbjct: 2   LLRFPLFNSKPPLLINTHNLLLYHSSTISKQQCKTLTQAKLLHQQYIINGHLLNSYTNVT 61

Query: 67  KLIEICAVSPFGDLSYALLVFETIREPNQ---VIWNNIIRGHSLSSSPVVAIKFYVRMIL 123
            LI     S    ++ A+L+ E    P+      WN +IR     +SP  A++ + RM  
Sbjct: 62  NLIYTYISS--NSITNAILLLEKNVTPSHSSVYWWNQLIRHALHFNSPNTALRLFRRMKT 119

Query: 124 SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELES 183
             + P+ YTFPF+ K+C +IS    G  IH  V++LG ES+ FV  ++I+MY +   +  
Sbjct: 120 LHWTPDHYTFPFVFKACGEISNFELGASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVH 179

Query: 184 ARLVFNKSSLR---DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
           AR VF++   R   D+V++ ++++ Y+     + A  LF EM +     +P+   VV +L
Sbjct: 180 ARKVFDELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTV-GYGILPDTVGVVNIL 238

Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVI 300
             C ++G    G  V       GL  ++ V NAL+DMY+KCG +  A  +FE +  +DV+
Sbjct: 239 PVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVV 298

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIE----------------------------- 331
           +WN M+ GY+    +++AL LF +M +  IE                             
Sbjct: 299 TWNAMVTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQM 358

Query: 332 ------PNDVTFLSVLPACAYLGALDLGKWIHAYIDK------NHQKLNNVSLWTSLIDM 379
                 PN VT +S+L ACA +GAL  GK  H Y  K      ++   +++++  +LIDM
Sbjct: 359 CGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDM 418

Query: 380 YAKCGNIKAAEQVFDGMGYK--TLASWNAMISGLAMHGKADKALSLFSRM--IGEGLQPD 435
           YAKC +++ A  +FD +  K   + +W  MI G A HG A+ AL LFS M  I   + P+
Sbjct: 419 YAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPN 478

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI-SPKLQHYGCMVDLLGRAGLFDEAEAL 494
           D T   VL AC     L  G+Q    +++  +I S  L    C++D+  ++G  D A+ +
Sbjct: 479 DFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVV 538

Query: 495 LKTMEMKPDAAIWTSLLGACRVHGRLE 521
             +M  K +A  WTSLL    +HGR E
Sbjct: 539 FDSMS-KRNAVSWTSLLTGYGMHGRSE 564


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/528 (45%), Positives = 337/528 (63%), Gaps = 6/528 (1%)

Query: 184 ARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC 243
           AR  F++    + V  TA+ +GY     +  + +LF  M   +   V +E+  +   SA 
Sbjct: 3   ARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSAS 62

Query: 244 AHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG--DLVKARDLFESIEKRDVIS 301
           A +    +   + +LI   G   N  V N ++D Y+K G  DL  AR +F+++E RDV+S
Sbjct: 63  ARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVS 121

Query: 302 WNVMIGGYTHTSDYKEALMLFRQMLQ--SNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
           WN MI  Y       EA+ L+ +ML     I+ N V   +VL ACA+ GA+  GK IH  
Sbjct: 122 WNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQ 181

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADK 419
           + +   +  NV + TS++DMY+KCG ++ A + F  +  K + SW+AMI+G  MHG+  +
Sbjct: 182 VVRMGLE-ENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQE 240

Query: 420 ALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479
           AL +F+ M   GL+P+ ITF+ VL+AC+HAGLLD GR ++NAM Q++ I   ++HYGCMV
Sbjct: 241 ALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMV 300

Query: 480 DLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG 539
           DLLGRAG  DEA +L+K M++KPDAAIW +LL ACR+H  +EL E   K L EL+  N G
Sbjct: 301 DLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSG 360

Query: 540 AYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKH 599
            YVLLSN+YA AG W DV  IR  +  + ++K PG SS E+   ++ F VGDK HPQ   
Sbjct: 361 YYVLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIE 420

Query: 600 IYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIR 659
           IY  L+++   ++++G+VP+T  VL+D+DEE KE AL  HSEKLA+A+ L+++ P + I 
Sbjct: 421 IYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIH 480

Query: 660 IVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           I+KNLRVC +CH+A K I+KI  REII RD  RFHHFKDG CSC DYW
Sbjct: 481 IIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 528



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 138/262 (52%), Gaps = 7/262 (2%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           +H+ I K G       ++ +++  A     DL  A  VF+T+ E + V WN++I  ++ +
Sbjct: 74  LHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQN 132

Query: 109 SSPVVAIKFYVRM--ILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
                AI  Y +M  +  G   N      +L +CA   AI  GK IH  V+++GLE + +
Sbjct: 133 GMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQVVRMGLEENVY 192

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V TS+++MY++ G +E A   F K   ++ +S++A+ITGY   G   +A ++F EM  + 
Sbjct: 193 VGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEM--KR 250

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGN-WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
               PN  T ++VL+AC+H G L+ G  W  ++ +  G+ + +     ++D+  + G L 
Sbjct: 251 SGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLD 310

Query: 286 KARDLFESIE-KRDVISWNVMI 306
           +A  L + ++ K D   W  ++
Sbjct: 311 EAYSLIKEMKVKPDAAIWGALL 332



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 88/176 (50%), Gaps = 7/176 (3%)

Query: 35  ALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           A+L  C +   +Q  K +H+Q+++ GL    +  + ++++   S  G +  A   F  I+
Sbjct: 161 AVLLACAHAGAIQTGKHIHNQVVRMGLEENVYVGTSIVDM--YSKCGRVEMASRAFRKIK 218

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           E N + W+ +I G+ +      A++ +  M  SG  PN  TF  +L +C+    + EG+ 
Sbjct: 219 EKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRY 278

Query: 152 -IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-DAVSYTALITG 205
             +A   + G+E+    +  ++++  + G L+ A  +  +  ++ DA  + AL++ 
Sbjct: 279 WYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSA 334


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 270/774 (34%), Positives = 415/774 (53%), Gaps = 104/774 (13%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L L  + T++Q  + VH  II  G       L++LI++   S   +L+YA  +F+ I EP
Sbjct: 21  LCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSS--ELNYARQLFDEISEP 78

Query: 94  NQ---------------------------------VIWNNIIRGHSLSSSPVVAIKFYVR 120
           ++                                 V++N +I G S ++    AI  + +
Sbjct: 79  DKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCK 138

Query: 121 MILSGFVPNTYTFPFILKSCAKISAIS-EGKQIHAHVLKLGLESDPFVHTSLINMYAQNG 179
           M   GF P+ +TF  +L   A ++    +  Q HA  LK G      V  +L+++Y++  
Sbjct: 139 MKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCA 198

Query: 180 E----LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLF----DEMPIREENFVP 231
                L SAR VF++   +D  S+T ++TGY   GY D   +L     D M +   N + 
Sbjct: 199 SSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMI 258

Query: 232 --------------------------NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
                                     +E T  +V+ ACA  G L+LG  V + +      
Sbjct: 259 SGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDF 318

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
           S  H  N+L+ +Y KCG   +AR +FE +  +D++SWN ++ GY  +    EA ++F++M
Sbjct: 319 S-FHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEM 377

Query: 326 LQSNI-------------------------------EPNDVTFLSVLPACAYLGALDLGK 354
            + NI                               EP D  F   + +CA LGA   G+
Sbjct: 378 KEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQ 437

Query: 355 WIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMH 414
             HA + K     +++S   +LI MYAKCG ++ A QVF  M      SWNA+I+ L  H
Sbjct: 438 QYHAQLLKIGFD-SSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQH 496

Query: 415 GKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQH 474
           G   +A+ ++  M+ +G++PD IT + VL+AC+HAGL+D GR+YF++M   Y+I P   H
Sbjct: 497 GHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADH 556

Query: 475 YGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534
           Y  ++DLL R+G F +AE++++++  KP A IW +LL  CRVHG +ELG   A  L  L 
Sbjct: 557 YARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLI 616

Query: 535 PENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVH 594
           PE+ G Y+LLSNM+A  G+W++VA +R  + D+G+KK   CS IE+ + VH FLV D  H
Sbjct: 617 PEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSH 676

Query: 595 PQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW-KEGALSHHSEKLAIAYGLISTK 653
           P+++ +Y  L ++   + + G+VPDTS VL+D++ +  KE  L+ HSEK+A+A+GL+   
Sbjct: 677 PEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLP 736

Query: 654 PGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           PGTTIRI KNLR CG+CH+  + +S +  R+II RDR RFHHF++G CSC ++W
Sbjct: 737 PGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 166/681 (24%), Positives = 274/681 (40%), Gaps = 159/681 (23%)

Query: 127 VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARL 186
           + N Y     L    + +++   + +H +++  G +    +   LI++Y ++ EL  AR 
Sbjct: 11  IANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQ 70

Query: 187 VFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPI---------------------- 224
           +F++ S  D ++ T +++GY + G +  AR +F++ P+                      
Sbjct: 71  LFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGY 130

Query: 225 ---------REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH------GLGSNLH 269
                    + E F P+  T  +VL+  A +   E        ++ H      G G    
Sbjct: 131 SAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEK-----QCVQFHAAALKSGAGYITS 185

Query: 270 VTNALIDMYSKCGD----LVKARDLFESIEKRDVISW----------------------- 302
           V+NAL+ +YSKC      L  AR +F+ I ++D  SW                       
Sbjct: 186 VSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGM 245

Query: 303 ---------NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
                    N MI GY +   Y+EAL + R+M+ S IE ++ T+ SV+ ACA  G L LG
Sbjct: 246 DDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLG 305

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA------- 406
           K +HAY+ +      +     SL+ +Y KCG    A  +F+ M  K L SWNA       
Sbjct: 306 KQVHAYVLRRED--FSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVS 363

Query: 407 ------------------------MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
                                   MISGLA +G  ++ L LFS M  EG +P D  F G 
Sbjct: 364 SGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGA 423

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
           + +C   G    G+QY +A +        L     ++ +  + G+ +EA  + +TM    
Sbjct: 424 IKSCAVLGAYCNGQQY-HAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPC-L 481

Query: 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562
           D+  W +L+ A   HG       V + +L+ +   P    LL+ +          A    
Sbjct: 482 DSVSWNALIAALGQHGHGAEAVDVYEEMLK-KGIRPDRITLLTVL---------TACSHA 531

Query: 563 RLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSE 622
            L D+G K      ++             ++ P + H   ++D    LL +SG   D   
Sbjct: 532 GLVDQGRKYFDSMETVY------------RIPPGADHYARLID----LLCRSGKFSDAES 575

Query: 623 VLYDMD-----EEWK---EGALSHHSEKLAIA-----YGLISTKPGTTIRIVKNLRVCGN 669
           V+  +      E W+    G   H + +L I      +GLI    GT + +        N
Sbjct: 576 VIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLL-------SN 628

Query: 670 CHSATKLISKIFNREIIARDR 690
            H+AT    ++     + RDR
Sbjct: 629 MHAATGQWEEVARVRKLMRDR 649


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 270/714 (37%), Positives = 402/714 (56%), Gaps = 33/714 (4%)

Query: 10  LSPSILH--FPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQ----F 63
           ++  ILH  +  S  PP   L N  +L L SKC ++ N +        T  H TQ    F
Sbjct: 26  ITGKILHALYFKSLIPPSTYLSNHFTL-LYSKCGSLHNAQ--------TSFHLTQYPNVF 76

Query: 64  ALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS--LSSSPVVAIKFYVRM 121
           + + LI   A +    +  A  VF+ I +P+ V +N +I  ++      P + +   VR 
Sbjct: 77  SYNTLIN--AYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRE 134

Query: 122 ILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGEL 181
           +  G   + +T   ++ +C     +   +Q+H  V+  G +    V+ +++  Y++ G L
Sbjct: 135 LRLGL--DGFTLSGVITACGDDVGLV--RQLHCFVVVCGHDCYASVNNAVLACYSRKGFL 190

Query: 182 ESARLVFNK---SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVT 238
             AR VF +      RD VS+ A+I          +A  LF EM  R      +  T+ +
Sbjct: 191 SEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRR--GLKVDMFTMAS 248

Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC-GDLVKARDLFESIEKR 297
           VL+A   +  L  G     ++   G   N HV + LID+YSKC G +V+ R +FE I   
Sbjct: 249 VLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAP 308

Query: 298 DVISWNVMIGGYTHTSDYKE-ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
           D++ WN MI G++   D  E  L  FR+M ++   P+D +F+ V  AC+ L +  LGK +
Sbjct: 309 DLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQV 368

Query: 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGK 416
           HA   K+    N VS+  +L+ MY+KCGN+  A +VFD M      S N+MI+G A HG 
Sbjct: 369 HALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGV 428

Query: 417 ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG 476
             ++L LF  M+ + + P+ ITF+ VLSAC H G ++ G++YFN M + + I P+ +HY 
Sbjct: 429 EVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYS 488

Query: 477 CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536
           CM+DLLGRAG   EAE +++TM   P +  W +LLGACR HG +EL    A   L LEP 
Sbjct: 489 CMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPY 548

Query: 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQ 596
           N   YV+LSNMYA A RW++ AT++  + ++G+KK PGCS IE+   VH F+  D  HP 
Sbjct: 549 NAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPM 608

Query: 597 SKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE---EWKEGALSHHSEKLAIAYGLISTK 653
            K I+  + ++   ++++G+VPD    L   +E   + +E  L +HSEKLA+A+GLIST+
Sbjct: 609 IKEIHVYMGKMLKKMKQAGYVPDIRWALVKDEEVEPDERERRLLYHSEKLAVAFGLISTE 668

Query: 654 PGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            G  I +VKNLR+CG+CH+A KLIS +  REI  RD +RFH FK+G+CSC DYW
Sbjct: 669 EGVPILVVKNLRICGDCHNAVKLISALTGREITVRDTHRFHCFKEGHCSCRDYW 722


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 242/576 (42%), Positives = 353/576 (61%), Gaps = 11/576 (1%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           ILK CAK   + +GK  HA +L +GL++D      LINMY++ G ++ AR VF++   R 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
            VS+  +I      G  ++A  L  +M  + E    +E T+ +VL ACA   +L      
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQM--QREGTPFSEFTISSVLCACAAKCALS----E 183

Query: 256 CSLIEGHGLGS----NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311
           C L+    + +    N+ V  AL+D+Y+KCG +  A  +FES+  R V++W+ M  GY  
Sbjct: 184 CQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQ 243

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
              Y++AL LFR+  ++ ++ +     SV+ ACA L A+  GK ++A + K+    +N+ 
Sbjct: 244 NEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKS-GFCSNIF 302

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
           + +SLIDMYAKCG I+ + +VF  +  + +  WNAMISGL+ H ++ + + LF +M   G
Sbjct: 303 VASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMG 362

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
           L P+D+TFV VLSAC H GL+  G++YF+ M +++ ++P + HY CMVD L RAG   EA
Sbjct: 363 LSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEA 422

Query: 492 EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA 551
             L+  +     A++W SLL +CR HG LEL E  AK L ++EP N G Y+LLSNMYA  
Sbjct: 423 YDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAAN 482

Query: 552 GRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALL 611
           G+WD+VA +R  L +  +KK  G S IE+   VH F+VG++ HP+   IY  L+E+   L
Sbjct: 483 GKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDEL 542

Query: 612 EKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCH 671
           +K G+  +T   L+ + E  K+  L HHSEKLA   GL+   P   IRI+KNLR+CG+CH
Sbjct: 543 QKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCH 602

Query: 672 SATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           S  KL SK F R++I RD NRFHHFK+G CSC D+W
Sbjct: 603 SFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 198/378 (52%), Gaps = 11/378 (2%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K  H+QI+  GL       + LI +   S  G + +A  VF+ +   + V WN +I   +
Sbjct: 84  KACHAQILLMGLKTDLLTSNILINM--YSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLT 141

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +     A+   ++M   G   + +T   +L +CA   A+SE + +HA  +K  ++ + F
Sbjct: 142 QNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVF 201

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD---EMP 223
           V T+L+++YA+ G ++ A  VF     R  V+++++  GY      + A  LF    E  
Sbjct: 202 VATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETG 261

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
           ++ + F+     + +V+ ACA + ++  G  + +L+   G  SN+ V ++LIDMY+KCG 
Sbjct: 262 LKHDQFL-----MSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGG 316

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           + ++  +F  +EKR+V+ WN MI G +  +   E ++LF +M Q  + PNDVTF+SVL A
Sbjct: 317 IEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSA 376

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
           C ++G +  G+     + K H    NV  ++ ++D  ++ G I  A  +   + +   AS
Sbjct: 377 CGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASAS 436

Query: 404 -WNAMISGLAMHGKADKA 420
            W ++++    HG  + A
Sbjct: 437 MWGSLLASCRTHGNLELA 454



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 153/299 (51%), Gaps = 3/299 (1%)

Query: 221 EMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK 280
           E P  ++    + S V  +L  CA    L  G    + I   GL ++L  +N LI+MYSK
Sbjct: 52  EKPTTKDFNATHVSFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSK 111

Query: 281 CGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSV 340
           CG +  AR +F+ +  R ++SWN MIG  T   +  EAL L  QM +     ++ T  SV
Sbjct: 112 CGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSV 171

Query: 341 LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT 400
           L ACA   AL   + +HA+  K    L NV + T+L+D+YAKCG +K A  VF+ M  ++
Sbjct: 172 LCACAAKCALSECQLLHAFAIKAAMDL-NVFVATALLDVYAKCGLMKDAVCVFESMPDRS 230

Query: 401 LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFN 460
           + +W++M +G   +   ++AL+LF +    GL+ D      V+ AC     +  G+Q  N
Sbjct: 231 VVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQ-MN 289

Query: 461 AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
           A++        +     ++D+  + G  +E+  + + +E K +  +W +++     H R
Sbjct: 290 ALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVE-KRNVVLWNAMISGLSRHAR 347



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 138/261 (52%), Gaps = 6/261 (2%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           A  +KC  +   + +H+  IK  +    F  + L+++ A    G +  A+ VFE++ + +
Sbjct: 174 ACAAKCA-LSECQLLHAFAIKAAMDLNVFVATALLDVYA--KCGLMKDAVCVFESMPDRS 230

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
            V W+++  G+  +     A+  + +   +G   + +    ++ +CA ++A+ EGKQ++A
Sbjct: 231 VVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNA 290

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
            + K G  S+ FV +SLI+MYA+ G +E +  VF     R+ V + A+I+G +      +
Sbjct: 291 LLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLE 350

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI-EGHGLGSNLHVTNA 273
              LF++M  ++    PN+ T V+VLSAC HMG +  G     L+ + H L  N+   + 
Sbjct: 351 VMILFEKM--QQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSC 408

Query: 274 LIDMYSKCGDLVKARDLFESI 294
           ++D  S+ G + +A DL   +
Sbjct: 409 MVDTLSRAGQIFEAYDLISKL 429


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/578 (39%), Positives = 363/578 (62%), Gaps = 5/578 (0%)

Query: 132 TFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKS 191
           T+  +LK CA   A+ EGK++H+ ++K G  SD  +   LI MY + G +  AR VF++ 
Sbjct: 26  TYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQI 85

Query: 192 SLR--DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL 249
             +  D +S+  +I  Y   G   +A  LF  M +  E  + N+ T++  + ACA + S 
Sbjct: 86  QEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDL--EGVIANQVTLINAIDACASLPSE 143

Query: 250 ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309
           E G  V ++     L S+  V  +L++M+ KC ++  AR +F+S+ ++++++WN M+  Y
Sbjct: 144 EEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVY 203

Query: 310 THTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNN 369
           +     K+A+ +FR M    ++P+ VTFL+++ ACA L A   G+ +H  I  +   ++ 
Sbjct: 204 SQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMD- 262

Query: 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG 429
           V+L T+++  Y KCG +  A  +FD +G K   +W+A+++  A +G   +A+ L+  M+ 
Sbjct: 263 VALGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQ 322

Query: 430 EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489
            GL+ + ITF+G+L AC+HAG    G  YF +MI+D+ + P  +HY  ++DLLGR+G   
Sbjct: 323 GGLEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQLQ 382

Query: 490 EAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549
            +E L+ +M  +PD++ W +LLGACR+HG ++ G  +A+ + EL+PE+ G Y+LLSN+Y+
Sbjct: 383 LSEDLINSMPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELDPEDSGPYILLSNLYS 442

Query: 550 GAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDA 609
             GR D+    R  +  +G+ K PG SSIEV   VHEF+   K+HPQ   I+  ++ + A
Sbjct: 443 STGRMDEARRTRKAMRLRGITKQPGLSSIEVKDRVHEFMAAQKLHPQLGRIHAEIERLKA 502

Query: 610 LLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGN 669
            ++++G+V D   VL D++EE KE  L +HSE+LAIA+GLIST PGT + IVKNLRVC +
Sbjct: 503 RVKEAGYVADVRAVLRDVEEEEKEQLLWYHSERLAIAFGLISTPPGTALHIVKNLRVCFD 562

Query: 670 CHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           CH+A K ISK+  R+I+ RD  RFHHF++G CSC DYW
Sbjct: 563 CHAAVKAISKVVGRKIVVRDAIRFHHFENGACSCGDYW 600



 Score =  179 bits (453), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 121/434 (27%), Positives = 222/434 (51%), Gaps = 13/434 (2%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LL KC + + +   K+VHS ++K G  + +   + LIE+      G ++ A  VF+ I+E
Sbjct: 30  LLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEM--YGKCGGIAEARSVFDQIQE 87

Query: 93  PNQ--VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            N   + WN II  ++ +     A+  +  M L G + N  T    + +CA + +  EG+
Sbjct: 88  KNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSEEEGR 147

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            +HA  +   LESD  V TSL+NM+ +   +++AR VF+    ++ V++  ++  Y+   
Sbjct: 148 IVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQNW 207

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
               A Q+F  M +  E   P+  T +T++ ACA + +   G  V   I   G+  ++ +
Sbjct: 208 QCKKAIQVFRFMDL--EGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDVAL 265

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
             A++  Y KCG L  AR +F+S+ K++ ++W+ ++  Y       EA+ L+ +M+Q  +
Sbjct: 266 GTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQGGL 325

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           E N +TFL +L AC++ G    G      + ++   +     + +LID+  + G ++ +E
Sbjct: 326 EVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQLQLSE 385

Query: 391 QVFDGMGYKTLAS-WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC-NH 448
            + + M Y+  +S W A++    MHG  D+   + + +I E L P+D     +LS   + 
Sbjct: 386 DLINSMPYEPDSSAWLALLGACRMHGDVDRGARI-AELIYE-LDPEDSGPYILLSNLYSS 443

Query: 449 AGLLDIGRQYFNAM 462
            G +D  R+   AM
Sbjct: 444 TGRMDEARRTRKAM 457



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 155/288 (53%), Gaps = 17/288 (5%)

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
           ST V +L  CA   +L  G  V S +   G  S+  + N LI+MY KCG + +AR +F+ 
Sbjct: 25  STYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQ 84

Query: 294 IEKR--DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALD 351
           I+++  DVISWN +IG YT     KEAL LF+ M    +  N VT ++ + ACA L + +
Sbjct: 85  IQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSEE 144

Query: 352 LGKWIHAY-IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISG 410
            G+ +HA  +DK  +  ++  + TSL++M+ KC N+ AA  VFD +  K L +WN M++ 
Sbjct: 145 EGRIVHAIAVDKRLE--SDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAV 202

Query: 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI-----QD 465
            + + +  KA+ +F  M  EG+QPD +TF+ ++ AC        GR   + +       D
Sbjct: 203 YSQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMD 262

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
             +   + H+       G+ G  D A A+  ++  K +   W+++L A
Sbjct: 263 VALGTAVMHF------YGKCGRLDNARAIFDSLG-KKNTVTWSAILAA 303


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/480 (46%), Positives = 323/480 (67%), Gaps = 4/480 (0%)

Query: 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDL 290
           P+  T   +L ACA + +L  G  + +    +GL S + V N+L+ +Y  CG    A  +
Sbjct: 120 PDTHTYPPLLQACARLLALRYGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRV 179

Query: 291 FESIE--KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
           F+ I   +R+++SWN ++ G+       E L +FR+ML+    P+  T +SVL ACA +G
Sbjct: 180 FDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIG 239

Query: 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-KTLASWNAM 407
            L LG+ +H ++ K    + N     +LID+YAKCG +  A ++F  MG  +T+ SW ++
Sbjct: 240 VLALGRRVHVFVAKV-GLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSL 298

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           I GLA++G    AL LFS M  E L P +IT VGVL AC+H GL+D G +YF+ M  +Y 
Sbjct: 299 IVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYG 358

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
           I+P+++H GCMVDLLGRAG  +EA   + TM ++P+A +W +LLGAC +H +LE+GE+  
Sbjct: 359 ITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGACAMHKKLEIGEAAW 418

Query: 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF 587
             L+EL+P + G YVLLSN+YAG GRW DV  +R  +   G++K PG S +E+ + V+EF
Sbjct: 419 ARLVELDPGHSGDYVLLSNLYAGVGRWADVHVLRKTMVTHGVRKNPGHSLVELRNSVYEF 478

Query: 588 LVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAY 647
           ++GD+ HP++  IYEML +I   L + G++P TS VL D+++E KE AL++HSE+LAIA+
Sbjct: 479 VMGDRSHPETDQIYEMLGDIAERLRRQGYIPHTSNVLADIEDEEKESALNYHSERLAIAF 538

Query: 648 GLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            L+ + PGT IRIVKNLRVCG+CH A KLISK+++REII RDR+RFHHFK G CSC DYW
Sbjct: 539 ALLKSLPGTPIRIVKNLRVCGDCHMAIKLISKVYDREIIVRDRSRFHHFKGGACSCKDYW 598



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 157/321 (48%), Gaps = 21/321 (6%)

Query: 5   PSSLTLSPSILHFPPSSDPPYKLLQNQPSLA---------LLSKCTNMQNIKQ---VHSQ 52
           P   +L+  +  F  S+ P   L  ++  LA         LL  C  +  ++    +H++
Sbjct: 88  PDPFSLNTVLRIFASSARPRVALALHRRHLAPPDTHTYPPLLQACARLLALRYGEGLHAE 147

Query: 53  IIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP--NQVIWNNIIRGHSLSSS 110
             K GL +  F  + L+ +      G    A  VF+ I  P  N V WN+++ G + +  
Sbjct: 148 ACKNGLVSLVFVKNSLVHLYGAC--GLFESAHRVFDEIPPPERNLVSWNSVLNGFAANGR 205

Query: 111 PVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTS 170
           P   +  +  M+   F P+ +T   +L +CA+I  ++ G+++H  V K+GL  +     +
Sbjct: 206 PNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGNA 265

Query: 171 LINMYAQNGELESARLVFNKSSL-RDAVSYTALITGYASRGYLDDARQLFDEMPIREENF 229
           LI++YA+ G ++ AR +F +  + R  VS+T+LI G A  G+  DA QLF  M    E  
Sbjct: 266 LIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMM--EREKL 323

Query: 230 VPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288
           +P E T+V VL AC+H G ++ G  +   +   +G+   +     ++D+  + G + +A 
Sbjct: 324 MPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAH 383

Query: 289 DLFESIE-KRDVISWNVMIGG 308
           +   ++  + + + W  ++G 
Sbjct: 384 NYITTMPLEPNAVVWRTLLGA 404


>gi|115473893|ref|NP_001060545.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|24414187|dbj|BAC22429.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113612081|dbj|BAF22459.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|125559498|gb|EAZ05034.1| hypothetical protein OsI_27217 [Oryza sativa Indica Group]
 gi|125601406|gb|EAZ40982.1| hypothetical protein OsJ_25464 [Oryza sativa Japonica Group]
          Length = 544

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 249/582 (42%), Positives = 354/582 (60%), Gaps = 47/582 (8%)

Query: 129 NTYTFPFILKSCAKISAISEG-KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           N ++F F+L+  +  +A       +HA ++KLGL+    VH +LI  YA +G ++ AR V
Sbjct: 7   NQHSFLFLLREASASAAARRRLPPLHALLVKLGLQPYARVHNALIQAYAASGLVDDARRV 66

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
           F+  S RD VS+ ++I  +A  G +  AR+LF+ +P           T VT         
Sbjct: 67  FDGMSHRDTVSFNSMIHAHAMSGDVVSARRLFERVP---------SPTPVT--------- 108

Query: 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG 307
                 W  S++ G                  + GD+  AR LFE +  RD++SWN M+ 
Sbjct: 109 ------WT-SMVAG----------------LCRAGDVAAARRLFEEMPVRDLVSWNAMMS 145

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ-K 366
           G        EAL LFR+M+     PN  T LS L ACA  GAL+ GKWIHA++++    +
Sbjct: 146 GLAGNRRPVEALCLFRRMMAEGFAPNRGTVLSALAACAGAGALETGKWIHAFVERKRLFR 205

Query: 367 LNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSR 426
             +  L T+L+DMYAKCG ++ A  VF  +  +   +WNAMI+GLAM+G + KAL +F +
Sbjct: 206 WWDEFLGTALLDMYAKCGAVELALDVFTKLRSRNTCTWNAMINGLAMNGYSAKALDMFRK 265

Query: 427 M-IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485
           M +   + PD++TFVGVL AC+H G +D+GR++F+ + + Y I   L+HY CMVDLL R+
Sbjct: 266 MELDRTVVPDEVTFVGVLLACSHGGFVDVGREHFHMIEKKYGIRLILEHYACMVDLLARS 325

Query: 486 GLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545
           G   EA  ++  M MKPDA +W +LLG CR+H  +++ E+    + E+E    G +VLLS
Sbjct: 326 GHLQEAHKIIAGMPMKPDAVVWRALLGGCRLHKDVKMAETA---ISEMEATCSGDHVLLS 382

Query: 546 NMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLD 605
           N+YA  GRW  V  +R  +  KG++K+PGCSSIE+   +HEF+ GDK HP    I+  L 
Sbjct: 383 NLYAAVGRWSGVEDVRRTMRSKGIEKIPGCSSIEINDSIHEFVSGDKSHPSYNDIHAKLA 442

Query: 606 EIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLR 665
           EI A +++ G+V +T+EV YD++EE KE AL HHSEKLAIA+GLI   P   IRIVKNLR
Sbjct: 443 EISARMQQQGYVTETAEVFYDVEEEEKEQALGHHSEKLAIAFGLIGGPPNVAIRIVKNLR 502

Query: 666 VCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            C +CH   KL+S+I++ EI+ RDR RFHHF +G CSCND+W
Sbjct: 503 FCADCHKFAKLVSQIYHWEIVVRDRARFHHFTEGACSCNDFW 544



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 163/343 (47%), Gaps = 42/343 (12%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           GD++ A  +FE +   + V WN ++ G + +  PV A+  + RM+  GF PN  T    L
Sbjct: 120 GDVAAARRLFEEMPVRDLVSWNAMMSGLAGNRRPVEALCLFRRMMAEGFAPNRGTVLSAL 179

Query: 138 KSCAKISAISEGKQIHAHVLKLGLES--DPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
            +CA   A+  GK IHA V +  L    D F+ T+L++MYA+ G +E A  VF K   R+
Sbjct: 180 AACAGAGALETGKWIHAFVERKRLFRWWDEFLGTALLDMYAKCGAVELALDVFTKLRSRN 239

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
             ++ A+I G A  GY   A  +F +M + +   VP+E T V VL AC+H G +++G   
Sbjct: 240 TCTWNAMINGLAMNGYSAKALDMFRKMEL-DRTVVPDEVTFVGVLLACSHGGFVDVGREH 298

Query: 256 CSLIE-GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTS 313
             +IE  +G+   L     ++D+ ++ G L +A  +   +  K D + W  ++GG     
Sbjct: 299 FHMIEKKYGIRLILEHYACMVDLLARSGHLQEAHKIIAGMPMKPDAVVWRALLGGCRLHK 358

Query: 314 DYKEALMLFRQM---------LQSN----------IEPNDVTFLS----VLPACAYLGAL 350
           D K A     +M         L SN          +E    T  S     +P C+   ++
Sbjct: 359 DVKMAETAISEMEATCSGDHVLLSNLYAAVGRWSGVEDVRRTMRSKGIEKIPGCS---SI 415

Query: 351 DLGKWIHAYI--DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           ++   IH ++  DK+H   N         D++AK   I A  Q
Sbjct: 416 EINDSIHEFVSGDKSHPSYN---------DIHAKLAEISARMQ 449


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/702 (35%), Positives = 392/702 (55%), Gaps = 49/702 (6%)

Query: 41  TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNN 100
           +N + +  +H  I+K  L +   +L +         F D  +    F    E   V+   
Sbjct: 4   SNARKLTTLHGFILKRNLSSFHASLKR---------FSDKKF----FNPNHEDGGVVVER 50

Query: 101 IIRGHSLSSSPVVA-----IKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAH 155
           + R +    +  V      ++  V+++     P   T+  +++ C++  A+ EGK++H H
Sbjct: 51  LCRANRFGEAIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEH 110

Query: 156 VLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDA 215
           +   G      +   L+ MYA+ G L  AR VF++   RD  S+  ++ GYA  G L++A
Sbjct: 111 IRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEA 170

Query: 216 RQLFDEMPIREE------------------------------NFVPNESTVVTVLSACAH 245
           R+LFDEM  ++                               N  PN  TV   ++A A 
Sbjct: 171 RKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAA 230

Query: 246 MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVM 305
           +  +  G  +   I   GL S+  + ++L+DMY KCG + +AR++F+ I ++DV+SW  M
Sbjct: 231 VKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSM 290

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365
           I  Y  +S ++E   LF +++ S   PN+ TF  VL ACA L   +LGK +H Y+ +   
Sbjct: 291 IDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGF 350

Query: 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
              + +  +SL+DMY KCGNI++A+ V DG     L SW ++I G A +G+ D+AL  F 
Sbjct: 351 DPYSFAS-SSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFD 409

Query: 426 RMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485
            ++  G +PD +TFV VLSAC HAGL++ G ++F ++ + +++S    HY C+VDLL R+
Sbjct: 410 LLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARS 469

Query: 486 GLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545
           G F++ ++++  M MKP   +W S+LG C  +G ++L E  A+ L ++EPENP  YV ++
Sbjct: 470 GRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMA 529

Query: 546 NMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLD 605
           N+YA AG+W++   +R R+ + G+ K PG S  E+    H F+  D  HP    I E L 
Sbjct: 530 NIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLR 589

Query: 606 EIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLR 665
           E+   +++ G+VP TS VL+D+++E KE  L +HSEKLA+A+ ++ST+ GT I++ KNLR
Sbjct: 590 ELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLR 649

Query: 666 VCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            C +CH A K IS I  R+I  RD  RFH F++G CSC DYW
Sbjct: 650 SCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 253/678 (37%), Positives = 398/678 (58%), Gaps = 13/678 (1%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ++L  C  + +I   K++H+ +I+ G  +     + LI +      GD+S A ++F+ + 
Sbjct: 203 SVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITM--YVKCGDISNARMLFDKMP 260

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           + +++ WN +I G+  +   +  ++ +  M      P+  T   +  +C  +     G+ 
Sbjct: 261 KRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRG 320

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +H +V+K     D  ++ SLI MY+  G LE A  VF++   +D VS+TA+I    S   
Sbjct: 321 VHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKL 380

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
              A + +  M +  E  +P+E T+V+VLSACA +G L+LG  +  +    GL S++ V+
Sbjct: 381 PFKAVETYKMMEL--EGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVS 438

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N+LIDMYSKC  +  A ++F +I  ++V+SW  +I G    +   EAL+ FRQM +S ++
Sbjct: 439 NSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKES-MK 497

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           PN VT +SVL ACA +GAL  GK IHA+  +     +   L  +++DMY +CG    A  
Sbjct: 498 PNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGF-LPNAILDMYVRCGRKVPALN 556

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
            F+    K + +WN +++G A  G+A  A+ LF +M+   + PD+ITF+ +L AC+ +G+
Sbjct: 557 QFNSQK-KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGM 615

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           +  G +YFN M   Y ++P L+HY C+VD+LGRAG  D+A   ++ M ++PDAAIW +LL
Sbjct: 616 VTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALL 675

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
            ACR+H  +ELGE  AK + E + ++ G Y+LL N+YAG G WD V+ +R+ + ++G+  
Sbjct: 676 NACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSA 735

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
            PGCS +E+   VH FL GD  H QSK I  +LD   + ++++GF    S    ++ E  
Sbjct: 736 DPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENGFGNLKSSFTSEI-ESS 794

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           +      HSE+ AIA+GLI+T PG  I + KNL +C +CH+  K IS I  REI  RD  
Sbjct: 795 RADIFCGHSERQAIAFGLINTAPGMPIWVTKNLYMCHSCHNMVKFISTIVRREISVRDVE 854

Query: 692 RFHHFKDGNCSCND--YW 707
            +HHFKDG CSC D  YW
Sbjct: 855 EYHHFKDGVCSCGDEGYW 872



 Score =  254 bits (649), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 160/463 (34%), Positives = 254/463 (54%), Gaps = 17/463 (3%)

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
           FG+L  A  VF  + E +   WN ++ G++ +     A+  Y RM+ +   PN YTFP +
Sbjct: 145 FGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSV 204

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           LK+CA +S I+ GK+IHAHV++ G ESD  V  +LI MY + G++ +AR++F+K   RD 
Sbjct: 205 LKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDR 264

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           +S+ A+I+GY   G   +  +LF  M  RE +  P+  T+ TV SAC  + +  LG  V 
Sbjct: 265 ISWNAMISGYFENGGGLEGLELFSMM--RELSVDPDLITMTTVASACELLDNERLGRGVH 322

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGG-YTHTSDY 315
             +     G ++ + N+LI MYS  G L +A  +F  +E +DV+SW  MI    +H   +
Sbjct: 323 GYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPF 382

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
           K A+  ++ M    I P+++T +SVL ACA +G LDLG  +H    K    +++V +  S
Sbjct: 383 K-AVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGL-VSHVIVSNS 440

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           LIDMY+KC  +  A +VF  +  K + SW ++I GL ++ ++ +AL LF R + E ++P+
Sbjct: 441 LIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEAL-LFFRQMKESMKPN 499

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG----CMVDLLGRAGLFDEA 491
            +T + VLSAC   G L  G++     I  + +   +   G     ++D+  R G   + 
Sbjct: 500 SVTLISVLSACARIGALMRGKE-----IHAHALRTGVGFDGFLPNAILDMYVRCG--RKV 552

Query: 492 EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534
            AL +    K D   W  LL      G+ +L   +   +LELE
Sbjct: 553 PALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELE 595



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 133/392 (33%), Positives = 199/392 (50%), Gaps = 21/392 (5%)

Query: 136 ILKSCAKISAISEGKQIHAHV--------LKLGLESDPFVHTSLINMYAQNGELESARLV 187
           +L+ C    A  EG +++  V        ++LG         +L++M+ + G L  A  V
Sbjct: 103 LLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLG--------NALLSMFVRFGNLLDAWYV 154

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
           F K S RD  S+  L+ GYA  G  D+A  L+  M   E    PN  T  +VL  CA + 
Sbjct: 155 FGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE--IRPNVYTFPSVLKTCAGVS 212

Query: 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG 307
            +  G  + + +   G  S++ V NALI MY KCGD+  AR LF+ + KRD ISWN MI 
Sbjct: 213 DIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMIS 272

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
           GY       E L LF  M + +++P+ +T  +V  AC  L    LG+ +H Y+ K+    
Sbjct: 273 GYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFG- 331

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
            ++S+  SLI MY+  G ++ AE VF  M  K + SW AMI+ L  H    KA+  +  M
Sbjct: 332 GDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMM 391

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
             EG+ PD+IT V VLSAC   G LD+G +     I+   +S  +     ++D+  +   
Sbjct: 392 ELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVS-NSLIDMYSKCKC 450

Query: 488 FDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
            D A  + + +  K +   WTSL+   R++ R
Sbjct: 451 VDNALEVFRNISGK-NVVSWTSLILGLRINNR 481



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 172/346 (49%), Gaps = 12/346 (3%)

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
           +G L+ A +  + M   E      E   + +L  C    + + G+ V  L+        +
Sbjct: 75  QGNLEQAMKRLESML--ELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCV 132

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
            + NAL+ M+ + G+L+ A  +F  + +RDV SWNV++GGY     + EAL L+ +ML +
Sbjct: 133 RLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWA 192

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            I PN  TF SVL  CA +  +  GK IHA++ +   + ++V +  +LI MY KCG+I  
Sbjct: 193 EIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFE-SDVDVGNALITMYVKCGDISN 251

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A  +FD M  +   SWNAMISG   +G   + L LFS M    + PD IT   V SAC  
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACE- 310

Query: 449 AGLLD---IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
             LLD   +GR     +++  +    +     ++ +    G  +EAE +   ME K D  
Sbjct: 311 --LLDNERLGRGVHGYVVKS-EFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESK-DVV 366

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA 551
            WT+++ +   H +L         ++ELE   P    L+S + A A
Sbjct: 367 SWTAMIASLVSH-KLPFKAVETYKMMELEGILPDEITLVSVLSACA 411


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/561 (41%), Positives = 347/561 (61%), Gaps = 8/561 (1%)

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           +Q HAH++  G      + T L+ +    G +   R +F   S  D+  + +LI   +  
Sbjct: 27  QQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKASSKF 86

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
           G+  DA   +  M +     VP+  T  +V+ ACA +  L +G  V S +   G  S+  
Sbjct: 87  GFSLDAVLFYRRMLL--SRIVPSTYTFTSVIKACADLSLLCIGTLVHSHVFVSGYASDSF 144

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           V  ALI  Y+K      AR +F+ + +R +++WN MI GY       EA+ +F +M +S 
Sbjct: 145 VQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGLANEAVEVFNKMRESR 204

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           +EP+  TF+SVL AC+ LG+LD G W+H  I  +   +N V L TSL++M+++CG++  A
Sbjct: 205 VEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMN-VVLATSLVNMFSRCGDVGRA 263

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
             VF  M    +  W AMISG  MHG   +A+ +F RM   G+ P+ +TFV VLSAC HA
Sbjct: 264 RAVFYSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMKARGVVPNSVTFVAVLSACAHA 323

Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM---EMKPDAAI 506
           GL+D GR  F +M Q+Y + P ++H+ CMVD+ GR GL +EA   +K +   E+ P  A+
Sbjct: 324 GLIDEGRSVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVKGLNSDELVP--AV 381

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
           WT++LGAC++H   +LG  VA++L+  EPENPG YVLLSNMYA AGR D V ++R  +  
Sbjct: 382 WTAMLGACKMHKNFDLGVEVAENLINAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQ 441

Query: 567 KGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYD 626
           +G+KK  G S+I+V +  + F +GDK HP++  IY  LDE+    + +G+ P     +++
Sbjct: 442 RGLKKQVGYSTIDVDNRSYLFSMGDKSHPETNEIYCFLDELIWRCKDAGYAPVPESAMHE 501

Query: 627 MDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREII 686
           ++ E +E AL +HSEKLA+A+GL+ T  G T+RIVKNLR+C +CHSA K IS + NREII
Sbjct: 502 LEGEEREYALRYHSEKLAVAFGLMKTGDGVTLRIVKNLRICEDCHSAIKFISAVMNREII 561

Query: 687 ARDRNRFHHFKDGNCSCNDYW 707
            RD+ RFHHF++G+CSC+DYW
Sbjct: 562 VRDKLRFHHFREGSCSCSDYW 582



 Score =  254 bits (649), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 161/520 (30%), Positives = 276/520 (53%), Gaps = 23/520 (4%)

Query: 22  DPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEI-CAVSPFGDL 80
           D   + +++    A++S   +++ ++Q H+ ++ TG H ++  L+KL+ + CA    G +
Sbjct: 2   DGKERKIKSAEYEAVVSAGPHLRRLQQAHAHLVVTGCHRSRALLTKLLTLSCAA---GSI 58

Query: 81  SYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSC 140
           +Y   +F ++ +P+  ++N++I+  S     + A+ FY RM+LS  VP+TYTF  ++K+C
Sbjct: 59  AYTRRLFRSVSDPDSFLFNSLIKASSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKAC 118

Query: 141 AKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYT 200
           A +S +  G  +H+HV   G  SD FV  +LI  YA++     AR VF++   R  V++ 
Sbjct: 119 ADLSLLCIGTLVHSHVFVSGYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWN 178

Query: 201 ALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE 260
           ++I+GY   G  ++A ++F++M  RE    P+ +T V+VLSAC+ +GSL+ G W+   I 
Sbjct: 179 SMISGYEQNGLANEAVEVFNKM--RESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIV 236

Query: 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALM 320
           G G+  N+ +  +L++M+S+CGD+ +AR +F S+ + +V+ W  MI GY       EA+ 
Sbjct: 237 GSGITMNVVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMHGYGVEAME 296

Query: 321 LFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMY 380
           +F +M    + PN VTF++VL ACA+ G +D G+ + A + + +  +  V     ++DM+
Sbjct: 297 VFHRMKARGVVPNSVTFVAVLSACAHAGLIDEGRSVFASMKQEYGVVPGVEHHVCMVDMF 356

Query: 381 AKCGNIKAAEQVFDGMGYKTL--ASWNAMISGLAMHGKADKALSLFSRMI-GEGLQPDDI 437
            + G +  A Q   G+    L  A W AM+    MH   D  + +   +I  E   P   
Sbjct: 357 GRGGLLNEAYQFVKGLNSDELVPAVWTAMLGACKMHKNFDLGVEVAENLINAEPENPGHY 416

Query: 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF---DEAEAL 494
             +  + A   AG +D      N MIQ      K Q     +D+  R+ LF   D++   
Sbjct: 417 VLLSNMYAL--AGRMDRVESVRNVMIQR---GLKKQVGYSTIDVDNRSYLFSMGDKSHPE 471

Query: 495 LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534
              +    D  IW      C+  G   + ES A H LE E
Sbjct: 472 TNEIYCFLDELIWR-----CKDAGYAPVPES-AMHELEGE 505


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 246/675 (36%), Positives = 396/675 (58%), Gaps = 13/675 (1%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
            +L  C  M N+   +++H  +I+ G  +    ++ LI +      GD++ A LVF+ + 
Sbjct: 212 CVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITM--YVKCGDVNTARLVFDKMP 269

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             +++ WN +I G+  +   +  ++ +  MI     P+  T   ++ +C  +     G+Q
Sbjct: 270 NRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQ 329

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IH +VL+     DP +H SLI MY+  G +E A  VF+++  RD VS+TA+I+GY +   
Sbjct: 330 IHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLM 389

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
              A + +  M    E  +P+E T+  VLSAC+ + +L++G  +  + +  GL S   V 
Sbjct: 390 PQKALETYKMM--EAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVA 447

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N+LIDMY+KC  + KA ++F S  +++++SW  +I G    +   EAL  FR+M++  ++
Sbjct: 448 NSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIR-RLK 506

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           PN VT + VL ACA +GAL  GK IHA+  +     +   +  +++DMY +CG ++ A +
Sbjct: 507 PNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGF-MPNAILDMYVRCGRMEYAWK 565

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
            F  + ++ + SWN +++G A  GK   A  LF RM+   + P+++TF+ +L AC+ +G+
Sbjct: 566 QFFSVDHE-VTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGM 624

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           +  G +YFN+M   Y I P L+HY C+VDLLGR+G  +EA   ++ M MKPD A+W +LL
Sbjct: 625 VAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWGALL 684

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
            +CR+H  +ELGE  A+++ + +  + G Y+LLSN+YA  G+WD VA +R  +   G+  
Sbjct: 685 NSCRIHHHVELGELAAENIFQDDTTSVGYYILLSNLYADNGKWDKVAEVRKMMRQNGLIV 744

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFV-PDTSEVLYDMDEE 630
            PGCS +EV   VH FL  D  HPQ K I  +L+     ++++G   P++S +  D+ E 
Sbjct: 745 DPGCSWVEVKGTVHAFLSSDNFHPQIKEINALLERFYKKMKEAGVEGPESSHM--DIMEA 802

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            K      HSE+LAI +GLI++ PG  I + KNL +C +CH+  K IS+   REI  RD 
Sbjct: 803 SKADIFCGHSERLAIVFGLINSGPGMPIWVTKNLYMCQSCHNIVKFISREVRREISVRDA 862

Query: 691 NRFHHFKDGNCSCND 705
            +FHHFK G CSC D
Sbjct: 863 EQFHHFKGGICSCTD 877



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 133/384 (34%), Positives = 211/384 (54%), Gaps = 10/384 (2%)

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
           FG+L  A  VF  + + N   WN ++ G++ +     A+  Y RM+  G  P+ YTFP +
Sbjct: 154 FGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCV 213

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L++C  +  +  G++IH HV++ G ESD  V  +LI MY + G++ +ARLVF+K   RD 
Sbjct: 214 LRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDR 273

Query: 197 VSYTALITGYASRGYLDDARQLFDEM---PIREENFVPNESTVVTVLSACAHMGSLELGN 253
           +S+ A+I+GY   G   +  +LF  M   P+      P+  T+ +V++AC  +G   LG 
Sbjct: 274 ISWNAMISGYFENGVCLEGLRLFGMMIKYPVD-----PDLMTMTSVITACELLGDDRLGR 328

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTS 313
            +   +     G +  + N+LI MYS  G + +A  +F   E RD++SW  MI GY +  
Sbjct: 329 QIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCL 388

Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
             ++AL  ++ M    I P+++T   VL AC+ L  LD+G  +H  + K    ++   + 
Sbjct: 389 MPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHE-VAKQKGLVSYSIVA 447

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
            SLIDMYAKC  I  A ++F     K + SW ++I GL ++ +  +AL  F  MI   L+
Sbjct: 448 NSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMI-RRLK 506

Query: 434 PDDITFVGVLSACNHAGLLDIGRQ 457
           P+ +T V VLSAC   G L  G++
Sbjct: 507 PNSVTLVCVLSACARIGALTCGKE 530



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 126/392 (32%), Positives = 194/392 (49%), Gaps = 21/392 (5%)

Query: 136 ILKSCAKISAISEGKQIHAHV--------LKLGLESDPFVHTSLINMYAQNGELESARLV 187
           +++ C    A  EG +++++V        L+LG         +L++M+ + G L  A  V
Sbjct: 112 LIRLCEWKRARKEGSRVYSYVSISMSHLSLQLG--------NALLSMFVRFGNLVDAWYV 163

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
           F +   R+  S+  L+ GYA  G  D+A  L+  M        P+  T   VL  C  M 
Sbjct: 164 FGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRM--LWVGVKPDVYTFPCVLRTCGGMP 221

Query: 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG 307
           +L  G  +   +  +G  S++ V NALI MY KCGD+  AR +F+ +  RD ISWN MI 
Sbjct: 222 NLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMIS 281

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
           GY       E L LF  M++  ++P+ +T  SV+ AC  LG   LG+ IH Y+ +  +  
Sbjct: 282 GYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRT-EFG 340

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
            + S+  SLI MY+  G I+ AE VF     + L SW AMISG        KAL  +  M
Sbjct: 341 RDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMM 400

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
             EG+ PD+IT   VLSAC+    LD+G        Q   +S  +     ++D+  +   
Sbjct: 401 EAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVA-NSLIDMYAKCKC 459

Query: 488 FDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
            D+A  +  +  ++ +   WTS++   R++ R
Sbjct: 460 IDKALEIFHS-TLEKNIVSWTSIILGLRINNR 490



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 158/306 (51%), Gaps = 9/306 (2%)

Query: 210 GYLDDARQLFDEMPIREENFVPNES-TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
           G LD A    D M    E  +P E    V ++  C    + + G+ V S +       +L
Sbjct: 85  GNLDRAMSYLDSM---HELRIPVEDDAYVALIRLCEWKRARKEGSRVYSYVSISMSHLSL 141

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
            + NAL+ M+ + G+LV A  +F  +EKR++ SWNV++GGY     + EAL L+ +ML  
Sbjct: 142 QLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWV 201

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            ++P+  TF  VL  C  +  L  G+ IH ++ + +   ++V +  +LI MY KCG++  
Sbjct: 202 GVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIR-YGFESDVDVVNALITMYVKCGDVNT 260

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A  VFD M  +   SWNAMISG   +G   + L LF  MI   + PD +T   V++AC  
Sbjct: 261 ARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACEL 320

Query: 449 AGLLDIGRQYFNAMIQ-DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
            G   +GRQ    +++ ++   P +  +  ++ +    GL +EAE +    E + D   W
Sbjct: 321 LGDDRLGRQIHGYVLRTEFGRDPSI--HNSLIPMYSSVGLIEEAETVFSRTECR-DLVSW 377

Query: 508 TSLLGA 513
           T+++  
Sbjct: 378 TAMISG 383


>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
 gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 254/596 (42%), Positives = 367/596 (61%), Gaps = 25/596 (4%)

Query: 130 TYTFPFILKSCAKISAISEGKQIHAHVLKLGL---ESDPFVHTSLINMYAQNGELESARL 186
           T  +  +L+   +   +S+ KQIHA  L+  L    +  F+++ +++ ++   +L  A  
Sbjct: 19  TNHYNLLLQHLNECKDMSQLKQIHALSLRSTLPNHSTTLFLYSRILH-FSSLHDLNYAYR 77

Query: 187 VFNKSSLRDAVSYTALITGYASRGYLDDARQ---LFDEMPIREENFVPNESTVVTVLSAC 243
           VF++    ++  +  LI   A    +   R+   L++ M  R   F P+  T   VL AC
Sbjct: 78  VFDQVDNPNSFMWNILIRACAQSQSVHLKREAILLYNTMLQRSSPF-PDNHTFPFVLKAC 136

Query: 244 AHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN 303
           A++ +L  G    + +   G  S++++ N+LI  Y+ CG L  A+++F+ + +R ++SWN
Sbjct: 137 AYLFALFEGKQAHAHLLKLGFQSDVYINNSLIHFYASCGSLESAKNVFDKMPQRSLVSWN 196

Query: 304 VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363
            MI  +    +++ AL LF Q  Q   EP+  T  SV+ ACA L AL LG W HA++ +N
Sbjct: 197 AMIDAFVLFGEFETALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAHAFLLRN 256

Query: 364 --------HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHG 415
                   H  +NN     SL+DMY KCG++  A Q+F+GM    + SWN+MI G AMHG
Sbjct: 257 CGVSVARDHVLVNN-----SLLDMYCKCGSLDIATQIFEGMQKHDVTSWNSMILGFAMHG 311

Query: 416 KADKALSLFSRMIG-EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQH 474
           K + AL  F RMI      P+ ITFVGVLSACNH  +++ GR+YF+ M+ +YKI P+L+H
Sbjct: 312 KGELALECFERMIRISRFVPNSITFVGVLSACNHRYMVNEGRKYFDMMVNEYKIEPQLEH 371

Query: 475 YGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA-CRVHGRLELGESVAKHLLEL 533
           YGC+VD+L RAGL DEA  L+ +M MKPD  IW SLL + C+ +  +EL E++A+ +LE 
Sbjct: 372 YGCLVDILARAGLIDEALELVASMPMKPDVVIWRSLLDSCCKKNASVELSENIARQILES 431

Query: 534 -EPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDK 592
            E ++ G YVLLS +YA A RW+DV  +R  + + G+ K PGCS IEV  V HEF  GD 
Sbjct: 432 EEADSSGVYVLLSRVYASASRWNDVGLVRKLMTNNGILKEPGCSLIEVDGVTHEFFAGDT 491

Query: 593 VHPQSKHIYEMLDEIDALLEKSGFVPDTSEV-LYDMDEEWKEGALSHHSEKLAIAYGLIS 651
            HPQ+K IY++L+ ++  ++ +G+ PD S+  + D     K  +L  HSE+LAIA GL++
Sbjct: 492 SHPQTKEIYQVLNVVEERIDSTGYKPDYSQAPMVDELNTSKRDSLRLHSERLAIALGLLN 551

Query: 652 TKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            KPG  IRI KNLRVC +CH  T LIS+IFN EII RDR RFHHFKDG+CSC DYW
Sbjct: 552 LKPGMPIRIFKNLRVCDDCHKVTGLISEIFNVEIIVRDRVRFHHFKDGSCSCMDYW 607



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 141/429 (32%), Positives = 230/429 (53%), Gaps = 18/429 (4%)

Query: 23  PPYKLLQNQPS------LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSP 76
           PP +++ ++P+      L  L++C +M  +KQ+H+  +++ L N    L     I   S 
Sbjct: 9   PPPQIVTSKPTNHYNLLLQHLNECKDMSQLKQIHALSLRSTLPNHSTTLFLYSRILHFSS 68

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVV---AIKFYVRMI-LSGFVPNTYT 132
             DL+YA  VF+ +  PN  +WN +IR  + S S  +   AI  Y  M+  S   P+ +T
Sbjct: 69  LHDLNYAYRVFDQVDNPNSFMWNILIRACAQSQSVHLKREAILLYNTMLQRSSPFPDNHT 128

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192
           FPF+LK+CA + A+ EGKQ HAH+LKLG +SD +++ SLI+ YA  G LESA+ VF+K  
Sbjct: 129 FPFVLKACAYLFALFEGKQAHAHLLKLGFQSDVYINNSLIHFYASCGSLESAKNVFDKMP 188

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
            R  VS+ A+I  +   G  + A QLF +   +     P+  T+ +V++ACA + +L LG
Sbjct: 189 QRSLVSWNAMIDAFVLFGEFETALQLFVQFQQQFFE--PDGYTIQSVINACAGLCALSLG 246

Query: 253 NWVCS-LIEGHGLG---SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGG 308
            W  + L+   G+     ++ V N+L+DMY KCG L  A  +FE ++K DV SWN MI G
Sbjct: 247 MWAHAFLLRNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSWNSMILG 306

Query: 309 YTHTSDYKEALMLFRQMLQ-SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
           +      + AL  F +M++ S   PN +TF+ VL AC +   ++ G+     +   ++  
Sbjct: 307 FAMHGKGELALECFERMIRISRFVPNSITFVGVLSACNHRYMVNEGRKYFDMMVNEYKIE 366

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSR 426
             +  +  L+D+ A+ G I  A ++   M  K  +  W +++        + +     +R
Sbjct: 367 PQLEHYGCLVDILARAGLIDEALELVASMPMKPDVVIWRSLLDSCCKKNASVELSENIAR 426

Query: 427 MIGEGLQPD 435
            I E  + D
Sbjct: 427 QILESEEAD 435


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/573 (42%), Positives = 368/573 (64%), Gaps = 11/573 (1%)

Query: 135 FILKSCAKISAISEGKQIHAHVLK--LGLESDPFVHTSLINMYAQN--GELESARLVFNK 190
            +++ C  +  +   +QIHA +L   + + S  F    +I   A +  G+++ AR +F++
Sbjct: 62  LLIRKCRSMRVL---RQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQ 118

Query: 191 SSLRDAVSYTALITGYA-SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL 249
               +  S+ ++I G + S+    +   LF +M +R     PN  T+  VL AC+ + +L
Sbjct: 119 IQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKM-VRRGYPNPNTFTMAFVLKACSIVSAL 177

Query: 250 ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309
           E G  V + +   G GS+  V  AL++ Y+KC D+V A  +F+ I  R++++W+ MI GY
Sbjct: 178 EEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGY 237

Query: 310 THTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNN 369
                  EAL LFR M ++ + P++VT +SV+ ACA  GALD GKW+HAYI+K   +  +
Sbjct: 238 ARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIE-TD 296

Query: 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG 429
           + L T+L++MYAKCG I+ A++VFD M  K   +W++MI GLA++G A+ AL  F RM  
Sbjct: 297 LELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEE 356

Query: 430 EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489
             ++P+ +TF+GVLSAC H+GL+  GR+Y+++M++ + I P ++ YGCMVDLL RA L +
Sbjct: 357 AKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLE-FGIVPSMELYGCMVDLLCRASLVE 415

Query: 490 EAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549
           +A  L++TM + P+  IW +LL  C+    L+  E VA+ LLELEP N   Y+LLSN+YA
Sbjct: 416 DACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYA 475

Query: 550 GAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDA 609
              +W+ ++ +R ++   G+K VPGCSSIEV  +VHEF++GD  HP++  + E+L +I  
Sbjct: 476 SMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISK 535

Query: 610 LLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGN 669
            +   G  P  S+VL+++ +E KE AL  HSE+LAIAYGL+ TK    IRIVKNLRVCG+
Sbjct: 536 RVHAVGHQPGISDVLHNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGD 595

Query: 670 CHSATKLISKIFNREIIARDRNRFHHFKDGNCS 702
           CH  TK+IS  + REII RDR RFH F +G+CS
Sbjct: 596 CHEVTKIISAEYRREIIVRDRVRFHKFVNGSCS 628



 Score =  246 bits (628), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 121/323 (37%), Positives = 213/323 (65%), Gaps = 6/323 (1%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGL--HNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L+ KC +M+ ++Q+H++++   +   +  F L K+I  CA+SP+GD+ YA  +F  I+ P
Sbjct: 63  LIRKCRSMRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRP 122

Query: 94  NQVIWNNIIRGHSLSSSPVV-AIKFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQ 151
           N   WN++IRG S S +P    +  + +M+  G+  PNT+T  F+LK+C+ +SA+ EG+Q
Sbjct: 123 NIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQ 182

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +HA+VLK G  S PFV T+L+N YA+  ++  A  VF++ + R+ V+++ +I+GYA  G 
Sbjct: 183 VHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGL 242

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
           +++A  LF +M  ++   VP+E T+V+V+SACA  G+L+ G WV + I    + ++L ++
Sbjct: 243 VNEALGLFRDM--QKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELS 300

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
            AL++MY+KCG + +A+++F+++  +D  +W+ MI G       ++AL  F +M ++ ++
Sbjct: 301 TALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVK 360

Query: 332 PNDVTFLSVLPACAYLGALDLGK 354
           PN VTF+ VL ACA+ G +  G+
Sbjct: 361 PNHVTFIGVLSACAHSGLVSEGR 383


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 253/678 (37%), Positives = 398/678 (58%), Gaps = 13/678 (1%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ++L  C  + +I   K++H+ +I+ G  +     + LI +      GD+S A ++F+ + 
Sbjct: 203 SVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITM--YVKCGDISNARMLFDKMP 260

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           + +++ WN +I G+  +   +  ++ +  M      P+  T   +  +C  +     G+ 
Sbjct: 261 KRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRG 320

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +H +V+K     D  ++ SLI MY+  G LE A  VF++   +D VS+TA+I    S   
Sbjct: 321 VHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKL 380

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
              A + +  M +  E  +P+E T+V+VLSACA +G L+LG  +  +    GL S++ V+
Sbjct: 381 PFKAVETYKMMEL--EGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVS 438

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N+LIDMYSKC  +  A ++F +I  ++V+SW  +I G    +   EAL+ FRQM +S ++
Sbjct: 439 NSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKES-MK 497

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           PN VT +SVL ACA +GAL  GK IHA+  +     +   L  +++DMY +CG    A  
Sbjct: 498 PNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGF-LPNAILDMYVRCGRKVPALN 556

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
            F+    K + +WN +++G A  G+A  A+ LF +M+   + PD+ITF+ +L AC+ +G+
Sbjct: 557 QFNSQK-KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGM 615

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           +  G +YFN M   Y ++P L+HY C+VD+LGRAG  D+A   ++ M ++PDAAIW +LL
Sbjct: 616 VTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALL 675

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
            ACR+H  +ELGE  AK + E + ++ G Y+LL N+YAG G WD V+ +R+ + ++G+  
Sbjct: 676 NACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSA 735

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
            PGCS +E+   VH FL GD  H QSK I  +LD   + ++++GF    S    ++ E  
Sbjct: 736 DPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENGFGNLKSSFTSEI-ESS 794

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           +      HSE+ AIA+GLI+T PG  I + KNL +C +CH+  K IS I  REI  RD  
Sbjct: 795 RADIFCGHSERQAIAFGLINTAPGMPIWVXKNLYMCHSCHNMVKFISTIVRREISVRDVE 854

Query: 692 RFHHFKDGNCSCND--YW 707
            +HHFKDG CSC D  YW
Sbjct: 855 EYHHFKDGVCSCGDEGYW 872



 Score =  254 bits (649), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 160/463 (34%), Positives = 254/463 (54%), Gaps = 17/463 (3%)

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
           FG+L  A  VF  + E +   WN ++ G++ +     A+  Y RM+ +   PN YTFP +
Sbjct: 145 FGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSV 204

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           LK+CA +S I+ GK+IHAHV++ G ESD  V  +LI MY + G++ +AR++F+K   RD 
Sbjct: 205 LKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDR 264

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           +S+ A+I+GY   G   +  +LF  M  RE +  P+  T+ TV SAC  + +  LG  V 
Sbjct: 265 ISWNAMISGYFENGGGLEGLELFSMM--RELSVDPDLITMTTVASACELLDNERLGRGVH 322

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGG-YTHTSDY 315
             +     G ++ + N+LI MYS  G L +A  +F  +E +DV+SW  MI    +H   +
Sbjct: 323 GYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPF 382

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
           K A+  ++ M    I P+++T +SVL ACA +G LDLG  +H    K    +++V +  S
Sbjct: 383 K-AVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGL-VSHVIVSNS 440

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           LIDMY+KC  +  A +VF  +  K + SW ++I GL ++ ++ +AL LF R + E ++P+
Sbjct: 441 LIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEAL-LFFRQMKESMKPN 499

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG----CMVDLLGRAGLFDEA 491
            +T + VLSAC   G L  G++     I  + +   +   G     ++D+  R G   + 
Sbjct: 500 SVTLISVLSACARIGALMRGKE-----IHAHALRTGVGFDGFLPNAILDMYVRCG--RKV 552

Query: 492 EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534
            AL +    K D   W  LL      G+ +L   +   +LELE
Sbjct: 553 PALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELE 595



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 133/392 (33%), Positives = 199/392 (50%), Gaps = 21/392 (5%)

Query: 136 ILKSCAKISAISEGKQIHAHV--------LKLGLESDPFVHTSLINMYAQNGELESARLV 187
           +L+ C    A  EG +++  V        ++LG         +L++M+ + G L  A  V
Sbjct: 103 LLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLG--------NALLSMFVRFGNLLDAWYV 154

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
           F K S RD  S+  L+ GYA  G  D+A  L+  M   E    PN  T  +VL  CA + 
Sbjct: 155 FGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE--IRPNVYTFPSVLKTCAGVS 212

Query: 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG 307
            +  G  + + +   G  S++ V NALI MY KCGD+  AR LF+ + KRD ISWN MI 
Sbjct: 213 DIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMIS 272

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
           GY       E L LF  M + +++P+ +T  +V  AC  L    LG+ +H Y+ K+    
Sbjct: 273 GYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFG- 331

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
            ++S+  SLI MY+  G ++ AE VF  M  K + SW AMI+ L  H    KA+  +  M
Sbjct: 332 GDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMM 391

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
             EG+ PD+IT V VLSAC   G LD+G +     I+   +S  +     ++D+  +   
Sbjct: 392 ELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVS-NSLIDMYSKCKC 450

Query: 488 FDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
            D A  + + +  K +   WTSL+   R++ R
Sbjct: 451 VDNALEVFRNISGK-NVVSWTSLILGLRINNR 481



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 172/346 (49%), Gaps = 12/346 (3%)

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
           +G L+ A +  + M   E      E   + +L  C    + + G+ V  L+        +
Sbjct: 75  QGNLEQAMKRLESML--ELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCV 132

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
            + NAL+ M+ + G+L+ A  +F  + +RDV SWNV++GGY     + EAL L+ +ML +
Sbjct: 133 RLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWA 192

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            I PN  TF SVL  CA +  +  GK IHA++ +   + ++V +  +LI MY KCG+I  
Sbjct: 193 EIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFE-SDVDVGNALITMYVKCGDISN 251

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A  +FD M  +   SWNAMISG   +G   + L LFS M    + PD IT   V SAC  
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACE- 310

Query: 449 AGLLD---IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
             LLD   +GR     +++  +    +     ++ +    G  +EAE +   ME K D  
Sbjct: 311 --LLDNERLGRGVHGYVVKS-EFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESK-DVV 366

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA 551
            WT+++ +   H +L         ++ELE   P    L+S + A A
Sbjct: 367 SWTAMIASLVSH-KLPFKAVETYKMMELEGILPDEITLVSVLSACA 411


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 258/625 (41%), Positives = 383/625 (61%), Gaps = 40/625 (6%)

Query: 101 IIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG 160
           ++R +S        +  Y +M   G  P+ + +P ++KS     A + G   HAHVLKLG
Sbjct: 1   MLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKS-----AGTGGIGFHAHVLKLG 55

Query: 161 LESDPFVHTSLINMYAQN-----------GELES---ARLVFNKSSLRDAVSYTALITGY 206
             SD FV  ++I+MYA+             + ES   A+ +F+    R+ +++TA++TGY
Sbjct: 56  HGSDAFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGY 115

Query: 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVT---VLSACAHMGSLELGNWVCSLIEGHG 263
           A    L+ AR+ FD MP         E +VV+   +LS  A  G  E    +    E  G
Sbjct: 116 AKVKDLEAARRYFDCMP---------ERSVVSWNAMLSGYAQNGLAEEA--LRLFDEMLG 164

Query: 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFR 323
              N    NA+I  Y + GDL  AR LF ++  R+V++WN MI GY        A+ LF+
Sbjct: 165 AYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFK 224

Query: 324 QMLQSN-IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
           +M+ +  + P++VT +SV+ AC +LGAL+LG W+  ++ +N  KL+ +S   ++I MY++
Sbjct: 225 EMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLS-ISGHNAMIFMYSR 283

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
           CG+++ A++VF  M  + + S+N +ISG A HG   +A++L S M   G++PD +TF+GV
Sbjct: 284 CGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGV 343

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
           L+AC+HAGLL+ GR+ F + I+D    P + HY CMVDLLGR G  ++A+  ++ M M+P
Sbjct: 344 LTACSHAGLLEEGRKVFES-IKD----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEP 398

Query: 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562
            A ++ SLL A R+H ++ELGE  A  L ELEP+N G ++LLSN+YA AGRW DV  IR 
Sbjct: 399 HAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIRE 458

Query: 563 RLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSE 622
            +   G+KK  G S +E G  +H+F+V D+ H +S  IY++L E+   + ++G++ D S 
Sbjct: 459 AMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSC 518

Query: 623 VLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFN 682
           VL D++EE KE  +  HSEKLAI Y L+ ++ G  IR+VKNLRVC +CH+A K+ISK+  
Sbjct: 519 VLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEG 578

Query: 683 REIIARDRNRFHHFKDGNCSCNDYW 707
           R II RD NRFH F DG CSC DYW
Sbjct: 579 RVIIVRDNNRFHCFNDGLCSCKDYW 603



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 113/225 (50%), Gaps = 7/225 (3%)

Query: 71  ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILS-GFVPN 129
           I A    GDL  A  +F T+   N V WN++I G++ +    +AI+ +  MI +    P+
Sbjct: 176 ISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPD 235

Query: 130 TYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN 189
             T   ++ +C  + A+  G  +   + +  ++     H ++I MY++ G +E A+ VF 
Sbjct: 236 EVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQ 295

Query: 190 KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL 249
           + + RD VSY  LI+G+A+ G+  +A  L   M  +E    P+  T + VL+AC+H G L
Sbjct: 296 EMATRDVVSYNTLISGFAAHGHGVEAINLMSTM--KEGGIEPDRVTFIGVLTACSHAGLL 353

Query: 250 ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
           E G  V   I+   +         ++D+  + G+L  A+   E +
Sbjct: 354 EEGRKVFESIKDPAIDH----YACMVDLLGRVGELEDAKRTMERM 394



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 19/166 (11%)

Query: 75  SPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFP 134
           S  G +  A  VF+ +   + V +N +I G +     V AI     M   G  P+  TF 
Sbjct: 282 SRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFI 341

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFV--HTSLINMYAQNGELESARLVFNKSS 192
            +L +C+    + EG+++   +       DP +  +  ++++  + GELE A+    +  
Sbjct: 342 GVLTACSHAGLLEEGRKVFESI------KDPAIDHYACMVDLLGRVGELEDAKRTMERMP 395

Query: 193 LR-DAVSYTALITGYASR-------GYLDDARQLFDEMPIREENFV 230
           +   A  Y +L+   ASR       G L  A +LF+  P    NF+
Sbjct: 396 MEPHAGVYGSLLN--ASRIHKQVELGEL-AANKLFELEPDNSGNFI 438


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 237/572 (41%), Positives = 357/572 (62%), Gaps = 4/572 (0%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           +L S  +  ++ +G+QIHAH++K GL+  P V   LIN Y++      +  VF +S  + 
Sbjct: 60  LLLSQTRSRSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKS 119

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
           + +++++I+ +A       A Q F  M    EN  P++    +   ACA +G  ++G  V
Sbjct: 120 STTWSSVISSFAQNEEPVLAIQYFCRMI--GENLCPDDHIFPSATKACAILGRCDVGKSV 177

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
             L+   G   ++ V ++L+DMY+KCGD+ +AR++F+ +  R+V+SW+ MI GYT   ++
Sbjct: 178 HCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEH 237

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
           +EA+ LF++ L   ++ ND T  SV+  C     L+LGK IH    K    L+   + +S
Sbjct: 238 EEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGF-VGSS 296

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           LI +Y+KCG I+ A +VFD +  K L  WNAM+   A H    +A  LF++M   G++P+
Sbjct: 297 LISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMRPN 356

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
            ITF+ VL AC+HAGL++ G++YF A+++ Y+I P  QHY  MVDLLGRAG   EA +++
Sbjct: 357 FITFLCVLYACSHAGLVEEGKKYF-ALMKKYEIEPGTQHYASMVDLLGRAGKLQEALSVI 415

Query: 496 KTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555
           K M  +P  ++W + +  CR+HG  +L    A  + EL   + G +V+LSN YA AGR++
Sbjct: 416 KGMPTEPTESVWGAFITGCRIHGNTDLAAFAADKVFELGAVSSGLHVMLSNAYAAAGRYE 475

Query: 556 DVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSG 615
           D A  R  L D+G+KK  G S IE G+ VH+F  GD+ H + K IY+ L+++   +E++G
Sbjct: 476 DAAKARKMLRDRGVKKETGLSWIEEGNRVHKFAAGDRFHVRMKEIYQKLEDLGEEMERAG 535

Query: 616 FVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATK 675
           +V DTS VL ++  E K   + +HSE+LAIA+GLIS   G  IRI+KNLRVCG+CH+A K
Sbjct: 536 YVADTSFVLREVGSEEKNQTIRYHSERLAIAFGLISIPLGRPIRIMKNLRVCGDCHNAIK 595

Query: 676 LISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            ISK+  R II RD NRFH F+DG CSC DYW
Sbjct: 596 FISKLSGRVIIVRDNNRFHRFEDGKCSCADYW 627



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/375 (31%), Positives = 198/375 (52%), Gaps = 6/375 (1%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +Q+H+ IIK+GL         LI   + +    LS    VFE     +   W+++I   +
Sbjct: 74  QQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQ--VFEESERKSSTTWSSVISSFA 131

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +  PV+AI+++ RMI     P+ + FP   K+CA +     GK +H  V+K G + D F
Sbjct: 132 QNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTGYDVDVF 191

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V +SL++MYA+ G+++ AR VF++   R+ VS++ +I GY   G  ++A +LF E  +  
Sbjct: 192 VGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEALL-- 249

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           E    N+ T+ +V+  C     LELG  +  L        +  V ++LI +YSKCG +  
Sbjct: 250 EGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSLISLYSKCGLIEG 309

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A  +F+ +  +++  WN M+      +  KEA  LF +M  + + PN +TFL VL AC++
Sbjct: 310 AYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMRPNFITFLCVLYACSH 369

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWN 405
            G ++ GK   A + K ++       + S++D+  + G ++ A  V  GM  + T + W 
Sbjct: 370 AGLVEEGKKYFALM-KKYEIEPGTQHYASMVDLLGRAGKLQEALSVIKGMPTEPTESVWG 428

Query: 406 AMISGLAMHGKADKA 420
           A I+G  +HG  D A
Sbjct: 429 AFITGCRIHGNTDLA 443


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 270/708 (38%), Positives = 405/708 (57%), Gaps = 20/708 (2%)

Query: 6   SSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFAL 65
           S + +SP       SS P Y L +             ++  ++VH  +I TGL +    +
Sbjct: 302 SMIDVSPESYVILLSSFPEYSLAEE----------VGLKKGREVHGHVITTGLVDFMVGI 351

Query: 66  SKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG 125
              + +   +  G ++ A  VF  + + + V WN++I G   +   + A++ Y  M    
Sbjct: 352 GNGL-VNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHD 410

Query: 126 FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR 185
            +P ++T    L SCA +     G+QIH   LKLG++ +  V  +L+ +YA+ G L   R
Sbjct: 411 ILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECR 470

Query: 186 LVFNKSSLRDAVSYTALITGYA-SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
            +F+     D VS+ ++I   A S   L +A   F  +  +      N  T  +VLSA +
Sbjct: 471 KIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCF--LNAQRAGQKLNRITFSSVLSAVS 528

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI-EKRDVISWN 303
            +   ELG  +  L   + +       NALI  Y KCG++     +F  + E+RD ++WN
Sbjct: 529 SLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWN 588

Query: 304 VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363
            MI GY H     +AL L   MLQ+    +   + +VL A A +  L+ G  +HA   + 
Sbjct: 589 SMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRA 648

Query: 364 HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSL 423
             + ++V + ++L+DMY+KCG +  A + F+ M  +   SWN+MISG A HG+ ++AL L
Sbjct: 649 CLE-SDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKL 707

Query: 424 FSRMIGEGLQ-PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482
           F  M  +G   PD +TFVGVLSAC+HAGLL+ G ++F +M   Y ++P+++H+ CM D+L
Sbjct: 708 FETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVL 767

Query: 483 GRAGLFDEAEALLKTMEMKPDAAIWTSLLGA-CRVHGR-LELGESVAKHLLELEPENPGA 540
           GRAG  D+ E  ++ M MKP+  IW ++LGA CR +GR  ELG+  A+ L +LEPEN   
Sbjct: 768 GRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVN 827

Query: 541 YVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHI 600
           YVLL NMYA  GRW+D+   R ++ D  +KK  G S + +   VH F+ GDK HP +  I
Sbjct: 828 YVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVI 887

Query: 601 YEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTT-IR 659
           Y+ L E++  +  +G+VP T   LYD+++E KE  LS+HSEKLA+A+ L + +  T  IR
Sbjct: 888 YKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIR 947

Query: 660 IVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           I+KNLRVCG+CHSA K ISKI  R+II RD NRFHHF+DG CSC+D+W
Sbjct: 948 IMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 133/498 (26%), Positives = 240/498 (48%), Gaps = 17/498 (3%)

Query: 27  LLQNQPS-LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF----GDLS 81
           +  NQ + +++L  C  + ++  +  + I   +    +A+  ++    +S +    G + 
Sbjct: 98  IFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVG 157

Query: 82  YALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCA 141
           YAL  F  I   N V WN+II  +S +     A + +  M   G  P  YTF  ++ +  
Sbjct: 158 YALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTAC 217

Query: 142 KISA--ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSY 199
            ++   +   +QI   + K GL +D FV + L++ +A++G L  AR VFN+   R+AV+ 
Sbjct: 218 SLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTL 277

Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
             L+ G   + + ++A +LF +M    +  V  ES V+ + S   +  + E+G      +
Sbjct: 278 NGLMVGLVRQKWGEEATKLFMDMNSMID--VSPESYVILLSSFPEYSLAEEVGLKKGREV 335

Query: 260 EGHGLGSNL-----HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
            GH + + L      + N L++MY+KCG +  AR +F  +  +D +SWN MI G      
Sbjct: 336 HGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGC 395

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
           + EA+  ++ M + +I P   T +S L +CA L    LG+ IH    K    L NVS+  
Sbjct: 396 FIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDL-NVSVSN 454

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA-DKALSLFSRMIGEGLQ 433
           +L+ +YA+ G +    ++F  M      SWN++I  LA   ++  +A+  F      G +
Sbjct: 455 ALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQK 514

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
            + ITF  VLSA +     ++G+Q     +++  I+ +      ++   G+ G  D  E 
Sbjct: 515 LNRITFSSVLSAVSSLSFGELGKQIHGLALKN-NIADEATTENALIACYGKCGEMDGCEK 573

Query: 494 LLKTMEMKPDAAIWTSLL 511
           +   M  + D   W S++
Sbjct: 574 IFSRMAERRDNVTWNSMI 591



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 132/496 (26%), Positives = 226/496 (45%), Gaps = 16/496 (3%)

Query: 28  LQNQPSLALLSKCTNMQNIKQV-HSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLV 86
           + N   L+ +  C   +   +  HS++ K  L    +  + LI   A    GD   A  V
Sbjct: 1   MTNCVPLSFVQSCVGHRGAARFFHSRLYKNRLDKDVYLCNNLIN--AYLETGDSVSARKV 58

Query: 87  FETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAI 146
           F+ +   N V W  I+ G+S +     A+ F   M+  G   N Y F  +L++C +I ++
Sbjct: 59  FDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSV 118

Query: 147 S--EGKQIHAHVLKLGLESDPFVHTSLINMYAQN-GELESARLVFNKSSLRDAVSYTALI 203
               G+QIH  + KL    D  V   LI+MY +  G +  A   F    ++++VS+ ++I
Sbjct: 119 GILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSII 178

Query: 204 TGYASRGYLDDARQLFDEMPIREENFVPNESTVVT-VLSACAHMG-SLELGNWVCSLIEG 261
           + Y+  G    A ++F  M  + +   P E T  + V +AC+     + L   +   I+ 
Sbjct: 179 SVYSQAGDQRSAFRIFSSM--QYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQK 236

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALML 321
            GL ++L V + L+  ++K G L  AR +F  +E R+ ++ N ++ G       +EA  L
Sbjct: 237 SGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKL 296

Query: 322 FRQMLQS-NIEPND-VTFLSVLP--ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           F  M    ++ P   V  LS  P  + A    L  G+ +H ++         V +   L+
Sbjct: 297 FMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLV 356

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI 437
           +MYAKCG+I  A +VF  M  K   SWN+MI+GL  +G   +A+  +  M    + P   
Sbjct: 357 NMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSF 416

Query: 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT 497
           T +  LS+C       +G+Q     ++   I   +     ++ L    G  +E   +  +
Sbjct: 417 TLISSLSSCASLKWAKLGQQIHGESLK-LGIDLNVSVSNALMTLYAETGYLNECRKIFSS 475

Query: 498 MEMKPDAAIWTSLLGA 513
           M  + D   W S++GA
Sbjct: 476 MP-EHDQVSWNSIIGA 490



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 196/418 (46%), Gaps = 25/418 (5%)

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
            H+ + K  L+ D ++  +LIN Y + G+  SAR VF++  LR+ VS+  +++GY+  G 
Sbjct: 23  FHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGE 82

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL--GNWVCSLIEGHGLGSNLH 269
             +A     +M   +E    N+   V+VL AC  +GS+ +  G  +  L+       +  
Sbjct: 83  HKEALVFLRDMV--KEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAV 140

Query: 270 VTNALIDMYSKC-GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
           V+N LI MY KC G +  A   F  IE ++ +SWN +I  Y+   D + A  +F  M   
Sbjct: 141 VSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYD 200

Query: 329 NIEPNDVTFLSVLPACAYLGALD--LGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
              P + TF S++     L   D  L + I   I K+   L ++ + + L+  +AK G++
Sbjct: 201 GSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGL-LTDLFVGSGLVSAFAKSGSL 259

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
             A +VF+ M  +   + N ++ GL      ++A  LF  M    +     ++V +LS+ 
Sbjct: 260 SYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDM-NSMIDVSPESYVILLSSF 318

Query: 447 NHAGL-----LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK 501
               L     L  GR+    +I    +   +     +V++  + G   +A  +   M  K
Sbjct: 319 PEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDK 378

Query: 502 PDAAIWTSLLGACRVHG----RLELGESVAKHLLELEPENPGAYVLLSNMYAGAG-RW 554
            D+  W S++     +G     +E  +S+ +H +      PG++ L+S++ + A  +W
Sbjct: 379 -DSVSWNSMITGLDQNGCFIEAVERYKSMRRHDIL-----PGSFTLISSLSSCASLKW 430


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/601 (40%), Positives = 363/601 (60%), Gaps = 51/601 (8%)

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNG--ELESARLVFNKSSLRDAVSYTALITGYAS 208
           +I + ++  G  SD F  + L+     +    L+ +  +F++    +   +  ++  Y  
Sbjct: 47  RILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQ 106

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA----HMGSLELGNWVCSLIEGHGL 264
               + A  L+  M   + N  P+  T   V+ ACA      G  E+ + V  +    G 
Sbjct: 107 SNSAEKALLLYKLMV--KNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKV----GF 160

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFES------------------------------- 293
            S+++V N LI+MY+ CG++  AR LF+                                
Sbjct: 161 DSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKL 220

Query: 294 ---IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350
              ++++D++SW+ +I GY     Y+EAL++F +M  + +  ++V  +SVL ACA+L  +
Sbjct: 221 FNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIV 280

Query: 351 DLGKWIHAYIDKNHQKLNNVSLWTSLI----DMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
             GK IH  + +   + + V+L  +LI    DMY KCG ++ A +VF+GM  K ++SWNA
Sbjct: 281 KTGKMIHGLVIRMGIE-SYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNA 339

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
           +I GLA++G  +++L +FS M   G+ P++ITF+GVL AC H GL+D GR +F +MI+ +
Sbjct: 340 LIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKH 399

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
            I P ++HYGCMVDLLGRAGL +EAE L+++M M PD A W +LLGAC+ HG  E+GE V
Sbjct: 400 GIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERV 459

Query: 527 AKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHE 586
            + L+EL+P++ G +VLLSN++A  G W+DV  +R  +  +G+ K PGCS IE   VVHE
Sbjct: 460 GRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHE 519

Query: 587 FLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIA 646
           FL GDK HP    +  ML+E+   L+  G+ PDT+EV  D+DEE KE  L  HSEKLAIA
Sbjct: 520 FLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIA 579

Query: 647 YGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDY 706
           +GL++  P T IRI+KNLR+C +CH+A KLISK + REI+ RDR+RFH+FK+G CSC DY
Sbjct: 580 FGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDY 639

Query: 707 W 707
           W
Sbjct: 640 W 640



 Score =  233 bits (594), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 141/445 (31%), Positives = 239/445 (53%), Gaps = 39/445 (8%)

Query: 37  LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQV 96
           L  C N++   ++ SQ+I TG  +  FA S+L++    SPF  L Y+L +F+ I   N  
Sbjct: 36  LHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGF 95

Query: 97  IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHV 156
           +WN ++R +  S+S   A+  Y  M+ +   P+ YT+P ++++CA       GK+IH HV
Sbjct: 96  MWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHV 155

Query: 157 LKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD--- 213
           LK+G +SD +V  +LINMYA  G +  AR +F++S + D+VS+ +++ GY  +G +    
Sbjct: 156 LKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVM 215

Query: 214 DARQLFDEMP------------------IREENFVP-----------NESTVVTVLSACA 244
           +A +LF+EM                   + EE  V            +E  VV+VLSACA
Sbjct: 216 EAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACA 275

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALI----DMYSKCGDLVKARDLFESIEKRDVI 300
           H+  ++ G  +  L+   G+ S +++ NALI    DMY KCG +  A ++F  +E++ V 
Sbjct: 276 HLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVS 335

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           SWN +I G       + +L +F +M  + + PN++TF+ VL AC ++G +D G+   A +
Sbjct: 336 SWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASM 395

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADK 419
            + H    NV  +  ++D+  + G +  AE++ + M     +A+W A++     HG  + 
Sbjct: 396 IEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEM 455

Query: 420 ALSLFSRMIGEGLQPDDITFVGVLS 444
              +  ++I   LQPD   F  +LS
Sbjct: 456 GERVGRKLI--ELQPDHDGFHVLLS 478


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 246/583 (42%), Positives = 352/583 (60%), Gaps = 8/583 (1%)

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
           G   ++ T+  ++K C    A+ EG  I  H+   G     F+   LINMY +   L  A
Sbjct: 56  GLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDA 115

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
             +F++   R+ +S+T +I+ Y+       A +L   M    +N  PN  T  +VL +C 
Sbjct: 116 HQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLML--RDNVRPNVYTYSSVLRSCN 173

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
            M  + + +  C +I+  GL S++ V +ALID+++K G+   A  +F+ +   D I WN 
Sbjct: 174 GMSDVRMLH--CGIIK-EGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNS 230

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           +IGG+   S    AL LF++M ++       T  SVL AC  L  L+LG   H +I K  
Sbjct: 231 IIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD 290

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF 424
           Q L    L  +L+DMY KCG+++ A +VF+ M  + + +W+ MISGLA +G + +AL LF
Sbjct: 291 QDL---ILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLF 347

Query: 425 SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484
            RM   G +P+ IT VGVL AC+HAGLL+ G  YF +M + Y I P  +HYGCM+DLLG+
Sbjct: 348 ERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGK 407

Query: 485 AGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL 544
           AG  D+A  LL  ME +PDA  W +LLGACRV   + L E  AK ++ L+PE+ G Y LL
Sbjct: 408 AGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLL 467

Query: 545 SNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEML 604
           SN+YA + +WD V  IRTR+ D+G+KK PGCS IEV   +H F++GD  HPQ   + + L
Sbjct: 468 SNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKL 527

Query: 605 DEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNL 664
           +++   L   G+VP+T+ VL D++ E  E +L HHSEKLA+A+GL++      IRI KNL
Sbjct: 528 NQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNL 587

Query: 665 RVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           R+CG+CH   KL SK+  R I+ RD  R+HHF+DG CSC DYW
Sbjct: 588 RICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 116/374 (31%), Positives = 187/374 (50%), Gaps = 49/374 (13%)

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
           F  L+ A  +F+ + + N + W  +I  +S       A++  V M+     PN YT+  +
Sbjct: 109 FNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSV 168

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L+SC   + +S+ + +H  ++K GLESD FV ++LI+++A+ GE E A  VF++    DA
Sbjct: 169 LRSC---NGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDA 225

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           + + ++I G+A     D A +LF  M  +   F+  ++T+ +VL AC  +  LELG    
Sbjct: 226 IVWNSIIGGFAQNSRSDVALELFKRM--KRAGFIAEQATLTSVLRACTGLALLELG---- 279

Query: 257 SLIEGH----GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
             ++ H        +L + NAL+DMY KCG L  A  +F  +++RDVI+W+ MI G    
Sbjct: 280 --MQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQN 337

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
              +EAL LF +M  S  +PN +T + VL AC++ G L+ G W   Y  ++ +KL  +  
Sbjct: 338 GYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDG-W---YYFRSMKKLYGID- 392

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
                                          +  MI  L   GK D A+ L + M  E  
Sbjct: 393 --------------------------PVREHYGCMIDLLGKAGKLDDAVKLLNEMECE-- 424

Query: 433 QPDDITFVGVLSAC 446
            PD +T+  +L AC
Sbjct: 425 -PDAVTWRTLLGAC 437



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 184/367 (50%), Gaps = 39/367 (10%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           ++L  C  M +++ +H  IIK GL +  F  S LI++ A    G+   AL VF+ +   +
Sbjct: 167 SVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFA--KLGEPEDALSVFDEMVTGD 224

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
            ++WN+II G + +S   VA++ + RM  +GF+    T   +L++C  ++ +  G Q H 
Sbjct: 225 AIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHV 284

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
           H++K   + D  ++ +L++MY + G LE A  VFN+   RD ++++ +I+G A  GY  +
Sbjct: 285 HIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQE 342

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVTNA 273
           A +LF+ M  +     PN  T+V VL AC+H G LE G  +  S+ + +G+         
Sbjct: 343 ALKLFERM--KSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGC 400

Query: 274 LIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQM------- 325
           +ID+  K G L  A  L   +E + D ++W  ++G      +   A    +++       
Sbjct: 401 MIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPED 460

Query: 326 -----LQSNIEPNDVTFLSV--------------LPACAYLGALDLGKWIHAYI--DKNH 364
                L SNI  N   + SV               P C++   +++ K IHA+I  D +H
Sbjct: 461 AGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSW---IEVNKQIHAFIIGDNSH 517

Query: 365 QKLNNVS 371
            ++  VS
Sbjct: 518 PQIVEVS 524


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 262/719 (36%), Positives = 386/719 (53%), Gaps = 80/719 (11%)

Query: 64  ALSKLIEICAVSPFGDLSYALLVFETI--REPNQVIWNNIIRGHSLSSSPVVAIKFYVRM 121
           A + L+   AV+  G L  +   F+++     + V+ N +I   + +S    A+  +  +
Sbjct: 91  AATSLVSAYAVA--GRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSL 148

Query: 122 ILS--GFVPNTYTFPFILKSCAKIS--AISEGKQIHAHVLKLGL---------------- 161
           + S     P+ Y+F  +L +  ++   A+S   Q+H  V KLG                 
Sbjct: 149 LASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMK 208

Query: 162 ------------------ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALI 203
                             E D    T+++  + + G++ +AR  F +      V + A+I
Sbjct: 209 CDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMI 268

Query: 204 TGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV----CSLI 259
           +GY   G   +A +LF  M    +   P+E T  ++LSACA+ G    G  V      L 
Sbjct: 269 SGYVQSGMCAEAFELFRRMV--SKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQ 326

Query: 260 EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN---------------- 303
                 + L V NAL+ +YSK G +  A  +F+S+  +DV+SWN                
Sbjct: 327 PDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAA 386

Query: 304 ---------------VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
                          VM+ GY H    ++AL LF QM   +++P D T+   + AC  LG
Sbjct: 387 RIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELG 446

Query: 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI 408
           AL  GK +HA++ +   + +N S   +L+ MYA+CG +K A  VF  M      SWNAMI
Sbjct: 447 ALKHGKQLHAHLVQCGFEASN-SAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMI 505

Query: 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
           S L  HG   +AL LF +M+ +G+ PD I+F+ +L+ACNHAGL+D G QYF +M +D+ I
Sbjct: 506 SALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGI 565

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
           SP   HY  ++DLLGRAG   EA  L+KTM  +P  AIW ++L  CR++G +ELG   A 
Sbjct: 566 SPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAAD 625

Query: 529 HLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFL 588
            L ++ PE+ G Y+LLSN Y+ AGRW D A +R  + D+G+KK PGCS IEVG+ VH FL
Sbjct: 626 QLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNKVHVFL 685

Query: 589 VGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYG 648
           VGD  HP +  +Y  L+ + A + K G+VPDT   L DM    KE  L  HSE+LA+++G
Sbjct: 686 VGDTKHPDAHEVYRFLEMVGAKMRKLGYVPDTKFALQDMAPHEKEYVLFAHSERLAVSFG 745

Query: 649 LISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           L+    G T+ ++KNL++CG+CH+A   +S+   REI+ RD  RFHHFKDG CSC +YW
Sbjct: 746 LLKLPAGATVTVLKNLKICGDCHTAMMFMSRAVGREIVVRDVRRFHHFKDGECSCGNYW 804



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 182/428 (42%), Gaps = 78/428 (18%)

Query: 165 PFVHTSLINMYAQNGELESARLVFNKSSL--RDAVSYTALITGYASRGYLDDARQLFDEM 222
           P   TSL++ YA  G L  +   F+   +  RD V + A+I+ +A       A  +F  +
Sbjct: 89  PVAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSL 148

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGNWV---CSLIEGHGLGSNLHVTNALIDMYS 279
              +++  P++ +  ++LSA   M  L + +     C+ +   G G+ L V+NALI +Y 
Sbjct: 149 LASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCA-VHKLGAGAVLSVSNALIALYM 207

Query: 280 KC----------------------------------GDLVKARDLFESIEKRDVISWNVM 305
           KC                                  GD+  AR  FE I+    + WN M
Sbjct: 208 KCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAM 267

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK--- 362
           I GY  +    EA  LFR+M+   I P++ TF S+L ACA  G    GK +H    +   
Sbjct: 268 ISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQP 327

Query: 363 -------------------------------NHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
                                          +   L +V  W +++  Y + G +  A +
Sbjct: 328 DFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAAR 387

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           +F  M YK+  SW  M+SG    G A+ AL LF++M  E ++P D T+ G ++AC   G 
Sbjct: 388 IFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGA 447

Query: 452 LDIGRQYFNAMIQ-DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L  G+Q    ++Q  ++ S    +   ++ +  R G   +A  +   M    D+  W ++
Sbjct: 448 LKHGKQLHAHLVQCGFEASNSAGN--ALLTMYARCGAVKDARLVFLVMP-NVDSVSWNAM 504

Query: 511 LGACRVHG 518
           + A   HG
Sbjct: 505 ISALGQHG 512



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 159/347 (45%), Gaps = 16/347 (4%)

Query: 14  ILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICA 73
            +   P   P   L  N   + L SK   +    ++   +    + +    LS  IE   
Sbjct: 322 FIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIES-- 379

Query: 74  VSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTF 133
               G L  A  +F+ +   +++ W  ++ G+        A+K + +M      P  YT+
Sbjct: 380 ----GCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTY 435

Query: 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL 193
              + +C ++ A+  GKQ+HAH+++ G E+      +L+ MYA+ G ++ ARLVF     
Sbjct: 436 AGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPN 495

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG- 252
            D+VS+ A+I+     G+  +A +LFD+M    +   P+  + +T+L+AC H G ++ G 
Sbjct: 496 VDSVSWNAMISALGQHGHGREALELFDQMV--AQGIYPDRISFLTILTACNHAGLVDDGF 553

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVIS-WNVMIGGYTH 311
            +  S+    G+         LID+  + G + +ARDL +++      + W  ++ G   
Sbjct: 554 QYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRI 613

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
             D +       Q+ +  +  +D T+  +L +  Y  A   G+W+ A
Sbjct: 614 NGDMELGAYAADQLFKM-VPEHDGTY--ILLSNTYSAA---GRWVDA 654


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 260/707 (36%), Positives = 382/707 (54%), Gaps = 77/707 (10%)

Query: 71  ICAVSPFGDLSYALLVFETI--REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV- 127
           + A +  G L  A   F+ +     + V+ N ++   + +S    A+  +  ++ SG + 
Sbjct: 99  VAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLR 158

Query: 128 PNTYTFPFILKSCAKIS--AISEGKQIHAHVLKLGL------------------------ 161
           P+ Y+F  ++ +  ++   A     Q+H  VLK G                         
Sbjct: 159 PDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASW 218

Query: 162 ----------ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
                     + D    T+++  Y + G++ +AR VF +   +  V + A+I+GY   G 
Sbjct: 219 DARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGM 278

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV----CSLIEGHGLGSN 267
             DA +LF  M    E    +E T  +VLSACA+ G    G  V      L       + 
Sbjct: 279 CADAFELFRRMV--SEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAA 336

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN------------------------ 303
           L V NAL+ +YSK G +V A+ +F+++  +DV+SWN                        
Sbjct: 337 LPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPY 396

Query: 304 -------VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
                  VM+ GY H    ++AL LF QM   +++P D T+   + AC  LGAL  G+ +
Sbjct: 397 KNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQL 456

Query: 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGK 416
           HA++ +   + +N S   +L+ MYAKCG +  A  VF  M      SWNAMIS L  HG 
Sbjct: 457 HAHLVQCGFEASN-SAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGH 515

Query: 417 ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG 476
             +AL LF +M+ EG+ PD I+F+ +L+ACNHAGL+D G  YF +M +D+ ISP   HY 
Sbjct: 516 GREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYA 575

Query: 477 CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536
            ++DLLGR+G   EA  L+KTM  +P  +IW ++L  CR +G +E G   A  L  + P+
Sbjct: 576 RLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQ 635

Query: 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQ 596
           + G Y+LLSN Y+ AGRW D A +R  + D+G+KK PGCS IEVGS +H FLVGD  HP+
Sbjct: 636 HDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPE 695

Query: 597 SKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGT 656
           ++ +Y+ L+ I A + K G+VPDT  VL+DM+   KE  L  HSEKLA+ +GL+   PG 
Sbjct: 696 AQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGA 755

Query: 657 TIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSC 703
           T+ ++KNLR+CG+CH+A   +SK   REI+ RD  RFHHFKDG CSC
Sbjct: 756 TVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSC 802



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 104/428 (24%), Positives = 180/428 (42%), Gaps = 79/428 (18%)

Query: 165 PFVHTSLINMYAQNGELESARLVFNK--SSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
           P   TSL+   A  G L  A   F+    + RD V + A+++ +A       A  +F  +
Sbjct: 92  PSPATSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHAL 151

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGNWV---CSLIEGHGLGSNLHVTNALIDMYS 279
            +   +  P++ +   ++SA   M +L   +     CS+++  G  + L V+NALI +Y 
Sbjct: 152 -LGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKS-GAAAVLSVSNALIALYM 209

Query: 280 KCGDLVK---ARDLFESIEKRDVISWNVMIGGYTHTSDYK-------------------- 316
           KC        AR + + +  +D ++W  M+ GY    D                      
Sbjct: 210 KCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAM 269

Query: 317 -----------EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK--- 362
                      +A  LFR+M+   +  ++ TF SVL ACA  G    GK +H  I +   
Sbjct: 270 ISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQP 329

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA---------------- 406
           N      + +  +L+ +Y+K G I  A+++FD M  K + SWN                 
Sbjct: 330 NFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVE 389

Query: 407 ---------------MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
                          M+SG    G ++ AL LF++M  E ++P D T+ G ++AC   G 
Sbjct: 390 VFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGA 449

Query: 452 LDIGRQYFNAMIQ-DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L  GRQ    ++Q  ++ S    +   ++ +  + G  ++A  +   M    D+  W ++
Sbjct: 450 LKHGRQLHAHLVQCGFEASNSAGN--ALLTMYAKCGAVNDARLVFLVMP-NLDSVSWNAM 506

Query: 511 LGACRVHG 518
           + A   HG
Sbjct: 507 ISALGQHG 514



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 164/351 (46%), Gaps = 24/351 (6%)

Query: 14  ILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICA 73
           I+   P+  P   L  N   + L SK   +   K++   +    + +    LS  I+   
Sbjct: 324 IIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDS-- 381

Query: 74  VSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTF 133
               G L  A+ VF+ +   N + W  ++ G+        A+K + +M      P  YT+
Sbjct: 382 ----GCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTY 437

Query: 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL 193
              + +C ++ A+  G+Q+HAH+++ G E+      +L+ MYA+ G +  ARLVF     
Sbjct: 438 AGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPN 497

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG- 252
            D+VS+ A+I+     G+  +A +LFD+M    E   P+  + +T+L+AC H G ++ G 
Sbjct: 498 LDSVSWNAMISALGQHGHGREALELFDQMV--AEGIDPDRISFLTILTACNHAGLVDEGF 555

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVIS-WNVMIGGYTH 311
           ++  S+    G+         LID+  + G + +ARDL +++      S W  ++ G   
Sbjct: 556 HYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRT 615

Query: 312 TSDYK----EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
             D +     A  LFR + Q     +D T+  +L +  Y  A   G+W+ A
Sbjct: 616 NGDMEFGAYAADQLFRMIPQ-----HDGTY--ILLSNTYSAA---GRWVDA 656


>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
 gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/622 (39%), Positives = 369/622 (59%), Gaps = 50/622 (8%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLKLGLES---DPFVHTSLINMYAQNGELESARLVFN 189
           F  +L+SCA+ S++S GK++HA +L  GL S   + F+  +L ++YA  G   SAR +F 
Sbjct: 18  FRSLLRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYASCGVTSSARHLFY 77

Query: 190 K--SSLRDAVSYTALITGYASRGYL-DDARQLFDEMPIREENFVPNESTVVTVLSACAHM 246
           +   S +D   +T L+T     G    +    F EM  R+E  V ++  +++V   C  +
Sbjct: 78  QIPRSHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEM--RKEGVVLDDVAMISVFVLCTRV 135

Query: 247 GSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN--- 303
             L +G      +   GLG  + V NA+++MY KCG + + R +F  + +R+V+SW+   
Sbjct: 136 EDLGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNERNVVSWSTLL 195

Query: 304 ----------------------------VMIGGYTHTSDYKEALMLFRQM-LQSNIEPND 334
                                       +MI GY      +E  +L  +M L+  +  N 
Sbjct: 196 EGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRLGLNF 255

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
           VT  S+L ACA  G + +G+W+H Y  K   +  ++ + T+L+DMYAKCG I  A +VF 
Sbjct: 256 VTLSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVDMYAKCGPIDMAFKVFK 315

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
            +  + + +WNAM+ GLAMHG+    L +F +MI E  +PDD+TF+ VLSAC+H+GL+D 
Sbjct: 316 YLPKRNVVAWNAMLGGLAMHGRGKFVLDIFPKMIEEA-KPDDLTFMAVLSACSHSGLVDQ 374

Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGAC 514
           G  YF ++  +Y  +PK++HY CMVD+LGRAG  +EA  L+K M M P+  +  SLLG+C
Sbjct: 375 GYHYFRSLESEYGTTPKIEHYACMVDILGRAGHLEEAVMLIKKMPMCPNEVVLGSLLGSC 434

Query: 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPG 574
             HG+L+LGE + + L++++  N   +VLLSNMY   G+ D   ++R  L  KG++KVPG
Sbjct: 435 NAHGKLQLGERILQELIQMDGHNTEYHVLLSNMYVLEGKQDKANSLRQILKSKGIRKVPG 494

Query: 575 CSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLY--------- 625
            SSI VG  +H+F  GDK HP +K IY  L+ +   L  +G+VP+T+  ++         
Sbjct: 495 VSSIYVGGNIHQFSAGDKSHPLTKEIYHALNNMIQRLRLAGYVPNTTNQVFPGSDGREGS 554

Query: 626 DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREI 685
             + E KE AL  HSEKLA+ +G ISTKPG  + I KNLR+C +CHSA K++SKI+NREI
Sbjct: 555 SEEMEEKEQALFLHSEKLAVCFGHISTKPGAPLYIFKNLRICQDCHSAIKIVSKIYNREI 614

Query: 686 IARDRNRFHHFKDGNCSCNDYW 707
           + RDRNRFH FK G+CSC+DYW
Sbjct: 615 VIRDRNRFHCFKHGSCSCSDYW 636



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 120/491 (24%), Positives = 219/491 (44%), Gaps = 97/491 (19%)

Query: 25  YKLLQNQPSL--ALLSKC---TNMQNIKQVHSQIIKTGLHNTQ------FALSKLIEICA 73
           +  LQ+ P+   +LL  C   +++   K++H+ I+ +GL ++        AL  L   C 
Sbjct: 8   FTTLQSLPARFRSLLRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYASCG 67

Query: 74  VSPFGDLSYALLVFETIREPNQVI-WNNIIRGHSL---SSSPVVAIKFYVRMILSGFVPN 129
           V+     S   L ++  R    V  W  ++   SL    + P     F+  M   G V +
Sbjct: 68  VTS----SARHLFYQIPRSHKDVTDWTTLLT--SLVQHGTKPSEGFFFFKEMRKEGVVLD 121

Query: 130 TYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN 189
                 +   C ++  +  G+Q    ++K+GL     V  +++NMY + G +E  R VF 
Sbjct: 122 DVAMISVFVLCTRVEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFC 181

Query: 190 KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREE---------------------- 227
           + + R+ VS++ L+ G      +++ R +FDEMP R E                      
Sbjct: 182 EMNERNVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLL 241

Query: 228 ------------NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH--VTNA 273
                       NFV    T+ ++LSACA  G + +G WV  +    G+G  +H  V  A
Sbjct: 242 LDEMVLRFRLGLNFV----TLSSILSACAQSGDVLMGRWV-HVYALKGMGREMHIMVGTA 296

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           L+DMY+KCG +  A  +F+ + KR+V++WN M+GG       K  L +F +M++   +P+
Sbjct: 297 LVDMYAKCGPIDMAFKVFKYLPKRNVVAWNAMLGGLAMHGRGKFVLDIFPKMIE-EAKPD 355

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
           D+TF++VL AC++ G +D G      ++  +     +  +  ++D+  + G++       
Sbjct: 356 DLTFMAVLSACSHSGLVDQGYHYFRSLESEYGTTPKIEHYACMVDILGRAGHL------- 408

Query: 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLD 453
                                   ++A+ L  +M    + P+++    +L +CN  G L 
Sbjct: 409 ------------------------EEAVMLIKKM---PMCPNEVVLGSLLGSCNAHGKLQ 441

Query: 454 IGRQYFNAMIQ 464
           +G +    +IQ
Sbjct: 442 LGERILQELIQ 452


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/636 (38%), Positives = 376/636 (59%), Gaps = 9/636 (1%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G L  A  VF+ + + N V W  ++ GH  + +P+ ++  + +M LSG  PN +TF   L
Sbjct: 21  GRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSGVKPNDFTFSTNL 80

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
           K+C  ++ +  G+QIH   +K G +    V  S+I+MY++ G +  A  +F    +R+ +
Sbjct: 81  KACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRNLI 140

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           S+ A+I GY   G+ + A  LF +M  +E     +E T  + L AC+ +G+++ GN + +
Sbjct: 141 SWNAMIAGYTVAGFCEKALVLFQKM--QEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHA 198

Query: 258 -LIEGHGLGS-NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
            LI G  L S N  V  ALID+Y KCG L  AR +F  IE++ VISW  +I GY    + 
Sbjct: 199 FLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNL 258

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
            E++ LFRQ+ +S+I+ +     S++   A    +  GK +HA+  K    ++ +S+  S
Sbjct: 259 AESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVD-ISVCNS 317

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           ++DMY KCG I  AE++F  M  + + SW  MI+G   HG   +A+ LF  M  +  +PD
Sbjct: 318 ILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPD 377

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
           D+T++ VL  C+H+GL++ G++YF+ +   + I  +++HY CMVDLLGRAG   EA+ L+
Sbjct: 378 DVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLV 437

Query: 496 KTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555
            +M ++ +  IW +LL ACRVHG LELG+ V   LL L+ ENP  YV++SN+YA AG W 
Sbjct: 438 DSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSENPVNYVMMSNIYADAGYWK 497

Query: 556 DVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALL-EKS 614
           +   IR  +  K +KK  G S +E+   VH F  GD  HP ++ I+E+L E++  + E+ 
Sbjct: 498 ECERIRELVKSKKLKKEAGRSWVEIDKEVHFFYGGDDTHPLTEKIHEILKEMERRMKEEL 557

Query: 615 GFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLIS---TKPGTTIRIVKNLRVCGNCH 671
           G+V      L+D++EE K   L  HSEKLAI   L+     +    IR+ KNLRVCG+CH
Sbjct: 558 GYVYGVKYALHDVEEESKMDNLRVHSEKLAIGLALVCGGLEEGRKVIRVFKNLRVCGDCH 617

Query: 672 SATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
              K +SKI     + RD NRFH F+DG CSC DYW
Sbjct: 618 EFIKGLSKILRVVFVVRDANRFHRFEDGLCSCRDYW 653



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 197/372 (52%), Gaps = 7/372 (1%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +Q+H   +KTG        + +I++   S  G ++ A  +FE +   N + WN +I G++
Sbjct: 93  RQIHDICVKTGFDMVNVVGNSIIDM--YSKCGRINEAACMFEVMPVRNLISWNAMIAGYT 150

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGL--ESD 164
           ++     A+  + +M   G   + +TF   LK+C+ + AI EG QIHA ++  G     +
Sbjct: 151 VAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVN 210

Query: 165 PFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPI 224
             V  +LI++Y + G+L  AR VF+    +  +S+TALI GYA  G L ++ +LF ++  
Sbjct: 211 TAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQL-- 268

Query: 225 REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
           RE +   +   + +++   A    ++ G  + +       G ++ V N+++DMY KCG +
Sbjct: 269 RESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMI 328

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
            +A  LF  +  R+VISW VMI GY      KEA+ LF +M   + EP+DVT+L+VL  C
Sbjct: 329 NEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGC 388

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT-LAS 403
           ++ G ++ G+   + +   H     V  +  ++D+  + G +K A+ + D M  +  +  
Sbjct: 389 SHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGI 448

Query: 404 WNAMISGLAMHG 415
           W  ++S   +HG
Sbjct: 449 WQTLLSACRVHG 460



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 117/383 (30%), Positives = 192/383 (50%), Gaps = 12/383 (3%)

Query: 159 LGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQL 218
           +G   D  +   LI MY + G L  A  VF++   R+ VS+TAL+ G+   G   ++  L
Sbjct: 1   MGFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLL 60

Query: 219 FDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMY 278
           F +M +      PN+ T  T L AC  +  L++G  +  +    G      V N++IDMY
Sbjct: 61  FSKMGL--SGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMY 118

Query: 279 SKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
           SKCG + +A  +FE +  R++ISWN MI GYT     ++AL+LF++M +     ++ TF 
Sbjct: 119 SKCGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFT 178

Query: 339 SVLPACAYLGALDLGKWIHAY-IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG 397
           S L AC+ LGA+  G  IHA+ I        N ++  +LID+Y KCG +  A +VF  + 
Sbjct: 179 STLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIE 238

Query: 398 YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
            K + SW A+I G A  G   +++ LF ++    +Q D      ++       L+  G+Q
Sbjct: 239 EKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQ 298

Query: 458 YFNAMIQDYKISPKLQHYGC--MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACR 515
                I   K+   +    C  ++D+  + G+ +EAE L   M  + +   WT ++    
Sbjct: 299 MHAFAI---KVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPAR-NVISWTVMITGYG 354

Query: 516 VHGRLELGESVAKHLLELEPENP 538
            HG   LG+   +   E++ ++ 
Sbjct: 355 KHG---LGKEAIRLFDEMQLDST 374



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/300 (34%), Positives = 156/300 (52%), Gaps = 8/300 (2%)

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
           G G +L ++N LI MY KCG L  A D+F+ + KR+V+SW  ++ G+    +  E+L+LF
Sbjct: 2   GFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLF 61

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
            +M  S ++PND TF + L AC  L  LD+G+ IH    K    + NV +  S+IDMY+K
Sbjct: 62  SKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNV-VGNSIIDMYSK 120

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
           CG I  A  +F+ M  + L SWNAMI+G  + G  +KAL LF +M   G   D+ TF   
Sbjct: 121 CGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTST 180

Query: 443 LSACNHAGLLDIGRQYFNAMIQ-DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK 501
           L AC+  G +  G Q    +I   +  S      G ++DL  + G    A  +   +E K
Sbjct: 181 LKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEK 240

Query: 502 PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIR 561
              + WT+L+      G L     + + L E   +  G ++L S M    G + D A ++
Sbjct: 241 HVIS-WTALILGYAQEGNLAESMELFRQLRESSIQVDG-FILSSMM----GVFADFALVQ 294


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 262/698 (37%), Positives = 400/698 (57%), Gaps = 45/698 (6%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSL 107
           Q+H  I KT   +     + LI +   S     + A  VF+ I   N + WN+II  +S 
Sbjct: 223 QIHGLISKTRYGSDVVVCNVLISMYG-SCLDSANDARSVFDGIGIRNSISWNSIISVYSR 281

Query: 108 SSSPVVAIKFYVRMILSG----FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLES 163
               V A   +  M   G    F PN     F +    +     +G+++HAHV++ GL  
Sbjct: 282 RGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLEEGR----RKGREVHAHVIRTGLND 337

Query: 164 DPF-VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
           +   +   L+NMYA++G +  A  VF     +D+VS+ +LI+G       +DA ++F  M
Sbjct: 338 NKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLM 397

Query: 223 PIREE------------------------------NFVPNESTVVTVLSACAHMGSLELG 252
           P  ++                               +  +  T + +LSA + +   E+ 
Sbjct: 398 PEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVS 457

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI-EKRDVISWNVMIGGYTH 311
           + + +L+  + L  +  + NAL+  Y KCG++ +   +F  + E RD +SWN MI GY H
Sbjct: 458 HQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIH 517

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
                +A+ L   M+Q     +  TF ++L ACA +  L+ G  +HA   +   + ++V 
Sbjct: 518 NELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRACLE-SDVV 576

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
           + ++L+DMY+KCG I  A + F+ M  + + SWN+MISG A HG  +KAL LF+RM+ +G
Sbjct: 577 VGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDG 636

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
             PD +TFVGVLSAC+H G ++ G ++F +M + Y++SP+++H+ CMVDLLGRAG  DE 
Sbjct: 637 QPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEV 696

Query: 492 EALLKTMEMKPDAAIWTSLLGA-CRVHGR-LELGESVAKHLLELEPENPGAYVLLSNMYA 549
              + +M MKP+  IW ++LGA CR +GR  ELG   A+ LLELEP+N   YVLL+NMYA
Sbjct: 697 GDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYA 756

Query: 550 GAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDA 609
              +W+DVA  RT + +  +KK  GCS + +   VH F+ GDK+HP+   IY+ L E++ 
Sbjct: 757 SGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDLIYDKLRELNR 816

Query: 610 LLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGN 669
            +  +G++P T   L+D++ E KE  LS+HSEK+A+A+ +++ +    IRI+KNLRVCG+
Sbjct: 817 KMRDAGYIPQTKYALFDLELENKEELLSYHSEKIAVAF-VLTRQSALPIRIMKNLRVCGD 875

Query: 670 CHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           CHSA   ISKI  R+I+ RD NRFHHF+DG CSC DYW
Sbjct: 876 CHSAFGYISKIVGRQIVLRDSNRFHHFEDGKCSCGDYW 913



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 144/545 (26%), Positives = 244/545 (44%), Gaps = 61/545 (11%)

Query: 44  QNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIR 103
           +  +++H Q IK G     F  + LI I      GDL  A  +F+ +   N V W  +I 
Sbjct: 116 EEARELHLQSIKYGFVGNLFLSNTLINI--YVRIGDLGSAQKLFDEMSNRNLVTWACLIS 173

Query: 104 GHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKI--SAISEGKQIHAHVLKLGL 161
           G++ +  P  A   +  M+ +GF+PN Y F   L++C +   S    G QIH  + K   
Sbjct: 174 GYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRY 233

Query: 162 ESDPFVHTSLINMYAQN-GELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD 220
            SD  V   LI+MY         AR VF+   +R+++S+ ++I+ Y+ RG    A  LF 
Sbjct: 234 GSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFS 293

Query: 221 EMPIREE----NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH----GLGSN-LHVT 271
            M  ++E    +F PN+        A +    LE G      +  H    GL  N + + 
Sbjct: 294 SM--QKEGLGFSFKPND--------AFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIG 343

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGG-------------------YTHT 312
           N L++MY+K G +  A  +FE + ++D +SWN +I G                   Y   
Sbjct: 344 NGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQV 403

Query: 313 S-------------DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
           S                +A+  F QM++     + VTF+++L A + L   ++   IHA 
Sbjct: 404 SWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHAL 463

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG-YKTLASWNAMISGLAMHGKAD 418
           + K +   ++ ++  +L+  Y KCG +   E++F  M   +   SWN+MISG   +    
Sbjct: 464 VLK-YCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLH 522

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478
           KA+ L   M+ +G + D  TF  +LSAC     L+ G +     I+   +   +     +
Sbjct: 523 KAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRAC-LESDVVVGSAL 581

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELG-ESVAKHLLELEPEN 537
           VD+  + G  D A    + M ++ +   W S++     HG  E   +   + +L+ +P +
Sbjct: 582 VDMYSKCGRIDYASRFFELMPLR-NVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPD 640

Query: 538 PGAYV 542
              +V
Sbjct: 641 HVTFV 645


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 261/691 (37%), Positives = 388/691 (56%), Gaps = 18/691 (2%)

Query: 24  PYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNT---QFALSKLIEICAVSPFGDL 80
           P  LL +    A+ + C+ +   + +H+ II+T  H T    F  + L+ +   S    L
Sbjct: 5   PQNLLGSLLESAVSTHCSILG--RTIHAHIIRT--HVTPLPSFLSNHLVNM--YSKLDLL 58

Query: 81  SYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSC 140
           + A  V         V W ++I G   +   + A+  +  M      PN +TFP + K+ 
Sbjct: 59  NSAQHVLSLTHLRTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKAS 118

Query: 141 AKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYT 200
           A +     GKQIH   LK G+  D FV  S  +MY + G    A  +F++   R+  ++ 
Sbjct: 119 AFVQIPMTGKQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWN 178

Query: 201 ALITGYASRGYLDDARQLFDE-MPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
           A I+         DA   F E + +  E   PN  T    L+AC  M  L LG  + + I
Sbjct: 179 AYISNAVQDRRSLDAIVAFKEFLCVHGE---PNSITFCAFLNACVDMVRLNLGRQLHAFI 235

Query: 260 EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI-EKRDVISWNVMIGGYTHTSDYKEA 318
              G   ++ V N LID Y KCGD+V A  +F  I  +++V+SW  M+       + + A
Sbjct: 236 VRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERA 295

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
            M+F Q  +  +EP D    SVL ACA LG L+LG+ +HA   K   + +N+ + ++L+D
Sbjct: 296 CMVFLQA-RKEVEPTDFMISSVLSACAELGGLELGRSVHALAVKACVE-DNIFVGSALVD 353

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMI--GEGLQPDD 436
           MY KCG+I+ AEQVF  +  + L +WNAMI G A  G  D AL LF  M     G++P  
Sbjct: 354 MYGKCGSIENAEQVFSELPERNLVTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSY 413

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
           +T + +LS C+  G ++ G Q F +M  +Y I P  +H+ C+VDLLGR+GL D A   ++
Sbjct: 414 VTLISILSVCSRVGAVERGIQIFESMRLNYGIEPGAEHFACVVDLLGRSGLVDRAYEFIQ 473

Query: 497 TMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
            M ++P  ++W +LLGACR+HG+ ELG+  A+ L EL+  + G +V+LSNM A AGRW++
Sbjct: 474 NMAIQPTISVWGALLGACRMHGKTELGKIAAEKLFELDHVDSGNHVVLSNMLASAGRWEE 533

Query: 557 VATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGF 616
              +R  + D G+KK  G S I V + +H F   D  H ++  I  ML ++   ++++G+
Sbjct: 534 ATVVRKEMKDIGIKKNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQAMLGKLRGGMKEAGY 593

Query: 617 VPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKL 676
           VPDT+  L+D+++E K   + +HSEK+A+A+GLI+   G  IRI KNLR+CG+CHSA K 
Sbjct: 594 VPDTNLSLFDLEDEEKASEVWYHSEKIALAFGLIALPQGVPIRITKNLRICGDCHSAIKF 653

Query: 677 ISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           IS+I  REII RD +RFH FKDG CSC DYW
Sbjct: 654 ISRIVGREIIVRDNHRFHRFKDGCCSCKDYW 684


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 258/663 (38%), Positives = 392/663 (59%), Gaps = 11/663 (1%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           ++VH+Q +K G  +T F  + LI +   S  G +  A  VF  +   + V WN ++ G  
Sbjct: 221 RRVHAQSVKFGCRSTVFVCNSLINM--YSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLL 278

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
           L+   + A++ +     S    +  T+  ++K CA +  ++  +Q+H+ VLK G  SD  
Sbjct: 279 LNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGN 338

Query: 167 VHTSLINMYAQNGELESARLVFN-KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           V T++++ Y++ GEL+ A  +F      ++ VS+TA+I G      +  A  LF  M  R
Sbjct: 339 VMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRM--R 396

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
           E+N  PNE T  TVL+A   +   ++   +      H       V  AL+  YSK G+  
Sbjct: 397 EDNVKPNEFTYSTVLTASIPILLPQIHAQIIKTNYQHAPS----VGTALLASYSKLGNTE 452

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
           +A  +F+ I+ +DV++W+ M+  Y+   D   A  +F +M    ++PN+ T  S + ACA
Sbjct: 453 EALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACA 512

Query: 346 YLGA-LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
              A +D G+  HA I   ++  + + + ++L+ MYA+ G+I +A  VF+    + L SW
Sbjct: 513 SPTAGIDQGRQFHA-ISIKYRYQDAICVGSALVTMYARKGSIDSARIVFERQTDRDLVSW 571

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
           N+MISG A HG + +AL  F +M   G++ D  TF+ V+  C HAGL+  G+QYF++M+ 
Sbjct: 572 NSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHAGLVKEGQQYFDSMVM 631

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGE 524
           D+ ISP ++HY CMVDL  RAG  DE   L++ M     A +W +LLGACRVH  +ELG+
Sbjct: 632 DHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRTLLGACRVHKNVELGK 691

Query: 525 SVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVV 584
             A+ LL LEP++   YVLLSN+YA AGRW +   +R  ++ K +KK  GCS I++ + V
Sbjct: 692 LAAQKLLLLEPDDSATYVLLSNIYAAAGRWKERDEVRKLMDSKKVKKEAGCSWIQIKNKV 751

Query: 585 HEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLA 644
           H F+  DK HP S+ IY  L  +   L++ G+ P+TS VL+D+ EE KE  L  HSE+LA
Sbjct: 752 HSFIACDKSHPLSEQIYAKLKAMTTRLKQEGYCPNTSVVLHDIAEEQKETMLVMHSERLA 811

Query: 645 IAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCN 704
           +A+GLI+T P T ++IVKNLRVCG+CH   K++S I +REII RD +RFHHF  G CSC 
Sbjct: 812 LAFGLIATPPRTPLQIVKNLRVCGDCHMVMKMVSLIEDREIIMRDCSRFHHFNAGACSCG 871

Query: 705 DYW 707
           D+W
Sbjct: 872 DFW 874



 Score =  216 bits (550), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 144/476 (30%), Positives = 245/476 (51%), Gaps = 16/476 (3%)

Query: 47  KQVHSQIIKTGLHNTQFAL-SKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           +Q+H   +K G    +  + + L+++      G +    +VFE + + N V W +++ G+
Sbjct: 119 EQLHCLCVKCGFDRAEVGVGTALVDM--YMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGY 176

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
               +    +  + RM   G  PN +TF  +L + A   A+  G+++HA  +K G  S  
Sbjct: 177 VQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTV 236

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           FV  SLINMY++ G +E A+ VF +   RD VS+  L+ G     +  +A QLF +   R
Sbjct: 237 FVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDS--R 294

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
                 ++ST  TV+  CA++  L L   + S +  HG  S+ +V  A++D YSKCG+L 
Sbjct: 295 ASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELD 354

Query: 286 KARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
            A ++F  +   ++V+SW  MIGG    +D   A  LF +M + N++PN+ T+ +VL A 
Sbjct: 355 DAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTAS 414

Query: 345 AYLGALDLGKWIHAYIDK-NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
             +    L   IHA I K N+Q   +V   T+L+  Y+K GN + A  +F  + +K + +
Sbjct: 415 IPI----LLPQIHAQIIKTNYQHAPSVG--TALLASYSKLGNTEEALSIFKMIDHKDVVA 468

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC-NHAGLLDIGRQYFNAM 462
           W+AM+S  +  G  D A ++F +M  +G++P++ T    + AC +    +D GRQ F+A+
Sbjct: 469 WSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQ-FHAI 527

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
              Y+    +     +V +  R G  D A  + +  +   D   W S++     HG
Sbjct: 528 SIKYRYQDAICVGSALVTMYARKGSIDSARIVFER-QTDRDLVSWNSMISGYAQHG 582



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 121/378 (32%), Positives = 201/378 (53%), Gaps = 11/378 (2%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLE-SDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
           +LK C  I     G+Q+H   +K G + ++  V T+L++MY + G +E  R+VF     R
Sbjct: 105 VLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKR 164

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
           + V++T+L+TGY       D   LF  M  R E   PN  T  +VLSA A  G+++LG  
Sbjct: 165 NVVTWTSLLTGYVQGRACSDVMALFFRM--RAEGVWPNPFTFTSVLSAVASQGAVDLGRR 222

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           V +     G  S + V N+LI+MYSKCG + +A+ +F  +E RD++SWN ++ G      
Sbjct: 223 VHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEH 282

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
             EAL LF     S  + +  T+ +V+  CA L  L L + +H+ + K H   ++ ++ T
Sbjct: 283 QLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLK-HGFHSDGNVMT 341

Query: 375 SLIDMYAKCGNIKAAEQVFDGM-GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
           +++D Y+KCG +  A  +F  M G + + SW AMI G   +     A +LFSRM  + ++
Sbjct: 342 AIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVK 401

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
           P++ T+  VL+A     L  I  Q       +Y+ +P +     ++    + G  +EA +
Sbjct: 402 PNEFTYSTVLTASIPILLPQIHAQIIKT---NYQHAPSVG--TALLASYSKLGNTEEALS 456

Query: 494 LLKTMEMKPDAAIWTSLL 511
           + K ++ K D   W+++L
Sbjct: 457 IFKMIDHK-DVVAWSAML 473



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 138/266 (51%), Gaps = 7/266 (2%)

Query: 46  IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           + Q+H+QIIKT   +     + L+   + S  G+   AL +F+ I   + V W+ ++  +
Sbjct: 419 LPQIHAQIIKTNYQHAPSVGTALLA--SYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCY 476

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA-ISEGKQIHAHVLKLGLESD 164
           S +     A   +++M + G  PN +T    + +CA  +A I +G+Q HA  +K   +  
Sbjct: 477 SQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDA 536

Query: 165 PFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPI 224
             V ++L+ MYA+ G ++SAR+VF + + RD VS+ ++I+GYA  GY  +A   F +M  
Sbjct: 537 ICVGSALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQM-- 594

Query: 225 REENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
                  + +T + V+  C H G ++ G  +  S++  H +   +   + ++D+YS+ G 
Sbjct: 595 ETVGIEMDGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGK 654

Query: 284 LVKARDLFESIE-KRDVISWNVMIGG 308
           L +  +L E +      + W  ++G 
Sbjct: 655 LDETMNLIEGMPFPAGAMVWRTLLGA 680


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/666 (37%), Positives = 392/666 (58%), Gaps = 10/666 (1%)

Query: 47  KQVHSQII---KTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIR 103
           K +H+Q++   +T   +    ++ LI +   S  G    A  +F+ + + N V W+ ++ 
Sbjct: 43  KTIHAQLVVRNQTSKDSDITQINSLINL--YSKCGQSKCARKLFDRMLQRNVVSWSALMM 100

Query: 104 GHSLSSSPVVAIKFYVRMI-LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE 162
           G+      +  +  +  ++ L    PN Y F  +L  CA    + EGKQ H ++LK GL 
Sbjct: 101 GYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKSGLL 160

Query: 163 SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
              +V  +LI+MY++   ++SA  + +     D  SY ++++     G   +A Q+   M
Sbjct: 161 LHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRM 220

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
              +E  + +  T V+VL  CA +  L+LG  + + +   GL  ++ V++ LID Y KCG
Sbjct: 221 V--DECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCG 278

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
           +++ AR  F+ +  R+V++W  ++  Y     ++E L LF +M   +  PN+ TF  +L 
Sbjct: 279 EVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLN 338

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           ACA L AL  G  +H  I  +  K N++ +  +LI+MY+K GNI ++  VF  M  + + 
Sbjct: 339 ACASLVALAYGDLLHGRIVMSGFK-NHLIVGNALINMYSKSGNIDSSYNVFSNMMNRDVI 397

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           +WNAMI G + HG   +AL +F  M+  G  P+ +TF+GVLSAC H  L+  G  YF+ +
Sbjct: 398 TWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLALVQEGFYYFDQI 457

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPDAAIWTSLLGACRVHGRLE 521
           ++ + + P L+HY CMV LLGRAGL DEAE  +KT  ++K D   W +LL AC +H    
Sbjct: 458 MKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLLNACHIHRNYN 517

Query: 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
           LG+ + + +++++P + G Y LLSNM+A A +WD V  IR  + ++ +KK PG S +++ 
Sbjct: 518 LGKQITETVIQMDPHDVGTYTLLSNMHAKARKWDGVVKIRKLMKERNIKKEPGASWLDIR 577

Query: 582 SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
           +  H F+     HP+S  I+E + ++ A+++  G+ PD   VL+D+++E KEG LSHHSE
Sbjct: 578 NNTHVFVSEGSNHPESTQIFEKVQQLLAMIKPLGYAPDVGVVLHDVEDEQKEGYLSHHSE 637

Query: 642 KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
           KLA+AYGL+   P   IRI+KNLR+C +CH A KLISK  NR II RD NRFHHF++G C
Sbjct: 638 KLALAYGLMKIPPPGPIRIIKNLRMCDDCHIAVKLISKATNRLIIVRDANRFHHFREGLC 697

Query: 702 SCNDYW 707
           +CND+W
Sbjct: 698 TCNDHW 703



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 156/311 (50%), Gaps = 9/311 (2%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L L ++  ++Q   Q+H+Q++KTGL    F  S LI+       G++  A   F+ +R+ 
Sbjct: 236 LGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLID--TYGKCGEVLNARKQFDGLRDR 293

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           N V W  ++  +  +      +  + +M L    PN +TF  +L +CA + A++ G  +H
Sbjct: 294 NVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLH 353

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
             ++  G ++   V  +LINMY+++G ++S+  VF+    RD +++ A+I GY+  G   
Sbjct: 354 GRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGK 413

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC-SLIEGHGLGSNLHVTN 272
            A  +F +M    E   PN  T + VLSAC H+  ++ G +    +++   +   L    
Sbjct: 414 QALLVFQDMMSAGE--CPNYVTFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGLEHYT 471

Query: 273 ALIDMYSKCGDLVKARDLFESIE--KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            ++ +  + G L +A +  ++    K DV++W  ++       +Y     +   ++Q  +
Sbjct: 472 CMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLLNACHIHRNYNLGKQITETVIQ--M 529

Query: 331 EPNDVTFLSVL 341
           +P+DV   ++L
Sbjct: 530 DPHDVGTYTLL 540


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/616 (39%), Positives = 370/616 (60%), Gaps = 20/616 (3%)

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
           P+ V + +++RG+        AI+ + +M       N  ++  +L        ++E +++
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFQQMPER----NHVSYTVLLGGLLDAGRVNEARRL 165

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
              +     + D    T++++ Y Q G +  AR +F++   R+ VS+TA+I+GYA  G +
Sbjct: 166 FDEMP----DRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEV 221

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           + AR+LF+ MP R      NE +   +L      G +E    + + +  H + +     N
Sbjct: 222 NLARKLFEVMPER------NEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAA----CN 271

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           A++  + + G +  A+ +FE + +RD  +W+ MI  Y       EAL  FR+ML   + P
Sbjct: 272 AMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRP 331

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N  + +S+L  CA L  LD G+ +HA + +    ++  ++ ++LI MY KCGN+  A++V
Sbjct: 332 NYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAV-SALITMYIKCGNLDKAKRV 390

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F     K +  WN+MI+G A HG  ++AL +F  M   G+ PD IT++G L+AC++ G +
Sbjct: 391 FHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKV 450

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
             GR+ FN+M  +  I P  +HY CMVDLLGR+GL +EA  L+K M ++PDA IW +L+G
Sbjct: 451 KEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMG 510

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           ACR+H   E+ E  AK LLELEP N G YVLLS++Y   GRW+D + +R  ++ + + K 
Sbjct: 511 ACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKS 570

Query: 573 PGCSSIEVGSVVHEFLVGDKV-HPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
           PGCS IE    VH F  GD + HP+   I  +L+++D LL +SG+  D S VL+D+DEE 
Sbjct: 571 PGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQ 630

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           K  +L +HSE+ A+AYGL+    G  IR++KNLRVCG+CHSA KLI+KI +REI+ RD N
Sbjct: 631 KSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIVLRDAN 690

Query: 692 RFHHFKDGNCSCNDYW 707
           RFHHFKDG CSC DYW
Sbjct: 691 RFHHFKDGFCSCRDYW 706



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 126/514 (24%), Positives = 216/514 (42%), Gaps = 101/514 (19%)

Query: 176 AQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNEST 235
           A+ G +E AR  F    LR   SY AL+ GY      D A  LF  MP R+   + + + 
Sbjct: 28  ARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRD---LASYNA 84

Query: 236 VVTVLS--------ACAHMGSLELGNWVC---SLIEG---HGLGSNL-----------HV 270
           +++ LS        A A + S+     V    SL+ G   HGL ++            HV
Sbjct: 85  LISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHV 144

Query: 271 T-NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           +   L+      G + +AR LF+ +  RDV++W  M+ GY       EA  LF +M + N
Sbjct: 145 SYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRN 204

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           +    V++ +++   A  G ++L + +   + +     N VS WT+++  Y + G+++ A
Sbjct: 205 V----VSWTAMISGYAQNGEVNLARKLFEVMPER----NEVS-WTAMLVGYIQAGHVEDA 255

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKAD------------------------------- 418
            ++F+ M    +A+ NAM+ G    G  D                               
Sbjct: 256 AELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLM 315

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478
           +ALS F  M+  G++P+  + + +L+ C    +LD GR+   AM++       +     +
Sbjct: 316 EALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLR-CSFDMDVFAVSAL 374

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK--HLLELEPE 536
           + +  + G  D+A+ +  T E K D  +W S++     HG   LGE      H + L   
Sbjct: 375 ITMYIKCGNLDKAKRVFHTFEPK-DIVMWNSMITGYAQHG---LGEQALGIFHDMRLAGM 430

Query: 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQ 596
           +P         Y GA          T  +  G  K       E   + +   V   + P 
Sbjct: 431 SPDGIT-----YIGA---------LTACSYTGKVK-------EGREIFNSMTVNSSIRPG 469

Query: 597 SKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           ++H   M+D    LL +SG V +  +++ +M  E
Sbjct: 470 AEHYSCMVD----LLGRSGLVEEAFDLIKNMPVE 499



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 133/259 (51%), Gaps = 6/259 (2%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G +  A  VFE +RE +   W+ +I+ +  +   + A+  +  M+  G  PN  +   IL
Sbjct: 281 GMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISIL 340

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
             CA ++ +  G+++HA +L+   + D F  ++LI MY + G L+ A+ VF+    +D V
Sbjct: 341 TVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIV 400

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC- 256
            + ++ITGYA  G  + A  +F +M  R     P+  T +  L+AC++ G ++ G  +  
Sbjct: 401 MWNSMITGYAQHGLGEQALGIFHDM--RLAGMSPDGITYIGALTACSYTGKVKEGREIFN 458

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDY 315
           S+     +       + ++D+  + G + +A DL +++  + D + W  ++G      + 
Sbjct: 459 SMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNA 518

Query: 316 KEALMLFRQMLQSNIEPND 334
           + A +  +++L+  +EP +
Sbjct: 519 EIAEVAAKKLLE--LEPGN 535



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 124/299 (41%), Gaps = 69/299 (23%)

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI- 330
           NA I   ++ G++  AR  FE++  R   S+N ++ GY        AL LFR+M   ++ 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 331 ----------------------------EPNDVTFLSVLPACAYLGAL-DLGKWIHAYID 361
                                        P+ V+F S+L      G L D  +      +
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 362 KNH-------------------QKL------NNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
           +NH                   ++L       +V  WT+++  Y + G I  A  +FD M
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 397 GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR 456
             + + SW AMISG A +G+ + A  LF  M     + +++++  +L     AG ++   
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMP----ERNEVSWTAMLVGYIQAGHVEDAA 256

Query: 457 QYFNAMIQDYKISPKLQHYGC--MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
           + FNAM       P+     C  M+   G+ G+ D A+ + + M  + D   W++++ A
Sbjct: 257 ELFNAM-------PEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGT-WSAMIKA 307


>gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 664

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 251/701 (35%), Positives = 396/701 (56%), Gaps = 53/701 (7%)

Query: 11  SPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIE 70
           SP+ ++FP               ++L+  C +  +++ VH+ I++ G+ +++ A ++L+ 
Sbjct: 13  SPAKIYFPADRRAS---PDESHFISLIHTCKDTVSLRLVHAHILRRGVLSSRVA-AQLVS 68

Query: 71  ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNT 130
             ++    D  Y+L +F    E N  ++N +IRG + ++    +++ ++ M+  G  P+ 
Sbjct: 69  CSSLLKSPD--YSLSIFRNSEERNPFVFNALIRGLTENARFECSVRHFILMLTLGVKPDR 126

Query: 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK 190
            TFPF+LKS +K+     G+ +HA  LK  ++ D FV  SL++MYA+ G+L  A  VF +
Sbjct: 127 LTFPFVLKSNSKLGFRWLGRALHAATLKNFVDCDSFVRVSLVDMYAKTGQLNHAFQVFEE 186

Query: 191 SSLR----DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHM 246
           +  R      + +  L+ GY     +  A  LF  MP R                     
Sbjct: 187 TPDRIKKESILLWNVLVNGYCRAKDMQMATTLFRSMPERNS------------------- 227

Query: 247 GSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMI 306
                G+W                 + LI  Y   G+L +A+ LFE + +++V+SW  +I
Sbjct: 228 -----GSW-----------------STLIKGYVDNGELNRAKQLFELMPEKNVVSWTTLI 265

Query: 307 GGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK 366
            G++ T DY+ A+  + +ML+  ++PN+ T  +VL AC+  GAL  G  IH YI  N  K
Sbjct: 266 NGFSQTGDYETAISTYFEMLEKGLKPNEYTVAAVLSACSKSGALGSGIRIHGYILDNGIK 325

Query: 367 LNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSR 426
           L+  ++ TSL+DMYAKCG +  A  VF  M +K + SW AMI G A+HG+  +A+  F +
Sbjct: 326 LDR-AIGTSLLDMYAKCGEVDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQ 384

Query: 427 MIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAG 486
           M+  G +PD++ F+ VL+AC ++G +D+G  +F++M  DY I P L+HY  +VDLLGRAG
Sbjct: 385 MMYSGEKPDEVVFLAVLTACLNSGEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAG 444

Query: 487 LFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSN 546
             DEA  L++ M + PD   W +L  AC+ H +    + V ++LLEL+PE  G+Y+ L  
Sbjct: 445 KLDEAHELVEYMPINPDLTTWAALYRACKAH-KSNRTDIVLQNLLELDPELRGSYIFLDK 503

Query: 547 MYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDE 606
            +A  G++ DV   R  L  K  ++  GCS IE+   +++F   D  H Q++ I   L+ 
Sbjct: 504 THAAKGKYQDVEKRRLSLQKKVKERSMGCSYIELDCQLNKFAADDYTHKQAQEIRLKLEG 563

Query: 607 IDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRV 666
           I +L  + G++P     ++D++EE KE     HSEKLA+  GL+ T PGTTIRI+KNLR+
Sbjct: 564 IISLAIERGYIPGADWSIHDIEEEEKESVTGIHSEKLALTLGLLRTAPGTTIRIIKNLRI 623

Query: 667 CGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           CG+CHS  K +SKI  R I+ RD  +FHHFKDG+CSC DYW
Sbjct: 624 CGDCHSLMKYVSKISQRGILLRDARQFHHFKDGSCSCGDYW 664


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 253/682 (37%), Positives = 384/682 (56%), Gaps = 12/682 (1%)

Query: 30   NQPSLALLSKCTNMQNIKQ----VHSQIIKTGLHNTQFALSKLIEICAVSPF-GDLSYAL 84
            ++ +++ L KC    +  +     H  I+K G        + LI   A S   GD   A+
Sbjct: 416  DEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGD---AV 472

Query: 85   LVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS 144
            LVF  +   + + WN++I G S +     AI+ ++RM   G   ++ T   +L +CA+  
Sbjct: 473  LVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSR 532

Query: 145  AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
                G+ +H + +K GL  +  +  +L++MY+   + +S   +F     ++ VS+TA+IT
Sbjct: 533  YWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMIT 592

Query: 205  GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
             Y   G  D    L  EM +  +   P+   V + L A A   SL+ G  V      +G+
Sbjct: 593  SYMRAGLFDKVAGLLQEMVL--DGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGM 650

Query: 265  GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
               L V NAL++MY KC ++ +AR +F+ +  +DVISWN +IGGY+  +   E+  LF  
Sbjct: 651  EKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSD 710

Query: 325  MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
            ML     PN VT   +LPA A + +L+ G+ IHAY  +    L +     +L+DMY KCG
Sbjct: 711  MLL-QFRPNAVTMTCILPAAASISSLERGREIHAYALR-RGFLEDSYASNALVDMYVKCG 768

Query: 385  NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
             +  A  +FD +  K L SW  MI+G  MHG    A++LF +M G G++PD  +F  +L 
Sbjct: 769  ALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILY 828

Query: 445  ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504
            AC H+GL   GR++F AM ++YKI PKL+HY C+VDLL R G   EA   +++M ++PD+
Sbjct: 829  ACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDS 888

Query: 505  AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564
            +IW SLL  CR+H  ++L E VA  + +LEPEN G YVLL+N+YA A RW+ V  ++ ++
Sbjct: 889  SIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKI 948

Query: 565  NDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVL 624
              +G+++  G S IEV S VH F+  ++ HP    I E LD++   + + G  P     L
Sbjct: 949  GGRGLRENTGYSWIEVRSKVHVFIADNRNHPDWNRIAEFLDDVARRMRQEGHDPKKKYAL 1008

Query: 625  YDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNRE 684
               D+   + AL  HS KLA+A+G+++   G  IR+ KN +VC +CH A K ISK+ NRE
Sbjct: 1009 MGADDAVHDEALCGHSSKLAVAFGVLNLPEGRPIRVTKNSKVCSHCHEAAKFISKMCNRE 1068

Query: 685  IIARDRNRFHHFKDGNCSCNDY 706
            II RD +RFH F+ G CSC  Y
Sbjct: 1069 IILRDSSRFHRFEGGRCSCRGY 1090



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 145/536 (27%), Positives = 252/536 (47%), Gaps = 51/536 (9%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSP--------FGDLSYALLVFETIREPNQV-I 97
           K VH   +K+GL     ++   I+  A+           GD++ A  VF+ +     V +
Sbjct: 325 KAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHV 384

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
           WN I+ G++       ++  +V+M   G  P+ +    +LK    +S   +G   H +++
Sbjct: 385 WNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIV 444

Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ 217
           KLG  +   V  +LI+ YA++  +  A LVFN+   +D +S+ ++I+G +S G   +A +
Sbjct: 445 KLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIE 504

Query: 218 LFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDM 277
           LF  M  + +    +  T+++VL ACA       G  V       GL     + NAL+DM
Sbjct: 505 LFIRMWTQGQEL--DSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDM 562

Query: 278 YSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTF 337
           YS C D      +F S+ +++V+SW  MI  Y     + +   L ++M+   I P+    
Sbjct: 563 YSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAV 622

Query: 338 LSVLPACAYLGALDLGKWIHAYIDKN-HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
            S L A A   +L  GK +H Y  +N  +KL  V+   +L++MY KC N++ A  +FD +
Sbjct: 623 TSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVA--NALMEMYVKCRNVEEARLIFDRV 680

Query: 397 GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR 456
             K + SWN +I G + +   +++ SLFS M+ +  +P+ +T   +L A      L+ GR
Sbjct: 681 TNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLERGR 739

Query: 457 QYF---------------NAMIQDY--------------KISPK-LQHYGCMVDLLGRAG 486
           +                 NA++  Y              +++ K L  +  M+   G  G
Sbjct: 740 EIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHG 799

Query: 487 LFDEAEALLKTME---MKPDAAIWTSLLGACRVHGRLELGESVAKHL---LELEPE 536
               A AL + M    ++PDAA ++++L AC   G    G    K +    ++EP+
Sbjct: 800 FGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPK 855



 Score =  178 bits (452), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 153/543 (28%), Positives = 247/543 (45%), Gaps = 62/543 (11%)

Query: 78  GDLSYALLVFETI--REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPF 135
           GDL  A  VF+ +  +  +  +W +++  ++ +     A+  + +M   G  P+ +    
Sbjct: 150 GDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSC 209

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           +LK  + + +++EG+ IH  + KLGL     V  +LI +Y++ G +E A  VF+    RD
Sbjct: 210 VLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRD 269

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
           A+S+ ++I G  S G+   A  LF +M  +      +  TV++VL ACA +G   +G  V
Sbjct: 270 AISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEI--SSVTVLSVLPACAGLGYGLIGKAV 327

Query: 256 CSLIEGHGLGSNLHVTNALID----------MYSKCGDLVKARDLFESI-EKRDVISWNV 304
                  GL   L    + ID          MY KCGD+  AR +F+++  K +V  WN+
Sbjct: 328 HGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNL 387

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           ++GGY    +++E+L LF QM +  I P++     +L     L     G   H YI K  
Sbjct: 388 IMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLG 447

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF 424
                 ++  +LI  YAK   I  A  VF+ M  +   SWN++ISG + +G   +A+ LF
Sbjct: 448 FG-AQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELF 506

Query: 425 SRMIGEGLQPDDITFVGVLSACNHAGLLDIGR---------------------------- 456
            RM  +G + D +T + VL AC  +     GR                            
Sbjct: 507 IRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNC 566

Query: 457 -------QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEM---KPDAAI 506
                  Q F +M Q   +S     +  M+    RAGLFD+   LL+ M +   +PD   
Sbjct: 567 SDWQSTNQIFRSMGQKNVVS-----WTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFA 621

Query: 507 WTSLLGACRVHGRLELGESVAKHLLE--LEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564
            TS L A      L+ G+SV  + +   +E   P A  L+  MY      ++   I  R+
Sbjct: 622 VTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALM-EMYVKCRNVEEARLIFDRV 680

Query: 565 NDK 567
            +K
Sbjct: 681 TNK 683



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 199/421 (47%), Gaps = 30/421 (7%)

Query: 119 VRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESD----PFVHTSLINM 174
           +R++ S    +  ++  +++ C +  ++   K+ HA +      +       +   L+  
Sbjct: 86  LRLLGSDGGVDVRSYCMVVQLCGEERSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLA 145

Query: 175 YAQNGELESARLVFN--KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPN 232
           Y + G+L  AR VF+       D   +T+L++ YA  G   +A  LF +M        P+
Sbjct: 146 YLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQC--CGVSPD 203

Query: 233 ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFE 292
              V  VL   + +GSL  G  +  L+E  GLG    V NALI +YS+CG +  A  +F+
Sbjct: 204 AHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFD 263

Query: 293 SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL 352
           S+  RD ISWN MIGG      +  A+ LF +M     E + VT LSVLPACA LG   +
Sbjct: 264 SMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLI 323

Query: 353 GKWIHAY---------IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLA 402
           GK +H Y         +D     +++ +L + L+ MY KCG++ +A +VFD M  K  + 
Sbjct: 324 GKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVH 383

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS-----ACNHAGLLDIGRQ 457
            WN ++ G A  G+ +++LSLF +M   G+ PD+     +L      +C   GL+  G  
Sbjct: 384 VWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHG-- 441

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
                I       +      ++    ++ +  +A  +   M  + D   W S++  C  +
Sbjct: 442 ----YIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMP-RQDTISWNSVISGCSSN 496

Query: 518 G 518
           G
Sbjct: 497 G 497



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 133/491 (27%), Positives = 219/491 (44%), Gaps = 18/491 (3%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L  +S   ++   + +H  + K GL       + LI +   S  G +  A  VF+++   
Sbjct: 211 LKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAV--YSRCGRMEDAARVFDSMHPR 268

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           + + WN++I G   +     A+  + +M   G   ++ T   +L +CA +     GK +H
Sbjct: 269 DAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVH 328

Query: 154 AHVLKLGLE----------SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALI 203
            + +K GL            D  + + L+ MY + G++ SAR VF+  S +  V    LI
Sbjct: 329 GYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLI 388

Query: 204 T-GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
             GYA  G  +++  LF +M   E    P+E  +  +L     +     G      I   
Sbjct: 389 MGGYAKVGEFEESLSLFVQM--HELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKL 446

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
           G G+   V NALI  Y+K   +  A  +F  + ++D ISWN +I G +      EA+ LF
Sbjct: 447 GFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELF 506

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
            +M     E + VT LSVLPACA       G+ +H Y  K    +   SL  +L+DMY+ 
Sbjct: 507 IRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGL-IGETSLANALLDMYSN 565

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
           C + ++  Q+F  MG K + SW AMI+     G  DK   L   M+ +G++PD       
Sbjct: 566 CSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSA 625

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
           L A      L  G+      I++  +   L     ++++  +    +EA  +   +  K 
Sbjct: 626 LHAFAGDESLKQGKSVHGYTIRN-GMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNK- 683

Query: 503 DAAIWTSLLGA 513
           D   W +L+G 
Sbjct: 684 DVISWNTLIGG 694


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 255/583 (43%), Positives = 360/583 (61%), Gaps = 20/583 (3%)

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMY----AQNGELESARLVFNK-S 191
           L  C  +  ++   Q+HA  +K GL + P + T L+ +     A    L  AR VF++  
Sbjct: 32  LPHCTSLRTLA---QLHAAAVKAGLAAHPALVTRLLTLCTGPDAGPAHLAYARQVFDRVP 88

Query: 192 SLRDAVSYTALITGYA-----SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHM 246
              DAV Y  L+ GYA     S      A ++F  M   EE   P+  T V++L ACA  
Sbjct: 89  HPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRM--LEEGVAPDTYTFVSLLKACAAA 146

Query: 247 GSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMI 306
            + E G    +L    G   + +V   LI+MY++CGD   AR +F   +   V+S+N MI
Sbjct: 147 RAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMFGGTDGGCVVSYNAMI 206

Query: 307 GGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK-NHQ 365
                +S   EAL+LFR+M    ++P  VT +SVL ACA LGAL+LG+W+H Y+ K    
Sbjct: 207 AAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGALELGRWVHDYVRKIGLG 266

Query: 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
            L  VS  T+LIDMYAKCG+++ A  VF GM  K   +W+ MI   A HG   +A+SLF 
Sbjct: 267 SLVKVS--TALIDMYAKCGSLEDAIDVFQGMESKDRQAWSVMIVAYANHGYGREAISLFE 324

Query: 426 RMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485
            M  EG++PDDITF+GVL AC+H+GL+  G QYF+ M +D+ I P ++HYGC+ DLL R+
Sbjct: 325 EMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFDDM-KDHGIVPGIKHYGCVTDLLARS 383

Query: 486 GLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545
           G  + A   +  + + P   +W +LL AC  HG  ELG+ V + +L+L+  + G YV+ S
Sbjct: 384 GQLERAYKFIDELPINPTPILWRTLLSACGGHGDFELGKRVFERILKLDDSHGGDYVIFS 443

Query: 546 NMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLD 605
           N+ A  G W+++  +R  +++KG+ KVPGCSSIE+ + VHEF  GD  HP+S+   +M+D
Sbjct: 444 NLCANTGYWEEMNMVRKLMSEKGVVKVPGCSSIEIDNTVHEFFAGDGRHPKSQEARKMVD 503

Query: 606 EIDALLEKSGFVPDTSEVLY-DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNL 664
           E+   L+  G+VP+TS V + +M EE K  +L +HSEKLAIA+GL++T PG T+R+VKNL
Sbjct: 504 EVIDQLKLVGYVPNTSHVFHVEMGEEEKAISLKYHSEKLAIAFGLLNTAPGATLRVVKNL 563

Query: 665 RVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           RVC +CHS  KL+S +FNR II RD NRFHHF++G CSC DYW
Sbjct: 564 RVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEEGICSCGDYW 606



 Score =  253 bits (646), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 152/435 (34%), Positives = 242/435 (55%), Gaps = 21/435 (4%)

Query: 6   SSLTLSPS-ILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFA 64
           + LT +P+ +L   P S PP    Q  P L+ L  CT+++ + Q+H+  +K GL      
Sbjct: 4   APLTATPAPLLPAKPKSPPP----QQHPVLSHLPHCTSLRTLAQLHAAAVKAGLAAHPAL 59

Query: 65  LSKLIEICAVSPFGD--LSYALLVFETIREPNQVIW-NNIIRGHSLSSSP-----VVAIK 116
           +++L+ +C     G   L+YA  VF+ +  P   +W N ++RG++ SS+P       A++
Sbjct: 60  VTRLLTLCTGPDAGPAHLAYARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVR 119

Query: 117 FYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYA 176
            +VRM+  G  P+TYTF  +LK+CA   A  EG+Q HA  +KLG     +V  +LINMYA
Sbjct: 120 VFVRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYA 179

Query: 177 QNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTV 236
           + G+  +AR++F  +     VSY A+I          +A  LF EM  + +   P   TV
Sbjct: 180 ECGDARAARVMFGGTDGGCVVSYNAMIAAAVRSSRPGEALVLFREM--QGKGLKPTSVTV 237

Query: 237 VTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK 296
           ++VLSACA +G+LELG WV   +   GLGS + V+ ALIDMY+KCG L  A D+F+ +E 
Sbjct: 238 ISVLSACALLGALELGRWVHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMES 297

Query: 297 RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
           +D  +W+VMI  Y +    +EA+ LF +M +  ++P+D+TFL VL AC++ G +  G   
Sbjct: 298 KDRQAWSVMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGL-- 355

Query: 357 HAYID--KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAM 413
             Y D  K+H  +  +  +  + D+ A+ G ++ A +  D +    T   W  ++S    
Sbjct: 356 -QYFDDMKDHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGG 414

Query: 414 HGKADKALSLFSRMI 428
           HG  +    +F R++
Sbjct: 415 HGDFELGKRVFERIL 429


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 249/691 (36%), Positives = 390/691 (56%), Gaps = 56/691 (8%)

Query: 23  PPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSY 82
           P    L NQ  L L +K   +++ + +  +++K  +    F+ + L+   A S  G +  
Sbjct: 55  PTDSFLHNQL-LHLYAKFGKLRDAQNLFDKMLKRDI----FSWNALLSAYAKS--GSIQN 107

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
               F+ +   + V +N  I G S +S P  +++ + RM   GF P  YT   IL + A+
Sbjct: 108 LKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQ 167

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
           +S +  GKQIH  ++      + F+  +L +MYA+ GE+E AR +F+  + ++ VS+  +
Sbjct: 168 LSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLM 227

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
           I+GYA  G  +    L  +M  R    +P++ T+ T+++A                    
Sbjct: 228 ISGYAKNGQPEKCIGLLHQM--RLSGHMPDQVTMSTIIAA-------------------- 265

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
                          Y +CG + +AR +F   +++D++ W  M+ GY      ++AL+LF
Sbjct: 266 ---------------YCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLF 310

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH-----AYIDKNHQKLNNVSLWTSLI 377
            +ML  +IEP+  T  SV+ +CA L +L  G+ +H     A ++      NN+ + ++LI
Sbjct: 311 NEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLN------NNLLVSSALI 364

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI 437
           DMY+KCG I  A  VF+ M  + + SWNAMI G A +G    AL LF  M+ +  +PD++
Sbjct: 365 DMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNV 424

Query: 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT 497
           TF+G+LSAC H   ++ G++YF+++   + ++P L HY CMV+LLGR G  ++A AL+K 
Sbjct: 425 TFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKN 484

Query: 498 MEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557
           M   PD  IW++LL  C   G +   E  A+HL EL+P     Y++LSNMYA  GRW DV
Sbjct: 485 MAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDV 544

Query: 558 ATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFV 617
           A++R  +  K +KK  G S IE+ + VH F   D+ HP+S+ IYE L+ +   L++ GF 
Sbjct: 545 ASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFT 604

Query: 618 PDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTT-IRIVKNLRVCGNCHSATKL 676
           P+T+ VL+D+ E+ K  ++  HSEKLA+A+GLI    G + IRI+KN+R+C +CH   K 
Sbjct: 605 PNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKF 664

Query: 677 ISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            S+I  R+II RD NRFHHF  G CSCND W
Sbjct: 665 ASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/266 (19%), Positives = 106/266 (39%), Gaps = 36/266 (13%)

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
           +  ++  C     ++  K + ++++ +  +  +  L   L+ +YAK G ++ A+ +FD M
Sbjct: 25  YTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKM 84

Query: 397 GYKTLASWNAMISGLAMHGK-------------------------------ADKALSLFS 425
             + + SWNA++S  A  G                                  ++L LF 
Sbjct: 85  LKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFK 144

Query: 426 RMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485
           RM  EG +P + T V +L+A      L  G+Q   ++I    +      +  + D+  + 
Sbjct: 145 RMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFI-WNALTDMYAKC 203

Query: 486 GLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545
           G  ++A  L   +  K +   W  ++     +G+ E    +  H + L    P    + +
Sbjct: 204 GEIEQARWLFDCL-TKKNLVSWNLMISGYAKNGQPEKCIGLL-HQMRLSGHMPDQVTMST 261

Query: 546 NM--YAGAGRWDDVATIRTRLNDKGM 569
            +  Y   GR D+   + +   +K +
Sbjct: 262 IIAAYCQCGRVDEARRVFSEFKEKDI 287


>gi|297739749|emb|CBI29931.3| unnamed protein product [Vitis vinifera]
          Length = 838

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 261/717 (36%), Positives = 393/717 (54%), Gaps = 58/717 (8%)

Query: 43  MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNII 102
            Q  +Q+H++II  G  ++    + LI++   S  G +  A LVFE +   + V W  +I
Sbjct: 128 FQVTEQIHAKIIHHGFGSSPLVCNPLIDL--YSKNGHVDLAKLVFERLFLKDSVSWVAMI 185

Query: 103 RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE 162
            G S +     AI  + +M  S  +P  Y F  +L +C KI     G+Q+H  ++K GL 
Sbjct: 186 SGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLS 245

Query: 163 SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
           S+ FV  +L+ +Y++ G L +A  +F+K   RD +SY +LI+G A RG+ D A QLF++M
Sbjct: 246 SETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKM 305

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
            +  +   P+  TV ++LSACA +G+   G  + S +   G+ S+L +  +L+D+Y KC 
Sbjct: 306 QL--DCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCF 363

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
           D+  A + F + E  +V+ WNVM+  Y    +  E+  +F QM    + PN  T+ S+L 
Sbjct: 364 DIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILR 423

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
            C  LGALDLG+ IH  + K+  + N V + + LIDMYAK G +  A  +   +  + + 
Sbjct: 424 TCTSLGALDLGEQIHTQVIKSGFQFN-VYVCSVLIDMYAKHGELDTARGILQRLREEDVV 482

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ----- 457
           SW AMI+G   H    +AL LF  M  +G++ D+I F   +SAC     L+ G+Q     
Sbjct: 483 SWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQS 542

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAG------------------------------- 486
           Y +   +D  I   L     ++ L  + G                               
Sbjct: 543 YISGYSEDLSIGNALAS-NVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHG 601

Query: 487 -------LFDEAEAL---------LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHL 530
                  LF+E + L         +  M ++PDA IW +LL AC VH  +E+GE  A+HL
Sbjct: 602 YGSEAVSLFEEMKQLGLMPNHVTFVGEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHL 661

Query: 531 LELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVG 590
           LELEPE+   YVLLSNMYA +G+WD     R  + D+G+KK PG S IEV + +H F VG
Sbjct: 662 LELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVG 721

Query: 591 DKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLI 650
           D++HP ++ IYE +D+++    + G+V D   +L D+++E K+     HSEKLA+A+GL+
Sbjct: 722 DRLHPLAEQIYEYIDDLNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLL 781

Query: 651 STKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           S      IR++KNLRVC +CH+  K +SKI NR I+ RD  RFHHF+ G CSC DYW
Sbjct: 782 SLTNTMPIRVIKNLRVCNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 838



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 133/478 (27%), Positives = 237/478 (49%), Gaps = 38/478 (7%)

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
           G   N  T+ ++ + C    ++ + K++HA + K G + +  + + LI++Y  +GE+++A
Sbjct: 5   GIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNA 64

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
             +F+     +   +  +I+G  ++        LF  M    EN  P+EST  +VL AC+
Sbjct: 65  IKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMIT--ENVTPDESTFASVLRACS 122

Query: 245 -HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN 303
                 ++   + + I  HG GS+  V N LID+YSK G +  A+ +FE +  +D +SW 
Sbjct: 123 GGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWV 182

Query: 304 VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363
            MI G +      EA++LF QM +S + P    F SVL AC  +    LG+ +H +I K 
Sbjct: 183 AMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKW 242

Query: 364 HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSL 423
               +   +  +L+ +Y++ GN+ AAEQ+F  M  +   S+N++ISGLA  G +D+AL L
Sbjct: 243 GLS-SETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQL 301

Query: 424 FSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ------------------- 464
           F +M  + ++PD +T   +LSAC   G    G+Q  + +I+                   
Sbjct: 302 FEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVK 361

Query: 465 --------DYKISPKLQH---YGCMVDLLGRAGLFDEAEALLKTMEMK---PDAAIWTSL 510
                   +Y ++ + ++   +  M+   G+ G   E+  +   M+++   P+   + S+
Sbjct: 362 CFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSI 421

Query: 511 LGACRVHGRLELGESVAKHLLELEPE-NPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
           L  C   G L+LGE +   +++   + N     +L +MYA  G  D    I  RL ++
Sbjct: 422 LRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREE 479



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 156/344 (45%), Gaps = 35/344 (10%)

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
           + E     N  T + +   C + GSL     + + I   G      + + LID+Y   G+
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           +  A  LF+ I   +V  WN +I G        + L LF  M+  N+ P++ TF SVL A
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 344 CAYLGA-LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           C+   A   + + IHA I  +H   ++  +   LID+Y+K G++  A+ VF+ +  K   
Sbjct: 121 CSGGKAPFQVTEQIHAKI-IHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSV 179

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF--- 459
           SW AMISGL+ +G+ D+A+ LF +M    + P    F  VLSAC    L  +G Q     
Sbjct: 180 SWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFI 239

Query: 460 ------------NAMIQDY----------KISPKLQH-----YGCMVDLLGRAGLFDEAE 492
                       NA++  Y          +I  K+       Y  ++  L + G  D A 
Sbjct: 240 VKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRAL 299

Query: 493 ALLKTME---MKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL 533
            L + M+   MKPD     SLL AC   G    G+ +  +++++
Sbjct: 300 QLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKM 343


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 258/700 (36%), Positives = 392/700 (56%), Gaps = 46/700 (6%)

Query: 50  HSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSS 109
           H  I K    N+   +S L + CAVS   +L     + +     + V W  ++ G++ + 
Sbjct: 261 HEMIEKRFEPNSVTVVSAL-QACAVSR--NLEEGKKIHKIAVWKDVVSWVALLSGYAQNG 317

Query: 110 SPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHT 169
               ++  +  M+  G  P+      IL + +++    +   +H +V++ G  S+ FV  
Sbjct: 318 MAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGA 377

Query: 170 SLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM------- 222
           SLI +Y++ G L  A  +F    +RD V ++++I  Y   G   +A ++FD+M       
Sbjct: 378 SLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMIQVMQGI 437

Query: 223 ---------PIREENFVPNESTVVT-------VLSACAHMGSL------------ELGNW 254
                    P  +        T+ T            AH   L            +  + 
Sbjct: 438 TSCYQISMQPQVQPPLAITSCTLATHIPWKVKAFYMRAHFRWLGHFWEIFPTYPFQAADM 497

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
             S I  +GL  +  +      MY     +  A  +FE I       WNVMI G+     
Sbjct: 498 SKSNIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGR 557

Query: 315 YKEALMLFRQMLQ-------SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
           +  +L L+ +M++       S + PN V+ LSVL AC  LGAL  G+W H+Y+ +   + 
Sbjct: 558 FLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEF 617

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
           + + + T+++DMY+KCG++  A  +FD    K L  W+AMI+   +HG   KA+ LF +M
Sbjct: 618 D-ILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQM 676

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
           +  G++P  +TF  VLSAC+H+GLL+ G+ YF  M +++ I+ KL +Y CMVDLLGRAG 
Sbjct: 677 VKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQ 736

Query: 488 FDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547
             EA  L++ M ++PDA+IW SLLGACR+H  L+L E +A HL  L+P + G +VLLSN+
Sbjct: 737 LSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNI 796

Query: 548 YAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEI 607
           YA   RW++V  +R  +  +G  K+ G S +E  + VH+F VGD+ HPQ + +Y  L+E+
Sbjct: 797 YAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEEL 856

Query: 608 DALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVC 667
            A ++  G+VP T  VL+D++EE KE ALS+HSE+LAIA+GLI+T PGTT+RI KNLR+C
Sbjct: 857 AAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRIC 916

Query: 668 GNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           G+CH+A KLISKI NR I+ RD +RFH F+DG CSC DYW
Sbjct: 917 GDCHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 956



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/429 (27%), Positives = 210/429 (48%), Gaps = 43/429 (10%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTG-LHNTQFA--LSKLIEICAVSPFGDLSYALLVFETIRE 92
           L   C N +++ Q+HSQ+ KTG LH+T FA  L+ L   CA      L  A  VF+    
Sbjct: 10  LFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCA-----SLQAARKVFDETPH 64

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILS-GFVPNTYTFPFILKSCAKISAISEGKQ 151
           PN  +WN+ +R +         ++ +  MI + G  P+ +T P  LK+CA +  +  GK 
Sbjct: 65  PNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKV 124

Query: 152 IHAHVLKLG-LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           IH    K   + SD FV ++L+ +Y++ G++  A  VF +    D V +T+++TGY    
Sbjct: 125 IHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNN 184

Query: 211 YLDDARQLFDEMPIRE---------------------ENFVPN------ESTVVTVLSAC 243
             ++A  LF +M + +                     E    N      E  V++  +  
Sbjct: 185 DPEEALALFSQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMI 244

Query: 244 AHMGSLELGNWVCSL----IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV 299
           A   + E  N   +L    IE     +++ V +AL    +   +L + + + +    +DV
Sbjct: 245 ACYANNEAANEALNLFHEMIEKRFEPNSVTVVSAL-QACAVSRNLEEGKKIHKIAVWKDV 303

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
           +SW  ++ GY       +++ +FR ML   I+P+ V  + +L A + LG       +H Y
Sbjct: 304 VSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGY 363

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADK 419
           + ++    +NV +  SLI++Y+KCG++  A ++F GM  + +  W++MI+   +HG+  +
Sbjct: 364 VVRSGFN-SNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGE 422

Query: 420 ALSLFSRMI 428
           AL +F +MI
Sbjct: 423 ALEIFDQMI 431



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/421 (26%), Positives = 203/421 (48%), Gaps = 48/421 (11%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           + ++C    ++S   Q+H+ V K G+  D F  T L ++YA+   L++AR VF+++   +
Sbjct: 10  LFQACNNGRSVS---QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPN 66

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
              + + +  Y      ++  +LF  M I      P+  T+   L ACA +  LELG  +
Sbjct: 67  VHLWNSTLRSYCREKQWEETLRLFHLM-ICTAGEAPDNFTIPIALKACAGLRMLELGKVI 125

Query: 256 CSLIEGHG-LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
               + +  +GS++ V +AL+++YSKCG + +A  +FE  ++ D + W  M+ GY   +D
Sbjct: 126 HGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNND 185

Query: 315 YKEALMLFRQM-------------------------------LQSNIEPNDVTFLSVLPA 343
            +EAL LF QM                               L S +   DV   S + A
Sbjct: 186 PEEALALFSQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIA 245

Query: 344 C-----AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
           C     A   AL+L    H  I+K  +  N+V++  S +   A   N++  +++     +
Sbjct: 246 CYANNEAANEALNL---FHEMIEKRFEP-NSVTV-VSALQACAVSRNLEEGKKIHKIAVW 300

Query: 399 KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQY 458
           K + SW A++SG A +G A K++ +F  M+ +G+QPD +  V +L+A +  G+       
Sbjct: 301 KDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCL 360

Query: 459 FNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
              +++    +  +     +++L  + G   +A  L K M ++ D  IW+S++ A  +HG
Sbjct: 361 HGYVVRS-GFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSSMIAAYGIHG 418

Query: 519 R 519
           R
Sbjct: 419 R 419



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 126/533 (23%), Positives = 225/533 (42%), Gaps = 85/533 (15%)

Query: 63  FALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI 122
           F  S L+E+   S  G +  AL VFE  + P+ V+W +++ G+  ++ P  A+  + +M+
Sbjct: 140 FVGSALVEL--YSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMV 197

Query: 123 L----SGFVP--NTYTFPFILKSCAKIS--------------------------AISEGK 150
           +     G +P  N+    +    C KI+                          A +E  
Sbjct: 198 MMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEAL 257

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
            +   +++   E +     S +   A +  LE  + +   +  +D VS+ AL++GYA  G
Sbjct: 258 NLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKDVVSWVALLSGYAQNG 317

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
               +  +F  M    +   P+   VV +L+A + +G  +    +   +   G  SN+ V
Sbjct: 318 MAYKSMGVFRNM--LSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFV 375

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM----- 325
             +LI++YSKCG L  A  LF+ +  RDV+ W+ MI  Y       EAL +F QM     
Sbjct: 376 GASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMIQVMQ 435

Query: 326 ---------LQSNIEP----NDVTFLSVLP---ACAYLGALDLGKWI---------HAYI 360
                    +Q  ++P       T  + +P      Y+ A    +W+         + + 
Sbjct: 436 GITSCYQISMQPQVQPPLAITSCTLATHIPWKVKAFYMRA--HFRWLGHFWEIFPTYPFQ 493

Query: 361 DKNHQKLN--------NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLA 412
             +  K N        +  + T    MY     I AA  VF+ +       WN MI G A
Sbjct: 494 AADMSKSNIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFA 553

Query: 413 MHGKADKALSLFSRMIGEGLQPDD-------ITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
             G+   +L L+S+M+ +GL+PD+       ++ + VL AC + G L  G ++F++ +  
Sbjct: 554 TDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKG-EWFHSYVIQ 612

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
                 +     ++D+  + G  D A  L      K D   W++++ +  +HG
Sbjct: 613 TGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGK-DLVCWSAMIASYGIHG 664



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 139/309 (44%), Gaps = 12/309 (3%)

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
           G+  +      L  +Y+KC  L  AR +F+     +V  WN  +  Y     ++E L LF
Sbjct: 31  GILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLF 90

Query: 323 RQMLQSNIE-PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381
             M+ +  E P++ T    L ACA L  L+LGK IH +  KN +  +++ + ++L+++Y+
Sbjct: 91  HLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYS 150

Query: 382 KCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFV- 440
           KCG +  A +VF+         W +M++G   +   ++AL+LFS+M+       D+  V 
Sbjct: 151 KCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCFDGDLPLVN 210

Query: 441 GVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-- 498
            +L+     G   I    F+ M +   IS     +  M+         +EA  L   M  
Sbjct: 211 SLLNLYAKTGCEKIAANLFSKMPEKDVIS-----WSTMIACYANNEAANEALNLFHEMIE 265

Query: 499 -EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557
              +P++    S L AC V   LE G+ +  H + +  +      LLS        +  +
Sbjct: 266 KRFEPNSVTVVSALQACAVSRNLEEGKKI--HKIAVWKDVVSWVALLSGYAQNGMAYKSM 323

Query: 558 ATIRTRLND 566
              R  L+D
Sbjct: 324 GVFRNMLSD 332


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 237/653 (36%), Positives = 384/653 (58%), Gaps = 32/653 (4%)

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG--FVPNTYTFPFILKSCAKI 143
           +F ++ + + V +N +I G S   +   A++ Y  ++ +G    P+  T   ++ + + +
Sbjct: 94  LFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASAL 153

Query: 144 SAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALI 203
              + G+Q H  +L+LG   + FV + L+ MYA+ G +  A+ VF++   ++ V Y  +I
Sbjct: 154 GDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMI 213

Query: 204 TGYASRGYLDDARQLFDEMPIRE-----------------------------ENFVPNES 234
           TG      +++AR+LF+ M  R+                             +    ++ 
Sbjct: 214 TGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQY 273

Query: 235 TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
           T  ++L+AC  + +LE G  + + I       N+ V +AL+DMYSKC  +  A   F  +
Sbjct: 274 TFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRM 333

Query: 295 EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGK 354
             +++ISW  +I GY      +EA+ +F +M +  I+P+D T  SV+ +CA L +L+ G 
Sbjct: 334 SCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGA 393

Query: 355 WIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMH 414
             H  +      ++ +++  +L+ +Y KCG+I+ A ++FD M +    SW A+++G A  
Sbjct: 394 QFHC-LALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQF 452

Query: 415 GKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQH 474
           G+A + + LF +M+ + ++PD +TF+GVLSAC+ AG ++ G  YF++M +D+ I P   H
Sbjct: 453 GRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDH 512

Query: 475 YGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534
           Y CM+DL  R+G   EAE  +K M M PDA  W +LL ACR+ G +E+G+  A++LLE++
Sbjct: 513 YTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEID 572

Query: 535 PENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVH 594
           P+NP +YVLL +M+A  G W+ VA +R  + D+ +KK PGCS I+  + VH F   D+ H
Sbjct: 573 PQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSH 632

Query: 595 PQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKP 654
           P SK IYE L+ +++ + + G+ PD S VL+D+ +  K   +SHHSEKLAIA+GL+    
Sbjct: 633 PFSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLAIAFGLMFVPH 692

Query: 655 GTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
              IRIVKNLRVC +CH+ATKLISKI  R+I+ RD  RFH F +G CSC D+W
Sbjct: 693 EMPIRIVKNLRVCVDCHNATKLISKITGRDILVRDAVRFHKFSNGVCSCGDFW 745



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 119/389 (30%), Positives = 184/389 (47%), Gaps = 42/389 (10%)

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           F + +L++  A    L+    +F   + RD VSY A+I G++  G    A +L+  +   
Sbjct: 73  FTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRA 132

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK----- 280
             +  P+  T+  ++ A + +G   LG      I   G G N  V + L+ MY+K     
Sbjct: 133 GSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIG 192

Query: 281 --------------------------CGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
                                     C  + +AR LFE +  RD I+W  M+ G+T    
Sbjct: 193 DAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGL 252

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
             +AL  FR+M    I  +  TF S+L AC  L AL+ GK IHAYI + H   +NV + +
Sbjct: 253 ESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYD-DNVFVGS 311

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
           +L+DMY+KC +IK AE  F  M  K + SW A+I G   +G +++A+ +FS M  +G+ P
Sbjct: 312 ALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDP 371

Query: 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY----GCMVDLLGRAGLFDE 490
           DD T   V+S+C +   L+ G Q+         +   L HY      +V L G+ G  ++
Sbjct: 372 DDFTLGSVISSCANLASLEEGAQF-----HCLALVSGLMHYITVSNALVTLYGKCGSIED 426

Query: 491 AEALLKTMEMKPDAAIWTSLLGACRVHGR 519
           A  L   M +  D   WT+L+      GR
Sbjct: 427 AHRLFDEM-LFHDQVSWTALVTGYAQFGR 454



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/423 (24%), Positives = 191/423 (45%), Gaps = 64/423 (15%)

Query: 35  ALLSKC---TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ++L+ C   + ++  KQ+H+ II+T   +  F  S L+++   S    +  A   F  + 
Sbjct: 277 SILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDM--YSKCRSIKPAETAFRRMS 334

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             N + W  +I G+  +     A++ +  M   G  P+ +T   ++ SCA ++++ EG Q
Sbjct: 335 CKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQ 394

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
            H   L  GL     V  +L+ +Y + G +E A  +F++    D VS+TAL+TGYA  G 
Sbjct: 395 FHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGR 454

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHV 270
             +   LF++M  ++    P+  T + VLSAC+  G +E G ++  S+ + HG+      
Sbjct: 455 AKETIDLFEKMLAKDVK--PDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDH 512

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
              +ID+YS+ G L                               KEA    +QM    +
Sbjct: 513 YTCMIDLYSRSGRL-------------------------------KEAEEFIKQM---PM 538

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN--NVSLWTSLIDMYAKCGNIKA 388
            P+ + + ++L AC   G +++G+W      +N  +++  N + +  L  M+A  GN   
Sbjct: 539 HPDAIGWGTLLSACRLRGDMEIGQW----AAENLLEIDPQNPASYVLLCSMHATKGNWNQ 594

Query: 389 AEQVFDGMGYKTL-----ASWNAMISGLAMHGKADKALS-----------LFSRMIGEGL 432
             Q+  GM  + +      SW    + + +    D++             L S+M+ EG 
Sbjct: 595 VAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSKGIYEKLEWLNSKMLEEGY 654

Query: 433 QPD 435
           +PD
Sbjct: 655 KPD 657



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 125/278 (44%), Gaps = 36/278 (12%)

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML 326
           NL   NAL+   +    L     LF S+ +RD +S+N +I G++    +  A+ L+  +L
Sbjct: 71  NLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLL 130

Query: 327 Q--SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           +  S++ P+ +T  +++ A + LG   LG+  H  I +    +N   + + L+ MYAK G
Sbjct: 131 RAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAF-VGSPLVGMYAKMG 189

Query: 385 NIKAAEQVFDGMGYKTLA-------------------------------SWNAMISGLAM 413
            I  A++VFD M  K +                                +W  M++G   
Sbjct: 190 LIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQ 249

Query: 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQ 473
           +G   +AL+ F RM  +G+  D  TF  +L+AC     L+ G+Q    +I+ +     + 
Sbjct: 250 NGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTH-YDDNVF 308

Query: 474 HYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
               +VD+  +      AE   + M  K +   WT+L+
Sbjct: 309 VGSALVDMYSKCRSIKPAETAFRRMSCK-NIISWTALI 345


>gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840
 gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana]
 gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 254/705 (36%), Positives = 395/705 (56%), Gaps = 60/705 (8%)

Query: 11  SPSILHFPPSSDPPYKLLQNQPS----LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALS 66
           SP+ ++FP          Q  P     ++L+  C +  +++ VH+QI++ G+ +++ A +
Sbjct: 13  SPAKIYFPADR-------QASPDESHFISLIHACKDTASLRHVHAQILRRGVLSSRVA-A 64

Query: 67  KLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGF 126
           +L+   ++    D  Y+L +F    E N  + N +IRG + ++    +++ ++ M+  G 
Sbjct: 65  QLVSCSSLLKSPD--YSLSIFRNSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGV 122

Query: 127 VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARL 186
            P+  TFPF+LKS +K+     G+ +HA  LK  ++ D FV  SL++MYA+ G+L+ A  
Sbjct: 123 KPDRLTFPFVLKSNSKLGFRWLGRALHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQ 182

Query: 187 VFNKSSLR----DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSA 242
           VF +S  R      + +  LI GY     +  A  LF  MP R                 
Sbjct: 183 VFEESPDRIKKESILIWNVLINGYCRAKDMHMATTLFRSMPERNS--------------- 227

Query: 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
                    G+W                 + LI  Y   G+L +A+ LFE + +++V+SW
Sbjct: 228 ---------GSW-----------------STLIKGYVDSGELNRAKQLFELMPEKNVVSW 261

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
             +I G++ T DY+ A+  + +ML+  ++PN+ T  +VL AC+  GAL  G  IH YI  
Sbjct: 262 TTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILD 321

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALS 422
           N  KL+  ++ T+L+DMYAKCG +  A  VF  M +K + SW AMI G A+HG+  +A+ 
Sbjct: 322 NGIKLDR-AIGTALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQ 380

Query: 423 LFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482
            F +M+  G +PD++ F+ VL+AC ++  +D+G  +F++M  DY I P L+HY  +VDLL
Sbjct: 381 CFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLL 440

Query: 483 GRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV 542
           GRAG  +EA  L++ M + PD   W +L  AC+ H      ESV+++LLEL+PE  G+Y+
Sbjct: 441 GRAGKLNEAHELVENMPINPDLTTWAALYRACKAHKGYRRAESVSQNLLELDPELCGSYI 500

Query: 543 LLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYE 602
            L   +A  G   DV   R  L  +  ++  G S IE+   +++F  GD  H  ++ I  
Sbjct: 501 FLDKTHASKGNIQDVEKRRLSLQKRIKERSLGWSYIELDGQLNKFSAGDYSHKLTQEIGL 560

Query: 603 MLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVK 662
            LDEI +L  + G+ P     ++D++EE KE     HSEKLA+  G + T PGTTIRI+K
Sbjct: 561 KLDEIISLAIQKGYNPGADWSIHDIEEEEKENVTGIHSEKLALTLGFLRTAPGTTIRIIK 620

Query: 663 NLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           NLR+CG+CHS  K +SKI  R+I+ RD  +FHHFKDG CSC DYW
Sbjct: 621 NLRICGDCHSLMKYVSKISQRDILLRDARQFHHFKDGRCSCGDYW 665


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/630 (38%), Positives = 368/630 (58%), Gaps = 50/630 (7%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G +  A  +F++  E + + WN ++ G+   S    A K + +M     V    ++  ++
Sbjct: 245 GRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVV----SWNTMV 300

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
              A+   ++E +++      +    D F  T++++ YAQNG LE A+ VF+    ++AV
Sbjct: 301 SGYARRGDMAEARRL----FDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAV 356

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           S+ A++  Y  R  +++A++LFD MP R                                
Sbjct: 357 SWNAMMAAYVQRRMMEEAKELFDAMPCR-------------------------------- 384

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
                    N+   N ++  Y++ G L +AR +F  + ++D +SW  M+  Y+     +E
Sbjct: 385 ---------NVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEE 435

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
            L LF++M +     N   F  VL  CA + AL+ G  +H+ + K    +    +  +L+
Sbjct: 436 TLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCF-VGNALL 494

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI 437
            MY KCG+++ A   F+ M  + + SWN MI+G A HG   +AL +F  M     +PDDI
Sbjct: 495 AMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDI 554

Query: 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT 497
           T VGVL+AC+H+GL++ G  YF +M +D+ ++ K +HY CM+DLLGRAG  DEA  L+K 
Sbjct: 555 TLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKD 614

Query: 498 MEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557
           M  +PD+ +W +LLGA R+H   ELG + A+ + ELEPEN G YVLLSN+YA +G+W DV
Sbjct: 615 MPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDV 674

Query: 558 ATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFV 617
             +R  ++++G+KKVPG S IEV + VH F VGD VHP+ + IY  L+++D  ++K+G+V
Sbjct: 675 DKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYAFLEDLDIRMKKAGYV 734

Query: 618 PDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLI 677
             T  VL+D++EE KE  L +HSEKLA+AYG++   PG  IR++KNLRVC +CH+A K I
Sbjct: 735 SATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILKIPPGRPIRVIKNLRVCRDCHTAFKCI 794

Query: 678 SKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           S I  R II RD NRFHHF+DG+CSC DYW
Sbjct: 795 SAIEGRLIILRDSNRFHHFRDGSCSCGDYW 824



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 151/332 (45%), Gaps = 28/332 (8%)

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
            + +++  YA NG L  A   F      D+ SY  L+        L D R LFDEMP++ 
Sbjct: 140 TYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVK- 198

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
                +  +   ++S+ A+ G + L      L       S     N ++  Y + G + +
Sbjct: 199 -----DSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVS----WNGMLAAYVRNGRIQE 249

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           AR+LF+S  + D ISWN ++ GY   S  +EA  +F +M Q ++    V++ +++   A 
Sbjct: 250 ARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDV----VSWNTMVSGYAR 305

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
            G +   + +      +   + +V  WT+++  YA+ G ++ A++VFD M  K   SWNA
Sbjct: 306 RGDMAEARRLF-----DVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNA 360

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
           M++        ++A  LF  M    +     ++  +L+    AG+LD  R  F  M Q  
Sbjct: 361 MMAAYVQRRMMEEAKELFDAMPCRNV----ASWNTMLTGYAQAGMLDEARAIFGMMPQKD 416

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
            +S     +  M+    + G  +E   L K M
Sbjct: 417 AVS-----WAAMLAAYSQIGFSEETLQLFKEM 443



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 147/340 (43%), Gaps = 56/340 (16%)

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC------ 256
           IT +   G + DA +LF  MP R      + ST  T+L+  A  G L             
Sbjct: 114 ITAHMRAGRVPDAERLFAAMPRR------STSTYNTMLAGYAANGRLPQALSFFRSIPRP 167

Query: 257 ------SLIEGHGLGSNLHVTNALID---------------MYSKCGDLVKARDLFESIE 295
                 +L+   G+ S+L    AL D                ++  G +  AR  F+   
Sbjct: 168 DSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAP 227

Query: 296 KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKW 355
           ++D +SWN M+  Y      +EA    R++  S  E + +++ +++        ++  + 
Sbjct: 228 EKDAVSWNGMLAAYVRNGRIQEA----RELFDSRTEWDAISWNALMAGYVQRSQIEEAQK 283

Query: 356 IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHG 415
           +      N     +V  W +++  YA+ G++  A ++FD    + + +W A++SG A +G
Sbjct: 284 MF-----NKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNG 338

Query: 416 KADKALSLFSRMIGEGLQPDD--ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQ 473
             ++A  +F  M      PD   +++  +++A     +++  ++ F+AM         + 
Sbjct: 339 MLEEAKRVFDAM------PDKNAVSWNAMMAAYVQRRMMEEAKELFDAM-----PCRNVA 387

Query: 474 HYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
            +  M+    +AG+ DEA A+   M  K DA  W ++L A
Sbjct: 388 SWNTMLTGYAQAGMLDEARAIFGMMPQK-DAVSWAAMLAA 426



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 133/320 (41%), Gaps = 53/320 (16%)

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N  I  + + G +  A  LF ++ +R   ++N M+ GY       +AL  FR + +    
Sbjct: 111 NRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPR---- 166

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDK--------------NHQKLNNVSL----- 372
           P+  ++ ++L A   LG       + A  D+              +H     VSL     
Sbjct: 167 PDSFSYNTLLHA---LGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYF 223

Query: 373 ----------WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALS 422
                     W  ++  Y + G I+ A ++FD        SWNA+++G     + ++A  
Sbjct: 224 DLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQK 283

Query: 423 LFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFN-AMIQDYKISPKLQHYGCMVDL 481
           +F++M     Q D +++  ++S     G +   R+ F+ A I+D      +  +  +V  
Sbjct: 284 MFNKMP----QRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRD------VFTWTAIVSG 333

Query: 482 LGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEP-ENPGA 540
             + G+ +EA+ +   M  K +A  W +++ A      +E     AK L +  P  N  +
Sbjct: 334 YAQNGMLEEAKRVFDAMPDK-NAVSWNAMMAAYVQRRMME----EAKELFDAMPCRNVAS 388

Query: 541 YVLLSNMYAGAGRWDDVATI 560
           +  +   YA AG  D+   I
Sbjct: 389 WNTMLTGYAQAGMLDEARAI 408


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 252/680 (37%), Positives = 386/680 (56%), Gaps = 48/680 (7%)

Query: 34  LALLSKCTNMQ---NIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           + LLS C   +    I QV +QIIK G        S+LI                     
Sbjct: 148 VTLLSGCNGHEMGNQITQVQTQIIKLGYD------SRLI--------------------- 180

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKI--SAISE 148
                 + N ++  +  S+   +A + +  M      P   +F F    CA I    I  
Sbjct: 181 ------VGNTLVDSYCKSNRLDLACQLFKEM------PEIDSFTFAAVLCANIGLDDIVL 228

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           G+QIH+ V+K     + FV  +L++ Y+++  +  AR +F++   +D VSY  +I+GYA 
Sbjct: 229 GQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAW 288

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
            G    A  LF E+      F   +    T+LS  ++    E+G  + +        S +
Sbjct: 289 DGKHKYAFDLFRELQFTA--FDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEI 346

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
            V N+L+DMY+KCG   +A  +F ++  R  + W  MI  Y     Y+E L LF +M Q+
Sbjct: 347 LVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQA 406

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
           ++  +  TF S+L A A + +L LGK +H++I K+   ++NV   ++L+D+YAKCG+IK 
Sbjct: 407 SVIADQATFASLLRASASIASLSLGKQLHSFIIKSG-FMSNVFSGSALLDVYAKCGSIKD 465

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A Q F  M  + + SWNAMIS  A +G+A+  L  F  M+  GLQPD ++F+GVLSAC+H
Sbjct: 466 AVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSH 525

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
           +GL++ G  +FN+M Q YK+ P+ +HY  +VD+L R+G F+EAE L+  M + PD  +W+
Sbjct: 526 SGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWS 585

Query: 509 SLLGACRVHGRLELGESVAKHLLELEP-ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
           S+L ACR+H   EL    A  L  +E   +   YV +SN+YA AG+W++V+ +   + D+
Sbjct: 586 SVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDR 645

Query: 568 GMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
           G+KK+P  S +E+    H F   D+ HPQ + I + +D +   +E+ G+ PDTS  L++ 
Sbjct: 646 GVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNE 705

Query: 628 DEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIA 687
           DE++K  +L +HSE+LAIA+ LIST  G+ I ++KNLR C +CH+A K+ISKI  REI  
Sbjct: 706 DEKFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITV 765

Query: 688 RDRNRFHHFKDGNCSCNDYW 707
           RD  RFHHF+DG CSC D+W
Sbjct: 766 RDSTRFHHFRDGFCSCGDFW 785



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 115/406 (28%), Positives = 172/406 (42%), Gaps = 77/406 (18%)

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           I A ++K G + D       +  + +NGEL  AR +F K   ++ VS   +I+GY   G 
Sbjct: 34  IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 93

Query: 212 LDDARQLFDEMPIRE---------------------ENFV--------PNESTVVTVLSA 242
           L +AR+LFD M  R                      E FV        P+  T VT+LS 
Sbjct: 94  LGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSG 153

Query: 243 CAHMGSLELGNWVCSL---IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV 299
           C      E+GN +  +   I   G  S L V N L+D Y K   L    DL         
Sbjct: 154 C---NGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRL----DL--------- 197

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALD--LGKWIH 357
                             A  LF++M     E +  TF +VL  CA +G  D  LG+ IH
Sbjct: 198 ------------------ACQLFKEM----PEIDSFTFAAVL--CANIGLDDIVLGQQIH 233

Query: 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA 417
           +++ K +  + NV +  +L+D Y+K  ++  A ++FD M  +   S+N +ISG A  GK 
Sbjct: 234 SFVIKTN-FVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKH 292

Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
             A  LF  +           F  +LS  ++    ++GRQ     I     S  L     
Sbjct: 293 KYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVG-NS 351

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELG 523
           +VD+  + G F+EAE +   +  +  A  WT+++ A    G  E G
Sbjct: 352 LVDMYAKCGKFEEAEMIFTNLTHRS-AVPWTAMISAYVQKGFYEEG 396


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 251/665 (37%), Positives = 392/665 (58%), Gaps = 22/665 (3%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEI---CAVSPFGDLSYALLVFETIREPNQVIWNNIIR 103
           + +H   I  GL    F  + L+++   CA  P  D ++   +F T+   + V WN ++ 
Sbjct: 30  RAIHRHAIHAGLQADLFVSTALLDMYVKCACLP--DAAH---IFATMPARDLVAWNAMLA 84

Query: 104 G--HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGL 161
           G  H       VA    ++M +    PN  T   +L   A+  A+++G  +HA+ ++  L
Sbjct: 85  GYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACL 144

Query: 162 ESDP----------FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
             +            + T+L++MYA+ G L  AR VF+    R+ V+++ALI G+     
Sbjct: 145 HPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSR 204

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
           +  A  LF  M  +   F+ + +++ + L ACA +  L +G  + +L+   G+ ++L   
Sbjct: 205 MTQAFLLFKAMLAQGLCFL-SPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAG 263

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N+L+ MY+K G + +A  LF+ +  +D +S++ ++ GY      +EA ++F++M   N+E
Sbjct: 264 NSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVE 323

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+  T +S++PAC++L AL  G+  H  +       +  S+  +LIDMYAKCG I  + Q
Sbjct: 324 PDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLA-SETSICNALIDMYAKCGRIDLSRQ 382

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VF+ M  + + SWN MI+G  +HG   +A +LF  M   G  PD +TF+ +LSAC+H+GL
Sbjct: 383 VFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGL 442

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           +  G+ +F+ M   Y ++P+++HY CMVDLL R G  DEA   +++M ++ D  +W +LL
Sbjct: 443 VIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALL 502

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
           GACRV+  ++LG+ V++ + EL PE  G +VLLSN+Y+ AGR+D+ A +R     +G KK
Sbjct: 503 GACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKK 562

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
            PGCS IE+   +H F+ GD+ HPQS  IY  LD I   ++K G+ PDTS VL D++EE 
Sbjct: 563 SPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEE 622

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           KE AL  HSEKLAIAYG++S     TI + KNLRVCG+CH+  K IS +  R II RD N
Sbjct: 623 KEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDAN 682

Query: 692 RFHHF 696
           RFHHF
Sbjct: 683 RFHHF 687



 Score =  209 bits (531), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 130/430 (30%), Positives = 218/430 (50%), Gaps = 29/430 (6%)

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           M+     PN YTFPF LK+C+ ++    G+ IH H +  GL++D FV T+L++MY +   
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
           L  A  +F     RD V++ A++ GYA  G    A      M ++     PN ST+V +L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNLH--------------VTNALIDMYSKCGDLVK 286
              A  G+L  G  V      + + + LH              +  AL+DMY+KCG L+ 
Sbjct: 121 PLLAQQGALAQGTSV----HAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLY 176

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN---IEPNDVTFLSVLPA 343
           AR +F+++  R+ ++W+ +IGG+   S   +A +LF+ ML      + P  +   S L A
Sbjct: 177 ARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRA 234

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
           CA L  L +G+ +HA + K+     +++   SL+ MYAK G I  A  +FD M  K   S
Sbjct: 235 CASLDHLRMGEQLHALLAKSGVH-ADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS 293

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
           ++A++SG   +G+A++A  +F +M    ++PD  T V ++ AC+H   L  GR    ++I
Sbjct: 294 YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI 353

Query: 464 QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELG 523
               ++ +      ++D+  + G  D +  +   M  + D   W +++    +HG   LG
Sbjct: 354 IR-GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIHG---LG 408

Query: 524 ESVAKHLLEL 533
           +      LE+
Sbjct: 409 KEATALFLEM 418


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 264/765 (34%), Positives = 418/765 (54%), Gaps = 101/765 (13%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           ++ S+  N  +++Q+H+QII   LH+  + ++ LI  C         Y  L+F +   PN
Sbjct: 6   SIASRVGNFSHLRQLHAQIIHNSLHHHNYWVALLINHC-TRLRAPPHYTHLLFNSTLNPN 64

Query: 95  QVIWNNIIRGHS------------------------------LSSSPVVAIKFYVRMILS 124
             ++ +++R +S                              + S+    I F+  ++  
Sbjct: 65  VFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNGGIGFHAHVLKL 124

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHV---------------------------- 156
           G   + +    ++   A++  I   +++   +                            
Sbjct: 125 GHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQW 184

Query: 157 -LKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDA 215
              +  E +    T+++  YA+  +LE+AR  F+    R  VS+ A+++GYA  G  ++ 
Sbjct: 185 LFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEV 244

Query: 216 RQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALI 275
            +LFDEM        P+E+T VTV+SAC+  G   L   +   +    +  N  V  AL+
Sbjct: 245 LRLFDEMV--NAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALL 302

Query: 276 DMYSKCG--------------------------------DLVKARDLFESIEKRDVISWN 303
           DMY+KCG                                +L  AR+LF ++  R+V++WN
Sbjct: 303 DMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWN 362

Query: 304 VMIGGYTHTSDYKEALMLFRQMLQSN-IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
            MI GY        A+ LF++M+ +  + P++VT +SV+ AC +LGAL+LG W+  ++ +
Sbjct: 363 SMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTE 422

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALS 422
           N  KL+ +S   ++I MY++CG+++ A++VF  M  + + S+N +ISG A HG   +A++
Sbjct: 423 NQIKLS-ISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAIN 481

Query: 423 LFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482
           L S M   G++PD +TF+GVL+AC+HAGLL+ GR+ F + I+D    P + HY CMVDLL
Sbjct: 482 LMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFES-IKD----PAIDHYACMVDLL 536

Query: 483 GRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV 542
           GR G  ++A+  ++ M M+P A ++ SLL A R+H ++ELGE  A  L ELEP+N G ++
Sbjct: 537 GRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFI 596

Query: 543 LLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYE 602
           LLSN+YA AGRW DV  IR  +   G+KK  G S +E G  +H+F+V D+ H +S  IY+
Sbjct: 597 LLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQ 656

Query: 603 MLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVK 662
           +L E+   + ++G++ D S VL D++EE KE  +  HSEKLAI Y L+ ++ G  IR+VK
Sbjct: 657 LLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVK 716

Query: 663 NLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           NLRVC +CH+A K+ISK+  R II RD NRFH F DG CSC DYW
Sbjct: 717 NLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 761


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 243/616 (39%), Positives = 370/616 (60%), Gaps = 20/616 (3%)

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
           P+ V + +++RG+        AI+ + +M       N  ++  +L        ++E +++
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFQQMPER----NHVSYTVLLGGLLDAGRVNEARRL 165

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
              +     + D    T++++ Y Q G +  AR +F++   R+ VS+TA+I+GYA  G +
Sbjct: 166 FDEMP----DRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEV 221

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           + AR+LF+ MP R      NE +   +L      G +E    + + +  H + +     N
Sbjct: 222 NLARKLFEVMPER------NEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAA----CN 271

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           A++  + + G +  A+ +FE + +RD  +W+ MI  Y       EAL  FR+ML   + P
Sbjct: 272 AMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRP 331

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N  + +S+L  CA L  LD G+ +HA + +    ++  ++ ++LI MY KCGN+  A++V
Sbjct: 332 NYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAV-SALITMYIKCGNLDKAKRV 390

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F     K +  WN+MI+G A HG  ++AL +F  M   G+ PD IT++G L+AC++ G +
Sbjct: 391 FHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKV 450

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
             GR+ FN+M  +  I P  +HY CMVDLLGR+GL +EA  L+K M ++PDA IW +L+G
Sbjct: 451 KEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMG 510

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           ACR+H   E+ E  AK LLELEP N G YVLLS++Y   GRW+D + +R  ++ + + K 
Sbjct: 511 ACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKS 570

Query: 573 PGCSSIEVGSVVHEFLVGDKV-HPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
           PGCS IE    VH F  GD + HP+   I  +L+++D LL +SG+  D S VL+D+DEE 
Sbjct: 571 PGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQ 630

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           K  +L +HSE+ A+AYGL+    G  IR++KNLRVCG+CHSA KLI+KI +REII RD N
Sbjct: 631 KSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDAN 690

Query: 692 RFHHFKDGNCSCNDYW 707
           RFHHFKDG CSC DYW
Sbjct: 691 RFHHFKDGFCSCRDYW 706



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 126/514 (24%), Positives = 216/514 (42%), Gaps = 101/514 (19%)

Query: 176 AQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNEST 235
           A+ G +E AR  F    LR   SY AL+ GY      D A  LF  MP R+   + + + 
Sbjct: 28  ARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRD---LASYNA 84

Query: 236 VVTVLS--------ACAHMGSLELGNWVC---SLIEG---HGLGSNL-----------HV 270
           +++ LS        A A + S+     V    SL+ G   HGL ++            HV
Sbjct: 85  LISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHV 144

Query: 271 T-NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           +   L+      G + +AR LF+ +  RDV++W  M+ GY       EA  LF +M + N
Sbjct: 145 SYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRN 204

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           +    V++ +++   A  G ++L + +   + +     N VS WT+++  Y + G+++ A
Sbjct: 205 V----VSWTAMISGYAQNGEVNLARKLFEVMPER----NEVS-WTAMLVGYIQAGHVEDA 255

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKAD------------------------------- 418
            ++F+ M    +A+ NAM+ G    G  D                               
Sbjct: 256 AELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLM 315

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478
           +ALS F  M+  G++P+  + + +L+ C    +LD GR+   AM++       +     +
Sbjct: 316 EALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLR-CSFDMDVFAVSAL 374

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK--HLLELEPE 536
           + +  + G  D+A+ +  T E K D  +W S++     HG   LGE      H + L   
Sbjct: 375 ITMYIKCGNLDKAKRVFHTFEPK-DIVMWNSMITGYAQHG---LGEQALGIFHDMRLAGM 430

Query: 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQ 596
           +P         Y GA          T  +  G  K       E   + +   V   + P 
Sbjct: 431 SPDGIT-----YIGA---------LTACSYTGKVK-------EGREIFNSMTVNSSIRPG 469

Query: 597 SKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           ++H   M+D    LL +SG V +  +++ +M  E
Sbjct: 470 AEHYSCMVD----LLGRSGLVEEAFDLIKNMPVE 499



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 131/259 (50%), Gaps = 6/259 (2%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G +  A  VFE + E +   W+ +I+ +  +   + A+  +  M+  G  PN  +   IL
Sbjct: 281 GMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISIL 340

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
             CA ++ +  G+++HA +L+   + D F  ++LI MY + G L+ A+ VF+    +D V
Sbjct: 341 TVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIV 400

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC- 256
            + ++ITGYA  G  + A  +F +M  R     P+  T +  L+AC++ G ++ G  +  
Sbjct: 401 MWNSMITGYAQHGLGEQALGIFHDM--RLAGMSPDGITYIGALTACSYTGKVKEGREIFN 458

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDY 315
           S+     +       + ++D+  + G + +A DL +++  + D + W  ++G      + 
Sbjct: 459 SMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNA 518

Query: 316 KEALMLFRQMLQSNIEPND 334
           + A    +++L+  +EP +
Sbjct: 519 EIAEFAAKKLLE--LEPGN 535



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 124/299 (41%), Gaps = 69/299 (23%)

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI- 330
           NA I   ++ G++  AR  FE++  R   S+N ++ GY        AL LFR+M   ++ 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 331 ----------------------------EPNDVTFLSVLPACAYLGAL-DLGKWIHAYID 361
                                        P+ V+F S+L      G L D  +      +
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 362 KNH-------------------QKL------NNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
           +NH                   ++L       +V  WT+++  Y + G I  A  +FD M
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 397 GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR 456
             + + SW AMISG A +G+ + A  LF  M     + +++++  +L     AG ++   
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMP----ERNEVSWTAMLVGYIQAGHVEDAA 256

Query: 457 QYFNAMIQDYKISPKLQHYGC--MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
           + FNAM       P+     C  M+   G+ G+ D A+ + + M  + D   W++++ A
Sbjct: 257 ELFNAM-------PEHPVAACNAMMVGFGQRGMVDAAKTVFEKM-CERDDGTWSAMIKA 307


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/605 (38%), Positives = 364/605 (60%), Gaps = 34/605 (5%)

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
           + L++CA+  +   GK++H H++K G++    +  +LINMY + G ++ A  +FN+   R
Sbjct: 8   YQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHR 67

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
           D +S+ +++T             +F  M  +++   P+      ++ ACA +G+++ G  
Sbjct: 68  DPISWASILTANNQANLPHLTLSMFPAM-FKQDGLQPDHYVFACLVKACAILGAMKQGKQ 126

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           V +      +  +  V ++L+DMY+KCG     R +F+SI  ++ ISW  MI GY  +  
Sbjct: 127 VHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGR 186

Query: 315 YKEALMLFRQMLQSN-------------------------------IEPNDVTFLS-VLP 342
             +A+ LF++M   N                               I+  D   LS ++ 
Sbjct: 187 KLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIG 246

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           A A L  L LGK IH  +     + +++ +  +L+DMYAKC ++ AA+++F  M  + + 
Sbjct: 247 ASANLAVLGLGKQIHCLVILLGYE-SSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIV 305

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           SW ++I G A HG A++ALSL++RM+  GL+P+++TFVG++ AC+H GL+  GR +FN+M
Sbjct: 306 SWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSM 365

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
           I+DY I+P LQHY C++DLL R+G  +EAE L+K M  KPD A W +LL AC  H    +
Sbjct: 366 IKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLI 425

Query: 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582
           G  VA HLL L+PE+P  Y+LLSN+YA A  W+ V+ +R  +    +KK PG S I +G 
Sbjct: 426 GIRVADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGK 485

Query: 583 VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEK 642
               FL G+  HP  + I+ +L+E+DA ++K G++PDTS VL+D++++ KE  L  HSE+
Sbjct: 486 ESQVFLAGETSHPAKEEIFGLLEELDAEMKKRGYIPDTSSVLHDLEQQEKERQLFWHSER 545

Query: 643 LAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCS 702
           LA+AYGL+   PG  + IVKNLRVCG+CH+  K IS I  REI+ RD NR+HHFKDG CS
Sbjct: 546 LAVAYGLLKGIPGMVLHIVKNLRVCGDCHTVLKFISIIVKREIVVRDANRYHHFKDGKCS 605

Query: 703 CNDYW 707
           CN++W
Sbjct: 606 CNNFW 610



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 229/422 (54%), Gaps = 36/422 (8%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K++H  IIKTG+   +   + LI +      G +  AL +F  +   + + W +I+  ++
Sbjct: 23  KKLHCHIIKTGIDQCKSLSNNLINM--YGKCGLIQDALNLFNQLPHRDPISWASILTANN 80

Query: 107 LSSSPVVAIKFYVRMI-LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
            ++ P + +  +  M    G  P+ Y F  ++K+CA + A+ +GKQ+HA  +   +  D 
Sbjct: 81  QANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDD 140

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
            V +SL++MYA+ G  +  R+VF+  S ++++S+TA+I+GYA  G   DA QLF +MP++
Sbjct: 141 VVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVK 200

Query: 226 E------------------ENF------------VPNESTVVTVLSACAHMGSLELGNWV 255
                              ++F            + +   + +++ A A++  L LG  +
Sbjct: 201 NLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQI 260

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
             L+   G  S+L V+NAL+DMY+KC D++ A+ +F  + +RD++SW  +I G       
Sbjct: 261 HCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLA 320

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
           +EAL L+ +ML + ++PN+VTF+ ++ AC+++G +  G++    + K++    ++  +T 
Sbjct: 321 EEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTC 380

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKT-LASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
           L+D+ ++ G+++ AE +   M +K   A+W A++S    H      + +   ++   L+P
Sbjct: 381 LLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLIGIRVADHLL--SLKP 438

Query: 435 DD 436
           +D
Sbjct: 439 ED 440



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 153/303 (50%), Gaps = 38/303 (12%)

Query: 43  MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNII 102
           M+  KQVH+  I + + +     S L+++ A     D+    +VF++I   N + W  +I
Sbjct: 121 MKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGR--VVFDSISSKNSISWTAMI 178

Query: 103 RGHSLSSSPVVAIKFYVRM----------ILSGFVPNT------YTF------------P 134
            G++ S   + AI+ + +M          ++SG V +       Y F            P
Sbjct: 179 SGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDP 238

Query: 135 FILKS----CAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK 190
           FIL S     A ++ +  GKQIH  V+ LG ES  FV  +L++MYA+  ++ +A+ +F +
Sbjct: 239 FILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGR 298

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250
              RD VS+T++I G A  G  ++A  L++ M        PNE T V ++ AC+H+G + 
Sbjct: 299 MVQRDIVSWTSIIVGTAQHGLAEEALSLYNRM--LSTGLKPNEVTFVGLIYACSHVGLVS 356

Query: 251 LGNWVC-SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGG 308
            G +   S+I+ +G+  +L     L+D+ S+ G L +A +L +++  K D  +W  ++  
Sbjct: 357 KGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSA 416

Query: 309 YTH 311
             H
Sbjct: 417 CNH 419



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 100/195 (51%), Gaps = 2/195 (1%)

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
           S +V  L ACA   S  +G  +   I   G+     ++N LI+MY KCG +  A +LF  
Sbjct: 4   SHLVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQ 63

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVLPACAYLGALDL 352
           +  RD ISW  ++      +     L +F  M  Q  ++P+   F  ++ ACA LGA+  
Sbjct: 64  LPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQ 123

Query: 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLA 412
           GK +HA    +    ++V + +SL+DMYAKCG       VFD +  K   SW AMISG A
Sbjct: 124 GKQVHATFIVSPVSDDDV-VKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYA 182

Query: 413 MHGKADKALSLFSRM 427
             G+   A+ LF +M
Sbjct: 183 QSGRKLDAIQLFQKM 197


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 266/666 (39%), Positives = 389/666 (58%), Gaps = 10/666 (1%)

Query: 47   KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
            ++VH  I++TGL + + ALS  + +   +  G +  A  VF  +   ++V WN II    
Sbjct: 394  REVHGHILRTGLIDLKIALSNGL-VNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLD 452

Query: 107  LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
             +     A+  Y  M      P+ +     L SCA +  ++ G+Q+H   +K GL+ D  
Sbjct: 453  QNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTS 512

Query: 167  VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALI-TGYASRGYLDDARQLFDEMPIR 225
            V  +L+ MY   G    +  +FN  +  D VS+ +++    +S     ++ ++F  M   
Sbjct: 513  VSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNM--M 570

Query: 226  EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
                 PN+ T V +LSA + +  LELG  V +++  HG   +  V NAL+  Y+K GD+ 
Sbjct: 571  RSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMD 630

Query: 286  KARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
                LF S+  +RD +SWN MI GY +    +E +     M+ SN   +  TF  VL AC
Sbjct: 631  SCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNAC 690

Query: 345  AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
            A + AL+ G  +HA+  ++ Q  ++V + ++L+DMY+KCG I  A +VF+ M  K   SW
Sbjct: 691  ASVAALERGMEMHAFGIRS-QLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSW 749

Query: 405  NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
            N+MISG A HG  +KAL +F  M   G  PD +TFV VLSAC+HAGL+D G  YF  M++
Sbjct: 750  NSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYFE-MME 808

Query: 465  DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH---GRLE 521
            D+ I P ++HY C++DLLGRAG   + +  +  M MKP+  IW ++L ACR      R++
Sbjct: 809  DHGILPHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRID 868

Query: 522  LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
            LG+  ++ LLELEP+NP  YVL SN YA  GRW+D A  R  +    MKK  G S + +G
Sbjct: 869  LGKEASRMLLELEPQNPVNYVLASNFYAATGRWEDTAKARAAMGGAAMKKEAGQSWVTLG 928

Query: 582  SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
              VH F+ GD+ HP +K IYE L+ +   ++ +G+VP T   LYD++EE KE  LS+HSE
Sbjct: 929  DGVHTFIAGDRSHPNTKEIYEKLNFLIQKIKNAGYVPMTEFALYDLEEENKEELLSYHSE 988

Query: 642  KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
            KLA+A+ L  +     IRI+KNLRVCG+CH+A + IS+I  R+II RD  RFHHF+DG C
Sbjct: 989  KLAVAFVLTRSSSDVPIRIMKNLRVCGDCHTAFRYISQIVCRQIILRDSIRFHHFEDGKC 1048

Query: 702  SCNDYW 707
            SC DYW
Sbjct: 1049 SCGDYW 1054



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 135/511 (26%), Positives = 248/511 (48%), Gaps = 26/511 (5%)

Query: 18  PPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF 77
           PPS  PP   +     L LL +       +++H +++K GL +  F  + L+ + A    
Sbjct: 50  PPSRSPPP--VHPHAGL-LLPRRGEEAAPERLHLELVKRGLTHDLFLSNHLVNLYAKG-- 104

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG---FVPNTYTFP 134
             L+ A  VF+ + E N V W  ++ G+ LS     A + +  M+  G     P  +TF 
Sbjct: 105 SRLAAARQVFDGMLERNAVSWTCLVSGYVLSGITDEAFRVFKAMLWEGSEFSRPTPFTFG 164

Query: 135 FILKSC--AKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN--GELESARLVFNK 190
            +L++C  A    ++   Q+H  V K    S+  V  +LI+MY     G    A+ VF+ 
Sbjct: 165 SVLRACQDAGPDLLAFAVQVHGLVSKTIYASNTTVCNALISMYGNCSVGLPLQAQQVFDT 224

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV---PNESTVVTVLSACAHMG 247
           + +RD +++ AL++ YA +GY+     LF  M + +++ +   PNE T  ++++A + + 
Sbjct: 225 TPVRDLITWNALMSVYAKKGYVVSTFTLFMAM-LHDDSAIELRPNEHTFGSLITATS-LS 282

Query: 248 SLELG--NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVM 305
           S   G  + V + +   G  S+L+V +AL+  +++ G L +A+D+F ++++R+ ++ N +
Sbjct: 283 SCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKERNAVTLNGL 342

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG----ALDLGKWIHAYID 361
           I G       +EA+ +F     S +   D TF+ +L A A        L  G+ +H +I 
Sbjct: 343 IVGLVKQHCSEEAVGIFMGTRDSFVVNTD-TFVVLLSAVAEFSIPEDGLMRGREVHGHIL 401

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421
           +       ++L   L++MYAKCG I  A +VF  +  +   SWN +IS L  +G  + A+
Sbjct: 402 RTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLDQNGFCEGAM 461

Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481
             +  M    + P +   +  LS+C    LL  G+Q     ++ + +         +V +
Sbjct: 462 MNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVK-WGLDLDTSVSNALVKM 520

Query: 482 LGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
            G  G   E+  +  +M  + D   W S++G
Sbjct: 521 YGDCGARSESWEIFNSMA-EHDIVSWNSIMG 550



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 185/389 (47%), Gaps = 23/389 (5%)

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           +++H  ++K GL  D F+   L+N+YA+   L +AR VF+    R+AVS+T L++GY   
Sbjct: 76  ERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLS 135

Query: 210 GYLDDARQLFDEMPIREENFV-PNESTVVTVLSACAHMGS--LELGNWVCSLIEGHGLGS 266
           G  D+A ++F  M      F  P   T  +VL AC   G   L     V  L+      S
Sbjct: 136 GITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYAS 195

Query: 267 NLHVTNALIDMYSKC--GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
           N  V NALI MY  C  G  ++A+ +F++   RD+I+WN ++  Y           LF  
Sbjct: 196 NTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMA 255

Query: 325 MLQSN----IEPNDVTFLSVLPACAY----LGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           ML  +    + PN+ TF S++ A +      G LD    + A + K+    +++ + ++L
Sbjct: 256 MLHDDSAIELRPNEHTFGSLITATSLSSCSSGVLD---QVFARVLKSGSS-SDLYVGSAL 311

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           +  +A+ G +  A+ +F  +  +   + N +I GL     +++A+ +F       +   D
Sbjct: 312 VSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFVVNTD 371

Query: 437 ITFVGVLSACNHAGL----LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
            TFV +LSA     +    L  GR+    +++   I  K+     +V++  + G  D+A 
Sbjct: 372 -TFVVLLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKAS 430

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
            + + +  + D   W +++     +G  E
Sbjct: 431 RVFRLLCAR-DRVSWNTIISVLDQNGFCE 458


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 249/677 (36%), Positives = 400/677 (59%), Gaps = 10/677 (1%)

Query: 35  ALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ++L    N+  +KQ   +H   +K+G+++     + L+ +     F   + A  VF+ + 
Sbjct: 212 SVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAM--YLKFSRPTDARRVFDEMV 269

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             + V +N +I G+        ++K ++   L  F P+  T   +L +C  +  +S  K 
Sbjct: 270 VRDSVTYNTMICGYLKLEMVEESVKMFLEN-LDQFKPDILTVTSVLCACGHLRDLSLAKY 328

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           I+ ++L+ G   +  V   LI++YA+ G++ +AR VFN    +D VS+ ++I+GY   G 
Sbjct: 329 IYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGD 388

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
           L +A +LF  M I EE    +  T + ++S    +  L+ G  + S     G+  +L V+
Sbjct: 389 LMEAMKLFKMMMIMEEQ--ADHITYLMLISLSTRLADLKFGKGLHSNGIKSGIYIDLSVS 446

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           NALIDMY+KCG++  +  +F S+   D ++WN +I       D+   L +  QM ++ + 
Sbjct: 447 NALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVV 506

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+  TFL  LP CA L A  LGK IH  + +   + + + +  +LI+MY+KCG ++++ +
Sbjct: 507 PDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYE-SELQIGNALIEMYSKCGCLESSFR 565

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VF+ M  + + +W  MI    M+G+ +KAL  F  M   G+ PD + F+ ++ AC+H+GL
Sbjct: 566 VFERMSRRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACSHSGL 625

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           ++ G   F  M   YKI P ++HY C+VDLL R+    +AE  ++ M ++PDA+IW S+L
Sbjct: 626 VEKGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIEPDASIWASVL 685

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
            ACR  G +E  E V++ ++EL P++PG  +L SN YA   +WD V+ IR  + DK +KK
Sbjct: 686 RACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSVRDKHIKK 745

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM-DEE 630
            PG S IE+G  VH F  GD   PQS+ I++ L+ + +L+ K G++PD+ EV  ++ +EE
Sbjct: 746 NPGYSWIEIGKKVHVFCSGDDSAPQSEAIHKSLEILYSLMAKEGYIPDSREVSQNLEEEE 805

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            K   +  HSE+LAIA+GL++T+PGT ++++KNLRVC +CH  TKLISKI  REI+ RD 
Sbjct: 806 EKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCSDCHEVTKLISKIVGREILVRDA 865

Query: 691 NRFHHFKDGNCSCNDYW 707
           NRFH FKDG CSC D W
Sbjct: 866 NRFHLFKDGICSCKDRW 882



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 156/508 (30%), Positives = 267/508 (52%), Gaps = 13/508 (2%)

Query: 28  LQNQPSLALLSKC----TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYA 83
           +Q + S A +S+     +N+  ++++H+ +I  GL  + F   KLI+    S F   + +
Sbjct: 1   MQTRVSSAFISRALSSSSNLNELRRIHALVISLGLDGSDFFSGKLID--KYSHFRAPASS 58

Query: 84  LLVFETIREPNQV-IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           L VF  +     V IWN+IIR  S +     A++FY ++  S   P+ YTFP ++K+CA 
Sbjct: 59  LSVFRRVSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAG 118

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
           +     G  ++  +L++G ESD +V  +L++MY++ G L  AR VF++  +RD VS+ +L
Sbjct: 119 LFDAEMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSL 178

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
           I+GY+S GY ++A +++ E+  R    VP+  TV +VL A A++  ++ G  +       
Sbjct: 179 ISGYSSHGYYEEALEIYHEL--RNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKS 236

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
           G+ S   V N L+ MY K      AR +F+ +  RD +++N MI GY      +E++ +F
Sbjct: 237 GVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMF 296

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
            + L    +P+ +T  SVL AC +L  L L K+I+ Y+ +    L + ++   LID+YAK
Sbjct: 297 LENLD-QFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLES-TVKNILIDVYAK 354

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
           CG++  A  VF+ M  K   SWN++ISG    G   +A+ LF  M+    Q D IT++ +
Sbjct: 355 CGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLML 414

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
           +S       L  G+   +  I+   I   L     ++D+  + G   ++  +  +M    
Sbjct: 415 ISLSTRLADLKFGKGLHSNGIKS-GIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMG-TL 472

Query: 503 DAAIWTSLLGACRVHGRLELGESVAKHL 530
           D   W +++ AC   G    G  V   +
Sbjct: 473 DTVTWNTVISACVRFGDFATGLQVTTQM 500



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 213/405 (52%), Gaps = 11/405 (2%)

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK-SSL 193
           FI ++ +  S ++E ++IHA V+ LGL+   F    LI+ Y+      S+  VF + S  
Sbjct: 9   FISRALSSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPA 68

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
           ++   + ++I  ++  G+   A + + ++  RE    P++ T  +V+ ACA +   E+G+
Sbjct: 69  KNVYIWNSIIRAFSKNGWFPKALEFYGKL--RESKVSPDKYTFPSVIKACAGLFDAEMGD 126

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTS 313
            V   I   G  S+L+V NAL+DMYS+ G L +AR +F+ +  RD++SWN +I GY+   
Sbjct: 127 LVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHG 186

Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
            Y+EAL ++ ++  S I P+  T  SVLPA A L  +  G+ +H +  K+   +N+VS+ 
Sbjct: 187 YYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKS--GVNSVSVV 244

Query: 374 TS-LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
            + L+ MY K      A +VFD M  +   ++N MI G       ++++ +F   + +  
Sbjct: 245 NNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLENLDQ-F 303

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ-DYKISPKLQHYGCMVDLLGRAGLFDEA 491
           +PD +T   VL AC H   L + +  +N M++  + +   +++   ++D+  + G    A
Sbjct: 304 KPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKN--ILIDVYAKCGDMITA 361

Query: 492 EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536
             +  +ME K D   W S++      G L     + K ++ +E +
Sbjct: 362 RDVFNSMECK-DTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQ 405


>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
          Length = 863

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 257/659 (38%), Positives = 389/659 (59%), Gaps = 8/659 (1%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           ++VH+ +++ G       L+ L+ + A    GD+  A  VF+++   + + WN +I GH 
Sbjct: 209 REVHAHVLRFGFGEEVDVLNALMTMYAKC--GDVMAARKVFDSMTVMDCISWNAMIAGHF 266

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +      ++ ++ M+     PN  T   +  +   +S ++  K++H   +K G   D  
Sbjct: 267 ENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVKRGFAGDVA 326

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
              SLI MYA  G +  AR VF++   RDA+++TA+I+GY   G+ D A +++  M +  
Sbjct: 327 FCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEV-- 384

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
            N  P++ T+ + L+ACA +GSL++G  +  L E  G  S + VTNA+++MY+K   + K
Sbjct: 385 NNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAKSKRIDK 444

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A ++F+ + ++DV+SW+ MI G+       EAL  FR ML ++++PN VTF++ L ACA 
Sbjct: 445 AIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHML-ADVKPNSVTFIAALAACAA 503

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
            GAL  GK IHA++ +   +     L  +LID+Y KCG    A   F   G K + SWN 
Sbjct: 504 TGALRSGKEIHAHVLRCGIEYEGY-LPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNI 562

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
           MI+G   HG  D ALS F++M+  G  PD++TFV +L AC+  G++  G + F++M + Y
Sbjct: 563 MIAGFVAHGHGDTALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTEKY 622

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
            I P L+HY CMVDLL RAG   EA   +  M + PDAA+W +LL  CR+H  +ELGE  
Sbjct: 623 SIVPNLKHYACMVDLLSRAGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELA 682

Query: 527 AKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHE 586
           AK++L LEP + G +VLL ++YA A  WD +A +R  + +KG+    GCS +EV  VVH 
Sbjct: 683 AKYVLALEPNDAGYHVLLCDLYADACLWDKLARVRKTMREKGLDHDSGCSWVEVKGVVHA 742

Query: 587 FLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIA 646
           FL  D+ HPQ + I  +L+ I   ++ SG+ P  S      DE  K+     HSE+LA+A
Sbjct: 743 FLTDDESHPQIREINTVLEGIYERMKASGYAPVESHC--PEDEVLKDDIFCGHSERLAVA 800

Query: 647 YGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCND 705
           +GLI+T PGT+I + KN   C +CH   K+IS I  R+II RD  + HHFKDG+CSC D
Sbjct: 801 FGLINTTPGTSISVTKNQYTCQSCHRILKMISNIVRRDIIVRDSKQLHHFKDGSCSCGD 859



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 111/364 (30%), Positives = 200/364 (54%), Gaps = 4/364 (1%)

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
           FG+  +A  VF  + E +   WN ++ G+  S     A+  Y RM+ +G  P+ YTFP +
Sbjct: 136 FGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVRPDVYTFPCV 195

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L+SC  +     G+++HAHVL+ G   +  V  +L+ MYA+ G++ +AR VF+  ++ D 
Sbjct: 196 LRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVMDC 255

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           +S+ A+I G+   G  +   +LF  + +  +   PN  T+ +V  A   +  +     + 
Sbjct: 256 ISWNAMIAGHFENGECNAGLELF--LTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMH 313

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
            L    G   ++   N+LI MY+  G + +AR +F  ++ RD ++W  MI GY       
Sbjct: 314 GLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPD 373

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           +AL ++  M  +N+ P+D+T  S L ACA LG+LD+G  +H  + ++   ++ + +  ++
Sbjct: 374 KALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHE-LAESKGFISYIVVTNAI 432

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           ++MYAK   I  A +VF  M  K + SW++MI+G   + +  +AL  F  M+ + ++P+ 
Sbjct: 433 LEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLAD-VKPNS 491

Query: 437 ITFV 440
           +TF+
Sbjct: 492 VTFI 495



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/419 (29%), Positives = 194/419 (46%), Gaps = 22/419 (5%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHV--------LKLGLESDPFVHTSLINMYAQNG 179
           P+   +  + + C    A+  G +  AH         L+LG         ++++M  + G
Sbjct: 86  PDEDAYVALFRLCEWRRAVEPGLRACAHADDRHAWFGLRLG--------NAMLSMLVRFG 137

Query: 180 ELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTV 239
           E   A  VF K   RD  S+  ++ GY   G LD+A  L+  M        P+  T   V
Sbjct: 138 ETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRM--MWAGVRPDVYTFPCV 195

Query: 240 LSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV 299
           L +C  +    +G  V + +   G G  + V NAL+ MY+KCGD++ AR +F+S+   D 
Sbjct: 196 LRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVMDC 255

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
           ISWN MI G+    +    L LF  ML   ++PN +T  SV  A   L  +   K +H  
Sbjct: 256 ISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGL 315

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADK 419
             K      +V+   SLI MYA  G ++ A  VF  M  +   +W AMISG   +G  DK
Sbjct: 316 AVKRGFA-GDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDK 374

Query: 420 ALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479
           AL +++ M    + PDDIT    L+AC   G LD+G +  + + +       +     ++
Sbjct: 375 ALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVK-LHELAESKGFISYIVVTNAIL 433

Query: 480 DLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL-GACRVHGRLELGESVAKHLLELEPEN 537
           ++  ++   D+A  + K M  K D   W+S++ G C  H   E        L +++P +
Sbjct: 434 EMYAKSKRIDKAIEVFKCMHEK-DVVSWSSMIAGFCFNHRNFEALYYFRHMLADVKPNS 491


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 251/609 (41%), Positives = 363/609 (59%), Gaps = 24/609 (3%)

Query: 100 NIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKL 159
           + +R   L S+  V  K  VR         T T+  +L    K++    GK   AH L  
Sbjct: 82  SFVRACDLESARNVFEKMSVR--------TTVTWNTMLSGYTKVA----GKVKEAHELFD 129

Query: 160 GL-ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQL 218
            + E D   +  ++  Y ++  +E+A   FNK  ++D  S+  LI+G+A  G +  A  L
Sbjct: 130 KIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDL 189

Query: 219 FDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMY 278
           F  MP  E+N V    +   ++S     G LE       L +  G+ S + V  A++  Y
Sbjct: 190 FSVMP--EKNGV----SWSAMISGYVEHGDLEAAE---ELYKNVGMKSVV-VETAMLTGY 239

Query: 279 SKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
            K G +  A  +F+ +  +++++WN MI GY      ++ L +F+ M++S + PN ++  
Sbjct: 240 MKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLS 299

Query: 339 SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
           SVL  C+ L AL LG+ +H  + K+    +  +  TSLI MY KCG++ +A ++F  M  
Sbjct: 300 SVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTAC-TSLISMYCKCGDLDSAWKLFLEMPR 358

Query: 399 KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQY 458
           K + SWNAMISG A HG   KAL LF +M    ++PD ITFV V+ ACNHAG +D+G QY
Sbjct: 359 KDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQY 418

Query: 459 FNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           F +M +++ I  K  HY C++DLLGRAG  DEA +L+K M  KP AAI+ +LLGACR+H 
Sbjct: 419 FKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHK 478

Query: 519 RLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSI 578
            L+L E  A++LL L+P +   YV L+N+YA   +WD VA +R  + +  + K+PG S I
Sbjct: 479 NLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWI 538

Query: 579 EVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSH 638
           E+ SV HEF   D++HP+   I++ L+E+D  ++ +G+VPD    L+D++EE KE  L  
Sbjct: 539 EIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLW 598

Query: 639 HSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKD 698
           HSEKLAIA+GL+ T PGT IR+ KNLRVCG+CH A K IS I  REII RD  RFHHF++
Sbjct: 599 HSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRN 658

Query: 699 GNCSCNDYW 707
           G CSC DYW
Sbjct: 659 GFCSCGDYW 667



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 129/262 (49%), Gaps = 6/262 (2%)

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
           FG +  A  +F+ +   N V WN++I G+  +      +K +  MI S   PN  +   +
Sbjct: 242 FGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSV 301

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L  C+ +SA+  G+Q+H  V K  L  D    TSLI+MY + G+L+SA  +F +   +D 
Sbjct: 302 LLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDV 361

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWV 255
           +S+ A+I+GYA  G    A  LFD+M  R     P+  T V V+ AC H G ++LG  + 
Sbjct: 362 ISWNAMISGYAQHGAGRKALHLFDKM--RNGTMKPDWITFVAVILACNHAGFVDLGVQYF 419

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSD 314
            S+ +  G+ +       +ID+  + G L +A  L + +  K     +  ++G      +
Sbjct: 420 KSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKN 479

Query: 315 YKEALMLFRQMLQSNIEPNDVT 336
              A    R +L  N++P   T
Sbjct: 480 LDLAEFAARNLL--NLDPTSAT 499



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 134/327 (40%), Gaps = 72/327 (22%)

Query: 258 LIEGHGLGSNLHVT--------NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309
           L+  + +  NLHV         N  I  + +  DL  AR++FE +  R  ++WN M+ GY
Sbjct: 55  LVSPNNVTPNLHVDTASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGY 114

Query: 310 THTS-DYKEALMLFRQMLQSNIEPNDVTF----------LSVLPACAYLGAL---DLGKW 355
           T  +   KEA  LF ++     EP+ V++            V  A A+   +   D+  W
Sbjct: 115 TKVAGKVKEAHELFDKI----PEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASW 170

Query: 356 ----------------------------------IHAYIDKNHQK----------LNNVS 371
                                             I  Y++    +          + +V 
Sbjct: 171 NTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVV 230

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
           + T+++  Y K G ++ AE++F  M  K L +WN+MI+G   + +A+  L +F  MI   
Sbjct: 231 VETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESR 290

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
           ++P+ ++   VL  C++   L +GRQ  + ++    +S        ++ +  + G  D A
Sbjct: 291 VRPNPLSLSSVLLGCSNLSALPLGRQ-MHQLVSKSPLSKDTTACTSLISMYCKCGDLDSA 349

Query: 492 EALLKTMEMKPDAAIWTSLLGACRVHG 518
             L   M  K D   W +++     HG
Sbjct: 350 WKLFLEMPRK-DVISWNAMISGYAQHG 375


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 252/668 (37%), Positives = 370/668 (55%), Gaps = 76/668 (11%)

Query: 43  MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLS-YALLVFETIREPNQVIWNNI 101
           +  IKQ H++I+  GL N     S L+   A+S     S YAL ++ +I  P     NN+
Sbjct: 44  ITQIKQAHARILVLGLANDGRITSHLLAFLAISSSSLPSDYALSIYNSISHPTVFATNNM 103

Query: 102 IRGHSLSSSPVVAIKFYVRMILSGFV--PNTYTFPFILKSCAKISAISEGKQIHAHVLKL 159
           IR       P  +I  Y  M  S FV  PN +T  F+L++C+   AI EG Q+  HV+KL
Sbjct: 104 IRCFVKGDLPRHSISLYSHMCRS-FVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKL 162

Query: 160 GLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLF 219
           G   D FV                                 ALI  Y +   ++ A+Q+F
Sbjct: 163 GFVKDVFVRN-------------------------------ALIHLYCTCCRVESAKQVF 191

Query: 220 DEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYS 279
           DE        VP+   VV+               W                 N++I  + 
Sbjct: 192 DE--------VPSSRDVVS---------------W-----------------NSMIVGFV 211

Query: 280 KCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS 339
           + G +  A+ LF  + ++DVISW  +I G     + ++AL  F+++ +  + PN+   +S
Sbjct: 212 RLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVS 271

Query: 340 VLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK 399
           +L A A LG L+ GK IH+ I  + +     SL T+L+DMYAKCG I  +  +FD M  K
Sbjct: 272 LLAAAAQLGTLEYGKRIHS-IANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEK 330

Query: 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF 459
              SWN MI GLA HG   +AL+LF + + +G  P ++TF+GVL+AC+ AGL+  G+ +F
Sbjct: 331 DKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFF 390

Query: 460 NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
             M   Y I P+++HYGCMVDLL RAG   +A  ++  M   PD  +W S+LG+C+VHG 
Sbjct: 391 KLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGF 450

Query: 520 LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIE 579
           +ELGE +   L++++P + G YV L+ ++A   +W+DV+ +R  + ++   K+ G S IE
Sbjct: 451 IELGEEIGNKLIQMDPTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIE 510

Query: 580 VGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHH 639
               VH F+ GDK H ++  IY+ML+ +   +  +G+  + S VL+D++EE KE A+  H
Sbjct: 511 AEGRVHRFVAGDKEHERTTEIYKMLEIMGVRIAAAGYSANVSSVLHDIEEEEKENAIKEH 570

Query: 640 SEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDG 699
           SE+LAIA+GL+ TK G  IRI+KNLRVCG+CH  +K+IS +F REII RD +RFHHFK G
Sbjct: 571 SERLAIAFGLLVTKDGDCIRIIKNLRVCGDCHEVSKIISLVFEREIIVRDGSRFHHFKKG 630

Query: 700 NCSCNDYW 707
            CSC DYW
Sbjct: 631 ICSCQDYW 638


>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 770

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 256/699 (36%), Positives = 395/699 (56%), Gaps = 28/699 (4%)

Query: 28  LQNQPSLALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYAL 84
           +Q+   + LL +C    ++   K +H  ++KTG     F  + L+ +      G+   A 
Sbjct: 76  VQSAMYVPLLHRCIETGSLGGAKALHGHMVKTGTIVDIFVATSLVNVYMRC--GNSQDAR 133

Query: 85  LVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS 144
            +F+ + E N V W  +I G++L+S PV+A++ +V M+  G  P+ YT   +L +C    
Sbjct: 134 NLFDEMPEKNVVTWTALITGYTLNSQPVLALEVFVEMLKLGRYPSDYTLGGMLSACVASH 193

Query: 145 AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
            I  GKQ+H + +K G  S   +  SL  +Y ++G LES    F +   ++ +++T +I+
Sbjct: 194 NIDLGKQVHGYTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFKRIPDKNVITWTTMIS 253

Query: 205 GYAS-RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG 263
             A    Y +    LF +M   E   +PNE T+ +V+S C     + LG  V       G
Sbjct: 254 ACAEDENYTELGLNLFLDMLKGE--VMPNEFTLTSVMSLCGTSLDMNLGKQVQGFCFKIG 311

Query: 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK------- 316
             +NL V N+ + +Y + G+  +A  LFE +E   VI+WN MI G+    D         
Sbjct: 312 CATNLPVKNSTMYLYLRKGETEEAMRLFEEMEDNSVITWNAMISGFAQIMDSAKDDLHAR 371

Query: 317 ----EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
               +AL +FR +++S ++P+  TF S+L  C+ + AL+ G+ IHA   K    L++V +
Sbjct: 372 SRGFQALKIFRDLVRSAMKPDLFTFSSILSVCSTMMALEQGEQIHAQTIKT-GFLSDVVV 430

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
            ++L++MY KCG I+ A + F  M  +TL +W +MISG + HG+   A+ LF  MI  G 
Sbjct: 431 NSALVNMYNKCGCIEYATKAFVEMPTRTLVTWTSMISGYSQHGRPHDAIQLFEDMILAGA 490

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
           +P++ITFV +LSAC++AGL++   +YF+ M  +Y I P + HYGCM+D+  R G  D+A 
Sbjct: 491 KPNEITFVSLLSACSYAGLVEEAMRYFDMMQNEYHIEPLMDHYGCMIDMFVRLGRLDDAY 550

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552
           A +K    +P+ AIW+SL+  CR HG +EL    A  LLEL+P+    YVLL NMY   G
Sbjct: 551 AFIKRKGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLELKPKVVETYVLLLNMYISTG 610

Query: 553 RWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE 612
           RW DVA +R     + +  +   S I +   V+ F   D+ HPQS  +Y++L   + LLE
Sbjct: 611 RWRDVARVRKLSKHEDLGILRDRSWITIRDKVYFFKADDRSHPQSTELYQLL---ETLLE 667

Query: 613 KS---GFVPDTSEVLYDMDEEWK--EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVC 667
           K+   G+ P  +  LYD +E+ K   G+L HHSE+LA+A GL+   PG T+RI KN+ +C
Sbjct: 668 KAKAIGYEPYQNTELYDSEEDGKPAAGSLKHHSERLAVALGLLKAPPGVTVRITKNITMC 727

Query: 668 GNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDY 706
            +CHS+ K  S + NREI+ RD  R H FKDG CSC D+
Sbjct: 728 RDCHSSIKFFSLLANREIVVRDSKRLHKFKDGRCSCGDF 766


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/463 (47%), Positives = 311/463 (67%), Gaps = 2/463 (0%)

Query: 246 MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVM 305
           M  + LG  + S++   G GS ++V N+L+ +Y+ CGD+  A  +F+ + ++D+++WN +
Sbjct: 1   MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 60

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365
           I G+      +EAL L+ +M    I+P+  T +S+L ACA +GAL LGK +H Y+ K   
Sbjct: 61  INGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGL 120

Query: 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
              N+     L+D+YA+CG ++ A+ +FD M  K   SW ++I GLA++G   +A+ LF 
Sbjct: 121 T-RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFK 179

Query: 426 RMIG-EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484
            M   EGL P +ITFVG+L AC+H G++  G +YF  M ++YKI P+++H+GCMVDLL R
Sbjct: 180 YMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLAR 239

Query: 485 AGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL 544
           AG   +A   +K+M M+P+  IW +LLGAC VHG  +L E     +L+LEP + G YVLL
Sbjct: 240 AGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLL 299

Query: 545 SNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEML 604
           SNMYA   RW DV  IR ++   G+KKVPG S +EVG+ VHEFL+GDK HPQS  IY  L
Sbjct: 300 SNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKL 359

Query: 605 DEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNL 664
            E+   L   G+VP  S V  D++EE KE A+ +HSEK+AIA+ LIST   + I +VKNL
Sbjct: 360 KEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNL 419

Query: 665 RVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           RVC +CH A KL+SK++NREI+ RDR+RFHHFK+G+CSC DYW
Sbjct: 420 RVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 462



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 163/289 (56%), Gaps = 6/289 (2%)

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           G+ IH+ V++ G  S  +V  SL+++YA  G++ SA  VF+K   +D V++ ++I G+A 
Sbjct: 7   GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 66

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
            G  ++A  L+ EM    +   P+  T+V++LSACA +G+L LG  V   +   GL  NL
Sbjct: 67  NGKPEEALALYTEM--NSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNL 124

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
           H +N L+D+Y++CG + +A+ LF+ +  ++ +SW  +I G       KEA+ LF+ M  +
Sbjct: 125 HSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMEST 184

Query: 329 N-IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
             + P ++TF+ +L AC++ G +  G      + + ++    +  +  ++D+ A+ G +K
Sbjct: 185 EGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVK 244

Query: 388 AAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
            A +    M  +  +  W  ++    +HG +D  L+ F+R+    L+P+
Sbjct: 245 KAYEYIKSMPMQPNVVIWRTLLGACTVHGDSD--LAEFARIQILQLEPN 291



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 165/302 (54%), Gaps = 10/302 (3%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           + +HS +I++G  +  +  + L+ + A    GD++ A  VF+ + E + V WN++I G +
Sbjct: 8   ETIHSVVIRSGFGSLIYVQNSLLHLYA--NCGDVASAYKVFDKMPEKDLVAWNSVINGFA 65

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +  P  A+  Y  M   G  P+ +T   +L +CAKI A++ GK++H +++K+GL  +  
Sbjct: 66  ENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLH 125

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
               L+++YA+ G +E A+ +F++   +++VS+T+LI G A  G+  +A +LF  M    
Sbjct: 126 SSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYME-ST 184

Query: 227 ENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
           E  +P E T V +L AC+H G ++ G  +   + E + +   +     ++D+ ++ G + 
Sbjct: 185 EGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVK 244

Query: 286 KARDLFESIEKR-DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN---DVTFLSVL 341
           KA +  +S+  + +V+ W  ++G  T   D   A     Q+LQ  +EPN   D   LS +
Sbjct: 245 KAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQ--LEPNHSGDYVLLSNM 302

Query: 342 PA 343
            A
Sbjct: 303 YA 304


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 243/616 (39%), Positives = 370/616 (60%), Gaps = 20/616 (3%)

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
           P+ V + +++RG+        AI+ + +M       N  ++  +L        ++E +++
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFQQMPER----NHVSYTVLLGGLLDAGRVNEARRL 165

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
              +     + D    T++++ Y Q G +  AR +F++   R+ VS+TA+I+GYA  G +
Sbjct: 166 FDEMP----DRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEV 221

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           + AR+LF+ MP R      NE +   +L      G +E    + + +  H + +     N
Sbjct: 222 NLARKLFEVMPER------NEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAA----CN 271

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           A++  + + G +  A+ +FE + +RD  +W+ MI  Y       EAL  FR+ML   + P
Sbjct: 272 AMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRP 331

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N  + +S+L  CA L  LD G+ +HA + +    ++  ++ ++LI MY KCGN+  A++V
Sbjct: 332 NYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAV-SALITMYIKCGNLDKAKRV 390

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F     K +  WN+MI+G A HG  ++AL +F  M   G+ PD IT++G L+AC++ G +
Sbjct: 391 FHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKV 450

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
             GR+ FN+M  +  I P  +HY CMVDLLGR+GL +EA  L+K M ++PDA IW +L+G
Sbjct: 451 KEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMG 510

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           ACR+H   E+ E  AK LLELEP N G YVLLS++Y   GRW+D + +R  ++ + + K 
Sbjct: 511 ACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKS 570

Query: 573 PGCSSIEVGSVVHEFLVGDKV-HPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
           PGCS IE    VH F  GD + HP+   I  +L+++D LL +SG+  D S VL+D+DEE 
Sbjct: 571 PGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQ 630

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           K  +L +HSE+ A+AYGL+    G  IR++KNLRVCG+CHSA KLI+KI +REII RD N
Sbjct: 631 KSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDAN 690

Query: 692 RFHHFKDGNCSCNDYW 707
           RFHHFKDG CSC DYW
Sbjct: 691 RFHHFKDGFCSCRDYW 706



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 126/514 (24%), Positives = 216/514 (42%), Gaps = 101/514 (19%)

Query: 176 AQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNEST 235
           A+ G +E AR  F    LR   SY AL+ GY      D A  LF  MP R+   + + + 
Sbjct: 28  ARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRD---LASYNA 84

Query: 236 VVTVLS--------ACAHMGSLELGNWVC---SLIEG---HGLGSNL-----------HV 270
           +++ LS        A A + S+     V    SL+ G   HGL ++            HV
Sbjct: 85  LISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHV 144

Query: 271 T-NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           +   L+      G + +AR LF+ +  RDV++W  M+ GY       EA  LF +M + N
Sbjct: 145 SYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRN 204

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           +    V++ +++   A  G ++L + +   + +     N VS WT+++  Y + G+++ A
Sbjct: 205 V----VSWTAMISGYAQNGEVNLARKLFEVMPER----NEVS-WTAMLVGYIQAGHVEDA 255

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKAD------------------------------- 418
            ++F+ M    +A+ NAM+ G    G  D                               
Sbjct: 256 AELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLM 315

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478
           +ALS F  M+  G++P+  + + +L+ C    +LD GR+   AM++       +     +
Sbjct: 316 EALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLR-CSFDMDVFAVSAL 374

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK--HLLELEPE 536
           + +  + G  D+A+ +  T E K D  +W S++     HG   LGE      H + L   
Sbjct: 375 ITMYIKCGNLDKAKRVFHTFEPK-DIVMWNSMITGYAQHG---LGEQALGIFHDMRLAGM 430

Query: 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQ 596
           +P         Y GA          T  +  G  K       E   + +   V   + P 
Sbjct: 431 SPDGIT-----YIGA---------LTACSYTGKVK-------EGREIFNSMTVNSSIRPG 469

Query: 597 SKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           ++H   M+D    LL +SG V +  +++ +M  E
Sbjct: 470 AEHYSCMVD----LLGRSGLVEEAFDLIKNMPVE 499



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 131/259 (50%), Gaps = 6/259 (2%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G +  A  VFE + E +   W+ +I+ +  +   + A+  +  M+  G  PN  +   IL
Sbjct: 281 GMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISIL 340

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
             CA ++ +  G+++HA +L+   + D F  ++LI MY + G L+ A+ VF+    +D V
Sbjct: 341 TVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIV 400

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC- 256
            + ++ITGYA  G  + A  +F +M  R     P+  T +  L+AC++ G ++ G  +  
Sbjct: 401 MWNSMITGYAQHGLGEQALGIFHDM--RLAGMSPDGITYIGALTACSYTGKVKEGREIFN 458

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDY 315
           S+     +       + ++D+  + G + +A DL +++  + D + W  ++G      + 
Sbjct: 459 SMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNA 518

Query: 316 KEALMLFRQMLQSNIEPND 334
           + A    +++L+  +EP +
Sbjct: 519 EIAEFAAKKLLE--LEPGN 535



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 124/299 (41%), Gaps = 69/299 (23%)

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           NA I   ++ G++  AR  FE++  R   S+N ++ GY        AL LFR+M   ++ 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 332 -----------------------------PNDVTFLSVLPACAYLGAL-DLGKWIHAYID 361
                                        P+ V+F S+L      G L D  +      +
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 362 KNH-------------------QKL------NNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
           +NH                   ++L       +V  WT+++  Y + G I  A  +FD M
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 397 GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR 456
             + + SW AMISG A +G+ + A  LF  M     + +++++  +L     AG ++   
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMP----ERNEVSWTAMLVGYIQAGHVEDAA 256

Query: 457 QYFNAMIQDYKISPKLQHYGC--MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
           + FNAM       P+     C  M+   G+ G+ D A+ + + M  + D   W++++ A
Sbjct: 257 ELFNAM-------PEHPVAACNAMMVGFGQRGMVDAAKTVFEKM-CERDDGTWSAMIKA 307


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Glycine max]
          Length = 1033

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 275/687 (40%), Positives = 395/687 (57%), Gaps = 24/687 (3%)

Query: 36   LLSKCTNMQNIKQ-------VHSQIIKTGLHNTQF----ALSKLIEICAVSPFGDLSYAL 84
            LLS  T   N+K+       VH+ +I+  L +       AL  L   C       +  A 
Sbjct: 356  LLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKC-----NAIDNAR 410

Query: 85   LVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS 144
             +F+ +   + V WN+II G   +     A+  +  M  +G VP+ ++    L SCA + 
Sbjct: 411  SIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLG 470

Query: 145  AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
             I  G+QIH   +K GL+ D  V  +L+ +YA+   +E  + VF      D VS+ + I 
Sbjct: 471  WIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIG 530

Query: 205  GYA-SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG 263
              A S   +  A + F EM   +  + PN  T + +LSA + +  LELG  + +LI  H 
Sbjct: 531  ALATSEASVLQAIKYFLEM--MQAGWKPNRVTFINILSAVSSLSLLELGRQIHALILKHS 588

Query: 264  LGSNLHVTNALIDMYSKCGDLVKARDLFESI-EKRDVISWNVMIGGYTHTSDYKEALMLF 322
            +  +  + N L+  Y KC  +     +F  + E+RD +SWN MI GY H     +A+ L 
Sbjct: 589  VADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLV 648

Query: 323  RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
              M+Q     +D T  +VL ACA +  L+ G  +HA   +   +   V + ++L+DMYAK
Sbjct: 649  WLMMQKGQRLDDFTLATVLSACASVATLERGMEVHACAIRACLEAE-VVVGSALVDMYAK 707

Query: 383  CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
            CG I  A + F+ M  + + SWN+MISG A HG   KAL LF++M   G  PD +TFVGV
Sbjct: 708  CGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGV 767

Query: 443  LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
            LSAC+H GL+D G ++F +M + Y+++P+++H+ CMVDLLGRAG   + E  +KTM M P
Sbjct: 768  LSACSHVGLVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNP 827

Query: 503  DAAIWTSLLGA-CRVHGR-LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATI 560
            +A IW ++LGA CR + R  ELG   AK L+ELEP N   YVLLSNM+A  G+W+DV   
Sbjct: 828  NALIWRTILGACCRANSRNTELGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDVEEA 887

Query: 561  RTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDT 620
            R  + +  +KK  GCS + +   VH F+ GD+ HP+ + IY+ L EI   +   G+VP+T
Sbjct: 888  RLAMRNAEVKKEAGCSWVTMKDGVHVFVAGDQTHPEKEKIYDKLKEIMNKMRDLGYVPET 947

Query: 621  SEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKI 680
               LYD++ E KE  LS+HSEKLAIA+ +++ +    IRI+KNLRVCG+CH+A K IS I
Sbjct: 948  KYALYDLELENKEELLSYHSEKLAIAF-VLTRQSELPIRIIKNLRVCGDCHTAFKYISNI 1006

Query: 681  FNREIIARDRNRFHHFKDGNCSCNDYW 707
             NR+II RD NRFHHF  G CSC DYW
Sbjct: 1007 VNRQIILRDSNRFHHFDGGICSCQDYW 1033



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 140/527 (26%), Positives = 258/527 (48%), Gaps = 32/527 (6%)

Query: 6   SSLTLSPSILHFPPSSD-----PPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHN 60
           + L LS  +LH   SS      PP  L  N+        CT +++  Q+H QI KTGL +
Sbjct: 18  TQLALSEQLLHHCNSSHHHLHFPPLNLDYNRYR----DSCT-VEDAHQLHLQIYKTGLTS 72

Query: 61  TQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVR 120
             F  + L+ I   +  G+L  A  +F+ + + N V W+ ++ G++ +  P  A   +  
Sbjct: 73  DVFWCNTLVNIFVRA--GNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGMPDEACMLFRG 130

Query: 121 MILSGFVPNTYTFPFILKSCAKI--SAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ- 177
           +I +G +PN Y     L++C ++  + +  G +IH  + K    SD  +   L++MY+  
Sbjct: 131 IISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVLSNVLMSMYSHC 190

Query: 178 NGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM--PIREENFVPNEST 235
           +  ++ AR VF +  ++ + S+ ++I+ Y  RG    A +LF  M     E N  PNE T
Sbjct: 191 SASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREATELNCRPNEYT 250

Query: 236 VVTVLS-ACAHMG-SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
             ++++ AC+ +   L L   + + IE      +L+V +AL+  +++ G +  A+ +FE 
Sbjct: 251 FCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQ 310

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
           ++ R+ ++ N ++ G       +EA  +F++M +  +E N  ++  +L A      L  G
Sbjct: 311 MDDRNAVTMNGLMVGLARQHQGEEAAKIFKEM-KDLVEINASSYAVLLSAFTEFSNLKEG 369

Query: 354 KW----IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
           K     +HAY+ +N      + +  +L+++YAKC  I  A  +F  M  K   SWN++IS
Sbjct: 370 KRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIIS 429

Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ---DY 466
           GL  + + ++A++ F  M   G+ P   + +  LS+C   G + +G+Q     I+   D 
Sbjct: 430 GLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDL 489

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
            +S        ++ L       +E + +   M  + D   W S +GA
Sbjct: 490 DVSVS----NALLTLYAETDCMEEYQKVFFLMP-EYDQVSWNSFIGA 531



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 211/420 (50%), Gaps = 21/420 (5%)

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
           + +  Q+H  + K GL SD F   +L+N++ + G L SA+ +F++   ++ VS++ L++G
Sbjct: 55  VEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSG 114

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS--LELGNWVCSLIEGHG 263
           YA  G  D+A  LF    I     +PN   + + L AC  +G   L+LG  +  LI    
Sbjct: 115 YAQNGMPDEACMLFR--GIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSP 172

Query: 264 LGSNLHVTNALIDMYSKC-GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
             S++ ++N L+ MYS C   +  AR +FE I+ +   SWN +I  Y    D   A  LF
Sbjct: 173 YASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLF 232

Query: 323 ----RQMLQSNIEPNDVTFLSVLP-ACAYLG-ALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
               R+  + N  PN+ TF S++  AC+ +   L L + + A I+K+   + ++ + ++L
Sbjct: 233 SSMQREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKS-SFVKDLYVGSAL 291

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           +  +A+ G I +A+ +F+ M  +   + N ++ GLA   + ++A  +F  M  + ++ + 
Sbjct: 292 VSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEM-KDLVEINA 350

Query: 437 ITFVGVLSACNHAGLLDIGR---QYFNA-MIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
            ++  +LSA      L  G+   Q  +A +I++  +   +     +V+L  +    D A 
Sbjct: 351 SSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNAR 410

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK-HLLELEPENPGAYVLLSNMYAGA 551
           ++ + M  K D   W S++     + R E  E+VA  H +      P  + ++S + + A
Sbjct: 411 SIFQLMPSK-DTVSWNSIISGLDHNERFE--EAVACFHTMRRNGMVPSKFSVISTLSSCA 467


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 251/703 (35%), Positives = 403/703 (57%), Gaps = 19/703 (2%)

Query: 10  LSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFA----L 65
           LS S     P  DP  KLL+      + +   N++  + +H+ +  T  HN + +    L
Sbjct: 9   LSRSNFLASPHQDP-IKLLK------VAADAKNLKFGRTIHAHLTITN-HNYRDSKVNQL 60

Query: 66  SKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILS- 124
           + LI +       ++S A  +F+++   N V W+ ++ G+  + +P+   + + +M++  
Sbjct: 61  NSLINLYV--KCDEVSIARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKD 118

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
              PN Y     + SC     + EGKQ H + LK GLE   +V  +LI +Y++  ++ +A
Sbjct: 119 NIFPNEYVIATAISSCDSQMYV-EGKQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAA 177

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
             +       D   Y  ++ G     ++ +A  +     I  E    N +T VT+   CA
Sbjct: 178 IQILYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVLK--LIISEGIEWNNATYVTIFRLCA 235

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
            +  + LG  V + +    +  ++++ +++IDMY KCG+++  R  F+ ++ R+V+SW  
Sbjct: 236 SLKDITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTS 295

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           +I  Y     ++EAL LF +M    I PN+ T   +  + A L AL LG  +HA  +K+ 
Sbjct: 296 IIAAYFQNEFFEEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQLHARAEKSG 355

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF 424
            K  NV +  +LI MY K G+I AA+ VF  M    + +WNA+I+G + HG   +ALS+F
Sbjct: 356 LK-GNVMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHHGLGKEALSMF 414

Query: 425 SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484
             M+  G +P+ +TF+GV+ AC H  L+D G  YFN +++ ++I P L+HY C+V LL R
Sbjct: 415 QDMMATGERPNYVTFIGVILACAHLKLVDEGFYYFNHLMKQFRIVPGLEHYTCIVGLLSR 474

Query: 485 AGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL 544
           +G  DEAE  +++ ++  D   W +LL AC VH   + G  +A++LL+LEP + G Y+LL
Sbjct: 475 SGRLDEAENFMRSHQINWDVVSWRTLLNACYVHKHYDKGRKIAEYLLQLEPRDVGTYILL 534

Query: 545 SNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEML 604
           SNM+A   RWD V  IR  + ++ +KK PG S +E+ +V H F   D  HP++  IYE +
Sbjct: 535 SNMHARVRRWDHVVEIRKLMRERNVKKEPGVSWLEIRNVAHVFTSEDIKHPEANLIYENV 594

Query: 605 DEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNL 664
            ++ + +   G+VPD   VL+D+++E K   LS+HSEKLA+AYGL+ T  G  I ++KNL
Sbjct: 595 KDLLSKIRPLGYVPDIDNVLHDIEDEQKVDNLSYHSEKLAVAYGLMKTPSGAPITVIKNL 654

Query: 665 RVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           R+C +CH+A KLISK+ NR I+ RD NRFHHF++G CSC DYW
Sbjct: 655 RMCDDCHTAIKLISKVANRVIVVRDANRFHHFQNGCCSCGDYW 697


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 241/560 (43%), Positives = 352/560 (62%), Gaps = 5/560 (0%)

Query: 150 KQIHAHVLKLGLESDPFVHTSLINM-YAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           +QIHA ++  GL     + T L++  YA    +   R +F      D   + +LIT  + 
Sbjct: 36  QQIHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKPDTFLFHSLITLTSK 95

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
             +  ++   +  M +   N   +  T   V+ + A + +  +G  +   +   G G + 
Sbjct: 96  FSFPQESLLCYRRMLL--ANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDA 153

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
           +V  AL+  Y+K G ++ AR +F+ + ++ V++WN MI GY      KEA+ LF  M   
Sbjct: 154 YVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDL 213

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            ++P+  TF+S+L ACA +GA+ LG W+H YI +N   LN V L T+L++MY++CGN+  
Sbjct: 214 GVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLN-VVLGTALMNMYSRCGNVSK 272

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A +VFD M  K + +W AMISG  MHG   +A+ LF+ M  +G +P+++TFV VLSAC H
Sbjct: 273 AREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAH 332

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK-TMEMKPDAAIW 507
           AGL+D GRQ F  M Q+Y + P ++H  CMVD+LGRAG  +EA   +K T   +P  A+W
Sbjct: 333 AGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVW 392

Query: 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
           T++LGAC++H   +LG  VA+HLL +EPENPG YV+LSN+YA AGR D V  IR  +   
Sbjct: 393 TAMLGACKMHKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAGRMDRVEKIRNIMIRN 452

Query: 568 GMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
            +KK  G S+I+V   V+ F +GDK HP++  IY  LDE+ +   ++G++P +  V++++
Sbjct: 453 RLKKEVGYSTIDVDHKVYLFSMGDKSHPKTNQIYLYLDELMSRCREAGYIPASESVMHEV 512

Query: 628 DEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIA 687
           +EE +E AL +HSEKLAIA+GL+ T  G  IRIVKNLR+C +CH+A K IS I NREI  
Sbjct: 513 EEEEREYALRYHSEKLAIAFGLLKTGSGVAIRIVKNLRMCEDCHTAIKYISIIANREINV 572

Query: 688 RDRNRFHHFKDGNCSCNDYW 707
           RDR RFHHFKDG+CSC DYW
Sbjct: 573 RDRLRFHHFKDGSCSCQDYW 592



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 135/428 (31%), Positives = 242/428 (56%), Gaps = 12/428 (2%)

Query: 43  MQNIKQVHSQIIKTGLHNTQFALSKLIEIC--AVSPFGDLSYALLVFETIREPNQVIWNN 100
           ++ ++Q+H++II TGL  T+  ++KL+     A SP   +SY   +F +I +P+  ++++
Sbjct: 32  LKPLQQIHARIIITGLGRTRSLITKLLSFAYAAASP---ISYTRRLFFSIPKPDTFLFHS 88

Query: 101 IIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG 160
           +I   S  S P  ++  Y RM+L+    + YTF  ++KS A ++A S G+ IH HV   G
Sbjct: 89  LITLTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICG 148

Query: 161 LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD 220
              D +V  +L++ YA++G +  AR VF+K   +  V++ ++I+GY   G+  +A +LF 
Sbjct: 149 YGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFF 208

Query: 221 EMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK 280
            M  ++    P+ ST V++LSACA +G++ LG WV   I  +    N+ +  AL++MYS+
Sbjct: 209 LM--QDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSR 266

Query: 281 CGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSV 340
           CG++ KAR++F+S+E++++++W  MI GY       +A+ LF +M      PN+VTF++V
Sbjct: 267 CGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAV 326

Query: 341 LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK- 399
           L ACA+ G +D G+ I   + + +  + +V     ++DM  + G++  A Q       K 
Sbjct: 327 LSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKE 386

Query: 400 -TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH-AGLLDIGRQ 457
              A W AM+    MH   D  + +   ++   ++P++     +LS     AG +D   +
Sbjct: 387 PAPAVWTAMLGACKMHKNFDLGVEVAEHLL--SIEPENPGHYVMLSNIYALAGRMDRVEK 444

Query: 458 YFNAMIQD 465
             N MI++
Sbjct: 445 IRNIMIRN 452


>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
 gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
          Length = 583

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/579 (40%), Positives = 358/579 (61%), Gaps = 9/579 (1%)

Query: 37  LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICA-VSPFGDLSYALLVFETIREPNQ 95
           +  C N++  +Q+H+Q++ +GL    F  SK++E  A    +GD +   L     R    
Sbjct: 12  IKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQGNTR-LGS 70

Query: 96  VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAH 155
             +N++I G+     P +A+  Y RM+  GFVP+ +TFP +LK+C+  S   EG+Q+H  
Sbjct: 71  FPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGV 130

Query: 156 VLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDA 215
           V+KLGL +D +V  SLI  Y   G+   A  VF++  +RD VS+ +LI+G+   G+ D+A
Sbjct: 131 VVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEA 190

Query: 216 RQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALI 275
             +F  M +      P+ +T+V+VL+ACA  G L  G  +  +IE      NL + NA++
Sbjct: 191 ISVFFRMDVE-----PSMTTLVSVLAACARNGDLCTGKGIHGVIERR-FKVNLVLGNAML 244

Query: 276 DMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV 335
           DMY K G   +A+++F+ +  RD++SW +MI G   +   K++L LF  M    I P+ +
Sbjct: 245 DMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAI 304

Query: 336 TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
              SVL ACA LG LD G W+H YI++   K + + + T+++DMYAKCG I+ A ++F  
Sbjct: 305 ILTSVLSACASLGTLDFGTWVHEYINQRGIKWD-IHIGTAIVDMYAKCGCIEMALKIFYS 363

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
           M  +   +WNA++ GLAMHG   +AL+LF  MI  G++P++ITF+ +L+AC H GL+D G
Sbjct: 364 MSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEG 423

Query: 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACR 515
           R+YF+ M + Y + PKL+HYGCM+DL  RAGL +EA  L +TM MKPD  IW  LL AC 
Sbjct: 424 RKYFDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWGLLLNACT 483

Query: 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGC 575
             G +EL   +  ++LEL+ ++ G +VLLSN+ A   RW +V  +R  + D+G++K PG 
Sbjct: 484 TVGNIELSHRIQDYILELDHDDSGVFVLLSNISAINQRWSNVTRLRRLMKDRGVRKAPGS 543

Query: 576 SSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKS 614
           S IEV    HEF+VGD  H Q++ IY++L+ I+++  +S
Sbjct: 544 SVIEVDGKAHEFVVGDISHLQTEEIYKVLNLINSVYHES 582


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 252/619 (40%), Positives = 368/619 (59%), Gaps = 43/619 (6%)

Query: 127 VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARL 186
           +PN  TF  +L    K+S +   +QIHA V+   L S+  +  SLI+ Y       +AR+
Sbjct: 71  LPNPQTFSLLLNQRPKLSPL---QQIHAQVVTQALSSNASLTASLIHCYLCAKNHPNARI 127

Query: 187 VFNK--SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE--ENFVPNESTVVTVLSA 242
           +F+   S       +  +I  Y+      +   LF  M   +     VP+E T   V+++
Sbjct: 128 LFDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITS 187

Query: 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDM------------------------- 277
           C+H  SL  G  V  ++   G  SNL+V N++I+M                         
Sbjct: 188 CSHQISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSW 247

Query: 278 ------YSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-QSNI 330
                 Y+K G++ +A +LF  +  R+ +SW VMI G+     Y EAL  F  ML    +
Sbjct: 248 TSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRV 307

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDK-NHQKLNNVSLWTSLIDMYAKCGNIKAA 389
            PN+   + VL ACA+LGALD G WIH YIDK   ++ +N+S  T+LIDMYAKCG I  A
Sbjct: 308 NPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNIS--TALIDMYAKCGRIDCA 365

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
            +VF+G+  + + S+ +MISGL+ HG    AL +F +M+ E + P++IT +GVL+ C+H+
Sbjct: 366 SRVFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHS 425

Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
           GL++ G      M   + I+PK++HYGC +DLLGRAG  + A  ++KTM M+PD  IW +
Sbjct: 426 GLVEEGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRA 485

Query: 510 LLGACRVHGRLELGESVAKHLLELEP-ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568
           LL A R+H  + LGE +  H+ +L+  ++ G  VLLSN+YA  GRW+ V  +R  + D+ 
Sbjct: 486 LLSASRIHHNVNLGEQIISHIGQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRR 545

Query: 569 MKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
            +  PGCS IEV  +VHEF V D++HPQ   I   L+EI   L + G+  +T +V +D++
Sbjct: 546 SESSPGCSWIEVNGLVHEFRVADQLHPQIVEIRNKLNEILKRLSQIGYSANTMQVSFDLN 605

Query: 629 EEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIAR 688
           EE KE A++ HSEKLAIA+GL+ST+PGT IRIVKNLR C +CHSA K IS+++ REI+ R
Sbjct: 606 EEEKEQAVAWHSEKLAIAFGLMSTEPGTLIRIVKNLRTCEDCHSALKTISQVYGREIVVR 665

Query: 689 DRNRFHHFKDGNCSCNDYW 707
           DR+RFH F +G+CSC D+W
Sbjct: 666 DRSRFHTFIEGDCSCKDFW 684



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 145/471 (30%), Positives = 243/471 (51%), Gaps = 56/471 (11%)

Query: 19  PSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIE--ICAVSP 76
           P++  P  L   Q    LL++   +  ++Q+H+Q++   L +     + LI   +CA   
Sbjct: 63  PTNPIPIDLPNPQTFSLLLNQRPKLSPLQQIHAQVVTQALSSNASLTASLIHCYLCA--- 119

Query: 77  FGDLSYALLVFETIREPNQVI--WNNIIRGHSLSSSPVVAIKFYVRMI-LSG---FVPNT 130
             +   A ++F+    P+  I  WN +IR +S   +    I  ++RM+ L G    VP+ 
Sbjct: 120 -KNHPNARILFDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDE 178

Query: 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK 190
           YTF F++ SC+   ++  G+ +H  V+K G ES+ +V  S+INM +    +E AR VFN+
Sbjct: 179 YTFTFVITSCSHQISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQ 238

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR------------------------- 225
            S RD  S+T+L+ GYA  G +D A +LF+ MP+R                         
Sbjct: 239 MSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFF 298

Query: 226 -----EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK 280
                ++   PNE+ +V VLSACAH+G+L+ GNW+   I+  G+  + +++ ALIDMY+K
Sbjct: 299 CNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAK 358

Query: 281 CGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSV 340
           CG +  A  +F  I KRDV+S+  MI G ++    K+AL +F QML  N+ PN++T L V
Sbjct: 359 CGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILGV 418

Query: 341 LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT 400
           L  C++ G ++ G  I A ++        +  +   ID+  + G ++ A +V   M  + 
Sbjct: 419 LNGCSHSGLVEEGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEP 478

Query: 401 -LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
            +  W A++S   +H   +         +GE +    I+ +G L + +H G
Sbjct: 479 DIVIWRALLSASRIHHNVN---------LGEQI----ISHIGQLKSSDHNG 516


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 248/662 (37%), Positives = 396/662 (59%), Gaps = 6/662 (0%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K++H+ ++K+  H+++  +   + I   +  G +  A  +   +   + V WN++I+G+ 
Sbjct: 304 KEIHASVLKSSTHSSELYVCNAL-IAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYV 362

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +     A++F+  MI +G   +  +   I+ +  ++S +  G ++HA+V+K G +S+  
Sbjct: 363 QNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQ 422

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V  +LI+MY++          F +   +D +S+T +I GYA      +A +LF +  + +
Sbjct: 423 VGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRD--VAK 480

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           +    +E  + ++L A + + S+ +   +   I   GL   + + N L+D+Y KC ++  
Sbjct: 481 KRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTV-IQNELVDVYGKCRNMGY 539

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A  +FESI+ +DV+SW  MI       +  EA+ LFR+M+++ +  + V  L +L A A 
Sbjct: 540 ATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAAS 599

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
           L AL+ G+ IH Y+ +    L   S+  +++DMYA CG++++A+ VFD +  K L  + +
Sbjct: 600 LSALNKGREIHCYLLRKGFCLEG-SIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTS 658

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
           MI+   MHG    A+ LF +M  E + PD I+F+ +L AC+HAGLLD GR +   M  +Y
Sbjct: 659 MINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEY 718

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
           ++ P  +HY C+VD+LGRA    EA   +K M+ +P A +W +LL ACR H   E+GE  
Sbjct: 719 ELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIA 778

Query: 527 AKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHE 586
           A+ LLELEP+NPG  VL+SN++A  GRW+DV  +R ++   GM+K PGCS IE+   VH+
Sbjct: 779 AQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHK 838

Query: 587 FLVGDKVHPQSKHIYEMLDEIDALLEKS-GFVPDTSEVLYDMDEEWKEGALSHHSEKLAI 645
           F   DK HP+SK IYE L E+   LE+  G+V DT  VL+++DE  K   L  HSE++AI
Sbjct: 839 FTARDKSHPESKEIYEKLSEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAI 898

Query: 646 AYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCND 705
           AYGL+ T     +RI KNLRVC +CH+  KL+SK+F R+I+ RD NRFHHF+ G CSC D
Sbjct: 899 AYGLLRTPDRACLRITKNLRVCRDCHTFCKLVSKLFRRDIVMRDANRFHHFESGLCSCGD 958

Query: 706 YW 707
            W
Sbjct: 959 SW 960



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 141/488 (28%), Positives = 252/488 (51%), Gaps = 11/488 (2%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKT-GLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           L L  K   +   +Q+HS+I KT       F   KL+ +      G L  A  VF+ + +
Sbjct: 87  LELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFM--YGKCGSLDDAEKVFDEMPD 144

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
                WN +I  +  +  P  A+  Y  M + G      +FP +LK+CAK+  I  G ++
Sbjct: 145 RTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSEL 204

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-DAVSYTALITGYASRGY 211
           H+ ++KLG  S  F+  +L++MYA+N +L +AR +F+    + DAV + ++++ Y++ G 
Sbjct: 205 HSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGK 264

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV-CSLIEGHGLGSNLHV 270
             +  +LF EM +      PN  T+V+ L+AC      +LG  +  S+++     S L+V
Sbjct: 265 SLETLELFREMHM--TGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYV 322

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            NALI MY++CG + +A  +   +   DV++WN +I GY     YKEAL  F  M+ +  
Sbjct: 323 CNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGH 382

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           + ++V+  S++ A   L  L  G  +HAY+ K H   +N+ +  +LIDMY+KC       
Sbjct: 383 KSDEVSMTSIIAASGRLSNLLAGMELHAYVIK-HGWDSNLQVGNTLIDMYSKCNLTCYMG 441

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           + F  M  K L SW  +I+G A +    +AL LF  +  + ++ D++    +L A +   
Sbjct: 442 RAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLK 501

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
            + I ++    +++   +   +Q+   +VD+ G+      A  + ++++ K D   WTS+
Sbjct: 502 SMLIVKEIHCHILRKGLLDTVIQNE--LVDVYGKCRNMGYATRVFESIKGK-DVVSWTSM 558

Query: 511 LGACRVHG 518
           + +  ++G
Sbjct: 559 ISSSALNG 566



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 123/411 (29%), Positives = 198/411 (48%), Gaps = 14/411 (3%)

Query: 132 TFPFILKSCAKISAISEGKQIHAHVLKL--GLESDPFVHTSLINMYAQNGELESARLVFN 189
            F ++L+ C K  A+S+G+Q+H+ + K     E D F+   L+ MY + G L+ A  VF+
Sbjct: 82  AFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELD-FLAGKLVFMYGKCGSLDDAEKVFD 140

Query: 190 KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL 249
           +   R A ++  +I  Y S G    A  L+  M  R E      S+   +L ACA +  +
Sbjct: 141 EMPDRTAFAWNTMIGAYVSNGEPASALALYWNM--RVEGVPLGLSSFPALLKACAKLRDI 198

Query: 250 ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI-EKRDVISWNVMIGG 308
             G+ + SL+   G  S   + NAL+ MY+K  DL  AR LF+   EK D + WN ++  
Sbjct: 199 RSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSS 258

Query: 309 YTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN 368
           Y+ +    E L LFR+M  +   PN  T +S L AC       LGK IHA + K+    +
Sbjct: 259 YSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSS 318

Query: 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMI 428
            + +  +LI MY +CG +  AE++   M    + +WN++I G   +    +AL  FS MI
Sbjct: 319 ELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMI 378

Query: 429 GEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488
             G + D+++   +++A      L  G +  +A +  +     LQ    ++D+  +  L 
Sbjct: 379 AAGHKSDEVSMTSIIAASGRLSNLLAGME-LHAYVIKHGWDSNLQVGNTLIDMYSKCNLT 437

Query: 489 DEAEALLKTMEMKPDAAIWTSLLGA-----CRVHGRLELGESVAKHLLELE 534
                    M  K D   WT+++       C V   LEL   VAK  +E++
Sbjct: 438 CYMGRAFLRMHDK-DLISWTTVIAGYAQNDCHVEA-LELFRDVAKKRMEID 486


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1038

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/675 (36%), Positives = 384/675 (56%), Gaps = 6/675 (0%)

Query: 34   LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
            L++L    + +  + +H  ++K G  +     + L+ + A +  G    A LVF+ +   
Sbjct: 369  LSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGA--GRSEEADLVFKQMPTK 426

Query: 94   NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
            + + WN+++         + A+     MI +G   N  TF   L +C       +G+ +H
Sbjct: 427  DLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILH 486

Query: 154  AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
              V+  GL  +  +  +L++MY + G + ++R V  +   RD V++ ALI GYA     D
Sbjct: 487  GLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAENEDPD 546

Query: 214  DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL-ELGNWVCSLIEGHGLGSNLHVTN 272
             A   F    +R E    N  TVV+VLSAC   G L E G  + + I   G  S+ HV N
Sbjct: 547  KALAAFQ--TLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFESDEHVKN 604

Query: 273  ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            +LI MY+KCGDL  ++DLF  ++ R +I+WN ++    H    +E L L  +M    +  
Sbjct: 605  SLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMRSFGLSL 664

Query: 333  NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
            +  +F   L A A L  L+ G+ +H    K   +L+   ++ +  DMY+KCG I    ++
Sbjct: 665  DQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFELD-CFIFNAAADMYSKCGEIGEVVKM 723

Query: 393  FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
                  ++L SWN +IS L  HG  ++    F  M+  G++P  +TFV +L+AC+H GL+
Sbjct: 724  LPPSVNRSLPSWNILISALGRHGYFEEVCETFHEMLEMGIKPGHVTFVSLLTACSHGGLV 783

Query: 453  DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
            D G  Y++ + +D+ + P ++H  C++DLLGR+G   EAE  +  M MKP+  +W SLL 
Sbjct: 784  DQGLAYYDMIAKDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLA 843

Query: 513  ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
            +C++H  L+ G   A++L +LEPE+   +VL SNM+A  GRW+DV  +R ++  K +KK 
Sbjct: 844  SCKIHRDLDRGRKAAENLSKLEPEDDSVFVLSSNMFATTGRWEDVENVRKQMGFKNIKKK 903

Query: 573  PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
              CS +++   V  F +GD+ HPQ+  IY  L++I  L+++SG+V DTS+ L D DEE K
Sbjct: 904  QACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQK 963

Query: 633  EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
            E  L +HSE+LA+AY L+ST  G+T+RI KNLR+C +CHS  K +S++  R I+ RD+ R
Sbjct: 964  EHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYR 1023

Query: 693  FHHFKDGNCSCNDYW 707
            FHHF+ G CSC DYW
Sbjct: 1024 FHHFESGLCSCKDYW 1038



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 137/482 (28%), Positives = 238/482 (49%), Gaps = 11/482 (2%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSL 107
           QVH  + K+GL +  +  + ++ +  V  +G +S +  VFE + + N V W +++ G+S 
Sbjct: 181 QVHGFVAKSGLLSDVYVSTAILHLYGV--YGLVSCSRKVFEEMPDRNVVSWTSLMVGYSD 238

Query: 108 SSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFV 167
              P   I  Y  M   G   N  +   ++ SC  +   S G+QI   V+K GLES   V
Sbjct: 239 KGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAV 298

Query: 168 HTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREE 227
             SLI+M+   G ++ A  +FN+ S RD +S+ +++  YA  G+++++ ++F+ M  R  
Sbjct: 299 ENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLM--RRF 356

Query: 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA 287
           +   N +TV T+LS    +   + G  +  L+   G  S + V N L+ MY+  G   +A
Sbjct: 357 HDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEA 416

Query: 288 RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347
             +F+ +  +D+ISWN ++  + +     +AL +   M+++    N VTF S L AC   
Sbjct: 417 DLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSP 476

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
              D G+ +H  +  +    +N  +  +L+ MY K G +  + +V   M  + + +WNA+
Sbjct: 477 EFFDKGRILHGLVVVSGL-FDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNAL 535

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG-LLDIGRQYFNAMIQDY 466
           I G A +   DKAL+ F  +  EG+  + IT V VLSAC   G LL+ G+   +A I   
Sbjct: 536 IGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKP-LHAYIVSA 594

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
                      ++ +  + G    ++ L   ++ +     W ++L A   HG    GE V
Sbjct: 595 GFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRS-IITWNAILAANAHHGH---GEEV 650

Query: 527 AK 528
            K
Sbjct: 651 LK 652



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 129/481 (26%), Positives = 232/481 (48%), Gaps = 14/481 (2%)

Query: 37  LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQV 96
            S+ T     + +H+  +K  +  +    + LI +   + FG +  A  +F+ +   N+V
Sbjct: 68  FSQITRETTGRALHALCVKGLVRLSVLHTNTLINM--YTKFGRVKPARYLFDKMPVRNEV 125

Query: 97  IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKI-SAISEGKQIHAH 155
            WN ++ G       +  ++F+ +M   G  P+++    ++ +C +  S   EG Q+H  
Sbjct: 126 SWNTMMSGIVRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGF 185

Query: 156 VLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDA 215
           V K GL SD +V T+++++Y   G +  +R VF +   R+ VS+T+L+ GY+ +G  ++ 
Sbjct: 186 VAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEV 245

Query: 216 RQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALI 275
             ++  M  R E    NE+++  V+S+C  +    LG  +   +   GL S L V N+LI
Sbjct: 246 IDIYKSM--RGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLI 303

Query: 276 DMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV 335
            M+   G++  A  +F  I +RD ISWN ++  Y      +E+  +F  M + + E N  
Sbjct: 304 SMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNST 363

Query: 336 TFLSVLPACAYLGALDLGKW---IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           T  ++L   + LG +D  KW   IH  + K     + V +  +L+ MYA  G  + A+ V
Sbjct: 364 TVSTLL---SVLGDVDHQKWGRGIHGLVVKMGFD-SVVCVCNTLLRMYAGAGRSEEADLV 419

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F  M  K L SWN++++     G++  AL +   MI  G   + +TF   L+AC      
Sbjct: 420 FKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFF 479

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           D GR     ++       ++     +V + G+ G    +  +L  M  + D   W +L+G
Sbjct: 480 DKGRILHGLVVVSGLFDNQIIG-NALVSMYGKIGGMSTSRRVLLQMP-RRDVVAWNALIG 537

Query: 513 A 513
            
Sbjct: 538 G 538



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 134/257 (52%), Gaps = 5/257 (1%)

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
           S LH TN LI+MY+K G +  AR LF+ +  R+ +SWN M+ G      Y E +  F++M
Sbjct: 92  SVLH-TNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVRVGLYLEGMEFFQKM 150

Query: 326 LQSNIEPNDVTFLSVLPACAYLGAL-DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
               I+P+     S++ AC   G++   G  +H ++ K+   L++V + T+++ +Y   G
Sbjct: 151 CDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGL-LSDVYVSTAILHLYGVYG 209

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
            +  + +VF+ M  + + SW +++ G +  G+ ++ + ++  M GEG++ ++ +   V+S
Sbjct: 210 LVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVIS 269

Query: 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504
           +C       +GRQ    +I+   +  KL     ++ + G  G  D A  +   +  + D 
Sbjct: 270 SCGLLKDESLGRQIIGQVIKS-GLESKLAVENSLISMFGNMGNVDYANYIFNQISER-DT 327

Query: 505 AIWTSLLGACRVHGRLE 521
             W S++ A   +G +E
Sbjct: 328 ISWNSIVAAYAQNGHIE 344


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/583 (42%), Positives = 351/583 (60%), Gaps = 8/583 (1%)

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
           G   ++ T+  ++K C    A+ EG  I  H+   G     F+   LINMY +   L  A
Sbjct: 56  GLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDA 115

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
             +F++   R+ +S+T +I+ Y+       A +L   M    +N  PN  T  +VL +C 
Sbjct: 116 HQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLML--RDNVRPNVYTYSSVLRSCN 173

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
            M  + + +  C +I+  GL S++ V +ALID+++K G+   A  +F+ +   D I WN 
Sbjct: 174 GMSDVRMLH--CGIIK-EGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNS 230

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           +IGG+   S    AL LF++M ++       T  SVL AC  L  L+LG   H +I K  
Sbjct: 231 IIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD 290

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF 424
           Q L    L  +L+DMY KCG+++ A +VF+ M  + + +W+ MISGLA +G + +AL LF
Sbjct: 291 QDL---ILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLF 347

Query: 425 SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484
            RM   G +P+ IT VGVL AC+HAGLL+ G  YF +M + Y I P  +HYGCM+DLLG+
Sbjct: 348 ERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGK 407

Query: 485 AGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL 544
           AG  D+A  LL  ME +PDA  W +LLGACRV   + L E  AK ++ L+PE+ G Y LL
Sbjct: 408 AGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLL 467

Query: 545 SNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEML 604
           SN+YA + +WD V  IRTR+ D+G+KK PGCS IEV   +H F++GD  HPQ   + + L
Sbjct: 468 SNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKL 527

Query: 605 DEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNL 664
           +++   L   G+VP+T+ VL D++ E  E +L HHSEKLA+A+GL++      IRI KNL
Sbjct: 528 NQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNL 587

Query: 665 RVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           R+CG+CH   KL SK+  R I+ R   R+HHF+DG CSC DYW
Sbjct: 588 RICGDCHVFCKLASKLEIRSIVIRGPIRYHHFQDGKCSCGDYW 630



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 116/374 (31%), Positives = 187/374 (50%), Gaps = 49/374 (13%)

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
           F  L+ A  +F+ + + N + W  +I  +S       A++  V M+     PN YT+  +
Sbjct: 109 FNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSV 168

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L+SC   + +S+ + +H  ++K GLESD FV ++LI+++A+ GE E A  VF++    DA
Sbjct: 169 LRSC---NGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDA 225

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           + + ++I G+A     D A +LF  M  +   F+  ++T+ +VL AC  +  LELG    
Sbjct: 226 IVWNSIIGGFAQNSRSDVALELFKRM--KRAGFIAEQATLTSVLRACTGLALLELG---- 279

Query: 257 SLIEGH----GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
             ++ H        +L + NAL+DMY KCG L  A  +F  +++RDVI+W+ MI G    
Sbjct: 280 --MQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQN 337

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
              +EAL LF +M  S  +PN +T + VL AC++ G L+ G W   Y  ++ +KL  +  
Sbjct: 338 GYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDG-W---YYFRSMKKLYGID- 392

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
                                          +  MI  L   GK D A+ L + M  E  
Sbjct: 393 --------------------------PVREHYGCMIDLLGKAGKLDDAVKLLNEMECE-- 424

Query: 433 QPDDITFVGVLSAC 446
            PD +T+  +L AC
Sbjct: 425 -PDAVTWRTLLGAC 437



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 184/367 (50%), Gaps = 39/367 (10%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           ++L  C  M +++ +H  IIK GL +  F  S LI++ A    G+   AL VF+ +   +
Sbjct: 167 SVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFA--KLGEPEDALSVFDEMVTGD 224

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
            ++WN+II G + +S   VA++ + RM  +GF+    T   +L++C  ++ +  G Q H 
Sbjct: 225 AIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHV 284

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
           H++K   + D  ++ +L++MY + G LE A  VFN+   RD ++++ +I+G A  GY  +
Sbjct: 285 HIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQE 342

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVTNA 273
           A +LF+ M  +     PN  T+V VL AC+H G LE G  +  S+ + +G+         
Sbjct: 343 ALKLFERM--KSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGC 400

Query: 274 LIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQM------- 325
           +ID+  K G L  A  L   +E + D ++W  ++G      +   A    +++       
Sbjct: 401 MIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPED 460

Query: 326 -----LQSNIEPNDVTFLSV--------------LPACAYLGALDLGKWIHAYI--DKNH 364
                L SNI  N   + SV               P C++   +++ K IHA+I  D +H
Sbjct: 461 AGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSW---IEVNKQIHAFIIGDNSH 517

Query: 365 QKLNNVS 371
            ++  VS
Sbjct: 518 PQIVEVS 524


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 247/674 (36%), Positives = 386/674 (57%), Gaps = 11/674 (1%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ++L  C    ++   ++VH+ +++         ++ LI +      GD+  A ++F+ + 
Sbjct: 140 SVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITM--YVKCGDVVSARMLFDKMP 197

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             +++ WN +I G+  +   +  ++ + RM      P+  T   ++ +C  +     G Q
Sbjct: 198 TRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQ 257

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +H++V++   + +  V+ SLI MY   G  + A  VF+    RD VS+T +I+G      
Sbjct: 258 LHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLL 317

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
            D A + +  M I     +P+E T+ +VLSACA +G L++G  +  L E  G    + V 
Sbjct: 318 PDKALETYKTMEI--TGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVA 375

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N+LIDMYSKC  + KA ++F  I  +DVISW  +I G    +   EAL+ FR+M+  + +
Sbjct: 376 NSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKS-K 434

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           PN VT +S L ACA +GAL  GK IHA+  K     +   L  +++D+Y +CG ++ A  
Sbjct: 435 PNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGF-LPNAILDLYVRCGRMRTALN 493

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
            F+ +  K + +WN +++G A  GK    + LF RM+   + PDD+TF+ +L AC+ +G+
Sbjct: 494 QFN-LNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGM 552

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           +  G +YF  M  +Y I+P L+HY C+VDLLGRAG  +EA   ++ M +KPD AIW +LL
Sbjct: 553 VTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALL 612

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
            ACR+H  + LGE  A+H+ + + E+ G Y+LL N+YA +G+WD+VA +R  + ++G+  
Sbjct: 613 NACRIHRHVLLGELAAQHIFKQDAESIGYYILLCNLYADSGKWDEVAKVRRTMKEEGLIV 672

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
            PGCS +EV   VH FL GD  HPQ + I  +L+     ++ SGF       + D  +  
Sbjct: 673 DPGCSWVEVKGKVHAFLSGDNFHPQMQEINVVLEGFYEKMKTSGFNGQECSSM-DGIQTS 731

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           K      HSE+ AIAY LI++ PG  I + KNL +C +CHS  K ISKI  REI  RD  
Sbjct: 732 KADIFCGHSERQAIAYSLINSAPGMPIWVTKNLYMCQSCHSTVKFISKIVRREISVRDTE 791

Query: 692 RFHHFKDGNCSCND 705
           +FHHFKDG CSC D
Sbjct: 792 QFHHFKDGLCSCGD 805



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 151/477 (31%), Positives = 245/477 (51%), Gaps = 16/477 (3%)

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
           FGD+  A  VF  + E +   WN ++ G++ +     A+  Y R++ +G  P+ YTFP +
Sbjct: 82  FGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPSV 141

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L+SCA    +  G+++HAHV++   + D  V  +LI MY + G++ SAR++F+K   RD 
Sbjct: 142 LRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDR 201

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           +S+ A+I+GY       +  +LF  M  RE +  P+  T+ +V+SAC  +G   LG  + 
Sbjct: 202 ISWNAMISGYFENDECLEGLELFFRM--RELSIDPDLMTMTSVISACELLGDERLGTQLH 259

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
           S +       N+ V N+LI MY   G   +A  +F  +E RDV+SW  +I G        
Sbjct: 260 SYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPD 319

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           +AL  ++ M  +   P++VT  SVL ACA LG LD+G  +H   ++    L  V +  SL
Sbjct: 320 KALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHIL-YVVVANSL 378

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           IDMY+KC  I+ A ++F  +  K + SW ++I+GL ++ +  +AL  F +MI +  +P+ 
Sbjct: 379 IDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKS-KPNS 437

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG----CMVDLLGRAGLFDEAE 492
           +T +  LSAC   G L  G++     I  + +   +   G     ++DL  R G    A 
Sbjct: 438 VTLISALSACARVGALMCGKE-----IHAHALKAGMGFDGFLPNAILDLYVRCGRMRTAL 492

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549
                 E   D   W  LL      G+  +   + K ++E E  NP     +S + A
Sbjct: 493 NQFNLNE--KDVGAWNILLTGYAQKGKGAMVMELFKRMVESEI-NPDDVTFISLLCA 546



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 126/393 (32%), Positives = 198/393 (50%), Gaps = 16/393 (4%)

Query: 133 FPFILKSCAKISAISEGKQIHAHVLK-LGLESDPFVHTSLINMYAQNGELESARLVFNKS 191
           F  +++ C      SEG+ +   VL  L       +  +L++M+ + G++ +A  VF + 
Sbjct: 36  FVALIRLCENKRGYSEGEYVWKAVLSSLVTLLSVRLGNALLSMFVRFGDVGNAWNVFGRM 95

Query: 192 SLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL 251
             RD  S+  L+ GY   G+ D+A  L+    I      P+  T  +VL +CA    L  
Sbjct: 96  GERDLFSWNVLVGGYTKAGFFDEALCLYHR--ILWAGIRPDVYTFPSVLRSCAGAMDLVR 153

Query: 252 GNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311
           G  V + +       ++ V NALI MY KCGD+V AR LF+ +  RD ISWN MI GY  
Sbjct: 154 GREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFE 213

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
             +  E L LF +M + +I+P+ +T  SV+ AC  LG   LG  +H+Y+ +      N+S
Sbjct: 214 NDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYD-GNIS 272

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
           ++ SLI MY   G+ K AE VF GM  + + SW  +ISG   +   DKAL  +  M   G
Sbjct: 273 VYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITG 332

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
             PD++T   VLSAC   G LD+G +        ++++ +  H   +V       ++ + 
Sbjct: 333 TMPDEVTIASVLSACASLGQLDMGMKL-------HELAERTGHILYVVVANSLIDMYSKC 385

Query: 492 EALLKTMEM-----KPDAAIWTSLLGACRVHGR 519
           + + K +E+       D   WTS++   R++ R
Sbjct: 386 KRIEKALEIFHQIPDKDVISWTSVINGLRINNR 418



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 123/285 (43%), Gaps = 38/285 (13%)

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
           + + ++AL     M +  I   +  F++++  C        G+++   +  +   L +V 
Sbjct: 11  SGNLEQALKHLASMQEVKIPVEEDCFVALIRLCENKRGYSEGEYVWKAVLSSLVTLLSVR 70

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
           L  +L+ M+ + G++  A  VF  MG + L SWN ++ G    G  D+AL L+ R++  G
Sbjct: 71  LGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAG 130

Query: 432 LQPDDITFVGVLSACNHAGLLDI--GRQ---------------YFNAMIQDYKISPKLQH 474
           ++PD  TF  VL +C  AG +D+  GR+                 NA+I  Y     +  
Sbjct: 131 IRPDVYTFPSVLRSC--AGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVS 188

Query: 475 YGCMVDLLGR----------AGLFDEAEAL--------LKTMEMKPDAAIWTSLLGACRV 516
              + D +            +G F+  E L        ++ + + PD    TS++ AC +
Sbjct: 189 ARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACEL 248

Query: 517 HGRLELGESVAKHLLELEPE-NPGAYVLLSNMYAGAGRWDDVATI 560
            G   LG  +  +++    + N   Y  L  MY   G W +  ++
Sbjct: 249 LGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESV 293


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 259/659 (39%), Positives = 388/659 (58%), Gaps = 8/659 (1%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           ++VH+ +++ G       L+ L+ + A    GD+  A  VF+++   + + WN +I GH 
Sbjct: 215 REVHAHVLRFGFAEEVDVLNALMTMYA--KCGDVVAARKVFDSMAVMDCISWNAMIAGHF 272

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +      ++ ++ M+     PN  T   +  +   +S I+  K++H   +K G  +D  
Sbjct: 273 ENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDVA 332

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
              SLI MYA  G +  AR VF++   RDA+S+TA+I+GY   G+ D A +++  M +  
Sbjct: 333 FCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEV-- 390

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
            N  P++ T+ + L+ACA +GSL++G  +  L E  G  S + VTNAL++MY+K   + K
Sbjct: 391 NNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDK 450

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A ++F+ + ++DV+SW+ MI G+       EAL  FR ML ++++PN VTF++ L ACA 
Sbjct: 451 AIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHML-ADVKPNSVTFIAALAACAA 509

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
            GAL  GK IHA++ +         L  +LID+Y KCG    A   F   G K + SWN 
Sbjct: 510 TGALRSGKEIHAHVLRCGIAYEGY-LPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNI 568

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
           MI+G   HG  + ALS F++M+  G  PD++TFV +L AC+  G++  G + F++M   Y
Sbjct: 569 MIAGFVAHGNGETALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKY 628

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
            I P L+HY CMVDLL R G   EA   +  M + PDAA+W +LL  CR+H  +ELGE  
Sbjct: 629 SIVPNLKHYACMVDLLSRVGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELA 688

Query: 527 AKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHE 586
           AK++LELEP + G +VLL ++YA AG WD +A +R  + +KG+    GCS +EV  VVH 
Sbjct: 689 AKYVLELEPNDAGYHVLLCDLYADAGIWDKLARVRKTMREKGLDHDSGCSWVEVKGVVHA 748

Query: 587 FLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIA 646
           FL  D+ HPQ + I  +L+ I   ++ SG  P  S      D+  K+     HSE+LA+A
Sbjct: 749 FLTDDESHPQIREINTVLEGIYERMKASGCAPVESH--SPEDKVLKDDIFCGHSERLAVA 806

Query: 647 YGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCND 705
           +GLI+T PGT+I + KN   C +CH   K+IS I  R+II RD  + HHFKDG+CSC D
Sbjct: 807 FGLINTTPGTSISVTKNQYTCQSCHRILKMISYIVRRDIIVRDSKQVHHFKDGSCSCGD 865



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 133/457 (29%), Positives = 238/457 (52%), Gaps = 6/457 (1%)

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
           FG+  +A  VF  + E +   WN ++ G+  +     A+  Y RM+ +G  P+ YTFP +
Sbjct: 142 FGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRPDVYTFPCV 201

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L+SC  +     G+++HAHVL+ G   +  V  +L+ MYA+ G++ +AR VF+  ++ D 
Sbjct: 202 LRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDC 261

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           +S+ A+I G+   G  +   +LF  + + ++   PN  T+ +V  A   +  +     + 
Sbjct: 262 ISWNAMIAGHFENGECNAGLELF--LTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMH 319

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
            L    G  +++   N+LI MY+  G + +AR +F  ++ RD +SW  MI GY       
Sbjct: 320 GLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPD 379

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           +AL ++  M  +N+ P+D+T  S L ACA LG+LD+G  +H  + ++   ++ V +  +L
Sbjct: 380 KALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHE-LAESKGFMSYVVVTNAL 438

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           ++MYAK   I  A +VF  M  K + SW++MI+G   + +  +AL  F  M+ + ++P+ 
Sbjct: 439 LEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLAD-VKPNS 497

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
           +TF+  L+AC   G L  G++  +A +    I+ +      ++DL  + G    A A   
Sbjct: 498 VTFIAALAACAATGALRSGKE-IHAHVLRCGIAYEGYLPNALIDLYVKCGQTGYAWAQFC 556

Query: 497 TMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL 533
               K D   W  ++     HG  E   S    ++++
Sbjct: 557 AHGAK-DVVSWNIMIAGFVAHGNGETALSFFNQMVKI 592



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 124/419 (29%), Positives = 193/419 (46%), Gaps = 22/419 (5%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHV--------LKLGLESDPFVHTSLINMYAQNG 179
           P+   +  + + C    A+  G +  AH         L+LG         ++++M  + G
Sbjct: 92  PDEDAYVALFRLCEWRRAVEPGLRACAHADDRHAWFGLRLG--------NAMLSMLVRFG 143

Query: 180 ELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTV 239
           E   A  VF K   RD  S+  ++ GY   G L++A  L+  M        P+  T   V
Sbjct: 144 ETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRM--MWAGVRPDVYTFPCV 201

Query: 240 LSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV 299
           L +C  +    +G  V + +   G    + V NAL+ MY+KCGD+V AR +F+S+   D 
Sbjct: 202 LRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDC 261

Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
           ISWN MI G+    +    L LF  MLQ  ++PN +T  SV  A   L  +   K +H  
Sbjct: 262 ISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGL 321

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADK 419
             K      +V+   SLI MYA  G +  A  VF  M  +   SW AMISG   +G  DK
Sbjct: 322 AVKRGFA-TDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDK 380

Query: 420 ALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479
           AL +++ M    + PDDIT    L+AC   G LD+G +  + + +       +     ++
Sbjct: 381 ALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVK-LHELAESKGFMSYVVVTNALL 439

Query: 480 DLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL-GACRVHGRLELGESVAKHLLELEPEN 537
           ++  ++   D+A  + K M  K D   W+S++ G C  H   E        L +++P +
Sbjct: 440 EMYAKSKRIDKAIEVFKCMPEK-DVVSWSSMIAGFCFNHRNFEALYYFRHMLADVKPNS 497


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 242/582 (41%), Positives = 352/582 (60%), Gaps = 5/582 (0%)

Query: 127 VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARL 186
           V     F  IL+ CA+  A+ E K  H   +++ L+ D  +   LIN Y++ G +E AR 
Sbjct: 60  VVQASDFIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQ 119

Query: 187 VFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC-AH 245
           VF+    R  VS+  +I  Y       +A  +F EM  R E F  +E T+ +VLSAC A+
Sbjct: 120 VFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEM--RNEGFKFSEFTISSVLSACGAN 177

Query: 246 MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVM 305
             +LE     C L     L  NL+V  AL+D+Y+KCG +  A  +FES++ +  ++W+ M
Sbjct: 178 CDALECKKLHC-LSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSM 236

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365
           + GY  + +Y+EAL+L+R+  + ++E N  T  SV+ AC+ L AL  GK +HA I K+  
Sbjct: 237 VAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGF 296

Query: 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
             +NV + +S +DMYAKCG+++ +  +F  +  K +  WN +ISG A H +  + + LF 
Sbjct: 297 G-SNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFE 355

Query: 426 RMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485
           +M  +G+ P+++TF  +LS C H GL++ GR++F  M   Y +SP + HY CMVD+LGRA
Sbjct: 356 KMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRA 415

Query: 486 GLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545
           GL  EA  L+K++  +P A+IW SLL +CRV   LEL E  AK L ELEPEN G +VLLS
Sbjct: 416 GLLSEAYELIKSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVLLS 475

Query: 546 NMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLD 605
           N+YA   +W+++A  R  L D  +KKV G S I++   VH F VG+  HP+ + I  MLD
Sbjct: 476 NIYAANKQWEEIAKSRKLLRDCDVKKVRGQSWIDIKDKVHIFRVGESSHPRIREICTMLD 535

Query: 606 EIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLR 665
            +   L K G+ P     L+D++   KE  L  HSEKLA+ +GL+    G+T+RI+KNLR
Sbjct: 536 NLVIELRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPEGSTVRIMKNLR 595

Query: 666 VCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +C +CH   K  S    R II RD NRFHHF DG+CSC ++W
Sbjct: 596 ICVDCHEFMKAASMATRRFIIVRDANRFHHFSDGHCSCGEFW 637



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 202/396 (51%), Gaps = 8/396 (2%)

Query: 18  PPSSDPPYKLLQNQPSLALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAV 74
           P      + ++Q    + +L  C     +   K  H + ++  L      LS ++ I A 
Sbjct: 51  PGRYSDEFNVVQASDFIEILQLCARNGAVMEAKACHGKTMRMELQG-DVTLSNVL-INAY 108

Query: 75  SPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFP 134
           S  G +  A  VF+ + E + V WN +I  ++ +     A+  +  M   GF  + +T  
Sbjct: 109 SKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTIS 168

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
            +L +C       E K++H   +K  L+ + +V T+L+++YA+ G +  A  VF     +
Sbjct: 169 SVLSACGANCDALECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDK 228

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
            +V++++++ GY      ++A  L+     +  +   N+ T+ +V+ AC+++ +L  G  
Sbjct: 229 SSVTWSSMVAGYVQSKNYEEALLLYRRA--QRMSLEQNQFTLSSVICACSNLAALIEGKQ 286

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           + ++I   G GSN+ V ++ +DMY+KCG L ++  +F  ++++++  WN +I G+   + 
Sbjct: 287 MHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHAR 346

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
            KE ++LF +M Q  + PN+VTF S+L  C + G ++ G+     +   +    NV  ++
Sbjct: 347 PKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYS 406

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMIS 409
            ++D+  + G +  A ++   + ++  AS W ++++
Sbjct: 407 CMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLA 442


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 272/780 (34%), Positives = 408/780 (52%), Gaps = 115/780 (14%)

Query: 37  LSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFG---DLSYALLVFETI 90
           L  CT + +I    ++H  +IK G     F L   +    ++ +G    L  A  VF  +
Sbjct: 140 LKTCTRVMDIWLGMEIHGCLIKRG-----FDLDVYLRCALMNFYGRCWGLEKANQVFHEM 194

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
             P  ++WN  I  +  S      ++ + +M  S     T T   +L++C K+ A++  K
Sbjct: 195 PNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAK 254

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           QIH +V + GL+SD  +   LI+MY++NG+LE AR VF+    R+  S+ ++I+ YA+ G
Sbjct: 255 QIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALG 314

Query: 211 YLDDARQLFDEMP---------------------------------IREENFVPNESTVV 237
           +L+DA  LF E+                                  ++ E F PN S++ 
Sbjct: 315 FLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMT 374

Query: 238 TVLSACAHMGSLELGN----------WVCSL----------IEGHGLGS----------- 266
           +VL A + +G L +G           + C +          ++ H L S           
Sbjct: 375 SVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNR 434

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKR----DVISWNVMIGGY------------- 309
           N+   N+L+  YS  G    A  L   +EK     D+++WN MI GY             
Sbjct: 435 NIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVL 494

Query: 310 ----------------------THTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347
                                 +   + +++L  F QM Q  + PN  +   +L ACA L
Sbjct: 495 HQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASL 554

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
             L  GK IH    +N   + +V + T+LIDMY+K  ++K A +VF  +  KTLASWN M
Sbjct: 555 SLLQKGKEIHCLSIRN-GFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCM 613

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           I G A+ G   +A+S+F+ M   G+ PD ITF  +LSAC ++GL+  G +YF++MI DY+
Sbjct: 614 IMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYR 673

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
           I P+L+HY CMVDLLGRAG  DEA  L+ TM +KPDA IW +LLG+CR+H  L+  E+ A
Sbjct: 674 IVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAA 733

Query: 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF 587
           K+L +LEP N   Y+L+ N+Y+   RW+D+  +R  +   G++     S I++   VH F
Sbjct: 734 KNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVF 793

Query: 588 LVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAY 647
              +K HP +  IY  L ++ + ++K G+VPD + V  +MDE  K+  L  H+EKLAI Y
Sbjct: 794 SSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITY 853

Query: 648 GLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           GLI  K G  IR++KN R+C +CHSA K IS +  RE+  RD  RFHHF++G CSCND+W
Sbjct: 854 GLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 913



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 158/596 (26%), Positives = 280/596 (46%), Gaps = 55/596 (9%)

Query: 19  PSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFG 78
           P   P  KL  +  S    +  T++ ++K +H+Q+IK        A +K + I +   FG
Sbjct: 22  PIKTPTSKLYLDSHSSDDSNVITSLTSVKMMHAQMIKLPQKWNPDAAAKNL-ISSYLGFG 80

Query: 79  DLSYALLVFETIREPNQVIWNNIIRGHSLSSSPV-VAIKFYVRMILSGFVPNTYTFPFIL 137
           D   A +VF      N + WN+ +     S+  + + ++ +  +   G V ++  +   L
Sbjct: 81  DFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVAL 140

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
           K+C ++  I  G +IH  ++K G + D ++  +L+N Y +   LE A  VF++    +A+
Sbjct: 141 KTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEAL 200

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNES-TVVTVLSACAHMGSLELGNWVC 256
            +   I        L    +LF +M     +F+  E+ T+V VL AC  MG+L     + 
Sbjct: 201 LWNEAIILNLQSEKLQKGVELFRKMQF---SFLKAETATIVRVLQACGKMGALNAAKQIH 257

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYT------ 310
             +   GL S++ + N LI MYSK G L  AR +F+S+E R+  SWN MI  Y       
Sbjct: 258 GYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLN 317

Query: 311 ---------HTSDYK--------------------EALMLFRQMLQSNIEPNDVTFLSVL 341
                     +SD K                    E L + ++M     +PN  +  SVL
Sbjct: 318 DAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVL 377

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
            A + LG L++GK  H Y+ +N     +V + TSLIDMY K  ++ +A+ VFD M  + +
Sbjct: 378 QAISELGFLNMGKETHGYVLRNGFDC-DVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNI 436

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
            +WN+++SG +  G  + AL L ++M  EG++PD +T+ G++S      +   G++    
Sbjct: 437 FAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISG---YAMWGCGKEALAV 493

Query: 462 MIQ--DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK---PDAAIWTSLLGACRV 516
           + Q     ++P +  +  ++    +AG   ++      M+ +   P++A  T LL AC  
Sbjct: 494 LHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACAS 553

Query: 517 HGRLELGESVAKHLLELEP---ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
              L+ G+ +  H L +     E+      L +MY+ +    +   +  R+ +K +
Sbjct: 554 LSLLQKGKEI--HCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTL 607


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/437 (49%), Positives = 296/437 (67%), Gaps = 1/437 (0%)

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
             A++   +  G+   AR+LF+ + +RD ++WN MI GY HT   +EAL LF +M  +  
Sbjct: 271 VTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGA 330

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
              +VT +S L ACA LGAL+ GKW+H+       +L+ V+L T+LIDMY+KCG + AA 
Sbjct: 331 AVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLS-VTLGTALIDMYSKCGAVAAAM 389

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           +VFD MG + + +W + +SGLAM+G     L+LF RM   G++P+ +TFV VL  C+ AG
Sbjct: 390 EVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAG 449

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L+D GR  F++M  ++ I P L+HYGCMVDL GRAG  D+A   +  M ++P   +W +L
Sbjct: 450 LVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGAL 509

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           L A R+H  +ELG+     L+ +E +N  A+VLLSN+YA +  W  V+ +R  +  KG+K
Sbjct: 510 LNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVK 569

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           KVPGCS+IEVG  VHEF VG K HP+ K I  ML E++  L   G++ +T EVL+D++EE
Sbjct: 570 KVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEE 629

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KE A+S HSEKLAIA+GL++      IRIVKNLRVC +CH  TK+ISK+FNREI+ RDR
Sbjct: 630 DKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDR 689

Query: 691 NRFHHFKDGNCSCNDYW 707
           NRFHHFKDG CSC DYW
Sbjct: 690 NRFHHFKDGACSCKDYW 706



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 114/425 (26%), Positives = 203/425 (47%), Gaps = 53/425 (12%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGL-----HNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           L +  ++ ++++++H+ ++ +G      H   F  S           GDLSYA L+    
Sbjct: 99  LAAAASSQRHLREIHAHLLVSGRIASPSHLAAFLASLASSSSDDDDDGDLSYARLLLP-- 156

Query: 91  REPNQVIW-NNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG 149
           R P  ++  N+++R  +    P +A   +  + L+   P+ Y+F F++++   ++A +  
Sbjct: 157 RRPATLLAHNSLLRALARGRRPHLAFGAFRDLPLA---PDNYSFTFLVRAATALAAAAAS 213

Query: 150 K--------QIHAHVLKLGLESDPFVHTSLINMYA------------------------- 176
                     +HA  L+ G   DP V +  ++MYA                         
Sbjct: 214 ALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTA 273

Query: 177 ------QNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV 230
                   GE ++AR +F+    RD V++ A+I GY   G   +A +LFDEM  R     
Sbjct: 274 MVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEM--RHAGAA 331

Query: 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDL 290
             E T+V+ L+ACA +G+LE G WV S     G+  ++ +  ALIDMYSKCG +  A ++
Sbjct: 332 VGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEV 391

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350
           F+S+ +R+V +W   + G       ++ L LF++M  + +EPN VTF+ VL  C+  G +
Sbjct: 392 FDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLV 451

Query: 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMIS 409
           D G+     +  NH     +  +  ++D+Y + G +  A    +GM  +     W A+++
Sbjct: 452 DEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLN 511

Query: 410 GLAMH 414
              +H
Sbjct: 512 ASRIH 516


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/437 (49%), Positives = 296/437 (67%), Gaps = 1/437 (0%)

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
             A++   +  G+   AR+LF+ + +RD ++WN MI GY HT   +EAL LF +M  +  
Sbjct: 271 VTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGA 330

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
              +VT +S L ACA LGAL+ GKW+H+       +L+ V+L T+LIDMY+KCG + AA 
Sbjct: 331 AVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLS-VTLGTALIDMYSKCGAVAAAM 389

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           +VFD MG + + +W + +SGLAM+G     L+LF RM   G++P+ +TFV VL  C+ AG
Sbjct: 390 EVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAG 449

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L+D GR  F++M  ++ I P L+HYGCMVDL GRAG  D+A   +  M ++P   +W +L
Sbjct: 450 LVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGAL 509

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           L A R+H  +ELG+     L+ +E +N  A+VLLSN+YA +  W  V+ +R  +  KG+K
Sbjct: 510 LNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVK 569

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           KVPGCS+IEVG  VHEF VG K HP+ K I  ML E++  L   G++ +T EVL+D++EE
Sbjct: 570 KVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEE 629

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KE A+S HSEKLAIA+GL++      IRIVKNLRVC +CH  TK+ISK+FNREI+ RDR
Sbjct: 630 DKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDR 689

Query: 691 NRFHHFKDGNCSCNDYW 707
           NRFHHFKDG CSC DYW
Sbjct: 690 NRFHHFKDGACSCKDYW 706



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 115/425 (27%), Positives = 203/425 (47%), Gaps = 53/425 (12%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGL-----HNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           L +  ++ ++++++H+ ++ +G      H   F  S           GDLSYA L+    
Sbjct: 99  LAAAASSQRHLREIHAHLLVSGRIASPSHLAAFLASLASSSSDDDDDGDLSYARLLLP-- 156

Query: 91  REPNQVIW-NNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG 149
           R P  ++  N+++R  +    P +A   +  + L   VP+ Y+F F++++   ++A +  
Sbjct: 157 RRPATLLAHNSLLRALARGRRPHLAFGAFRDLPL---VPDNYSFTFLVRAATALAAAAAS 213

Query: 150 K--------QIHAHVLKLGLESDPFVHTSLINMYA------------------------- 176
                     +HA  L+ G   DP V +  ++MYA                         
Sbjct: 214 ALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTA 273

Query: 177 ------QNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV 230
                   GE ++AR +F+    RD V++ A+I GY   G   +A +LFDEM  R     
Sbjct: 274 MVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEM--RHAGAA 331

Query: 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDL 290
             E T+V+ L+ACA +G+LE G WV S     G+  ++ +  ALIDMYSKCG +  A ++
Sbjct: 332 VGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEV 391

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350
           F+S+ +R+V +W   + G       ++ L LF++M  + +EPN VTF+ VL  C+  G +
Sbjct: 392 FDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLV 451

Query: 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMIS 409
           D G+     +  NH     +  +  ++D+Y + G +  A    +GM  +     W A+++
Sbjct: 452 DEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLN 511

Query: 410 GLAMH 414
              +H
Sbjct: 512 ASRIH 516


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/437 (49%), Positives = 296/437 (67%), Gaps = 1/437 (0%)

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
             A++   +  G+   AR+LF+ + +RD ++WN MI GY HT   +EAL LF +M  +  
Sbjct: 264 VTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGA 323

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
              +VT +S L ACA LGAL+ GKW+H+       +L+ V+L T+LIDMY+KCG + AA 
Sbjct: 324 AVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLS-VTLGTALIDMYSKCGAVAAAM 382

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           +VFD MG + + +W + +SGLAM+G     L+LF RM   G++P+ +TFV VL  C+ AG
Sbjct: 383 EVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAG 442

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L+D GR  F++M  ++ I P L+HYGCMVDL GRAG  D+A   +  M ++P   +W +L
Sbjct: 443 LVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGAL 502

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           L A R+H  +ELG+     L+ +E +N  A+VLLSN+YA +  W  V+ +R  +  KG+K
Sbjct: 503 LNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVK 562

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           KVPGCS+IEVG  VHEF VG K HP+ K I  ML E++  L   G++ +T EVL+D++EE
Sbjct: 563 KVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEE 622

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KE A+S HSEKLAIA+GL++      IRIVKNLRVC +CH  TK+ISK+FNREI+ RDR
Sbjct: 623 DKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDR 682

Query: 691 NRFHHFKDGNCSCNDYW 707
           NRFHHFKDG CSC DYW
Sbjct: 683 NRFHHFKDGACSCKDYW 699



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 114/425 (26%), Positives = 203/425 (47%), Gaps = 53/425 (12%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGL-----HNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           L +  ++ ++++++H+ ++ +G      H   F  S           GDLSYA L+    
Sbjct: 92  LAAAASSQRHLREIHAHLLVSGRIASPSHLAAFLASLASSSSDDDDDGDLSYARLLLP-- 149

Query: 91  REPNQVIW-NNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG 149
           R P  ++  N+++R  +    P +A   +  + L+   P+ Y+F F++++   ++A +  
Sbjct: 150 RRPATLLAHNSLLRALARGRRPHLAFGAFRDLPLA---PDNYSFTFLVRAATALAAAAAS 206

Query: 150 K--------QIHAHVLKLGLESDPFVHTSLINMYA------------------------- 176
                     +HA  L+ G   DP V +  ++MYA                         
Sbjct: 207 ALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTA 266

Query: 177 ------QNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV 230
                   GE ++AR +F+    RD V++ A+I GY   G   +A +LFDEM  R     
Sbjct: 267 MVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEM--RHAGAA 324

Query: 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDL 290
             E T+V+ L+ACA +G+LE G WV S     G+  ++ +  ALIDMYSKCG +  A ++
Sbjct: 325 VGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEV 384

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350
           F+S+ +R+V +W   + G       ++ L LF++M  + +EPN VTF+ VL  C+  G +
Sbjct: 385 FDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLV 444

Query: 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMIS 409
           D G+     +  NH     +  +  ++D+Y + G +  A    +GM  +     W A+++
Sbjct: 445 DEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLN 504

Query: 410 GLAMH 414
              +H
Sbjct: 505 ASRIH 509


>gi|297743669|emb|CBI36552.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 255/721 (35%), Positives = 394/721 (54%), Gaps = 55/721 (7%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L L+++ + +  + Q H+QII  GLHN    ++KL     +S    +  A L+F TI  P
Sbjct: 14  LTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTH--KLSHLKAIDQASLLFSTIPNP 71

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG-FVPNTYTFPFILKSCAKISAISEGKQI 152
           +  ++N +IR  SL++SP  A+  Y  +  S    P+ +T+ F++   + +         
Sbjct: 72  DLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAH 131

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
               +  G  SD FV ++++  Y +   + +AR VF+    RD V +  +++G       
Sbjct: 132 S---IVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCF 188

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           D+A  +F +M      F  + +TV  VL   A +  L LG  +  L    G  S+ +V  
Sbjct: 189 DEAILIFGDMVKGGIGF--DSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVIT 246

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            L  +YSKCG++  AR LF  I + D++S+N MI GYT  ++ + ++ LF+++L S  + 
Sbjct: 247 GLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKV 306

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N  + + ++P     G L L + IH +  K+    N+    T+L  +Y++   I++A  +
Sbjct: 307 NSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVS-TALTTVYSRLNEIESARLL 365

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM------------------------- 427
           FD    K+LASWNAMISG A +G  +KA+SLF  M                         
Sbjct: 366 FDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGAL 425

Query: 428 ---------------------IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
                                +   + P  +TF+ VL AC+HAGL+  G + F +M+ D+
Sbjct: 426 SLGKWVHDLINRESFESNIFMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDH 485

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
              P  +HY CMVDLLGRAG  D+A   ++ M ++P   +W +LLGAC +H    L    
Sbjct: 486 GFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLA 545

Query: 527 AKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHE 586
           +  L EL+P+N G YVLLSN+Y+    + + A++R  +  + + K PGC+ IEV + +H 
Sbjct: 546 SDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHI 605

Query: 587 FLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIA 646
           F  GD+ HPQ+  IY ML+++   + ++GF  +T   L+D++EE KE  +  HSEKLAIA
Sbjct: 606 FTSGDQSHPQATAIYAMLEKLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIA 665

Query: 647 YGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDY 706
           +GLI+++PGT IRI+KNLRVC +CH+ATK ISKI  R I+ RD NRFHHFKDG CSC DY
Sbjct: 666 FGLITSEPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGICSCGDY 725

Query: 707 W 707
           W
Sbjct: 726 W 726


>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15340, mitochondrial; Flags: Precursor
 gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
 gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 242/623 (38%), Positives = 373/623 (59%), Gaps = 60/623 (9%)

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDP--FVHTSLINMYAQNGELESARLVFNKSS 192
            +L+ CA  S +  GK++HA +   GL+  P  ++  +L   YA +GE+ +A+ +F++  
Sbjct: 11  LLLRHCAHRSFLRPGKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIP 70

Query: 193 L--RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250
           L  +D V +T L++ ++  G L ++ +LF EM  R +    ++ +VV +   CA +  L 
Sbjct: 71  LSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEM--RRKRVEIDDVSVVCLFGVCAKLEDLG 128

Query: 251 LGNWVCSLIEGHGLG------SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
                    +GHG+       +++ V NAL+DMY KCG + + + +FE +E++ V+SW V
Sbjct: 129 FAQ------QGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTV 182

Query: 305 -------------------------------MIGGYTHTSDYKEALMLFRQML-QSNIEP 332
                                          M+ GY      +E L L  +M+ +     
Sbjct: 183 VLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGL 242

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL------NNVSLWTSLIDMYAKCGNI 386
           N VT  S+L ACA  G L +G+W+H Y  K    +      ++V + T+L+DMYAKCGNI
Sbjct: 243 NFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNI 302

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
            ++  VF  M  + + +WNA+ SGLAMHGK    + +F +MI E ++PDD+TF  VLSAC
Sbjct: 303 DSSMNVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIRE-VKPDDLTFTAVLSAC 361

Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
           +H+G++D G + F+++ + Y + PK+ HY CMVDLLGRAGL +EAE L++ M + P+  +
Sbjct: 362 SHSGIVDEGWRCFHSL-RFYGLEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVV 420

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
             SLLG+C VHG++E+ E + + L+++ P N    +L+SNMY   GR D    +R  L  
Sbjct: 421 LGSLLGSCSVHGKVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRK 480

Query: 567 KGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVL-- 624
           +G++K+PG SSI V   VH F  GD+ HP++K IY  L+E+   +  +G+VPD S ++  
Sbjct: 481 RGIRKIPGLSSIYVNDSVHRFSSGDRSHPRTKEIYLKLNEVIERIRSAGYVPDVSGLVSH 540

Query: 625 YDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNRE 684
            + D E KE AL  HSEKLA+ +GL+ TKP T + + KNLR+C +CHSA K++SK+++RE
Sbjct: 541 SEGDLEEKEQALCCHSEKLAVCFGLLETKPSTPLLVFKNLRICRDCHSAMKIVSKVYDRE 600

Query: 685 IIARDRNRFHHFKDGNCSCNDYW 707
           II RDRNRFH FK G+CSC+DYW
Sbjct: 601 IIIRDRNRFHQFKGGSCSCSDYW 623



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 143/331 (43%), Gaps = 51/331 (15%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           + +  KC  +  +K++  ++ +  + +    L  +++      +  L     VF  + E 
Sbjct: 153 MDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVK------WEGLERGREVFHEMPER 206

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILS-GFVPNTYTFPFILKSCAKISAISEGKQI 152
           N V W  ++ G+  +      ++    M+   G   N  T   +L +CA+   +  G+ +
Sbjct: 207 NAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWV 266

Query: 153 HAHVLK----LGLES---DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
           H + LK    +G E+   D  V T+L++MYA+ G ++S+  VF     R+ V++ AL +G
Sbjct: 267 HVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMRKRNVVTWNALFSG 326

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
            A  G     R + D  P       P++ T   VLSAC+H G ++ G W C     H L 
Sbjct: 327 LAMHG---KGRMVIDMFPQMIREVKPDDLTFTAVLSACSHSGIVDEG-WRCF----HSL- 377

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
              +     +D Y+   DL+    L E                        EA +L R+M
Sbjct: 378 -RFYGLEPKVDHYACMVDLLGRAGLIE------------------------EAEILMREM 412

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
               + PN+V   S+L +C+  G +++ + I
Sbjct: 413 ---PVPPNEVVLGSLLGSCSVHGKVEIAERI 440


>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
          Length = 619

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 248/565 (43%), Positives = 354/565 (62%), Gaps = 13/565 (2%)

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV---FNKSSLRDAVSYTALITGYA 207
           Q  A +LK GL ++P V T L    A         LV      S   DA     LI  +A
Sbjct: 60  QSLAFLLKSGLHANPLVLTRLFASSAAAAPALLEPLVAALLVPSVPIDAFLANTLIRAHA 119

Query: 208 SRGYLDDAR---QLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
           +   L  AR     F  + +R    +PN+ T   +L ACA    + +     +L    G 
Sbjct: 120 A-SPLPSARLRAASFFPLMLRSAT-LPNKFTFPFLLKACAAFPGVGVQAHAAAL--KFGF 175

Query: 265 GSNLHVTNALIDMYSKCGD--LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
            ++ +V+N LI MYS  G   L  AR++F+ + K   ++W+ MIGGY  +    +A+ LF
Sbjct: 176 TTDQYVSNTLIHMYSCFGGEFLGDARNVFDRMAKSSAVTWSAMIGGYVRSGLSSDAVGLF 235

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
           R+M  S + P++VT + VL A A LGAL+L +W+  +++K      +V+L  +LID  AK
Sbjct: 236 REMQASGVRPDEVTMIGVLAAAADLGALELARWVGRFVEKEGIG-KSVTLCNALIDALAK 294

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
           CG++  A  VF GM  +T+ SW ++I  LAM G+  +A+++F  M   G++PDD+ F+GV
Sbjct: 295 CGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGRGKEAVAVFEEMKTAGVRPDDVAFIGV 354

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
           L+AC+HAG++D G  YF +M   Y I PK++HYGCMVD+ GRAG+ + A   +  M MKP
Sbjct: 355 LTACSHAGMVDEGYGYFESMRMAYGIDPKIEHYGCMVDMFGRAGMVERAMEFVHKMPMKP 414

Query: 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562
           +  IW +L+ ACR HGRLELGE++ ++LL   P +   YV+LSN+YA   RW + + IR 
Sbjct: 415 NPIIWRTLVAACRAHGRLELGETITRNLLNEYPAHEANYVMLSNVYALTRRWKEKSEIRR 474

Query: 563 RLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSE 622
            ++ +G+KKVPGCS +E+   VHEF+ GD+ HPQ K IY M++E+   L ++G +  TSE
Sbjct: 475 EMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQWKEIYMMVEEMARELRRAGHISATSE 534

Query: 623 VLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFN 682
           VL D+DEE KE AL  HSEKLAIA+ L+ T PGT +R+VKNLRVC +CH+A K IS ++N
Sbjct: 535 VLLDLDEEDKEVALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAIKCISLVYN 594

Query: 683 REIIARDRNRFHHFKDGNCSCNDYW 707
           REII RDR+RFH FK+G+CSCND+W
Sbjct: 595 REIIVRDRSRFHRFKNGSCSCNDFW 619



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/408 (30%), Positives = 210/408 (51%), Gaps = 11/408 (2%)

Query: 30  NQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFET 89
            Q  L LL + +    + Q  + ++K+GLH     L++L    A +    L   +     
Sbjct: 42  EQHCLHLLERSSAPAAVLQSLAFLLKSGLHANPLVLTRLFASSAAAAPALLEPLVAALLV 101

Query: 90  IREP-NQVIWNNIIRGHSLSSSPVVAIK---FYVRMILSGFVPNTYTFPFILKSCAKISA 145
              P +  + N +IR H+ S  P   ++   F+  M+ S  +PN +TFPF+LK+CA    
Sbjct: 102 PSVPIDAFLANTLIRAHAASPLPSARLRAASFFPLMLRSATLPNKFTFPFLLKACAAFPG 161

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE--LESARLVFNKSSLRDAVSYTALI 203
           +  G Q HA  LK G  +D +V  +LI+MY+  G   L  AR VF++ +   AV+++A+I
Sbjct: 162 V--GVQAHAAALKFGFTTDQYVSNTLIHMYSCFGGEFLGDARNVFDRMAKSSAVTWSAMI 219

Query: 204 TGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG 263
            GY   G   DA  LF EM  +     P+E T++ VL+A A +G+LEL  WV   +E  G
Sbjct: 220 GGYVRSGLSSDAVGLFREM--QASGVRPDEVTMIGVLAAAADLGALELARWVGRFVEKEG 277

Query: 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFR 323
           +G ++ + NALID  +KCGDL  A  +F+ +++R ++SW  +I         KEA+ +F 
Sbjct: 278 IGKSVTLCNALIDALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGRGKEAVAVFE 337

Query: 324 QMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383
           +M  + + P+DV F+ VL AC++ G +D G      +   +     +  +  ++DM+ + 
Sbjct: 338 EMKTAGVRPDDVAFIGVLTACSHAGMVDEGYGYFESMRMAYGIDPKIEHYGCMVDMFGRA 397

Query: 384 GNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGE 430
           G ++ A +    M  K     W  +++    HG+ +   ++   ++ E
Sbjct: 398 GMVERAMEFVHKMPMKPNPIIWRTLVAACRAHGRLELGETITRNLLNE 445


>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/561 (42%), Positives = 350/561 (62%), Gaps = 8/561 (1%)

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           +Q HAH++  G      + T L+ +    G +   R +F   S  D+  + +LI   ++ 
Sbjct: 27  QQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKASSNF 86

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
           G+  DA   +  M       VP+  T  +V+ ACA +  L LG  V S +   G  SN  
Sbjct: 87  GFSLDAVFFYRRML--HSRIVPSTYTFTSVIKACADLSLLRLGTIVHSHVFVSGYASNSF 144

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           V  AL+  Y+K      AR +F+ + +R +I+WN MI GY       EA+ +F +M +S 
Sbjct: 145 VQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLASEAVEVFNKMRESG 204

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
            EP+  TF+SVL AC+ LG+LDLG W+H  I     ++N V L TSL++M+++CG++  A
Sbjct: 205 GEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMN-VVLATSLVNMFSRCGDVGRA 263

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
             VFD M    + SW AMISG  MHG   +A+ +F RM   G+ P+ +T+V VLSAC HA
Sbjct: 264 RAVFDSMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKACGVVPNRVTYVAVLSACAHA 323

Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM---EMKPDAAI 506
           GL++ GR  F +M Q+Y + P ++H+ CMVD+ GR GL +EA   ++ +   E+ P  A+
Sbjct: 324 GLINEGRLVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVRGLSSEELVP--AV 381

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
           WT++LGAC++H   +LG  VA++L+  EPENPG YVLLSNMYA AGR D V ++R  +  
Sbjct: 382 WTAMLGACKMHKNFDLGVEVAENLISAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQ 441

Query: 567 KGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYD 626
           +G+KK  G S+I+V +  + F +GDK HP++  IY  LDE+    + +G+ P     +++
Sbjct: 442 RGLKKQVGYSTIDVENRSYLFSMGDKSHPETNEIYCYLDELMWRCKDAGYAPAPESAMHE 501

Query: 627 MDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREII 686
           ++EE +E AL +HSEKLA+A+GL+ T  G T+RIVKNLR+C +CHSA K IS + NREII
Sbjct: 502 LEEEEREYALRYHSEKLAVAFGLMKTCHGVTLRIVKNLRICEDCHSAIKFISVVMNREII 561

Query: 687 ARDRNRFHHFKDGNCSCNDYW 707
            RD+ RFHHF++G+CSC+DYW
Sbjct: 562 VRDKLRFHHFREGSCSCSDYW 582



 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 137/434 (31%), Positives = 246/434 (56%), Gaps = 11/434 (2%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEI-CAVSPFGDLSYALLVFETIREP 93
           A++S   +++ ++Q H+ ++ TG H ++  L+KL+ + CA    G ++Y   +F ++ +P
Sbjct: 15  AVVSAGPHLRRLQQAHAHLVVTGCHRSRALLTKLLTLSCAA---GSIAYTRRLFRSVSDP 71

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           +  ++N++I+  S     + A+ FY RM+ S  VP+TYTF  ++K+CA +S +  G  +H
Sbjct: 72  DSFLFNSLIKASSNFGFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRLGTIVH 131

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
           +HV   G  S+ FV  +L+  YA++     AR VF++   R  +++ ++I+GY   G   
Sbjct: 132 SHVFVSGYASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLAS 191

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           +A ++F++M  RE    P+ +T V+VLSAC+ +GSL+LG W+   I G G+  N+ +  +
Sbjct: 192 EAVEVFNKM--RESGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVLATS 249

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           L++M+S+CGD+ +AR +F+S+ + +V+SW  MI GY       EA+ +F +M    + PN
Sbjct: 250 LVNMFSRCGDVGRARAVFDSMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKACGVVPN 309

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
            VT+++VL ACA+ G ++ G+ + A + + +  +  V     ++DM+ + G +  A Q  
Sbjct: 310 RVTYVAVLSACAHAGLINEGRLVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFV 369

Query: 394 DGMGYKTL--ASWNAMISGLAMHGKADKALSLFSRMI-GEGLQPDDITFVGVLSACNHAG 450
            G+  + L  A W AM+    MH   D  + +   +I  E   P     +  + A   AG
Sbjct: 370 RGLSSEELVPAVWTAMLGACKMHKNFDLGVEVAENLISAEPENPGHYVLLSNMYAL--AG 427

Query: 451 LLDIGRQYFNAMIQ 464
            +D      N MIQ
Sbjct: 428 RMDRVESVRNVMIQ 441


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 243/604 (40%), Positives = 352/604 (58%), Gaps = 36/604 (5%)

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           LK C K  A    K+IHA ++K GL     +  +L++ Y +   L+ A  +F++   RD 
Sbjct: 9   LKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDH 68

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           VS+ +++T Y      +    +F  M    +   P+     T+L ACA + SL LG  V 
Sbjct: 69  VSWASILTAYNQAKLPNKTLSIFHYM-FTTDRLQPDHFVYATLLKACASLCSLRLGKQVH 127

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
           +         +  V ++L+DMY+KCG    AR +F+SI  +  +SW  M+ GY  +    
Sbjct: 128 ARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKD 187

Query: 317 EALMLFR-------------------------------QMLQSNIEPNDVTFLS-VLPAC 344
           EA+ LF                                +M +  ++  D   LS V+ AC
Sbjct: 188 EAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGAC 247

Query: 345 AYLGALDLGKWIHAY-IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
           A L  L LGK IH   I   ++    +S   +L+DMYAKC +I AA  VF+ M ++ + S
Sbjct: 248 ANLAVLGLGKQIHGLVIGSGYESCLFIS--NALVDMYAKCSDILAARNVFNRMLHRDVVS 305

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
           W ++I G A HG+A +AL L+ +M+   ++P+++TFVG++ AC+HAGL+  GR+ F AMI
Sbjct: 306 WTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMI 365

Query: 464 QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELG 523
           +DY+ISP LQ + C +DLL R+G  +EAE L+KTM  KPD   W +LL AC+ HG  E+G
Sbjct: 366 EDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMG 425

Query: 524 ESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSV 583
             +A  LL L    P  YVLLSN+YAGAG+W+ ++ +R  + D  +K+ PG SSI++G  
Sbjct: 426 VRIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDLGKE 485

Query: 584 VHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKL 643
              F  G+  HP    I+ +L E+DA + K G++PDTS VL+DM+E+ KE  L  HSE+ 
Sbjct: 486 SQVFHAGETCHPMKDEIFGLLKELDAEMRKRGYIPDTSYVLHDMEEQEKERELFWHSERW 545

Query: 644 AIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSC 703
           A+AYGL+   PGT IRIVKNLR+CG+CH+  KL S I ++EII RD  R+HHFKDG CSC
Sbjct: 546 AVAYGLLKAVPGTVIRIVKNLRICGDCHTFLKLTSSIVHKEIIVRDATRYHHFKDGRCSC 605

Query: 704 NDYW 707
           ND+W
Sbjct: 606 NDFW 609



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 122/427 (28%), Positives = 227/427 (53%), Gaps = 37/427 (8%)

Query: 37  LSKCTNMQ---NIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L  CT  Q   N K++H+QI+K+GL+  Q   + L++  A      L  A  +F+ + + 
Sbjct: 9   LKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLD--AYGKCNLLQDAHYLFDEMPQR 66

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQI 152
           + V W +I+  ++ +  P   +  +  M  +  + P+ + +  +LK+CA + ++  GKQ+
Sbjct: 67  DHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQV 126

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           HA  +      D  V +SL++MYA+ G    AR VF+   ++ +VS+TA+++GYA  G  
Sbjct: 127 HARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLK 186

Query: 213 DDARQLFDEMPIR------------------------------EENFVPNESTVVTVLSA 242
           D+A +LF   P+R                              E   + +   + +V+ A
Sbjct: 187 DEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGA 246

Query: 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
           CA++  L LG  +  L+ G G  S L ++NAL+DMY+KC D++ AR++F  +  RDV+SW
Sbjct: 247 CANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSW 306

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
             +I G       KEAL L+ QM+ + I+PN+VTF+ ++ AC++ G +  G+ +   + +
Sbjct: 307 TSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIE 366

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKAL 421
           +++   ++ L+T  +D+ ++ G++  AE +   M +K    +W A++S    HG  +  +
Sbjct: 367 DYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGV 426

Query: 422 SLFSRMI 428
            +  R++
Sbjct: 427 RIADRLL 433


>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Brachypodium distachyon]
          Length = 868

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 258/672 (38%), Positives = 389/672 (57%), Gaps = 10/672 (1%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +L  C  + ++   ++VH+ +++ GL      L+ L+ + A    GD+  A  VF+ +  
Sbjct: 201 VLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKC--GDVEAARKVFDGMSL 258

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + + WN +I GH  +      ++ ++ M+     PN  T   +  +   +S +   K+I
Sbjct: 259 TDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEI 318

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           HA  +K G  +D     SLI MY+  G +  A  VF++   RDA+S+TA+I+GY   G+ 
Sbjct: 319 HALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFP 378

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           D A +++  M +   N  P++ TV + L+ACA +G L++G  +  L    G    + V N
Sbjct: 379 DKALEVYALMEV--NNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVVAN 436

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           AL++MY+K   + KA ++F+ +  +DVISW+ MI G+       EAL  FR ML ++++P
Sbjct: 437 ALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHML-ADVKP 495

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N VTF++ L ACA  G+L  GK IHA++ +         +  +L+D+Y KCG    A   
Sbjct: 496 NSVTFIAALAACAATGSLRCGKEIHAHVLRQGIASEGY-VPNALLDLYVKCGQTGYAWAQ 554

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F   G K + SWN M++G   HG  D ALS F+ M+  G  PD++TFV +L  C+ AG++
Sbjct: 555 FGAHGTKDVVSWNIMLAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSRAGMV 614

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
             G + F++M + Y I P L+HY CMVDLL R G   E    +  M + PDAA+W +LL 
Sbjct: 615 SQGWELFHSMTEKYSIVPNLKHYACMVDLLSRVGRLTEGYNFINRMPITPDAAVWGALLN 674

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
            CR+H  +ELGE  AK +LELEP + G +VLLS++YA AG W +V+ +R  +  KG++  
Sbjct: 675 GCRIHRNIELGELAAKIVLELEPNDAGYHVLLSDLYADAGMWAEVSKVRKTMRVKGLEHD 734

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
            GCS +EV   +H FL  D+ HPQ K I ++LD I   ++ SGF P  S  L D  E  K
Sbjct: 735 YGCSWVEVKGAIHAFLTDDESHPQIKEINDVLDGIYERMKASGFAPVESYSLED-KEVSK 793

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
           +  L  HSE+LA+A+GLI+T PGT+I + KN   C +CH   ++ISKI  REI  RD   
Sbjct: 794 DDVLCGHSERLAVAFGLINTTPGTSICVTKNQYTCESCHGILRMISKIVRREITVRDTKE 853

Query: 693 FHHFKDGNCSCN 704
           FHHF+DG+CSC 
Sbjct: 854 FHHFRDGSCSCG 865



 Score =  208 bits (530), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 143/456 (31%), Positives = 239/456 (52%), Gaps = 6/456 (1%)

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
           FG+  +A  VF  + E +   WN ++ G+  +     A+  Y RM+ +G  P+ YTFP +
Sbjct: 142 FGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGARPDVYTFPCV 201

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L+SC  +  ++ G+++HAHVL+ GL  +  V  +L+ MYA+ G++E+AR VF+  SL D 
Sbjct: 202 LRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDC 261

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           +S+ A+I G+      +   +LF  M   E+   PN  T+ +V  A   +  L+    + 
Sbjct: 262 ISWNAMIAGHFENHECEAGLELFLHM--LEDEVEPNLMTITSVTVASGLLSDLDFAKEIH 319

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
           +L    G  +++   N+LI MYS  G + +A  +F  +E RD +SW  MI GY       
Sbjct: 320 ALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPD 379

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           +AL ++  M  +N+ P+DVT  S L ACA LG LD+G  +H  +  +   +  + +  +L
Sbjct: 380 KALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHE-LATSKGFIRYIVVANAL 438

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           ++MYAK   I+ A +VF  M  K + SW++MI+G   + K  +AL  F  M+ + ++P+ 
Sbjct: 439 VEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHMLAD-VKPNS 497

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
           +TF+  L+AC   G L  G++  +A +    I+ +      ++DL  + G    A A   
Sbjct: 498 VTFIAALAACAATGSLRCGKE-IHAHVLRQGIASEGYVPNALLDLYVKCGQTGYAWAQFG 556

Query: 497 TMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
               K D   W  +L     HG  ++  S    +LE
Sbjct: 557 AHGTK-DVVSWNIMLAGFVAHGHGDIALSFFNEMLE 591



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/357 (33%), Positives = 177/357 (49%), Gaps = 14/357 (3%)

Query: 170 SLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENF 229
           ++++M  + GE   A  VF K   RD  S+  ++ GY   G+L++A  L+  M       
Sbjct: 134 AMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGAR- 192

Query: 230 VPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARD 289
            P+  T   VL +C  +  L +G  V + +   GLG  + V NAL+ MY+KCGD+  AR 
Sbjct: 193 -PDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARK 251

Query: 290 LFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA 349
           +F+ +   D ISWN MI G+    + +  L LF  ML+  +EPN +T  SV  A   L  
Sbjct: 252 VFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSD 311

Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
           LD  K IHA   K      +V+   SLI MY+  G +  A  VF  M  +   SW AMIS
Sbjct: 312 LDFAKEIHALAVKR-GFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMIS 370

Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS 469
           G   +G  DKAL +++ M    + PDD+T    L+AC   G LD+G +     + +   S
Sbjct: 371 GYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIK-----LHELATS 425

Query: 470 PKLQHY----GCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL-GACRVHGRLE 521
                Y      +V++  ++ + ++A  + K M  K D   W+S++ G C  H   E
Sbjct: 426 KGFIRYIVVANALVEMYAKSKIIEKAIEVFKYMPDK-DVISWSSMIAGFCFNHKNFE 481



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 143/288 (49%), Gaps = 3/288 (1%)

Query: 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDL 290
           P+E   V +   C    + E G   C   +       L + NA++ M  + G+   A  +
Sbjct: 92  PDEDAYVALFHLCEWRRAAEHGLRACGHADAAHGTFGLRLGNAMLSMLVRFGETWHAWKV 151

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350
           F  + +RDV SWNVM+GGY      +EAL L+ +ML +   P+  TF  VL +C  +  L
Sbjct: 152 FAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGARPDVYTFPCVLRSCGGVPDL 211

Query: 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISG 410
            +G+ +HA++ +    +  V +  +L+ MYAKCG+++AA +VFDGM      SWNAMI+G
Sbjct: 212 TMGREVHAHVLRFGLGV-EVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAG 270

Query: 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470
              + + +  L LF  M+ + ++P+ +T   V  A      LD  ++  +A+      + 
Sbjct: 271 HFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKE-IHALAVKRGFAT 329

Query: 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
            +     ++ +    G   EA  +   ME + DA  WT+++     +G
Sbjct: 330 DVAFCNSLIQMYSSLGRMGEACTVFSRMETR-DAMSWTAMISGYEKNG 376


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 213/438 (48%), Positives = 303/438 (69%), Gaps = 1/438 (0%)

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           V NAL+DMY+K G    A D+FE +  +DVISW  ++ G  H   Y+EAL LF +M    
Sbjct: 4   VNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMG 63

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           I P+ +   +VL ACA L  L+ GK +HA   K+    +++S+  SL+ MYAKCG I+ A
Sbjct: 64  IHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLG-SSLSVDNSLVSMYAKCGCIEDA 122

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
            +VFD M  + + +W A+I G A +G+  ++L+ ++ MI  G++PD ITF+G+L AC+HA
Sbjct: 123 NKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHA 182

Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
           GL++ GR YF +M + Y I P  +HY CM+DLLGR+G   EA+ LL  M ++PDA +W +
Sbjct: 183 GLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKA 242

Query: 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
           LL ACRVHG +ELGE  A +L ELEP+N   YVLLSN+Y+ AG+W++ A  R  +  +G+
Sbjct: 243 LLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGV 302

Query: 570 KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE 629
            K PGCS IE+ S VH F+  D+ HP++  IY  +DEI  L++++G+VPD +  L+DMDE
Sbjct: 303 SKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDE 362

Query: 630 EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
           E KE  L++HSEKLA+A+GL++  PG  IRI KNLR+CG+CH+A K +S +F+R +I RD
Sbjct: 363 EGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRD 422

Query: 690 RNRFHHFKDGNCSCNDYW 707
            N FHHF++G CSC+DYW
Sbjct: 423 SNCFHHFREGACSCSDYW 440



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 176/337 (52%), Gaps = 40/337 (11%)

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
            V+ +L++MYA+ G  + A  VF K + +D +S+T+L+TG    G  ++A +LF EM I 
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
                P++  +  VLSACA +  LE G  V +     GLGS+L V N+L+ MY+KCG + 
Sbjct: 63  --GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIE 120

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
            A  +F+S+E +DVI+W  +I GY      +E+L  +  M+ S ++P+ +TF+ +L AC+
Sbjct: 121 DANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACS 180

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
           + G ++ G+                S + S+ ++Y     IK   +            + 
Sbjct: 181 HAGLVEHGR----------------SYFQSMEEVYG----IKPGPE-----------HYA 209

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
            MI  L   GK  +A  L ++M    +QPD   +  +L+AC   G +++G +  N +   
Sbjct: 210 CMIDLLGRSGKLMEAKELLNQM---AVQPDATVWKALLAACRVHGNVELGERAANNL--- 263

Query: 466 YKISPK-LQHYGCMVDLLGRAGLFDEAEALLKTMEMK 501
           +++ PK    Y  + +L   AG ++EA    + M+++
Sbjct: 264 FELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLR 300



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 148/297 (49%), Gaps = 12/297 (4%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G   YA  VFE + + + + W +++ G   + S   A++ +  M + G  P+      +L
Sbjct: 16  GYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVL 75

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
            +CA+++ +  GKQ+HA+ LK GL S   V  SL++MYA+ G +E A  VF+   ++D +
Sbjct: 76  SACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVI 135

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVC 256
           ++TALI GYA  G   ++   +++M        P+  T + +L AC+H G +E G ++  
Sbjct: 136 TWTALIVGYAQNGRGRESLNFYNBMI--ASGVKPDFITFIGLLFACSHAGLVEHGRSYFQ 193

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDY 315
           S+ E +G+         +ID+  + G L++A++L   +  + D   W  ++       + 
Sbjct: 194 SMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNV 253

Query: 316 KEALMLFRQMLQSNIEP-NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
           +        + +  +EP N V +  VL +  Y  A   GKW  A   +   KL  VS
Sbjct: 254 ELGERAANNLFE--LEPKNAVPY--VLLSNLYSAA---GKWEEAAKTRRLMKLRGVS 303



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 104/206 (50%), Gaps = 14/206 (6%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           A+LS C  +  +   KQVH+  +K+GL ++    + L+ + A    G +  A  VF+++ 
Sbjct: 73  AVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYA--KCGCIEDANKVFDSME 130

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             + + W  +I G++ +     ++ FY  MI SG  P+  TF  +L +C+    +  G+ 
Sbjct: 131 IQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRS 190

Query: 152 IHAHVLKL-GLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-DAVSYTALITGYASR 209
               + ++ G++  P  +  +I++  ++G+L  A+ + N+ +++ DA  + AL+      
Sbjct: 191 YFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVH 250

Query: 210 GYLD----DARQLFDEMPIREENFVP 231
           G ++     A  LF+  P   +N VP
Sbjct: 251 GNVELGERAANNLFELEP---KNAVP 273


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 247/682 (36%), Positives = 384/682 (56%), Gaps = 10/682 (1%)

Query: 30   NQPSLALLSKCTNMQNIKQ----VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALL 85
            ++ +L+ L KC    +  +     H  ++K G        + LI   A S   D   A+L
Sbjct: 409  DEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMID--NAVL 466

Query: 86   VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145
            VF+ +   + + WN++I G + +     AI+ +VRM + G   ++ T   +L +CA+   
Sbjct: 467  VFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHY 526

Query: 146  ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
               G+ +H + +K GL  +  +  +L++MY+   +  S   +F   + ++ VS+TA+IT 
Sbjct: 527  WFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITS 586

Query: 206  YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
            Y   G  D    L  EM +  +   P+   V +VL   A   SL+ G  V      +G+ 
Sbjct: 587  YTRAGLFDKVAGLLQEMVL--DGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGME 644

Query: 266  SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
              L V NAL++MY  C ++ +AR +F+ +  +D+ISWN +IGGY+  +   E+  LF  M
Sbjct: 645  KLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDM 704

Query: 326  LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
            L    +PN VT   +LPA A + +L+ G+ IHAY  +    L +     +L+DMY KCG 
Sbjct: 705  LL-QFKPNTVTMTCILPAVASISSLERGREIHAYALRR-GFLEDSYTSNALVDMYVKCGA 762

Query: 386  IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
            +  A  +FD +  K L SW  MI+G  MHG    A++LF +M G G++PD  +F  +L A
Sbjct: 763  LLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYA 822

Query: 446  CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
            C H+GL   G ++FNAM ++YKI PKL+HY C+VDLL   G   EA   +++M ++PD++
Sbjct: 823  CCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSS 882

Query: 506  IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
            IW SLL  CR+H  ++L E VA  + +LEPEN G YVLL+N+YA A RW+ V  ++ ++ 
Sbjct: 883  IWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIG 942

Query: 566  DKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLY 625
             +G+++  GCS IEV   VH F+  ++ HP+   I E LD +   + + G  P     L 
Sbjct: 943  GRGLRENTGCSWIEVRGKVHVFIADNRNHPEWNRIAEFLDHVARRMREEGHDPKKKYSLM 1002

Query: 626  DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREI 685
              ++   + AL  HS KLA+ +G++    G  IR+ KN +VC +CH A K ISK+ NREI
Sbjct: 1003 GANDAVHDEALCGHSSKLAVTFGVLHLPEGRPIRVTKNSKVCSHCHEAAKFISKMCNREI 1062

Query: 686  IARDRNRFHHFKDGNCSCNDYW 707
            I RD +RFHHF+ G CSC  ++
Sbjct: 1063 ILRDSSRFHHFEGGRCSCRGHF 1084



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 149/499 (29%), Positives = 234/499 (46%), Gaps = 58/499 (11%)

Query: 78  GDLSYALLVFETI--REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPF 135
           GDL  A +VF+ +  R  +  +W +++  ++ +      +  + +M   G  P+ +    
Sbjct: 144 GDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSC 203

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           +LK  A + +I+EG+ IH  + KLGL     V  +LI +Y++ G +E A  VF+    RD
Sbjct: 204 VLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARD 263

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
           A+S+ + I+GY S G+ D A  LF +M    E    +  TV++VL ACA +G   +G  V
Sbjct: 264 AISWNSTISGYFSNGWHDRAVDLFSKM--WSEGTEISSVTVLSVLPACAELGFELVGKVV 321

Query: 256 CSLIEGHGLGSNLHVTNALID---------MYSKCGDLVKARDLFESI-EKRDVISWNVM 305
                  GL  +L    + ID         MY KCGD+  AR +F+++  K +V  WN++
Sbjct: 322 HGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLI 381

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365
           +GGY   ++++E+L+LF QM +  I P++     +L     L     G   H Y+ K   
Sbjct: 382 MGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGF 441

Query: 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
                ++  +LI  YAK   I  A  VFD M ++   SWN++ISG   +G   +A+ LF 
Sbjct: 442 G-TQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFV 500

Query: 426 RMIGEGLQPDDITFVGVLSACNHAGLLDIGR----------------------------- 456
           RM  +G + D  T + VL AC  +    +GR                             
Sbjct: 501 RMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCS 560

Query: 457 ------QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEM---KPDAAIW 507
                 Q F  M Q   +S     +  M+    RAGLFD+   LL+ M +   KPD    
Sbjct: 561 DWHSTNQIFRNMAQKNVVS-----WTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAV 615

Query: 508 TSLLGACRVHGRLELGESV 526
           TS+L        L+ G+SV
Sbjct: 616 TSVLHGFAGDESLKQGKSV 634



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 122/410 (29%), Positives = 193/410 (47%), Gaps = 25/410 (6%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           +H  + K GL       + LI +   S  G +  A+ VF+++   + + WN+ I G+  +
Sbjct: 220 IHGLLEKLGLGEACAVANALIAL--YSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSN 277

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG----LES- 163
                A+  + +M   G   ++ T   +L +CA++     GK +H + +K G    LES 
Sbjct: 278 GWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESV 337

Query: 164 ----DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT-GYASRGYLDDARQL 218
               D  + + L+ MY + G++ SAR VF+    +  V    LI  GYA     +++  L
Sbjct: 338 QSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLL 397

Query: 219 FDEMPIREENFVPNESTVVTVLS-----ACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           F++M   E    P+E  +  +L      +CA  G +  G  V       G G+   V NA
Sbjct: 398 FEQM--HELGITPDEHALSCLLKCITCLSCARDGLVAHGYLV-----KLGFGTQCAVCNA 450

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           LI  Y+K   +  A  +F+ +  +D ISWN +I G T      EA+ LF +M     E +
Sbjct: 451 LISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELD 510

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
             T LSVLPACA      +G+ +H Y  K    +   SL  +L+DMY+ C +  +  Q+F
Sbjct: 511 STTLLSVLPACARSHYWFVGRVVHGYSVKT-GLIGETSLANALLDMYSNCSDWHSTNQIF 569

Query: 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
             M  K + SW AMI+     G  DK   L   M+ +G++PD      VL
Sbjct: 570 RNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVL 619



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 159/559 (28%), Positives = 245/559 (43%), Gaps = 86/559 (15%)

Query: 132 TFPFILKSCAKISAISEGKQIHAHVLK-LGLESDPFVHTSLINMYAQNGELESARLVFNK 190
           ++  +++ C +  ++   ++ HA V    G      +   L+  Y + G+L  AR+VF++
Sbjct: 96  SYCAVVQLCGEERSLEAARRAHALVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDE 155

Query: 191 SSLR--DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS 248
              R  D   +T+L++ YA  G   +   LF +M        P+   V  VL   A +GS
Sbjct: 156 MPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCC--GVSPDAHAVSCVLKCIASLGS 213

Query: 249 LELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGG 308
           +  G  +  L+E  GLG    V NALI +YS+CG +  A  +F+S+  RD ISWN  I G
Sbjct: 214 ITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISG 273

Query: 309 YTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH---- 364
           Y     +  A+ LF +M     E + VT LSVLPACA LG   +GK +H Y  K+     
Sbjct: 274 YFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWD 333

Query: 365 ----QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADK 419
               Q   + +L + L+ MY KCG++ +A +VFD M  K  +  WN ++ G A   + ++
Sbjct: 334 LESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEE 393

Query: 420 ALSLFSRMIGEGLQPDDITFVGVLS-----ACNHAGL--------LDIGRQ--YFNAMIQ 464
           +L LF +M   G+ PD+     +L      +C   GL        L  G Q    NA+I 
Sbjct: 394 SLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALIS 453

Query: 465 DYKISPKLQHYGCMVDLLGRA---------------GLFDEAEALLKTMEMKP---DAAI 506
            Y  S  + +   + D +                  GL  EA  L   M M+    D+  
Sbjct: 454 FYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTT 513

Query: 507 WTSLLGAC-RVH----GRLELGESVAKHLL---------------------------ELE 534
             S+L AC R H    GR+  G SV   L+                            + 
Sbjct: 514 LLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMA 573

Query: 535 PENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVH 594
            +N  ++  +   Y  AG +D VA +   +   G+K         V SV+H F  GD+  
Sbjct: 574 QKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKP----DVFAVTSVLHGF-AGDESL 628

Query: 595 PQSK--HIYEMLDEIDALL 611
            Q K  H Y + + ++ LL
Sbjct: 629 KQGKSVHGYAIRNGMEKLL 647


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 254/689 (36%), Positives = 378/689 (54%), Gaps = 61/689 (8%)

Query: 71  ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNT 130
           +   S  G L  A  +F  I  P+   +N ++   ++SSS   A   +  M     V ++
Sbjct: 76  LAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMP----VRDS 131

Query: 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK 190
            T+  ++ S A    +S  +    H   L  E D      ++  Y +NG +E AR +FN 
Sbjct: 132 VTYNVMISSHANHGLVSLAR----HYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNS 187

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE------------------------ 226
            +  DA+S+ AL++GY   G + +AR+LFD MP R+                        
Sbjct: 188 RTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF 247

Query: 227 -ENFVPNESTVVTVLSACAHMGSLELGNWVC-SLIEGHGLGSNLHVT------------- 271
               V +  T   V+S  A  G LE    V  ++ E + +  N  V              
Sbjct: 248 DAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKE 307

Query: 272 -------------NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
                        N ++  Y++ G L +A+ +F+++ ++D +SW  M+  Y+     +E 
Sbjct: 308 LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEET 367

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
           L LF +M +     N   F  VL  CA + AL+ G  +H  + +    +    +  +L+ 
Sbjct: 368 LQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVG-CFVGNALLA 426

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
           MY KCGN++ A   F+ M  + + SWN MI+G A HG   +AL +F  M     +PDDIT
Sbjct: 427 MYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDIT 486

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
            VGVL+AC+H+GL++ G  YF +M  D+ ++ K +HY CM+DLLGRAG   EA  L+K M
Sbjct: 487 LVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDM 546

Query: 499 EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVA 558
             +PD+ +W +LLGA R+H   ELG S A+ + ELEPEN G YVLLSN+YA +G+W D  
Sbjct: 547 PFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDAR 606

Query: 559 TIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVP 618
            +R  + ++G+KKVPG S IEV + VH F  GD VHP+ + IY  L+++D  ++K+G+V 
Sbjct: 607 KMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVS 666

Query: 619 DTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLIS 678
            T  VL+D++EE KE  L +HSEKLA+AYG+++  PG  IR++KNLRVCG+CH+A K IS
Sbjct: 667 ATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYIS 726

Query: 679 KIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            I  R I+ RD NRFHHF+ G+CSC DYW
Sbjct: 727 AIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 184/449 (40%), Gaps = 85/449 (18%)

Query: 134 PFILKSCAKISA-ISEGKQIHAHVLKLGL-ESDPFVHTSLINMYAQNGELESARLVFNKS 191
           P +++S   I+A +  G+   A  L   +       + +++  Y+ NG L  A  +F   
Sbjct: 36  PEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAI 95

Query: 192 SLRDAVSYTALITGYASRGYLDDARQLFDEMPIREE-----------------------N 228
              D  SY  L+   A    L DAR LFDEMP+R+                        +
Sbjct: 96  PRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFD 155

Query: 229 FVPNESTVV--TVLSACAHMGSLELGNWVCSLIEGHGLGSNLH-----VTNALIDMYSKC 281
             P +  V    +L+A    G +E         E  GL ++         NAL+  Y + 
Sbjct: 156 LAPEKDAVSWNGMLAAYVRNGRVE---------EARGLFNSRTEWDAISWNALMSGYVQW 206

Query: 282 GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
           G + +AR+LF+ +  RDV+SWN+M+ GY    D  EA  LF      ++     T+ +V+
Sbjct: 207 GKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVV 262

Query: 342 PACAYLGALDLGK-------------W---IHAYIDK----------NHQKLNNVSLWTS 375
              A  G L+  +             W   + AYI +          N     NV+ W +
Sbjct: 263 SGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNT 322

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           ++  YA+ G ++ A+ VFD M  K   SW AM++  +  G +++ L LF  M   G   +
Sbjct: 323 MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVN 382

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQ-DYKISPKLQHYGCMVD-----LLGRAGLFD 489
              F  VLS C     L+ G Q    +I+  Y +       GC V      +  + G  +
Sbjct: 383 RSAFACVLSTCADIAALECGMQLHGRLIRAGYGV-------GCFVGNALLAMYFKCGNME 435

Query: 490 EAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           +A    + ME + D   W +++     HG
Sbjct: 436 DARNAFEEMEER-DVVSWNTMIAGYARHG 463



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 118/282 (41%), Gaps = 42/282 (14%)

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           NA++  YS  G L  A  LF +I + D  S+N ++     +S   +A  LF +M   +  
Sbjct: 73  NAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRD-- 130

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
              VT+  ++ + A  G + L +    Y D   +K  +   W  ++  Y + G ++ A  
Sbjct: 131 --SVTYNVMISSHANHGLVSLAR---HYFDLAPEK--DAVSWNGMLAAYVRNGRVEEARG 183

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP----------------- 434
           +F+        SWNA++SG    GK  +A  LF RM G  +                   
Sbjct: 184 LFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEA 243

Query: 435 ----------DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484
                     D  T+  V+S     G+L+  R+ F+AM +   +S     +  MV    +
Sbjct: 244 RRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVS-----WNAMVAAYIQ 298

Query: 485 AGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
             + DEA+ L   M  + + A W ++L      G LE  ++V
Sbjct: 299 RRMMDEAKELFNMMPCR-NVASWNTMLTGYAQAGMLEEAKAV 339



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 10/145 (6%)

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           I  + + G +  AE++F  M  ++ +++NAM++G + +G+   A SLF  +     +PD+
Sbjct: 45  ITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP----RPDN 100

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
            ++  +L A   +  L   R  F+ M     ++     Y  M+      GL   A     
Sbjct: 101 YSYNTLLHALAVSSSLADARGLFDEMPVRDSVT-----YNVMISSHANHGLVSLARHYFD 155

Query: 497 TMEMKPDAAIWTSLLGACRVHGRLE 521
               K DA  W  +L A   +GR+E
Sbjct: 156 LAPEK-DAVSWNGMLAAYVRNGRVE 179


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 248/691 (35%), Positives = 388/691 (56%), Gaps = 56/691 (8%)

Query: 23  PPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSY 82
           P    L NQ  L L +K   +++ + +  +++K       F+ + L+   A S  G +  
Sbjct: 55  PTDSFLHNQL-LHLYAKFGKLRDAQNLFDKMLK----RDXFSWNALLSAYAKS--GSIQN 107

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
               F+ +   + V +N  I G S +S P  +++ + RM   GF P  YT   IL + A+
Sbjct: 108 LKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQ 167

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
           +  +  GKQIH  ++      + F+  +L +MYA+ GE+E AR +F+  + ++ VS+  +
Sbjct: 168 LLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLM 227

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
           I+GYA  G  +    L  +M  R    +P++ T+ T+++A                    
Sbjct: 228 ISGYAKNGQPEKCIGLLHQM--RLSGHMPDQVTMSTIIAA-------------------- 265

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
                          Y +CG + +AR +F   +++D++ W  M+ GY      ++AL+LF
Sbjct: 266 ---------------YCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLF 310

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH-----AYIDKNHQKLNNVSLWTSLI 377
            +ML  +IEP+  T  SV+ +CA L +L  G+ +H     A ++      NN+ + ++LI
Sbjct: 311 NEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLN------NNLLVSSALI 364

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI 437
           DMY+KCG I  A  VF+ M  + + SWNAMI G A +G    AL LF  M+ +  +PD++
Sbjct: 365 DMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNV 424

Query: 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT 497
           TF+G+LSAC H   ++ G++YF+++   + ++P L HY CMV+LLGR G  ++A AL+K 
Sbjct: 425 TFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKN 484

Query: 498 MEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557
           M   PD  IW++LL  C   G +   E  A+HL EL+P     Y++LSNMYA  GRW DV
Sbjct: 485 MAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDV 544

Query: 558 ATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFV 617
           A++R  +  K +KK  G S IE+ + VH F   D+ HP+S+ IYE L+ +   L++ GF 
Sbjct: 545 ASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFT 604

Query: 618 PDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTT-IRIVKNLRVCGNCHSATKL 676
           P+T+ VL+D+ E+ K  ++  HSEKLA+A+GLI    G + IRI+KN+R+C +CH   K 
Sbjct: 605 PNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKF 664

Query: 677 ISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            S+I  R+II RD NRFHHF  G CSCND W
Sbjct: 665 ASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/268 (20%), Positives = 109/268 (40%), Gaps = 40/268 (14%)

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
           +  ++  C     ++  K + ++++ +  +  +  L   L+ +YAK G ++ A+ +FD M
Sbjct: 25  YTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKM 84

Query: 397 GYKTLASWNAMISGLAMHGK-------------------------------ADKALSLFS 425
             +   SWNA++S  A  G                                  ++L LF 
Sbjct: 85  LKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFK 144

Query: 426 RMIGEGLQPDDITFVGVLSACNHAGLLDI--GRQYFNAMIQDYKISPKLQHYGCMVDLLG 483
           RM  EG +P + T V +L+A   A LLD+  G+Q   ++I    +      +  + D+  
Sbjct: 145 RMQREGFEPTEYTIVSILNA--SAQLLDLRYGKQIHGSIIVRNFLGNVFI-WNALTDMYA 201

Query: 484 RAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVL 543
           + G  ++A  L   +  K +   W  ++     +G+ E    +  H + L    P    +
Sbjct: 202 KCGEIEQARWLFDCL-TKKNLVSWNLMISGYAKNGQPEKCIGLL-HQMRLSGHMPDQVTM 259

Query: 544 LSNM--YAGAGRWDDVATIRTRLNDKGM 569
            + +  Y   GR D+   + +   +K +
Sbjct: 260 STIIAAYCQCGRVDEARRVFSEFKEKDI 287


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 241/626 (38%), Positives = 366/626 (58%), Gaps = 37/626 (5%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           +++L  C      KQ+HSQ I  G+        KL         G +SYA  +F  I EP
Sbjct: 38  ISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEP 97

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS-AISEGKQI 152
           + V+WNN+I+G S        ++ Y+ M+  G  P+++TFPF+L    +   A++ GK++
Sbjct: 98  DVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKL 157

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H HV+K GL S+ +V  +L+ MY+  G ++ AR VF++    D  S+  +I+GY      
Sbjct: 158 HCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEY 217

Query: 213 DDARQLFDEMPIREENFV-PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
           +++ +L  EM   E N V P   T++ VLSAC+ +   +L   V   +       +L + 
Sbjct: 218 EESIELLVEM---ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLE 274

Query: 272 NALIDMYSKCGDL---------VKARDL----------------------FESIEKRDVI 300
           NAL++ Y+ CG++         +KARD+                      F+ +  RD I
Sbjct: 275 NALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRI 334

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           SW +MI GY     + E+L +FR+M  + + P++ T +SVL ACA+LG+L++G+WI  YI
Sbjct: 335 SWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYI 394

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
           DKN  K N+V +  +LIDMY KCG  + A++VF  M  +   +W AM+ GLA +G+  +A
Sbjct: 395 DKNKIK-NDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEA 453

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
           + +F +M    +QPDDIT++GVLSACNH+G++D  R++F  M  D++I P L HYGCMVD
Sbjct: 454 IKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVD 513

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540
           +LGRAGL  EA  +L+ M M P++ +W +LLGA R+H    + E  AK +LELEP+N   
Sbjct: 514 MLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAV 573

Query: 541 YVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHI 600
           Y LL N+YAG  RW D+  +R ++ D  +KK PG S IEV    HEF+ GDK H QS+ I
Sbjct: 574 YALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEI 633

Query: 601 YEMLDEIDALLEKSGFVPDTSEVLYD 626
           Y  L+E+      + ++PDTSE+L++
Sbjct: 634 YMKLEELAQESTFAAYLPDTSELLFE 659


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 248/660 (37%), Positives = 381/660 (57%), Gaps = 46/660 (6%)

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKS 139
           + +AL +F+++ E + V WN +I   S S     A+   V M   G  P++ T+   L +
Sbjct: 241 VDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTA 300

Query: 140 CAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSY 199
           CA++S++  GKQ+H  V++     DP+V ++++ +YA+ G  + A+ VF+    R++VS+
Sbjct: 301 CARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSW 360

Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
           T LI G+   G   ++ +LF++M  R E    ++  + T++S C +   + LG+ + SL 
Sbjct: 361 TVLIGGFLQYGCFSESVELFNQM--RAELMAVDQFALATLISGCCNTMDICLGSQLHSLC 418

Query: 260 EGHGLGSNLHVTNALIDMYSKCGDL-------------------------------VKAR 288
              G    + V+N+LI MY+KCG+L                                KAR
Sbjct: 419 LKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAR 478

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVLPACAYL 347
           + F+ +  R+VI+WN M+G Y      ++ L ++  ML + ++ P+ VT++++   CA +
Sbjct: 479 EFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADI 538

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
           GA  LG  I  +  K    L+  S+  ++I MY+KCG I  A + FD +  K L SWNAM
Sbjct: 539 GANKLGDQIIGHTVKVGLILDT-SVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAM 597

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           I+G + HG   +A+ +F  ++ +G +PD I++V VLS C+H+GL++ G+ YF+ M +D+ 
Sbjct: 598 ITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHN 657

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
           ISP L+H+ CMVDLLGRAG   EA+ L+  M MKP A +W +LL AC+ HG  +L E  A
Sbjct: 658 ISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAA 717

Query: 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF 587
           KHL +L+    G Y+LL+ MYA AG+ DD A +R  + DKG+KK PG S +EV + VH F
Sbjct: 718 KHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWMEVNNRVHVF 777

Query: 588 LVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAY 647
              D  HPQ   I E LDE+   +   G+V   S             +  HHSEKLA+A+
Sbjct: 778 KAEDVSHPQVIAIREKLDELMEKIAHLGYVRTES-----------PRSEIHHSEKLAVAF 826

Query: 648 GLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           G++S      I I+KNLR+C +CH+  KLIS + +RE + RD  RFHHFK G+CSC DYW
Sbjct: 827 GIMSLPAWMPIHIMKNLRICDDCHTVIKLISTVTDREFVIRDGVRFHHFKGGSCSCMDYW 886



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/419 (27%), Positives = 210/419 (50%), Gaps = 33/419 (7%)

Query: 33  SLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           SL   ++ ++++  KQ+H Q+I+   H   +  S ++E+ A    G    A  VF ++R+
Sbjct: 297 SLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYA--KCGCFKEAKRVFSSLRD 354

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            N V W  +I G         +++ + +M       + +    ++  C     I  G Q+
Sbjct: 355 RNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQL 414

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H+  LK G      V  SLI+MYA+ G L++A L+FN  + RD VS+T +IT Y+  G +
Sbjct: 415 HSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNI 474

Query: 213 DDARQLFDEMPIR------------------------------EENFVPNESTVVTVLSA 242
             AR+ FD+M  R                              E++ +P+  T VT+   
Sbjct: 475 AKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRG 534

Query: 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
           CA +G+ +LG+ +       GL  +  V NA+I MYSKCG + +AR  F+ + ++D++SW
Sbjct: 535 CADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSW 594

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
           N MI GY+     K+A+ +F  +L    +P+ +++++VL  C++ G ++ GK+    + +
Sbjct: 595 NAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKR 654

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHGKADKA 420
           +H     +  ++ ++D+  + G++  A+ + D M  K  A  W A++S    HG  D A
Sbjct: 655 DHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLA 713



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 121/507 (23%), Positives = 221/507 (43%), Gaps = 67/507 (13%)

Query: 75  SPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG-FVPNTYTF 133
           +  G LS A+ +F  +   +   WN I+ G+  S   + A+  +V M  +G  +PN +TF
Sbjct: 103 AKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTF 162

Query: 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL 193
             ++KSC  +       Q+   + K   + DP V T+L++M  + G ++ A   F++   
Sbjct: 163 GCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKN 222

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIRE--------------------------- 226
              +   +++ GYA    +D A ++F  MP R+                           
Sbjct: 223 PTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDM 282

Query: 227 --ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
             +   P+ +T  + L+ACA + SLE G  +   +  +    + +V +A++++Y+KCG  
Sbjct: 283 HGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCF 342

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
            +A+ +F S+  R+ +SW V+IGG+     + E++ LF QM    +  +     +++  C
Sbjct: 343 KEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGC 402

Query: 345 AYLGALDLGKWIHAYIDKN-HQKLNNVSLWTSLIDMYAKCGNIKAAE------------- 390
                + LG  +H+   K+ H +   VS   SLI MYAKCGN++ AE             
Sbjct: 403 CNTMDICLGSQLHSLCLKSGHTRAVVVS--NSLISMYAKCGNLQNAELIFNFMAERDIVS 460

Query: 391 ------------------QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE-G 431
                             + FD M  + + +WNAM+     HG  +  L ++S M+ E  
Sbjct: 461 WTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKD 520

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
           + PD +T+V +   C   G   +G Q     ++   +         ++ +  + G   EA
Sbjct: 521 VIPDWVTYVTLFRGCADIGANKLGDQIIGHTVK-VGLILDTSVVNAVITMYSKCGRISEA 579

Query: 492 EALLKTMEMKPDAAIWTSLLGACRVHG 518
                 +  K D   W +++     HG
Sbjct: 580 RKAFDFLSRK-DLVSWNAMITGYSQHG 605



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 200/439 (45%), Gaps = 65/439 (14%)

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR-LVFNKSSLRD 195
           L+SC   SA++  + +H+ ++ +GL S  F+  +L++ Y   G L  AR L+ ++ +  +
Sbjct: 32  LRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEPN 91

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIRE---------------------ENFV---- 230
            +++  ++ GYA  G L DA +LF  MP R+                     + FV    
Sbjct: 92  VITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQ 151

Query: 231 -----PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL- 284
                PN  T   V+ +C  +G  E+   +  L+       +  V  AL+DM  +CG + 
Sbjct: 152 TGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMD 211

Query: 285 --------VK----------------------ARDLFESIEKRDVISWNVMIGGYTHTSD 314
                   +K                      A ++F+S+ +RDV+SWN++I   + +  
Sbjct: 212 FASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGR 271

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
            +EAL +   M    + P+  T+ S L ACA L +L+ GK +H  + +N   ++   + +
Sbjct: 272 VREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPY-VAS 330

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
           +++++YAKCG  K A++VF  +  +   SW  +I G   +G   +++ LF++M  E +  
Sbjct: 331 AMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAV 390

Query: 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494
           D      ++S C +   + +G Q  +  ++       +     ++ +  + G    AE +
Sbjct: 391 DQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVS-NSLISMYAKCGNLQNAELI 449

Query: 495 LKTMEMKPDAAIWTSLLGA 513
              M  + D   WT ++ A
Sbjct: 450 FNFMAER-DIVSWTGMITA 467



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 145/345 (42%), Gaps = 71/345 (20%)

Query: 240 LSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLF-ESIEKRD 298
           L +C    +L     + S +   GL S + + N L+  Y  CG L  AR+L  + I + +
Sbjct: 32  LRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEPN 91

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE--------------------------- 331
           VI+ N+M+ GY       +A+ LF +M   ++                            
Sbjct: 92  VITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQ 151

Query: 332 -----PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG-- 384
                PN  TF  V+ +C  LG  ++   +   + K   + ++  + T+L+DM  +CG  
Sbjct: 152 TGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQ-DDPDVQTALVDMLVRCGAM 210

Query: 385 -----------------------------NIKAAEQVFDGMGYKTLASWNAMISGLAMHG 415
                                         +  A ++F  M  + + SWN +IS L+  G
Sbjct: 211 DFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSG 270

Query: 416 KADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY 475
           +  +AL +   M G+G++PD  T+   L+AC     L+ G+Q    +I++    P +  Y
Sbjct: 271 RVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNL---PHIDPY 327

Query: 476 --GCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
               MV+L  + G F EA+ +  ++  + ++  WT L+G    +G
Sbjct: 328 VASAMVELYAKCGCFKEAKRVFSSLRDR-NSVSWTVLIGGFLQYG 371


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 241/626 (38%), Positives = 366/626 (58%), Gaps = 37/626 (5%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           +++L  C      KQ+HSQ I  G+        KL         G +SYA  +F  I EP
Sbjct: 38  ISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEP 97

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS-AISEGKQI 152
           + V+WNN+I+G S        ++ Y+ M+  G  P+++TFPF+L    +   A++ GK++
Sbjct: 98  DVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKL 157

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H HV+K GL S+ +V  +L+ MY+  G ++ AR VF++    D  S+  +I+GY      
Sbjct: 158 HCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEY 217

Query: 213 DDARQLFDEMPIREENFV-PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
           +++ +L  EM   E N V P   T++ VLSAC+ +   +L   V   +       +L + 
Sbjct: 218 EESIELLVEM---ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLE 274

Query: 272 NALIDMYSKCGDL---------VKARDL----------------------FESIEKRDVI 300
           NAL++ Y+ CG++         +KARD+                      F+ +  RD I
Sbjct: 275 NALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRI 334

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           SW +MI GY     + E+L +FR+M  + + P++ T +SVL ACA+LG+L++G+WI  YI
Sbjct: 335 SWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYI 394

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
           DKN  K N+V +  +LIDMY KCG  + A++VF  M  +   +W AM+ GLA +G+  +A
Sbjct: 395 DKNKIK-NDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEA 453

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
           + +F +M    +QPDDIT++GVLSACNH+G++D  R++F  M  D++I P L HYGCMVD
Sbjct: 454 IKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVD 513

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540
           +LGRAGL  EA  +L+ M M P++ +W +LLGA R+H    + E  AK +LELEP+N   
Sbjct: 514 MLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAV 573

Query: 541 YVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHI 600
           Y LL N+YAG  RW D+  +R ++ D  +KK PG S IEV    HEF+ GDK H QS+ I
Sbjct: 574 YALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEI 633

Query: 601 YEMLDEIDALLEKSGFVPDTSEVLYD 626
           Y  L+E+      + ++PDTSE+L++
Sbjct: 634 YMKLEELAQESTFAAYLPDTSELLFE 659


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 254/666 (38%), Positives = 395/666 (59%), Gaps = 11/666 (1%)

Query: 47   KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
            + VH  +++TGL + + A+S  + +   +  G +  A  +F+ +   +++ WN II    
Sbjct: 399  RVVHGHMLRTGLTDLKIAVSNGL-VNMYAKCGAIESASKIFQLMEATDRISWNTIISALD 457

Query: 107  LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
             + +   A+  Y  M  S   P+ +     L SCA +  ++ G+Q+H   +K GL+ D  
Sbjct: 458  QNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTS 517

Query: 167  VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS-RGYLDDARQLFDEMPIR 225
            V   L+ MY + G +     VFN  +  D VS+  ++   AS +  + +  ++F+ M   
Sbjct: 518  VSNVLVKMYGECGAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNM--M 575

Query: 226  EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
                +PN+ T + +L+A + +  LELG  V + +  HG+  +  V NALI  Y+K GD+ 
Sbjct: 576  RGGLIPNKVTFINLLAALSPLSVLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMG 635

Query: 286  KARDLFESI-EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
                LF ++ ++RD ISWN MI GY +  + +EA+     M+ S    +  TF  +L AC
Sbjct: 636  SCEHLFTNMSDRRDAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNAC 695

Query: 345  AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
            A + AL+ G  +HA+  ++H + ++V + ++L+DMY+KCG +  A ++F+ M  +   SW
Sbjct: 696  ASVAALERGMELHAFGIRSHLE-SDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSW 754

Query: 405  NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
            N+MISG A HG   KA+ +F  M+     PD +TFV VLSAC+HAGL++ G +YF  M+ 
Sbjct: 755  NSMISGYARHGLGRKAIEIFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEYFE-MMP 813

Query: 465  DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH---GRLE 521
            D+ I P+++HY C++DLLGRAG  D+ +  ++ M ++P+A IW ++L ACR       ++
Sbjct: 814  DHGILPQIEHYSCVIDLLGRAGKIDKIKEYIQRMPIEPNALIWRTVLVACRQSKDGSNID 873

Query: 522  LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
            LG   ++ LLE+EP+NP  YVL SN +A  G W+D A  RT +     KK  G S + + 
Sbjct: 874  LGREASRVLLEIEPQNPVNYVLASNFHAATGMWEDTAKARTAMRQATEKKEAGRSWVTLN 933

Query: 582  SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
              VH F+ GD+ HP +K IYE L+ +   +  +G+VP T   LYD++EE KE  LS+HSE
Sbjct: 934  DGVHTFIAGDRSHPNTKEIYEKLNFLIQNIRNAGYVPLTEYALYDLEEENKEELLSYHSE 993

Query: 642  KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
            KLAIA+ L  +  G  IRI+KNLRVCG+CH A + IS++ +R+II RD  RFHHFKDG C
Sbjct: 994  KLAIAFVLTRSSSG-PIRIMKNLRVCGDCHIAFRYISQMISRQIILRDSIRFHHFKDGKC 1052

Query: 702  SCNDYW 707
            SC DYW
Sbjct: 1053 SCGDYW 1058



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 118/493 (23%), Positives = 239/493 (48%), Gaps = 19/493 (3%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L LL +  +  + + +H ++IK GL++  F  + L+   + +    L+ A  VF+ + E 
Sbjct: 68  LPLLRRGGDANSPENLHVELIKRGLNHDLFLCNHLVN--SYAKGARLAAASQVFDEMPER 125

Query: 94  NQVIWNNIIRG---HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG- 149
           N V W  ++ G   H ++       +  +R + +G  P ++TF  +L++C        G 
Sbjct: 126 NAVSWTCLVSGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGF 185

Query: 150 -KQIHAHVLKLGLESDPFVHTSLINMYAQN--GELESARLVFNKSSLRDAVSYTALITGY 206
             Q+H  V K    S+  V  +LI+MY     G    A+ VF+ + +RD +++ AL++ Y
Sbjct: 186 AVQVHGLVSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVY 245

Query: 207 ASRGYLDDARQLFDEMPIREE--NFVPNESTVVTVLSACAHMGSLE-LGNWVCSLIEGHG 263
           A +G +     LF +M   +      P E T  ++++A +       + + V   +   G
Sbjct: 246 AKKGDVASTFTLFKDMQRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSG 305

Query: 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFR 323
             S+L+V +AL+  +++ G   +A+D+F S+++++ ++ N +I G       +EA+ +F 
Sbjct: 306 CSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFV 365

Query: 324 QMLQSNIEPNDVTFLSVLPACAYLG----ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
              ++ ++ N  T++ +L A A        L +G+ +H ++ +       +++   L++M
Sbjct: 366 GT-RNTVDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNM 424

Query: 380 YAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439
           YAKCG I++A ++F  M      SWN +IS L  +G  ++A+  +S M    + P +   
Sbjct: 425 YAKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFAL 484

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME 499
           +  LS+C    LL  G+Q     ++ + +         +V + G  G   +   +  +M 
Sbjct: 485 ISSLSSCAGLKLLTAGQQVHCDAVK-WGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMA 543

Query: 500 MKPDAAIWTSLLG 512
            + D   W +++G
Sbjct: 544 -EHDEVSWNTMMG 555


>gi|297737119|emb|CBI26320.3| unnamed protein product [Vitis vinifera]
          Length = 522

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/392 (55%), Positives = 283/392 (72%), Gaps = 1/392 (0%)

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
           K  L LF +M +S I+ N+VT ++++ ACA LGAL  G W H Y+ K++ KLN+  + T+
Sbjct: 132 KSVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHF-VGTA 190

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           LIDMY+KCG +  A Q+FD + ++    +NAMI G A+HG   +AL LF +M  EGL PD
Sbjct: 191 LIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPD 250

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
           D+T V  + +C+H GL++ G   F +M + Y + PKL+HYGC+VDLLGRAG   EAE  +
Sbjct: 251 DVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERV 310

Query: 496 KTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555
             M MKP+A IW SLLGA RVHG LE+GE V KHL++LEPE  G YVLLSNMYA   RWD
Sbjct: 311 LNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYASINRWD 370

Query: 556 DVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSG 615
           DV  +R  + D G+ KVPG S +EVG  +HEFL+GDK HP+SK IY  L+E+   L + G
Sbjct: 371 DVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSRRLHEYG 430

Query: 616 FVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATK 675
             P T EVL+D++EE KE ALS+HSE+LAIA+ LI++     IRI+KNLRVCG+CH+++K
Sbjct: 431 HKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPIRIIKNLRVCGDCHTSSK 490

Query: 676 LISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           LISKI+ REII RDRNRFHHFK+G CSC+DYW
Sbjct: 491 LISKIYEREIIVRDRNRFHHFKEGACSCSDYW 522



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 181/414 (43%), Gaps = 79/414 (19%)

Query: 30  NQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFET 89
           N P+L LL KC  +  +KQVH+ +I TGL    + LS+++ I +   F   ++AL +F  
Sbjct: 9   NHPTLQLLEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLISSTIVF---THALSIFNH 65

Query: 90  IREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG 149
           I  P   ++N      +L SS            L+   P+T+                  
Sbjct: 66  IPNPTIFLYN------TLISS------------LANIKPHTH------------------ 89

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
                  +   L S    HT+L      NG                  ++ +L     S+
Sbjct: 90  -------IAFSLYSRVLTHTTL----KPNG-----------------FTFPSLFKACGSQ 121

Query: 210 GYL-------DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
            +L            LF EM  ++     NE T+V ++SACA +G+L  G W    +  H
Sbjct: 122 PWLRHDIFLIKSVLTLFIEM--QKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKH 179

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
            L  N  V  ALIDMYSKCG L  A  LF+ +  RD + +N MIGG+       +AL LF
Sbjct: 180 NLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLF 239

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
           ++M    + P+DVT +  + +C+++G ++ G  +   + + +     +  +  L+D+  +
Sbjct: 240 KKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGR 299

Query: 383 CGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
            G ++ AE+    M  K  A  W +++    +HG  +    +   +I   L+P+
Sbjct: 300 AGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLI--QLEPE 351


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/441 (49%), Positives = 299/441 (67%), Gaps = 1/441 (0%)

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML 326
           NL V  A+I  YS+ G +  AR +F+ +E++D++ W+ MI GY  +   +EAL LF +M 
Sbjct: 13  NLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQ 72

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
              I+P+ VT LSV+ ACA LG LD  KWIH Y+DKN      + +  +LIDMYAKCGN+
Sbjct: 73  VFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLG-GALPVNNALIDMYAKCGNL 131

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
            AA  VF+ M  + + SW +MI+  A+HG A  AL  F +M  E ++P+ +TFVGVL AC
Sbjct: 132 GAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYAC 191

Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
           +HAGL++ GR+ F +M  ++ I+PK +HYGCMVDL GRA L  +A  L++TM + P+  I
Sbjct: 192 SHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVI 251

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
           W SL+ AC++HG  ELGE  AK +LELEP++ GA V LSN+YA   RW DV  +R  +  
Sbjct: 252 WGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQDVGELRNLMKQ 311

Query: 567 KGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYD 626
           +G+ K  GCS IE+ + V+EF++ DK H Q+  IYE LDE+   L+  G+ P+T  VL D
Sbjct: 312 RGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVGYTPNTRSVLVD 371

Query: 627 MDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREII 686
           ++EE K+  +  HSEKLA+ YGL+    G+ IRIVKNLRVC +CH+  KL+SK++  EII
Sbjct: 372 VEEEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIKLVSKVYGMEII 431

Query: 687 ARDRNRFHHFKDGNCSCNDYW 707
            RDR RFHH+K G CSCNDYW
Sbjct: 432 VRDRTRFHHYKAGVCSCNDYW 452



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 91/270 (33%), Positives = 155/270 (57%), Gaps = 5/270 (1%)

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V T++I+ Y++ G +E ARL+F++   +D V ++A+I+GYA      +A  LF EM +  
Sbjct: 16  VLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVF- 74

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
               P++ T+++V+SACA +G L+   W+   ++ +GLG  L V NALIDMY+KCG+L  
Sbjct: 75  -GIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGA 133

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           AR +FE ++ R+VISW  MI  +    D   AL  F QM   NI+PN VTF+ VL AC++
Sbjct: 134 ARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACSH 193

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWN 405
            G ++ G+   A +   H        +  ++D++ +   ++ A ++ + M     +  W 
Sbjct: 194 AGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIWG 253

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           ++++   +HG+ +  L  F+      L+PD
Sbjct: 254 SLMAACQIHGENE--LGEFAAKQVLELEPD 281



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 135/265 (50%), Gaps = 6/265 (2%)

Query: 71  ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNT 130
           I   S  G +  A L+F+ + E + V W+ +I G++ S  P  A+  +  M + G  P+ 
Sbjct: 21  ISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFGIKPDQ 80

Query: 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK 190
            T   ++ +CA++  +   K IH +V K GL     V+ +LI+MYA+ G L +AR VF K
Sbjct: 81  VTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAARGVFEK 140

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250
              R+ +S+T++I  +A  G   +A + F +M  ++EN  PN  T V VL AC+H G +E
Sbjct: 141 MQSRNVISWTSMINAFAIHGDASNALKFFYQM--KDENIKPNGVTFVGVLYACSHAGLVE 198

Query: 251 LGNWV-CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGG 308
            G     S+   H +         ++D++ +   L  A +L E++    +V+ W  ++  
Sbjct: 199 EGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIWGSLMAA 258

Query: 309 YTHTSDYKEALMLFRQMLQSNIEPN 333
                + +      +Q+L+  +EP+
Sbjct: 259 CQIHGENELGEFAAKQVLE--LEPD 281


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 250/671 (37%), Positives = 378/671 (56%), Gaps = 9/671 (1%)

Query: 37  LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQV 96
           L  CT    +  +H   IK GL    F  + L++  A    G L+ A  VF  + + + V
Sbjct: 149 LPGCT----VPSLHPFAIKFGLDTHVFVCNTLLD--AYCKHGLLAAARRVFLEMHDKDAV 202

Query: 97  IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHV 156
            +N ++ G S       A++ +  M  +G     +TF  IL   A ++ +  G Q+HA V
Sbjct: 203 TYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALV 262

Query: 157 LKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDAR 216
           L+     + FV+ SL++ Y++   L+  R +F++   RD VSY  +I  YA         
Sbjct: 263 LRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVL 322

Query: 217 QLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALID 276
           +LF EM  ++  F        T+LS    +  + +G  + + +   GL S   + NALID
Sbjct: 323 RLFREM--QKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALID 380

Query: 277 MYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVT 336
           MYSKCG L  A+  F +  ++  ISW  +I GY     ++EAL LF  M ++ + P+  T
Sbjct: 381 MYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRAT 440

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
           F S++ A + L  + LG+ +H+Y+ ++  K ++V   + L+DMYAKCG +  A + FD M
Sbjct: 441 FSSIIKASSSLAMIGLGRQLHSYLIRSGYK-SSVFSGSVLVDMYAKCGCLDEALRTFDEM 499

Query: 397 GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR 456
             +   SWNA+IS  A +G+A  A+ +F  M+  G  PD +TF+ VL+AC+H GL D   
Sbjct: 500 PERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECM 559

Query: 457 QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRV 516
           +YF+ M   Y ISP  +HY C++D LGR G F + + +L  M  K D  IWTS+L +CR+
Sbjct: 560 KYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRI 619

Query: 517 HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCS 576
           HG  EL    A  L  +EP +   YV+LSN+YA AG+W+D A ++  + D+G++K  G S
Sbjct: 620 HGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYS 679

Query: 577 SIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGAL 636
            +E+   ++ F   D   P    I + LD +   ++K G+ PD +  L+ +D E K  +L
Sbjct: 680 WVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESL 739

Query: 637 SHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHF 696
            +HSE+LAIA+ L++T  GT IRI+KNL  C +CH+  K+ISKI NR+II RD  RFHHF
Sbjct: 740 KYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHF 799

Query: 697 KDGNCSCNDYW 707
           KDG CSC DYW
Sbjct: 800 KDGVCSCGDYW 810



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 140/460 (30%), Positives = 231/460 (50%), Gaps = 22/460 (4%)

Query: 59  HNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFY 118
           H   F+L+ ++   A S  GDL  A  +F +    N   W  ++R H+ +     A+  +
Sbjct: 71  HKNIFSLNLILS--AYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLF 128

Query: 119 VRMILSGFVPNTYTFPFILK--SCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYA 176
             M+  G +P+  T   +L    C   S       +H   +K GL++  FV  +L++ Y 
Sbjct: 129 RAMLGEGVIPDRVTVTTVLNLPGCTVPS-------LHPFAIKFGLDTHVFVCNTLLDAYC 181

Query: 177 QNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTV 236
           ++G L +AR VF +   +DAV+Y A++ G +  G    A QLF  M  R         T 
Sbjct: 182 KHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAM--RRAGIPATHFTF 239

Query: 237 VTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK 296
            ++L+  A M  L LG+ V +L+       N+ V N+L+D YSKC  L   R LF+ + +
Sbjct: 240 SSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPE 299

Query: 297 RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
           RD +S+NV+I  Y         L LFR+M +   +   + + ++L     L  + +GK I
Sbjct: 300 RDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQI 359

Query: 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGK 416
           HA +        ++ L  +LIDMY+KCG + AA+  F     K+  SW A+I+G   +G+
Sbjct: 360 HAQLVLLGLASEDL-LGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQ 418

Query: 417 ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD-YKISPKLQHY 475
            ++AL LFS M   GL+PD  TF  ++ A +   ++ +GRQ  + +I+  YK S  +   
Sbjct: 419 HEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSS--VFSG 476

Query: 476 GCMVDLLGRAGLFDEAEALLKTMEMKPD--AAIWTSLLGA 513
             +VD+  + G  DEA   L+T +  P+  +  W +++ A
Sbjct: 477 SVLVDMYAKCGCLDEA---LRTFDEMPERNSISWNAVISA 513


>gi|302801035|ref|XP_002982274.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
 gi|300149866|gb|EFJ16519.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
          Length = 920

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 256/695 (36%), Positives = 388/695 (55%), Gaps = 21/695 (3%)

Query: 27  LLQNQPS-LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSY 82
           LL N+ S +A+LS C +  ++   + +H+++ + G        + L+ +      G +  
Sbjct: 233 LLPNRASFVAILSSCGDHSSLPLARSIHARVEELGFLGDVVVATALVTM--YGRCGSVDE 290

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           ++ VFE +   N V WN +I   +       A   Y RM   GF PN  TF   LK+   
Sbjct: 291 SIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACS 350

Query: 143 ISA--ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYT 200
            S+  + E   +H  +   GLE D  V T+L+ MY   G ++ AR  F+    ++ VS+ 
Sbjct: 351 SSSQDLGESAALHGWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWN 410

Query: 201 ALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE 260
           A++T Y   G   +A +LF  M  + ++  PN+ + + VL  C  +        + + + 
Sbjct: 411 AMLTAYGDNGRAREAMELFAAM--KRQSLAPNKVSYLAVLGCCEDVSE---ARSIHAEVV 465

Query: 261 GHGL-GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEAL 319
           G+GL      + N ++ M+++ G L +A   F++   +D +SWN  +   +   D   A+
Sbjct: 466 GNGLFAQESSIANGVVRMFARSGSLEEAVAAFDATVVKDSVSWNTKVAALSAREDLHGAI 525

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
             F  M      P+  T +SV+  CA LG L+LG+ I   +    +   +V + +++++M
Sbjct: 526 TAFYTMQHEGFRPDKFTLVSVVDVCADLGTLELGRSIQQQLSAAIEVERDVVVASAVMNM 585

Query: 380 YAKCGN-IKAAEQVFDGM--GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG-LQPD 435
            AKCG+ +   E++F  M    K L +WN MI+  A HG   KAL LF  M     ++PD
Sbjct: 586 VAKCGSSVDECERLFARMPDDRKDLVAWNTMIAAYAQHGHGRKALKLFRIMQQRSSVRPD 645

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK-LQHYGCMVDLLGRAGLFDEAEAL 494
             TFV VLS C+HAGL++ G   F    +   I  + ++HY C+VD+LGR G   EAE  
Sbjct: 646 SSTFVSVLSGCSHAGLVEDGIHCFFLAREVLGIEQQPVEHYACLVDVLGRMGYLREAEDF 705

Query: 495 LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554
           ++ M +  D+ +WTSLLGAC  +G LE GE  A+  +EL   +   YV+LSN+YA AGRW
Sbjct: 706 IRKMPLPADSVVWTSLLGACSSYGDLEGGERAARAFIELYRSDSVGYVVLSNIYAAAGRW 765

Query: 555 DDVATIRTRLNDKGMKK-VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEK 613
           +D   +R  + ++ +KK VPG SSI V + VHEF   D+ HPQS  IY  L+ +  L+ +
Sbjct: 766 EDSIRVREDMAERRVKKRVPGKSSIVVKNRVHEFFARDRSHPQSDAIYAELERLKGLIRE 825

Query: 614 SGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSA 673
           +G+VPDT  VL+D++EE KE  L +HSEKLAIA+GLIS     +IR++KNLRVC +CH+A
Sbjct: 826 AGYVPDTRLVLHDVEEEQKEQLLWYHSEKLAIAFGLISVPHRHSIRVIKNLRVCKDCHTA 885

Query: 674 TKLISKIFNREIIARDRNRFHHF-KDGNCSCNDYW 707
           TK I+++  REI  RD NRFHHF KDG CSC DYW
Sbjct: 886 TKFIARVTQREIAVRDCNRFHHFGKDGECSCGDYW 920



 Score =  193 bits (491), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 140/528 (26%), Positives = 243/528 (46%), Gaps = 30/528 (5%)

Query: 36  LLSKC---TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LL +C    ++   +Q+H QI+K GL       + L+++   S    L  A   F  +R 
Sbjct: 30  LLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQM--YSKCRSLDDANAAFSALRS 87

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV---PNTYTFPFILKSCA-------- 141
                WN +I   +  SSP      Y RM L       PN  T   +L + A        
Sbjct: 88  RGIATWNTLI---AAQSSPAAVFDLYTRMKLEERAENRPNKLTIIAVLGAIASGDPSSSS 144

Query: 142 --KISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSY 199
             +  +I++ + +H  +    LE D FV T+L++ Y + G +ESA  VF++  + D + +
Sbjct: 145 SSRAPSIAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLICW 204

Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
            A I   A      D R L     +  E  +PN ++ V +LS+C    SL L   + + +
Sbjct: 205 NAAIMACAGNDERPD-RALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARV 263

Query: 260 EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEAL 319
           E  G   ++ V  AL+ MY +CG + ++  +FE++  R+ +SWN MI  +        A 
Sbjct: 264 EELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAF 323

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGK--WIHAYIDKNHQKLNNVSLWTSLI 377
            ++ +M Q    PN +TF++ L A     + DLG+   +H +I     +  +V + T+L+
Sbjct: 324 AIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLE-GDVMVGTALV 382

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI 437
            MY   G I  A   FD +  K + SWNAM++    +G+A +A+ LF+ M  + L P+ +
Sbjct: 383 TMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKV 442

Query: 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT 497
           +++ VL  C     +   R     ++ +   + +      +V +  R+G  +EA A    
Sbjct: 443 SYLAVLGCCED---VSEARSIHAEVVGNGLFAQESSIANGVVRMFARSGSLEEAVAAFDA 499

Query: 498 MEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545
             +K D+  W + + A      L  G   A + ++ E   P  + L+S
Sbjct: 500 TVVK-DSVSWNTKVAALSAREDLH-GAITAFYTMQHEGFRPDKFTLVS 545



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/402 (28%), Positives = 192/402 (47%), Gaps = 20/402 (4%)

Query: 132 TFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKS 191
           T   +L+ C   + +++G+Q+H  ++K GL  +  +   L+ MY++   L+ A   F+  
Sbjct: 26  TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSAL 85

Query: 192 SLRDAVSYTALITGYASRGYLDDARQLFDEMPI--REENFVPNESTVVTVLSACA----- 244
             R   ++  LI   +S   + D   L+  M +  R EN  PN+ T++ VL A A     
Sbjct: 86  RSRGIATWNTLIAAQSSPAAVFD---LYTRMKLEERAENR-PNKLTIIAVLGAIASGDPS 141

Query: 245 -----HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV 299
                   S+     V   I G  L  +L V  AL+D Y KCG +  A ++F  I+  D+
Sbjct: 142 SSSSSRAPSIAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDL 201

Query: 300 ISWNVMIGGYTHTSDYKE-ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
           I WN  I       +  + AL+L R+M    + PN  +F+++L +C    +L L + IHA
Sbjct: 202 ICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHA 261

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKAD 418
            +++    L +V + T+L+ MY +CG++  +  VF+ M  +   SWNAMI+  A  G   
Sbjct: 262 RVEE-LGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRS 320

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ-YFNAMIQDYKISPKLQHYGC 477
            A +++ RM  EG +P+ ITFV  L A   +   D+G     +  I    +   +     
Sbjct: 321 AAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVMVGTA 380

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
           +V + G  G  D A A    +  K +   W ++L A   +GR
Sbjct: 381 LVTMYGSTGAIDRARAAFDAIPAK-NIVSWNAMLTAYGDNGR 421



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 140/298 (46%), Gaps = 15/298 (5%)

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           ++++P E T+  +L  C     L  G  +   I   GL  N  + N L+ MYSKC  L  
Sbjct: 19  DDYIPIE-TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDD 77

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA- 345
           A   F ++  R + +WN +I   +  +   +     +   ++   PN +T ++VL A A 
Sbjct: 78  ANAAFSALRSRGIATWNTLIAAQSSPAAVFDLYTRMKLEERAENRPNKLTIIAVLGAIAS 137

Query: 346 ---------YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
                       ++   + +H  I +      ++ + T+L+D Y KCG +++A +VF  +
Sbjct: 138 GDPSSSSSSRAPSIAQARIVHDDI-RGSDLERDLFVATALLDAYGKCGCVESALEVFSRI 196

Query: 397 GYKTLASWNAMISGLAMHG-KADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
               L  WNA I   A +  + D+AL L  RM  EGL P+  +FV +LS+C     L + 
Sbjct: 197 QVPDLICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLA 256

Query: 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
           R   +A +++      +     +V + GR G  DE+ A+ + M ++   + W +++ A
Sbjct: 257 RS-IHARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVS-WNAMIAA 312


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 251/666 (37%), Positives = 382/666 (57%), Gaps = 11/666 (1%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K VH   +K  L       + L+++   S  G ++ A ++F+     N V WN ++ G S
Sbjct: 309 KGVHGLAMKLSLDKEVVVNNALMDM--YSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFS 366

Query: 107 LSSSPVVAIKFYVRMILSG--FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG-LES 163
            +           +M+  G     +  T    +  C + S +   K++H + LK   + +
Sbjct: 367 AAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCYSLKQEFVHN 426

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDE-M 222
           +  V  + +  YA+ G L  A  VF     +   S+ ALI GY+      D R   D   
Sbjct: 427 NELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQS---SDPRLSLDAYF 483

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
            ++    +P+  TV ++LSAC+ + SL+LG  V  LI  + L  +  V  +L+ +Y  CG
Sbjct: 484 QMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCG 543

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
           +L  A  LF+++E + ++SWN M+ GY      + AL LFRQM+   ++P +++ +SV  
Sbjct: 544 ELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFG 603

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           AC+ L +L LG+  H Y  K   + +N  +  S+IDMYAK G++  + +VF+G+  +++A
Sbjct: 604 ACSLLPSLRLGREAHGYALKCLLE-DNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVA 662

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           SWNAM+ G  +HG+A +A+ LF  M   G  PD++TF+GVL+ACNH+GL+  G  Y + M
Sbjct: 663 SWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQM 722

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEA-EALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
              + ++P L+HY C++D+L RAG  DEA +   + M  +P   IW  LL +CR+H  LE
Sbjct: 723 KTLFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLE 782

Query: 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
           +GE +A  L   EPE P  YVLLSN+YAG+G+WD+V  +R R+ +  ++K  GCS IE+ 
Sbjct: 783 MGEKIAAKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDAGCSWIELN 842

Query: 582 SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
             V  F+ G+      + I  +   ++  + K G+ PDTS V +D+ EE K   L  HSE
Sbjct: 843 GKVFSFVAGESSLDGFEEIKSLWSVLEREIGKMGYRPDTSSVQHDLSEEEKTEQLRGHSE 902

Query: 642 KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
           KLAI YGLI T  GTT+R+ KNLR+C +CH+A KLISK+  REI+ RD  RFHHFK+G C
Sbjct: 903 KLAITYGLIRTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGFC 962

Query: 702 SCNDYW 707
           SC DYW
Sbjct: 963 SCGDYW 968



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 165/612 (26%), Positives = 293/612 (47%), Gaps = 46/612 (7%)

Query: 42  NMQNIKQVHSQIIKTG-LHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNN 100
           ++Q  +++H  + ++  L N     +++I + ++    D S +  VF+ +R+ N   WN 
Sbjct: 96  DIQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRS--VFDALRKKNLFQWNA 153

Query: 101 IIRGHSLSSSPVVAIKFYVRMIL-SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKL 159
           +I  +S +      ++ +V+MI  SG +P+ +TFP ++K+CA +S +  G  +H  V+K 
Sbjct: 154 VISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKT 213

Query: 160 GLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLF 219
            L  D FV  +L++ Y  NG +  A  VF     R+ VS+ ++I  ++  G  ++   L 
Sbjct: 214 RLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLL 273

Query: 220 DEMPIREEN--FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDM 277
            +M  +++   F P+ +T+ TVL  CA    + +G  V  L     L   + V NAL+DM
Sbjct: 274 GQMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDM 333

Query: 278 YSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ--SNIEPNDV 335
           YSKCG +  A+ +F+    ++V+SWN M+GG++   D  +   L RQML    ++  ++V
Sbjct: 334 YSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEV 393

Query: 336 TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
           T L+ +P C     L   K +H Y  K     NN  +  + +  YAKCG++  A +VF  
Sbjct: 394 TILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCS 453

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
           +  KT+ SWNA+I G +       +L  + +M   GL PD  T   +LSAC+    L +G
Sbjct: 454 IRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLG 513

Query: 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACR 515
           ++    +I++ ++      Y  ++ L    G    A  L   ME K   + W +++    
Sbjct: 514 KEVHGLIIRN-RLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVS-WNTMVNGYL 571

Query: 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA-------GRWDDVATIRTRLNDKG 568
            +G  E   S+ + ++ L    P    ++S   A +       GR      ++  L D  
Sbjct: 572 QNGFPERALSLFRQMV-LYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNA 630

Query: 569 MKKVPGCSSIEV----GSVVHEFLV-----------------GDKVHPQSKHIYEMLDEI 607
                 CS I++    GSV+  F V                 G  +H ++K   ++ +E 
Sbjct: 631 F---IACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEE- 686

Query: 608 DALLEKSGFVPD 619
              ++++G  PD
Sbjct: 687 ---MQRTGHCPD 695


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/425 (51%), Positives = 295/425 (69%), Gaps = 1/425 (0%)

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
           DL   R L   +EK    SW  MI GY      KEA+ LF +M ++ ++ N+VT ++VL 
Sbjct: 176 DLSNGRILHGVVEKVGFRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLA 235

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           ACA LGALDLG  IH Y ++ H    NV +  +LIDMY KCG ++ A +VF+ M  +T+ 
Sbjct: 236 ACADLGALDLGMRIHEYSNR-HGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVV 294

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           SW+AMI GLAMHG+A++AL LFS M   G++P+ +TF+G+L AC+H GL+  GR++F +M
Sbjct: 295 SWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASM 354

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
            +DY I P+++HYGCMVDLL RAGL  EA   +  M MKP+  +W +LLGACRVH  +E+
Sbjct: 355 TRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEM 414

Query: 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582
            E   KHLLEL+P N G YV+LSN+YA AGRW+D A +R  + D+ +KK PG SSI V  
Sbjct: 415 AEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDG 474

Query: 583 VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEK 642
           VVHEF+ G++ HP ++ I++  +E+   +   G+VP+TS VL D++E  K   +S HSEK
Sbjct: 475 VVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEK 534

Query: 643 LAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCS 702
           LA+ +GL++T   T IRI+KNLR+C +CHSA KLIS I NREI+ RDRNRFH F D +CS
Sbjct: 535 LALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCS 594

Query: 703 CNDYW 707
           C DYW
Sbjct: 595 CRDYW 599



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 202/414 (48%), Gaps = 49/414 (11%)

Query: 17  FPPSSDPPYKLLQN-QPSLALLSKCTNMQN------IKQVHSQIIKTGLHNTQFALSKLI 69
           FP    P    + N +P  +   K   ++N      ++QVH+QIIKT    +   L+++ 
Sbjct: 41  FPIPQSPNRNQIHNVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRVG 100

Query: 70  EICAVSPFGDLSYALLVFETI--REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV 127
            +CA +P     YA  +F+ +  ++P   +WN+ ++  +   SP+ AI  + R+      
Sbjct: 101 LVCAFTP--SFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVC 158

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P+T+T   +L++C  +  +S G+ +H  V K+G  S                        
Sbjct: 159 PDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRS------------------------ 194

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
                      +T++I GY   G   +A  LF +M   E     NE TVV VL+ACA +G
Sbjct: 195 -----------WTSMIAGYVQCGKAKEAIHLFAKM--EEAGVKCNEVTVVAVLAACADLG 241

Query: 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG 307
           +L+LG  +      HG   N+ ++N LIDMY KCG L +A  +FE +E+R V+SW+ MIG
Sbjct: 242 ALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIG 301

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
           G       +EAL LF  M Q  IEPN VTF+ +L AC+++G +  G+   A + +++  +
Sbjct: 302 GLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGII 361

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKA 420
             +  +  ++D+ ++ G +  A +    M  K     W A++    +H   + A
Sbjct: 362 PQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMA 415


>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
 gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 255/677 (37%), Positives = 380/677 (56%), Gaps = 70/677 (10%)

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSS----PVVAIKFYVRMILSGFVPNTYTFPF 135
           L Y L +F+ +  P   + +  +R    +S+    PV+ ++   R  +     + +TF F
Sbjct: 51  LRYVLSLFDRLPHPTTFLHDTALRACLQASAGADHPVLILRRMRRGGVRM---SAFTFHF 107

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDP-FVHTSLINMYAQNGELESARLVFNKSSLR 194
           + + CA  +     + +HA  L+  L S    V   LI+MYA  G  + AR  F++  ++
Sbjct: 108 VFRCCAAGAGAGLCRMLHAACLRTMLPSAARIVANPLIHMYASLGLTDDARRAFDEVPVK 167

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIR----------------------------- 225
           DAV +  +I G    G LD+AR+L  + P R                             
Sbjct: 168 DAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCML 227

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
            +   P+E  V+  LSAC+ + +LE G  +  L+    +     +   LIDMY+KCGD+ 
Sbjct: 228 SDGVEPDEVAVIGALSACSKLKNLEFGRLLHLLVGKKRIQMTDKLVVTLIDMYAKCGDIA 287

Query: 286 KA--------------------------------RDLFESIEKRDVISWNVMIGGYTHTS 313
           +A                                R LF+ +  RDVI++N MI GY H+ 
Sbjct: 288 QAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHSG 347

Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
             ++AL LF Q+ +  +  ++ T +S+L ACA LGAL  G+ +HA I++   +  +V L 
Sbjct: 348 RLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQGRALHASIEQRIVE-EDVYLV 406

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
           T+L+DMY KCG +  A  VF  MG + + +W+AMI+GLA +G    AL  F +M  +G Q
Sbjct: 407 TALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQMKRDGFQ 466

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
           P  +T++ VL+AC+H+ LL+ GRQ+FN M   +K+ P+++HYGCM+DLL R+GL DEA  
Sbjct: 467 PTSVTYIAVLTACSHSSLLNEGRQHFNEMRSLHKLHPQIEHYGCMIDLLARSGLLDEAMH 526

Query: 494 LLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGR 553
           L++TM M+P+A IW S+L ACRVH  ++L    A+HLL+L PE    YV L N+Y  + +
Sbjct: 527 LVQTMPMQPNAVIWASILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQ 586

Query: 554 WDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEK 613
           W +   IR  + ++G+KK  G SSI V   VH+F+V D+ HP +  I  M++EI   L+ 
Sbjct: 587 WVEAKRIRMLMEEQGVKKTAGYSSITVAGQVHKFVVNDQSHPWTLEIITMMEEIARRLKS 646

Query: 614 SGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSA 673
           +G+ P TS +  D+DEE KE AL  HSEK+AIA+GLIS  P   I I+KNLRVC +CHSA
Sbjct: 647 AGYSPATSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPNLPIHIMKNLRVCEDCHSA 706

Query: 674 TKLISKIFNREIIARDR 690
            KLIS+++NREII RDR
Sbjct: 707 IKLISQLWNREIIVRDR 723



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 133/282 (47%), Gaps = 43/282 (15%)

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
            G +  A  +F+ +   + + +N++I G+  S     A++ ++++   G   + +T   +
Sbjct: 315 LGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSL 374

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L +CA + A+ +G+ +HA + +  +E D ++ T+L++MY + G ++ A  VF++   RD 
Sbjct: 375 LTACASLGALPQGRALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEATAVFHRMGERDV 434

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG---- 252
            +++A+I G A  G   DA + F +M  + + F P   T + VL+AC+H   L  G    
Sbjct: 435 HTWSAMIAGLAFNGMGMDALESFCQM--KRDGFQPTSVTYIAVLTACSHSSLLNEGRQHF 492

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
           N + SL   H L   +     +ID+ ++ G L +A  L +++                  
Sbjct: 493 NEMRSL---HKLHPQIEHYGCMIDLLARSGLLDEAMHLVQTMP----------------- 532

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGK 354
                            ++PN V + S+L AC     +DL +
Sbjct: 533 -----------------MQPNAVIWASILSACRVHKNIDLAR 557


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/511 (45%), Positives = 337/511 (65%), Gaps = 9/511 (1%)

Query: 199 YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           +  +I GY+      +A  L+  M I +    PN  T   +L++CA + SLE G+ V S 
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSM-IAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSH 60

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
           I  HG  S+L V NALI +YS  G+L  AR LF+    RD++S+N MI GY   +  + A
Sbjct: 61  IIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESA 120

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI-HAYIDKNHQKLNNVSLWTSLI 377
           L LF +M  S+    +VT ++VL ACA LGA DLGK + H YI+      N + L  +++
Sbjct: 121 LCLFGEMQNSD----EVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTI-LTAAVM 175

Query: 378 DMYAKCGNIKAAEQVFDGMG--YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           DMYAKCG+I +A ++F  +G   KT   +N+MI+GLA HG  + A+++F  +I  GL+PD
Sbjct: 176 DMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPD 235

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495
           ++TFVGVL AC H+GL++ G++ F +M   Y I P+++HYGCMVDLLGR G  +EA  L+
Sbjct: 236 EVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLV 295

Query: 496 KTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555
           + M  + ++ IW +LL ACR HG +++GE   + LLE+E ++   YVLLSN+ A A +W+
Sbjct: 296 QKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWE 355

Query: 556 DVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSG 615
           +   +R  + D G++K PG S IE+G  +H F+  DK HPQ K I  ML ++   L+ +G
Sbjct: 356 EARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAG 415

Query: 616 FVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATK 675
           +VP+T++V++D+DEE KE  +S+HSEKLA+A+GL+   P  TIRIVKNLR+C +CH A K
Sbjct: 416 YVPNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFK 475

Query: 676 LISKIFNREIIARDRNRFHHFKDGNCSCNDY 706
           L+S+I+ REI  RD  RFHHF++G+CSC D+
Sbjct: 476 LVSEIYGREITVRDTMRFHHFRNGSCSCMDF 506



 Score =  201 bits (512), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 136/429 (31%), Positives = 220/429 (51%), Gaps = 58/429 (13%)

Query: 97  IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVP-NTYTFPFILKSCAKISAISEGKQIHAH 155
           +WN +IRG+S S +P  AI  Y+ MI  G  P N +TFPF+L SCA++S++  G ++H+H
Sbjct: 1   MWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSH 60

Query: 156 VLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDA 215
           ++K G ESD FV  +LI++Y+  G L  AR +F++S +RD VSY  +I GYA     + A
Sbjct: 61  IIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESA 120

Query: 216 RQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC-SLIEGHGLGSNLHVTNAL 274
             LF EM    +N   +E T+V VLSACA +G+ +LG  +    IE      N  +T A+
Sbjct: 121 LCLFGEM----QN--SDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAV 174

Query: 275 IDMYSKCGDLVKARDLFESIEK--RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           +DMY+KCG +  A ++F  + K  +    +N MI G       + A+ +FR+++ + ++P
Sbjct: 175 MDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKP 234

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           ++VTF+ VL AC + G ++ GK                                K  E +
Sbjct: 235 DEVTFVGVLCACGHSGLIEEGK--------------------------------KLFESM 262

Query: 393 FDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           F+  G K  +  +  M+  L  +G  ++A  L  +M     + + + +  +LSAC   G 
Sbjct: 263 FNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKM---PFEANSVIWRALLSACRTHGN 319

Query: 452 LDIGRQYFNAMIQDYKISPKLQH---YGCMVDLLGRAGLFDEAEALLKTME----MKPDA 504
           + IG      +++      + QH   Y  + ++L  A  ++EA  + K ME     KP  
Sbjct: 320 VKIGEIAGQKLLE-----MEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPG 374

Query: 505 AIWTSLLGA 513
             +  L GA
Sbjct: 375 WSYIELGGA 383



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 143/280 (51%), Gaps = 18/280 (6%)

Query: 36  LLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LL+ C  + +++   +VHS IIK G  +  F  + LI + +V  FG+L+ A  +F+    
Sbjct: 41  LLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSV--FGNLNLARTLFDESLV 98

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V +N +I+G++  + P  A+  +  M  S    +  T   +L +CA++ A   GK++
Sbjct: 99  RDLVSYNTMIKGYAEVNQPESALCLFGEMQNS----DEVTLVAVLSACARLGAFDLGKRL 154

Query: 153 HAHVLKLGL-ESDPFVHTSLINMYAQNGELESARLVFNK--SSLRDAVSYTALITGYASR 209
           +   ++ G+   +  +  ++++MYA+ G ++SA  +F +   +++    + ++I G A  
Sbjct: 155 YHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQH 214

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC-SLIEGHGLGSNL 268
           G  + A  +F E+        P+E T V VL AC H G +E G  +  S+   +G+   +
Sbjct: 215 GLGETAITVFRELI--STGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQM 272

Query: 269 HVTNALIDMYSKCGDLVKARDLFESI--EKRDVISWNVMI 306
                ++D+  + G L +A DL + +  E   VI W  ++
Sbjct: 273 EHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVI-WRALL 311


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/675 (35%), Positives = 392/675 (58%), Gaps = 6/675 (0%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L+     T ++ + Q+HS II+ G   +    + L++    +   D++  L  F  +   
Sbjct: 150 LSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQL--FSEMPTK 207

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           + V +N +I G++       A+K +++M    F P+ +TF  +L        +  G+QIH
Sbjct: 208 DSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIH 267

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
              +K     D FV  +L++ Y+++  ++ A+ +F++    D VSY  +ITGYA  G  +
Sbjct: 268 GLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYE 327

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
            +  LF  +  +  +F        T+LS  A   +L +G    +        S + V NA
Sbjct: 328 KSFDLFKRL--QGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNA 385

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           L+DMY+KC     A  +F ++  R+ + W  +I  Y     ++EAL +F++M + N+  +
Sbjct: 386 LVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGD 445

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
             TF S L A A L ++ LGK +H+ + +    L++V   + L+DMYA CG++K A +VF
Sbjct: 446 QATFASTLKASANLASVSLGKQLHSSVIR-LGLLSSVFSGSVLVDMYANCGSMKDAIEVF 504

Query: 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLD 453
             M  + +  WNA+IS  + +G A+   S F+ MI  GL PD ++F+ VL+AC+H GL++
Sbjct: 505 KEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVE 564

Query: 454 IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
               YFN+M Q YK+ P+ +HY  M+D+L R+G F+EAE L+  M  +PD  +W+S+L +
Sbjct: 565 KALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSVLNS 624

Query: 514 CRVHGRLELGESVAKHLLELEP-ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           CR+H   +L +  A  L +++   +  AYV +SN+YA AG+W++ A ++  + ++G+KKV
Sbjct: 625 CRIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKWENAAKVKKAMRERGVKKV 684

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
              S +E+   VH F   D+ HPQ++ I   ++ +  L++K G+ PDTS  L ++DEE K
Sbjct: 685 TAYSWVEIDHRVHVFTANDRTHPQTEQIRRKINSLVELMDKEGYKPDTSCTLQNVDEEMK 744

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
             +L +HSE+LAIA+ LI+T  G+ I I+KNLR C +CH+A K+ISKI  REI  RD +R
Sbjct: 745 IESLKYHSERLAIAFALINTPEGSPIIIMKNLRACVDCHAAIKVISKIVGREITVRDSSR 804

Query: 693 FHHFKDGNCSCNDYW 707
           FHHF+DG+CSC DYW
Sbjct: 805 FHHFRDGSCSCGDYW 819



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 125/456 (27%), Positives = 224/456 (49%), Gaps = 9/456 (1%)

Query: 79  DLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILK 138
           +L  A  +FE++   N+V W  +I G+S ++ P  A   Y  M  SG  P+  TF  +L 
Sbjct: 92  NLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLS 151

Query: 139 SCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVS 198
                + + E  QIH+H+++ G  +   V  SL++ Y +   L+ A  +F++   +D+VS
Sbjct: 152 GFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVS 211

Query: 199 YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           +  +ITGY   G+ ++A +LF  M +R  +F P+  T   +L        +  G  +  L
Sbjct: 212 FNVMITGYTKYGFREEALKLF--MQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGL 269

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
                   ++ V NAL+D YSK   +  A++LF+ + + D +S+N++I GY     Y+++
Sbjct: 270 AIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKS 329

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
             LF+++  ++ +  +  F ++L   A    L +G+  HA        ++ V +  +L+D
Sbjct: 330 FDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVT-TAVSEVQVGNALVD 388

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
           MYAKC   + A ++F  + Y+    W A+IS     G  ++AL +F  M  E +  D  T
Sbjct: 389 MYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQAT 448

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
           F   L A  +   + +G+Q  +++I+   +S        +VD+    G   +A  + K M
Sbjct: 449 FASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSG-SVLVDMYANCGSMKDAIEVFKEM 507

Query: 499 EMKPDAAI--WTSLLGACRVHGRLELGESVAKHLLE 532
              PD  I  W +L+ A   +G  E   S    ++E
Sbjct: 508 ---PDRNIVCWNALISAYSQNGDAEATFSSFADMIE 540



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 203/433 (46%), Gaps = 20/433 (4%)

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVH 168
           S  +V I    R++ +GF P    F F LK   + + I++ +Q+         +  P+ +
Sbjct: 25  SERIVDIPVDARIVKTGFDPEISRFNFKLKDLVRANQIAKARQL--------FDEMPYRN 76

Query: 169 TSLINM----YAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPI 224
           TS +NM    Y ++  L  AR +F     R+ VS+T +I GY+      +A  L+ EM  
Sbjct: 77  TSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMC- 135

Query: 225 REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
                 P+  T  T+LS      +L+    + S I   G  ++L V N+L+D Y K   L
Sbjct: 136 -RSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCL 194

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
             A  LF  +  +D +S+NVMI GYT     +EAL LF QM   + +P+  TF ++L   
Sbjct: 195 DIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMS 254

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
                +  G+ IH    K    + ++ +  +L+D Y+K   I  A+ +FD M      S+
Sbjct: 255 VGSEDVIFGQQIHGLAIKT-SYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSY 313

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
           N +I+G A +G+ +K+  LF R+ G      +  F  +LS       L +GRQ     + 
Sbjct: 314 NIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVV 373

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGE 524
              +S ++Q    +VD+  +   F++A  +   +  + ++  WT+++    ++ +    E
Sbjct: 374 TTAVS-EVQVGNALVDMYAKCEKFEDANRIFANLAYR-NSVPWTAIIS---IYVQKGFHE 428

Query: 525 SVAKHLLELEPEN 537
              K   E+  EN
Sbjct: 429 EALKMFKEMNREN 441


>gi|302823459|ref|XP_002993382.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
 gi|300138813|gb|EFJ05567.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
          Length = 655

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 244/664 (36%), Positives = 375/664 (56%), Gaps = 15/664 (2%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFG---DLSYALLVFETIREPNQVIWNNIIRGH 105
            H +II   L   +      +  C V  +G    +  A+  F  I E N+  +  ++  +
Sbjct: 2   THERIIDANLEQEK---ETFLGNCLVRAYGRCKSIDDAVAAFSEIAEKNEYSYAIMMGAY 58

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA--ISEGKQIHAHVLKLGLES 163
             +     A++ + + I      N  T+  +LKSCA +    + +GK+IH H +  G  +
Sbjct: 59  QENDLHKKALQLFKKSINEELQQNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGT 118

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
           D  V  SLI+MYA+ G  + A  VF K   ++ +SYT++I  Y       +A +L+ +M 
Sbjct: 119 DLVVQNSLIHMYAKCGSFKFAAGVFEKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKM- 177

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
              E  +P+       L+ C    ++  G  +   +  H   + +  +NAL+ MY + G 
Sbjct: 178 -LSEGIMPDIYAYAAALAVCP---TIREGEAIHVKLGNHERRTPV-CSNALVGMYGRFGR 232

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           +  A+ +F+ I  +D+ S+N MI  +    D  +A+ L+ +M   N+EPN  TF SVL A
Sbjct: 233 IASAKWVFDGIRYKDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTFTSVLDA 292

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
           C+ LGAL  GK IH  +    Q   +V+  T+L++MYAKCG+   A  VF+  G K + +
Sbjct: 293 CSKLGALTEGKEIHKKVKGGDQP-TDVAYNTALVNMYAKCGSTHEARAVFNDCGLKNVFT 351

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
           W +++S  +  G++   L  + RM  EG+ PDD+TF  + +AC+H+GL D G  YF AM 
Sbjct: 352 WTSLMSAYSQPGQSQYRLEAYQRMNCEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAMR 411

Query: 464 QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELG 523
           +D+ I P   HY CM+DLLGR G   EAE L++TM   PD   WT LL AC+V+G L++G
Sbjct: 412 EDHWIVPLQPHYTCMIDLLGRVGRLREAEELVRTMPYSPDVVTWTILLSACKVYGDLKIG 471

Query: 524 ESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSV 583
               K + EL P + G Y+L+ NMYA AG+W DVA ++  +  +G+ K PG S IE    
Sbjct: 472 ARAYKRITELNPPDSGPYLLMGNMYAKAGKWADVAEVKKMIKQRGLAKPPGKSMIEAQRR 531

Query: 584 VHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKL 643
           +HEF+ GD  HP ++ I   L E+   L  +G+ PDT EVL D++EE K   L  HSE++
Sbjct: 532 IHEFVCGDTAHPLNQEIRARLQEVHEQLSHAGYEPDTKEVLVDVNEEVKPELLLFHSERM 591

Query: 644 AIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSC 703
           A+  GL+++  G T+ IVKNLR+C +CHS  KL+SK+ +R+++ RD +RFH F+ G+CSC
Sbjct: 592 ALGLGLLTSDAGATLHIVKNLRICPDCHSFFKLVSKMLHRKVLVRDSHRFHIFQRGSCSC 651

Query: 704 NDYW 707
            DYW
Sbjct: 652 GDYW 655


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/507 (45%), Positives = 325/507 (64%), Gaps = 6/507 (1%)

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
           GY     +  + +LF  M   +   V +E+  +   SA A +    +   + +LI   G 
Sbjct: 170 GYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGF 229

Query: 265 GSNLHVTNALIDMYSKCG--DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
             N  V N ++D Y+K G  DL  AR +F+++E RDV+SWN MI  Y       EA+ L+
Sbjct: 230 ERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQNGMSAEAIGLY 288

Query: 323 RQMLQ--SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMY 380
            +ML     I+ N V   +VL ACA+ GA+  GK IH  + +   +  NV + TS++DMY
Sbjct: 289 SKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLE-ENVYVGTSIVDMY 347

Query: 381 AKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFV 440
           +KCG ++ A + F  +  K + SW+AMI+G  MHG+  +AL +F+ M   GL+P+ ITF+
Sbjct: 348 SKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFI 407

Query: 441 GVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEM 500
            VL+AC+HAGLLD GR ++NAM Q++ I   ++HYGCMVDLLGRAG  DEA +L+K M++
Sbjct: 408 SVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKV 467

Query: 501 KPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATI 560
           KPDAAIW +LL ACR+H  +EL E   K L EL+  N G YVLLSN+YA A  W DV  I
Sbjct: 468 KPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERI 527

Query: 561 RTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDT 620
           R  +  + ++K PG SS E+   ++ F VGDK HPQ   IY  L+++   ++++G+VP+T
Sbjct: 528 RLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNT 587

Query: 621 SEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKI 680
             VL+D+DEE KE AL  HSEKLA+A+ L+++ P + I I+KNLRVC +CH+A K I+KI
Sbjct: 588 GSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKI 647

Query: 681 FNREIIARDRNRFHHFKDGNCSCNDYW 707
             REII RD  RFHHFKDG CSC DYW
Sbjct: 648 TEREIIIRDLQRFHHFKDGLCSCRDYW 674



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 147/283 (51%), Gaps = 7/283 (2%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           +H+ I K G       ++ +++  A     DL  A  VF+T+ E + V WN++I  ++ +
Sbjct: 220 LHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQN 278

Query: 109 SSPVVAIKFYVRM--ILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
                AI  Y +M  +  G   N      +L +CA   AI  GK+IH  V+++GLE + +
Sbjct: 279 GMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVY 338

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V TS+++MY++ G +E A   F K   ++ +S++A+ITGY   G   +A ++F EM  + 
Sbjct: 339 VGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEM--KR 396

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGN-WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
               PN  T ++VL+AC+H G L+ G  W  ++ +  G+ + +     ++D+  + G L 
Sbjct: 397 SGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLD 456

Query: 286 KARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
           +A  L + ++ K D   W  ++       + + A M  +++ +
Sbjct: 457 EAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFE 499



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 89/176 (50%), Gaps = 7/176 (3%)

Query: 35  ALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           A+L  C +   +Q  K++H+Q+++ GL    +  + ++++   S  G +  A   F  I+
Sbjct: 307 AVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDM--YSKCGRVEMASRAFRKIK 364

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           E N + W+ +I G+ +      A++ +  M  SG  PN  TF  +L +C+    + EG+ 
Sbjct: 365 EKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRY 424

Query: 152 -IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-DAVSYTALITG 205
             +A   + G+E+    +  ++++  + G L+ A  +  +  ++ DA  + AL++ 
Sbjct: 425 WYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSA 480


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/562 (40%), Positives = 354/562 (62%), Gaps = 14/562 (2%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLI-EICAVSPFGDLSYALLVFETIREPN 94
           LL+ C+++ ++ ++H+ ++  G        +KLI   C ++P  D  YA  +F+ + + +
Sbjct: 35  LLNCCSSLPDLSRIHALVVTNGCGQNLLLSTKLIITACCLAPTMD--YARKMFDQMPKRD 92

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
             +WN +IRG++ +     A+  Y  M  +G  P+ YTFPF+++SCA +SA+ EGK++H 
Sbjct: 93  VFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHC 152

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
           +++K G +SD FV +SL+ MY+Q+GE     LVF +  +R+ VS+TA+I GY    Y  +
Sbjct: 153 NIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKE 212

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL----GSNLHV 270
              +F EM        PN  T+V+VL ACA +  L LG     LI G+G+      ++ +
Sbjct: 213 GLGVFREMV--GSGTQPNAVTLVSVLPACAGLEFLNLGK----LIHGYGIKLGVDPDVSL 266

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
           TNALI +Y KCG++  AR LF+ +  ++++SWN MI  Y   +    A+ LFR+M    +
Sbjct: 267 TNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKV 326

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
           + + +T +SV+ ACA LGAL+ G+W+H  + +   ++N VS+  +LIDMYAKCGNI  A 
Sbjct: 327 DFDYITMVSVISACASLGALNTGRWMHELVKRKGLEIN-VSITNALIDMYAKCGNIDLAR 385

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
           +VF+ +  +++ SW +MI   A HG  + AL LFSRM  EG++P+  TF  V +AC H+G
Sbjct: 386 EVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSG 445

Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L++ GR++F +M++DY I P ++H  CMVDLLGRAG   EA   +  M ++PD ++W +L
Sbjct: 446 LVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGAL 505

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
           LG+CR+H  LEL E VA+ L  L+P+    YVL+SN+YA AGRW+D A +R  + ++ +K
Sbjct: 506 LGSCRIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEERELK 565

Query: 571 KVPGCSSIEVGSVVHEFLVGDK 592
           K+PG S +EV    H FL G +
Sbjct: 566 KIPGHSLVEVNRRFHTFLSGSR 587


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 250/671 (37%), Positives = 378/671 (56%), Gaps = 9/671 (1%)

Query: 37  LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQV 96
           L  CT    +  +H   IK GL    F  + L++  A    G L+ A  VF  + + + V
Sbjct: 149 LPGCT----VPSLHPFAIKFGLDTHVFVCNTLLD--AYCKHGLLAAARRVFLEMHDKDAV 202

Query: 97  IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHV 156
            +N ++ G S       A++ +  M  +G     +TF  IL   A ++ +  G Q+HA V
Sbjct: 203 TYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALV 262

Query: 157 LKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDAR 216
           L+     + FV+ SL++ Y++   L+  R +F++   RD VSY  +I  YA         
Sbjct: 263 LRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVL 322

Query: 217 QLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALID 276
           +LF EM  ++  F        T+LS    +  + +G  + + +   GL S   + NALID
Sbjct: 323 RLFREM--QKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALID 380

Query: 277 MYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVT 336
           MYSKCG L  A+  F +  ++  ISW  +I GY     ++EAL LF  M ++ + P+  T
Sbjct: 381 MYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRAT 440

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
           F S++ A + L  + LG+ +H+Y+ ++  K ++V   + L+DMYAKCG +  A + FD M
Sbjct: 441 FSSIIKASSSLAMIGLGRQLHSYLIRSGYK-SSVFSGSVLVDMYAKCGCLDEALRTFDEM 499

Query: 397 GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR 456
             +   SWNA+IS  A +G+A  A+ +F  M+  G  PD +TF+ VL+AC+H GL D   
Sbjct: 500 PERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECM 559

Query: 457 QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRV 516
           +YF+ M   Y ISP  +HY C++D LGR G F + + +L  M  K D  IWTS+L +CR+
Sbjct: 560 KYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRI 619

Query: 517 HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCS 576
           HG  EL    A  L  +EP +   YV+LSN+YA AG+W+D A ++  + D+G++K  G S
Sbjct: 620 HGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYS 679

Query: 577 SIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGAL 636
            +E+   ++ F   D   P    I + LD +   ++K G+ PD +  L+ +D E K  +L
Sbjct: 680 WVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESL 739

Query: 637 SHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHF 696
            +HSE+LAIA+ L++T  GT IRI+KNL  C +CH+  K+ISKI NR+II RD  RFHHF
Sbjct: 740 KYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHF 799

Query: 697 KDGNCSCNDYW 707
           KDG CSC DYW
Sbjct: 800 KDGVCSCGDYW 810



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 141/465 (30%), Positives = 233/465 (50%), Gaps = 22/465 (4%)

Query: 59  HNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFY 118
           H   F+L+ ++   A S  GDL  A  +F +    N   W  ++R H+ +     A+  +
Sbjct: 71  HKNIFSLNLILS--AYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLF 128

Query: 119 VRMILSGFVPNTYTFPFILK--SCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYA 176
             M+  G +P+  T   +L    C   S       +H   +K GL++  FV  +L++ Y 
Sbjct: 129 RAMLGEGVIPDRVTVTTVLNLPGCTVPS-------LHPFAIKFGLDTHVFVCNTLLDAYC 181

Query: 177 QNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTV 236
           ++G L +AR VF +   +DAV+Y A++ G +  G    A QLF  M  R         T 
Sbjct: 182 KHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAM--RRAGIPATHFTF 239

Query: 237 VTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK 296
            ++L+  A M  L LG+ V +L+       N+ V N+L+D YSKC  L   R LF+ + +
Sbjct: 240 SSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPE 299

Query: 297 RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
           RD +S+NV+I  Y         L LFR+M +   +   + + ++L     L  + +GK I
Sbjct: 300 RDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQI 359

Query: 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGK 416
           HA +        ++ L  +LIDMY+KCG + AA+  F     K+  SW A+I+G   +G+
Sbjct: 360 HAQLVLLGLASEDL-LGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQ 418

Query: 417 ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD-YKISPKLQHY 475
            ++AL LFS M   GL+PD  TF  ++ A +   ++ +GRQ  + +I+  YK S  +   
Sbjct: 419 HEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSS--VFSG 476

Query: 476 GCMVDLLGRAGLFDEAEALLKTMEMKPD--AAIWTSLLGACRVHG 518
             +VD+  + G  DEA   L+T +  P+  +  W +++ A   +G
Sbjct: 477 SVLVDMYAKCGCLDEA---LRTFDEMPERNSISWNAVISAYAHYG 518


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 248/609 (40%), Positives = 362/609 (59%), Gaps = 24/609 (3%)

Query: 100 NIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKL 159
           + +R   L S+  V  K  VR         T T+  +L    K++    GK   AH L  
Sbjct: 82  SFVRACDLESARNVFEKMSVR--------TTVTWNTMLSGYTKVA----GKVKEAHELFD 129

Query: 160 GL-ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQL 218
            + E D   +  ++  Y ++  +++A   FNK  ++D  S+  LI+G+A  G +  A  L
Sbjct: 130 KIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDL 189

Query: 219 FDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMY 278
           F  MP  E+N V    +   ++S     G LE       L +  G+ S + V  A++  Y
Sbjct: 190 FSVMP--EKNGV----SWSAMISGYVEHGDLEAAE---ELYKNVGMKSVV-VETAMLTGY 239

Query: 279 SKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
            K G +  A  +F+ +  +++++WN MI GY      ++ L +F+ M++S + PN ++  
Sbjct: 240 MKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLS 299

Query: 339 SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
           SVL  C+ L AL LG+ +H  + K+    +  +  TSLI MY KCG++ +A ++F  M  
Sbjct: 300 SVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTAC-TSLISMYCKCGDLDSAWKLFLEMPR 358

Query: 399 KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQY 458
           K + +WNAMISG A HG   KAL LF +M    ++PD ITFV V+ ACNHAG +D+G QY
Sbjct: 359 KDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQY 418

Query: 459 FNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           F +M +++ I  K  HY C++DLLGRAG  DEA +L+K M   P AAI+ +LLGACR+H 
Sbjct: 419 FKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHK 478

Query: 519 RLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSI 578
            L+L E  A++LL L+P +   YV L+N+YA   +WD VA +R  + +  + K+PG S I
Sbjct: 479 NLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWI 538

Query: 579 EVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSH 638
           E+ SV HEF   D++HP+   I++ L+E+D  ++ +G+VPD    L+D++EE KE  L  
Sbjct: 539 EIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLW 598

Query: 639 HSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKD 698
           HSEKLAIA+GL+ T PGT IR+ KNLRVCG+CH A K IS I  REII RD  RFHHF++
Sbjct: 599 HSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRN 658

Query: 699 GNCSCNDYW 707
           G CSC DYW
Sbjct: 659 GFCSCGDYW 667



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 114/219 (52%), Gaps = 3/219 (1%)

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
           FG +  A  +F+ +   N V WN++I G+  +      +K +  MI S   PN  +   +
Sbjct: 242 FGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSV 301

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L  C+ +SA+  G+Q+H  V K  L  D    TSLI+MY + G+L+SA  +F +   +D 
Sbjct: 302 LLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDV 361

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWV 255
           +++ A+I+GYA  G    A  LFD+M  R     P+  T V V+ AC H G ++LG  + 
Sbjct: 362 ITWNAMISGYAQHGAGRKALHLFDKM--RNGTMKPDWITFVAVILACNHAGFVDLGVQYF 419

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
            S+ +  G+ +       +ID+  + G L +A  L + +
Sbjct: 420 KSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEM 458



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 134/327 (40%), Gaps = 72/327 (22%)

Query: 258 LIEGHGLGSNLHVT--------NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309
           L+  + +  NLHV         N  I  + +  DL  AR++FE +  R  ++WN M+ GY
Sbjct: 55  LVSPNNVTPNLHVDTASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGY 114

Query: 310 THTS-DYKEALMLFRQMLQSNIEPNDVTF----------LSVLPACAYLGAL---DLGKW 355
           T  +   KEA  LF ++     EP+ V++            V  A A+   +   D+  W
Sbjct: 115 TKVAGKVKEAHELFDKI----PEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASW 170

Query: 356 ----------------------------------IHAYIDKNHQK----------LNNVS 371
                                             I  Y++    +          + +V 
Sbjct: 171 NTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVV 230

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
           + T+++  Y K G ++ AE++F  M  K L +WN+MI+G   + +A+  L +F  MI   
Sbjct: 231 VETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESR 290

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
           ++P+ ++   VL  C++   L +GRQ  + ++    +S        ++ +  + G  D A
Sbjct: 291 VRPNPLSLSSVLLGCSNLSALPLGRQ-MHQLVSKSPLSKDTTACTSLISMYCKCGDLDSA 349

Query: 492 EALLKTMEMKPDAAIWTSLLGACRVHG 518
             L   M  K D   W +++     HG
Sbjct: 350 WKLFLEMPRK-DVITWNAMISGYAQHG 375


>gi|302765565|ref|XP_002966203.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
 gi|300165623|gb|EFJ32230.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
          Length = 916

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 255/695 (36%), Positives = 387/695 (55%), Gaps = 21/695 (3%)

Query: 27  LLQNQPS-LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSY 82
           LL N+ S +A+LS C +  ++   + +H+++ + G        + L+ +      G +  
Sbjct: 229 LLPNRASFVAILSSCGDHSSLPLARSIHARVEELGFLGDVVVATALVTM--YGRCGSVDE 286

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           ++ VFE +   N V WN +I   +       A   Y RM   GF PN  TF   LK+   
Sbjct: 287 SIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACS 346

Query: 143 ISA--ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYT 200
            S+  + E   +H  +   GLE D  V T+L+ MY   G ++ AR  F+    ++ VS+ 
Sbjct: 347 SSSQDLGESAALHGWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWN 406

Query: 201 ALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE 260
           A++T Y   G   +A +LF  M  + ++  PN+ + + VL  C  +        + + + 
Sbjct: 407 AMLTAYGDNGRAREAMELFAAM--KRQSLAPNKVSYLAVLGCCEDVSE---ARSIHAEVV 461

Query: 261 GHGL-GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEAL 319
           G+GL      + N ++ M+++ G L +A   F++   +D +SWN  +   +   D   A+
Sbjct: 462 GNGLFAQESSIANGVVRMFARSGSLEEAMAAFDATVVKDSVSWNTKVAALSAREDLHGAI 521

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
             F  M      P+  T +SV+  CA LG L+LG+ I   +    +   +V + +++++M
Sbjct: 522 TAFYTMQHEGFRPDKFTLVSVVDVCADLGTLELGRSIQQQLSAAIEVERDVVVESAVMNM 581

Query: 380 YAKCGN-IKAAEQVFDGM--GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG-LQPD 435
            AKCG+ +   E++F  M    K L +WN MI+  A HG   KAL LF  M     ++PD
Sbjct: 582 VAKCGSSVDECERLFARMPDDRKDLVAWNTMIAAYAQHGHGRKALKLFRIMQQRSSVRPD 641

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK-LQHYGCMVDLLGRAGLFDEAEAL 494
             TFV VLS C+HAGL++ G   F    +   I  + ++HY C+VD+LGR G   EAE  
Sbjct: 642 SSTFVSVLSGCSHAGLVEDGIHCFFLAREVLGIEQQPVEHYACLVDVLGRMGYLREAEDF 701

Query: 495 LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554
           ++ M +  D+ +WTSLLGAC  +G LE GE  A+  +EL   +   YV+LSN+YA AGRW
Sbjct: 702 IRKMPLPADSVVWTSLLGACSSYGDLEGGERAARAFIELYRSDSVGYVVLSNIYAAAGRW 761

Query: 555 DDVATIRTRLNDKGMKK-VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEK 613
           +D   +R  + ++ +KK  PG SSI V + VHEF   D+ HPQS  IY  L+ +  L+ +
Sbjct: 762 EDSIRVREDMAERRVKKRAPGKSSIVVKNRVHEFFARDRSHPQSDEIYAELERLKGLIRE 821

Query: 614 SGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSA 673
           +G+VPDT  VL+D++EE KE  L +HSEKLAIA+GLIS     +IR++KNLRVC +CH+A
Sbjct: 822 AGYVPDTRLVLHDVEEEQKEQLLWYHSEKLAIAFGLISVPHRHSIRVIKNLRVCKDCHTA 881

Query: 674 TKLISKIFNREIIARDRNRFHHF-KDGNCSCNDYW 707
           TK I+++  REI  RD NRFHHF KDG CSC DYW
Sbjct: 882 TKFIARVTQREIAVRDCNRFHHFGKDGECSCGDYW 916



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 140/524 (26%), Positives = 242/524 (46%), Gaps = 26/524 (4%)

Query: 36  LLSKC---TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LL +C    ++   +Q+H QI+K GL       + L+++   S    L  A   F  +R 
Sbjct: 30  LLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQM--YSKCRSLDDANAAFSALRS 87

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV---PNTYTFPFILKSCAK------I 143
                WN +I   +  SSP      Y RM L       PN  T   +L + A        
Sbjct: 88  RGIATWNTLI---AAQSSPAAVFDLYTRMKLEERAENRPNRLTIIAVLGAIASGDPSSSS 144

Query: 144 SAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALI 203
           S+ ++ + +H  +    LE D FV T+L++ Y + G +ESA  VF++  + D + + A I
Sbjct: 145 SSRAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLICWNAAI 204

Query: 204 TGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG 263
              A      D R L     +  E  +PN ++ V +LS+C    SL L   + + +E  G
Sbjct: 205 MACAGNDERPD-RALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEELG 263

Query: 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFR 323
              ++ V  AL+ MY +CG + ++  +FE++  R+ +SWN MI  +        A  ++ 
Sbjct: 264 FLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYW 323

Query: 324 QMLQSNIEPNDVTFLSVLPACAYLGALDLGK--WIHAYIDKNHQKLNNVSLWTSLIDMYA 381
           +M Q    PN +TF++ L A     + DLG+   +H +I     +  +V + T+L+ MY 
Sbjct: 324 RMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLE-GDVMVGTALVTMYG 382

Query: 382 KCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVG 441
             G I  A   FD +  K + SWNAM++    +G+A +A+ LF+ M  + L P+ ++++ 
Sbjct: 383 STGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLA 442

Query: 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK 501
           VL  C     +   R     ++ +   + +      +V +  R+G  +EA A      +K
Sbjct: 443 VLGCCED---VSEARSIHAEVVGNGLFAQESSIANGVVRMFARSGSLEEAMAAFDATVVK 499

Query: 502 PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545
            D+  W + + A      L  G   A + ++ E   P  + L+S
Sbjct: 500 -DSVSWNTKVAALSAREDLH-GAITAFYTMQHEGFRPDKFTLVS 541



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 115/398 (28%), Positives = 190/398 (47%), Gaps = 16/398 (4%)

Query: 132 TFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKS 191
           T   +L+ C   + +++G+Q+H  ++K GL  +  +   L+ MY++   L+ A   F+  
Sbjct: 26  TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSAL 85

Query: 192 SLRDAVSYTALITGYASRGYLDDARQLFDEMPI--REENFVPNESTVVTVLSACAH---- 245
             R   ++  LI   +S   + D   L+  M +  R EN  PN  T++ VL A A     
Sbjct: 86  RSRGIATWNTLIAAQSSPAAVFD---LYTRMKLEERAENR-PNRLTIIAVLGAIASGDPS 141

Query: 246 --MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN 303
               S      V   I G  L  +L V  AL+D Y KCG +  A ++F  I+  D+I WN
Sbjct: 142 SSSSSRAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLICWN 201

Query: 304 VMIGGYTHTSDYKE-ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
             I       +  + AL+L R+M    + PN  +F+++L +C    +L L + IHA +++
Sbjct: 202 AAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEE 261

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALS 422
               L +V + T+L+ MY +CG++  +  VF+ M  +   SWNAMI+  A  G    A +
Sbjct: 262 -LGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFA 320

Query: 423 LFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ-YFNAMIQDYKISPKLQHYGCMVDL 481
           ++ RM  EG +P+ ITFV  L A   +   D+G     +  I    +   +     +V +
Sbjct: 321 IYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVTM 380

Query: 482 LGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
            G  G  D A A    +  K +   W ++L A   +GR
Sbjct: 381 YGSTGAIDRARAAFDAIPAK-NIVSWNAMLTAYGDNGR 417



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 139/294 (47%), Gaps = 11/294 (3%)

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           ++++P E T+  +L  C     L  G  +   I   GL  N  + N L+ MYSKC  L  
Sbjct: 19  DDYIPIE-TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDD 77

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA- 345
           A   F ++  R + +WN +I   +  +   +     +   ++   PN +T ++VL A A 
Sbjct: 78  ANAAFSALRSRGIATWNTLIAAQSSPAAVFDLYTRMKLEERAENRPNRLTIIAVLGAIAS 137

Query: 346 -----YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT 400
                   +    + +H  I +      ++ + T+L+D Y KCG +++A +VF  +    
Sbjct: 138 GDPSSSSSSRAQARIVHDDI-RGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPD 196

Query: 401 LASWNAMISGLAMHG-KADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF 459
           L  WNA I   A +  + D+AL L  RM  EGL P+  +FV +LS+C     L + R   
Sbjct: 197 LICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARS-I 255

Query: 460 NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
           +A +++      +     +V + GR G  DE+ A+ + M ++   + W +++ A
Sbjct: 256 HARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVS-WNAMIAA 308


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/633 (37%), Positives = 369/633 (58%), Gaps = 8/633 (1%)

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKS 139
           L  A  +F+ +   + V +N ++ G+  S   +  +K +  M+ S + PN Y F  +L +
Sbjct: 71  LRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQPNEYVFTTVLSA 130

Query: 140 CAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF-----NKSSLR 194
           CA    + EG Q H  + K GL    FV +SL++MY++   ++ A  V      N  +  
Sbjct: 131 CAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEHGNIDNDN 190

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
           DA  Y +++      G L +A ++   M   +E  V +  T V+V+  C  +  L LG  
Sbjct: 191 DAFCYNSVLNALVESGRLGEAVEVLGRMV--DEGVVWDSVTYVSVMGLCGQIRDLGLGLQ 248

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           V + +   GL  ++ V + L+DM+ KCGD++ AR +F+ ++ R+V+ W  ++  Y    +
Sbjct: 249 VHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGE 308

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
           ++E L L   M +     N+ TF  +L A A + AL  G  +HA ++K   K N V +  
Sbjct: 309 FEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKLGIK-NRVIVGN 367

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
           +LI+MY+KCG I ++  VF  M  + + +WNAMI G + HG   +AL LF  M+  G  P
Sbjct: 368 ALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQHGLGKQALLLFQDMLSAGECP 427

Query: 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494
           + +TFVGVLSAC H  L++ G  Y N +++ +K+ P L+HY C+V +L RAG+ +EAE  
Sbjct: 428 NHVTFVGVLSACAHLALVNEGFYYLNQLMKHFKVEPGLEHYTCVVAVLCRAGMLEEAENF 487

Query: 495 LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554
           ++T ++K D   W  LL AC +H    LG  +A+ +L+++P + G Y LLSNMYA A  W
Sbjct: 488 MRTTQVKWDVVAWRVLLNACNIHRNYNLGTKIAETILQMDPRDMGTYTLLSNMYAKARSW 547

Query: 555 DDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKS 614
           D V  IR  + ++ +KK PG S IE+ + VH F      HP+   IY  +  +  ++++ 
Sbjct: 548 DSVTMIRKMMRERNVKKEPGVSWIEIRNAVHVFSSDGSNHPECIQIYNKVQLLLEMIKQL 607

Query: 615 GFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSAT 674
           G+VP+   VL+D+++E KE  L++HSEKLAIAYGL+       IR++KNLR+C +CH+A 
Sbjct: 608 GYVPNIEAVLHDVEDEQKESYLNYHSEKLAIAYGLMKIPSPAPIRVIKNLRICEDCHTAV 667

Query: 675 KLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           KLISK+ NR II RD +RFHHF+DG C+C D+W
Sbjct: 668 KLISKVTNRLIIVRDASRFHHFRDGTCTCTDHW 700



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/391 (26%), Positives = 184/391 (47%), Gaps = 18/391 (4%)

Query: 141 AKISAISEGKQIHAHVLKLGLESDPFVH--------TSLINMYAQNGELESARLVFNKSS 192
           A    ++ GK IH  +L     S    +         SLIN+Y +  +L  AR +F++ S
Sbjct: 23  ANTKNLNFGKSIHTQLLIRNQSSTHHSYREFNIIQLNSLINLYVKCSKLRLARYLFDEMS 82

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
           LR  VSY  L+ GY   G   +  +LF  M      + PNE    TVLSACAH G +  G
Sbjct: 83  LRSVVSYNVLMGGYLHSGEHLEVVKLFKNMV--SSLYQPNEYVFTTVLSACAHSGRVFEG 140

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-----KRDVISWNVMIG 307
                 +   GL  +  V ++L+ MYSKC  +  A  + ES         D   +N ++ 
Sbjct: 141 MQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEHGNIDNDNDAFCYNSVLN 200

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
               +    EA+ +  +M+   +  + VT++SV+  C  +  L LG  +HA + K     
Sbjct: 201 ALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQLLKGGLTF 260

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
            +V + + L+DM+ KCG++ +A +VFDG+  + +  W ++++    +G+ ++ L+L S M
Sbjct: 261 -DVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEFEETLNLLSCM 319

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
             EG   ++ TF  +L+A      L  G    +A ++   I  ++     ++++  + G 
Sbjct: 320 DREGTMSNEFTFAVLLNAFAGMAALRHG-DLLHARVEKLGIKNRVIVGNALINMYSKCGC 378

Query: 488 FDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
            D +  +   M  + D   W +++     HG
Sbjct: 379 IDSSYDVFFDMRNR-DIITWNAMICGYSQHG 408


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/524 (43%), Positives = 338/524 (64%), Gaps = 5/524 (0%)

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
           R +F++     A  Y +LI    + G    A  ++  M +R  +  PN  T+   L ACA
Sbjct: 129 RNLFDQIPDPTAFCYNSLIRALPAAGS-APALAVYRRM-LRAGSPRPNSFTLAFALKACA 186

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWN 303
            + +   G  + +     GL ++ +V   L+++Y+KC  +  AR +F+ +   +++++W+
Sbjct: 187 AVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWS 246

Query: 304 VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363
            M+ GY+      EAL LFR+M    +EP++VT +SV+ ACA  GALDLGKW+HAYID+ 
Sbjct: 247 AMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRK 306

Query: 364 HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSL 423
              ++ + L T+LIDMYAKCG I+ A  VFD M  K   +W+AMI G A+HG  + AL L
Sbjct: 307 GITVD-LELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGL 365

Query: 424 FSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLG 483
           FSRM+   ++P+++TF+GVLSAC H+GL++ GR+Y++ M Q+  I P +++YGCMVDLL 
Sbjct: 366 FSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIM-QNLGIKPSMENYGCMVDLLC 424

Query: 484 RAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVL 543
           R+GL D+A + +  M + P++ IW +LL AC+   R+++ ES  K LLELEP NP  YVL
Sbjct: 425 RSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYVL 484

Query: 544 LSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEM 603
           LSN+YA   +WD V+ +R ++  K +  + G SSIE+   +HEF+V D  HP+ + I  +
Sbjct: 485 LSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREIRLV 544

Query: 604 LDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKN 663
           L E+   + ++G  P T+ VL+D+ EE KE AL  HSE+LAIAYGL+ T+    IR+VKN
Sbjct: 545 LREMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVIRVVKN 604

Query: 664 LRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           LR C +CH   K+ISK +NREI+ RDR RFH F  G+CSC D+W
Sbjct: 605 LRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 648



 Score =  218 bits (556), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 142/485 (29%), Positives = 259/485 (53%), Gaps = 54/485 (11%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLH--NTQFALSKLIEICAVSPFGDLSYALL------ 85
           ++L+ +C  +  ++  H+ + +  L      FALSKL+  C  +P    + A        
Sbjct: 71  VSLVRRCPGLLALRSAHAHLTRLRLPRLTAAFALSKLLASCVSAPAPAAAQAAASSYARN 130

Query: 86  VFETIREPNQVIWNNIIRG-HSLSSSPVVAIKFYVRMILSGF-VPNTYTFPFILKSCAKI 143
           +F+ I +P    +N++IR   +  S+P +A+  Y RM+ +G   PN++T  F LK+CA +
Sbjct: 131 LFDQIPDPTAFCYNSLIRALPAAGSAPALAV--YRRMLRAGSPRPNSFTLAFALKACAAV 188

Query: 144 SAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN-KSSLRDAVSYTAL 202
            A  EG+Q+HA  L+ GL +  +V T L+N+YA+  ++  AR VF+  +  ++ V+++A+
Sbjct: 189 PAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAM 248

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
           ++GY+  G +++A  LF EM  +     P+E T+V+V+SACA  G+L+LG WV + I+  
Sbjct: 249 VSGYSRVGMVNEALGLFREM--QAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRK 306

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
           G+  +L ++ ALIDMY+KCG + +AR +F+++ ++D  +W+ MI G+      ++AL LF
Sbjct: 307 GITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLF 366

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
            +ML+  + PN+VTF+ VL ACA+ G ++ G+                  W+        
Sbjct: 367 SRMLELKVRPNNVTFIGVLSACAHSGLVEDGR----------------RYWS-------- 402

Query: 383 CGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVG 441
                    +   +G K ++ ++  M+  L   G  D A   +S +IG  + P+ + +  
Sbjct: 403 ---------IMQNLGIKPSMENYGCMVDLLCRSGLLDDA---YSFVIGMPVSPNSVIWRT 450

Query: 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK 501
           +L AC  +  +DI       +++    +P  ++Y  + +L      +D    L + M+ K
Sbjct: 451 LLVACKSSNRIDIAESATKRLLELEPHNP--ENYVLLSNLYASNSQWDRVSYLRRKMKGK 508

Query: 502 PDAAI 506
              AI
Sbjct: 509 NVTAI 513


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/524 (43%), Positives = 338/524 (64%), Gaps = 5/524 (0%)

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
           R +F++     A  Y +LI    + G    A  ++  M +R  +  PN  T+   L ACA
Sbjct: 80  RNLFDQIPDPTAFCYNSLIRALPAAGS-APALAVYRRM-LRAGSPRPNSFTLAFALKACA 137

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWN 303
            + +   G  + +     GL ++ +V   L+++Y+KC  +  AR +F+ +   +++++W+
Sbjct: 138 AVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWS 197

Query: 304 VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363
            M+ GY+      EAL LFR+M    +EP++VT +SV+ ACA  GALDLGKW+HAYID+ 
Sbjct: 198 AMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRK 257

Query: 364 HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSL 423
              ++ + L T+LIDMYAKCG I+ A  VFD M  K   +W+AMI G A+HG  + AL L
Sbjct: 258 GITVD-LELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGL 316

Query: 424 FSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLG 483
           FSRM+   ++P+++TF+GVLSAC H+GL++ GR+Y++ M Q+  I P +++YGCMVDLL 
Sbjct: 317 FSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIM-QNLGIKPSMENYGCMVDLLC 375

Query: 484 RAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVL 543
           R+GL D+A + +  M + P++ IW +LL AC+   R+++ ES  K LLELEP NP  YVL
Sbjct: 376 RSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYVL 435

Query: 544 LSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEM 603
           LSN+YA   +WD V+ +R ++  K +  + G SSIE+   +HEF+V D  HP+ + I  +
Sbjct: 436 LSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREIRLV 495

Query: 604 LDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKN 663
           L E+   + ++G  P T+ VL+D+ EE KE AL  HSE+LAIAYGL+ T+    IR+VKN
Sbjct: 496 LREMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVIRVVKN 555

Query: 664 LRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           LR C +CH   K+ISK +NREI+ RDR RFH F  G+CSC D+W
Sbjct: 556 LRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 599



 Score =  218 bits (556), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 142/485 (29%), Positives = 259/485 (53%), Gaps = 54/485 (11%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLH--NTQFALSKLIEICAVSPFGDLSYALL------ 85
           ++L+ +C  +  ++  H+ + +  L      FALSKL+  C  +P    + A        
Sbjct: 22  VSLVRRCPGLLALRSAHAHLTRLRLPRLTAAFALSKLLASCVSAPAPAAAQAAASSYARN 81

Query: 86  VFETIREPNQVIWNNIIRG-HSLSSSPVVAIKFYVRMILSGF-VPNTYTFPFILKSCAKI 143
           +F+ I +P    +N++IR   +  S+P +A+  Y RM+ +G   PN++T  F LK+CA +
Sbjct: 82  LFDQIPDPTAFCYNSLIRALPAAGSAPALAV--YRRMLRAGSPRPNSFTLAFALKACAAV 139

Query: 144 SAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN-KSSLRDAVSYTAL 202
            A  EG+Q+HA  L+ GL +  +V T L+N+YA+  ++  AR VF+  +  ++ V+++A+
Sbjct: 140 PAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAM 199

Query: 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
           ++GY+  G +++A  LF EM  +     P+E T+V+V+SACA  G+L+LG WV + I+  
Sbjct: 200 VSGYSRVGMVNEALGLFREM--QAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRK 257

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
           G+  +L ++ ALIDMY+KCG + +AR +F+++ ++D  +W+ MI G+      ++AL LF
Sbjct: 258 GITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLF 317

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
            +ML+  + PN+VTF+ VL ACA+ G ++ G+                  W+        
Sbjct: 318 SRMLELKVRPNNVTFIGVLSACAHSGLVEDGR----------------RYWS-------- 353

Query: 383 CGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVG 441
                    +   +G K ++ ++  M+  L   G  D A   +S +IG  + P+ + +  
Sbjct: 354 ---------IMQNLGIKPSMENYGCMVDLLCRSGLLDDA---YSFVIGMPVSPNSVIWRT 401

Query: 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK 501
           +L AC  +  +DI       +++    +P  ++Y  + +L      +D    L + M+ K
Sbjct: 402 LLVACKSSNRIDIAESATKRLLELEPHNP--ENYVLLSNLYASNSQWDRVSYLRRKMKGK 459

Query: 502 PDAAI 506
              AI
Sbjct: 460 NVTAI 464


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 253/716 (35%), Positives = 401/716 (56%), Gaps = 50/716 (6%)

Query: 37   LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQV 96
             S   N  N + +H+++IK G    +   + L+ + A S   +L  A  +FE I + +  
Sbjct: 298  FSDSMNYPNSEVLHAKLIKNGCVGIRG--NHLLNLYAKSQ--NLEQAHKMFEEIPQTDVF 353

Query: 97   IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCA-KISAISEGKQIHAH 155
             W  +I G +        +  + +M   G  PN +T   +LKSC+  ++    GK IH  
Sbjct: 354  SWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGW 413

Query: 156  VLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDA 215
            +L+ GL+ D  ++ S+++ Y +      A  +F   + +D VS+  +++ Y   G +  +
Sbjct: 414  ILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKS 473

Query: 216  RQLFDEMPIRE--------ENFVPN--ESTVVTVLSACAHMG------SLELGNWVCSLI 259
              LF ++P ++        +  + N  E   + +L      G      +  +   + S +
Sbjct: 474  VDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSL 533

Query: 260  EGHGLGSNLH-------------VTNALIDMYSKCGDLVKARDLFESIEKR--------- 297
               GLG  +H             V N+LIDMY KCG++ KA  +F+ + +          
Sbjct: 534  SVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEES 593

Query: 298  ------DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALD 351
                  + +SW+ M+ GY     +++AL  F  M+ S +E +  T  SV+ ACA  G L+
Sbjct: 594  CDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLE 653

Query: 352  LGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGL 411
            LG+ +H YI K    L +V L +S+IDMY KCG++  A  +F+    + +  W +MISG 
Sbjct: 654  LGRQVHGYIQKIGHGL-DVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGC 712

Query: 412  AMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK 471
            A+HG+  +A+ LF  MI EG+ P++++FVGVL+AC+HAGLL+ G +YF  M + Y I P 
Sbjct: 713  ALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPG 772

Query: 472  LQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLL 531
             +H+ CMVDL GRAG  +E +  +    +   +++W S L +CRVH  +E+G  V K LL
Sbjct: 773  AEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLL 832

Query: 532  ELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGD 591
            ELEP + G Y+L S++ A   RW++ A IR+ +  +G+KK P  S I++ + VH F++GD
Sbjct: 833  ELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVHSFVMGD 892

Query: 592  KVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLIS 651
            + HPQ   IY  LDE+   L++ G+  D + V+ D+++E ++  L +HSEKLAIAYG+IS
Sbjct: 893  RSHPQDTKIYSYLDELIGRLKEIGYSTDVTPVMQDVEQEQRQVLLGYHSEKLAIAYGIIS 952

Query: 652  TKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            T PGT IR++KNLRVC +CH+  K  S++  REII RD +RFHHFK G+CSC DYW
Sbjct: 953  TAPGTPIRVMKNLRVCIDCHNFIKYASELLGREIIIRDIHRFHHFKHGHCSCADYW 1008



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 213/451 (47%), Gaps = 61/451 (13%)

Query: 121 MILSGFVPNTYTFPFILKSCAKIS---AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ 177
           ++  GF  ++Y +P +    +  S        + +HA ++K G       H  L+N+YA+
Sbjct: 276 LLFLGFSLSSYFYPPLXYFSSTFSDSMNYPNSEVLHAKLIKNGCVGIRGNH--LLNLYAK 333

Query: 178 NGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVV 237
           +  LE A  +F +    D  S+T LI+G+A  G   D   LF +M  +++   PN+ T+ 
Sbjct: 334 SQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKM--QDQGVCPNQFTLS 391

Query: 238 TVLSACA-HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK 296
            VL +C+ ++    +G  +   I  +GL  +  + N+++D Y KC     A  LF  + +
Sbjct: 392 IVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAE 451

Query: 297 RDVISWNVMIGGYTHTSDYKEALMLFRQ-------------------------------M 325
           +D +SWN+M+  Y    D ++++ LFRQ                               M
Sbjct: 452 KDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKM 511

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
           + +    N +TF   L   + L  L LGK IH  + K    L++  +  SLIDMY KCG 
Sbjct: 512 VAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKV-GVLDDGFVRNSLIDMYCKCGE 570

Query: 386 IKAAEQVFDGMGYKT---------------LASWNAMISGLAMHGKADKALSLFSRMIGE 430
           ++ A  +F  +  ++                 SW++M+SG   +G+ + AL  FS MI  
Sbjct: 571 MEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICS 630

Query: 431 GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY--GCMVDLLGRAGLF 488
            ++ D  T   V+SAC  AG+L++GRQ  +  IQ  KI   L  +    ++D+  + G  
Sbjct: 631 QVEVDKFTLTSVVSACASAGVLELGRQ-VHGYIQ--KIGHGLDVFLGSSIIDMYVKCGSL 687

Query: 489 DEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
           ++A  +    + + +  +WTS++  C +HG+
Sbjct: 688 NDAWLIFNQAKDR-NVVLWTSMISGCALHGQ 717



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 152/293 (51%), Gaps = 20/293 (6%)

Query: 14  ILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICA 73
           +L+   ++ P +  L    +L L S  + +   KQ+H+Q++K G+ +  F  + LI++  
Sbjct: 507 LLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDM-- 564

Query: 74  VSPFGDLSYALLVFETIREPNQVI---------------WNNIIRGHSLSSSPVVAIKFY 118
               G++  A ++F+ + + + ++               W++++ G+  +     A+K +
Sbjct: 565 YCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTF 624

Query: 119 VRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN 178
             MI S    + +T   ++ +CA    +  G+Q+H ++ K+G   D F+ +S+I+MY + 
Sbjct: 625 SFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKC 684

Query: 179 GELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVT 238
           G L  A L+FN++  R+ V +T++I+G A  G   +A +LF+ M    E   PNE + V 
Sbjct: 685 GSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMI--NEGITPNEVSFVG 742

Query: 239 VLSACAHMGSLELGNWVCSLI-EGHGLGSNLHVTNALIDMYSKCGDLVKARDL 290
           VL+AC+H G LE G     L+ E +G+         ++D+Y + G L + ++ 
Sbjct: 743 VLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEF 795


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 253/689 (36%), Positives = 377/689 (54%), Gaps = 61/689 (8%)

Query: 71  ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNT 130
           +   S  G L  A  +F  I  P+   +N ++   ++SSS   A   +  M     V ++
Sbjct: 76  LAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMP----VRDS 131

Query: 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK 190
            T+  ++ S A    +S  +    H   L  E D      ++  Y +NG +E AR +FN 
Sbjct: 132 VTYNVMISSHANHGLVSLAR----HYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNS 187

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE------------------------ 226
            +  D +S+ AL++GY   G + +AR+LFD MP R+                        
Sbjct: 188 RTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF 247

Query: 227 -ENFVPNESTVVTVLSACAHMGSLELGNWVC-SLIEGHGLGSNLHVT------------- 271
               V +  T   V+S  A  G LE    V  ++ E + +  N  V              
Sbjct: 248 DAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKE 307

Query: 272 -------------NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318
                        N ++  Y++ G L +A+ +F+++ ++D +SW  M+  Y+     +E 
Sbjct: 308 LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEET 367

Query: 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378
           L LF +M +     N   F  VL  CA + AL+ G  +H  + +    +    +  +L+ 
Sbjct: 368 LQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVG-CFVGNALLA 426

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
           MY KCGN++ A   F+ M  + + SWN MI+G A HG   +AL +F  M     +PDDIT
Sbjct: 427 MYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDIT 486

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
            VGVL+AC+H+GL++ G  YF +M  D+ ++ K +HY CM+DLLGRAG   EA  L+K M
Sbjct: 487 LVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDM 546

Query: 499 EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVA 558
             +PD+ +W +LLGA R+H   ELG S A+ + ELEPEN G YVLLSN+YA +G+W D  
Sbjct: 547 PFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDAR 606

Query: 559 TIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVP 618
            +R  + ++G+KKVPG S IEV + VH F  GD VHP+ + IY  L+++D  ++K+G+V 
Sbjct: 607 KMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVS 666

Query: 619 DTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLIS 678
            T  VL+D++EE KE  L +HSEKLA+AYG+++  PG  IR++KNLRVCG+CH+A K IS
Sbjct: 667 ATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYIS 726

Query: 679 KIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            I  R I+ RD NRFHHF+ G+CSC DYW
Sbjct: 727 AIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 185/449 (41%), Gaps = 85/449 (18%)

Query: 134 PFILKSCAKISA-ISEGKQIHAHVLKLGL-ESDPFVHTSLINMYAQNGELESARLVFNKS 191
           P +++S   I+A +  G+   A  L   +       + +++  Y+ NG L  A  +F   
Sbjct: 36  PEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAI 95

Query: 192 SLRDAVSYTALITGYASRGYLDDARQLFDEMPIREE-----------------------N 228
              D  SY  L+   A    L DAR LFDEMP+R+                        +
Sbjct: 96  PRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFD 155

Query: 229 FVPNESTVV--TVLSACAHMGSLELGNWVCSLIEGHGLGS-----NLHVTNALIDMYSKC 281
             P +  V    +L+A    G +E         E  GL +     ++   NAL+  Y + 
Sbjct: 156 LAPEKDAVSWNGMLAAYVRNGRVE---------EARGLFNSRTEWDVISWNALMSGYVQW 206

Query: 282 GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
           G + +AR+LF+ +  RDV+SWN+M+ GY    D  EA  LF      ++     T+ +V+
Sbjct: 207 GKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVV 262

Query: 342 PACAYLGALDLGK-------------W---IHAYIDK----------NHQKLNNVSLWTS 375
              A  G L+  +             W   + AYI +          N     NV+ W +
Sbjct: 263 SGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNT 322

Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435
           ++  YA+ G ++ A+ VFD M  K   SW AM++  +  G +++ L LF  M   G   +
Sbjct: 323 MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVN 382

Query: 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQ-DYKISPKLQHYGCMVD-----LLGRAGLFD 489
              F  VLS C     L+ G Q    +I+  Y +       GC V      +  + G  +
Sbjct: 383 RSAFACVLSTCADIAALECGMQLHGRLIRAGYGV-------GCFVGNALLAMYFKCGNME 435

Query: 490 EAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           +A    + ME + D   W +++     HG
Sbjct: 436 DARNAFEEMEER-DVVSWNTMIAGYARHG 463



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 119/282 (42%), Gaps = 42/282 (14%)

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           NA++  YS  G L  A  LF +I + D  S+N ++     +S   +A  LF +M   +  
Sbjct: 73  NAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRD-- 130

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
              VT+  ++ + A  G + L +    Y D   +K  +   W  ++  Y + G ++ A  
Sbjct: 131 --SVTYNVMISSHANHGLVSLAR---HYFDLAPEK--DAVSWNGMLAAYVRNGRVEEARG 183

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP----------------- 434
           +F+      + SWNA++SG    GK  +A  LF RM G  +                   
Sbjct: 184 LFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEA 243

Query: 435 ----------DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484
                     D  T+  V+S     G+L+  R+ F+AM +   +S     +  MV    +
Sbjct: 244 RRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVS-----WNAMVAAYIQ 298

Query: 485 AGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
             + DEA+ L   M  + + A W ++L      G LE  ++V
Sbjct: 299 RRMMDEAKELFNMMPCR-NVASWNTMLTGYAQAGMLEEAKAV 339



 Score = 45.4 bits (106), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 10/145 (6%)

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           I  + + G +  AE++F  M  ++ +++NAM++G + +G+   A SLF  +     +PD+
Sbjct: 45  ITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP----RPDN 100

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
            ++  +L A   +  L   R  F+ M     ++     Y  M+      GL   A     
Sbjct: 101 YSYNTLLHALAVSSSLADARGLFDEMPVRDSVT-----YNVMISSHANHGLVSLARHYFD 155

Query: 497 TMEMKPDAAIWTSLLGACRVHGRLE 521
               K DA  W  +L A   +GR+E
Sbjct: 156 LAPEK-DAVSWNGMLAAYVRNGRVE 179


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 252/683 (36%), Positives = 389/683 (56%), Gaps = 21/683 (3%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L L SKC  +   ++V        +    F+ + LI   A   + ++++ L  F+ + +P
Sbjct: 50  LLLYSKCRRLSAARRVFDHTHDCNV----FSFNTLISAYAKESYVEVAHQL--FDEMPQP 103

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG--KQ 151
           + V +N +I  ++       A + ++ M  +    + +T   I+ +C     I+ G  +Q
Sbjct: 104 DSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACG----INVGLIRQ 159

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN-KSSLRDAVSYTALITGYASRG 210
           +HA  +  GL+S   V  +LI  Y++NG L+ AR +F+  S  RD VS+ +++  Y    
Sbjct: 160 LHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHR 219

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
               A +L+ EM +R    + +  T+ +VL+A  ++  L  G    + +   G   N HV
Sbjct: 220 EGSKALELYLEMTVR--GLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHV 277

Query: 271 TNALIDMYSKCGD-LVKARDLFESIEKRDVISWNVMIGGYTHTSDYK-EALMLFRQMLQS 328
            + LID+YSKCG  ++  R +F+ I   D++ WN MI GY+   D   EAL  FRQ+   
Sbjct: 278 GSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVV 337

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
              P+D + + V+ AC+ + +   G+ +H    K     N +S+  +LI MY+KCGN++ 
Sbjct: 338 GHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRD 397

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A+ +FD M      S+N+MI+G A HG   ++L LF RM+  G  P +ITF+ VL+AC H
Sbjct: 398 AKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAH 457

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
            G ++ G+ YFN M Q + I P+  H+ CM+DLLGRAG   EAE L++T+   P    W+
Sbjct: 458 TGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWS 517

Query: 509 SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568
           +LLGACR+HG +EL    A  LL+L+P N   YV+L+N+Y+  GR  D A++R  + D+G
Sbjct: 518 ALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRG 577

Query: 569 MKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
           +KK PGCS IEV   +H F+  D  HP  K I E L+E+   ++K G+ P+    L   D
Sbjct: 578 VKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSALVGGD 637

Query: 629 EE-WK---EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNRE 684
           +  W+   E  L HHSEKLA+++GL+ST+ G  I + KNLR+C +CH+A K IS++  RE
Sbjct: 638 DRVWQREEELRLGHHSEKLAVSFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVVKRE 697

Query: 685 IIARDRNRFHHFKDGNCSCNDYW 707
           I  RD +RFH FKDG CSC  YW
Sbjct: 698 ITVRDSHRFHCFKDGQCSCGGYW 720


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/571 (40%), Positives = 353/571 (61%), Gaps = 4/571 (0%)

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           + +C +  A+ EG+Q+HAH++K       ++ T LI +Y + G L+ AR V +    R+ 
Sbjct: 48  ITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPERNV 107

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           VS+TA+I+GY+  G   +A +LF  M         NE T+ TVL++C    S++    V 
Sbjct: 108 VSWTAMISGYSQSGRHAEALELFIRM--LRAGCKANEFTLATVLTSCPVHQSIQQVEQVH 165

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
           SL+      S++ V ++L+DMY K G++ +AR +F+ + +RD +S   +I GY       
Sbjct: 166 SLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDD 225

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           EAL LFRQ+  S ++ N VTF ++L + + L +L+ GK +H  I +       + L  SL
Sbjct: 226 EALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFF-IVLQNSL 284

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           IDMY+KCG +  + +VFD M  ++  SWNAM+ G   HG   + + LF R + E ++PD 
Sbjct: 285 IDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLF-RTMTEEVKPDS 343

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
           +T + VLS C+H GL+D G   F+ ++++      + HYGC++DLLGR+G   +A  L++
Sbjct: 344 VTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIE 403

Query: 497 TMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
            M  +P  AIW SLLGACRVH  + +GE VA+ LL++EP N G YV+LSN+YA AG W D
Sbjct: 404 HMPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGMWKD 463

Query: 557 VATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGF 616
           V  +R  + +  + K P  S I +  V+H F   ++ HP+ K I   + E+   ++ +GF
Sbjct: 464 VFRVRKLMLENTVTKEPAKSWIILDKVIHTFHSSERFHPRKKDINAKIKEVYVDVKAAGF 523

Query: 617 VPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKL 676
           VPD S VL+D+D+E KE  L  HSEKLAI +GL++T PG TI+++KNLR+C +CH+  K 
Sbjct: 524 VPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIQVMKNLRICVDCHNFAKF 583

Query: 677 ISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +SK++ REI  RD+NRFH  KDG C+C DYW
Sbjct: 584 VSKVYGREISLRDKNRFHLLKDGACTCGDYW 614



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/384 (31%), Positives = 207/384 (53%), Gaps = 9/384 (2%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           A ++ C   Q +   +QVH+ ++K       +  ++LI +      G L  A  V + + 
Sbjct: 46  AAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRC--GALDDARNVLDGMP 103

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           E N V W  +I G+S S     A++ ++RM+ +G   N +T   +L SC    +I + +Q
Sbjct: 104 ERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQ 163

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +H+ V+K   ES  FV +SL++MY ++G ++ AR VF+    RD VS TA+I+GYA  G 
Sbjct: 164 VHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGL 223

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
            D+A  LF ++         N  T  T+L++ + + SL  G  V  LI    L   + + 
Sbjct: 224 DDEALDLFRQL--YSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQ 281

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N+LIDMYSKCG L+ +R +F+++ +R  ISWN M+ GY      +E + LFR M +  ++
Sbjct: 282 NSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTE-EVK 340

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+ VT L+VL  C++ G +D G  I   I K    + ++  +  +ID+  + G ++ A  
Sbjct: 341 PDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALD 400

Query: 392 VFDGMGYK-TLASWNAMISGLAMH 414
           + + M ++ T A W +++    +H
Sbjct: 401 LIEHMPFEPTPAIWGSLLGACRVH 424


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 244/581 (41%), Positives = 346/581 (59%), Gaps = 4/581 (0%)

Query: 129 NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF 188
           N   +  IL+SC    A+  G+Q+HA +L  G   D  + T L+++YA  G +  AR VF
Sbjct: 67  NHSNYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVF 126

Query: 189 NKSSLRDAVS-YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
           ++   +  V  +  LI  YA  G  + A +L+  M +   +  P+  T   VL ACA + 
Sbjct: 127 DEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAM-LAYGSMKPDNFTYPPVLKACAALL 185

Query: 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG 307
            L  G  V   +      +++ V   LIDMY+KCG + +A  +F     RD   WN MI 
Sbjct: 186 DLSAGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIA 245

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
                    EAL L R M    I P   T +S + A A   AL  G+ +H Y  +     
Sbjct: 246 ACGQNGRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGS 305

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
            +  L TSL+DMYAK G +  A  +F+ + ++ L SWNAMI G  MHG AD A  LFSRM
Sbjct: 306 QD-KLKTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRM 364

Query: 428 IGEG-LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAG 486
             E  + PD ITFVGVLSACNH G++   ++ F+ M+  Y I P +QHY C+VD+LG +G
Sbjct: 365 RSEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSG 424

Query: 487 LFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSN 546
            F EA  ++K M +KPD+ IW +LL  C++H  +EL E   + L+ELEPE+ G YVLLSN
Sbjct: 425 RFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALQKLIELEPEDAGNYVLLSN 484

Query: 547 MYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDE 606
           +YA +G+W++ A +R  + ++G+KK+  CS IE+    H FLVGD  HP+S  IYE L+ 
Sbjct: 485 IYAESGKWEEAARVRKLMTNRGLKKIIACSWIELKGKFHGFLVGDASHPRSDDIYEELER 544

Query: 607 IDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRV 666
           ++ L+ ++G+VPDT+ V ++++++ K   +  HSE+LAIA+GLIST P T + + KNLRV
Sbjct: 545 LEGLISQTGYVPDTTPVFHNVEDDEKRNMVWGHSERLAIAFGLISTPPRTKLLVTKNLRV 604

Query: 667 CGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           C +CH   KLIS+I  REII RD NR+HHF +G CSC D+W
Sbjct: 605 CEDCHVVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 645



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/396 (29%), Positives = 205/396 (51%), Gaps = 14/396 (3%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ---VIWNNIIR 103
           +Q+H++++ +G        ++L+++ A    G +S A  VF+ +  PNQ    +WN +IR
Sbjct: 88  RQLHARLLVSGTGLDAVLATRLVDLYASC--GHVSLARRVFDEM--PNQGNVFLWNVLIR 143

Query: 104 GHSLSSSPVVAIKFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE 162
            ++       AI+ Y  M+  G + P+ +T+P +LK+CA +  +S G+++H  V++    
Sbjct: 144 AYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSAGREVHDRVMRTNWA 203

Query: 163 SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
           +D FV T LI+MYA+ G ++ A  VFN +++RDA  + ++I      G   +A  L   M
Sbjct: 204 TDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQNGRPAEALTLCRNM 263

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
               E   P  +T+V+ +SA A   +L  G  +       G GS   +  +L+DMY+K G
Sbjct: 264 A--AEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSG 321

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVL 341
            ++ A  LFE +  R++ISWN MI G+        A  LF +M  ++ + P+ +TF+ VL
Sbjct: 322 WVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSEAQVMPDHITFVGVL 381

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
            AC + G +   K +   +   +     V  +T L+D+    G  K A  V  GM  K  
Sbjct: 382 SACNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPD 441

Query: 402 AS-WNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           +  W A+++G  +H   + A     ++I   L+P+D
Sbjct: 442 SGIWGALLNGCKIHKNVELAELALQKLI--ELEPED 475



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 146/305 (47%), Gaps = 7/305 (2%)

Query: 32  PSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           P L   +   ++   ++VH ++++T      F  + LI++ A     D ++A+    TIR
Sbjct: 176 PVLKACAALLDLSAGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIR 235

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           +    +WN++I     +  P  A+     M   G  P   T    + + A  SA+  G++
Sbjct: 236 D--AAVWNSMIAACGQNGRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRE 293

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +H +  + G  S   + TSL++MYA++G +  A ++F +   R+ +S+ A+I G+   G+
Sbjct: 294 LHGYGWRRGFGSQDKLKTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGH 353

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL-IEGHGLGSNLHV 270
            D A +LF  M   E   +P+  T V VLSAC H G ++    V  L +  + +   +  
Sbjct: 354 ADHAFELFSRMR-SEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQH 412

Query: 271 TNALIDMYSKCGDLVKARDLFES-IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
              L+D+    G   +A D+ +  + K D   W  ++ G     + + A +  +++++  
Sbjct: 413 YTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALQKLIE-- 470

Query: 330 IEPND 334
           +EP D
Sbjct: 471 LEPED 475


>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 600

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/478 (47%), Positives = 322/478 (67%), Gaps = 6/478 (1%)

Query: 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDL 290
           PN  T+  VL AC  +G    G  + +   GHGL  + +V   L+++Y++C ++  AR++
Sbjct: 128 PNSFTLAFVLKACTALGE---GQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVALARNV 184

Query: 291 FES-IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA 349
           F+  +E +++++W+ MIGGY+      EAL LFR M    + P++VT +SV+ ACA  GA
Sbjct: 185 FDGMVEDKNLVAWSSMIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGA 244

Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
           LDLGKW+HA+ID+    ++ + L T+LIDMYAKCG I+ A+ VFD M  +   +W+AMI 
Sbjct: 245 LDLGKWVHAFIDRKGITVD-LELSTALIDMYAKCGLIERAKSVFDSMVERDTKAWSAMIV 303

Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS 469
           GLAMHG A+ AL LFSRM+   ++P+++TFVGVLSAC H+GL+D GR+Y+  M Q+  I 
Sbjct: 304 GLAMHGLAEDALGLFSRMLQLKVRPNNVTFVGVLSACAHSGLVDDGRRYWCTM-QELGIE 362

Query: 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKH 529
             +++YGCMVDLL R+GL DEA + +  M + P++ IW +LL A +   R+++ E  ++ 
Sbjct: 363 ASMENYGCMVDLLCRSGLLDEAFSFVTGMPISPNSVIWRNLLVASKSSNRIDIVELASRR 422

Query: 530 LLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLV 589
           L ELEP+NP  YVLLSN+YA   +WD V  +R ++ D  +  V GCSSIE+   +H+F+V
Sbjct: 423 LFELEPQNPENYVLLSNLYALNSQWDRVRYMRKKMKDNNVTVVAGCSSIEINGYLHKFVV 482

Query: 590 GDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGL 649
            D  HP+ K I  +L EI   +  +G  P T+ VL+D+ EE KE AL  HSE+LAIAYGL
Sbjct: 483 SDGSHPEIKKIRLVLREIADRVLCAGHKPWTAAVLHDVVEEEKEVALCEHSERLAIAYGL 542

Query: 650 ISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           + TK    IR+VKNLR C +CH  TK+ISK + REII RDR RFH F  G+CSCND+W
Sbjct: 543 LKTKAPHVIRVVKNLRFCPDCHEVTKIISKSYGREIIVRDRVRFHRFIGGSCSCNDFW 600



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 140/442 (31%), Positives = 241/442 (54%), Gaps = 52/442 (11%)

Query: 24  PYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQ--FALSKLIEICAVSPFGDLS 81
           P  LL+ +  ++L+ +C  ++ ++  H+  ++  L      FALSKL+  CA +    ++
Sbjct: 15  PRHLLEAR-VVSLVRRCPGLRALRGAHAHFLRLRLPRLTYAFALSKLLASCAAASATTVA 73

Query: 82  --YALLVFETIREPNQVIWNNIIRG-----HSLSSSPVVAIKFYVRMILSGF-VPNTYTF 133
             YA  +F+ I EP    +N++IR       S +S        Y RM+ +G   PN++T 
Sbjct: 74  SSYARALFDQIPEPTAFCYNSLIRAVSGSGSSSNSGTTDTFLLYRRMLHAGSPAPNSFTL 133

Query: 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN-KSS 192
            F+LK+C   +A+ EG+Q+HA     GLE  P+V T L+N+YA+  E+  AR VF+    
Sbjct: 134 AFVLKAC---TALGEGQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVALARNVFDGMVE 190

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
            ++ V+++++I GY+  G +++A  LF +M     N  P+E T+V+V+SACA  G+L+LG
Sbjct: 191 DKNLVAWSSMIGGYSRMGMVNEALGLFRDMQAVGVN--PDEVTMVSVISACAKAGALDLG 248

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
            WV + I+  G+  +L ++ ALIDMY+KCG + +A+ +F+S+ +RD  +W+ MI G    
Sbjct: 249 KWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKSVFDSMVERDTKAWSAMIVGLAMH 308

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
              ++AL LF +MLQ  + PN+VTF+ VL ACA+ G +D G+                  
Sbjct: 309 GLAEDALGLFSRMLQLKVRPNNVTFVGVLSACAHSGLVDDGR----------------RY 352

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
           W ++ ++      I+A           ++ ++  M+  L   G  D+A   FS + G  +
Sbjct: 353 WCTMQEL-----GIEA-----------SMENYGCMVDLLCRSGLLDEA---FSFVTGMPI 393

Query: 433 QPDDITFVGVLSACNHAGLLDI 454
            P+ + +  +L A   +  +DI
Sbjct: 394 SPNSVIWRNLLVASKSSNRIDI 415


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 265/689 (38%), Positives = 391/689 (56%), Gaps = 26/689 (3%)

Query: 33  SLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +L++  +  +++  + +H+ I  +GL       + LI++      G + +A LVFE+  E
Sbjct: 47  ALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDM--YCKCGRIDWARLVFESADE 104

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK--ISAISEGK 150
            + V WN++I G+    S    ++  V+M+  G   N+Y     LK+C     S+I  GK
Sbjct: 105 LDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGK 164

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGY---- 206
            +H   +KLGL+ D  V T+L++ YA+ G+LE A  +F      + V Y A+I G+    
Sbjct: 165 MLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQME 224

Query: 207 -ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
             +  + ++A  LF EM  R     P+E T  ++L AC+ + + E G  + + I  + L 
Sbjct: 225 TMADEFANEAMYLFFEMQSR--GMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQ 282

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
           S+  + NAL+++YS  G +      F S  K DV+SW  +I G+     ++  L LF ++
Sbjct: 283 SDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHEL 342

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
           L S  +P++ T   +L ACA L A+  G+ IHAY  K     N   +  S I MYAKCG+
Sbjct: 343 LFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIG-NFTIIQNSQICMYAKCGD 401

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           I +A   F       + SW+ MIS  A HG A +A+ LF  M G G+ P+ ITF+GVL A
Sbjct: 402 IDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVA 461

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           C+H GL++ G +YF  M +D+ I+P ++H  C+VDLLGRAG   EAE+ +     + D  
Sbjct: 462 CSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPV 521

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
           +W SLL ACRVH   + G+ VA+ ++ELEPE   +YVLL N+Y  AG       IR  + 
Sbjct: 522 MWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMK 581

Query: 566 DKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIY----EMLDEI---DALLEKSGFVP 618
           D+G+KK PG S IEVG+VVH F+ GD+ HP S+ IY    EML+EI   D + EK   V 
Sbjct: 582 DRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYIDEK--LVS 639

Query: 619 DTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLIS 678
           D SE  +          +S+HSEKLA+ +G+IS      +R++KNLR C +CH   KL S
Sbjct: 640 DASEPKHK-----DNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFS 694

Query: 679 KIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           ++ NREII RD  RFH F+DG+CSC DYW
Sbjct: 695 RLENREIILRDPIRFHRFRDGSCSCGDYW 723



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 211/436 (48%), Gaps = 20/436 (4%)

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           N V WN++I G++        +  +    +S    + +TF   L  C +   +  G+ IH
Sbjct: 5   NVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIH 64

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
           A +   GL     +  SLI+MY + G ++ ARLVF  +   D+VS+ +LI GY   G  D
Sbjct: 65  ALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSND 124

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACA--HMGSLELGNWVCSLIEGHGLGSNLHVT 271
           +  +L  +M     N   N   + + L AC      S+E G  +       GL  ++ V 
Sbjct: 125 EMLRLLVKMLRHGLNL--NSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVG 182

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY----THTSDY-KEALMLFRQML 326
            AL+D Y+K GDL  A  +F+ +   +V+ +N MI G+    T   ++  EA+ LF +M 
Sbjct: 183 TALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQ 242

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
              ++P++ TF S+L AC+ + A + GK IHA I K + + +   +  +L+++Y+  G+I
Sbjct: 243 SRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEF-IGNALVELYSLSGSI 301

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
           +   + F       + SW ++I G   +G+ +  L+LF  ++  G +PD+ T   +LSAC
Sbjct: 302 EDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSAC 361

Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM----VDLLGRAGLFDEAEALLKTMEMKP 502
            +   +  G Q     I  Y I   + ++  +    + +  + G  D A    K  +  P
Sbjct: 362 ANLAAVKSGEQ-----IHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETK-NP 415

Query: 503 DAAIWTSLLGACRVHG 518
           D   W+ ++ +   HG
Sbjct: 416 DIVSWSVMISSNAQHG 431



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 113/347 (32%), Positives = 174/347 (50%), Gaps = 16/347 (4%)

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
           R+ VS+ +LI+GY   G+  +   LF E   R  +   ++ T    LS C     L LG 
Sbjct: 4   RNVVSWNSLISGYTQMGFYHEVMNLFKEA--RMSDLRLDKFTFSNALSVCGRTLDLRLGR 61

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTS 313
            + +LI   GLG  + +TN+LIDMY KCG +  AR +FES ++ D +SWN +I GY    
Sbjct: 62  LIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIG 121

Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACA--YLGALDLGKWIHAYIDKNHQKLNNVS 371
              E L L  +ML+  +  N     S L AC   +  +++ GK +H    K    L +V 
Sbjct: 122 SNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDL-DVV 180

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISG-LAMHGKAD----KALSLFSR 426
           + T+L+D YAK G+++ A ++F  M    +  +NAMI+G L M   AD    +A+ LF  
Sbjct: 181 VGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFE 240

Query: 427 MIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAG 486
           M   G++P + TF  +L AC+     + G+Q  +A I  Y +         +V+L   +G
Sbjct: 241 MQSRGMKPSEFTFSSILKACSTIEAFECGKQ-IHAQIFKYNLQSDEFIGNALVELYSLSG 299

Query: 487 LFDEAEALLKTMEMKP--DAAIWTSLLGACRVHGRLELGESVAKHLL 531
             ++    LK     P  D   WTSL+     +G+ E G ++   LL
Sbjct: 300 SIEDG---LKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELL 343



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 104/220 (47%), Gaps = 5/220 (2%)

Query: 296 KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKW 355
           KR+V+SWN +I GYT    Y E + LF++   S++  +  TF + L  C     L LG+ 
Sbjct: 3   KRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRL 62

Query: 356 IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHG 415
           IHA I  +      V L  SLIDMY KCG I  A  VF+        SWN++I+G    G
Sbjct: 63  IHALITVSGLG-GPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIG 121

Query: 416 KADKALSLFSRMIGEGLQPDDITFVGVLSAC--NHAGLLDIGRQYFNAMIQDYKISPKLQ 473
             D+ L L  +M+  GL  +       L AC  N +  ++ G+      ++   +   + 
Sbjct: 122 SNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVK-LGLDLDVV 180

Query: 474 HYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
               ++D   + G  ++A  + K M   P+  ++ +++  
Sbjct: 181 VGTALLDTYAKIGDLEDATKIFKLMP-DPNVVMYNAMIAG 219



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 3/136 (2%)

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
           M  + + SWN++ISG    G   + ++LF       L+ D  TF   LS C     L +G
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL-GAC 514
           R   +A+I    +   +     ++D+  + G  D A  + ++ + + D+  W SL+ G  
Sbjct: 61  R-LIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESAD-ELDSVSWNSLIAGYV 118

Query: 515 RVHGRLELGESVAKHL 530
           R+    E+   + K L
Sbjct: 119 RIGSNDEMLRLLVKML 134


>gi|302820671|ref|XP_002992002.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
 gi|300140244|gb|EFJ06970.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
          Length = 620

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/620 (37%), Positives = 361/620 (58%), Gaps = 33/620 (5%)

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           M   G  P+   F   L +CA    +  G+QIH+ V+  GL S+  +  SL+NMY +  +
Sbjct: 1   MQWEGTRPDKVVFVIALDACAASGELDHGRQIHSSVVDSGLTSNIIISNSLVNMYGKCQD 60

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE-------------- 226
           +  A  VF+   LRD VS+TA++  YA  G    A  +F+ MP ++              
Sbjct: 61  VPCAEKVFDGMLLRDVVSWTAMLAVYAQNGCWSQALHVFEAMPRKDDVSWNAVINASVGN 120

Query: 227 ---------------ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN-LHV 270
                          E    NE T++++L AC  +  L+L   + +     G G N   V
Sbjct: 121 SKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAV 180

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD--YKEALMLFRQMLQS 328
            N++++MY++CG L+  +  F+S+E++ +++W++M+  Y  + D   + A   F++M   
Sbjct: 181 GNSVVNMYARCGSLLDTKKAFDSLEEKGLVAWSIMLAAYAQSKDGSGRRAFKFFQEMEAE 240

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            I+P +VTF+S L ACA +  L+ G+ +H     +     ++ L  ++I+MY KCG+   
Sbjct: 241 GIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSD 300

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A+ VFD M  K L SWN++I   A +G A +ALS    M+ +G  PD  T V +L   +H
Sbjct: 301 AKLVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLSH 360

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL-LKTMEMKPDAAIW 507
           AGLL+ G ++F + IQD+ + P      C+VDLL R G  D AE L L +   + D   W
Sbjct: 361 AGLLERGVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPACQADTIAW 420

Query: 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
            +LL AC+ +G  + G   A+ + ELEP++ G++V+L+N+YA  GRW D + IR  +   
Sbjct: 421 MTLLAACKSYGDPQRGIRCAERVFELEPQHSGSFVVLANLYASVGRWSDASRIRKMMERM 480

Query: 568 GMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
            +KK PGCS IE+   VHEF+ G+  HP+ + I E L+++   + ++G+VPDT+ V++D+
Sbjct: 481 SVKKEPGCSWIELSGSVHEFISGESKHPKIREICEELEKLTLRMREAGYVPDTTNVVHDV 540

Query: 628 DEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIA 687
           +E  KE  LS HSE+LAI +GL+ST+PG TIR+VKNLRVC +CH+ATK+IS +  REI+ 
Sbjct: 541 EEGDKEEILSRHSERLAIVFGLMSTRPGETIRVVKNLRVCSDCHAATKIISSVVGREIVV 600

Query: 688 RDRNRFHHFKDGNCSCNDYW 707
           RD +RFHHFK G CSC D+W
Sbjct: 601 RDSSRFHHFKHGQCSCGDFW 620


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/527 (44%), Positives = 329/527 (62%), Gaps = 9/527 (1%)

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
           L S R VF     RD VS+  +I+G A  G  +DA  +  EM     +  P+  T+ +VL
Sbjct: 146 LGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMG--NADLRPDSFTLSSVL 203

Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVI 300
              A   +L  G  +      +G  +++ + ++LIDMY+KC  +  +  +F  + + D I
Sbjct: 204 PIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGI 263

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           SWN +I G      + E L  F+QML + I+PN V+F S++PACA+L  L LGK +H YI
Sbjct: 264 SWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYI 323

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
            ++     NV + ++L+DMYAKCGNI+ A  +FD M    + SW AMI G A+HG A  A
Sbjct: 324 IRSRFD-GNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDA 382

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
           +SLF RM  EG++P+ + F+ VL+AC+HAGL+D   +YFN+M QDY+I P L+HY  + D
Sbjct: 383 ISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVAD 442

Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540
           LLGR G  +EA   +  M ++P  ++W++LL ACRVH  +EL E V+K L  ++P+N GA
Sbjct: 443 LLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGA 502

Query: 541 YVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHI 600
           YVLLSN+Y+ AGRW D   +R  + DKGMKK P CS IE+ + VH F+ GDK HP    I
Sbjct: 503 YVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRI 562

Query: 601 YEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRI 660
            E L  +   +E+ G+V DT+EVL+D++EE K   L  HSE+LAI +G+IST  GTTIR+
Sbjct: 563 NEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRV 622

Query: 661 VKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            KNLRVC +CH+ATK ISKI  REI+      F+ F D     N  W
Sbjct: 623 TKNLRVCVDCHTATKFISKIVGREIV------FYFFLDEVGVLNVKW 663



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 177/330 (53%), Gaps = 3/330 (0%)

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145
           VFE + + + V WN +I G++ +     A+     M  +   P+++T   +L   A+   
Sbjct: 152 VFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVN 211

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
           + +GK+IH + ++ G ++D F+ +SLI+MYA+   ++ +  VF      D +S+ ++I G
Sbjct: 212 LLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAG 271

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
               G  D+  + F +M I +    PN  +  +++ ACAH+ +L LG  +   I      
Sbjct: 272 CVQNGMFDEGLKFFQQMLIAK--IKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFD 329

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
            N+ + +AL+DMY+KCG++  AR +F+ +E  D++SW  MI GY       +A+ LF++M
Sbjct: 330 GNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRM 389

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
               ++PN V F++VL AC++ G +D        + ++++ +  +  + ++ D+  + G 
Sbjct: 390 EVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGR 449

Query: 386 IKAAEQVFDGMGYKTLAS-WNAMISGLAMH 414
           ++ A +    M  +   S W+ +++   +H
Sbjct: 450 LEEAYEFISDMHIEPTGSVWSTLLAACRVH 479



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 115/434 (26%), Positives = 200/434 (46%), Gaps = 32/434 (7%)

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           M+ SG  P+   FP +LKSC  +  +  G+ +H  +++LG+  D +   +L+NMY++   
Sbjct: 1   MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWS 60

Query: 181 LESARLV-FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTV 239
           LE   +  F  S +   +     I      G   ++  L  E+  R      N       
Sbjct: 61  LEEGGVQRFCDSKMLGGIPEPREI------GKCSNSHDLPCELDERVAGIDQN------- 107

Query: 240 LSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD----LVKARDLFESIE 295
                  G L   N + +++        +       D+YSK       L   R +FE + 
Sbjct: 108 -------GDL---NQMSNILYQVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMP 157

Query: 296 KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKW 355
           KRD++SWN +I G      +++ALM+ R+M  +++ P+  T  SVLP  A    L  GK 
Sbjct: 158 KRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKE 217

Query: 356 IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHG 415
           IH Y  +N     +V + +SLIDMYAKC  +  + +VF  +      SWN++I+G   +G
Sbjct: 218 IHGYAIRNGYDA-DVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNG 276

Query: 416 KADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY 475
             D+ L  F +M+   ++P+ ++F  ++ AC H   L +G+Q    +I+  +    +   
Sbjct: 277 MFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRS-RFDGNVFIA 335

Query: 476 GCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEP 535
             +VD+  + G    A  +   ME+  D   WT+++    +HG      S+ K  +E+E 
Sbjct: 336 SALVDMYAKCGNIRTARWIFDKMELY-DMVSWTAMIMGYALHGHAYDAISLFKR-MEVEG 393

Query: 536 ENPGAYVLLSNMYA 549
             P     ++ + A
Sbjct: 394 VKPNYVAFMAVLTA 407



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 188/411 (45%), Gaps = 57/411 (13%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L + ++  N+   K++H   I+ G     F  S LI++ A     D S    VF  + + 
Sbjct: 203 LPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDS--CRVFYMLPQH 260

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           + + WN+II G   +      +KF+ +M+++   PN  +F  I+ +CA ++ +  GKQ+H
Sbjct: 261 DGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLH 320

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
            ++++   + + F+ ++L++MYA+ G + +AR +F+K  L D VS+TA+I GYA  G+  
Sbjct: 321 GYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAY 380

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL-ELGNWVCSLIEGHGLGSNLHVTN 272
           DA  LF  M +  E   PN    + VL+AC+H G + E   +  S+ + + +   L    
Sbjct: 381 DAISLFKRMEV--EGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYA 438

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           A+ D+  + G L +A                     Y   SD              +IEP
Sbjct: 439 AVADLLGRVGRLEEA---------------------YEFISDM-------------HIEP 464

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL-----NNVSLWTSLIDMYAKCGNIK 387
               + ++L AC     ++L        +K  +KL      N+  +  L ++Y+  G  K
Sbjct: 465 TGSVWSTLLAACRVHKNIELA-------EKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWK 517

Query: 388 AAEQVF-----DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
            A ++       GM  K   SW  + + +      DK+   + R I E L+
Sbjct: 518 DARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDR-INEALK 567


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/486 (45%), Positives = 322/486 (66%), Gaps = 4/486 (0%)

Query: 225  REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
            R    +P+  T   ++ ACA + +L  G  + +    +G  + + V N+L+ +Y  CG  
Sbjct: 796  RRRLALPDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLF 855

Query: 285  VKARDLFES--IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
              A  +F+   +  R+++SWN M+  +       E L +F +ML  +  P+  T +SVL 
Sbjct: 856  ESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLT 915

Query: 343  ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-KTL 401
            ACA  GAL LG+ +H Y++K    + N  +  +LID+YAKCG++  A ++F+ MG  +T+
Sbjct: 916  ACAEFGALALGRRVHVYVEKVGL-VENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTV 974

Query: 402  ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
             SW ++I GLA +G   +AL LFS M  E L P +IT VGVL AC+H GL+D G +YF+ 
Sbjct: 975  VSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDR 1034

Query: 462  MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
            M +DY ISP+++H GCMVDLLGRAG  +EA   + TM ++P+A +W +LLG+C +H +LE
Sbjct: 1035 MKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLE 1094

Query: 522  LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
            LG+   + L+EL+P + G YVLLSN+YA  G W DV  +R  +    ++K PG S +E+ 
Sbjct: 1095 LGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELR 1154

Query: 582  SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
            + V+EF++GD+ HP+S+ IYEML EI   L + G++P TS VL D++EE KE AL++HSE
Sbjct: 1155 NSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKETALNYHSE 1214

Query: 642  KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
            +LAIA+ L+ + PG  IRI+KNLR+CG+CH A  LISK+++REII RDR+RFHHF+ G C
Sbjct: 1215 RLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQGGAC 1274

Query: 702  SCNDYW 707
            SC DYW
Sbjct: 1275 SCKDYW 1280



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 183/334 (54%), Gaps = 9/334 (2%)

Query: 99   NNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLK 158
            N ++R  + S  P VA++ + R +    +P+T+T+P ++++CA++ A+ EG+ +HA   K
Sbjct: 776  NTVLRIAAGSPRPRVALELHRRRLA---LPDTHTYPPLIQACARLLALREGECLHAEAAK 832

Query: 159  LGLESDPFVHTSLINMYAQNGELESARLVFNKSSL--RDAVSYTALITGYASRGYLDDAR 216
             G  +  FV  SL+++Y   G  ESA  VF++  +  R+ VS+ +++  +A+ G  ++  
Sbjct: 833  NGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVL 892

Query: 217  QLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALID 276
             +F EM     +F P+  T+V+VL+ACA  G+L LG  V   +E  GL  N HV+NALID
Sbjct: 893  TVFWEM--LGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALID 950

Query: 277  MYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV 335
            +Y+KCG +  AR +FE +   R V+SW  +I G       KEAL LF  M +  + P ++
Sbjct: 951  LYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEI 1010

Query: 336  TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
            T + VL AC++ G +D G      + +++     +     ++D+  + G ++ A      
Sbjct: 1011 TMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIIT 1070

Query: 396  MGYKTLA-SWNAMISGLAMHGKADKALSLFSRMI 428
            M  +  A  W  ++   AMH K +     + R++
Sbjct: 1071 MPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLV 1104



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 143/278 (51%), Gaps = 8/278 (2%)

Query: 36   LLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
            L+  C  +  +++   +H++  K G     F  + L+ +       + ++ +     +R 
Sbjct: 810  LIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRG 869

Query: 93   PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
             N V WN+++   + +  P   +  +  M+   F P+ +T   +L +CA+  A++ G+++
Sbjct: 870  RNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRV 929

Query: 153  HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL-RDAVSYTALITGYASRGY 211
            H +V K+GL  +  V  +LI++YA+ G +  AR +F +  L R  VS+T+LI G A+ G+
Sbjct: 930  HVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGF 989

Query: 212  LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHV 270
              +A +LF  M    E  VP E T+V VL AC+H G ++ G  +   + E +G+   +  
Sbjct: 990  GKEALELFSLM--EREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEH 1047

Query: 271  TNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIG 307
               ++D+  + G + +A D   ++  + + + W  ++G
Sbjct: 1048 LGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLG 1085


>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Vitis vinifera]
          Length = 561

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/561 (39%), Positives = 347/561 (61%), Gaps = 13/561 (2%)

Query: 19  PSSDPPYKLLQNQPSLA-LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF 77
           P   P  +      S++ LL  CT    ++QVH++II+ GLH   F +S+ + +C  +  
Sbjct: 13  PDYLPTLRSFDTTSSISTLLKACTTTSTLEQVHARIIRKGLHQDHFIISQFLTLC--NSL 70

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
            + SY   VF  +  P+ V+WN  I+G+S + S  + +  ++RM  S  VP+ +T+P ++
Sbjct: 71  SNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLI 130

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
           K+C+K+  + EG   H   ++ G+  D FV TSLI++Y + GE+  AR VF++   R+ V
Sbjct: 131 KACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVV 190

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           S+TA+I GYAS   L +AR+LFDEMP  E+N V   +    ++S     G L     +  
Sbjct: 191 SWTAMIAGYASFSDLVEARKLFDEMP--EKNAVSWNA----IISGYVKCGDLRSARKMFD 244

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
            +       N+     +ID Y+K GD+  AR +FE   +RDV++W+ +I GY       E
Sbjct: 245 EMPHR----NVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNE 300

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           A+ +F +M   N++P++   +S++ AC+ +G+L+L KW+  Y+ K+   ++   +  +LI
Sbjct: 301 AVKIFLEMCSRNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALI 360

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI 437
           DM AKCG++  A ++F+ M  + L S+ +M+ GL++HG   +A+SLFSRM+ EGL PDD+
Sbjct: 361 DMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDV 420

Query: 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT 497
            F  +L+AC+ AGL+D G  YF +M  DY I P   HY CMVDLLGRAG   EA  LLK+
Sbjct: 421 AFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKS 480

Query: 498 MEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557
           M ++P A  W +LLGAC++H  +ELGE VA  L ELEP+N G YVLLSN+YA A +W DV
Sbjct: 481 MPVEPHAGAWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDV 540

Query: 558 ATIRTRLNDKGMKKVPGCSSI 578
           + +R ++ ++G++K+PGCS I
Sbjct: 541 SLLRNKMRERGIRKIPGCSWI 561


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 265/689 (38%), Positives = 391/689 (56%), Gaps = 26/689 (3%)

Query: 33  SLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +L++  +  +++  + +H+ I  +GL       + LI++      G + +A LVFE+  E
Sbjct: 126 ALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDM--YCKCGRIDWARLVFESADE 183

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK--ISAISEGK 150
            + V WN++I G+    S    ++  V+M+  G   N+Y     LK+C     S+I  GK
Sbjct: 184 LDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGK 243

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGY---- 206
            +H   +KLGL+ D  V T+L++ YA+ G+LE A  +F      + V Y A+I G+    
Sbjct: 244 MLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQME 303

Query: 207 -ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
             +  + ++A  LF EM  R     P+E T  ++L AC+ + + E G  + + I  + L 
Sbjct: 304 TMADEFANEAMYLFFEMQSR--GMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQ 361

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
           S+  + NAL+++YS  G +      F S  K DV+SW  +I G+     ++  L LF ++
Sbjct: 362 SDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHEL 421

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
           L S  +P++ T   +L ACA L A+  G+ IHAY  K     N   +  S I MYAKCG+
Sbjct: 422 LFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIG-NFTIIQNSQICMYAKCGD 480

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           I +A   F       + SW+ MIS  A HG A +A+ LF  M G G+ P+ ITF+GVL A
Sbjct: 481 IDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVA 540

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           C+H GL++ G +YF  M +D+ I+P ++H  C+VDLLGRAG   EAE+ +     + D  
Sbjct: 541 CSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPV 600

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
           +W SLL ACRVH   + G+ VA+ ++ELEPE   +YVLL N+Y  AG       IR  + 
Sbjct: 601 MWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMK 660

Query: 566 DKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIY----EMLDEI---DALLEKSGFVP 618
           D+G+KK PG S IEVG+VVH F+ GD+ HP S+ IY    EML+EI   D + EK   V 
Sbjct: 661 DRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYIDEK--LVS 718

Query: 619 DTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLIS 678
           D SE      +      +S+HSEKLA+ +G+IS      +R++KNLR C +CH   KL S
Sbjct: 719 DASE-----PKHKDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFS 773

Query: 679 KIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           ++ NREII RD  RFH F+DG+CSC DYW
Sbjct: 774 RLENREIILRDPIRFHRFRDGSCSCGDYW 802



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 128/416 (30%), Positives = 210/416 (50%), Gaps = 16/416 (3%)

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
           G   ++ T+  +++   +  ++  GK  H H++K   +   F+  +L+ MY + GE + A
Sbjct: 14  GLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVA 73

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
           + +F++   R+ VS+ +LI+GY   G+  +   LF E   R  +   ++ T    LS C 
Sbjct: 74  KKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEA--RMSDLRLDKFTFSNALSVCG 131

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
               L LG  + +LI   GLG  + +TN+LIDMY KCG +  AR +FES ++ D +SWN 
Sbjct: 132 RTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNS 191

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA--YLGALDLGKWIHAYIDK 362
           +I GY       E L L  +ML+  +  N     S L AC   +  +++ GK +H    K
Sbjct: 192 LIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVK 251

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISG-LAMHGKAD--- 418
               L +V + T+L+D YAK G+++ A ++F  M    +  +NAMI+G L M   AD   
Sbjct: 252 LGLDL-DVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFA 310

Query: 419 -KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
            +A+ LF  M   G++P + TF  +L AC+     + G+Q  +A I  Y +         
Sbjct: 311 NEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQ-IHAQIFKYNLQSDEFIGNA 369

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKP--DAAIWTSLLGACRVHGRLELGESVAKHLL 531
           +V+L   +G  ++    LK     P  D   WTSL+     +G+ E G ++   LL
Sbjct: 370 LVELYSLSGSIEDG---LKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELL 422


>gi|15239085|ref|NP_201360.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180382|sp|Q9LSL8.1|PP446_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65570
 gi|8978285|dbj|BAA98176.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010689|gb|AED98072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 252/677 (37%), Positives = 391/677 (57%), Gaps = 14/677 (2%)

Query: 36  LLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LL +C +   +  IK + + ++K+G    + + SKL++  A    GD+ YA  VF+ + E
Sbjct: 71  LLRQCIDERSISGIKTIQAHMLKSGFP-AEISGSKLVD--ASLKCGDIDYARQVFDGMSE 127

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V WN++I           A++ Y  MI +  +P+ YT   + K+ + +S   E ++ 
Sbjct: 128 RHIVTWNSLIAYLIKHRRSKEAVEMYRLMITNNVLPDEYTLSSVFKAFSDLSLEKEAQRS 187

Query: 153 HAHVLKLGLE-SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           H   + LGLE S+ FV ++L++MY + G+   A+LV ++   +D V  TALI GY+ +G 
Sbjct: 188 HGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGE 247

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
             +A + F  M +  E   PNE T  +VL +C ++  +  G  +  L+   G  S L   
Sbjct: 248 DTEAVKAFQSMLV--EKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQ 305

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
            +L+ MY +C  +  +  +F+ IE  + +SW  +I G       + AL+ FR+M++ +I+
Sbjct: 306 TSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIK 365

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           PN  T  S L  C+ L   + G+ IH  + K     +  +  + LID+Y KCG    A  
Sbjct: 366 PNSFTLSSALRGCSNLAMFEEGRQIHGIVTKYGFDRDKYA-GSGLIDLYGKCGCSDMARL 424

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VFD +    + S N MI   A +G   +AL LF RMI  GLQP+D+T + VL ACN++ L
Sbjct: 425 VFDTLSEVDVISLNTMIYSYAQNGFGREALDLFERMINLGLQPNDVTVLSVLLACNNSRL 484

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           ++ G + F++  +D KI     HY CMVDLLGRAG  +EAE +L T  + PD  +W +LL
Sbjct: 485 VEEGCELFDSFRKD-KIMLTNDHYACMVDLLGRAGRLEEAE-MLTTEVINPDLVLWRTLL 542

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
            AC+VH ++E+ E + + +LE+EP + G  +L+SN+YA  G+W+ V  +++++ D  +KK
Sbjct: 543 SACKVHRKVEMAERITRKILEIEPGDEGTLILMSNLYASTGKWNRVIEMKSKMKDMKLKK 602

Query: 572 VPGCSSIEVGSVVHEFLVGDKV-HPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
            P  S +E+    H F+ GD   HP S+ I E L+E+    +  G+V D S V  DM+E 
Sbjct: 603 NPAMSWVEINKETHTFMAGDLFSHPNSEQILENLEELIKKSKDLGYVEDKSCVFQDMEET 662

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KE +L  HSEKLAIA+  +    G +IRI+KNLRVC +CHS  K++S++  REII RD 
Sbjct: 663 AKERSLHQHSEKLAIAFA-VWRNVGGSIRILKNLRVCVDCHSWIKIVSRVMKREIICRDS 721

Query: 691 NRFHHFKDGNCSCNDYW 707
            RFHHF+DG+CSC DYW
Sbjct: 722 KRFHHFRDGSCSCGDYW 738



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 113/400 (28%), Positives = 203/400 (50%), Gaps = 20/400 (5%)

Query: 108 SSSPVVAI--KFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
           + SP  +I  +F +  I    +  T+ F  +L+ C    +IS  K I AH+LK G  ++ 
Sbjct: 41  TCSPESSINNQFRLLCITCDTLTTTHNFSQLLRQCIDERSISGIKTIQAHMLKSGFPAE- 99

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
              + L++   + G+++ AR VF+  S R  V++ +LI          +A +++  M   
Sbjct: 100 ISGSKLVDASLKCGDIDYARQVFDGMSERHIVTWNSLIAYLIKHRRSKEAVEMYRLMIT- 158

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG-------SNLHVTNALIDMY 278
             N +P+E T+ +V  A + + SLE           HGL        SN+ V +AL+DMY
Sbjct: 159 -NNVLPDEYTLSSVFKAFSDL-SLEK-----EAQRSHGLAVILGLEVSNVFVGSALVDMY 211

Query: 279 SKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
            K G   +A+ + + +E++DV+    +I GY+   +  EA+  F+ ML   ++PN+ T+ 
Sbjct: 212 VKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYA 271

Query: 339 SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
           SVL +C  L  +  GK IH  + K+  + + ++  TSL+ MY +C  +  + +VF  + Y
Sbjct: 272 SVLISCGNLKDIGNGKLIHGLMVKSGFE-SALASQTSLLTMYLRCSLVDDSLRVFKCIEY 330

Query: 399 KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQY 458
               SW ++ISGL  +G+ + AL  F +M+ + ++P+  T    L  C++  + + GRQ 
Sbjct: 331 PNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLAMFEEGRQ- 389

Query: 459 FNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
            + ++  Y           ++DL G+ G  D A  +  T+
Sbjct: 390 IHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARLVFDTL 429


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 250/660 (37%), Positives = 377/660 (57%), Gaps = 46/660 (6%)

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKS 139
           + +A+  FE + E + V WN +I   S S     A+   V M   G   ++ T+   L +
Sbjct: 220 IDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTA 279

Query: 140 CAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSY 199
           CA++ ++  GKQ+HA V++   + DP+V ++LI +YA+ G  + A+ VFN    R++VS+
Sbjct: 280 CARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSW 339

Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
           T LI G         + +LF++M  R E    ++  + T++S C +   L LG  + SL 
Sbjct: 340 TVLIGGSLQYECFSKSVELFNQM--RAELMAIDQFALATLISGCFNRMDLCLGRQLHSLC 397

Query: 260 EGHGLGSNLHVTNALIDMYSKCGDL-------------------------------VKAR 288
              G    + V+N+LI +Y+KCGDL                               +KAR
Sbjct: 398 LKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAR 457

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVLPACAYL 347
           + F+ ++ R+ I+WN M+G Y      ++ L ++  ML Q ++ P+ VT++++   CA +
Sbjct: 458 EFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADI 517

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
           GA  LG  I  +  K    L NVS+  + I MY+KCG I  A+++FD +  K + SWNAM
Sbjct: 518 GANKLGDQIIGHTVKAGLIL-NVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAM 576

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           I+G + HG   +A   F  M+ +G +PD I++V VLS C+H+GL+  G+ YF+ M + + 
Sbjct: 577 ITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHG 636

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
           ISP L+H+ CMVDLLGRAG   EA+ L+  M MKP A +W +LL AC++HG  EL E  A
Sbjct: 637 ISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAA 696

Query: 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF 587
           KH+ EL+  + G+Y+LL+ +Y+ AG+ DD A +R  + DKG+KK PG S +EV + VH F
Sbjct: 697 KHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVF 756

Query: 588 LVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAY 647
              D  HPQ   I   LDE+   +   G+V   S             +  HHSEKLA+A+
Sbjct: 757 KADDVSHPQVIAIRNKLDELMEKIAHLGYVRTESPR-----------SEIHHSEKLAVAF 805

Query: 648 GLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           G++S      I I+KNLR+CG+CH+  KLIS + +RE + RD  RFHHFK G+CSC DYW
Sbjct: 806 GIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 114/440 (25%), Positives = 203/440 (46%), Gaps = 67/440 (15%)

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD- 195
           L+SC    A++  + +H  ++ +GL S  F+  +L++ Y   G L  AR +  ++ +++ 
Sbjct: 11  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLL-RADIKEP 69

Query: 196 -AVSYTALITGYASRGYLDDARQLFDEMPIRE---------------------ENFV--- 230
             +++  ++ GYA +G L DA +LFD MP R+                     E FV   
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 231 ------PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
                 PN  T   V+ +C  +G  EL   +  L        +  V  AL+DM+ +CG +
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYV 189

Query: 285 VKARDLFESIEK-------------------------------RDVISWNVMIGGYTHTS 313
             A  LF  IE+                               RDV+SWN+MI   + + 
Sbjct: 190 DFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSG 249

Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
             +EAL L  +M +  +  +  T+ S L ACA L +L  GK +HA + ++  +++   + 
Sbjct: 250 RVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPY-VA 308

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
           ++LI++YAKCG+ K A++VF+ +  +   SW  +I G   +    K++ LF++M  E + 
Sbjct: 309 SALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMA 368

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
            D      ++S C +   L +GRQ  +  ++    +  +     ++ L  + G    AE 
Sbjct: 369 IDQFALATLISGCFNRMDLCLGRQLHSLCLKSGH-NRAIVVSNSLISLYAKCGDLQNAEF 427

Query: 494 LLKTMEMKPDAAIWTSLLGA 513
           +  +M  + D   WTS++ A
Sbjct: 428 VFSSMSER-DIVSWTSMITA 446



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 120/512 (23%), Positives = 223/512 (43%), Gaps = 66/512 (12%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG-FVPNTYTFPFI 136
           G LS A  +F+ +   +   WN ++ G+  +   +  ++ +V M  SG  +PN +TF  +
Sbjct: 85  GSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCV 144

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           +KSC  +       Q+     K     DP V T+L++M+ + G ++ A  +F++      
Sbjct: 145 MKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTI 204

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIRE-----------------------------E 227
               +++ GYA    +D A + F++M  R+                             +
Sbjct: 205 FCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRK 264

Query: 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA 287
               + +T  + L+ACA + SL  G  + + +       + +V +ALI++Y+KCG   +A
Sbjct: 265 GVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEA 324

Query: 288 RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347
           + +F S++ R+ +SW V+IGG      + +++ LF QM    +  +     +++  C   
Sbjct: 325 KRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNR 384

Query: 348 GALDLGKWIHAYIDKN-HQK-----------------LNNVSL------------WTSLI 377
             L LG+ +H+   K+ H +                 L N               WTS+I
Sbjct: 385 MDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMI 444

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE-GLQPDD 436
             Y++ GNI  A + FDGM  +   +WNAM+     HG  +  L ++S M+ +  + PD 
Sbjct: 445 TAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDW 504

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
           +T+V +   C   G   +G Q     ++   I   +      + +  + G   EA+ L  
Sbjct: 505 VTYVTLFRGCADIGANKLGDQIIGHTVKAGLI-LNVSVANAAITMYSKCGRISEAQKLFD 563

Query: 497 TMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
            +  K D   W +++     HG   +G+  AK
Sbjct: 564 LLNGK-DVVSWNAMITGYSQHG---MGKQAAK 591



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 141/300 (47%), Gaps = 37/300 (12%)

Query: 30  NQPSLA-LLSKCTNMQNI---KQVHSQIIKTG--------------------LHNTQFAL 65
           +Q +LA L+S C N  ++   +Q+HS  +K+G                    L N +F  
Sbjct: 370 DQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVF 429

Query: 66  SKLIE---------ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIK 116
           S + E         I A S  G++  A   F+ +   N + WN ++  +    +    +K
Sbjct: 430 SSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLK 489

Query: 117 FYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMY 175
            Y  M+    V P+  T+  + + CA I A   G QI  H +K GL  +  V  + I MY
Sbjct: 490 MYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMY 549

Query: 176 AQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNEST 235
           ++ G +  A+ +F+  + +D VS+ A+ITGY+  G    A + FD+M  +     P+  +
Sbjct: 550 SKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAK--PDYIS 607

Query: 236 VVTVLSACAHMGSLELGN-WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
            V VLS C+H G ++ G  +   +   HG+   L   + ++D+  + G L +A+DL + +
Sbjct: 608 YVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKM 667



 Score = 42.0 bits (97), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 69/187 (36%), Gaps = 45/187 (24%)

Query: 71  ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNT 130
           I   S  G +S A  +F+ +   + V WN +I G+S       A K +  M+  G  P+ 
Sbjct: 546 ITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDY 605

Query: 131 YTFPFILKSCAKISAISEGK-----QIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR 185
            ++  +L  C+    + EGK         H +  GLE                       
Sbjct: 606 ISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLE----------------------- 642

Query: 186 LVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH 245
                        ++ ++      G+L +A+ L D+MP++     P       +LSAC  
Sbjct: 643 ------------HFSCMVDLLGRAGHLTEAKDLIDKMPMK-----PTAEVWGALLSACKI 685

Query: 246 MGSLELG 252
            G+ EL 
Sbjct: 686 HGNDELA 692


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 246/661 (37%), Positives = 392/661 (59%), Gaps = 6/661 (0%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           +H++++ +G       L+  + I   S   D+  A+ +F+ +  PN V W  ++ G + +
Sbjct: 39  LHARLVLSGAAAASTFLANHL-ITMYSHCADVPSAVRLFDAMPRPNLVSWTTLVSGLTQN 97

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVH 168
           S    A+  +  M  +G VP  +      ++ A ++A   G Q+H   ++LG +++ FV 
Sbjct: 98  SMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAARHAGAQLHCVGVRLGFDAELFVA 157

Query: 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
           ++L +MY+++G L  A  VF++   +DAV++TA+I GYA  G L+ A   F +M  R E 
Sbjct: 158 SNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDM--RREG 215

Query: 229 FV-PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA 287
            V  ++  + +VLSA   +    L   + S +   G    + V NAL DMY+K  D+  A
Sbjct: 216 LVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNA 275

Query: 288 RDLFESIEKR-DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
             + +  +   +V+S   +I GY  T   ++AL++F ++ +  +EPN+ TF S++  CA 
Sbjct: 276 ARVVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAM 335

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
              L+ G  +HA + K    +++  + ++L+DMY KCG I  + Q+F  + Y T  +WNA
Sbjct: 336 QALLEQGAQLHAEVIKT-SLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAWNA 394

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
            I+ LA HG   +A+  F RM   G++P+ ITFV +L+AC+HAGL+D G +YF +M   +
Sbjct: 395 AINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKDHH 454

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
            I PK +HY C++D+ GRAG  DEAE  +  M +KP+A  W SLLGACR+ G  ELGE  
Sbjct: 455 GIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKELGEIA 514

Query: 527 AKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHE 586
           A ++++LEP+N G +V LS +YA  G+W+DV  +R  + D  +KK+PG S ++     H 
Sbjct: 515 ADNMMKLEPDNTGVHVSLSGIYASLGQWEDVKAVRKLMRDNRIKKLPGFSWVDSNKKTHV 574

Query: 587 FLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIA 646
           F   D  HPQ + IYE L+E+   +++ G+VPDT  +  ++++  K+  L +HSE++A+A
Sbjct: 575 FGSEDWSHPQQEKIYEKLEELYERIKEEGYVPDTRFLPCNLEDTAKQRILRYHSERIAVA 634

Query: 647 YGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDY 706
           + LIS      I + KNLR+C +CHSA K ISK+ NR+II RD +RFHHF  G CSC DY
Sbjct: 635 FALISMPATKPIIVKKNLRICADCHSALKFISKVENRDIIVRDNSRFHHFVKGGCSCGDY 694

Query: 707 W 707
           W
Sbjct: 695 W 695



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 161/373 (43%), Gaps = 38/373 (10%)

Query: 179 GELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVT 238
           G    ARLV + ++         LIT Y+    +  A +LFD MP    N V   + V  
Sbjct: 36  GRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAMP--RPNLVSWTTLVSG 93

Query: 239 VLSACAHMGSLELGNWVC--SLIEGH-----------------------------GLGSN 267
           +     H  +L   + +C   L+                                G  + 
Sbjct: 94  LTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAARHAGAQLHCVGVRLGFDAE 153

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
           L V + L DMYSK G LV+A  +F+ + ++D ++W  MI GY    + + A++ FR M +
Sbjct: 154 LFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRR 213

Query: 328 SNIEPNDVTFL-SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
             +   D   L SVL A   L    L + IH+ + K+  +   V++  +L DMYAK  ++
Sbjct: 214 EGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFE-QEVAVRNALTDMYAKAADM 272

Query: 387 KAAEQVFD-GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
             A +V     G   + S  ++I G       +KAL +F  +  +G++P++ TF  ++  
Sbjct: 273 DNAARVVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKG 332

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           C    LL+ G Q    +I+   IS        ++D+ G+ GL   +  L K +E   D A
Sbjct: 333 CAMQALLEQGAQLHAEVIKTSLISDSFVS-STLLDMYGKCGLISLSIQLFKEIEYHTDIA 391

Query: 506 IWTSLLGACRVHG 518
            W + +     HG
Sbjct: 392 -WNAAINVLAQHG 403



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 78/181 (43%), Gaps = 2/181 (1%)

Query: 341 LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT 400
           L +C   G L LG+ +HA +  +     +  L   LI MY+ C ++ +A ++FD M    
Sbjct: 24  LQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAMPRPN 83

Query: 401 LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFN 460
           L SW  ++SGL  +     AL+ FS M   GL P          A         G Q   
Sbjct: 84  LVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAARHAGAQLHC 143

Query: 461 AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRL 520
             ++      +L     + D+  ++GL  EA  +   M  K DA  WT+++     +G L
Sbjct: 144 VGVR-LGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQK-DAVAWTAMIDGYAKNGNL 201

Query: 521 E 521
           E
Sbjct: 202 E 202



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 43/228 (18%)

Query: 30  NQPSLALLSKCTNMQNI----KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALL 85
           N+ + + + K   MQ +     Q+H+++IKT L +  F  S L+++      G +S ++ 
Sbjct: 322 NEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDM--YGKCGLISLSIQ 379

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145
           +F+ I     + WN  I   +       AI+ + RM  SG  PN  TF  +L +C+    
Sbjct: 380 LFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGL 439

Query: 146 ISEG-KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
           + EG K  ++     G+E     ++ +I+MY + G                         
Sbjct: 440 VDEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRAGR------------------------ 475

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
                  LD+A +   EMP++     PN     ++L AC   G+ ELG
Sbjct: 476 -------LDEAEKFIGEMPVK-----PNAYGWCSLLGACRMRGNKELG 511


>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
 gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
          Length = 513

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/508 (43%), Positives = 322/508 (63%), Gaps = 7/508 (1%)

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
           +N ++ G+++   P  A   Y R++  GF+P+ +TFP +LKSCAK   I EG+Q+H  ++
Sbjct: 2   FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61

Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ 217
           K+G   + +V  SL++ Y+       A  VF++  +RD VS+T +I+GY   G  D+A  
Sbjct: 62  KMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVG 121

Query: 218 LFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDM 277
           LF  M +      PN +T V+VL AC   G L +G  +  L      G  L V+NAL+DM
Sbjct: 122 LFLRMDVE-----PNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDM 176

Query: 278 YSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTF 337
           Y KCG L  A+ +F+ + ++D++SW  +I G    +  KEAL LF+ M  S IEP+ +  
Sbjct: 177 YVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIIL 236

Query: 338 LSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG 397
            SVL ACA LGALD G+W+H +ID+   K + + + T+++DMYAKCG I+ + Q+F+GM 
Sbjct: 237 TSVLSACARLGALDYGRWVHEHIDRKAIKWD-IQIGTAMVDMYAKCGCIEMSMQIFNGMP 295

Query: 398 YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
           +K + +WNA+++GLAMHG A K L LF  M+  G++P+++TF+ +L+AC H GL++ GRQ
Sbjct: 296 HKNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQ 355

Query: 458 YFNAMI-QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRV 516
           YFN M  Q Y + P+L+HYGCMVDLL RA L DEA  L K M M PD  I  +LL AC+ 
Sbjct: 356 YFNWMKGQQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMSPDVRIMGALLSACKE 415

Query: 517 HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCS 576
           +G  EL + +    +EL+  + G YVLLSN++A   RWDDV  IR  + +KG+KK PG +
Sbjct: 416 NGNTELPQEILDRFVELDSHDSGVYVLLSNIHAINQRWDDVTRIRRLMKEKGIKKPPGST 475

Query: 577 SIEVGSVVHEFLVGDKVHPQSKHIYEML 604
            IE+    HEF+VGD  HPQ K I  +L
Sbjct: 476 VIELDGKAHEFIVGDTRHPQDKRIRLLL 503



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 114/220 (51%), Gaps = 10/220 (4%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G L  A  VF+ + E + V W +II G    + P  A++ +  M  SG  P+      +L
Sbjct: 181 GCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVL 240

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
            +CA++ A+  G+ +H H+ +  ++ D  + T++++MYA+ G +E +  +FN    ++ +
Sbjct: 241 SACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVL 300

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           ++ AL+ G A  G+     +LF+EM        PNE T + +L+AC H G +  G    +
Sbjct: 301 TWNALLNGLAMHGHAYKVLELFEEMV--RVGMRPNEVTFLAILTACCHCGLVNEGRQYFN 358

Query: 258 LIEG--HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE 295
            ++G  + L   L     ++D+      L +AR L E++E
Sbjct: 359 WMKGQQYNLPPRLEHYGCMVDL------LCRARLLDEALE 392


>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
 gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
          Length = 673

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/672 (36%), Positives = 397/672 (59%), Gaps = 20/672 (2%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           VH+ +IKTG H   F +S L+ + A    G +  A  VF+ +   N V+W  ++ G+  +
Sbjct: 2   VHAHVIKTGTHEEFFVMSFLVNVYA--KCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQN 59

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVH 168
           S P VA++ +  M+ SG  P+ +T    L +C+ + +I+ GKQ HA ++K  +  D  + 
Sbjct: 60  SQPEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIG 119

Query: 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
            +L ++Y++ G L+S+   F ++  +D +S+T +I+     G      +LF EM    EN
Sbjct: 120 NALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLF--EN 177

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288
             PN+ T+ +VLS C+ + S +LG  V SL    G  SNL +TN+L+ +Y KCG + +A+
Sbjct: 178 VEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAK 237

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDY-----------KEALMLFRQMLQSNIEPNDVTF 337
           +LF  +E +++I+WN MI G+    D             EAL ++ ++ +S  +P+  T 
Sbjct: 238 NLFNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTL 297

Query: 338 LSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG 397
            S+L  C+ L AL+ G+ IHA   K+   L++V + T+L+DMY KCG+I+ A + F  M 
Sbjct: 298 SSILTVCSRLAALEQGEQIHAQTIKS-GFLSDVVVGTALVDMYDKCGSIERARKAFLDMS 356

Query: 398 YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
            +TL SW +MI+  A HG++  AL LF  M   G +P+ ITFVGVL+AC+HAG++D   +
Sbjct: 357 TRTLISWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACSHAGMVDEALE 416

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
           YF  M ++YKI P + HYGC+VD+  R G  DEA  ++K M+++P+  IW  L+  CR H
Sbjct: 417 YFEIMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRNH 476

Query: 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577
           G  ELG   A+ LL+L+P +   YV+L NMY  A RW+DV+ +R  + ++ + K+   S 
Sbjct: 477 GNEELGFYAAEQLLKLKPRSTETYVVLLNMYISAERWEDVSMVRRLMKEEKVGKLKDWSR 536

Query: 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVP-DTSEVLYDMDEEWKEGAL 636
           I +   VH F   +++H  +  ++ +L+++    +  G+   +  EV+ D +EE +E A 
Sbjct: 537 ISIKGEVHSFKTNNRLHNHNAELHTLLNDLVDRAKSLGYEQLENMEVIDDEEEEAEEKAF 596

Query: 637 S---HHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRF 693
           S   +HSEKLA+ +GL++T  G  IR++K++ +C +CH   K++S    R II +D  R 
Sbjct: 597 SSAVYHSEKLAVTFGLLNTPIGAPIRVIKSVTMCKDCHDFMKVVSSQTTRHIIIKDGKRL 656

Query: 694 HHFKDGNCSCND 705
           H F +G CSC D
Sbjct: 657 HKFVNGQCSCAD 668



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 127/289 (43%), Gaps = 27/289 (9%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L + S+   ++  +Q+H+Q IK+G  +     + L+++      G +  A   F  +   
Sbjct: 301 LTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDM--YDKCGSIERARKAFLDMSTR 358

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
             + W ++I   +       A++ +  M L+GF PN  TF  +L +C+    + E  + +
Sbjct: 359 TLISWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACSHAGMVDEALE-Y 417

Query: 154 AHVLKLGLESDPFV--HTSLINMYAQNGELESARLVFNKSSLR-DAVSYTALITGYASRG 210
             +++   +  P +  +  L++M+ + G L+ A  V  +  +  +   +  LI G  + G
Sbjct: 418 FEIMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRNHG 477

Query: 211 YLD----DARQLFDEMPIREENFVP-----------NESTVVTVLSACAHMGSLELGNWV 255
             +     A QL    P   E +V             + ++V  L     +G L+  +W 
Sbjct: 478 NEELGFYAAEQLLKLKPRSTETYVVLLNMYISAERWEDVSMVRRLMKEEKVGKLK--DWS 535

Query: 256 CSLIEG--HGLGSNLHVTNALIDMYSKCGDLV-KARDL-FESIEKRDVI 300
              I+G  H   +N  + N   ++++   DLV +A+ L +E +E  +VI
Sbjct: 536 RISIKGEVHSFKTNNRLHNHNAELHTLLNDLVDRAKSLGYEQLENMEVI 584


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/652 (35%), Positives = 384/652 (58%), Gaps = 42/652 (6%)

Query: 97  IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYT------------FPFILKSCAKIS 144
           +++  +R  S+  S   +++ +  +   G +   Y             F  +L+SC K+ 
Sbjct: 17  LYSFTVRSLSMKISSSASLQEFTSLCNDGRIKQAYDTFTSEIWSDPSLFSHLLQSCIKLG 76

Query: 145 AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
           ++  GKQ+H+ ++  G   D F+   L+N Y++ G+ +S+ ++F+    R+ +S+  LI 
Sbjct: 77  SLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMPRRNVMSFNILIN 136

Query: 205 GYASRGYLDDARQLFDEMPIR---------------EEN--------------FVPNEST 235
           GY   G L+ A++LFDEM  R               E N              F+P+E T
Sbjct: 137 GYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFT 196

Query: 236 VVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE 295
           + +VL  CA + SL  G  V + +   G   +  V ++L  MY K G L     L +S+ 
Sbjct: 197 LGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMP 256

Query: 296 KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKW 355
            R V++WN +I G       +E L  +  M  +   P+ +TF+SVL AC+ L  L  G+ 
Sbjct: 257 IRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQ 316

Query: 356 IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHG 415
           IHA + K     + +++ +SLI MY++ G ++ + + F       +  W++MI+    HG
Sbjct: 317 IHAEVIKAGAS-SVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHG 375

Query: 416 KADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY 475
           + ++AL LF +M    ++ +++TF+ +L AC+H+GL + G +YF+ M++ YK+ P+++HY
Sbjct: 376 RGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHY 435

Query: 476 GCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEP 535
            C+VDLLGRAG  +EAE ++++M ++PD  IW +LL AC++H   E+ E +++ +++L+P
Sbjct: 436 TCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAERISEEIIKLDP 495

Query: 536 ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHP 595
            +  +YVLLSN++A A  W +V+ IR  + D+ ++K PG S +E+ ++VH+F +GDK HP
Sbjct: 496 LDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNLVHQFSMGDKSHP 555

Query: 596 QSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPG 655
           Q   I   L E+ + L++ G+VP+   VL+DMD E KE  L+HHSEK AIA+ L++T   
Sbjct: 556 QYFEIDLYLKELMSELKQHGYVPELGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSEN 615

Query: 656 TTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
             IR++KNLRVC +CH+A K IS+I NREII RD +RFHHFKDG CSC +YW
Sbjct: 616 VPIRVMKNLRVCDDCHNAIKCISRIRNREIIVRDASRFHHFKDGECSCGNYW 667



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 125/448 (27%), Positives = 208/448 (46%), Gaps = 39/448 (8%)

Query: 32  PSL--ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIE---------------- 70
           PSL   LL  C  + ++   KQVHS II +G    +F  + L+                 
Sbjct: 62  PSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFS 121

Query: 71  -------------ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKF 117
                        I      GDL  A  +F+ + E N   WN +I G +       A+  
Sbjct: 122 NMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSL 181

Query: 118 YVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ 177
           +  M   GF+P+ +T   +L+ CA + ++  G+++HA +LK G E    V +SL +MY +
Sbjct: 182 FKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIK 241

Query: 178 NGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVV 237
           +G L     +     +R  V++  LI G A  G  ++    ++ M +    F P++ T V
Sbjct: 242 SGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKM--AGFRPDKITFV 299

Query: 238 TVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR 297
           +VLSAC+ + +L  G  + + +   G  S L V ++LI MYS+ G L  +   F   E  
Sbjct: 300 SVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENF 359

Query: 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357
           DV+ W+ MI  Y      +EAL LF QM    +E N+VTFLS+L AC++ G  + G    
Sbjct: 360 DVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYF 419

Query: 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA-SWNAMISGLAMHGK 416
             + K ++    +  +T ++D+  + G ++ AE +   M  +     W  +++   +H +
Sbjct: 420 DLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKE 479

Query: 417 ADKALSLFSRMIGEGLQPDDITFVGVLS 444
           A+ A  +   +I   L P D     +LS
Sbjct: 480 AEMAERISEEII--KLDPLDAASYVLLS 505


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 242/620 (39%), Positives = 357/620 (57%), Gaps = 9/620 (1%)

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFP--FILKSCAKISAISEGK 150
           P  V +   I G +  + P+ A+  +  M+  G  PN +TFP  F   +CA     + G 
Sbjct: 74  PTVVSFTAFISGAAQHARPLAALSAFAAMLRVGLRPNDFTFPSAFKAAACAPPRCSTVGP 133

Query: 151 QIHAHVLKLG-LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           QIHA  L+ G L  DPFV  + ++MY + G L  AR +F +   R+ +++ A++T     
Sbjct: 134 QIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVID 193

Query: 210 GY-LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
           G  L+  +  F    +RE   +PN  +V    +ACA    L LG      +   G   ++
Sbjct: 194 GRPLETFKAYFG---LREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDV 250

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
            V+NA++D Y KC    KAR +F+ +  R+ +SW  MI  Y      ++AL ++     +
Sbjct: 251 SVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNT 310

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
             EP D    SVL  CA L  L+ G+ +HA   ++    N + + ++L+DMY KCG ++ 
Sbjct: 311 GEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDAN-IFVASALVDMYGKCGGVED 369

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG-LQPDDITFVGVLSACN 447
           AEQVF  M  + L +WNAMI G A  G A  AL++F  MI  G   P+ IT V V++AC+
Sbjct: 370 AEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACS 429

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
             GL   G + F+ M + + + P+ +HY C+VDLLGRAG+ + A  +++ M M+P  ++W
Sbjct: 430 RGGLTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSISVW 489

Query: 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
            +LLGAC++HG+ ELG   ++ L EL+P++ G +VLLSNM A AGRW +   +R  + + 
Sbjct: 490 GALLGACKMHGKTELGRIASEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNV 549

Query: 568 GMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
           G+KK PGCS I   +VVH F   D  H ++  I  +L ++   ++ SG++PDT   LYD+
Sbjct: 550 GIKKEPGCSWITWKNVVHVFYAKDTKHDRNSEIQALLAKLKKQMQASGYMPDTQYSLYDV 609

Query: 628 DEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIA 687
           +EE KE  +  HSEKLA+A+GLI   P   IRI KNLR+C +CH A K +S I  REII 
Sbjct: 610 EEEEKETEVFQHSEKLALAFGLIHIPPSVPIRITKNLRICVDCHRAFKFVSGIVGREIIV 669

Query: 688 RDRNRFHHFKDGNCSCNDYW 707
           RD NRFH+FK   CSC DYW
Sbjct: 670 RDNNRFHYFKQFECSCKDYW 689



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 171/343 (49%), Gaps = 4/343 (1%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G L  A  +FE +   N + WN ++    +   P+   K Y  +  +G +PN  +     
Sbjct: 163 GCLGLARRLFEEMPNRNVIAWNAVMTNAVIDGRPLETFKAYFGLREAGGMPNVVSVCAFF 222

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
            +CA    +S G+Q H  V+  G + D  V  ++++ Y +      AR VF+   +R++V
Sbjct: 223 NACAGAMFLSLGEQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSV 282

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           S+ ++I  YA  G  +DA  ++  M  R     P +  V +VL+ CA +  L  G  + +
Sbjct: 283 SWCSMIVAYAQHGAEEDALAVY--MGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRALHA 340

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
           +     + +N+ V +AL+DMY KCG +  A  +F  + +R++++WN MIGGY H  D + 
Sbjct: 341 VAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQN 400

Query: 318 ALMLFRQMLQS-NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           AL +F  M++S    PN +T ++V+ AC+  G    G  +   + +          +  +
Sbjct: 401 ALAVFDAMIRSGGTSPNHITLVNVITACSRGGLTKDGYELFDTMRERFGVEPRTEHYACV 460

Query: 377 IDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKAD 418
           +D+  + G  + A ++   M  + +++ W A++    MHGK +
Sbjct: 461 VDLLGRAGMEERAYEIIQRMPMRPSISVWGALLGACKMHGKTE 503



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 108/250 (43%), Gaps = 4/250 (1%)

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
           L+++YSK      A     S     V+S+   I G    +    AL  F  ML+  + PN
Sbjct: 51  LVNLYSKLDLPAAAASALASDPNPTVVSFTAFISGAAQHARPLAALSAFAAMLRVGLRPN 110

Query: 334 DVTFLSVL--PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           D TF S     ACA      +G  IHA   +      +  +  + +DMY K G +  A +
Sbjct: 111 DFTFPSAFKAAACAPPRCSTVGPQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARR 170

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           +F+ M  + + +WNA+++   + G+  +    +  +   G  P+ ++     +AC  A  
Sbjct: 171 LFEEMPNRNVIAWNAVMTNAVIDGRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMF 230

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           L +G Q F+  +        +     MVD  G+     +A A+   M ++ ++  W S++
Sbjct: 231 LSLGEQ-FHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVR-NSVSWCSMI 288

Query: 512 GACRVHGRLE 521
            A   HG  E
Sbjct: 289 VAYAQHGAEE 298


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 241/577 (41%), Positives = 355/577 (61%), Gaps = 9/577 (1%)

Query: 132 TFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKS 191
           T+  ++K C    A+ + + +H HV   G E   F+  +LINMY + G L+ AR +F++ 
Sbjct: 18  TYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEM 77

Query: 192 SLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL 251
             R+ VS+T +I+ Y++      A      + +  E   PN  T  +VL AC   G L L
Sbjct: 78  PDRNVVSWTTMISAYSNSNLNHKALDFL--ILMLREGVRPNMYTYSSVLRACD--GLLNL 133

Query: 252 GNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311
                S+++  GL S++ V +ALID YSK G+   A ++F  +   D++ WN +IGG+  
Sbjct: 134 RQLHGSILKV-GLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQ 192

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
            SD  E L L+++M +++   +  T  SVL AC  L  L+LG+ +H ++ K  Q L    
Sbjct: 193 NSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKYDQDL---I 249

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGM-GYKTLASWNAMISGLAMHGKADKALSLFSRMIGE 430
           L  +L+DMY KCG+++ A  +F  M   K + SW+ MI+GLA +G +  AL LF  M  +
Sbjct: 250 LNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSK 309

Query: 431 GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
           G +P+ IT +GVL AC+HAGL++ G  YF +M + + I P  +HYGC++DLLGRAG  DE
Sbjct: 310 GPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDE 369

Query: 491 AEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAG 550
           A  L+  M  +PDA  W  LLGACRVH  ++L    AK +L+L+P + G Y+LLSN+YA 
Sbjct: 370 AVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYAN 429

Query: 551 AGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDAL 610
           + +W+DVA +R ++  +G+KK PGCS IEV   VH F++GD  HP+ + I   L ++   
Sbjct: 430 SQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHPRIEEIKRELSQLIQR 489

Query: 611 LEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNC 670
           L + G+VPDT+ VL D++ E  E +L +HSEKLAI +GL+S     TI I KNLR+CG+C
Sbjct: 490 LMRLGYVPDTNFVLQDLEGEQMEDSLQYHSEKLAIVFGLMSLPNQKTIHIRKNLRICGDC 549

Query: 671 HSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           H   KL+S++ NR I+ RD  R+HHF+ G CSC DYW
Sbjct: 550 HIFAKLVSQLENRVIVIRDPIRYHHFRGGVCSCGDYW 586



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 119/382 (31%), Positives = 197/382 (51%), Gaps = 13/382 (3%)

Query: 43  MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNII 102
           +Q  + VH  +   G     F ++ LI +     FG L  A  +F+ + + N V W  +I
Sbjct: 32  VQQARLVHEHVFSNGYEPKTFLINTLINMYV--KFGLLDEARNLFDEMPDRNVVSWTTMI 89

Query: 103 RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE 162
             +S S+    A+ F + M+  G  PN YT+  +L++C  +  +   +Q+H  +LK+GLE
Sbjct: 90  SAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNL---RQLHGSILKVGLE 146

Query: 163 SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
           SD FV ++LI+ Y++ GE   A  VFN+    D V + ++I G+A     D+   L+  M
Sbjct: 147 SDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRM 206

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
             +  +FV ++ST+ +VL AC  +  LELG  V   +  +    +L + NAL+DMY KCG
Sbjct: 207 --KRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKY--DQDLILNNALLDMYCKCG 262

Query: 283 DLVKARDLFES-IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
            L  A  LF   + ++DVISW+ MI G        +AL LF  M     +PN +T L VL
Sbjct: 263 SLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVL 322

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLN-NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT 400
            AC++ G ++ G W +    K H  ++     +  +ID+  + G +  A ++   M ++ 
Sbjct: 323 FACSHAGLVNDG-WYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEP 381

Query: 401 LA-SWNAMISGLAMHGKADKAL 421
            A +W  ++    +H   D A+
Sbjct: 382 DAVTWRILLGACRVHKNVDLAI 403



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 181/367 (49%), Gaps = 40/367 (10%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           ++L  C  + N++Q+H  I+K GL +  F  S LI+    S  G+   AL VF  +   +
Sbjct: 122 SVLRACDGLLNLRQLHGSILKVGLESDVFVRSALID--TYSKLGEQHDALNVFNEMITGD 179

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
            V+WN+II G + +S     +  Y RM  + FV +  T   +L++C  ++ +  G+Q+H 
Sbjct: 180 LVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHV 239

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK-SSLRDAVSYTALITGYASRGYLD 213
           HVLK   + D  ++ +L++MY + G LE A L+F +  + +D +S++ +I G A  G+  
Sbjct: 240 HVLK--YDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSA 297

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVTN 272
           DA +LF+ M  + +   PN  T++ VL AC+H G +  G  +  S+ E  G+        
Sbjct: 298 DALKLFEAM--KSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYG 355

Query: 273 ALIDMYSKCGDLVKARDLFESIEKR-DVISWNVMIGGYTHTSDYKEALMLFRQMLQ---- 327
            +ID+  + G L +A  L   +    D ++W +++G      +   A+   +++L+    
Sbjct: 356 CIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPA 415

Query: 328 --------SNIEPNDVTFLSVL--------------PACAYLGALDLGKWIHAYI--DKN 363
                   SNI  N   +  V               P C++   +++ K +HA+I  D +
Sbjct: 416 DAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSW---IEVSKQVHAFILGDNS 472

Query: 364 HQKLNNV 370
           H ++  +
Sbjct: 473 HPRIEEI 479



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 117/270 (43%), Gaps = 32/270 (11%)

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           M ++ +  + +T+  ++  C   GA+   + +H ++  N  +     L  +LI+MY K G
Sbjct: 7   MHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTF-LINTLINMYVKFG 65

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
            +  A  +FD M  + + SW  MIS  +      KAL     M+ EG++P+  T+  VL 
Sbjct: 66  LLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLR 125

Query: 445 ACN--------HAGLLDIGRQ----YFNAMIQDYK---------------ISPKLQHYGC 477
           AC+        H  +L +G +      +A+I  Y                I+  L  +  
Sbjct: 126 ACDGLLNLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNS 185

Query: 478 MVDLLGRAGLFDEAEALLKTM---EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534
           ++    +    DE   L K M   +   D +  TS+L AC     LELG  V  H+L+ +
Sbjct: 186 IIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKYD 245

Query: 535 PENPGAYVLLSNMYAGAGRWDDVATIRTRL 564
            +      LL +MY   G  +D   + TR+
Sbjct: 246 QDLILNNALL-DMYCKCGSLEDANLLFTRM 274


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/478 (45%), Positives = 318/478 (66%), Gaps = 3/478 (0%)

Query: 232 NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLF 291
           N+ T VTVLS     GSLE G  V S + G GL  ++ V  AL++MY KC  + +AR  F
Sbjct: 9   NKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEEARAAF 68

Query: 292 ESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM--LQSNIEPNDVTFLSVLPACAYLGA 349
           E I + +V+SW+ M+  Y      + AL L+R+M   +  + PN VTF+++L AC++LGA
Sbjct: 69  EKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLLDACSFLGA 128

Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
           L  G+ IHA + +     + V +  +L++ Y +CG++  A+ VFDGM  + + SW++MIS
Sbjct: 129 LAEGRKIHAAVAERGFDTDLV-VCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMIS 187

Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS 469
             A  G+ D+A+ L+ RM+ EG  PDDI F+ VL AC+++G+++    +F +++ D ++ 
Sbjct: 188 AFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVE 247

Query: 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKH 529
           P L+HY CMVD+LGRAG   +AE LL+ M   P   ++ ++L AC+++  +E GE+ A+ 
Sbjct: 248 PTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEV 307

Query: 530 LLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLV 589
           + EL+PEN   Y+ L+N+Y+ A R  D A IR  + ++G+KK PGCS IEV   VHEF+ 
Sbjct: 308 VFELDPENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIA 367

Query: 590 GDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGL 649
           GDK+HPQ   IY  +  +   ++++G+  DT  VL D++E+ KE  L +HSEKLAIA+GL
Sbjct: 368 GDKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAFGL 427

Query: 650 ISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           IST PG  +RIVKNLRVC +CH+ATK+ISK+  REI+ RD NRFHHF DG CSCNDYW
Sbjct: 428 ISTPPGAPLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFLDGMCSCNDYW 485



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 148/278 (53%)

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           M + G   N  T+  +L       ++ EG+++H+ V   GLE D  V T+L+NMY +   
Sbjct: 1   MEIRGVERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQS 60

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
           +E AR  F K S  + VS++A++  YA  G+   A +L+ EM    +   PN  T +T+L
Sbjct: 61  VEEARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLL 120

Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVI 300
            AC+ +G+L  G  + + +   G  ++L V NAL++ Y +CG L  A+ +F+ + +RDVI
Sbjct: 121 DACSFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVI 180

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           SW+ MI  +       EA+ L+ +ML     P+D+ F+SVL AC+  G ++        I
Sbjct: 181 SWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSI 240

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
             + Q    +  +  ++D+  + G ++ AE +   M +
Sbjct: 241 VGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPF 278



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 135/253 (53%), Gaps = 7/253 (2%)

Query: 42  NMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNI 101
           +++  ++VHS++   GL       + L+ +        +  A   FE I  PN V W+ +
Sbjct: 25  SLEEGRRVHSRVAGAGLEVDVIVGTALVNM--YGKCQSVEEARAAFEKISRPNVVSWSAM 82

Query: 102 IRGHSLSSSPVVAIKFYVRM--ILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKL 159
           +  ++ +    +A++ Y  M     G  PN  TF  +L +C+ + A++EG++IHA V + 
Sbjct: 83  LAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLLDACSFLGALAEGRKIHAAVAER 142

Query: 160 GLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLF 219
           G ++D  V  +L+N Y + G L  A++VF+    RD +S++++I+ +A RG +D+A +L+
Sbjct: 143 GFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELY 202

Query: 220 DEMPIREENFVPNESTVVTVLSACAHMGSLEL-GNWVCSLIEGHGLGSNLHVTNALIDMY 278
             M    E  +P++   ++VL AC++ G +E  G++  S++    +   L     ++D+ 
Sbjct: 203 HRML--SEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVL 260

Query: 279 SKCGDLVKARDLF 291
            + G L  A DL 
Sbjct: 261 GRAGKLRDAEDLL 273


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/542 (43%), Positives = 342/542 (63%), Gaps = 8/542 (1%)

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           F+   LINMY + G L  A+ VF+K   R+ VS+T +I+ Y++    D A +    M   
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLML-- 58

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
            E   PN  T  +VL AC   G   L    C +I+  GL S++ V +ALID+YS+ G+L 
Sbjct: 59  REGVRPNMFTYSSVLRACD--GLFNLRQLHCCIIK-IGLDSDVFVRSALIDVYSRWGELE 115

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
            A  +F+ +   D++ W+ +I G+   SD  EAL LF++M ++       T  SVL AC 
Sbjct: 116 NALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACT 175

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
            L  L+LG+ +H ++ K  Q L    L  +L+DMY KCG+++ A  VF  M  K + SW+
Sbjct: 176 GLALLELGRQVHVHVLKYDQDL---ILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWS 232

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
            MI+GLA +G + +AL LF  M   G++P+ +T VGVL AC+HAGL++ G  YF++M + 
Sbjct: 233 TMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKEL 292

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
           + I P  +HYGCM+DLLGRAG   EA  L+  ME +PDA  W +LL ACRVH  +++   
Sbjct: 293 FGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIH 352

Query: 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVH 585
            AK +L L+P++ G YVLLSN+YA   RW+DVA +R  + ++G+KK PGCS IEV   +H
Sbjct: 353 AAKQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIH 412

Query: 586 EFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAI 645
            F++GD+ HPQ + I   L+++   L   G+VPDT+ VL D++ E  + +L +HSEKLAI
Sbjct: 413 AFILGDRSHPQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHSEKLAI 472

Query: 646 AYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCND 705
            +GL+S   G TIRI KNLR+CG+CH  TKL++K+  R I+ RD  R+HHF+DG CSC D
Sbjct: 473 VFGLMSLPRGQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCSCGD 532

Query: 706 YW 707
           +W
Sbjct: 533 FW 534



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 198/367 (53%), Gaps = 22/367 (5%)

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
           FG L  A  VF+ + + N V W  +I  +S +     A++F V M+  G  PN +T+  +
Sbjct: 13  FGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPNMFTYSSV 72

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L++C  +  +   +Q+H  ++K+GL+SD FV ++LI++Y++ GELE+A  VF++    D 
Sbjct: 73  LRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDL 129

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           V ++++I G+A     D+A +LF  M  +   F+  ++T+ +VL AC  +  LELG  V 
Sbjct: 130 VVWSSIIAGFAQNSDGDEALRLFKRM--KRAGFLAQQTTLTSVLRACTGLALLELGRQVH 187

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
             +  +    +L + NAL+DMY KCG L  A  +F  + ++DVISW+ MI G       K
Sbjct: 188 VHVLKY--DQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSK 245

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG-KWIHAY-----IDKNHQKLNNV 370
           EAL LF  M    I+PN VT + VL AC++ G ++ G  + H+      ID   +     
Sbjct: 246 EALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREH---- 301

Query: 371 SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA-SWNAMISGLAMHGKADKALSLFSRMIG 429
             +  +ID+  + G +  A  + + M  +  A +W A+++   +H   D A+    +++ 
Sbjct: 302 --YGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQIL- 358

Query: 430 EGLQPDD 436
             L P D
Sbjct: 359 -RLDPQD 364



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 189/368 (51%), Gaps = 39/368 (10%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           ++L  C  + N++Q+H  IIK GL +  F  S LI++   S +G+L  AL VF+ +   +
Sbjct: 71  SVLRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDV--YSRWGELENALRVFDEMVTGD 128

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
            V+W++II G + +S    A++ + RM  +GF+    T   +L++C  ++ +  G+Q+H 
Sbjct: 129 LVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHV 188

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
           HVLK   + D  ++ +L++MY + G LE A  VF +   +D +S++ +I G A  GY  +
Sbjct: 189 HVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKE 246

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVTNA 273
           A +LF+ M +      PN  T+V VL AC+H G +E G  +  S+ E  G+         
Sbjct: 247 ALKLFESMKVL--GIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGC 304

Query: 274 LIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ----- 327
           +ID+  + G L +A DL   +E + D ++W  ++       +   A+   +Q+L+     
Sbjct: 305 MIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQD 364

Query: 328 -------SNIEPNDVTFLSVL--------------PACAYLGALDLGKWIHAYI--DKNH 364
                  SNI  N   +  V               P C++   +++ K IHA+I  D++H
Sbjct: 365 AGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSW---IEVSKQIHAFILGDRSH 421

Query: 365 QKLNNVSL 372
            ++  +++
Sbjct: 422 PQIREINI 429


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 228/536 (42%), Positives = 343/536 (63%), Gaps = 5/536 (0%)

Query: 174 MYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
           MYA+ G     R +F++ S +D V +TA+IT Y      ++A  LF +M  +EE  + + 
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQ-QEEGLLADS 59

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
             VV+V SA   +G ++  + V        L   L V N+++ M++KCG+  KAR +F+ 
Sbjct: 60  IAVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDM 119

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
           + +RDVISWN M+ GYT      EAL+LF +M  S+ +P  VT L ++ ACAYLG   LG
Sbjct: 120 MMERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLG 179

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM--GYKTLASWNAMISGL 411
           +  H +I  +  +++  +L  +L+DMYAKCG+++ A  +F+G+    +   SWN +ISG 
Sbjct: 180 RKFHDFIVDSRMEID-TNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGY 238

Query: 412 AMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK 471
            MHG   +AL LFSRM  EG++P+  TF  +LSAC+HAGL+D GR+ F A ++   ++ +
Sbjct: 239 GMHGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCF-AEMKRLSVTLE 297

Query: 472 LQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLL 531
            +H+ C+VD+LGRAGL  EA  L+K M   P   +W +LL AC++HG +ELG++ A +LL
Sbjct: 298 DKHHACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLL 357

Query: 532 ELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGD 591
           +LEP + G YVL+SN+YA + +W +V  +R  + +KG+KK    S IE G  +  F   D
Sbjct: 358 QLEPNHTGYYVLMSNIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIEYGKDILGFHTAD 417

Query: 592 KVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLIS 651
           + +P    +Y+ ++ +   ++ +G+VPD S  L+D++EE KE  L++HSEKLA+A+G++ 
Sbjct: 418 QENPYRHEVYKKMESLAIEMKMAGYVPDLSCALHDVEEEDKERMLNYHSEKLAVAFGVLK 477

Query: 652 TKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
             PG  IR+ KNLRVC +CHSA K IS I+ R+II RD NRFHHF+ G CSC DYW
Sbjct: 478 IDPGMVIRVTKNLRVCNDCHSAFKYISHIYQRKIIVRDANRFHHFQGGTCSCKDYW 533



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 183/363 (50%), Gaps = 9/363 (2%)

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILS-GFVPNTYTFPFILKSCAKIS 144
           +F+ +   + V W  +I  +  +  P  A+  + +M    G + ++     +  +  ++ 
Sbjct: 14  IFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSIAVVSVASAVGQLG 73

Query: 145 AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
            +     +H +  +  L  +  V  S++ M+ + G  E ARLVF+    RD +S+ ++++
Sbjct: 74  DVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMMERDVISWNSMLS 133

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
           GY   G   +A  LFDEM  R+ +  P   T + ++SACA++G   LG      I    +
Sbjct: 134 GYTQNGQATEALLLFDEM--RDSDCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSRM 191

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESI--EKRDVISWNVMIGGYTHTSDYKEALMLF 322
             + +++NAL+DMY+KCGDL KA DLF  I   +R+  SWNV+I GY      KEAL LF
Sbjct: 192 EIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELF 251

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
            +M +  +EPN  TF S+L AC++ G +D G+   A + +    L +      ++DM  +
Sbjct: 252 SRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKRLSVTLED-KHHACVVDMLGR 310

Query: 383 CGNIKAAEQVFDGM-GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVG 441
            G ++ A  +   M    +   W A++    +HG  +   +  S ++   L+P+   +  
Sbjct: 311 AGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLL--QLEPNHTGYYV 368

Query: 442 VLS 444
           ++S
Sbjct: 369 LMS 371



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 132/270 (48%), Gaps = 17/270 (6%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF-------GDLSYALLV 86
           +++ S    + ++K  H+      +H   F  S + E+C  +         G+   A LV
Sbjct: 63  VSVASAVGQLGDVKNAHT------VHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLV 116

Query: 87  FETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAI 146
           F+ + E + + WN+++ G++ +     A+  +  M  S   P   T   ++ +CA +   
Sbjct: 117 FDMMMERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFR 176

Query: 147 SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN--KSSLRDAVSYTALIT 204
             G++ H  ++   +E D  +  +L++MYA+ G+LE A  +FN    + R+A S+  LI+
Sbjct: 177 HLGRKFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLIS 236

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
           GY   G+  +A +LF  M  +EE   PN  T  ++LSAC+H G ++ G    + ++   +
Sbjct: 237 GYGMHGHGKEALELFSRM--QEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKRLSV 294

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESI 294
                    ++DM  + G L +A DL + +
Sbjct: 295 TLEDKHHACVVDMLGRAGLLQEAFDLIKEM 324


>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
 gi|194689034|gb|ACF78601.1| unknown [Zea mays]
 gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
          Length = 606

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 248/583 (42%), Positives = 356/583 (61%), Gaps = 20/583 (3%)

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNG----ELESARLVFNK-S 191
           L  C  +  ++   Q+HA  +K GL + P + T L+ +    G     L  AR VF++ +
Sbjct: 32  LPHCTSLRGLA---QLHAAAVKAGLAAHPALVTRLLTLCTGPGAGPAHLAYARQVFDRVT 88

Query: 192 SLRDAVSYTALITGYASRGYLDDAR-----QLFDEMPIREENFVPNESTVVTVLSACAHM 246
              DAV Y  L+ GYA       +      ++F  M   EE   P+  T V++L ACA  
Sbjct: 89  QPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRM--LEEGVAPDTYTFVSLLKACAAA 146

Query: 247 GSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMI 306
            + E G    ++    G   + +V   LI+MY++CGD   AR  F   +   V+S+N MI
Sbjct: 147 RAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAARVTFGRADGDCVVSYNAMI 206

Query: 307 GGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK-NHQ 365
                +S   EAL+LFR+M    + P  VT +SVL ACA LGAL LG+W+H Y+ K    
Sbjct: 207 AAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLSACALLGALQLGRWLHDYVRKLGLG 266

Query: 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
            L  VS  T+L+DMYAKCG+++ A  VF GM  +   +W+ MI   A HG   +A+SLF 
Sbjct: 267 SLVKVS--TALVDMYAKCGSLEDAIAVFQGMESRDRQAWSVMIVAYANHGYGREAISLFE 324

Query: 426 RMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485
            M  +G++PDDITF+G+L AC+H+GL+  G +YF+ M +D+ I P ++HYGC+ DLL R+
Sbjct: 325 EMKKQGMKPDDITFLGLLYACSHSGLVSEGLRYFDDM-KDHGIVPGIKHYGCVTDLLARS 383

Query: 486 GLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545
           G  + A   +  + + P   +W +LL AC  HG +ELG+ V + +LEL+  + G YV+ S
Sbjct: 384 GQLERAYKFIDELPINPTPILWRTLLSACGGHGDVELGKRVFERILELDDSHGGDYVIFS 443

Query: 546 NMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLD 605
           N+ A  G W+++  +R  ++DKG+ KVPGCSSIE+ + VHEF  GD  HP+S+   +M+D
Sbjct: 444 NLCANTGYWEEMNRVRKLMSDKGVVKVPGCSSIEIDNTVHEFFAGDGRHPKSQEARKMVD 503

Query: 606 EIDALLEKSGFVPDTSEVLY-DMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNL 664
           E+   L+  G++PDTS V + +M EE K  +L +HSEKLAIA+GL++T PG T+R+VKNL
Sbjct: 504 EVIDQLKLVGYIPDTSHVFHVEMGEEEKAISLKYHSEKLAIAFGLLNTAPGATLRVVKNL 563

Query: 665 RVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           RVC +CHS  K +S +FNR II RD NRFHHF+ G CSC DYW
Sbjct: 564 RVCPDCHSMAKFVSMVFNRRIILRDLNRFHHFERGICSCGDYW 606



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 146/439 (33%), Positives = 239/439 (54%), Gaps = 21/439 (4%)

Query: 1   MALPPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHN 60
           M+  P + T +P +    P S  P       P L+ L  CT+++ + Q+H+  +K GL  
Sbjct: 1   MSSAPLTATPAPLLPANKPKSAAP-----QHPLLSHLPHCTSLRGLAQLHAAAVKAGLAA 55

Query: 61  TQFALSKLIEICAVSPFGD--LSYALLVFETIREPNQVIW-NNIIRGHS-----LSSSPV 112
               +++L+ +C     G   L+YA  VF+ + +P+  +W N ++RG++      SSS  
Sbjct: 56  HPALVTRLLTLCTGPGAGPAHLAYARQVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSA 115

Query: 113 VAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLI 172
            A++ +VRM+  G  P+TYTF  +LK+CA   A   G+Q HA  +KLG     +V  +LI
Sbjct: 116 AAVRVFVRMLEEGVAPDTYTFVSLLKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLI 175

Query: 173 NMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPN 232
           NMYA+ G+  +AR+ F ++     VSY A+I          +A  LF EM  +  N  P 
Sbjct: 176 NMYAECGDARAARVTFGRADGDCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGLN--PT 233

Query: 233 ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFE 292
             TV++VLSACA +G+L+LG W+   +   GLGS + V+ AL+DMY+KCG L  A  +F+
Sbjct: 234 PVTVISVLSACALLGALQLGRWLHDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQ 293

Query: 293 SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL 352
            +E RD  +W+VMI  Y +    +EA+ LF +M +  ++P+D+TFL +L AC++ G +  
Sbjct: 294 GMESRDRQAWSVMIVAYANHGYGREAISLFEEMKKQGMKPDDITFLGLLYACSHSGLVSE 353

Query: 353 GKWIHAYID--KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMIS 409
           G     Y D  K+H  +  +  +  + D+ A+ G ++ A +  D +    T   W  ++S
Sbjct: 354 GL---RYFDDMKDHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLS 410

Query: 410 GLAMHGKADKALSLFSRMI 428
               HG  +    +F R++
Sbjct: 411 ACGGHGDVELGKRVFERIL 429


>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Glycine max]
          Length = 579

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/564 (41%), Positives = 351/564 (62%), Gaps = 12/564 (2%)

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESA---RLVFNKSSLRDAVSYTALITGYA 207
           QIHAH+++  L   P V    ++  A +G L+ A   +  F + S      Y  +I   +
Sbjct: 21  QIHAHIIRTTLIQYPTVSLQFLSRIALSGPLQDASYSQRFFGQLSHPLVSHYNTMIRACS 80

Query: 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV-CSLI-EGHGLG 265
                     L+ +M  R      +  +    + +C     L  G  V C++  +GH   
Sbjct: 81  MSDSPQKGLLLYRDM--RRRGIAADPLSSSFAVKSCIRFLYLPGGVQVHCNIFKDGHQWD 138

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
           + L    A++D+YS C     A  +F+ +  RD ++WNVMI      +  ++AL LF  M
Sbjct: 139 TLL--LTAVMDLYSLCQRGGDACKVFDEMPHRDTVAWNVMISCCIRNNRTRDALSLFDVM 196

Query: 326 LQSN--IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383
             S+   EP+DVT L +L ACA+L AL+ G+ IH YI +   + + ++L  SLI MY++C
Sbjct: 197 QGSSYKCEPDDVTCLLLLQACAHLNALEFGERIHGYIMERGYR-DALNLCNSLISMYSRC 255

Query: 384 GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
           G +  A +VF GMG K + SW+AMISGLAM+G   +A+  F  M+  G+ PDD TF GVL
Sbjct: 256 GCLDKAYEVFKGMGNKNVVSWSAMISGLAMNGYGREAIEAFEEMLRIGVLPDDQTFTGVL 315

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
           SAC+++G++D G  +F+ M +++ ++P + HYGCMVDLLGRAGL D+A  L+ +M +KPD
Sbjct: 316 SACSYSGMVDEGMSFFHRMSREFGVTPNVHHYGCMVDLLGRAGLLDKAYQLIMSMVVKPD 375

Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563
           + +W +LLGACR+HG + LGE V  HL+EL+ +  G YVLL N+Y+ AG W+ VA +R  
Sbjct: 376 STMWRTLLGACRIHGHVTLGERVIGHLIELKAQEAGDYVLLLNIYSSAGHWEKVAEVRKL 435

Query: 564 LNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEV 623
           + +K ++  PGCS+IE+   VHEF+V D  H +++ IYE LDEI+  L  +G+V + S  
Sbjct: 436 MKNKSIQTTPGCSTIELKGAVHEFVVDDVSHSRNREIYETLDEINHQLRIAGYVVELSSE 495

Query: 624 LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNR 683
           L+ MD++ K   LSHHSEKLA+A+G+++T PGT +R+  NLRVC +CH+  KL S ++NR
Sbjct: 496 LHKMDDKEKGYVLSHHSEKLAVAFGVLATPPGTILRVASNLRVCVDCHNFLKLFSGVYNR 555

Query: 684 EIIARDRNRFHHFKDGNCSCNDYW 707
           +++ RD NRFHHF+ G CSC+DYW
Sbjct: 556 DVVLRDHNRFHHFRGGRCSCSDYW 579



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/384 (29%), Positives = 189/384 (49%), Gaps = 6/384 (1%)

Query: 48  QVHSQIIKTGL-HNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           Q+H+ II+T L      +L  L  I    P  D SY+   F  +  P    +N +IR  S
Sbjct: 21  QIHAHIIRTTLIQYPTVSLQFLSRIALSGPLQDASYSQRFFGQLSHPLVSHYNTMIRACS 80

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
           +S SP   +  Y  M   G   +  +  F +KSC +   +  G Q+H ++ K G + D  
Sbjct: 81  MSDSPQKGLLLYRDMRRRGIAADPLSSSFAVKSCIRFLYLPGGVQVHCNIFKDGHQWDTL 140

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           + T+++++Y+       A  VF++   RD V++  +I+         DA  LFD M    
Sbjct: 141 LLTAVMDLYSLCQRGGDACKVFDEMPHRDTVAWNVMISCCIRNNRTRDALSLFDVMQGSS 200

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
               P++ T + +L ACAH+ +LE G  +   I   G    L++ N+LI MYS+CG L K
Sbjct: 201 YKCEPDDVTCLLLLQACAHLNALEFGERIHGYIMERGYRDALNLCNSLISMYSRCGCLDK 260

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A ++F+ +  ++V+SW+ MI G       +EA+  F +ML+  + P+D TF  VL AC+Y
Sbjct: 261 AYEVFKGMGNKNVVSWSAMISGLAMNGYGREAIEAFEEMLRIGVLPDDQTFTGVLSACSY 320

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WN 405
            G +D G      + +      NV  +  ++D+  + G +  A Q+   M  K  ++ W 
Sbjct: 321 SGMVDEGMSFFHRMSREFGVTPNVHHYGCMVDLLGRAGLLDKAYQLIMSMVVKPDSTMWR 380

Query: 406 AMISGLAMHGKADKALSLFSRMIG 429
            ++    +HG     ++L  R+IG
Sbjct: 381 TLLGACRIHGH----VTLGERVIG 400


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/660 (37%), Positives = 376/660 (56%), Gaps = 46/660 (6%)

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKS 139
           + +A+  FE + E + V WN +I   S S     A+   V M   G   ++ T+   L +
Sbjct: 210 IDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTA 269

Query: 140 CAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSY 199
           CA++ ++  GKQ+HA V++   + DP+V ++LI +YA+ G  + A+ VFN    R++VS+
Sbjct: 270 CARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSW 329

Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
           T LI G         + +LF++M  R E    ++  + T++S C +   L LG  + SL 
Sbjct: 330 TVLIGGSLQYECFSKSVELFNQM--RAELMAIDQFALATLISGCFNRMDLCLGRQLHSLC 387

Query: 260 EGHGLGSNLHVTNALIDMYSKCGDL-------------------------------VKAR 288
              G    + V+N+LI +Y+KCGDL                               +KAR
Sbjct: 388 LKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAR 447

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVLPACAYL 347
           + F+ +  R+ I+WN M+G Y      ++ L ++  ML Q ++ P+ VT++++   CA +
Sbjct: 448 EFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADI 507

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
           GA  LG  I  +  K    L NVS+  + I MY+KCG I  A+++FD +  K + SWNAM
Sbjct: 508 GANKLGDQIIGHTVKAGLIL-NVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAM 566

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           I+G + HG   +A   F  M+ +G +PD I++V VLS C+H+GL+  G+ YF+ M + + 
Sbjct: 567 ITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHG 626

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
           ISP L+H+ CMVDLLGRAG   EA+ L+  M MKP A +W +LL AC++HG  EL E  A
Sbjct: 627 ISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAA 686

Query: 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF 587
           KH+ EL+  + G+Y+LL+ +Y+ AG+ DD A +R  + DKG+KK PG S +EV + VH F
Sbjct: 687 KHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVF 746

Query: 588 LVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAY 647
              D  HPQ   I   +DE+   +   G+V   S             +  HHSEKLA+A+
Sbjct: 747 KADDVSHPQVIAIRNKMDELMEKIAHLGYVRTES-----------PRSEIHHSEKLAVAF 795

Query: 648 GLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           G++S      I I+KNLR+CG+CH+  KLIS + +RE + RD  RFHHFK G+CSC DYW
Sbjct: 796 GIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 855



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 198/414 (47%), Gaps = 41/414 (9%)

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD- 195
           L+SC    A++  + +H  ++ +GL S  F+  +L++ Y   G L  AR +  ++ +++ 
Sbjct: 27  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLL-RADIKEP 85

Query: 196 -AVSYTALITGYASRGYLDDARQLFDEMPIRE----ENFVPNESTVVTVLSACAHMGSLE 250
             +++  ++ GYA +G L DA +LFD MP R+       + + S       +C  +G  E
Sbjct: 86  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCRE 145

Query: 251 LGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK-------------- 296
           L   +  L        +  V  AL+DM+ +CG +  A  LF  IE+              
Sbjct: 146 LAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYA 205

Query: 297 -----------------RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS 339
                            RDV+SWN+MI   + +   +EAL L  +M +  +  +  T+ S
Sbjct: 206 KLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTS 265

Query: 340 VLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK 399
            L ACA L +L  GK +HA + ++  +++   + ++LI++YAKCG+ K A++VF+ +  +
Sbjct: 266 SLTACARLFSLGWGKQLHAKVIRSLPQIDPY-VASALIELYAKCGSFKEAKRVFNSLQDR 324

Query: 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF 459
              SW  +I G   +    K++ LF++M  E +  D      ++S C +   L +GRQ  
Sbjct: 325 NSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLH 384

Query: 460 NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
           +  ++    +  +     ++ L  + G    AE +  +M  + D   WTS++ A
Sbjct: 385 SLCLKSGH-NRAIVVSNSLISLYAKCGDLQNAEFVFSSMSER-DIVSWTSMITA 436



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 125/549 (22%), Positives = 232/549 (42%), Gaps = 74/549 (13%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYAL-LVFETIREPNQVIWNNIIRGH 105
           + +H +++  GL +  F  + L+   A    G LS A  L+   I+EPN +  N ++ G+
Sbjct: 40  RALHGRLVTVGLASAVFLQNTLLH--AYLSCGALSDARRLLRADIKEPNVITHNIMMNGY 97

Query: 106 SLSSSPVVAIKFYVRM------ILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKL 159
           +   S   A + + RM        +  + +T        SC  +       Q+     K 
Sbjct: 98  AKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCRELAPQLLGLFWKF 157

Query: 160 GLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLF 219
               DP V T+L++M+ + G ++ A  +F++          +++ GYA    +D A + F
Sbjct: 158 DFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYF 217

Query: 220 DEMPIRE-----------------------------ENFVPNESTVVTVLSACAHMGSLE 250
           ++M  R+                             +    + +T  + L+ACA + SL 
Sbjct: 218 EDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLG 277

Query: 251 LGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYT 310
            G  + + +       + +V +ALI++Y+KCG   +A+ +F S++ R+ +SW V+IGG  
Sbjct: 278 WGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSL 337

Query: 311 HTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN-HQK--- 366
               + +++ LF QM    +  +     +++  C     L LG+ +H+   K+ H +   
Sbjct: 338 QYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIV 397

Query: 367 --------------LNNVSL------------WTSLIDMYAKCGNIKAAEQVFDGMGYKT 400
                         L N               WTS+I  Y++ GNI  A + FDGM  + 
Sbjct: 398 VSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRN 457

Query: 401 LASWNAMISGLAMHGKADKALSLFSRMIGE-GLQPDDITFVGVLSACNHAGLLDIGRQYF 459
             +WNAM+     HG  +  L ++S M+ +  + PD +T+V +   C   G   +G Q  
Sbjct: 458 AITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQII 517

Query: 460 NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
              ++   I   +      + +  + G   EA+ L   +  K D   W +++     HG 
Sbjct: 518 GHTVKAGLI-LNVSVANAAITMYSKCGRISEAQKLFDLLNGK-DVVSWNAMITGYSQHG- 574

Query: 520 LELGESVAK 528
             +G+  AK
Sbjct: 575 --MGKQAAK 581



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 145/302 (48%), Gaps = 41/302 (13%)

Query: 30  NQPSLA-LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALL 85
           +Q +LA L+S C N  ++   +Q+HS  +K+G HN    +S  + I   +  GDL  A  
Sbjct: 360 DQFALATLISGCFNRMDLCLGRQLHSLCLKSG-HNRAIVVSNSL-ISLYAKCGDLQNAEF 417

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRM----------ILSGFV-------- 127
           VF ++ E + V W ++I  +S   + + A +F+  M          +L  ++        
Sbjct: 418 VFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDG 477

Query: 128 --------------PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLIN 173
                         P+  T+  + + CA I A   G QI  H +K GL  +  V  + I 
Sbjct: 478 LKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAIT 537

Query: 174 MYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
           MY++ G +  A+ +F+  + +D VS+ A+ITGY+  G    A + FD+M  +     P+ 
Sbjct: 538 MYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAK--PDY 595

Query: 234 STVVTVLSACAHMGSLELGN-WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFE 292
            + V VLS C+H G ++ G  +   +   HG+   L   + ++D+  + G L +A+DL +
Sbjct: 596 ISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLID 655

Query: 293 SI 294
            +
Sbjct: 656 KM 657



 Score = 42.4 bits (98), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 69/187 (36%), Gaps = 45/187 (24%)

Query: 71  ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNT 130
           I   S  G +S A  +F+ +   + V WN +I G+S       A K +  M+  G  P+ 
Sbjct: 536 ITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDY 595

Query: 131 YTFPFILKSCAKISAISEGK-----QIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR 185
            ++  +L  C+    + EGK         H +  GLE                       
Sbjct: 596 ISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLE----------------------- 632

Query: 186 LVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH 245
                        ++ ++      G+L +A+ L D+MP++     P       +LSAC  
Sbjct: 633 ------------HFSCMVDLLGRAGHLTEAKDLIDKMPMK-----PTAEVWGALLSACKI 675

Query: 246 MGSLELG 252
            G+ EL 
Sbjct: 676 HGNDELA 682


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/660 (37%), Positives = 376/660 (56%), Gaps = 46/660 (6%)

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKS 139
           + +A+  FE + E + V WN +I   S S     A+   V M   G   ++ T+   L +
Sbjct: 220 IDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTA 279

Query: 140 CAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSY 199
           CA++ ++  GKQ+HA V++   + DP+V ++LI +YA+ G  + A+ VFN    R++VS+
Sbjct: 280 CARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSW 339

Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
           T LI G         + +LF++M  R E    ++  + T++S C +   L LG  + SL 
Sbjct: 340 TVLIGGSLQYECFSKSVELFNQM--RAELMAIDQFALATLISGCFNRMDLCLGRQLHSLC 397

Query: 260 EGHGLGSNLHVTNALIDMYSKCGDL-------------------------------VKAR 288
              G    + V+N+LI +Y+KCGDL                               +KAR
Sbjct: 398 LKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAR 457

Query: 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVLPACAYL 347
           + F+ +  R+ I+WN M+G Y      ++ L ++  ML Q ++ P+ VT++++   CA +
Sbjct: 458 EFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADI 517

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
           GA  LG  I  +  K    L NVS+  + I MY+KCG I  A+++FD +  K + SWNAM
Sbjct: 518 GANKLGDQIIGHTVKAGLIL-NVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAM 576

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           I+G + HG   +A   F  M+ +G +PD I++V VLS C+H+GL+  G+ YF+ M + + 
Sbjct: 577 ITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHG 636

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
           ISP L+H+ CMVDLLGRAG   EA+ L+  M MKP A +W +LL AC++HG  EL E  A
Sbjct: 637 ISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAA 696

Query: 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF 587
           KH+ EL+  + G+Y+LL+ +Y+ AG+ DD A +R  + DKG+KK PG S +EV + VH F
Sbjct: 697 KHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVF 756

Query: 588 LVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAY 647
              D  HPQ   I   +DE+   +   G+V   S             +  HHSEKLA+A+
Sbjct: 757 KADDVSHPQVIAIRNKMDELMEKIAHLGYVRTESPR-----------SEIHHSEKLAVAF 805

Query: 648 GLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           G++S      I I+KNLR+CG+CH+  KLIS + +RE + RD  RFHHFK G+CSC DYW
Sbjct: 806 GIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 114/440 (25%), Positives = 203/440 (46%), Gaps = 67/440 (15%)

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD- 195
           L+SC    A++  + +H  ++ +GL S  F+  +L++ Y   G L  AR +  ++ +++ 
Sbjct: 11  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLL-RADIKEP 69

Query: 196 -AVSYTALITGYASRGYLDDARQLFDEMPIRE---------------------ENFV--- 230
             +++  ++ GYA +G L DA +LFD MP R+                     E FV   
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 231 ------PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
                 PN  T   V+ +C  +G  EL   +  L        +  V  AL+DM+ +CG +
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYV 189

Query: 285 VKARDLFESIEK-------------------------------RDVISWNVMIGGYTHTS 313
             A  LF  IE+                               RDV+SWN+MI   + + 
Sbjct: 190 DFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSG 249

Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
             +EAL L  +M +  +  +  T+ S L ACA L +L  GK +HA + ++  +++   + 
Sbjct: 250 RVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPY-VA 308

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
           ++LI++YAKCG+ K A++VF+ +  +   SW  +I G   +    K++ LF++M  E + 
Sbjct: 309 SALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMA 368

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
            D      ++S C +   L +GRQ  +  ++    +  +     ++ L  + G    AE 
Sbjct: 369 IDQFALATLISGCFNRMDLCLGRQLHSLCLKSGH-NRAIVVSNSLISLYAKCGDLQNAEF 427

Query: 494 LLKTMEMKPDAAIWTSLLGA 513
           +  +M  + D   WTS++ A
Sbjct: 428 VFSSMSER-DIVSWTSMITA 446



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/512 (23%), Positives = 223/512 (43%), Gaps = 66/512 (12%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG-FVPNTYTFPFI 136
           G LS A  +F+ +   +   WN ++ G+  +   +  ++ +V M  SG  +PN +TF  +
Sbjct: 85  GSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCV 144

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           +KSC  +       Q+     K     DP V T+L++M+ + G ++ A  +F++      
Sbjct: 145 MKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTI 204

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIRE-----------------------------E 227
               +++ GYA    +D A + F++M  R+                             +
Sbjct: 205 FCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRK 264

Query: 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA 287
               + +T  + L+ACA + SL  G  + + +       + +V +ALI++Y+KCG   +A
Sbjct: 265 GVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEA 324

Query: 288 RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347
           + +F S++ R+ +SW V+IGG      + +++ LF QM    +  +     +++  C   
Sbjct: 325 KRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNR 384

Query: 348 GALDLGKWIHAYIDKN-HQK-----------------LNNVSL------------WTSLI 377
             L LG+ +H+   K+ H +                 L N               WTS+I
Sbjct: 385 MDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMI 444

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE-GLQPDD 436
             Y++ GNI  A + FDGM  +   +WNAM+     HG  +  L ++S M+ +  + PD 
Sbjct: 445 TAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDW 504

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
           +T+V +   C   G   +G Q     ++   I   +      + +  + G   EA+ L  
Sbjct: 505 VTYVTLFRGCADIGANKLGDQIIGHTVKAGLI-LNVSVANAAITMYSKCGRISEAQKLFD 563

Query: 497 TMEMKPDAAIWTSLLGACRVHGRLELGESVAK 528
            +  K D   W +++     HG   +G+  AK
Sbjct: 564 LLNGK-DVVSWNAMITGYSQHG---MGKQAAK 591



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 141/300 (47%), Gaps = 37/300 (12%)

Query: 30  NQPSLA-LLSKCTNMQNI---KQVHSQIIKTG--------------------LHNTQFAL 65
           +Q +LA L+S C N  ++   +Q+HS  +K+G                    L N +F  
Sbjct: 370 DQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVF 429

Query: 66  SKLIE---------ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIK 116
           S + E         I A S  G++  A   F+ +   N + WN ++  +    +    +K
Sbjct: 430 SSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLK 489

Query: 117 FYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMY 175
            Y  M+    V P+  T+  + + CA I A   G QI  H +K GL  +  V  + I MY
Sbjct: 490 MYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMY 549

Query: 176 AQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNEST 235
           ++ G +  A+ +F+  + +D VS+ A+ITGY+  G    A + FD+M  +     P+  +
Sbjct: 550 SKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAK--PDYIS 607

Query: 236 VVTVLSACAHMGSLELGN-WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294
            V VLS C+H G ++ G  +   +   HG+   L   + ++D+  + G L +A+DL + +
Sbjct: 608 YVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKM 667



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 69/187 (36%), Gaps = 45/187 (24%)

Query: 71  ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNT 130
           I   S  G +S A  +F+ +   + V WN +I G+S       A K +  M+  G  P+ 
Sbjct: 546 ITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDY 605

Query: 131 YTFPFILKSCAKISAISEGK-----QIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR 185
            ++  +L  C+    + EGK         H +  GLE                       
Sbjct: 606 ISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLE----------------------- 642

Query: 186 LVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH 245
                        ++ ++      G+L +A+ L D+MP++     P       +LSAC  
Sbjct: 643 ------------HFSCMVDLLGRAGHLTEAKDLIDKMPMK-----PTAEVWGALLSACKI 685

Query: 246 MGSLELG 252
            G+ EL 
Sbjct: 686 HGNDELA 692


>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
          Length = 1866

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 261/685 (38%), Positives = 400/685 (58%), Gaps = 11/685 (1%)

Query: 6   SSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNM-QNIKQVHSQIIKTGLHNTQFA 64
           S L L P+ L F  S       L    SL  L  C+   ++  Q+HSQ+I T L +  F 
Sbjct: 6   SKLPLHPN-LSFFKSHYHQTPFLHPLTSLNSLLNCSRTSKHATQIHSQLITTALLSLPFL 64

Query: 65  LSKLIEICAVSPFGDLSYALLVFETIRE--PNQVIWNNIIRGHSLSSSPVVAIKFYVRMI 122
            + L+ + A    G +   LL+F +  +   N V W ++I   +    P  A+ F+  M 
Sbjct: 65  FNNLLNLYAKC--GSVDQTLLLFSSAPDDSKNVVSWTSLITQLTRFKRPFKALTFFNHMR 122

Query: 123 LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELE 182
            SG  PN YTF  +L +C   +A   G+Q+H+ V K G  ++ FV ++L++MYA+  ++ 
Sbjct: 123 RSGVYPNHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDML 182

Query: 183 SARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVP-NESTVVTVLS 241
            A  VF +  +R+ VS+  +I G+      D A   F  + +  EN    +E +  +V S
Sbjct: 183 MAEKVFEEMPVRNLVSWNTMIVGFLQNKLYDQAIFFFKTLLL--ENLTALDEVSFSSVFS 240

Query: 242 ACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVIS 301
           ACA+ G+LE G  V  +    G+ + +++ N+L DMY KCG       LF +   RDV++
Sbjct: 241 ACANAGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVT 300

Query: 302 WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361
           WN+MI  Y +  +Y++A   F  M +    P++ ++ SVL +CA L AL  G  IH  I 
Sbjct: 301 WNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQII 360

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421
           ++   + N+ + +SLI MYAKCG++  A Q+F+    + +  W A+I+    HG A+  +
Sbjct: 361 RS-GFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGHANWVV 419

Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481
            LF +M+ EG++PD ITFV VLSAC+H G ++ G  YFN+MI+ + I P  +HY C+VDL
Sbjct: 420 ELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVDL 479

Query: 482 LGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541
           L RAG  D A+  ++ M +KPDA++W +LL ACR H  L +G+ VA  L +LEP+NPG Y
Sbjct: 480 LSRAGELDRAKRFIELMPIKPDASVWGALLSACRNHSNLIMGKEVALKLFDLEPDNPGNY 539

Query: 542 VLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIY 601
           VLL N+    G  ++   +R ++   G++K PGCS I++ +  + F V DK H ++K IY
Sbjct: 540 VLLCNILTRNGMLNEADEVRRKMESIGVRKEPGCSWIDIKNSTYVFTVHDKSHEKTKEIY 599

Query: 602 EMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIV 661
           EML+++  L++K G+V +T E   +  EE+KE +L +HSEK+A+A+GL+S   G  IRI 
Sbjct: 600 EMLEKLKELVKKKGYVAET-EFAINTAEEYKEQSLWYHSEKIALAFGLLSLPAGAPIRIK 658

Query: 662 KNLRVCGNCHSATKLISKIFNREII 686
           KNLR CG+CH+  K  S+IF REII
Sbjct: 659 KNLRTCGDCHTVMKFASEIFAREII 683


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 255/654 (38%), Positives = 351/654 (53%), Gaps = 76/654 (11%)

Query: 126 FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR 185
           F P+ +  P   KSC  +      + +HA     GL  DPFV +SL++ Y + G   +AR
Sbjct: 16  FPPDPHLLPTAFKSCPTLPL---ARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNAR 72

Query: 186 LVFN--KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR---EENFV---------- 230
            +F+      R  V ++AL+  +A+RG  + A +L +EM      E N +          
Sbjct: 73  ALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLN 132

Query: 231 ----------------------PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
                                 P+ + V   LSA   +G + +G  +       G  ++ 
Sbjct: 133 RSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADA 192

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF------ 322
            V  ALIDMY KCG   +   +F+     DV S N +I G +  +   EAL LF      
Sbjct: 193 CVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDR 252

Query: 323 -----------------------------RQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
                                        R+M     EPN VT   VLPA A + AL  G
Sbjct: 253 GVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHG 312

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAM 413
           +  H +  +    L++V + ++L+DMYAKCG +K A  +FD M  + + SWNAMI G AM
Sbjct: 313 RSAHCFALRK-GFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAM 371

Query: 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQ 473
           +G+A  A+ +F  M+    +PD +TF  +L+AC  AGL + GR YF  M  +Y +SP+++
Sbjct: 372 YGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRME 431

Query: 474 HYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL 533
           HY CMV LLGRAG  DEA  L+  M  +PDA IW SLLG+CRVHG ++L E  A+ L  L
Sbjct: 432 HYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHL 491

Query: 534 EPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKV 593
           EPEN G YVLLSN+YA    WD V  +R  + D G+KK  GCS IE+ + VH  L GD  
Sbjct: 492 EPENAGNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIEIKNKVHMLLAGDDS 551

Query: 594 HPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTK 653
           HP    I E +++++  + K GFVP T  VL+D++E+ K+  L+ HSEKLA+A GLIST 
Sbjct: 552 HPMMTAIIEKINQLNIQMRKLGFVPSTDFVLHDVEEQEKDDILAVHSEKLAVALGLISTS 611

Query: 654 PGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           PGTT+R++KNLR+CG+CH A K IS    REI  RD NRFHHF  G CSC D+W
Sbjct: 612 PGTTLRVIKNLRICGDCHEAMKFISSFEGREISVRDTNRFHHFSGGKCSCGDFW 665



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 176/390 (45%), Gaps = 40/390 (10%)

Query: 71  ICAVSPFGDLSYALLVFETIR-----EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG 125
           + A +  GD   A  + E +R     EPN + WN ++ G + S     A+     M   G
Sbjct: 92  VAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEG 151

Query: 126 FV-PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
            + P+       L +   +  +S G+Q+H + +K G  +D  V T+LI+MY + G+    
Sbjct: 152 LLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEV 211

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR--EENFV------------ 230
             VF++SS  D  S  ALI G +    + +A +LF E   R  E N V            
Sbjct: 212 VRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQN 271

Query: 231 -------------------PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
                              PN  T+  VL A A++ +L  G          G   +++V+
Sbjct: 272 GKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVS 331

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           +AL+DMY+KCG +  AR +F+++  R+V+SWN MIGGY    +   A+ +F  ML+   +
Sbjct: 332 SALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQK 391

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+ VTF  +L AC   G  + G+     +   +     +  +  ++ +  + G +  A  
Sbjct: 392 PDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYD 451

Query: 392 VFDGMGYKTLAS-WNAMISGLAMHGKADKA 420
           +   M ++  A  W +++    +HG  D A
Sbjct: 452 LISDMPFEPDAYIWGSLLGSCRVHGNVDLA 481


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 255/673 (37%), Positives = 381/673 (56%), Gaps = 13/673 (1%)

Query: 34   LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
            + +L  C   + I   K VH   +K  L       + L+++   S  G ++ A ++F+  
Sbjct: 651  VTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDM--YSKCGCITNAQMIFKMN 708

Query: 91   REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG--FVPNTYTFPFILKSCAKISAISE 148
               N V WN ++ G S             +M+  G     +  T    +  C   S +  
Sbjct: 709  NNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPS 768

Query: 149  GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
             K++H + LK     +  V  + +  YA+ G L  A+ VF+    +   S+ ALI G+A 
Sbjct: 769  LKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQ 828

Query: 209  RGYLDDARQLFD-EMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
                +D R   D  + ++    +P+  TV ++LSAC+ + SL LG  V   I  + L  +
Sbjct: 829  S---NDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERD 885

Query: 268  LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
            L V  +++ +Y  CG+L   + LF+++E + ++SWN +I GY        AL +FRQM+ 
Sbjct: 886  LFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVL 945

Query: 328  SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
              I+   ++ + V  AC+ L +L LG+  HAY  K H   ++  +  SLIDMYAK G+I 
Sbjct: 946  YGIQLCGISMMPVFGACSLLPSLRLGREAHAYALK-HLLEDDAFIACSLIDMYAKNGSIT 1004

Query: 388  AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
             + +VF+G+  K+ ASWNAMI G  +HG A +A+ LF  M   G  PDD+TF+GVL+ACN
Sbjct: 1005 QSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACN 1064

Query: 448  HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA-EALLKTMEMKPDAAI 506
            H+GL+  G +Y + M   + + P L+HY C++D+LGRAG  D+A   + + M  + D  I
Sbjct: 1065 HSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGI 1124

Query: 507  WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
            W SLL +CR+H  LE+GE VA  L ELEPE P  YVLLSN+YAG G+W+DV  +R R+N+
Sbjct: 1125 WKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNE 1184

Query: 567  KGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYD 626
              ++K  GCS IE+   V  F+VG++     + I  +   ++  + K G+ PDT  V +D
Sbjct: 1185 MSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHD 1244

Query: 627  MDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREII 686
            + EE K   L  HSEKLA+ YGLI T  GTTIR+ KNLR+C +CH+A KLISK+  REI+
Sbjct: 1245 LSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIV 1304

Query: 687  ARDRNRFHHFKDG 699
             RD  RFHHFK+G
Sbjct: 1305 VRDNKRFHHFKNG 1317



 Score =  212 bits (539), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 168/621 (27%), Positives = 292/621 (47%), Gaps = 75/621 (12%)

Query: 47   KQVHSQII-KTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
            +++H  +   T L N     +++I + A+   G    +  VF+ +R  N   WN +I  +
Sbjct: 459  RKIHQLVSGSTRLRNDDVLCTRIITMYAMC--GSPDDSRFVFDALRSKNLFQWNAVISSY 516

Query: 106  SLSSSPVVAIKFYVRMI-LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESD 164
            S +      ++ ++ MI  +  +P+ +T+P ++K+CA +S +  G  +H  V+K GL  D
Sbjct: 517  SRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVED 576

Query: 165  PFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPI 224
             FV  +L++ Y  +G +  A  +F+    R+ VS+ ++I  ++  G+ +++  L  EM  
Sbjct: 577  VFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEM-- 634

Query: 225  REEN----FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK 280
             EEN    F+P+ +T+VTVL  CA    + LG  V        L   L + NAL+DMYSK
Sbjct: 635  MEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSK 694

Query: 281  CGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ--SNIEPNDVTFL 338
            CG +  A+ +F+    ++V+SWN M+GG++   D      + RQML    +++ ++VT L
Sbjct: 695  CGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTIL 754

Query: 339  SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
            + +P C +   L   K +H Y  K     N + +  + +  YAKCG++  A++VF G+  
Sbjct: 755  NAVPVCFHESFLPSLKELHCYSLKQEFVYNEL-VANAFVASYAKCGSLSYAQRVFHGIRS 813

Query: 399  KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQY 458
            KT+ SWNA+I G A       +L    +M   GL PD  T   +LSAC+    L +G++ 
Sbjct: 814  KTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEV 873

Query: 459  FNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK----------------- 501
               +I+++ +   L  Y  ++ L    G     +AL   ME K                 
Sbjct: 874  HGFIIRNW-LERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGF 932

Query: 502  PDAAIWT-----------------SLLGACRVHGRLELGES----VAKHLLELEPENPGA 540
            PD A+                    + GAC +   L LG        KHLLE +     A
Sbjct: 933  PDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDD-----A 987

Query: 541  YVLLS--NMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSK 598
            ++  S  +MYA  G     + +   L +K              +  +  ++G  +H  +K
Sbjct: 988  FIACSLIDMYAKNGSITQSSKVFNGLKEKST------------ASWNAMIMGYGIHGLAK 1035

Query: 599  HIYEMLDEIDALLEKSGFVPD 619
               ++ +E    ++++G  PD
Sbjct: 1036 EAIKLFEE----MQRTGHNPD 1052


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 228/529 (43%), Positives = 317/529 (59%), Gaps = 52/529 (9%)

Query: 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDL 290
           P+  ++V VL ACA MG+   G  V  +    G   +L V NAL+DMY+KCG + +A  +
Sbjct: 11  PDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKV 70

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE------------------- 331
           F+ I+++DV+SWN M+ GY+    +++AL LF +M + NIE                   
Sbjct: 71  FDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLG 130

Query: 332 ---------------------------------PNDVTFLSVLPACAYLGALDLGKWIHA 358
                                            PN  T    L ACA L AL LG+ IHA
Sbjct: 131 CETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHA 190

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKAD 418
           YI +NH     + +   LIDMYAK G+I  A  VFD +  K   SW ++++G  MHG+  
Sbjct: 191 YILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGK 250

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478
           +AL +F  M   GLQPD +T + VL AC+H+G++D G ++FN+M +++ + P  +HY CM
Sbjct: 251 EALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACM 310

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
           VDLLGRAG  +EA  L++ M+M+P + +W +LL  CR+H  +ELGE  AK LLEL  EN 
Sbjct: 311 VDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSEND 370

Query: 539 GAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSK 598
           G+Y LLSN+YA A RW DVA +R+ + + G++K PGCS ++       F V DK HPQSK
Sbjct: 371 GSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKTHPQSK 430

Query: 599 HIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTI 658
            IYE+L  +   ++  G+VP+TS  L+D+D+E K   L  HSEKLA+AYG++ + PG  I
Sbjct: 431 QIYEILRSLTQRIKVLGYVPETSFALHDVDDEEKVDLLFEHSEKLALAYGILISAPGAPI 490

Query: 659 RIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           RI KNLRVCG+CH+A   IS I + EII RD +RFHHFK G+CSC+ YW
Sbjct: 491 RITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGSCSCSGYW 539



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 166/345 (48%), Gaps = 56/345 (16%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P+  +   +L +CA + A   GK +H   ++ G   D FV  +L++MYA+ G ++ A  V
Sbjct: 11  PDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKV 70

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
           F++   +D VS+ A++ GY+  G  +DA  LF++M  REEN   N  +   V++A A  G
Sbjct: 71  FDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKM--REENIELNVVSWSAVIAAFAQRG 128

Query: 248 -------------------SLELGNWV--------------------CSLIEGHGLGSNL 268
                              +LEL +W+                    C+ +    LG  +
Sbjct: 129 LGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQI 188

Query: 269 H--------------VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           H              V N LIDMY+K GD+  AR +F+++++++ +SW  ++ GY     
Sbjct: 189 HAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGR 248

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
            KEAL +F +M +  ++P+ VT L VL AC++ G +D G      + K    +     + 
Sbjct: 249 GKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYA 308

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKAD 418
            ++D+  + G +  A ++ +GM  + +   W A++SG  +H   +
Sbjct: 309 CMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVE 353



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 147/287 (51%), Gaps = 27/287 (9%)

Query: 75  SPFGDLSYALLVFETIREPN----QVIWNNII-----RGHSLSSSPVV----------AI 115
           S  G    AL +FE +RE N     V W+ +I     RG    +  V           A+
Sbjct: 90  SQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGCETLDVFREMQHGEANDAL 149

Query: 116 KFYVRMI-LSGFV-PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESD-PFVHTSLI 172
           + +  M    G V PN +T    L +CA+++A+  G+QIHA++L+   +S   +V   LI
Sbjct: 150 ELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLI 209

Query: 173 NMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPN 232
           +MYA++G+++ AR VF+    ++ VS+T+L+TGY   G   +A ++FDEM  R     P+
Sbjct: 210 DMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEM--RRVGLQPD 267

Query: 233 ESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLF 291
             T++ VL AC+H G ++ G  +  S+ +  G+         ++D+  + G L +A +L 
Sbjct: 268 GVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELI 327

Query: 292 ESIEKR-DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTF 337
           E ++     I W  ++ G    ++ +      +Q+L+ N E ND ++
Sbjct: 328 EGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSE-NDGSY 373



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 143/302 (47%), Gaps = 43/302 (14%)

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
           ++ P+ V+ ++VLPACA +GA   GK +H  I        ++ +  +L+DMYAKCG +  
Sbjct: 8   DMRPDVVSLVNVLPACASMGAWLHGKAVHG-IAVRSGSFEDLFVGNALVDMYAKCGMVDE 66

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A +VFD +  K + SWNAM++G +  G+ + AL LF +M  E ++ + +++  V++A   
Sbjct: 67  ASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQ 126

Query: 449 AGL----LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504
            GL    LD+ R+     +Q  + +  L+ +  M     + GL            +KP+ 
Sbjct: 127 RGLGCETLDVFRE-----MQHGEANDALELFSWM---FKQDGL------------VKPNC 166

Query: 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV--LLSNMYAGAGRWDDVATIRT 562
              +  L AC     L LG  +  ++L    ++   YV   L +MYA +G   D+   R 
Sbjct: 167 FTISCALIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSG---DIDVARF 223

Query: 563 RLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSE 622
             ++   K     +S+         + G  +H + K   E+ DE    + + G  PD   
Sbjct: 224 VFDNLKQKNFVSWTSL---------MTGYGMHGRGKEALEVFDE----MRRVGLQPDGVT 270

Query: 623 VL 624
           +L
Sbjct: 271 LL 272


>gi|326522845|dbj|BAJ88468.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 776

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 252/711 (35%), Positives = 401/711 (56%), Gaps = 41/711 (5%)

Query: 26  KLLQNQPSLALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEI---CAVSPFGD 79
           + +Q+   + LL +C     +   + +H  ++KTG     F  + L+ +   CA S    
Sbjct: 72  QTVQSAMYVPLLHRCVEAGGLGAARALHGHMVKTGTAADMFVATSLVNVYMRCASS---- 127

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKS 139
              A  +F+ + + N V W  +I GH+L+S P +A++ +V M+  G  P+ YT   +L +
Sbjct: 128 -RDARRLFDGMPDKNVVTWTALITGHTLNSEPALALEVFVEMLELGRYPSHYTLGGMLSA 186

Query: 140 CAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSY 199
           C+    I  G+Q+H + +K G ++   +  SL  +Y ++G+LES    F  +  ++ +++
Sbjct: 187 CSAARRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNVITW 246

Query: 200 TALITGYAS-RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSL 258
           T +I+  A    YLD    LF +M   E   +PNE T+ +V+S C     + LG  V + 
Sbjct: 247 TTMISSCAEDENYLDLGLSLFLDM--LEGGVMPNEFTLTSVMSLCGARLDMSLGKQVQAF 304

Query: 259 IEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK-- 316
               G  +NL V N+ + +Y + G+  +A  LFE ++   +I+WN MI GY    D    
Sbjct: 305 CYKVGCEANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYAQIMDSAKD 364

Query: 317 ---------EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
                    +AL LFR +++S ++P+  TF S+L  C+ + AL+ G+ IHA   K    L
Sbjct: 365 DLHARSRGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANTIKTGC-L 423

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
           ++V + ++L++MY KCG+I+ A + F  M  +T  +W +MISG + HG++  A+ LF  M
Sbjct: 424 SDVVVNSALVNMYNKCGSIECATKAFVEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDM 483

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
           +  G +P++ITFV +LSAC++AGL++   +YF+ M  +Y I P + HYGCMVD+  R G 
Sbjct: 484 VLSGARPNEITFVSLLSACSYAGLVEEAERYFDMMRNEYHIEPLVDHYGCMVDMFVRLGR 543

Query: 488 FDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547
            D+A + +K    +P+ AIW+SL+  CR HG +EL    A  LLEL+P+    YVLL NM
Sbjct: 544 LDDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLELKPKVIETYVLLLNM 603

Query: 548 YAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEI 607
           Y   GRW DVA +R     + +  +   S I +   V+ F   D  HPQ+  +Y++L+  
Sbjct: 604 YISTGRWRDVARVRKLAKHEDVGVLRDRSWIAIRDKVYFFRADDMTHPQATELYQLLEN- 662

Query: 608 DALLEKS---GFVP--DTSEVLYDMDE--EWKEGA-----LSHHSEKLAIAYGLISTKPG 655
             LLEK+   G+ P  +  E+L+D  E  + K  A     + HHSE+LA+A GL+ T PG
Sbjct: 663 --LLEKAKAVGYEPYQNAPELLFDSKEGDDDKPAAAAGSLIKHHSERLAVALGLLETPPG 720

Query: 656 TTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDY 706
            T+R+ KN+ +C +CHS+ K  S + NREI+ RD  R H FKDG CSC D+
Sbjct: 721 ATVRVTKNITMCRDCHSSIKYFSLLANREIVVRDSKRLHKFKDGRCSCGDF 771



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 195/411 (47%), Gaps = 17/411 (4%)

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           M+  G    +  +  +L  C +   +   + +H H++K G  +D FV TSL+N+Y +   
Sbjct: 67  MLRDGQTVQSAMYVPLLHRCVEAGGLGAARALHGHMVKTGTAADMFVATSLVNVYMRCAS 126

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
              AR +F+    ++ V++TALITG+        A ++F EM   E    P+  T+  +L
Sbjct: 127 SRDARRLFDGMPDKNVVTWTALITGHTLNSEPALALEVFVEM--LELGRYPSHYTLGGML 184

Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVI 300
           SAC+    ++LG  V      +G  +   + N+L  +Y K GDL      F+    ++VI
Sbjct: 185 SACSAARRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNVI 244

Query: 301 SWNVMIGGYTHTSDYKE-ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
           +W  MI       +Y +  L LF  ML+  + PN+ T  SV+  C     + LGK + A+
Sbjct: 245 TWTTMISSCAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMSLCGARLDMSLGKQVQAF 304

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLA------- 412
             K   +  N+ +  S + +Y + G    A ++F+ M   ++ +WNAMISG A       
Sbjct: 305 CYKVGCE-ANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYAQIMDSAK 363

Query: 413 --MHGKAD--KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
             +H ++   +AL LF  ++   L+PD  TF  +LS C+    L+ G Q     I+   +
Sbjct: 364 DDLHARSRGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANTIKTGCL 423

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
           S  + +   +V++  + G  + A      M  +     WTS++     HGR
Sbjct: 424 SDVVVN-SALVNMYNKCGSIECATKAFVEMPTRT-PVTWTSMISGYSQHGR 472


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 246/616 (39%), Positives = 365/616 (59%), Gaps = 20/616 (3%)

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
           P+ V + +++RG+        AI+ + +M       N  T+  +L        ++E +++
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFHQMPER----NHVTYTVLLGGFLDAGRVNEARKL 165

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
              +     + D    T++++ Y Q G +  AR +F++   R+ VS+TA+I+GYA  G +
Sbjct: 166 FDEMP----DKDVVARTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKV 221

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
             AR+LF+ MP R      NE +   +L      G +E    + + +  H + +     N
Sbjct: 222 ILARKLFEVMPDR------NEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAA----CN 271

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           A++  + + G +  A+ +FE +  RD  +W+ MI  Y       EAL  FR+ML   I P
Sbjct: 272 AMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRP 331

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N  +F+S+L  CA L   D G+ +HA + +      +V   ++LI MY KCGN+  A++V
Sbjct: 332 NYTSFISILTVCAALATADYGRELHAAMLRCSFD-TDVFAVSALITMYIKCGNLDKAKRV 390

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F+    K +  WN+MI+G A HG  ++AL +F  +    + PD IT++GVL+AC++ G +
Sbjct: 391 FNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKV 450

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
             GR+ FN+M  +  I     HY CMVDLLGRAGL DEA  L+  M ++PDA IW +L+G
Sbjct: 451 KEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMG 510

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           ACR+H   E+ E  AK LLELEP + G YVLLS++Y   GRW+D + +R  ++ + + K 
Sbjct: 511 ACRMHKNAEIAEVAAKKLLELEPGSAGPYVLLSHIYTSTGRWEDASDMRKFISSRNLNKS 570

Query: 573 PGCSSIEVGSVVHEFLVGDKV-HPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
           PGCS IE   +VH F  GD + HP+   I  ML+E+D LL +SG+  D S VL+D+DEE 
Sbjct: 571 PGCSWIEYNKMVHLFTSGDVLSHPEHAIILNMLEELDGLLMESGYSADGSFVLHDVDEEQ 630

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
           K  +L +HSE+ A+AYGL+    G  IR++KNLRVCG+CHSA KLI+KI +REII RD N
Sbjct: 631 KAQSLRYHSERQAVAYGLLKVPAGMPIRVMKNLRVCGDCHSAIKLITKITSREIILRDAN 690

Query: 692 RFHHFKDGNCSCNDYW 707
           RFHHFKDG CSC DYW
Sbjct: 691 RFHHFKDGLCSCRDYW 706



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 176/405 (43%), Gaps = 74/405 (18%)

Query: 177 QNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTV 236
           + G +E AR  F+   LR   SY ALI GY      D A  LF  MP R+   + + + +
Sbjct: 29  RAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPSRD---LGSYNAL 85

Query: 237 VTVLS--------ACAHMGSLELGNWVC---SLIEG---HGLGSNL-----------HVT 271
           +  LS        A A + S+ L   V    SL+ G   HGL ++            HVT
Sbjct: 86  IAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMPERNHVT 145

Query: 272 -NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
              L+  +   G + +AR LF+ +  +DV++   M+ GY       EA  LF +M + N+
Sbjct: 146 YTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEMPKRNV 205

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
               V++ +++   A  G + L + +   +       N VS WT+++  Y + G+++ AE
Sbjct: 206 ----VSWTAMISGYAQNGKVILARKLFEVMPDR----NEVS-WTAMLVGYIQAGHVEDAE 256

Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKAD-------------------------------K 419
            +F+ M    +A+ NAM+ G   HG  D                               +
Sbjct: 257 DLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLME 316

Query: 420 ALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479
           ALS F  M+  G++P+  +F+ +L+ C      D GR+   AM++       +     ++
Sbjct: 317 ALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLR-CSFDTDVFAVSALI 375

Query: 480 DLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGE 524
            +  + G  D+A+ +    E K D  +W S++     HG   LGE
Sbjct: 376 TMYIKCGNLDKAKRVFNMFEPK-DVVMWNSMITGYAQHG---LGE 416



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 136/260 (52%), Gaps = 12/260 (4%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G +  A  +FE +   +   W+ +I+ +  +   + A+  +  M+  G  PN  +F  IL
Sbjct: 281 GMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISIL 340

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
             CA ++    G+++HA +L+   ++D F  ++LI MY + G L+ A+ VFN    +D V
Sbjct: 341 TVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVV 400

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
            + ++ITGYA  G  ++A  +FD++  R     P+  T + VL+AC++ G ++ G     
Sbjct: 401 MWNSMITGYAQHGLGEEALGIFDDL--RLARMAPDGITYIGVLTACSYTGKVKEGR---E 455

Query: 258 LIEGHGLGSNLHVTNA----LIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHT 312
           +    G+ S++ +  A    ++D+  + G + +A DL  ++  + D I W  ++G     
Sbjct: 456 IFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMH 515

Query: 313 SDYKEALMLFRQMLQSNIEP 332
            + + A +  +++L+  +EP
Sbjct: 516 KNAEIAEVAAKKLLE--LEP 533



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 121/298 (40%), Gaps = 69/298 (23%)

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN- 329
            NA I    + G++  AR  F+++  R   S+N +I GY        AL LF +M   + 
Sbjct: 20  ANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPSRDL 79

Query: 330 ----------------------------IEPNDVTFLSVLPACAYLGAL-DLGKWIHAYI 360
                                       + P+ V+F S+L      G L D  +  H   
Sbjct: 80  GSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMP 139

Query: 361 DKNH-------------------QKL------NNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
           ++NH                   +KL       +V   T+++  Y + G I  A  +FD 
Sbjct: 140 ERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDE 199

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD--DITFVGVLSACNHAGLLD 453
           M  + + SW AMISG A +GK   A  LF  M      PD  ++++  +L     AG ++
Sbjct: 200 MPKRNVVSWTAMISGYAQNGKVILARKLFEVM------PDRNEVSWTAMLVGYIQAGHVE 253

Query: 454 IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
                FNAM  D+ ++        M+   G+ G+ D A+A+ + M  + D   W++++
Sbjct: 254 DAEDLFNAM-PDHPVAA----CNAMMVGFGQHGMVDAAKAMFERMCARDDGT-WSAMI 305



 Score = 48.1 bits (113), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 92/256 (35%), Gaps = 64/256 (25%)

Query: 382 KCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM-------------- 427
           + GNI+ A   FD M  +T AS+NA+I+G   +   D AL LF RM              
Sbjct: 29  RAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPSRDLGSYNALIAG 88

Query: 428 ----------------------------------IGEGLQPDDITFVGVLSACNH----- 448
                                             +  GL  D I     +   NH     
Sbjct: 89  LSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMPERNHVTYTV 148

Query: 449 --AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
              G LD GR      + D      +     M+    +AG   EA AL   M  K +   
Sbjct: 149 LLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEMP-KRNVVS 207

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPE-NPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
           WT+++     +G++ L    A+ L E+ P+ N  ++  +   Y  AG  +D   +   + 
Sbjct: 208 WTAMISGYAQNGKVIL----ARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMP 263

Query: 566 DKGMKKVPGCSSIEVG 581
           D     V  C+++ VG
Sbjct: 264 D---HPVAACNAMMVG 276


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 255/664 (38%), Positives = 377/664 (56%), Gaps = 52/664 (7%)

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKS 139
           L  A L+F+ I  PN  ++  +I G++ +     A+K + RM     V +  ++  ++K 
Sbjct: 28  LDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMS----VRDVVSWNSMIKG 83

Query: 140 CAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSY 199
           C     +    ++   +     E +    T+++N Y + G +E A+ +F    ++D  ++
Sbjct: 84  CLDCGNLGMATRLFDEMP----EKNVISWTTMVNGYLKFGRVELAQRLFLDMHVKDVAAW 139

Query: 200 TALITGYASRGYLDDARQLFDEMPIR-------------------EENFV---------- 230
            A++ GY   G +++  +LF+EMP+R                   E  FV          
Sbjct: 140 NAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVE 199

Query: 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHG----LGSNLH--VTNALIDMYSKCGDL 284
           P  ST   VLSACA+     LG      ++ HG    LG   H  ++ +LI  Y+ C  +
Sbjct: 200 PTWSTFACVLSACANAVEFNLG------VQVHGHVVKLGCFFHEFISVSLITFYANCMKI 253

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
             A  +F     ++V+ W  ++  Y   + +++AL +F  M +    PN  TF   L AC
Sbjct: 254 EHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKAC 313

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
             L ALD GK IH    K   +  +V +  SL+ MY +CGN+ +A  VF  +  K + SW
Sbjct: 314 CGLEALDKGKEIHTMAIKLGLE-TDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSW 372

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
           N++I G A HG    AL  F++MI  G+ P++ITF G+LSAC+ +G+L  GR +F   I 
Sbjct: 373 NSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGRCFFE-YIS 431

Query: 465 DYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELG 523
            YK +  + QHY CMVD+LGR G  DEAE L++ M +K ++ IW +LL ACRVH  LE+ 
Sbjct: 432 RYKSNVLRPQHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRVHSNLEVA 491

Query: 524 ESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSV 583
           E  AKH+L+LEP    AYVLLSN+YA AGRW DV+ +R ++   G+ K PG S + +   
Sbjct: 492 ERAAKHILDLEPNCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQPGSSWVVLRGK 551

Query: 584 VHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKL 643
            HEFL  D+ HP S+ IYE LD +   L++ G+VPD    L+D+++E KE  LS HSE+L
Sbjct: 552 KHEFLSADRSHPLSERIYEKLDWLGKKLKEFGYVPDQKFALHDVEDEQKEEMLSFHSERL 611

Query: 644 AIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSC 703
           AIA+GL+ST  G+TI ++KNLRVCG+CHS  KL+SKI  R+I+ RD  RFHHFK+G CSC
Sbjct: 612 AIAFGLVSTVEGSTITVMKNLRVCGDCHSVIKLMSKIVGRKIVVRDSGRFHHFKNGICSC 671

Query: 704 NDYW 707
           +DYW
Sbjct: 672 SDYW 675



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 182/344 (52%), Gaps = 3/344 (0%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G +   + +FE +   + + W ++I G  L+     A+  + +M+ SG  P   TF  +L
Sbjct: 150 GRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVL 209

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
            +CA     + G Q+H HV+KLG     F+  SLI  YA   ++E A  +FN++  ++ V
Sbjct: 210 SACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVV 269

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
            +TAL+T Y       DA ++F +M   +   +PN+ST    L AC  + +L+ G  + +
Sbjct: 270 KWTALLTAYVWNNKHQDALRVFGDMT--KMGALPNQSTFSITLKACCGLEALDKGKEIHT 327

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
           +    GL +++ V N+L+ MY++CG++  A  +F +I ++D++SWN +I G         
Sbjct: 328 MAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLW 387

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           AL+ F QM++  ++PN++TF  +L AC+  G L  G+    YI +    +     +  ++
Sbjct: 388 ALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGRCFFEYISRYKSNVLRPQHYACMV 447

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHGKADKA 420
           D+  +CG +  AE++   M  K  +  W A++S   +H   + A
Sbjct: 448 DILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRVHSNLEVA 491



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 145/305 (47%), Gaps = 15/305 (4%)

Query: 36  LLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +LS C N        QVH  ++K G    +F    LI   A      + +A  +F     
Sbjct: 208 VLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCM--KIEHAHKIFNETLT 265

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            N V W  ++  +  ++    A++ +  M   G +PN  TF   LK+C  + A+ +GK+I
Sbjct: 266 KNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKGKEI 325

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H   +KLGLE+D FV  SL+ MY + G + SA  VF   + +D VS+ ++I G A  G+ 
Sbjct: 326 HTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFG 385

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL---H 269
             A   F++M  R  +  PNE T   +LSAC+  G L  G      I  +   SN+    
Sbjct: 386 LWALIFFNQMIRRGVD--PNEITFTGLLSACSRSGMLLKGRCFFEYISRY--KSNVLRPQ 441

Query: 270 VTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
               ++D+  +CG L +A +L   +  K + + W  ++      S+ + A    + +L  
Sbjct: 442 HYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRVHSNLEVAERAAKHIL-- 499

Query: 329 NIEPN 333
           ++EPN
Sbjct: 500 DLEPN 504



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 160/380 (42%), Gaps = 65/380 (17%)

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMP--------------IREENF-----------V 230
            +SYT  +  +     LD AR +FD++P               R +             V
Sbjct: 12  TLSYTTSLANHLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSV 71

Query: 231 PNESTVVTVLSACAHMGSLELG-------------NWVCSLIEGH----------GLGSN 267
            +  +  +++  C   G+L +              +W  +++ G+           L  +
Sbjct: 72  RDVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNVISWT-TMVNGYLKFGRVELAQRLFLD 130

Query: 268 LHVT-----NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
           +HV      NA++  Y + G + +   LFE +  RDVISW  MIGG       +EAL +F
Sbjct: 131 MHVKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVF 190

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK----NHQKLNNVSLWTSLID 378
           ++ML+S +EP   TF  VL ACA     +LG  +H ++ K     H+ ++      SLI 
Sbjct: 191 KKMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFIS-----VSLIT 245

Query: 379 MYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
            YA C  I+ A ++F+    K +  W A+++    + K   AL +F  M   G  P+  T
Sbjct: 246 FYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQST 305

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
           F   L AC     LD G++  + M     +   +     +V +    G  + A A+ + +
Sbjct: 306 FSITLKACCGLEALDKGKE-IHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNI 364

Query: 499 EMKPDAAIWTSLLGACRVHG 518
             K D   W S++     HG
Sbjct: 365 NEK-DIVSWNSIIVGSAQHG 383



 Score = 40.4 bits (93), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 10/151 (6%)

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
           +T+ +  + K   +  A  +FD +    L  +  MI+G   + +   AL LF RM     
Sbjct: 15  YTTSLANHLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVR-- 72

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
             D +++  ++  C   G L +  + F+ M +   IS     +  MV+   + G  + A+
Sbjct: 73  --DVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNVIS-----WTTMVNGYLKFGRVELAQ 125

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELG 523
            L   M +K D A W +++     +GR+E G
Sbjct: 126 RLFLDMHVK-DVAAWNAMVHGYFENGRVEEG 155


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/539 (43%), Positives = 331/539 (61%), Gaps = 12/539 (2%)

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145
           VF+ I EPN  IWN + RG+S + S    I  + +M     +PN +TFP ILKSC KI+A
Sbjct: 7   VFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVKINA 66

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
           + EG+++H  V+K G  ++PFV T+LI+MYA  G + +A  VF +   R+ +++TA+I G
Sbjct: 67  LKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAMING 126

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           Y +   L  AR+LFD  P  E + V   + +   + A   + + EL + + +        
Sbjct: 127 YITCCDLVTARRLFDLAP--ERDIVLWNTMISGYIEAKDVIRARELFDKMPN-------- 176

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
            ++   N +++ Y+  GD++    LFE + +R+V SWN +IGGYT    + E L  F++M
Sbjct: 177 KDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRM 236

Query: 326 L-QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           L    + PND T ++VL ACA LGALDLGKW+H Y + +H    NV +  +L+DMYAKCG
Sbjct: 237 LVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAE-SHGYKGNVYVRNALMDMYAKCG 295

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
            ++ A  VF  M  K L SWN +I GLA+HG    AL+LFS M   G  PD ITF+G+L 
Sbjct: 296 VVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILC 355

Query: 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504
           AC H GL++ G  YF +M  DY I P+++HYGC+VDLLGRAGL   A   ++ M ++ DA
Sbjct: 356 ACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADA 415

Query: 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564
            IW +LLGACRV+  +EL E   + L+E EP+NP  YV+LSN+Y   GRW DVA ++  +
Sbjct: 416 VIWAALLGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFGRWKDVARLKVAM 475

Query: 565 NDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEV 623
            D G KK+PGCS IEV   + EF   D+ HP+ + IY  L  +  LL  SG+VP   E+
Sbjct: 476 RDTGFKKLPGCSLIEVNDYLVEFYSLDERHPEKEQIYGTLRTLTKLLRSSGYVPGLMEL 534



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 176/359 (49%), Gaps = 15/359 (4%)

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
           +E+A  VF++    +A  + A+  GY+      D   LF +M  +  + +PN  T   +L
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQM--KGLDVMPNCFTFPVIL 58

Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVI 300
            +C  + +L+ G  V   +   G  +N  V   LIDMY+  G +  A  +F  + +R+VI
Sbjct: 59  KSCVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVI 118

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           +W  MI GY    D   A  LF      ++ P     L       Y+ A D+ +      
Sbjct: 119 AWTAMINGYITCCDLVTARRLF------DLAPERDIVLWNTMISGYIEAKDVIR-ARELF 171

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
           DK   K  +V  W ++++ YA  G++ A E++F+ M  + + SWNA+I G   +G   + 
Sbjct: 172 DKMPNK--DVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEV 229

Query: 421 LSLFSRMIGEG-LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479
           LS F RM+ +G + P+D T V VLSAC   G LD+G+ + +   + +     +     ++
Sbjct: 230 LSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGK-WVHVYAESHGYKGNVYVRNALM 288

Query: 480 DLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
           D+  + G+ + A  + K+M+ K D   W +++G   VHG      ++  H +++  ENP
Sbjct: 289 DMYAKCGVVETALDVFKSMDNK-DLISWNTIIGGLAVHGHGADALNLFSH-MKIAGENP 345



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 138/282 (48%), Gaps = 13/282 (4%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG-FVPNTYTFPFI 136
           GD+     +FE + E N   WN +I G++ +      +  + RM++ G  VPN  T   +
Sbjct: 193 GDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNV 252

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L +CA++ A+  GK +H +    G + + +V  +L++MYA+ G +E+A  VF     +D 
Sbjct: 253 LSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDL 312

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWV 255
           +S+  +I G A  G+  DA  LF  M I  EN  P+  T + +L AC HMG +E G ++ 
Sbjct: 313 ISWNTIIGGLAVHGHGADALNLFSHMKIAGEN--PDGITFIGILCACTHMGLVEDGFSYF 370

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSD 314
            S+ + + +   +     ++D+  + G L  A D    +  + D + W  ++G      +
Sbjct: 371 KSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALLGACRVYKN 430

Query: 315 YKEALMLFRQMLQSNIE-PNDVTFLSVLPACAYLGALDLGKW 355
            + A +   ++++   + P +   LS +         D G+W
Sbjct: 431 VELAELALEKLIEFEPKNPANYVMLSNIYG-------DFGRW 465



 Score = 45.8 bits (107), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 14/180 (7%)

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           ++ A +VFD +     + WNAM  G + +      + LF +M G  + P+  TF  +L +
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 446 CNHAGLLDIGRQYFNAMIQD-YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504
           C     L  G +    +I+  ++ +P +     ++D+    G    A  +   M ++ + 
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFRANPFVAT--TLIDMYASGGAIHAAYRVFGEM-IERNV 117

Query: 505 AIWTSLLGACRVHGRLELGESV-AKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563
             WT++     ++G +   + V A+ L +L PE     VL + M +G     DV  IR R
Sbjct: 118 IAWTAM-----INGYITCCDLVTARRLFDLAPERD--IVLWNTMISGYIEAKDV--IRAR 168



 Score = 39.7 bits (91), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 5/117 (4%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +LS C  +  +   K VH      G     +  + L+++ A    G +  AL VF+++  
Sbjct: 252 VLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKC--GVVETALDVFKSMDN 309

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG 149
            + + WN II G ++      A+  +  M ++G  P+  TF  IL +C  +  + +G
Sbjct: 310 KDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMGLVEDG 366


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/538 (42%), Positives = 338/538 (62%), Gaps = 13/538 (2%)

Query: 171 LINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV 230
           +++ YA+ G++  AR +F+ + +RD  ++TA+++GYA  G L++AR++FD MP  E N V
Sbjct: 105 MVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP--ERNAV 162

Query: 231 PNESTVVTVLSACAHMGSLELGNWV-CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARD 289
              + V   +       + EL N + C          N+   N ++  Y++ G L +A+ 
Sbjct: 163 SWNAMVAAYIQRRMMDEAKELFNMMPCR---------NVASWNTMLTGYAQAGMLEEAKA 213

Query: 290 LFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA 349
           +F+++ ++D +SW  M+  Y+     +E L LF +M +     N   F  VL  CA + A
Sbjct: 214 VFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAA 273

Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
           L+ G  +H  + +    +    +  +L+ MY KCGN++ A   F+ M  + + SWN MI+
Sbjct: 274 LECGMQLHGRLIRAGYGVG-CFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIA 332

Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS 469
           G A HG   +AL +F  M     +PDDIT VGVL+AC+H+GL++ G  YF +M  D+ ++
Sbjct: 333 GYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVT 392

Query: 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKH 529
            K +HY CM+DLLGRAG   EA  L+K M  +PD+ +W +LLGA R+H   ELG S A+ 
Sbjct: 393 AKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEK 452

Query: 530 LLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLV 589
           + ELEPEN G YVLLSN+YA +G+W D   +R  + ++G+KKVPG S IEV + VH F  
Sbjct: 453 IFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSA 512

Query: 590 GDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGL 649
           GD VHP+ + IY  L+++D  ++K+G+V  T  VL+D++EE KE  L +HSEKLA+AYG+
Sbjct: 513 GDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGI 572

Query: 650 ISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           ++  PG  IR++KNLRVCG+CH+A K IS I  R I+ RD NRFHHF+ G+CSC DYW
Sbjct: 573 LNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 630



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 112/431 (25%), Positives = 192/431 (44%), Gaps = 77/431 (17%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G +  A  +F +  E + + WN ++ G+        A + + RM     V    ++  ++
Sbjct: 51  GRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVV----SWNIMV 106

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
              A+   + E +++           D F  T++++ YAQNG LE AR VF+    R+AV
Sbjct: 107 SGYARRGDMVEARRL----FDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAV 162

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIR------------------EE-----NFVPNES 234
           S+ A++  Y  R  +D+A++LF+ MP R                  EE     + +P + 
Sbjct: 163 SWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKD 222

Query: 235 TV--VTVLSACAHMGSLE-----------LGNWV-----------CSLIEGHGLGSNLH- 269
            V    +L+A +  G  E            G WV           C+ I     G  LH 
Sbjct: 223 AVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHG 282

Query: 270 ------------VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
                       V NAL+ MY KCG++  AR+ FE +E+RDV+SWN MI GY      KE
Sbjct: 283 RLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKE 342

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL---WT 374
           AL +F  M  ++ +P+D+T + VL AC++ G ++ G    +Y    H      +    +T
Sbjct: 343 ALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGI---SYFYSMHHDFGVTAKPEHYT 399

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
            +ID+  + G +  A  +   M ++  ++ W A++    +H   +   S   ++    L+
Sbjct: 400 CMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIF--ELE 457

Query: 434 PDDITFVGVLS 444
           P++     +LS
Sbjct: 458 PENAGMYVLLS 468



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 140/339 (41%), Gaps = 68/339 (20%)

Query: 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
           +RD+V+Y  +I+ +A+ G +  AR  FD          P +  V                
Sbjct: 3   VRDSVTYNVMISSHANHGLVSLARHYFD--------LAPEKDAV---------------- 38

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
           +W                 N ++  Y + G + +AR LF S  + DVISWN ++ GY   
Sbjct: 39  SW-----------------NGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQW 81

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
               EA  LF +M        DV   +++ +    G    G  + A    +   + +V  
Sbjct: 82  GKMSEARELFDRM-----PGRDVVSWNIMVS----GYARRGDMVEARRLFDAAPVRDVFT 132

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
           WT+++  YA+ G ++ A +VFD M  +   SWNAM++        D+A  LF+ M    +
Sbjct: 133 WTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNV 192

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS--PKLQHY---GCMVDLL----- 482
                ++  +L+    AG+L+  +  F+ M Q   +S    L  Y   GC  + L     
Sbjct: 193 A----SWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIE 248

Query: 483 -GRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRL 520
            GR G +    A    +    D A   +L    ++HGRL
Sbjct: 249 MGRCGEWVNRSAFACVLSTCADIA---ALECGMQLHGRL 284



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 33/181 (18%)

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
           W  ++  Y + G ++ A  +F+      + SWNA++SG    GK  +A  LF RM G  +
Sbjct: 40  WNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDV 99

Query: 433 QP---------------------------DDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
                                        D  T+  V+S     G+L+  R+ F+AM + 
Sbjct: 100 VSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER 159

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
             +S     +  MV    +  + DEA+ L   M  + + A W ++L      G LE  ++
Sbjct: 160 NAVS-----WNAMVAAYIQRRMMDEAKELFNMMPCR-NVASWNTMLTGYAQAGMLEEAKA 213

Query: 526 V 526
           V
Sbjct: 214 V 214


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/666 (37%), Positives = 381/666 (57%), Gaps = 47/666 (7%)

Query: 74  VSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTF 133
           V  +G + +AL +F+++ E + V WN ++   S S     A+   V M   G   ++ T+
Sbjct: 215 VKTYG-VDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTY 273

Query: 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL 193
              L +CA++S++  GKQ+HA V++     DP+V ++L+ +YA+ G  + A+ VFN    
Sbjct: 274 TSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHD 333

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
           R+ V++T LI G+   G   ++ +LF++M  R E    ++  + T++S C     L LG 
Sbjct: 334 RNNVAWTVLIAGFLQHGCFTESVELFNQM--RAELMTLDQFALATLISGCCSRMDLCLGR 391

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKC-------------------------------G 282
            + SL    G    + V+N+LI MY+KC                               G
Sbjct: 392 QLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVG 451

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVL 341
           ++ KAR+ F+ +  ++VI+WN M+G Y      ++ L ++  ML + ++ P+ VT++++ 
Sbjct: 452 NIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLF 511

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
             CA LGA  LG  I     K    L+  S+  ++I MY+KCG I  A +VFD +  K +
Sbjct: 512 KGCADLGANKLGDQIIGRTVKVGLILDT-SVANAVITMYSKCGRILEARKVFDFLNVKDI 570

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
            SWNAMI+G + HG   +A+ +F  ++  G +PD I++V VLS C+H+GL+  G+ YF+ 
Sbjct: 571 VSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDM 630

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
           M + + ISP L+H+ CMVDLLGRAG   EA+ L+  M MKP A +W +LL AC++HG  E
Sbjct: 631 MKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNE 690

Query: 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
           L E  AKH+ EL+  + G+Y+L++ +YA AG+ DD A IR  + DKG+KK PG S +EV 
Sbjct: 691 LAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVN 750

Query: 582 SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
           + VH F   D  HPQ   I + LDE+   + + G+V   S             +  HHSE
Sbjct: 751 NKVHVFKADDVSHPQVIAIRKKLDELMEKIARLGYVRTDS-----------PRSEIHHSE 799

Query: 642 KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
           KLA+A+GL+S      I I+KNLR+CG+CH+  KLIS +  RE + RD  RFHHF  G+C
Sbjct: 800 KLAVAFGLMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTGREFVIRDAVRFHHFNGGSC 859

Query: 702 SCNDYW 707
           SC DYW
Sbjct: 860 SCGDYW 865



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/439 (25%), Positives = 216/439 (49%), Gaps = 34/439 (7%)

Query: 33  SLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           SL   ++ ++++  KQ+H+Q+I+       +  S L+E+ A    G    A  VF ++ +
Sbjct: 276 SLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYA--KCGCFKEAKGVFNSLHD 333

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            N V W  +I G         +++ + +M       + +    ++  C     +  G+Q+
Sbjct: 334 RNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQL 393

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H+  LK G      V  SLI+MYA+   L+SA  +F   + +D VS+T++IT ++  G +
Sbjct: 394 HSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNI 453

Query: 213 DDARQLFDEMPIR------------------------------EENFVPNESTVVTVLSA 242
             AR+ FD M  +                              E++  P+  T VT+   
Sbjct: 454 AKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKG 513

Query: 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
           CA +G+ +LG+ +       GL  +  V NA+I MYSKCG +++AR +F+ +  +D++SW
Sbjct: 514 CADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSW 573

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
           N MI GY+     K+A+ +F  +L+   +P+ +++++VL  C++ G +  GK     + +
Sbjct: 574 NAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKR 633

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHGKADKAL 421
            H     +  ++ ++D+  + G++  A+ + D M  K  A  W A++S   +HG  + A 
Sbjct: 634 VHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELA- 692

Query: 422 SLFSRMIGEGLQPDDITFV 440
            L ++ + E   PD  +++
Sbjct: 693 ELAAKHVFELDSPDSGSYM 711



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 123/509 (24%), Positives = 226/509 (44%), Gaps = 75/509 (14%)

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG-FVPNTYTFPF 135
            G LS A+ +F  +   +   WN ++ G+  S   + +++ +V M  SG   PN +TF +
Sbjct: 84  LGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAY 143

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
            +KSC  +   S   Q+   V K G + D  V  +L++M+ + G ++ A  +F +     
Sbjct: 144 AMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPT 203

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIRE----------------------------- 226
                +++ GY     +D A +LFD MP R+                             
Sbjct: 204 IFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQS 263

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           +    + +T  + L+ACA + SL  G  + + +  +    + +V +AL+++Y+KCG   +
Sbjct: 264 KGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKE 323

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A+ +F S+  R+ ++W V+I G+     + E++ LF QM    +  +     +++  C  
Sbjct: 324 AKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCS 383

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV-------------- 392
              L LG+ +H+   K+ Q +  V +  SLI MYAKC N+++AE +              
Sbjct: 384 RMDLCLGRQLHSLCLKSGQ-IQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTS 442

Query: 393 -----------------FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE-GLQP 434
                            FDGM  K + +WNAM+     HG  +  L +++ M+ E  ++P
Sbjct: 443 MITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRP 502

Query: 435 DDITFVGVLSAC-----NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489
           D +T+V +   C     N  G   IGR     +I D  ++        ++ +  + G   
Sbjct: 503 DWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVA------NAVITMYSKCGRIL 556

Query: 490 EAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           EA  +   + +K D   W +++     HG
Sbjct: 557 EARKVFDFLNVK-DIVSWNAMITGYSQHG 584



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 112/446 (25%), Positives = 202/446 (45%), Gaps = 65/446 (14%)

Query: 130 TYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR-LVF 188
           T  F   L+SC    A++  + +H  ++ +GL S  F+  +L++ Y   G L  AR L+ 
Sbjct: 4   TQAFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLL 63

Query: 189 NKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE---------------------E 227
              +  + +++  ++ GY   G L DA +LF  MP R+                     E
Sbjct: 64  TDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLE 123

Query: 228 NFV---------PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMY 278
           +FV         PN  T    + +C  +G   L   +  +++  G   +  V  AL+DM+
Sbjct: 124 SFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMF 183

Query: 279 SKCG--DLVK-----------------------------ARDLFESIEKRDVISWNVMIG 307
            +CG  DL                               A +LF+S+ +RDV+SWN+M+ 
Sbjct: 184 VRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVS 243

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
             + +   +EAL +   M    +  +  T+ S L ACA L +L  GK +HA + +N   +
Sbjct: 244 ALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCI 303

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
           +   + ++L+++YAKCG  K A+ VF+ +  +   +W  +I+G   HG   +++ LF++M
Sbjct: 304 DPY-VASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQM 362

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
             E +  D      ++S C     L +GRQ  +  ++  +I   +     ++ +  +   
Sbjct: 363 RAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVS-NSLISMYAKCDN 421

Query: 488 FDEAEALLKTMEMKPDAAIWTSLLGA 513
              AE++ + M  K D   WTS++ A
Sbjct: 422 LQSAESIFRFMNEK-DIVSWTSMITA 446


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 247/666 (37%), Positives = 384/666 (57%), Gaps = 47/666 (7%)

Query: 74  VSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTF 133
           V  +G + +AL +F+++ E + V WN ++   S S     A+   V M   G   ++ T+
Sbjct: 235 VKTYG-VDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTY 293

Query: 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL 193
              L +CA++S++  GKQ+HA V++     DP+V ++L+ +YA++G  + A+ VFN    
Sbjct: 294 TSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHD 353

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
           R+ V++T LI+G+   G   ++ +LF++M  R E    ++  + T++S C     L LG 
Sbjct: 354 RNNVAWTVLISGFLQYGCFTESVELFNQM--RAELMTLDQFALATLISGCCSRMDLCLGR 411

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKC-------------------------------G 282
            + SL    G    + V+N+LI MY+KC                               G
Sbjct: 412 QLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVG 471

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVL 341
           ++ KAR+ F+ + +++VI+WN M+G Y      ++ L +++ ML +  + P+ VT++++ 
Sbjct: 472 NVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLF 531

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
             CA LGA  LG  I     K    ++  S+  ++I MY+KCG I  A +VFD +  K +
Sbjct: 532 KGCADLGANKLGDQIIGRTVKVGLIIDT-SVANAVITMYSKCGRILEARKVFDFLNVKDI 590

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
            SWNAMI+G + HG   +A+ +F  ++  G +PD I++V VLS C+H+GL+  G+ YF+ 
Sbjct: 591 VSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDM 650

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
           M + + ISP L+H+ CMVDLLGRAG   EA+ L+  M MKP A +W +LL AC++HG  E
Sbjct: 651 MKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNE 710

Query: 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
           L E  AKH+ EL+  + G+Y+L++ +YA AG+ DD A IR  + DKG+KK PG S +EV 
Sbjct: 711 LAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVD 770

Query: 582 SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
           + VH F   D  HPQ   I + LDE+   + + G+V   S             +  HHSE
Sbjct: 771 NKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVRTDS-----------TRSEIHHSE 819

Query: 642 KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
           KLA+A+GL++      I I+KNLR+CG+CH+  KLIS +  RE + RD  RFHHF  G+C
Sbjct: 820 KLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSC 879

Query: 702 SCNDYW 707
           SC DYW
Sbjct: 880 SCGDYW 885



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/439 (26%), Positives = 218/439 (49%), Gaps = 34/439 (7%)

Query: 33  SLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           SL   ++ ++++  KQ+H+Q+I+   H   +  S L+E+ A S  G    A  VF ++ +
Sbjct: 296 SLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKS--GCFKEAKGVFNSLHD 353

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            N V W  +I G         +++ + +M       + +    ++  C     +  G+Q+
Sbjct: 354 RNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQL 413

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H+  LK G      V  SLI+MYA+   L+SA  +F   + +D VS+T++IT Y+  G +
Sbjct: 414 HSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNV 473

Query: 213 DDARQLFDEMP------------------------------IREENFVPNESTVVTVLSA 242
             AR+ FD M                               + EE   P+  T VT+   
Sbjct: 474 AKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKG 533

Query: 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
           CA +G+ +LG+ +       GL  +  V NA+I MYSKCG +++AR +F+ +  +D++SW
Sbjct: 534 CADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSW 593

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
           N MI GY+     K+A+ +F  +L+   +P+ +++++VL  C++ G +  GK+    + +
Sbjct: 594 NAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKR 653

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHGKADKAL 421
            H     +  ++ ++D+  + G++  A+ + D M  K  A  W A++S   +HG  + A 
Sbjct: 654 AHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELA- 712

Query: 422 SLFSRMIGEGLQPDDITFV 440
            L ++ + E   PD  +++
Sbjct: 713 ELAAKHVFELDSPDSGSYM 731



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 119/510 (23%), Positives = 223/510 (43%), Gaps = 73/510 (14%)

Query: 75  SPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG-FVPNTYTF 133
           +  G LS A+ +F  +   +   WN ++ G+  S   +V+++ ++ M  SG   PN +T 
Sbjct: 102 AKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTL 161

Query: 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL 193
              +KSC  +   S   Q+ A V K   + D  V  +L++M+ + G ++ A  +F +   
Sbjct: 162 ACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKE 221

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIRE--------------------------- 226
                  +++ GY     +D A +LFD MP R+                           
Sbjct: 222 PTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDM 281

Query: 227 --ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
             +    + +T  + L+ACA + SL  G  + + +  +    + +V +AL+++Y+K G  
Sbjct: 282 QSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCF 341

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
            +A+ +F S+  R+ ++W V+I G+     + E++ LF QM    +  +     +++  C
Sbjct: 342 KEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGC 401

Query: 345 AYLGALDLGKWIHAYIDKNHQ---------------KLNN---------------VSLWT 374
                L LG+ +H+   K+ Q               K +N               +  WT
Sbjct: 402 CSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWT 461

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG-LQ 433
           S+I  Y++ GN+  A + FDGM  K + +WNAM+     HG  +  L ++  M+ E  ++
Sbjct: 462 SMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVR 521

Query: 434 PDDITFVGVLSAC-----NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488
           PD +T+V +   C     N  G   IGR     +I D  ++        ++ +  + G  
Sbjct: 522 PDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVA------NAVITMYSKCGRI 575

Query: 489 DEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
            EA  +   + +K D   W +++     HG
Sbjct: 576 LEARKVFDFLNVK-DIVSWNAMITGYSQHG 604



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 111/446 (24%), Positives = 202/446 (45%), Gaps = 65/446 (14%)

Query: 130 TYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR-LVF 188
           T  F   L+SC    A++  + +H  ++ +GL S  F+  +L++ Y   G L  AR L+ 
Sbjct: 24  TQAFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLL 83

Query: 189 NKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE---------------------E 227
              +  + +++  ++ GYA  G L DA +LF  MP R+                     E
Sbjct: 84  MDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLE 143

Query: 228 NFV---------PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMY 278
            F+         PN  T+   + +C  +G   L   + ++++      +  V  AL+DM+
Sbjct: 144 TFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMF 203

Query: 279 SKCG--DLVK-----------------------------ARDLFESIEKRDVISWNVMIG 307
            +CG  DL                               A +LF+S+ +RDV+SWN+M+ 
Sbjct: 204 VRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVS 263

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
             + +   +EAL +   M    +  +  T+ S L ACA L +L  GK +HA + +N   +
Sbjct: 264 ALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHI 323

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
           +   + ++L+++YAK G  K A+ VF+ +  +   +W  +ISG   +G   +++ LF++M
Sbjct: 324 DPY-VASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQM 382

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
             E +  D      ++S C     L +GRQ  +  ++  +I   +     ++ +  +   
Sbjct: 383 RAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVS-NSLISMYAKCDN 441

Query: 488 FDEAEALLKTMEMKPDAAIWTSLLGA 513
              AEA+ + M  K D   WTS++ A
Sbjct: 442 LQSAEAIFRFMNEK-DIVSWTSMITA 466



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 139/342 (40%), Gaps = 75/342 (21%)

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKAR--------------------------------DL 290
           GL S + + N L+  Y  CG L  AR                                +L
Sbjct: 54  GLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVEL 113

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE-PNDVTFLSVLPACAYLGA 349
           F  +  RDV SWN ++ GY  +  Y  +L  F  M +S    PN  T    + +C  LG 
Sbjct: 114 FGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGW 173

Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE------------------- 390
             L   + A + K   + ++  +  +L+DM+ +CG +  A                    
Sbjct: 174 HSLALQLLAMVQKFDSQ-DDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLA 232

Query: 391 ------------QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
                       ++FD M  + + SWN M+S L+  G+  +AL +   M  +G++ D  T
Sbjct: 233 GYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTT 292

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY--GCMVDLLGRAGLFDEAEALLK 496
           +   L+AC     L  G+Q    +I++    P +  Y    +V+L  ++G F EA+ +  
Sbjct: 293 YTSSLTACARLSSLRWGKQLHAQVIRNL---PHIDPYVASALVELYAKSGCFKEAKGVFN 349

Query: 497 TMEMKPDAAIWTSLLGACRVHG----RLELGESVAKHLLELE 534
           ++  + + A WT L+     +G     +EL   +   L+ L+
Sbjct: 350 SLHDRNNVA-WTVLISGFLQYGCFTESVELFNQMRAELMTLD 390


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 254/688 (36%), Positives = 382/688 (55%), Gaps = 79/688 (11%)

Query: 85  LVFETIREPNQVIWNNIIRGHSLSSSPV-VAIKFYVRMILSGFVPNTYTFPFILKSCAKI 143
           LV +T  E + VI  +I+  ++  +S + +AIKF+  M+      N YT+  +      I
Sbjct: 248 LVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVER----NEYTWSTM------I 297

Query: 144 SAISEGKQIHAHVLKLGLESDPF----VHTSLINMYAQNGELESARLVFNKSSLRDAVSY 199
           +A+S G +I A +   G   DP       T+L+   A+ G +  AR++F +      VS+
Sbjct: 298 AALSHGGRIDAAIAVYG--RDPVKSIPSQTALLTGLARCGRITEARILFEQIPDPIVVSW 355

Query: 200 TALITGYASRGYLDDARQLFDEMPIRE------------ENFVPNES------------- 234
            A+ITGY   G +D+A++LFD MP R             +N    E+             
Sbjct: 356 NAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGML 415

Query: 235 ----TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD------- 283
               ++ +   AC+H+G+LE G  V SL    G   N +V NALI MY KC +       
Sbjct: 416 PSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQV 475

Query: 284 ------------------------LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEAL 319
                                   L  AR +F+++  RDV+SW  +I  Y       EA+
Sbjct: 476 FNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAV 535

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
             F+ ML  + +PN      +L  C  LG+  LG+ IH    K H   + + +  +L+ M
Sbjct: 536 EFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIK-HGMDSELIVANALMSM 594

Query: 380 YAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439
           Y KCG    + +VFD M  + + +WN  I+G A HG   +A+ ++  M   G+ P+++TF
Sbjct: 595 YFKCG-CADSHKVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTF 653

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME 499
           VG+L+AC+HAGL+D G Q+F +M +DY ++P L+HY CMVDLLGR G    AE  +  M 
Sbjct: 654 VGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMP 713

Query: 500 MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559
           ++PD  IW++LLGAC++H   E+G   A+ L   EP N G YV+LSN+Y+  G W +VA 
Sbjct: 714 IEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAE 773

Query: 560 IRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPD 619
           +R  +  +G+ K PGCS +++ + VH F+ GDK H + + I   L ++  LL  +G+VPD
Sbjct: 774 LRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLLRGTGYVPD 833

Query: 620 TSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISK 679
           T  VL+D+DEE KE +L +HSEKLA+AYGL+ T  G  I+I+KNLR+CG+CH+  K +S 
Sbjct: 834 TEFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIKFVSH 893

Query: 680 IFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +  R+I  RD NRFHHF++G+CSC D+W
Sbjct: 894 VTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 121/559 (21%), Positives = 236/559 (42%), Gaps = 67/559 (11%)

Query: 70  EICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPN 129
            I  ++  G L  A  VF+ +   + + WN++I  +  +S  +   +     I  G   N
Sbjct: 39  RIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYC-NSGMLEDARILFDAISGG---N 94

Query: 130 TYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN 189
             T   +L   A++  + + +++   +     E +     ++++ Y QNG++  AR +F+
Sbjct: 95  VRTATILLSGYARLGRVLDARRVFDGMP----ERNTVAWNAMVSCYVQNGDITMARRLFD 150

Query: 190 KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR------------------------ 225
               RD  S+ +++TGY     + DA  LF +MP R                        
Sbjct: 151 AMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDI 210

Query: 226 -----EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK 280
                 E   P++S   +VLSA   +  L +   +  L+   G  S++ +  +++++Y++
Sbjct: 211 FRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTR 270

Query: 281 -CGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS 339
               L  A   F+ + +R+  +W+ MI   +H      A+ ++ +    +I P+    L+
Sbjct: 271 DASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSI-PSQTALLT 329

Query: 340 VLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK 399
            L  C        G+   A I         V  W ++I  Y + G +  A+++FD M ++
Sbjct: 330 GLARC--------GRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFR 381

Query: 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF 459
              SW  MI+G A +G++++AL L   +   G+ P   +      AC+H G L+ GRQ  
Sbjct: 382 NTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVH 441

Query: 460 NAMIQDYKISPKLQHYGC--MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
           +  +   K   +   Y C  ++ + G+    +    +   M +K D   W S + A   +
Sbjct: 442 SLAV---KAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVK-DTVSWNSFIAALVQN 497

Query: 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD-VATIRTRLNDKGMKKVP--- 573
             LE    +  ++L     +  ++  + + YA A R D+ V   +T L++      P   
Sbjct: 498 NMLEDARHIFDNMLS---RDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILT 554

Query: 574 -------GCSSIEVGSVVH 585
                  G  S ++G  +H
Sbjct: 555 ILLSVCGGLGSAKLGQQIH 573



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 173/390 (44%), Gaps = 53/390 (13%)

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
           D   H++ I   A+ G L  AR VF+    RD +++ ++I+ Y + G L+DAR LFD + 
Sbjct: 32  DKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAIS 91

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
                   N  T   +LS  A +G +     V   +       N    NA++  Y + GD
Sbjct: 92  ------GGNVRTATILLSGYARLGRVLDARRVFDGMPER----NTVAWNAMVSCYVQNGD 141

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI------------- 330
           +  AR LF+++  RDV SWN M+ GY H+    +A  LF+QM Q N+             
Sbjct: 142 ITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRI 201

Query: 331 ------------------EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
                              P+   F SVL A   L  L + + +   + K   + ++V +
Sbjct: 202 EQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFE-SDVVI 260

Query: 373 WTSLIDMYAK-CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
            TS++++Y +    +  A + FDGM  +   +W+ MI+ L+  G+ D A++++ R   + 
Sbjct: 261 GTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKS 320

Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
           + P     +  L+ C   G +   R  F   I D    P +  +  M+    + G+ DEA
Sbjct: 321 I-PSQTALLTGLARC---GRITEARILFE-QIPD----PIVVSWNAMITGYMQNGMVDEA 371

Query: 492 EALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
           + L   M  + +   W  ++     +GR E
Sbjct: 372 KELFDRMPFR-NTISWAGMIAGYAQNGRSE 400



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 138/278 (49%), Gaps = 13/278 (4%)

Query: 34  LALLSKCTNMQNIKQVHSQI-IKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           +++  KC NM+ ++QV +++ +K  +    F       I A+     L  A  +F+ +  
Sbjct: 460 ISMYGKCRNMEYVRQVFNRMRVKDTVSWNSF-------IAALVQNNMLEDARHIFDNMLS 512

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V W  II  ++ +     A++F+  M+     PN+     +L  C  + +   G+QI
Sbjct: 513 RDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQI 572

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H   +K G++S+  V  +L++MY + G  +S + VF+    RD  ++   ITG A  G  
Sbjct: 573 HTVAIKHGMDSELIVANALMSMYFKCGCADSHK-VFDSMEERDIFTWNTFITGCAQHGLG 631

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVT 271
            +A ++++ M       +PNE T V +L+AC+H G ++ G  +  S+   +GL   L   
Sbjct: 632 REAIKMYEHM--ESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHY 689

Query: 272 NALIDMYSKCGDLVKARD-LFESIEKRDVISWNVMIGG 308
             ++D+  + GD+  A   +++   + D + W+ ++G 
Sbjct: 690 ACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGA 727


>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
 gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 586

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 213/448 (47%), Positives = 311/448 (69%), Gaps = 6/448 (1%)

Query: 265 GSNLHVT--NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
           G+ L V   N ++  Y K GDL  AR++F  + +R+++SW+ M+       ++ EAL +F
Sbjct: 140 GAALDVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVF 199

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH--QKLNNVSLWTSLIDMY 380
            +M++    P+ V  +SVL ACA+LGA++ G+W+H Y++      +  N+ L T+L+DMY
Sbjct: 200 DRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMY 259

Query: 381 AKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFV 440
            KCG ++ A QVFDG+  + +  WNAMI GLAM+G  ++AL LF RM+ +G  P++ TF+
Sbjct: 260 CKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFI 319

Query: 441 GVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEM 500
            VL AC H G +D G++ F +M QDY I P+ +HYGC+ DLLGRAG  +EAEALL  M M
Sbjct: 320 AVLCACTHTGRVDEGKRVFKSM-QDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPM 378

Query: 501 KPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATI 560
           +P A+ W +L+ +C++H  + +GE V K L+ELEP + G YV+L N+YA  GRW++  TI
Sbjct: 379 EPHASQWGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTI 438

Query: 561 RTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDT 620
           R  + D+G KK  G S IE+  +VHEF+ GD  HP ++ IY +L++I+  L+  G+V DT
Sbjct: 439 RQMMEDRGAKKETGLSFIELNGLVHEFISGDTRHPLTRKIYALLEDIERRLQLIGYVKDT 498

Query: 621 SEVLYDMDEEWKEG-ALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISK 679
           S+V+ DMD+E  +G ALS+HSE+LA+A+G+++   G  IRIVKNLRVC +CH  +KL+SK
Sbjct: 499 SQVIMDMDDEEDKGIALSYHSERLALAFGILNIPQGVPIRIVKNLRVCRDCHVHSKLVSK 558

Query: 680 IFNREIIARDRNRFHHFKDGNCSCNDYW 707
           ++ REII RDR+RFH F+DG CSCNDYW
Sbjct: 559 LYEREIIVRDRHRFHVFRDGVCSCNDYW 586



 Score =  162 bits (409), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 96/272 (35%), Positives = 149/272 (54%), Gaps = 9/272 (3%)

Query: 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREEN 228
            ++++ Y + G+L +AR VF +   R+ VS++A++      G   +A  +FD M +REE 
Sbjct: 149 NTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRM-MREE- 206

Query: 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS---NLHVTNALIDMYSKCGDLV 285
           F P+   +V+VL ACAH+G++E G WV   +E    G    NL +  AL+DMY KCG + 
Sbjct: 207 FRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCME 266

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
            A  +F+ + +RDV+ WN MIGG       + AL LFR+MLQ    PN+ TF++VL AC 
Sbjct: 267 DAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACT 326

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-W 404
           + G +D GK +   +     K      +  L D+  + GN++ AE +   M  +  AS W
Sbjct: 327 HTGRVDEGKRVFKSMQDYGIKPQR-EHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQW 385

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
            A++S   MH   +    +  R+I   L+P D
Sbjct: 386 GALMSSCQMHNDINVGERVGKRLI--ELEPYD 415



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 109/217 (50%), Gaps = 5/217 (2%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           GDL  A  VF  + E N V W+ ++     +     A+  + RM+   F P+      +L
Sbjct: 159 GDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVL 218

Query: 138 KSCAKISAISEGKQIHAHVLK---LGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
           K+CA + A+  G+ +H ++      G   +  + T+L++MY + G +E A  VF+    R
Sbjct: 219 KACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRR 278

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
           D V + A+I G A  GY + A +LF  M   ++ F+PNEST + VL AC H G ++ G  
Sbjct: 279 DVVLWNAMIGGLAMNGYGERALELFRRML--QKGFMPNESTFIAVLCACTHTGRVDEGKR 336

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLF 291
           V   ++ +G+         L D+  + G++ +A  L 
Sbjct: 337 VFKSMQDYGIKPQREHYGCLADLLGRAGNVEEAEALL 373


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 247/666 (37%), Positives = 384/666 (57%), Gaps = 47/666 (7%)

Query: 74  VSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTF 133
           V  +G + +AL +F+++ E + V WN ++   S S     A+   V M   G   ++ T+
Sbjct: 215 VKTYG-VDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTY 273

Query: 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL 193
              L +CA++S++  GKQ+HA V++     DP+V ++L+ +YA++G  + A+ VFN    
Sbjct: 274 TSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHD 333

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
           R+ V++T LI+G+   G   ++ +LF++M  R E    ++  + T++S C     L LG 
Sbjct: 334 RNNVAWTVLISGFLQYGCFTESVELFNQM--RAELMTLDQFALATLISGCCSRMDLCLGR 391

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKC-------------------------------G 282
            + SL    G    + V+N+LI MY+KC                               G
Sbjct: 392 QLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVG 451

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVL 341
           ++ KAR+ F+ + +++VI+WN M+G Y      ++ L +++ ML +  + P+ VT++++ 
Sbjct: 452 NVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLF 511

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
             CA LGA  LG  I     K    ++  S+  ++I MY+KCG I  A +VFD +  K +
Sbjct: 512 KGCADLGANKLGDQIIGRTVKVGLIIDT-SVANAVITMYSKCGRILEARKVFDFLNVKDI 570

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
            SWNAMI+G + HG   +A+ +F  ++  G +PD I++V VLS C+H+GL+  G+ YF+ 
Sbjct: 571 VSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDM 630

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
           M + + ISP L+H+ CMVDLLGRAG   EA+ L+  M MKP A +W +LL AC++HG  E
Sbjct: 631 MKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNE 690

Query: 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
           L E  AKH+ EL+  + G+Y+L++ +YA AG+ DD A IR  + DKG+KK PG S +EV 
Sbjct: 691 LAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVD 750

Query: 582 SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
           + VH F   D  HPQ   I + LDE+   + + G+V   S             +  HHSE
Sbjct: 751 NKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVRTDS-----------TRSEIHHSE 799

Query: 642 KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
           KLA+A+GL++      I I+KNLR+CG+CH+  KLIS +  RE + RD  RFHHF  G+C
Sbjct: 800 KLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSC 859

Query: 702 SCNDYW 707
           SC DYW
Sbjct: 860 SCGDYW 865



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/439 (26%), Positives = 218/439 (49%), Gaps = 34/439 (7%)

Query: 33  SLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           SL   ++ ++++  KQ+H+Q+I+   H   +  S L+E+ A S  G    A  VF ++ +
Sbjct: 276 SLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKS--GCFKEAKGVFNSLHD 333

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            N V W  +I G         +++ + +M       + +    ++  C     +  G+Q+
Sbjct: 334 RNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQL 393

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H+  LK G      V  SLI+MYA+   L+SA  +F   + +D VS+T++IT Y+  G +
Sbjct: 394 HSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNV 453

Query: 213 DDARQLFDEMP------------------------------IREENFVPNESTVVTVLSA 242
             AR+ FD M                               + EE   P+  T VT+   
Sbjct: 454 AKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKG 513

Query: 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
           CA +G+ +LG+ +       GL  +  V NA+I MYSKCG +++AR +F+ +  +D++SW
Sbjct: 514 CADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSW 573

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
           N MI GY+     K+A+ +F  +L+   +P+ +++++VL  C++ G +  GK+    + +
Sbjct: 574 NAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKR 633

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHGKADKAL 421
            H     +  ++ ++D+  + G++  A+ + D M  K  A  W A++S   +HG  + A 
Sbjct: 634 AHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELA- 692

Query: 422 SLFSRMIGEGLQPDDITFV 440
            L ++ + E   PD  +++
Sbjct: 693 ELAAKHVFELDSPDSGSYM 711



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 119/510 (23%), Positives = 223/510 (43%), Gaps = 73/510 (14%)

Query: 75  SPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG-FVPNTYTF 133
           +  G LS A+ +F  +   +   WN ++ G+  S   +V+++ ++ M  SG   PN +T 
Sbjct: 82  AKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTL 141

Query: 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL 193
              +KSC  +   S   Q+ A V K   + D  V  +L++M+ + G ++ A  +F +   
Sbjct: 142 ACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKE 201

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIRE--------------------------- 226
                  +++ GY     +D A +LFD MP R+                           
Sbjct: 202 PTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDM 261

Query: 227 --ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
             +    + +T  + L+ACA + SL  G  + + +  +    + +V +AL+++Y+K G  
Sbjct: 262 QSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCF 321

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
            +A+ +F S+  R+ ++W V+I G+     + E++ LF QM    +  +     +++  C
Sbjct: 322 KEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGC 381

Query: 345 AYLGALDLGKWIHAYIDKNHQ---------------KLNN---------------VSLWT 374
                L LG+ +H+   K+ Q               K +N               +  WT
Sbjct: 382 CSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWT 441

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG-LQ 433
           S+I  Y++ GN+  A + FDGM  K + +WNAM+     HG  +  L ++  M+ E  ++
Sbjct: 442 SMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVR 501

Query: 434 PDDITFVGVLSAC-----NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488
           PD +T+V +   C     N  G   IGR     +I D  ++        ++ +  + G  
Sbjct: 502 PDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVA------NAVITMYSKCGRI 555

Query: 489 DEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
            EA  +   + +K D   W +++     HG
Sbjct: 556 LEARKVFDFLNVK-DIVSWNAMITGYSQHG 584



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 111/446 (24%), Positives = 202/446 (45%), Gaps = 65/446 (14%)

Query: 130 TYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR-LVF 188
           T  F   L+SC    A++  + +H  ++ +GL S  F+  +L++ Y   G L  AR L+ 
Sbjct: 4   TQAFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLL 63

Query: 189 NKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE---------------------E 227
              +  + +++  ++ GYA  G L DA +LF  MP R+                     E
Sbjct: 64  MDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLE 123

Query: 228 NFV---------PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMY 278
            F+         PN  T+   + +C  +G   L   + ++++      +  V  AL+DM+
Sbjct: 124 TFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMF 183

Query: 279 SKCG--DLVK-----------------------------ARDLFESIEKRDVISWNVMIG 307
            +CG  DL                               A +LF+S+ +RDV+SWN+M+ 
Sbjct: 184 VRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVS 243

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
             + +   +EAL +   M    +  +  T+ S L ACA L +L  GK +HA + +N   +
Sbjct: 244 ALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHI 303

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
           +   + ++L+++YAK G  K A+ VF+ +  +   +W  +ISG   +G   +++ LF++M
Sbjct: 304 DPY-VASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQM 362

Query: 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
             E +  D      ++S C     L +GRQ  +  ++  +I   +     ++ +  +   
Sbjct: 363 RAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVS-NSLISMYAKCDN 421

Query: 488 FDEAEALLKTMEMKPDAAIWTSLLGA 513
              AEA+ + M  K D   WTS++ A
Sbjct: 422 LQSAEAIFRFMNEK-DIVSWTSMITA 446



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 139/342 (40%), Gaps = 75/342 (21%)

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKAR--------------------------------DL 290
           GL S + + N L+  Y  CG L  AR                                +L
Sbjct: 34  GLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVEL 93

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE-PNDVTFLSVLPACAYLGA 349
           F  +  RDV SWN ++ GY  +  Y  +L  F  M +S    PN  T    + +C  LG 
Sbjct: 94  FGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGW 153

Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE------------------- 390
             L   + A + K   + ++  +  +L+DM+ +CG +  A                    
Sbjct: 154 HSLALQLLAMVQKFDSQ-DDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLA 212

Query: 391 ------------QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
                       ++FD M  + + SWN M+S L+  G+  +AL +   M  +G++ D  T
Sbjct: 213 GYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTT 272

Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY--GCMVDLLGRAGLFDEAEALLK 496
           +   L+AC     L  G+Q    +I++    P +  Y    +V+L  ++G F EA+ +  
Sbjct: 273 YTSSLTACARLSSLRWGKQLHAQVIRNL---PHIDPYVASALVELYAKSGCFKEAKGVFN 329

Query: 497 TMEMKPDAAIWTSLLGACRVHG----RLELGESVAKHLLELE 534
           ++  + + A WT L+     +G     +EL   +   L+ L+
Sbjct: 330 SLHDRNNVA-WTVLISGFLQYGCFTESVELFNQMRAELMTLD 370


>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/582 (41%), Positives = 351/582 (60%), Gaps = 31/582 (5%)

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGY--- 206
           KQIH  ++  GL    +  + LI + +    L  A  +FN  S      Y  LI+     
Sbjct: 166 KQIHTQIITTGLSFQTYCLSHLIKI-SSKFNLPYAFKIFNYISNPTIFLYNTLISSLINQ 224

Query: 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA------HMGSLELGNWVCSLIE 260
            ++  +  A  L++++ +  +N  PN  T  ++  AC       H G L L   V   ++
Sbjct: 225 TNQNQIHLAFSLYNKI-LTNKNLQPNSFTFPSLFKACCSNQSWFHYGPL-LHTHVLKFLQ 282

Query: 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT-------- 312
                 +  V  +L++ Y+K G +  +R +F+ I + D+ +WNV++  Y  +        
Sbjct: 283 P---PFDNFVQASLLNFYAKYGKMCVSRYIFDRINEPDLATWNVILNAYARSSSYHSYSN 339

Query: 313 ----SDYK-EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
               +D+  E+L LFR M    I PN+VT ++++ AC+ LGA+  G W+H ++ +N  K+
Sbjct: 340 SFDDADFSLESLYLFRDMQVIGIRPNEVTIVALISACSNLGAVSQGFWVHCFVLRNKIKM 399

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS--WNAMISGLAMHGKADKALSLFS 425
           N   + T+ +DMY+KCG +  A QVFD M      S  + AMI G A+HG  ++AL L+ 
Sbjct: 400 NRF-VGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAVHGYGNQALELYR 458

Query: 426 RMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485
           +M  +GL PD  TFV  + AC+H GL++ G + F +M + + + PKL+HYGC++DLLGRA
Sbjct: 459 KMKFKGLVPDSATFVVTMFACSHVGLVEEGLEIFKSMKEVHGVEPKLEHYGCLIDLLGRA 518

Query: 486 GLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545
           G   EAE  L  M MKP+A +W SLLGA R+HG L +GE     L+ELEPE  G YVLLS
Sbjct: 519 GRLKEAEEWLADMPMKPNAVLWRSLLGAARIHGNLGVGEVALTKLIELEPETSGNYVLLS 578

Query: 546 NMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLD 605
           NMYA  GR +DV  +R  +   G+ K+PG S +E+   +HEFL GD+ HP SK IY  + 
Sbjct: 579 NMYASVGRVNDVKRVRKLMKHHGVNKLPGFSLVEIKGAMHEFLTGDRSHPFSKEIYLKIA 638

Query: 606 EIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLR 665
           EI++ LE+ G    TSE L+D++EE KEG LS+HSE+LAIA+ LI++     IRI+KNLR
Sbjct: 639 EINSRLEEYGHKARTSEALFDLEEEDKEGVLSYHSERLAIAFALIASPSSLAIRIIKNLR 698

Query: 666 VCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           VCG+CH+ TKLIS  ++REII RDRNRFHHFKDG+CSC DYW
Sbjct: 699 VCGDCHAFTKLISVAYHREIIVRDRNRFHHFKDGSCSCLDYW 740



 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/413 (29%), Positives = 205/413 (49%), Gaps = 24/413 (5%)

Query: 24  PYKLLQNQPSLALLS-KCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSY 82
           P   + N P+L  L  KC N   +KQ+H+QII TGL    + LS LI+I   S   +L Y
Sbjct: 142 PKNHIFNHPTLQTLQQKCNNFNTLKQIHTQIITTGLSFQTYCLSHLIKI---SSKFNLPY 198

Query: 83  ALLVFETIREPNQVIWNNIIR---GHSLSSSPVVAIKFYVRMILS-GFVPNTYTFPFILK 138
           A  +F  I  P   ++N +I      +  +   +A   Y +++ +    PN++TFP + K
Sbjct: 199 AFKIFNYISNPTIFLYNTLISSLINQTNQNQIHLAFSLYNKILTNKNLQPNSFTFPSLFK 258

Query: 139 S-CAKISAISEGKQIHAHVLK-LGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           + C+  S    G  +H HVLK L    D FV  SL+N YA+ G++  +R +F++ +  D 
Sbjct: 259 ACCSNQSWFHYGPLLHTHVLKFLQPPFDNFVQASLLNFYAKYGKMCVSRYIFDRINEPDL 318

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFV-----------PNESTVVTVLSACAH 245
            ++  ++  YA           FD+     E+             PNE T+V ++SAC++
Sbjct: 319 ATWNVILNAYARSSSYHSYSNSFDDADFSLESLYLFRDMQVIGIRPNEVTIVALISACSN 378

Query: 246 MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK--RDVISWN 303
           +G++  G WV   +  + +  N  V  A +DMYSKCG L  A  +F+ + +  RD   + 
Sbjct: 379 LGAVSQGFWVHCFVLRNKIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYT 438

Query: 304 VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363
            MIGG+       +AL L+R+M    + P+  TF+  + AC+++G ++ G  I   + + 
Sbjct: 439 AMIGGFAVHGYGNQALELYRKMKFKGLVPDSATFVVTMFACSHVGLVEEGLEIFKSMKEV 498

Query: 364 HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHG 415
           H     +  +  LID+  + G +K AE+    M  K  A  W +++    +HG
Sbjct: 499 HGVEPKLEHYGCLIDLLGRAGRLKEAEEWLADMPMKPNAVLWRSLLGAARIHG 551


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/563 (42%), Positives = 358/563 (63%), Gaps = 9/563 (1%)

Query: 150 KQIHAHVLK--LGLESDPFVHTSLINMYAQN--GELESARLVFNKSSLRDAVSYTALITG 205
           +QIHA +L     + S  F+ + +++  A +  G  + AR +F++       +Y ++I G
Sbjct: 5   RQIHARILTHVPPISSVSFLISKILSFAALSPFGNFDYARKIFSQIPNPGIFAYNSVIRG 64

Query: 206 -YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
              ++    +   LF +M + +    PN  T+  VL AC+ + +LE G  + + I   G 
Sbjct: 65  CLYTKIPSKEPIHLFKDM-VGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQILRSGF 123

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
            S+ +V ++L++ YSKC ++  AR +F+ I +R+++ W+ M+ GY       EAL++FR+
Sbjct: 124 SSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEALIMFRE 183

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           M    IEP++V+ + VL ACA +GALD+GKW+HAYI K    ++ + L T+LI+MYAKCG
Sbjct: 184 MQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVD-LELNTALINMYAKCG 242

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
            I+ A ++FD M  K   +W++MI GLA+HG A+ AL++FSRM     +P+ +TF+G+LS
Sbjct: 243 CIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILS 302

Query: 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504
           AC H GL+  G++Y+++M++   I P ++HYGCMVDLL R GL DEA      +   PD 
Sbjct: 303 ACAHGGLVSDGKRYWSSMLE-LGIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIP-TPDP 360

Query: 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564
            IW +LL A   +  L+  E VA  LLELEP     Y++L+N+YA   + + V+ +R  +
Sbjct: 361 VIWRTLLVAYTKNRMLQKAEMVAGKLLELEPWKAENYIILANLYASVSQLEKVSHVRKMM 420

Query: 565 NDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVL 624
            + G+K +PGC+SIEV   VH F+ GD  HP+++ I + L ++   +  SG+ P  S VL
Sbjct: 421 KENGIKALPGCTSIEVDGFVHNFVTGDWSHPEAEEIKKTLRDVALKILISGYKPFVSVVL 480

Query: 625 YDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNRE 684
           + +++E KE  L  HSE+LAIAYGL+ TK   TIRIVKNLRVCG+CH  TK+ISKI++RE
Sbjct: 481 HLVNDEEKENVLYEHSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDRE 540

Query: 685 IIARDRNRFHHFKDGNCSCNDYW 707
           II RDR RFH F +G CSC DYW
Sbjct: 541 IIVRDRVRFHKFVNGTCSCKDYW 563



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 117/316 (37%), Positives = 198/316 (62%), Gaps = 6/316 (1%)

Query: 43  MQNIKQVHSQIIK--TGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNN 100
           MQ ++Q+H++I+     + +  F +SK++   A+SPFG+  YA  +F  I  P    +N+
Sbjct: 1   MQILRQIHARILTHVPPISSVSFLISKILSFAALSPFGNFDYARKIFSQIPNPGIFAYNS 60

Query: 101 IIRGHSLSSSPVV-AIKFYVRMILSGFV-PNTYTFPFILKSCAKISAISEGKQIHAHVLK 158
           +IRG   +  P    I  +  M+  G+  PNT+T  F+LK+C+ I A+ EGKQIHA +L+
Sbjct: 61  VIRGCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQILR 120

Query: 159 LGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQL 218
            G  S P+V +SL+N Y++  E+  AR VF++ + R+ V ++A+++GYA  G +++A  +
Sbjct: 121 SGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEALIM 180

Query: 219 FDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMY 278
           F EM +      P+E ++V VLSACA +G+L++G WV + I+   +  +L +  ALI+MY
Sbjct: 181 FREMQVV--GIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMY 238

Query: 279 SKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
           +KCG + KAR++F+ +  +D  +W+ MI G       ++AL +F +M ++  +PN VTF+
Sbjct: 239 AKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFI 298

Query: 339 SVLPACAYLGALDLGK 354
            +L ACA+ G +  GK
Sbjct: 299 GILSACAHGGLVSDGK 314



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 109/249 (43%), Gaps = 16/249 (6%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           + +LS C  +  +   K VH+ I K  +H      + LI + A    G +  A  +F+ +
Sbjct: 197 VGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYA--KCGCIEKAREIFDEM 254

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
           R  +   W+++I G ++      A+  + RM  +   PN  TF  IL +CA    +S+GK
Sbjct: 255 RVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDGK 314

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           +  + +L+LG+E     +  ++++  + G ++ A          D V +  L+  Y    
Sbjct: 315 RYWSSMLELGIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIPTPDPVIWRTLLVAYTKNR 374

Query: 211 YLDDAR----QLFDEMPIREENFV--PNESTVVTVLSACAHMGSLELGNWV-----CSLI 259
            L  A     +L +  P + EN++   N    V+ L   +H+  +   N +     C+ I
Sbjct: 375 MLQKAEMVAGKLLELEPWKAENYIILANLYASVSQLEKVSHVRKMMKENGIKALPGCTSI 434

Query: 260 EGHGLGSNL 268
           E  G   N 
Sbjct: 435 EVDGFVHNF 443


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 253/665 (38%), Positives = 375/665 (56%), Gaps = 32/665 (4%)

Query: 73  AVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPN--T 130
           A S  G LS     FE + + + V WN +I G+SLS     A+K Y  M +  F  N   
Sbjct: 78  AYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTM-MKDFSSNLTR 136

Query: 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK 190
            T   +LK  +    +S GKQIH  V+KLG ES   V + L++MY++ G +  A+ VF  
Sbjct: 137 VTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYG 196

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMP-------------------------IR 225
              R+ V Y  L+ G  + G ++DA QLF  M                           R
Sbjct: 197 LDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFR 256

Query: 226 E---ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
           E   E    ++    +VL AC  +G++  G  + + I    L  +++V +ALIDMY KC 
Sbjct: 257 EMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCK 316

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
            L  A+ +F+ +++++V+SW  M+ GY  T    EA+ +F  M +S I+P+  T    + 
Sbjct: 317 CLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAIS 376

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           ACA + +L+ G   H         ++ +++  SL+ +Y KCG+I  + ++F+ M  +   
Sbjct: 377 ACANISSLEEGSQFHGKA-ITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEV 435

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           SW AM+S  A  G+A +A+ LF +M+  GL+PD +T  GV+SAC+ AGL++ G++YF  M
Sbjct: 436 SWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELM 495

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
           I +Y I P   HY CM+DL  R+G  +EA   +  M  +PDA  WT+LL ACR  G LE+
Sbjct: 496 INEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKGNLEI 555

Query: 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582
           G+  A+ L+EL+P +P  Y LLS++YA  G+WD VA +R  + +K ++K PG S I+   
Sbjct: 556 GKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWIKWKG 615

Query: 583 VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEK 642
            +H F   D+  P S  IY  L+E+   +  +G+ PDTS V +D++E  K   L+ HSE+
Sbjct: 616 KLHSFSADDESSPYSDQIYAKLEELYQKIIDNGYKPDTSFVHHDVEEAVKIKMLNCHSER 675

Query: 643 LAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCS 702
           LAIA+GLI    G  IR+ KNLRVC +CH+ATK IS +  REI+ RD  RFH FKDG CS
Sbjct: 676 LAIAFGLIFVPSGLPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCS 735

Query: 703 CNDYW 707
           C D+W
Sbjct: 736 CGDFW 740



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 216/448 (48%), Gaps = 68/448 (15%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRG-- 104
           KQ+H Q+IK G  +     S L+++   S  G +S A  VF  + + N V++N ++ G  
Sbjct: 156 KQIHGQVIKLGFESYLLVGSPLLDM--YSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLL 213

Query: 105 -----------------HSLSSSPVV-----------AIKFYVRMILSGFVPNTYTFPFI 136
                             S+S S ++           AI+ +  M + G   + Y F  +
Sbjct: 214 ACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSV 273

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L +C  + AI++G+QIHA +++  L+   +V ++LI+MY +   L  A+ VF++   ++ 
Sbjct: 274 LPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNV 333

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           VS+TA++ GY   G   +A ++F +M  +     P+  T+   +SACA++ SLE G+   
Sbjct: 334 VSWTAMVVGYGQTGRAGEAVKIFLDM--QRSGIDPDHYTLGQAISACANISSLEEGSQFH 391

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
                 GL   + V+N+L+ +Y KCGD+  +  LF  +  RD +SW  M+  Y       
Sbjct: 392 GKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAV 451

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           EA+ LF +M+Q  ++P+ VT   V+ AC+  G ++ G+     +   +  + +   ++ +
Sbjct: 452 EAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCM 511

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           ID++++ G I+ A    +GM ++                                  PD 
Sbjct: 512 IDLFSRSGRIEEAMGFINGMPFR----------------------------------PDA 537

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
           I +  +LSAC + G L+IG+    ++I+
Sbjct: 538 IGWTTLLSACRNKGNLEIGKWAAESLIE 565



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/451 (27%), Positives = 202/451 (44%), Gaps = 79/451 (17%)

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYA-------------------- 176
           +K C  + A    K IH ++++     + F+H ++++ YA                    
Sbjct: 10  IKQCIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNL 69

Query: 177 -----------QNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
                      ++G L      F K   RD V++  LI GY+  G +  A + ++ M   
Sbjct: 70  FSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTM--- 126

Query: 226 EENFVPN--ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK--- 280
            ++F  N    T++T+L   +  G + LG  +   +   G  S L V + L+DMYSK   
Sbjct: 127 MKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGC 186

Query: 281 ----------------------------CGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
                                       CG +  A  LF  +EK D +SW+ MI G    
Sbjct: 187 ISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEK-DSVSWSAMIKGLAQN 245

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
              KEA+  FR+M    ++ +   F SVLPAC  LGA++ G+ IHA I + + + +++ +
Sbjct: 246 GMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQ-DHIYV 304

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
            ++LIDMY KC  +  A+ VFD M  K + SW AM+ G    G+A +A+ +F  M   G+
Sbjct: 305 GSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGI 364

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY----GCMVDLLGRAGLF 488
            PD  T    +SAC +   L+ G Q+         I+  L HY      +V L G+ G  
Sbjct: 365 DPDHYTLGQAISACANISSLEEGSQFHGK-----AITAGLIHYITVSNSLVTLYGKCGDI 419

Query: 489 DEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
           D++  L   M ++ D   WT+++ A    GR
Sbjct: 420 DDSTRLFNEMNVR-DEVSWTAMVSAYAQFGR 449



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 172/397 (43%), Gaps = 69/397 (17%)

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML 326
           NL   N L+  YSK G L +    FE +  RD ++WNV+I GY+ +     A+  +  M+
Sbjct: 68  NLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 127

Query: 327 Q---SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383
           +   SN+    VT +++L   +  G + LGK IH  + K   + + + + + L+DMY+K 
Sbjct: 128 KDFSSNL--TRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFE-SYLLVGSPLLDMYSKV 184

Query: 384 GNIKAAEQVFDGMG------YKTL------------------------ASWNAMISGLAM 413
           G I  A++VF G+       Y TL                         SW+AMI GLA 
Sbjct: 185 GCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQ 244

Query: 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQ 473
           +G   +A+  F  M  EGL+ D   F  VL AC   G ++ GRQ  +A I    +   + 
Sbjct: 245 NGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQ-IHACIIRTNLQDHIY 303

Query: 474 HYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL 533
               ++D+  +      A+ +   M+ K +   WT+++      GR   GE+V K  L++
Sbjct: 304 VGSALIDMYCKCKCLHYAKTVFDRMKQK-NVVSWTAMVVGYGQTGR--AGEAV-KIFLDM 359

Query: 534 EPE--NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGD 591
           +    +P  Y L   + A A                        SS+E GS  H    G 
Sbjct: 360 QRSGIDPDHYTLGQAISACA----------------------NISSLEEGSQFH----GK 393

Query: 592 KVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
            +     H   + + +  L  K G + D++ +  +M+
Sbjct: 394 AITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMN 430


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/670 (36%), Positives = 379/670 (56%), Gaps = 12/670 (1%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L++L    + +  + +H  ++K G  +     + L+ + A +  G    A LVF+ +   
Sbjct: 251 LSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGA--GRSVEANLVFKQMPTK 308

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           + + WN+++         + A+     MI SG   N  TF   L +C       +G+ +H
Sbjct: 309 DLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILH 368

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
             V+  GL  +  +  +L++MY + GE+  +R V  +   RD V++ ALI GYA     D
Sbjct: 369 GLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPD 428

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL-ELGNWVCSLIEGHGLGSNLHVTN 272
            A   F  M  R E    N  TVV+VLSAC   G L E G  + + I   G  S+ HV N
Sbjct: 429 KALAAFQTM--RVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKN 486

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           +LI MY+KCGDL  ++DLF  ++ R++I+WN M+    H    +E L L  +M    +  
Sbjct: 487 SLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSL 546

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDK---NHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           +  +F   L A A L  L+ G+ +H    K    H       ++ +  DMY+KCG I   
Sbjct: 547 DQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSF----IFNAAADMYSKCGEIGEV 602

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
            ++      ++L SWN +IS L  HG  ++  + F  M+  G++P  +TFV +L+AC+H 
Sbjct: 603 VKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHG 662

Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
           GL+D G  Y++ + +D+ + P ++H  C++DLLGR+G   EAE  +  M MKP+  +W S
Sbjct: 663 GLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRS 722

Query: 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
           LL +C++HG L+ G   A++L +LEPE+   YVL SNM+A  GRW+DV  +R ++  K +
Sbjct: 723 LLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNI 782

Query: 570 KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE 629
           KK   CS +++   V  F +GD+ HPQ+  IY  L++I  L+++SG+V DTS+ L D DE
Sbjct: 783 KKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDE 842

Query: 630 EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
           E KE  L +HSE+LA+AY L+ST  G+T+RI KNLR+C +CHS  K +S++  R I+ RD
Sbjct: 843 EQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRD 902

Query: 690 RNRFHHFKDG 699
           + RFHHF+ G
Sbjct: 903 QYRFHHFERG 912



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 140/482 (29%), Positives = 236/482 (48%), Gaps = 11/482 (2%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSL 107
           QVH  + K+GL +  +  + ++ +  V  +G +S +  VFE + + N V W +++ G+S 
Sbjct: 63  QVHGFVAKSGLLSDVYVSTAILHLYGV--YGLVSCSRKVFEEMPDRNVVSWTSLMVGYSD 120

Query: 108 SSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFV 167
              P   I  Y  M   G   N  +   ++ SC  +   S G+QI   V+K GLES   V
Sbjct: 121 KGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAV 180

Query: 168 HTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREE 227
             SLI+M    G ++ A  +F++ S RD +S+ ++   YA  G+++++ ++F  M  R  
Sbjct: 181 ENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLM--RRF 238

Query: 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA 287
           +   N +TV T+LS   H+   + G  +  L+   G  S + V N L+ MY+  G  V+A
Sbjct: 239 HDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEA 298

Query: 288 RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347
             +F+ +  +D+ISWN ++  + +     +AL L   M+ S    N VTF S L AC   
Sbjct: 299 NLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTP 358

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
              + G+ +H  +  +    N + +  +L+ MY K G +  + +V   M  + + +WNA+
Sbjct: 359 DFFEKGRILHGLVVVSGLFYNQI-IGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNAL 417

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG-LLDIGRQYFNAMIQDY 466
           I G A     DKAL+ F  M  EG+  + IT V VLSAC   G LL+ G+   +A I   
Sbjct: 418 IGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKP-LHAYIVSA 476

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
                      ++ +  + G    ++ L   ++ + +   W ++L A   HG    GE V
Sbjct: 477 GFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNR-NIITWNAMLAANAHHGH---GEEV 532

Query: 527 AK 528
            K
Sbjct: 533 LK 534



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 117/431 (27%), Positives = 205/431 (47%), Gaps = 26/431 (6%)

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKI-SAISEGKQI 152
           N+V WN ++ G       +  ++F+ +M   G  P+++    ++ +C +  S   EG Q+
Sbjct: 5   NEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQV 64

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H  V K GL SD +V T+++++Y   G +  +R VF +   R+ VS+T+L+ GY+ +G  
Sbjct: 65  HGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEP 124

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           ++   ++  M  R E    NE+++  V+S+C  +    LG  +   +   GL S L V N
Sbjct: 125 EEVIDIYKGM--RGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVEN 182

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           +LI M    G++  A  +F+ + +RD ISWN +   Y      +E+  +F  M + + E 
Sbjct: 183 SLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEV 242

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N  T  ++L    ++     G+ IH  + K     + V +  +L+ MYA  G    A  V
Sbjct: 243 NSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFD-SVVCVCNTLLRMYAGAGRSVEANLV 301

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           F  M  K L SWN++++     G++  AL L   MI  G   + +TF   L+AC      
Sbjct: 302 FKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFF 361

Query: 453 DIGR----------QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
           + GR           ++N +I +            +V + G+ G   E+  +L  M  + 
Sbjct: 362 EKGRILHGLVVVSGLFYNQIIGN-----------ALVSMYGKIGEMSESRRVLLQMP-RR 409

Query: 503 DAAIWTSLLGA 513
           D   W +L+G 
Sbjct: 410 DVVAWNALIGG 420



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 113/226 (50%), Gaps = 4/226 (1%)

Query: 297 RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL-DLGKW 355
           R+ +SWN M+ G      Y E +  FR+M    I+P+     S++ AC   G++   G  
Sbjct: 4   RNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQ 63

Query: 356 IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHG 415
           +H ++ K+   L++V + T+++ +Y   G +  + +VF+ M  + + SW +++ G +  G
Sbjct: 64  VHGFVAKSGL-LSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKG 122

Query: 416 KADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY 475
           + ++ + ++  M GEG+  ++ +   V+S+C       +GRQ    +++   +  KL   
Sbjct: 123 EPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKS-GLESKLAVE 181

Query: 476 GCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
             ++ +LG  G  D A  +   M  + D   W S+  A   +G +E
Sbjct: 182 NSLISMLGSMGNVDYANYIFDQMSER-DTISWNSIAAAYAQNGHIE 226



 Score = 40.4 bits (93), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 17/124 (13%)

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG-LLDI 454
           M  +   SWN M+SG+   G   + +  F +M   G++P       +++AC  +G +   
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFRE 60

Query: 455 GRQYF-----NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI--W 507
           G Q       + ++ D  +S  + H      L G  GL   +  + + M   PD  +  W
Sbjct: 61  GVQVHGFVAKSGLLSDVYVSTAILH------LYGVYGLVSCSRKVFEEM---PDRNVVSW 111

Query: 508 TSLL 511
           TSL+
Sbjct: 112 TSLM 115


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/546 (42%), Positives = 339/546 (62%), Gaps = 16/546 (2%)

Query: 162 ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDE 221
           E D F    ++  Y +N +L++AR +F +   RD VS+ A+++GYA  G++D+AR++F +
Sbjct: 23  ERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYK 82

Query: 222 MPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC 281
           MP++      N  +   +L+A    G +E       L E   +   L   N L+      
Sbjct: 83  MPLK------NGISWNGLLAAYVQNGRIEDAK---RLFESK-MDWTLVSWNCLMG----- 127

Query: 282 GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
           G + K R+LF+++ +RD ISW+ MI GY+     +EAL  F +M +     N  +F   L
Sbjct: 128 GFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCAL 187

Query: 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401
             C+ + AL+LG+ +H  + K   +     +  +L+ MY KCG+I  A   F  +  K +
Sbjct: 188 STCSNIAALELGRQLHCRLVKAGYQ-TGWYVGNALLAMYCKCGSIDEARDAFQEILEKDV 246

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
            SWN MI G A HG  ++AL++F  M   G++PDD T V VL+AC+HAGL+D G +YF +
Sbjct: 247 VSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYS 306

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
           M +DY I+ KL HY CMVDLLGRAG  +EA+ L+K M  +PDAA W +LLGA R+HG  E
Sbjct: 307 MNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTE 366

Query: 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
           LGE  A+ + E+EP N G Y+LLS +YA +GRW D   +R  + +KG+KKVPG S +EV 
Sbjct: 367 LGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQ 426

Query: 582 SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
           + +H F VGD  HP +  IY  L+E+D  L++ G++  T+ V +D++EE K   L +HSE
Sbjct: 427 NKIHTFKVGDTSHPHTDKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEEEKVHMLKYHSE 486

Query: 642 KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
           KLA+AYG++    G  IR++KNLRVC +CH+A K ISKI  R II RD +RFH+F+ G+C
Sbjct: 487 KLAVAYGILYIPAGRPIRVIKNLRVCEDCHNAIKYISKIVGRLIILRDNHRFHYFEGGSC 546

Query: 702 SCNDYW 707
           SC D+W
Sbjct: 547 SCRDFW 552



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 176/342 (51%), Gaps = 18/342 (5%)

Query: 79  DLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILK 138
           DL  A  +FE + E + V WN ++ G++ +     A + + +M L     N  ++  +L 
Sbjct: 41  DLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYKMPL----KNGISWNGLLA 96

Query: 139 SCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVS 198
           +  +   I + K++    +   L S   +           G +   R +F+    RD++S
Sbjct: 97  AYVQNGRIEDAKRLFESKMDWTLVSWNCL---------MGGFVRKRRNLFDNMPQRDSIS 147

Query: 199 YTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV-CS 257
           ++A+I GY+  G  ++A   F EM    E    N S+    LS C+++ +LELG  + C 
Sbjct: 148 WSAMIAGYSQNGCSEEALHFFVEMQRDCERL--NRSSFTCALSTCSNIAALELGRQLHCR 205

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
           L++  G  +  +V NAL+ MY KCG + +ARD F+ I ++DV+SWN MI GY      +E
Sbjct: 206 LVKA-GYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEE 264

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           AL +F  M  + I P+D T +SVL AC++ G +D G      +++++     +  +T ++
Sbjct: 265 ALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMV 324

Query: 378 DMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKAD 418
           D+  + G ++ A+ +   M ++   A+W A++    +HG  +
Sbjct: 325 DLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTE 366



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 127/296 (42%), Gaps = 68/296 (22%)

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           ARDLF+ + +RD+ SWNVM+ GY    D K A  LF +M + +I    V++ ++L   A 
Sbjct: 14  ARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDI----VSWNAMLSGYAQ 69

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN- 405
            G +D  + I   +      L N   W  L+  Y + G I+ A+++F+     TL SWN 
Sbjct: 70  NGFVDEAREIFYKM-----PLKNGISWNGLLAAYVQNGRIEDAKRLFESKMDWTLVSWNC 124

Query: 406 -------------------------AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFV 440
                                    AMI+G + +G +++AL  F  M  +  + +  +F 
Sbjct: 125 LMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFT 184

Query: 441 GVLSACNHAGLLDIGRQYF---------------NAMIQDY---------------KISP 470
             LS C++   L++GRQ                 NA++  Y                +  
Sbjct: 185 CALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEK 244

Query: 471 KLQHYGCMVDLLGRAGLFDEAEA---LLKTMEMKPDAAIWTSLLGACRVHGRLELG 523
            +  +  M+    R G  +EA     L+KT  ++PD A   S+L AC   G ++ G
Sbjct: 245 DVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQG 300


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/534 (40%), Positives = 339/534 (63%), Gaps = 4/534 (0%)

Query: 174 MYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
           MY + G +  AR VF+K   RD VS+T LI GYA      +A  L  +M      F PN 
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDM--LRARFRPNG 58

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
            T  ++L A    G   +G  + +L   +    +++V +AL+DMY++C  +  A  +F+ 
Sbjct: 59  FTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDR 118

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
           +  ++ +SWN +I G+   +D +  LM F +M ++       T+ S+  A A +GAL+ G
Sbjct: 119 LVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQG 178

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAM 413
           +W+HA++ K+ QKL    +  +++ MYAK G++  A +VFD M  + L +WN M++ LA 
Sbjct: 179 RWVHAHLIKSGQKLTAF-VGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQ 237

Query: 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQ 473
           +G   +A++ F  +   G+Q + ITF+ VL+AC+H GL+  G+ YF+ M++DY + P++ 
Sbjct: 238 YGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFD-MMKDYNVQPEID 296

Query: 474 HYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL 533
           HY   VDLLGRAGL  EA   +  M M+P AA+W +LLGACR+H   ++G+  A H+ EL
Sbjct: 297 HYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFEL 356

Query: 534 EPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKV 593
           +P++ G  VLL N+YA  G+W+D A +R  +   G+KK P CS +++ + VH F+  D  
Sbjct: 357 DPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDT 416

Query: 594 HPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTK 653
           HP+S  IY M +EI+  ++K+G+VP+T+ VL  ++E+ +E  L +HSEK+A+A+ LI+  
Sbjct: 417 HPKSGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMP 476

Query: 654 PGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            G +IRI+KN+R+CG+CHSA K +SK+F REI+ RD NRFHHF +G+CSC DYW
Sbjct: 477 AGASIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 530



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 180/343 (52%), Gaps = 8/343 (2%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G +S A  VF+ +   + V W  +I G++ +  P  AI     M+ + F PN +TF  +L
Sbjct: 6   GAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLL 65

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
           K+       S G+Q+HA  +K   + D +V ++L++MYA+  +++ A +VF++   ++ V
Sbjct: 66  KATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEV 125

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           S+ ALI G+A +   +     F EM  +   F     T  ++ SA A +G+LE G WV +
Sbjct: 126 SWNALIAGFARKADGETTLMKFAEM--QRNGFGATHFTYSSMFSAFARIGALEQGRWVHA 183

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
            +   G      V N ++ MY+K G +V AR +F+ ++KRD+++WN M+         KE
Sbjct: 184 HLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKE 243

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID--KNHQKLNNVSLWTS 375
           A+  F ++ +  I+ N +TFLSVL AC++ G +  GK    Y D  K++     +  + S
Sbjct: 244 AVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGK---HYFDMMKDYNVQPEIDHYVS 300

Query: 376 LIDMYAKCGNIKAAEQ-VFDGMGYKTLASWNAMISGLAMHGKA 417
            +D+  + G +K A   VF      T A W A++    MH  A
Sbjct: 301 FVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNA 343



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 144/287 (50%), Gaps = 12/287 (4%)

Query: 3   LPPSSLTLSPSILH--FPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHN 60
           +P  ++ L P +L   F P+      LL+   +      C      +Q+H+  +K     
Sbjct: 38  MPAEAIGLLPDMLRARFRPNGFTFTSLLKATGA------CGGCSIGEQMHALAVKYNWDE 91

Query: 61  TQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVR 120
             +  S L+++ A     D+  A++VF+ +   N+V WN +I G +  +     +  +  
Sbjct: 92  DVYVGSALLDMYARCEQMDM--AIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAE 149

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           M  +GF    +T+  +  + A+I A+ +G+ +HAH++K G +   FV  +++ MYA++G 
Sbjct: 150 MQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGS 209

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
           +  AR VF++   RD V++  ++T  A  G   +A   F+E  IR+     N+ T ++VL
Sbjct: 210 MVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEE--IRKCGIQLNQITFLSVL 267

Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA 287
           +AC+H G ++ G     +++ + +   +    + +D+  + G L +A
Sbjct: 268 TACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEA 314


>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 591

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/567 (41%), Positives = 357/567 (62%), Gaps = 12/567 (2%)

Query: 150 KQIHAHVLKLGL--ESDPFVHT-SLINMYAQNGELESARLVFNKSSLRDAVSY-TALITG 205
           +QIHA +L+  L   SD F H  S + +     ++  +  VF++  L   +S+   +I  
Sbjct: 28  RQIHAVLLRTSLIRNSDVFHHFFSRLALSLIPRDINYSCRVFSQR-LNPTLSHCNTMIRA 86

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           ++      +  +LF  +  R  +F  N  +    L  C   G L  G  +   I   G  
Sbjct: 87  FSLSQTPCEGFRLFRALR-RNISFPANPLSSSFALKCCIKSGDLLGGLQIHGKIFSDGFL 145

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
           S+  +   L+D+YS C +   A  +F+ I +RD +SWNV+I  Y      ++ L+LF +M
Sbjct: 146 SDSLLMTTLMDLYSTCENSTDACKVFDEIPQRDTVSWNVLISCYLRNKRTRDVLVLFDKM 205

Query: 326 ---LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
              +   ++P++VT L  L ACA LGALD GK +H +ID+N      ++L  +L+ MY++
Sbjct: 206 KNDVDRCVKPDNVTCLLALQACANLGALDFGKQVHDFIDENGLS-GALNLSNTLVSMYSR 264

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
           CG++  A +VF+ M  + + SW AMISGLAM+G   +A+  F+ M+  G+ P++ T  G+
Sbjct: 265 CGSMDKAYEVFNRMRERNVVSWTAMISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGL 324

Query: 443 LSACNHAGLLDIGRQYFNAMIQ-DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK 501
           LSAC+H+GL+D G  +F+ M   ++KI P L HYGC+VDLLGRA L D+A +L+K+MEMK
Sbjct: 325 LSACSHSGLVDEGMMFFDRMRSGEFKIKPNLHHYGCIVDLLGRARLLDKAYSLIKSMEMK 384

Query: 502 PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIR 561
           PD+ IW +LLGACRVHG +ELGE V  HL+E + E  G YVLL N Y+  G+W+ V  +R
Sbjct: 385 PDSTIWRTLLGACRVHGNVELGERVIAHLIEFKAEEAGDYVLLLNTYSSVGKWEKVTELR 444

Query: 562 TRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTS 621
           + +  K ++  PGCS+IE+   VHEF+V D  HP+ + IY+ML EI+  L+ +G+V + +
Sbjct: 445 SLMKKKRIQTNPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGYVAEIT 504

Query: 622 EVLYDMDEEWKEG-ALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKI 680
             L+++D E ++G AL +HSEKLAIA+G++ T P TTIR+ KNLR C +CH+  K +S +
Sbjct: 505 SELHNLDSEEEKGYALRYHSEKLAIAFGILVTPPETTIRVTKNLRTCVDCHNFAKFVSDV 564

Query: 681 FNREIIARDRNRFHHFKDGNCSCNDYW 707
           ++R +I RDR+RFHHFK G+CSCND+W
Sbjct: 565 YDRVVIVRDRSRFHHFKGGSCSCNDFW 591



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 110/394 (27%), Positives = 190/394 (48%), Gaps = 7/394 (1%)

Query: 41  TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF-GDLSYALLVFETIREPNQVIWN 99
           T   +++Q+H+ +++T L              A+S    D++Y+  VF     P     N
Sbjct: 22  TGKLHLRQIHAVLLRTSLIRNSDVFHHFFSRLALSLIPRDINYSCRVFSQRLNPTLSHCN 81

Query: 100 NIIRGHSLSSSPVVAIKFY--VRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
            +IR  SLS +P    + +  +R  +S F  N  +  F LK C K   +  G QIH  + 
Sbjct: 82  TMIRAFSLSQTPCEGFRLFRALRRNIS-FPANPLSSSFALKCCIKSGDLLGGLQIHGKIF 140

Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ 217
             G  SD  + T+L+++Y+       A  VF++   RD VS+  LI+ Y       D   
Sbjct: 141 SDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPQRDTVSWNVLISCYLRNKRTRDVLV 200

Query: 218 LFDEMPIREENFV-PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALID 276
           LFD+M    +  V P+  T +  L ACA++G+L+ G  V   I+ +GL   L+++N L+ 
Sbjct: 201 LFDKMKNDVDRCVKPDNVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVS 260

Query: 277 MYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVT 336
           MYS+CG + KA ++F  + +R+V+SW  MI G       KEA+  F +ML+  I P + T
Sbjct: 261 MYSRCGSMDKAYEVFNRMRERNVVSWTAMISGLAMNGFGKEAIEAFNEMLKFGISPEEQT 320

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLN-NVSLWTSLIDMYAKCGNIKAAEQVFDG 395
              +L AC++ G +D G      +     K+  N+  +  ++D+  +   +  A  +   
Sbjct: 321 LTGLLSACSHSGLVDEGMMFFDRMRSGEFKIKPNLHHYGCIVDLLGRARLLDKAYSLIKS 380

Query: 396 MGYKTLAS-WNAMISGLAMHGKADKALSLFSRMI 428
           M  K  ++ W  ++    +HG  +    + + +I
Sbjct: 381 MEMKPDSTIWRTLLGACRVHGNVELGERVIAHLI 414


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/598 (38%), Positives = 351/598 (58%), Gaps = 25/598 (4%)

Query: 132 TFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKS 191
           T+  +L+ CA + +I +G++IH+ +    +E D  + + L+ MY   G+L   R +F+K 
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162

Query: 192 SLRDAVSYTALITGYASRG------------------YLDDARQLFDEMPIREENFVPNE 233
           +      +  L+ GYA  G                   ++ AR+LFDE+  R+   +   
Sbjct: 163 ANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRD--VISWN 220

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGS----NLHVTNALIDMYSKCGDLVKARD 289
           S +   +S       L+L   +  L     L +     L + N L+DMYSK G+L  A  
Sbjct: 221 SMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQ 280

Query: 290 LFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA 349
           +FE++ +R V+SW  MI GY        ++ LF +M + ++ PN +T   +LPACA L A
Sbjct: 281 VFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAA 340

Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
           L+ G+ IH +I +N   L+   +  +L+DMY KCG +  A  +FD +  K L SW  MI+
Sbjct: 341 LERGQEIHGHILRNGFSLDR-HVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIA 399

Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS 469
           G  MHG   +A++ F+ M   G++PD+++F+ +L AC+H+GLLD G  +FN M  +  I 
Sbjct: 400 GYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIE 459

Query: 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKH 529
           PK +HY C+VDLL RAG   +A   +K M ++PDA IW +LL  CR++  ++L E VA+H
Sbjct: 460 PKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEH 519

Query: 530 LLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLV 589
           + ELEPEN G YVLL+N+YA A +W++V  +R R+  +G++K PGCS IE+   VH F+ 
Sbjct: 520 VFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVT 579

Query: 590 GDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGL 649
           GD  HP +  I  +L +    +++ G  P     L   D+  KE AL  HSEK+A+A+G+
Sbjct: 580 GDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAFGI 639

Query: 650 ISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +S  PG T+R+ KNLRVCG+CH   K +SK+  R+II RD NRFHHFKDG+CSC  +W
Sbjct: 640 LSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 697



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 201/432 (46%), Gaps = 55/432 (12%)

Query: 20  SSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGD 79
           S  P  +L      L L +   ++Q+ +++HS I    +       SKL+ +      GD
Sbjct: 94  SPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTC--GD 151

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRM------------------ 121
           L     +F+ +      +WN ++ G++   +   ++  + RM                  
Sbjct: 152 LREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDEL 211

Query: 122 ----------ILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTS- 170
                     ++SG+V N  +               +G  +   +L LG+ +D     S 
Sbjct: 212 GDRDVISWNSMISGYVSNGLS--------------EKGLDLFEQMLLLGINTDLATMVSV 257

Query: 171 -------LINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
                  L++MY+++G L SA  VF     R  VS+T++I GYA  G  D + +LF EM 
Sbjct: 258 ELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEM- 316

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
             +E+  PN  T+  +L ACA + +LE G  +   I  +G   + HV NAL+DMY KCG 
Sbjct: 317 -EKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGA 375

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           L  AR LF+ I ++D++SW VMI GY       EA+  F +M  S IEP++V+F+S+L A
Sbjct: 376 LGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYA 435

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
           C++ G LD G      +  N         +  ++D+ A+ GN+  A +    M  +  A+
Sbjct: 436 CSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDAT 495

Query: 404 -WNAMISGLAMH 414
            W A++ G  ++
Sbjct: 496 IWGALLCGCRIY 507



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 140/269 (52%), Gaps = 6/269 (2%)

Query: 75  SPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFP 134
           S  G+L+ A+ VFET+ E + V W ++I G++      ++++ +  M      PN+ T  
Sbjct: 270 SKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMA 329

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
            IL +CA ++A+  G++IH H+L+ G   D  V  +L++MY + G L  ARL+F+    +
Sbjct: 330 CILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEK 389

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
           D VS+T +I GY   GY  +A   F+EM  R     P+E + +++L AC+H G L+ G  
Sbjct: 390 DLVSWTVMIAGYGMHGYGSEAIAAFNEM--RNSGIEPDEVSFISILYACSHSGLLDEGWG 447

Query: 255 VCSLIEGH-GLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHT 312
             +++  +  +         ++D+ ++ G+L KA    + +  + D   W  ++ G    
Sbjct: 448 FFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIY 507

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
            D K A  +   + +  +EP +  +  +L
Sbjct: 508 HDVKLAEKVAEHVFE--LEPENTGYYVLL 534


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/368 (57%), Positives = 275/368 (74%), Gaps = 1/368 (0%)

Query: 340 VLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK 399
           +L ACA + AL+ GK +HA I K   +L+ VS+   L+DMY KCG I+ A++VF  +   
Sbjct: 4   ILRACASVAALEQGKQVHADIIKIGFELD-VSVSNGLVDMYGKCGRIEDAQEVFSKLLEP 62

Query: 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF 459
            +ASWNAMISGLA HG   +A+ LF +M+  G++P+ ITFV VLS C+HAGL+D GR YF
Sbjct: 63  DVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYF 122

Query: 460 NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
           ++M +D+ ISPK +HY CMVDL GRAG  DEA   +  M ++P+A++W SLLGACRVHG 
Sbjct: 123 DSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGN 182

Query: 520 LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIE 579
           +EL E   + L+EL PENPG YVLLSN+YA AGRWDD   +R  + D+ +KK PGCS IE
Sbjct: 183 IELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIE 242

Query: 580 VGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHH 639
           V + VH F+VGD  HPQ + IYE L+ +   ++ +G++P+T+ VL+D++EE KE  L HH
Sbjct: 243 VQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILGHH 302

Query: 640 SEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDG 699
           SEKLAIA+G+IST PGTTIR+VKNLRVCG+CH+ATK IS+I +REI+ RD +RFHHFKDG
Sbjct: 303 SEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFKDG 362

Query: 700 NCSCNDYW 707
            CSC DYW
Sbjct: 363 QCSCGDYW 370



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 105/191 (54%), Gaps = 1/191 (0%)

Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD 298
           +L ACA + +LE G  V + I   G   ++ V+N L+DMY KCG +  A+++F  + + D
Sbjct: 4   ILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPD 63

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
           V SWN MI G       KEA++LF QMLQ+ ++PN +TF+ VL  C++ G +D G+    
Sbjct: 64  VASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFD 123

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHGKA 417
            + ++H        ++ ++D++ + G +  A    + M  +  AS W +++    +HG  
Sbjct: 124 SMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNI 183

Query: 418 DKALSLFSRMI 428
           + A     ++I
Sbjct: 184 ELAERAVEQLI 194



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 115/223 (51%), Gaps = 12/223 (5%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           IL++CA ++A+ +GKQ+HA ++K+G E D  V   L++MY + G +E A+ VF+K    D
Sbjct: 4   ILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPD 63

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NW 254
             S+ A+I+G A  G   +A  LF++M   +    PN+ T V VLS C+H G ++ G N+
Sbjct: 64  VASWNAMISGLAQHGCGKEAVLLFEQM--LQTGVKPNQITFVVVLSGCSHAGLVDEGRNY 121

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVIS-WNVMIGGYTHTS 313
             S+   HG+       + ++D++ + G L +A +    +      S W  ++G      
Sbjct: 122 FDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHG 181

Query: 314 DYKEALMLFRQMLQSNIE-PNDVTFLSVLPACAYLGALDLGKW 355
           + + A     Q+++   E P     LS + A A       G+W
Sbjct: 182 NIELAERAVEQLIELTPENPGTYVLLSNIYAAA-------GRW 217



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 111/279 (39%), Gaps = 52/279 (18%)

Query: 35  ALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
            +L  C +   ++  KQVH+ IIK G        + L+++      G +  A  VF  + 
Sbjct: 3   GILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDM--YGKCGRIEDAQEVFSKLL 60

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           EP+   WN +I G +       A+  + +M+ +G  PN  TF  +L  C+    + EG+ 
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
                       D       I+  A++                    Y+ ++  +   G 
Sbjct: 121 YF----------DSMTRDHGISPKAEH--------------------YSCMVDLFGRAGC 150

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW-VCSLIE-------GHG 263
           LD+A    ++MP+      PN S   ++L AC   G++EL    V  LIE        + 
Sbjct: 151 LDEALNFINQMPVE-----PNASVWGSLLGACRVHGNIELAERAVEQLIELTPENPGTYV 205

Query: 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
           L SN++      D   K   ++K R    S++K    SW
Sbjct: 206 LLSNIYAAAGRWDDAGKVRKMMKDR----SVKKEPGCSW 240


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 248/667 (37%), Positives = 375/667 (56%), Gaps = 32/667 (4%)

Query: 71  ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPN- 129
           + A S  G +S     FE + + + V WN +I G+SLS     A+K Y  M +  F  N 
Sbjct: 79  LLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTM-MRDFSANL 137

Query: 130 -TYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF 188
              T   +LK  +    +S GKQIH  V+KLG ES   V + L+ MYA  G +  A+ VF
Sbjct: 138 TRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVF 197

Query: 189 NKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP------------------------- 223
                R+ V Y +L+ G  + G ++DA QLF  M                          
Sbjct: 198 YGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIEC 257

Query: 224 ---IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK 280
              ++ +    ++    +VL AC  +G++  G  + + I       +++V +ALIDMY K
Sbjct: 258 FREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCK 317

Query: 281 CGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSV 340
           C  L  A+ +F+ +++++V+SW  M+ GY  T   +EA+ +F  M +S I+P+  T    
Sbjct: 318 CKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQA 377

Query: 341 LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT 400
           + ACA + +L+ G   H     +   ++ V++  SL+ +Y KCG+I  + ++F+ M  + 
Sbjct: 378 ISACANVSSLEEGSQFHGKAITSGL-IHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRD 436

Query: 401 LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFN 460
             SW AM+S  A  G+A + + LF +M+  GL+PD +T  GV+SAC+ AGL++ G++YF 
Sbjct: 437 AVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFK 496

Query: 461 AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRL 520
            M  +Y I P + HY CM+DL  R+G  +EA   +  M   PDA  WT+LL ACR  G L
Sbjct: 497 LMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNL 556

Query: 521 ELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEV 580
           E+G+  A+ L+EL+P +P  Y LLS++YA  G+WD VA +R  + +K +KK PG S I+ 
Sbjct: 557 EIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKW 616

Query: 581 GSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHS 640
              +H F   D+  P    IY  L+E++  +  +G+ PDTS V +D++E  K   L++HS
Sbjct: 617 KGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHS 676

Query: 641 EKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGN 700
           E+LAIA+GLI    G  IR+ KNLRVC +CH+ATK IS +  REI+ RD  RFH FKDG 
Sbjct: 677 ERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGT 736

Query: 701 CSCNDYW 707
           CSC D+W
Sbjct: 737 CSCGDFW 743



 Score =  179 bits (453), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 123/485 (25%), Positives = 227/485 (46%), Gaps = 70/485 (14%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRG-- 104
           KQ+H Q+IK G  +     S L+ + A    G +S A  VF  + + N V++N+++ G  
Sbjct: 159 KQIHGQVIKLGFESYLLVGSPLLYMYA--NVGCISDAKKVFYGLDDRNTVMYNSLMGGLL 216

Query: 105 -----------------HSLSSSPVV-----------AIKFYVRMILSGFVPNTYTFPFI 136
                             S+S + ++           AI+ +  M + G   + Y F  +
Sbjct: 217 ACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSV 276

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L +C  + AI+EGKQIHA +++   +   +V ++LI+MY +   L  A+ VF++   ++ 
Sbjct: 277 LPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNV 336

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           VS+TA++ GY   G  ++A ++F +M  +     P+  T+   +SACA++ SLE G+   
Sbjct: 337 VSWTAMVVGYGQTGRAEEAVKIFLDM--QRSGIDPDHYTLGQAISACANVSSLEEGSQFH 394

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
                 GL   + V+N+L+ +Y KCGD+  +  LF  +  RD +SW  M+  Y       
Sbjct: 395 GKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAV 454

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           E + LF +M+Q  ++P+ VT   V+ AC+  G ++ G+     +   +  + ++  ++ +
Sbjct: 455 ETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCM 514

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           ID++++ G ++ A +  +GM +                                   PD 
Sbjct: 515 IDLFSRSGRLEEAMRFINGMPFP----------------------------------PDA 540

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
           I +  +LSAC + G L+IG+    ++I+     P    Y  +  +    G +D    L +
Sbjct: 541 IGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPA--GYTLLSSIYASKGKWDSVAQLRR 598

Query: 497 TMEMK 501
            M  K
Sbjct: 599 GMREK 603



 Score =  159 bits (402), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 122/458 (26%), Positives = 219/458 (47%), Gaps = 55/458 (12%)

Query: 118 YVRMILSGFV-----PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLI 172
           YV+MI    +     P T+ +  I+ + A + + +  +++   + +  L    F   +L+
Sbjct: 24  YVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNL----FSWNNLL 79

Query: 173 NMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPN 232
             Y++ G +      F K   RD V++  LI GY+  G +  A + ++ M +R+ +    
Sbjct: 80  LAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTM-MRDFSANLT 138

Query: 233 ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFE 292
             T++T+L   +  G + LG  +   +   G  S L V + L+ MY+  G +  A+ +F 
Sbjct: 139 RVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFY 198

Query: 293 SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI---------------------- 330
            ++ R+ + +N ++GG       ++AL LFR M + ++                      
Sbjct: 199 GLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECF 258

Query: 331 --------EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
                   + +   F SVLPAC  LGA++ GK IHA I + + + +++ + ++LIDMY K
Sbjct: 259 REMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQ-DHIYVGSALIDMYCK 317

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
           C  +  A+ VFD M  K + SW AM+ G    G+A++A+ +F  M   G+ PD  T    
Sbjct: 318 CKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQA 377

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY----GCMVDLLGRAGLFDEAEALLKTM 498
           +SAC +   L+ G Q+         I+  L HY      +V L G+ G  D++  L   M
Sbjct: 378 ISACANVSSLEEGSQFHGK-----AITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEM 432

Query: 499 EMKPDAAIWTSLLGACRVHGR----LELGESVAKHLLE 532
            ++ DA  WT+++ A    GR    ++L + + +H L+
Sbjct: 433 NVR-DAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLK 469



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 180/382 (47%), Gaps = 52/382 (13%)

Query: 28  LQNQPSLALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEI-CAVSPFGDLSYA 83
           +   P  ++L  C  +  I   KQ+H+ II+T   +  +  S LI++ C       L YA
Sbjct: 268 MDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKC---LHYA 324

Query: 84  LLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKI 143
             VF+ +++ N V W  ++ G+  +     A+K ++ M  SG  P+ YT    + +CA +
Sbjct: 325 KTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANV 384

Query: 144 SAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALI 203
           S++ EG Q H   +  GL     V  SL+ +Y + G+++ +  +FN+ ++RDAVS+TA++
Sbjct: 385 SSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMV 444

Query: 204 TGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG-H 262
           + YA  G   +  QLFD+M   +    P+  T+  V+SAC+  G +E G     L+   +
Sbjct: 445 SAYAQFGRAVETIQLFDKMV--QHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEY 502

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
           G+  ++   + +ID++S+ G L                               +EA+   
Sbjct: 503 GIVPSIGHYSCMIDLFSRSGRL-------------------------------EEAMRFI 531

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY---IDKNHQKLNNVSLWTSLIDM 379
             M      P+ + + ++L AC   G L++GKW       +D +H      + +T L  +
Sbjct: 532 NGM---PFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHP-----AGYTLLSSI 583

Query: 380 YAKCGNIKAAEQVFDGMGYKTL 401
           YA  G   +  Q+  GM  K +
Sbjct: 584 YASKGKWDSVAQLRRGMREKNV 605



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 95/395 (24%), Positives = 163/395 (41%), Gaps = 65/395 (16%)

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML 326
           NL   N L+  YSK G + +    FE +  RD ++WNV+I GY+ +     A+  +  M+
Sbjct: 71  NLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 130

Query: 327 QS-NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK----------------------- 362
           +  +     VT +++L   +  G + LGK IH  + K                       
Sbjct: 131 RDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCI 190

Query: 363 -NHQKL------NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHG 415
            + +K+       N  ++ SL+     CG I+ A Q+F GM  K   SW AMI GLA +G
Sbjct: 191 SDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNG 249

Query: 416 KADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY 475
            A +A+  F  M  +GL+ D   F  VL AC   G ++ G+Q  +A I        +   
Sbjct: 250 LAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQ-IHACIIRTNFQDHIYVG 308

Query: 476 GCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEP 535
             ++D+  +      A+ +   M+ K +   WT+++     +G+    E   K  L+++ 
Sbjct: 309 SALIDMYCKCKCLHYAKTVFDRMKQK-NVVSWTAMVVG---YGQTGRAEEAVKIFLDMQR 364

Query: 536 E--NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKV 593
              +P  Y L                       + +      SS+E GS  H    G  +
Sbjct: 365 SGIDPDHYTL----------------------GQAISACANVSSLEEGSQFH----GKAI 398

Query: 594 HPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
                H   + + +  L  K G + D++ +  +M+
Sbjct: 399 TSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMN 433


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/603 (38%), Positives = 362/603 (60%), Gaps = 17/603 (2%)

Query: 115 IKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINM 174
           +K  +R++     P+  T+  ++  C   S++S+  ++H H+L  G + DPF+ T LI M
Sbjct: 62  LKQAIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGM 121

Query: 175 YAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNES 234
           Y+  G ++ AR VF+K+  R    + AL       G+ ++   L+ +M     N +  ES
Sbjct: 122 YSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKM-----NRIGVES 176

Query: 235 ---TVVTVLSACA----HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA 287
              T   VL AC      +  L  G  + + +   G  S++++   L+DMY++ G +  A
Sbjct: 177 DRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYA 236

Query: 288 RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE--PNDVTFLSVLPACA 345
             +F  +  R+V+SW+ MI  Y       EAL  FR+M++   +  PN VT +SVL ACA
Sbjct: 237 SYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACA 296

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNV-SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
            L AL+ GK IH YI +  + L+++  + ++L+ MY +CG ++  ++VFD M  + + SW
Sbjct: 297 SLAALEQGKLIHGYILR--RGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSW 354

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
           N++IS   +HG   KA+ +F  M+  G  P  +TFV VL AC+H GL++ G++ F  M +
Sbjct: 355 NSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWR 414

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGE 524
           D+ I P+++HY CMVDLLGRA   DEA  +++ M  +P   +W SLLG+CR+HG +EL E
Sbjct: 415 DHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAE 474

Query: 525 SVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVV 584
             ++ L  LEP+N G YVLL+++YA A  WD+V  ++  L  +G++K+PG   +EV   +
Sbjct: 475 RASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKM 534

Query: 585 HEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLA 644
           + F+  D+ +P  + I+  L ++   +++ G++P T  VLY+++ E KE  +  HSEKLA
Sbjct: 535 YSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLA 594

Query: 645 IAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCN 704
           +A+GLI+T  G  IRI KNLR+C +CH  TK ISK   +EI+ RD NRFH FK+G CSC 
Sbjct: 595 LAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCG 654

Query: 705 DYW 707
           DYW
Sbjct: 655 DYW 657



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 137/466 (29%), Positives = 237/466 (50%), Gaps = 27/466 (5%)

Query: 30  NQPSLALLSKC----TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALL 85
           +Q +  LL  C    +++ +  +VH  I+  G     F  +KLI +   S  G + YA  
Sbjct: 76  SQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGM--YSDLGSVDYARK 133

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCA---- 141
           VF+  R+    +WN + R  +L+      +  Y +M   G   + +T+ ++LK+C     
Sbjct: 134 VFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASEC 193

Query: 142 KISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTA 201
            ++ + +GK+IHAH+ + G  S  ++ T+L++MYA+ G ++ A  VF    +R+ VS++A
Sbjct: 194 TVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSA 253

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
           +I  YA  G   +A + F EM    ++  PN  T+V+VL ACA + +LE G  +   I  
Sbjct: 254 MIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILR 313

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALML 321
            GL S L V +AL+ MY +CG L   + +F+ +  RDV+SWN +I  Y      K+A+ +
Sbjct: 314 RGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQI 373

Query: 322 FRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381
           F +ML +   P  VTF+SVL AC++ G ++ GK +   + ++H     +  +  ++D+  
Sbjct: 374 FEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLG 433

Query: 382 KCGNI-KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFV 440
           +   + +AA+ V D         W +++    +HG  + A     R+    L+P +    
Sbjct: 434 RANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLF--ALEPKN---- 487

Query: 441 GVLSACNHAGLLDIGRQYFNAMIQD--YKISPKLQHYGCMVDLLGR 484
               A N+  L DI   Y  A + D   ++   L+H G +  L GR
Sbjct: 488 ----AGNYVLLADI---YAEAQMWDEVKRVKKLLEHRG-LQKLPGR 525


>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
 gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
          Length = 706

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 242/662 (36%), Positives = 374/662 (56%), Gaps = 10/662 (1%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +++H  I + GL +  +  + L+ +      G L  A LVFE     N   W  +I   +
Sbjct: 54  RRIHQLIRRVGLGSDVYVSNHLVMM--YGKCGSLEEARLVFEATPAKNVFSWTILITVCA 111

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSC-AKISAISEGKQIHAHVLKLGLESDP 165
                  A+  +  M+  G  P++ +F   + +C A    +  G+ +HA + + G +   
Sbjct: 112 QHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAV 171

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
              TSL++MY++ G LE +   F   +  +AVS+ A+I  +A      +A +   +M + 
Sbjct: 172 VATTSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRGLEALRTLQKMFL- 230

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
            E       T +T++SA      L+   ++   I   G   +  V N +++MY KCG L 
Sbjct: 231 -EGIRACSVTYITLMSAYDQPSQLKSARYIHDCILRTGFDQD--VVNVILNMYGKCGCLQ 287

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
            A  +F+S+ + DVI+WN MI  Y+      EAL  +  M +  + P+D T++SV+ ACA
Sbjct: 288 DAEAMFKSMSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDACA 347

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
            LG +++GK +H  +    +      L  SL++MY KCG +  A  +FD    K   +WN
Sbjct: 348 TLGDMEVGKQVHRRL--GDRAFQVTELANSLVNMYGKCGILDVARSIFDKTA-KGSVTWN 404

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
           AMI   A H    +A  LF  M  +G +P  ITF+ VLSAC +AGL +    YF  M QD
Sbjct: 405 AMIGAYAQHSHEQQAFELFLLMRLDGEEPSYITFMSVLSACANAGLPEEAHSYFVCMQQD 464

Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
           + + P   HYGCMV+ LG+AG   +AEAL++ M  +PD   WTS L  CR HG ++ G+ 
Sbjct: 465 HGVRPGGGHYGCMVESLGKAGRLSDAEALIQGMPFEPDVLTWTSFLANCRSHGDMKRGKF 524

Query: 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVH 585
            AK  + ++PE    YV L+ ++A AG + + + IR  + D+G++K  G S I++G+ V+
Sbjct: 525 AAKGAIRIDPEASTGYVALARIHADAGDFQEASRIRKLMLDRGIRKNAGRSIIKLGTSVY 584

Query: 586 EFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAI 645
           EF  GD+ +P+SK I++ L  +D  ++++G+ PD + V +D++   KE  L  HSE+LAI
Sbjct: 585 EFTAGDQSNPRSKEIFDELKRLDKEMKRAGYDPDMTHVAHDVEAGQKEPLLFAHSERLAI 644

Query: 646 AYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCND 705
           A+G+IST  GT +RI+KNLRVCG+CH+ TKL SKI  REII RD NRFHHFK+G+CSC D
Sbjct: 645 AFGIISTSQGTPLRIMKNLRVCGDCHAMTKLTSKITRREIIVRDSNRFHHFKNGSCSCKD 704

Query: 706 YW 707
           +W
Sbjct: 705 FW 706



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 124/419 (29%), Positives = 215/419 (51%), Gaps = 15/419 (3%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           +++SCA++ A++EG++IH  + ++GL SD +V   L+ MY + G LE ARLVF  +  ++
Sbjct: 40  VIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKN 99

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC-AHMGSLELGNW 254
             S+T LIT  A  G   +A  LF EM   ++   P+  +    ++AC A    L  G  
Sbjct: 100 VFSWTILITVCAQHGRSQEALALFYEML--KQGIQPHSVSFTAAINACSAGPEFLPAGRA 157

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           + +L+  +G    +  T +L+ MYSKCG L ++   FES+ + + +SWN MI  +     
Sbjct: 158 LHALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRR 217

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN--HQKLNNVSL 372
             EAL   ++M    I    VT+++++ A      L   ++IH  I +    Q + NV  
Sbjct: 218 GLEALRTLQKMFLEGIRACSVTYITLMSAYDQPSQLKSARYIHDCILRTGFDQDVVNV-- 275

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
              +++MY KCG ++ AE +F  M    + +WN MI+  + HG   +AL  +  M  EG+
Sbjct: 276 ---ILNMYGKCGCLQDAEAMFKSMSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGV 332

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
            PDD T+V V+ AC   G +++G+Q    +        +L +   +V++ G+ G+ D A 
Sbjct: 333 VPDDYTYVSVIDACATLGDMEVGKQVHRRLGDRAFQVTELAN--SLVNMYGKCGILDVAR 390

Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA 551
           ++    +    +  W +++GA   H   +    +   L+ L+ E P     +S + A A
Sbjct: 391 SIFD--KTAKGSVTWNAMIGAYAQHSHEQQAFELFL-LMRLDGEEPSYITFMSVLSACA 446



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 177/340 (52%), Gaps = 15/340 (4%)

Query: 237 VTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK 296
           V V+ +CA +G+L  G  +  LI   GLGS+++V+N L+ MY KCG L +AR +FE+   
Sbjct: 38  VRVIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPA 97

Query: 297 RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC-AYLGALDLGKW 355
           ++V SW ++I         +EAL LF +ML+  I+P+ V+F + + AC A    L  G+ 
Sbjct: 98  KNVFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRA 157

Query: 356 IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHG 415
           +HA + + +   + V   TSL+ MY+KCG+++ + + F+ M      SWNAMI+  A H 
Sbjct: 158 LHALL-RRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHR 216

Query: 416 KADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY 475
           +  +AL    +M  EG++   +T++ ++SA +    L   R   + ++   +        
Sbjct: 217 RGLEALRTLQKMFLEGIRACSVTYITLMSAYDQPSQLKSARYIHDCIL---RTGFDQDVV 273

Query: 476 GCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEP 535
             ++++ G+ G   +AEA+ K+M  +PD   W +++ A   HG      S A    EL  
Sbjct: 274 NVILNMYGKCGCLQDAEAMFKSMS-QPDVIAWNTMIAAYSQHGH----TSEALRFYELMQ 328

Query: 536 EN---PGAYVLLSNMYAGA--GRWDDVATIRTRLNDKGMK 570
           E    P  Y  +S + A A  G  +    +  RL D+  +
Sbjct: 329 EEGVVPDDYTYVSVIDACATLGDMEVGKQVHRRLGDRAFQ 368


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 247/660 (37%), Positives = 381/660 (57%), Gaps = 46/660 (6%)

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKS 139
           + +AL +FE++ E + V WN ++   S S     A+   V M   G   ++ T+   L +
Sbjct: 244 VDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTA 303

Query: 140 CAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSY 199
           CAK+S++  GKQ+HA V++     DP+V ++++ +YA+ G  + AR VF+    R+ VS+
Sbjct: 304 CAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSW 363

Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
           T LI G+   G   ++ +LF++M  R E    ++  + T++S C++   + L   + SL 
Sbjct: 364 TVLIGGFLQYGCFSESLELFNQM--RAELMTVDQFALATIISGCSNRMDMCLARQLHSLS 421

Query: 260 EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD--------------------- 298
              G    + ++N+LI MY+KCG+L  A  +F S+E+RD                     
Sbjct: 422 LKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAR 481

Query: 299 ----------VISWNVMIGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVLPACAYL 347
                     VI+WN M+G Y      ++ L ++  ML + ++ P+ VT++++   CA +
Sbjct: 482 EFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADM 541

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
           GA  LG  I  +  K    L+  S+  ++I MY+KCG I  A ++FD +  K L SWNAM
Sbjct: 542 GANKLGDQITGHTVKVGLILDT-SVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAM 600

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           I+G + HG   +A+ +F  M+ +G +PD I++V VLS+C+H+GL+  G+ YF+ + +D+ 
Sbjct: 601 ITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHN 660

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
           +SP L+H+ CMVDLL RAG   EA+ L+  M MKP A +W +LL AC+ HG  EL E  A
Sbjct: 661 VSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELAA 720

Query: 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF 587
           KHL +L+  + G Y+LL+ +YA AG+  D A +R  + DKG+KK PG S +EV + VH F
Sbjct: 721 KHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVKNKVHVF 780

Query: 588 LVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAY 647
              D  HPQ   I E LDE+   + + G+V   S     +  E       HHSEKLA+A+
Sbjct: 781 KAEDVSHPQVIAIREKLDELMEKIAQLGYVRTES-----LRSE------IHHSEKLAVAF 829

Query: 648 GLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           G+++      I I+KNLR+CG+CH+  KLIS +  RE + RD  RFHHFK G+CSC DYW
Sbjct: 830 GIMNLPAWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFKGGSCSCGDYW 889



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 115/419 (27%), Positives = 211/419 (50%), Gaps = 33/419 (7%)

Query: 33  SLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           SL   +K +++   KQ+H+Q+I++      +  S ++E+ A    G    A  VF ++R+
Sbjct: 300 SLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYA--KCGCFKEARRVFSSLRD 357

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            N V W  +I G         +++ + +M       + +    I+  C+    +   +Q+
Sbjct: 358 RNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQL 417

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H+  LK G      +  SLI+MYA+ G L++A  +F+    RD VS+T ++T Y+  G +
Sbjct: 418 HSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNI 477

Query: 213 DDARQLFDEMPIR------------------------------EENFVPNESTVVTVLSA 242
             AR+ FD M  R                              E++ +P+  T VT+   
Sbjct: 478 GKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRG 537

Query: 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
           CA MG+ +LG+ +       GL  +  V NA+I MYSKCG + +AR +F+ + ++D++SW
Sbjct: 538 CADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSW 597

Query: 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362
           N MI GY+     K+A+ +F  ML+   +P+ +++++VL +C++ G +  GK+    + +
Sbjct: 598 NAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKR 657

Query: 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHGKADKA 420
           +H     +  ++ ++D+ A+ GN+  A+ + D M  K  A  W A++S    HG  + A
Sbjct: 658 DHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELA 716



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 177/389 (45%), Gaps = 47/389 (12%)

Query: 162 ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDE 221
           E +   H  ++N YA+ G L  A  +F +   RD  S+  L++GY   G   DA + F  
Sbjct: 92  EPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVS 151

Query: 222 MPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC 281
           M  R  + +PN  T    + +C  +G  E+   +  L+   G   +  V   ++DM+ +C
Sbjct: 152 MR-RSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRC 210

Query: 282 G--DLVK-----------------------------ARDLFESIEKRDVISWNVMIGGYT 310
           G  D                                A +LFES+ +RDV+SWN+M+   +
Sbjct: 211 GAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALS 270

Query: 311 HTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNV 370
            +   +EAL +   M    +  +  T+ S L ACA L +L  GK +HA + ++   ++  
Sbjct: 271 QSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPY 330

Query: 371 SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE 430
            + ++++++YAKCG  K A +VF  +  +   SW  +I G   +G   ++L LF++M  E
Sbjct: 331 -VASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAE 389

Query: 431 GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY------GCMVDLLGR 484
            +  D      ++S C++   + + RQ        + +S K  H         ++ +  +
Sbjct: 390 LMTVDQFALATIISGCSNRMDMCLARQL-------HSLSLKSGHTRAVVISNSLISMYAK 442

Query: 485 AGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
            G    AE++  +ME + D   WT +L A
Sbjct: 443 CGNLQNAESIFSSMEER-DIVSWTGMLTA 470



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 141/316 (44%), Gaps = 45/316 (14%)

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
           L+ G     N+   N +++ Y+K G L  A +LF  + +RDV SWN ++ GY  +  + +
Sbjct: 85  LLRGDITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLD 144

Query: 318 ALMLFRQMLQSNIE-PNDVTFLSVLPACAYLGALDLGKWIHAYIDK-NHQKLNNVSLWTS 375
           A+  F  M +S    PN  TF   + +C  LG  ++   +   + K   Q   +V+  T 
Sbjct: 145 AMESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVA--TG 202

Query: 376 LIDMYAKCGNIKAAE-------------------------------QVFDGMGYKTLASW 404
           ++DM+ +CG +  A                                ++F+ M  + + SW
Sbjct: 203 IVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSW 262

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
           N M+S L+  G+A +ALS+   M   G++ D  T+   L+AC     L  G+Q    +I+
Sbjct: 263 NMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIR 322

Query: 465 DYKISPKLQHY--GCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG---- 518
                P +  Y    MV+L  + G F EA  +  ++  + +   WT L+G    +G    
Sbjct: 323 SL---PCIDPYVASAMVELYAKCGCFKEARRVFSSLRDR-NTVSWTVLIGGFLQYGCFSE 378

Query: 519 RLELGESVAKHLLELE 534
            LEL   +   L+ ++
Sbjct: 379 SLELFNQMRAELMTVD 394


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/480 (46%), Positives = 317/480 (66%), Gaps = 4/480 (0%)

Query: 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDL 290
           P+  T   +L AC  + +L  G  + +    +GL + + V N+L+  Y  CG    A  +
Sbjct: 118 PDTHTYPPLLQACTRLLALREGESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRV 177

Query: 291 FESIE--KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348
           F+ I   +R+++SWN ++ G+       E L +FR+ L++++ P+  T +SVL ACA +G
Sbjct: 178 FDEIPVLERNLVSWNSVMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIG 237

Query: 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-KTLASWNAM 407
           AL LG+ +H +  K    + N  +  +LID+YAKCG ++ A +VF+ MG  +T+ SW ++
Sbjct: 238 ALTLGRRVHVFASKV-GLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSL 296

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           I GLA +G    AL LF  M  E L P DIT VGVL AC+H GL+D G +YFN M   Y 
Sbjct: 297 IVGLAGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYG 356

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
           I+P ++H GCMVDLLGRAG  +EA   + TM ++P+A +W +LLGAC +H +LELGE+  
Sbjct: 357 IAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGACAMHKKLELGEAAW 416

Query: 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF 587
             L+EL+P + G YVLLSN+YA  GRW D   +R  +   G++K PG S +E+ + V+EF
Sbjct: 417 ARLVELDPGHSGDYVLLSNLYAAVGRWADAHVLRKTMATHGVRKNPGHSLVELRNSVYEF 476

Query: 588 LVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAY 647
           ++GD+ HP+S  IY+ L EI   L   G+VP TS VL D++EE KE AL++HSE+LAIA+
Sbjct: 477 VMGDRSHPESDQIYQTLAEIAERLRCQGYVPRTSNVLADIEEEEKETALNYHSERLAIAF 536

Query: 648 GLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            L+ + PG+ IRIVKNLR+CG+CH   KLISK+++REII RDR+RFHHFK G CSC DYW
Sbjct: 537 ALLKSLPGSPIRIVKNLRMCGDCHLVIKLISKVYDREIIVRDRSRFHHFKGGECSCKDYW 596



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 206/393 (52%), Gaps = 18/393 (4%)

Query: 47  KQVHSQIIKT-GLHNTQFALSK-----LIEICAVSPFGDLSYALLVFETI-REPNQVIWN 99
           KQ+H++ ++  G+  +   L+K     L  + A  P   L YA+ V   +  +P+    N
Sbjct: 35  KQIHARALRAAGVPLSHPLLAKHLLFHLASLRAGPP--PLLYAVTVLSCLLPDPDPFSLN 92

Query: 100 NIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKL 159
            ++R  + S+ P +A+  + R +     P+T+T+P +L++C ++ A+ EG+ +HA   K 
Sbjct: 93  TVLRIAASSAHPRIALALHRRRLAP---PDTHTYPPLLQACTRLLALREGESLHAEAAKN 149

Query: 160 GLESDPFVHTSLINMYAQNGELESARLVFNKSSL--RDAVSYTALITGYASRGYLDDARQ 217
           GL +  FV  SL++ Y   G  ESA  VF++  +  R+ VS+ +++ G+A+ G  ++   
Sbjct: 150 GLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGFAANGRPNEVLT 209

Query: 218 LFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDM 277
           +F E    E + +P+  T+V+VL+ACA +G+L LG  V       GL  N HV NALID+
Sbjct: 210 IFRE--TLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNSHVGNALIDL 267

Query: 278 YSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVT 336
           Y+KCG +  A  +FE +   R V+SW  +I G       K+AL LF  M +  + P D+T
Sbjct: 268 YAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDALELFGLMERERLIPTDIT 327

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
            + VL AC++ G +D G      +   +     +     ++D+  + G ++ A      M
Sbjct: 328 MVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEAHNYITTM 387

Query: 397 GYKTLA-SWNAMISGLAMHGKADKALSLFSRMI 428
             +  A  W  ++   AMH K +   + ++R++
Sbjct: 388 PVEPNAVVWRTLLGACAMHKKLELGEAAWARLV 420



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 144/281 (51%), Gaps = 12/281 (4%)

Query: 36  LLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR- 91
           LL  CT +  +++   +H++  K GL    F  + L+        G    A  VF+ I  
Sbjct: 126 LLQACTRLLALREGESLHAEAAKNGLVALVFVKNSLVH--HYGACGLFESAHRVFDEIPV 183

Query: 92  -EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            E N V WN+++ G + +  P   +  +   + +  +P+ +T   +L +CA+I A++ G+
Sbjct: 184 LERNLVSWNSVMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGR 243

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL-RDAVSYTALITGYASR 209
           ++H    K+GL  +  V  +LI++YA+ G +E A  VF +  + R  VS+T+LI G A  
Sbjct: 244 RVHVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGN 303

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNL 268
           G+  DA +LF  M    E  +P + T+V VL AC+H G ++ G  +   + + +G+   +
Sbjct: 304 GFGKDALELFGLM--ERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGI 361

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGG 308
                ++D+  + G + +A +   ++  + + + W  ++G 
Sbjct: 362 EHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGA 402


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/596 (40%), Positives = 347/596 (58%), Gaps = 43/596 (7%)

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG--Y 206
            K++HA ++K GL     +  +L+N Y + G ++ A  +F+    RD V++ +L+T    
Sbjct: 22  AKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNL 81

Query: 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL--GNWVCSLIEGHGL 264
           ++R +    R L     +    F P+     +++ ACA++G L +  G  V +       
Sbjct: 82  SNRPH----RALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPF 137

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
             +  V ++LIDMY+K G     R +F+SI   + ISW  MI GY  +    EA  LFRQ
Sbjct: 138 SDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQ 197

Query: 325 -------------------------------MLQSNIEPNDVTFLS-VLPACAYLGALDL 352
                                          M    I   D   LS V+ ACA L   +L
Sbjct: 198 TPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWEL 257

Query: 353 GKWIHAY-IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGL 411
           GK +H   I   ++    +S   +LIDMYAKC ++ AA+ +F  M  K + SW ++I G 
Sbjct: 258 GKQMHGVVITLGYESCLFIS--NALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGT 315

Query: 412 AMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK 471
           A HG+A++AL+L+  M+  G++P+++TFVG++ AC+HAGL+  GR  F  M++D+ ISP 
Sbjct: 316 AQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPS 375

Query: 472 LQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLL 531
           LQHY C++DL  R+G  DEAE L++TM + PD   W +LL +C+ HG  ++   +A HLL
Sbjct: 376 LQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLL 435

Query: 532 ELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGD 591
            L+PE+P +Y+LLSN+YAGAG W+DV+ +R  +     KK PG S I++G   H F  G+
Sbjct: 436 NLKPEDPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCIDLGKGSHVFYAGE 495

Query: 592 KVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLIS 651
             HP    I  ++ E+D  + K G+ PDTS VL+DMD++ KE  L  HSE+LA+AYGL+ 
Sbjct: 496 TSHPMRDEIIGLMRELDEEMRKRGYAPDTSSVLHDMDQQEKERQLFWHSERLAVAYGLLK 555

Query: 652 TKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
             PGT IRIVKNLRVCG+CH+  KLIS I NREI  RD  R+HHFKDGNCSCND+W
Sbjct: 556 AVPGTVIRIVKNLRVCGDCHTVLKLISAITNREIYVRDAKRYHHFKDGNCSCNDFW 611



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/423 (28%), Positives = 222/423 (52%), Gaps = 37/423 (8%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           K++H+QIIK GL+  +   + L+   A    G +  AL +F+ +   + V W +++   +
Sbjct: 23  KKLHAQIIKAGLNQHEPIPNTLLN--AYGKCGLIQDALQLFDALPRRDPVAWASLLTACN 80

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA--ISEGKQIHAHVLKLGLESD 164
           LS+ P  A+     ++ +GF P+ + F  ++K+CA +    + +GKQ+HA         D
Sbjct: 81  LSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDD 140

Query: 165 PFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPI 224
             V +SLI+MYA+ G  +  R VF+  S  +++S+T +I+GYA  G   +A +LF + P 
Sbjct: 141 DVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPY 200

Query: 225 R------------------------------EENFVPNESTVVTVLSACAHMGSLELGNW 254
           R                              E   V +   + +V+ ACA++   ELG  
Sbjct: 201 RNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQ 260

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           +  ++   G  S L ++NALIDMY+KC DLV A+ +F  + ++DV+SW  +I G      
Sbjct: 261 MHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQ 320

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
            +EAL L+ +M+ + ++PN+VTF+ ++ AC++ G +  G+ +   + ++H    ++  +T
Sbjct: 321 AEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYT 380

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
            L+D++++ G++  AE +   M       +W A++S    HG    A+ +   ++   L+
Sbjct: 381 CLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLL--NLK 438

Query: 434 PDD 436
           P+D
Sbjct: 439 PED 441


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/588 (39%), Positives = 364/588 (61%), Gaps = 13/588 (2%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P  +T+  ++ SC   +++ + +++H H+L+ G + DPF+ T LINMY+    +++AR V
Sbjct: 68  PAQHTYELLILSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKLINMYSFFDSIDNARKV 127

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNES-TVVTVLSACA-- 244
           F+K+  R    Y AL    +  G+ ++   ++  M       +P++  T   VL AC   
Sbjct: 128 FDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRM---NSIGIPSDRFTYTYVLKACVAS 184

Query: 245 --HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISW 302
              +  L  G  + + I  HG    +H+   L+DMY+K G +  A  +F  +  ++V+SW
Sbjct: 185 ECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSW 244

Query: 303 NVMIGGYTHTSDYKEALMLFRQML--QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           + MI  Y       EAL LFR+++    ++ PN VT +SVL ACA L AL+ G+ IH YI
Sbjct: 245 SAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYI 304

Query: 361 DKNHQKLNNV-SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADK 419
            +  + L+++  + ++L+ MYA+CG ++  ++VFD M  + + SWN++IS   +HG   K
Sbjct: 305 LR--KGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKK 362

Query: 420 ALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479
           A+ +F  M   G++P  I+FV VL AC+HAGL+D G+  FN+M   + I P ++HY CMV
Sbjct: 363 AIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMV 422

Query: 480 DLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG 539
           DLLGRA   +EA  +++ M ++P   +W SLLG+CR+H  +EL E  +  L +LEP N G
Sbjct: 423 DLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGSCRIHCNVELAERASIRLFDLEPTNAG 482

Query: 540 AYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKH 599
            YVLL+++YA AG WD V  ++  L  +G++KVPG S IEV   ++ F+  D+V+P+ + 
Sbjct: 483 NYVLLADIYAEAGMWDGVKRVKKLLEARGLQKVPGRSWIEVKRKIYSFVSVDEVNPRMEQ 542

Query: 600 IYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIR 659
           ++ +L ++   L++ G+VP T  VLYD+    KE  +  HSEKLA+A+GLI++  G  IR
Sbjct: 543 LHALLVKLSMELKEEGYVPQTKVVLYDLKAAEKERIVLGHSEKLAVAFGLINSSKGEVIR 602

Query: 660 IVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           I K+LR+C +CHS TK ISK  N+EI+ RD NRFHHF+DG CSC DYW
Sbjct: 603 ITKSLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRDGVCSCGDYW 650



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 217/393 (55%), Gaps = 10/393 (2%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           L+  CT+  ++   ++VH  +++ G     F  +KLI +   S F  +  A  VF+  R 
Sbjct: 76  LILSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKLINM--YSFFDSIDNARKVFDKTRN 133

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK----ISAISE 148
               ++N + R  SL+      +  Y RM   G   + +T+ ++LK+C      +S +++
Sbjct: 134 RTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNK 193

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           G++IHAH+L+ G +    + T+L++MYA+ G + +A  VFN+  +++ VS++A+I  YA 
Sbjct: 194 GREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAK 253

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
            G   +A +LF E+ +  ++  PN  T+V+VL ACA + +LE G  +   I   GL S L
Sbjct: 254 NGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYILRKGLDSIL 313

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
            V +AL+ MY++CG L   + +F+ ++KRDV+SWN +I  Y      K+A+ +F +M  +
Sbjct: 314 PVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYN 373

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            +EP+ ++F+SVL AC++ G +D GK +   +   H    +V  +  ++D+  +   ++ 
Sbjct: 374 GVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEE 433

Query: 389 AEQVFDGMGYKTLAS-WNAMISGLAMHGKADKA 420
           A ++ + M  +     W +++    +H   + A
Sbjct: 434 AAKIIENMRIEPGPKVWGSLLGSCRIHCNVELA 466


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 255/706 (36%), Positives = 386/706 (54%), Gaps = 83/706 (11%)

Query: 71  ICAVSPFGDL----SYALLVFETIREPNQVIWNNIIRGHSLSSSPV-VAIKFYVRMILSG 125
           + AV   G+L    S  +L  +T  E + VI   I+  +S  +S +  AIKF+  MI   
Sbjct: 231 LSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIER- 289

Query: 126 FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF----VHTSLINMYAQNGEL 181
              N YT+  +      I+A+S G +I A +     E DP       T+LI   AQ G +
Sbjct: 290 ---NEYTWSTM------IAALSHGGRIDAAIAVY--ERDPVKSIACRTALITGLAQCGRI 338

Query: 182 ESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR---------------- 225
           + AR++F +      VS+ ALITGY   G +++A++LFD+MP R                
Sbjct: 339 DDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNG 398

Query: 226 -------------EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
                            +P+ S++ ++  AC+++ +LE G  V SL    G   N    N
Sbjct: 399 RSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACN 458

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWN----------------------------- 303
           ALI MY KC ++  AR +F  +  +D++SWN                             
Sbjct: 459 ALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVS 518

Query: 304 --VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361
              +I  Y H     EA+  F+ M   +  PN      +L  C  LGA  +G+ IH    
Sbjct: 519 WTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAI 578

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421
           K     + + +  +LI MY KCG    + ++FD M  + + +WN +I+G A HG   +A+
Sbjct: 579 KLGMD-SELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQHGLGREAI 636

Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481
            ++  M   G+ P+++TFVG+L+AC+HAGL+D G ++F +M QDY ++P  +HY CMVDL
Sbjct: 637 KMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDL 696

Query: 482 LGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541
           LGR G    AE  +  M ++PD  IW++LLGAC++H   E+G+  A+ L  +EP N G Y
Sbjct: 697 LGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNY 756

Query: 542 VLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIY 601
           V+LSN+Y+  G W +VA +R  +  +G+ K PGCS  ++   +H F+ GDK H Q + I 
Sbjct: 757 VMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIV 816

Query: 602 EMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIV 661
             L+E+  LL+ +G+VPDT  VL+D+DEE KE +L +HSEKLA+AY L++T  G  I+I+
Sbjct: 817 ATLEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQIL 876

Query: 662 KNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           KNLR+CG+CH+  K +S +  R+I  RD NRFHHF++G+CSC D+W
Sbjct: 877 KNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 107/469 (22%), Positives = 207/469 (44%), Gaps = 53/469 (11%)

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
            G +  A  VF+ +   + + WN++I  +  +  P  A   Y    +SG   N  T   +
Sbjct: 47  LGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYD--AISG--GNMRTGAIL 102

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L    ++  + E +++   +L    E +     ++I+ Y QNG++  AR +F+    RD 
Sbjct: 103 LSGYGRLGRVLEARRVFDGML----ERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDV 158

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIR-----------------------------EE 227
            S+ +++TGY     + DAR LF++MP R                              E
Sbjct: 159 SSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHRE 218

Query: 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK-CGDLVK 286
             +P++S   + LSA   +G+L++   +  L    G   ++ +  A++++YS+    L  
Sbjct: 219 GLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDT 278

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A   FES+ +R+  +W+ MI   +H      A+ ++ +    +I        +++   A 
Sbjct: 279 AIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRT----ALITGLAQ 334

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
            G +D  + +   I +       V  W +LI  Y + G +  A+++FD M ++   SW  
Sbjct: 335 CGRIDDARILFEQIPEPI-----VVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAG 389

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
           MI+G A +G++++AL L   +   G+ P   +   +  AC++   L+ G Q  +  +   
Sbjct: 390 MIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAV--- 446

Query: 467 KISPKLQHYGC--MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
           K+  +   + C  ++ + G+    + A  +   M  K D   W S L A
Sbjct: 447 KVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTK-DIVSWNSFLAA 494



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 103/414 (24%), Positives = 168/414 (40%), Gaps = 86/414 (20%)

Query: 179 GELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVT 238
           G +  AR VF+    RD +++ ++I+ Y   G  D AR L+D +         N  T   
Sbjct: 48  GRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAIS------GGNMRTGAI 101

Query: 239 VLSACAHMGS-LELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR 297
           +LS    +G  LE       ++E      N    NA+I  Y + GD+  AR LF+++  R
Sbjct: 102 LLSGYGRLGRVLEARRVFDGMLE-----RNTVAWNAMISCYVQNGDITMARRLFDAMPSR 156

Query: 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE-------------------------- 331
           DV SWN M+ GY H+    +A  LF +M + N+                           
Sbjct: 157 DVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMH 216

Query: 332 -----PNDVTFLSVLPACAYLGALD-------------------LGKWIHAYIDKNHQKL 367
                P+   F S L A   LG LD                   +G  I     ++   L
Sbjct: 217 REGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVL 276

Query: 368 N------------NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHG 415
           +            N   W+++I   +  G I AA  V++    K++A   A+I+GLA  G
Sbjct: 277 DTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCG 336

Query: 416 KADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY 475
           + D A  LF ++     +P  +++  +++     G+++  ++ F+ M     IS     +
Sbjct: 337 RIDDARILFEQIP----EPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTIS-----W 387

Query: 476 GCMVDLLGRAGLFDEAEALLKTME---MKPDAAIWTSLLGACRVHGRLELGESV 526
             M+    + G  +EA  LL+ +    M P  +  TS+  AC     LE G  V
Sbjct: 388 AGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQV 441



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 40/214 (18%)

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           +A I    + G + +AR++F+++ +RD+I+WN MI  Y H      A  L+  +   N+ 
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR 97

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
              +  LS        G   LG+ + A    +     N   W ++I  Y + G+I  A +
Sbjct: 98  TGAI-LLS--------GYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARR 148

Query: 392 VFDGMGYKTLASWNAMISG----------------------------LAMHGKAD---KA 420
           +FD M  + ++SWN+M++G                            ++ +G+ +   KA
Sbjct: 149 LFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKA 208

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
             +F +M  EGL PD   F   LSA    G LD+
Sbjct: 209 WDIFCKMHREGLLPDQSNFASALSAVKGLGNLDV 242



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 18/185 (9%)

Query: 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG 429
           VS  ++ I    + G +  A +VFD M  + + +WN+MIS    +G  D A  L+  + G
Sbjct: 34  VSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISG 93

Query: 430 EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489
             ++   I    +LS     G +   R+ F+ M++   ++     +  M+    + G   
Sbjct: 94  GNMRTGAI----LLSGYGRLGRVLEARRVFDGMLERNTVA-----WNAMISCYVQNGDIT 144

Query: 490 EAEALLKTMEMKPDAAIWTSLL-GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548
            A  L   M  + D + W S+L G C       L    A++L E  PE     V  + M 
Sbjct: 145 MARRLFDAMPSR-DVSSWNSMLTGYCH-----SLQMVDARNLFEKMPERN--LVSWTVMI 196

Query: 549 AGAGR 553
           +G GR
Sbjct: 197 SGYGR 201


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/635 (36%), Positives = 374/635 (58%), Gaps = 8/635 (1%)

Query: 35  ALLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           +LL+ C ++ +++   Q+HS + K G+ +       L+++      GD+  AL++F +  
Sbjct: 249 SLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDL--YVKCGDVETALVIFNSSD 306

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             N V+WN ++      +    + + + +M  +G  PN +T+P IL++C     I  G+Q
Sbjct: 307 RTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQ 366

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IH+  +K G ESD +V   LI+MY++ G LE AR V      +D VS+T++I GY     
Sbjct: 367 IHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEC 426

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
             DA   F EM  ++    P+   + + +S CA + ++  G  + + I   G   ++ + 
Sbjct: 427 CKDALAAFKEM--QKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIW 484

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           NAL+++Y++CG + +A   FE IE +D I+WN ++ G+  +  ++EAL +F +M QS ++
Sbjct: 485 NALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVK 544

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
            N  TF+S L A A L  +  GK IHA + K         +  +LI +Y KCG+ + A+ 
Sbjct: 545 HNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSF-ETEVGNALISLYGKCGSFEDAKM 603

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
            F  M  +   SWN +I+  + HG+  +AL LF +M  EG++P+D+TF+GVL+AC+H GL
Sbjct: 604 EFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGL 663

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           ++ G  YF +M  +Y I P+  HY C++D+ GRAG  D A+  ++ M +  DA +W +LL
Sbjct: 664 VEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLL 723

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
            AC+VH  +E+GE  AKHLLELEP +  +YVLLSN YA   +W +   +R  + D+G++K
Sbjct: 724 SACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRK 783

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
            PG S IEV +VVH F VGD++HP ++ IY  L  I+  + K G+  +   + +D ++E 
Sbjct: 784 EPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGYKQEKYHLFHDKEQEG 843

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRV 666
           ++     HSEKLA+ +GL+S  P   +R++KNLRV
Sbjct: 844 RDPTDLVHSEKLAVTFGLMSLPPCMPLRVIKNLRV 878



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 138/468 (29%), Positives = 238/468 (50%), Gaps = 7/468 (1%)

Query: 44  QNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIR 103
           Q + ++H++ +  GL   +   + LI++   S  G +  A  VFE +   + V W  ++ 
Sbjct: 59  QVVPEIHAKAVTRGLGKYRIVGNLLIDL--YSKNGLVLPARRVFEELSARDNVSWVAMLS 116

Query: 104 GHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLES 163
           G++ +     A+  Y +M  +G VP  Y    +L SC K    ++G+ IHA   K G  S
Sbjct: 117 GYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCS 176

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
           + FV  ++I +Y + G    A  VF     RD V++  LI+G+A  G+ + A ++F+EM 
Sbjct: 177 EIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQ 236

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
                  P+  T+ ++L+ACA +G L+ G  + S +   G+ S+  +  +L+D+Y KCGD
Sbjct: 237 F--SGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGD 294

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           +  A  +F S ++ +V+ WN+M+  +   +D  ++  LF QM  + I PN  T+  +L  
Sbjct: 295 VETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRT 354

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
           C     +DLG+ IH+   K   + +++ +   LIDMY+K G ++ A +V + +  K + S
Sbjct: 355 CTCTREIDLGEQIHSLSVKTGFE-SDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVS 413

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
           W +MI+G   H     AL+ F  M   G+ PD+I     +S C     +  G Q  +A I
Sbjct: 414 WTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQ-IHARI 472

Query: 464 QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
                S  +  +  +V+L  R G   EA +  + +E K D   W  L+
Sbjct: 473 YVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHK-DEITWNGLV 519



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 105/247 (42%), Gaps = 45/247 (18%)

Query: 34  LALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           ++ LS   N+  IKQ   +H+++IKTG H+ +  +   + I      G    A + F  +
Sbjct: 551 VSALSASANLAEIKQGKQIHARVIKTG-HSFETEVGNAL-ISLYGKCGSFEDAKMEFSEM 608

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG- 149
            E N+V WN II   S     + A+  + +M   G  PN  TF  +L +C+ +  + EG 
Sbjct: 609 SERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGL 668

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
               +   + G+   P  +  +I+++ + G+                             
Sbjct: 669 SYFKSMSDEYGIRPRPDHYACVIDIFGRAGQ----------------------------- 699

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS---LIEGHGLGS 266
             LD A++  +EMPI  +  V       T+LSAC    ++E+G +       +E H   S
Sbjct: 700 --LDRAKKFIEEMPIAADAMVWR-----TLLSACKVHKNIEVGEFAAKHLLELEPHDSAS 752

Query: 267 NLHVTNA 273
            + ++NA
Sbjct: 753 YVLLSNA 759


>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
          Length = 870

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 252/659 (38%), Positives = 381/659 (57%), Gaps = 9/659 (1%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           ++VH+ +++ G  +    L+ L+ + A    GD+  A  VF+ +   + + WN +I GH 
Sbjct: 217 REVHAHVLRFGFGDEVDVLNALVTMYAKC--GDIVAARKVFDGMAVTDCISWNAMIAGHF 274

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +      ++ ++ M+ +   PN  T   +  +   +S +   K++H   +K G   D  
Sbjct: 275 ENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVA 334

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
              SLI MY   G +  A  +F++   +DA+S+TA+I+GY   G+ D A +++  M +  
Sbjct: 335 FCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMEL-- 392

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
            N  P++ T+ + L+ACA +G L++G  +  L +  G    + V NAL++MY+K   + K
Sbjct: 393 HNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDK 452

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A ++F+ + ++DV+SW+ MI G+       EAL  FR ML  +++PN VTF++ L ACA 
Sbjct: 453 AIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYML-GHVKPNSVTFIAALSACAA 511

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
            GAL  GK IHAY+ +         +  +L+D+Y KCG    A   F     K + SWN 
Sbjct: 512 TGALRSGKEIHAYVLRCGIGSEGY-VPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNI 570

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
           M+SG   HG  D ALSLF++M+  G  PD++TFV +L AC+ AG++  G + F+ M + +
Sbjct: 571 MLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKF 630

Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
            I P L+HY CMVDLL R G   EA  L+  M +KPDAA+W +LL  CR+H  +ELGE  
Sbjct: 631 SIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELA 690

Query: 527 AKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHE 586
           AK +LELEP +   +VLL ++Y  AG+W  VA +R  + +KG+++  GCS +EV  V H 
Sbjct: 691 AKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVKGVTHA 750

Query: 587 FLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIA 646
           FL  D+ HPQ K I  +L  I   ++  GF P   E L D  E  ++  L  HSE+LA+A
Sbjct: 751 FLTDDESHPQIKEINVVLHGIYERMKACGFAP--VESLED-KEVSEDDILCGHSERLAVA 807

Query: 647 YGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCND 705
           +GLI+T PGTTI + KN   C +CH   K IS+I  REI  RD  + H FKDG+CSC D
Sbjct: 808 FGLINTTPGTTISVTKNRYTCQSCHVIFKAISEIVRREITVRDTKQLHCFKDGDCSCGD 866



 Score =  210 bits (534), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 136/457 (29%), Positives = 232/457 (50%), Gaps = 6/457 (1%)

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
           FG++ +A  VF  + E +   WN ++ G+        A+  Y RM+ +G  P+ YTFP +
Sbjct: 144 FGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCV 203

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L++C  I     G+++HAHVL+ G   +  V  +L+ MYA+ G++ +AR VF+  ++ D 
Sbjct: 204 LRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDC 263

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           +S+ A+I G+      +   +LF  + + E    PN  T+ +V  A   +  +     + 
Sbjct: 264 ISWNAMIAGHFENHECEAGLELF--LTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMH 321

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
                 G   ++   N+LI MY+  G +  A  +F  +E +D +SW  MI GY       
Sbjct: 322 GFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPD 381

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           +AL ++  M   N+ P+DVT  S L ACA LG LD+G  +H  + +N   +  V +  +L
Sbjct: 382 KALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHE-LAQNKGFIRYVVVANAL 440

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           ++MYAK  +I  A +VF  M  K + SW++MI+G   + ++ +AL  F  M+G  ++P+ 
Sbjct: 441 LEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGH-VKPNS 499

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
           +TF+  LSAC   G L  G++  +A +    I  +      ++DL  + G    A A   
Sbjct: 500 VTFIAALSACAATGALRSGKE-IHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFS 558

Query: 497 TMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL 533
               K D   W  +L     HG  ++  S+   ++E+
Sbjct: 559 VHSEK-DVVSWNIMLSGFVAHGLGDIALSLFNQMVEM 594



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/353 (31%), Positives = 177/353 (50%), Gaps = 6/353 (1%)

Query: 170 SLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENF 229
           ++++M  + GE+  A  VF K   RD  S+  ++ GY   G+L++A  L+  M       
Sbjct: 136 AMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRM--LWAGM 193

Query: 230 VPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARD 289
            P+  T   VL  C  +    +G  V + +   G G  + V NAL+ MY+KCGD+V AR 
Sbjct: 194 RPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARK 253

Query: 290 LFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA 349
           +F+ +   D ISWN MI G+    + +  L LF  ML++ ++PN +T  SV  A   L  
Sbjct: 254 VFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSE 313

Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
           +   K +H +  K    + +V+   SLI MY   G +  A ++F  M  K   SW AMIS
Sbjct: 314 VGFAKEMHGFAVKRGFAI-DVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMIS 372

Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS 469
           G   +G  DKAL +++ M    + PDD+T    L+AC   G LD+G +  + + Q+    
Sbjct: 373 GYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIK-LHELAQNKGFI 431

Query: 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL-GACRVHGRLE 521
             +     ++++  ++   D+A  + K M  K D   W+S++ G C  H   E
Sbjct: 432 RYVVVANALLEMYAKSKHIDKAIEVFKFMAEK-DVVSWSSMIAGFCFNHRSFE 483



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 151/319 (47%), Gaps = 8/319 (2%)

Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
           +A +    S G L  A  L +  P       P+E   V +   C    +++ G   C+  
Sbjct: 68  SAALRALCSHGQLAQALWLLESSPEP-----PDEGAYVALFRLCEWRRAVDAGMRACARA 122

Query: 260 EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEAL 319
           +       L + NA++ M  + G++  A  +F  + +RDV SWNVM+GGY      +EAL
Sbjct: 123 DAEHPSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEAL 182

Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
            L+ +ML + + P+  TF  VL  C  +    +G+ +HA++ +     + V +  +L+ M
Sbjct: 183 DLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFG-DEVDVLNALVTM 241

Query: 380 YAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439
           YAKCG+I AA +VFDGM      SWNAMI+G   + + +  L LF  M+   +QP+ +T 
Sbjct: 242 YAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTI 301

Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME 499
             V  A      +   ++     ++    +  +     ++ +    G   +A  +   ME
Sbjct: 302 TSVTVASGMLSEVGFAKEMHGFAVKR-GFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRME 360

Query: 500 MKPDAAIWTSLLGACRVHG 518
            K DA  WT+++     +G
Sbjct: 361 TK-DAMSWTAMISGYEKNG 378


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 255/706 (36%), Positives = 386/706 (54%), Gaps = 83/706 (11%)

Query: 71  ICAVSPFGDL----SYALLVFETIREPNQVIWNNIIRGHSLSSSPV-VAIKFYVRMILSG 125
           + AV   G+L    S  +L  +T  E + VI   I+  +S  +S +  AIKF+  MI   
Sbjct: 231 LSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIER- 289

Query: 126 FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF----VHTSLINMYAQNGEL 181
              N YT+  +      I+A+S G +I A +     E DP       T+LI   AQ G +
Sbjct: 290 ---NEYTWSTM------IAALSHGGRIDAAIAVY--ERDPVKSIACRTALITGLAQCGRI 338

Query: 182 ESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR---------------- 225
           + AR++F +      VS+ ALITGY   G +++A++LFD+MP R                
Sbjct: 339 DDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNG 398

Query: 226 -------------EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
                            +P+ S++ ++  AC+++ +LE G  V SL    G   N    N
Sbjct: 399 RSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACN 458

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWN----------------------------- 303
           ALI MY KC ++  AR +F  +  +D++SWN                             
Sbjct: 459 ALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVS 518

Query: 304 --VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361
              +I  Y H     EA+  F+ M   +  PN      +L  C  LGA  +G+ IH    
Sbjct: 519 WTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAI 578

Query: 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421
           K     + + +  +LI MY KCG    + ++FD M  + + +WN +I+G A HG   +A+
Sbjct: 579 KLGMD-SELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQHGLGREAI 636

Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481
            ++  M   G+ P+++TFVG+L+AC+HAGL+D G ++F +M QDY ++P  +HY CMVDL
Sbjct: 637 KMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDL 696

Query: 482 LGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541
           LGR G    AE  +  M ++PD  IW++LLGAC++H   E+G+  A+ L  +EP N G Y
Sbjct: 697 LGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNY 756

Query: 542 VLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIY 601
           V+LSN+Y+  G W +VA +R  +  +G+ K PGCS  ++   +H F+ GDK H Q + I 
Sbjct: 757 VMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIV 816

Query: 602 EMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIV 661
             L+E+  LL+ +G+VPDT  VL+D+DEE KE +L +HSEKLA+AY L++T  G  I+I+
Sbjct: 817 ATLEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQIL 876

Query: 662 KNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           KNLR+CG+CH+  K +S +  R+I  RD NRFHHF++G+CSC D+W
Sbjct: 877 KNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 107/469 (22%), Positives = 207/469 (44%), Gaps = 53/469 (11%)

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
            G +  A  VF+ +   + + WN++I  +  +  P  A   Y    +SG   N  T   +
Sbjct: 47  LGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYD--AISG--GNMRTGAIL 102

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L    ++  + E +++   +L    E +     ++I+ Y QNG++  AR +F+    RD 
Sbjct: 103 LSGYGRLGRVLEARRVFDGML----ERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDV 158

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIR-----------------------------EE 227
            S+ +++TGY     + DAR LF++MP R                              E
Sbjct: 159 SSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHRE 218

Query: 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK-CGDLVK 286
             +P++S   + LSA   +G+L++   +  L    G   ++ +  A++++YS+    L  
Sbjct: 219 GLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDT 278

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A   FES+ +R+  +W+ MI   +H      A+ ++ +    +I        +++   A 
Sbjct: 279 AIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRT----ALITGLAQ 334

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
            G +D  + +   I +       V  W +LI  Y + G +  A+++FD M ++   SW  
Sbjct: 335 CGRIDDARILFEQIPEPI-----VVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAG 389

Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
           MI+G A +G++++AL L   +   G+ P   +   +  AC++   L+ G Q  +  +   
Sbjct: 390 MIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAV--- 446

Query: 467 KISPKLQHYGC--MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
           K+  +   + C  ++ + G+    + A  +   M  K D   W S L A
Sbjct: 447 KVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTK-DIVSWNSFLAA 494



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 103/414 (24%), Positives = 168/414 (40%), Gaps = 86/414 (20%)

Query: 179 GELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVT 238
           G +  AR VF+    RD +++ ++I+ Y   G  D AR L+D +         N  T   
Sbjct: 48  GRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAIS------GGNMRTGAI 101

Query: 239 VLSACAHMGS-LELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR 297
           +LS    +G  LE       ++E      N    NA+I  Y + GD+  AR LF+++  R
Sbjct: 102 LLSGYGRLGRVLEARRVFDGMLE-----RNTVAWNAMISCYVQNGDITMARRLFDAMPSR 156

Query: 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE-------------------------- 331
           DV SWN M+ GY H+    +A  LF +M + N+                           
Sbjct: 157 DVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMH 216

Query: 332 -----PNDVTFLSVLPACAYLGALD-------------------LGKWIHAYIDKNHQKL 367
                P+   F S L A   LG LD                   +G  I     ++   L
Sbjct: 217 REGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVL 276

Query: 368 N------------NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHG 415
           +            N   W+++I   +  G I AA  V++    K++A   A+I+GLA  G
Sbjct: 277 DTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCG 336

Query: 416 KADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY 475
           + D A  LF ++     +P  +++  +++     G+++  ++ F+ M     IS     +
Sbjct: 337 RIDDARILFEQIP----EPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTIS-----W 387

Query: 476 GCMVDLLGRAGLFDEAEALLKTME---MKPDAAIWTSLLGACRVHGRLELGESV 526
             M+    + G  +EA  LL+ +    M P  +  TS+  AC     LE G  V
Sbjct: 388 AGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQV 441



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 40/214 (18%)

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           +A I    + G + +AR++F+++ +RD+I+WN MI  Y H      A  L+  +   N+ 
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR 97

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
              +  LS        G   LG+ + A    +     N   W ++I  Y + G+I  A +
Sbjct: 98  TGAI-LLS--------GYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARR 148

Query: 392 VFDGMGYKTLASWNAMISG----------------------------LAMHGKAD---KA 420
           +FD M  + ++SWN+M++G                            ++ +G+ +   KA
Sbjct: 149 LFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKA 208

Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
             +F +M  EGL PD   F   LSA    G LD+
Sbjct: 209 WDIFCKMHREGLLPDQSNFASALSAVKGLGNLDV 242



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 18/185 (9%)

Query: 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG 429
           VS  ++ I    + G +  A +VFD M  + + +WN+MIS    +G  D A  L+  + G
Sbjct: 34  VSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISG 93

Query: 430 EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489
             ++   I    +LS     G +   R+ F+ M++   ++     +  M+    + G   
Sbjct: 94  GNMRTGAI----LLSGYGRLGRVLEARRVFDGMLERNTVA-----WNAMISCYVQNGDIT 144

Query: 490 EAEALLKTMEMKPDAAIWTSLL-GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548
            A  L   M  + D + W S+L G C       L    A++L E  PE     V  + M 
Sbjct: 145 MARRLFDAMPSR-DVSSWNSMLTGYCH-----SLQMVDARNLFEKMPERN--LVSWTVMI 196

Query: 549 AGAGR 553
           +G GR
Sbjct: 197 SGYGR 201


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/635 (36%), Positives = 374/635 (58%), Gaps = 8/635 (1%)

Query: 35  ALLSKCTNMQNIK---QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           +LL+ C ++ +++   Q+HS + K G+ +       L+++      GD+  AL++F +  
Sbjct: 249 SLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDL--YVKCGDVETALVIFNSSD 306

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             N V+WN ++      +    + + + +M  +G  PN +T+P IL++C     I  G+Q
Sbjct: 307 RTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQ 366

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           IH+  +K G ESD +V   LI+MY++ G LE AR V      +D VS+T++I GY     
Sbjct: 367 IHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEC 426

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
             DA   F EM  ++    P+   + + +S CA + ++  G  + + I   G   ++ + 
Sbjct: 427 CKDALAAFKEM--QKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIW 484

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           NAL+++Y++CG + +A   FE IE +D I+WN ++ G+  +  ++EAL +F +M QS ++
Sbjct: 485 NALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVK 544

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
            N  TF+S L A A L  +  GK IHA + K         +  +LI +Y KCG+ + A+ 
Sbjct: 545 HNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSF-ETEVGNALISLYGKCGSFEDAKM 603

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
            F  M  +   SWN +I+  + HG+  +AL LF +M  EG++P+D+TF+GVL+AC+H GL
Sbjct: 604 EFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGL 663

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           ++ G  YF +M  +Y I P+  HY C++D+ GRAG  D A+  ++ M +  DA +W +LL
Sbjct: 664 VEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLL 723

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
            AC+VH  +E+GE  AKHLLELEP +  +YVLLSN YA   +W +   +R  + D+G++K
Sbjct: 724 SACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRK 783

Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
            PG S IEV +VVH F VGD++HP ++ IY  L  I+  + K G+  +   + +D ++E 
Sbjct: 784 EPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGYKQEKYHLFHDKEQEG 843

Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRV 666
           ++     HSEKLA+ +GL+S  P   +R++KNLRV
Sbjct: 844 RDPTDLVHSEKLAVTFGLMSLPPCMPLRVIKNLRV 878



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 138/468 (29%), Positives = 238/468 (50%), Gaps = 7/468 (1%)

Query: 44  QNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIR 103
           Q + ++H++ +  GL   +   + LI++   S  G +  A  VFE +   + V W  ++ 
Sbjct: 59  QVVPEIHAKAVTRGLGKYRIVGNLLIDL--YSKNGLVLPARRVFEELSARDNVSWVAMLS 116

Query: 104 GHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLES 163
           G++ +     A+  Y +M  +G VP  Y    +L SC K    ++G+ IHA   K G  S
Sbjct: 117 GYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCS 176

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
           + FV  ++I +Y + G    A  VF     RD V++  LI+G+A  G+ + A ++F+EM 
Sbjct: 177 EIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQ 236

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
                  P+  T+ ++L+ACA +G L+ G  + S +   G+ S+  +  +L+D+Y KCGD
Sbjct: 237 F--SGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGD 294

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
           +  A  +F S ++ +V+ WN+M+  +   +D  ++  LF QM  + I PN  T+  +L  
Sbjct: 295 VETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRT 354

Query: 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS 403
           C     +DLG+ IH+   K   + +++ +   LIDMY+K G ++ A +V + +  K + S
Sbjct: 355 CTCTREIDLGEQIHSLSVKTGFE-SDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVS 413

Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
           W +MI+G   H     AL+ F  M   G+ PD+I     +S C     +  G Q  +A I
Sbjct: 414 WTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQ-IHARI 472

Query: 464 QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
                S  +  +  +V+L  R G   EA +  + +E K D   W  L+
Sbjct: 473 YVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHK-DEITWNGLV 519



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 105/247 (42%), Gaps = 45/247 (18%)

Query: 34  LALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           ++ LS   N+  IKQ   +H+++IKTG H+ +  +   + I      G    A + F  +
Sbjct: 551 VSALSASANLAEIKQGKQIHARVIKTG-HSFETEVGNAL-ISLYGKCGSFEDAKMEFSEM 608

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG- 149
            E N+V WN II   S     + A+  + +M   G  PN  TF  +L +C+ +  + EG 
Sbjct: 609 SERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGL 668

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
               +   + G+   P  +  +I+++ + G+                             
Sbjct: 669 SYFKSMSDEYGIRPRPDHYACVIDIFGRAGQ----------------------------- 699

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS---LIEGHGLGS 266
             LD A++  +EMPI  +  V       T+LSAC    ++E+G +       +E H   S
Sbjct: 700 --LDRAKKFIEEMPIAADAMVWR-----TLLSACKVHKNIEVGEFAAKHLLELEPHDSAS 752

Query: 267 NLHVTNA 273
            + ++NA
Sbjct: 753 YVLLSNA 759


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/545 (42%), Positives = 343/545 (62%), Gaps = 11/545 (2%)

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
           D   + +L++ +  +G+ + AR +F    +RD VS+  +++G +  G +++A+ +F  MP
Sbjct: 128 DAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMP 187

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
           +R      + + +V+  +    M + E   W  +  E      +  +  A++  Y   G+
Sbjct: 188 VRNS---VSWNAMVSGFACSRDMSAAE--EWFRNAPEK----GDAVLWTAMVSGYMDIGN 238

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVLP 342
           +VKA + FE++  R+++SWN ++ GY   S   +AL LFR M+ ++N++PN  T  SVL 
Sbjct: 239 VVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLL 298

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
            C+ L AL  GK IH +  K      N+++ TSL+ MY KCG++ +A ++F  M  + + 
Sbjct: 299 GCSNLSALGFGKQIHQWCMKLPLS-RNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVV 357

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           +WNAMISG A HG   +A++LF RM  EG++P+ ITFV VL+AC H GL D G + F  M
Sbjct: 358 AWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGM 417

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
            + Y I P++ HY CMVDLL RAG  + A  L+++M  +P  + + +LL ACRV+  LE 
Sbjct: 418 QELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEF 477

Query: 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582
            E  A  L+E +P++ GAYV L+N+YAGA +WDDV+ +R  + D  + K PG S IE+  
Sbjct: 478 AELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKG 537

Query: 583 VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEK 642
           V+HEF   D++HPQ   I+E L ++   ++  G+VPD   VL+D+DE  K   L  HSEK
Sbjct: 538 VMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEK 597

Query: 643 LAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCS 702
           LAI++GLIST PG T+RI KNLRVCG+CH+A K+ISKI +REII RD  RFHHF+ G+CS
Sbjct: 598 LAISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCS 657

Query: 703 CNDYW 707
           C DYW
Sbjct: 658 CGDYW 662



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 161/322 (50%), Gaps = 8/322 (2%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           GD   A  +F ++   + V WN ++ G S S +   A   ++ M     V N+ ++  ++
Sbjct: 143 GDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMP----VRNSVSWNAMV 198

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
              A    +S  ++   +  + G   D  + T++++ Y   G +  A   F    +R+ V
Sbjct: 199 SGFACSRDMSAAEEWFRNAPEKG---DAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLV 255

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           S+ A++ GY    + DDA +LF  M +RE N  PN ST+ +VL  C+++ +L  G  +  
Sbjct: 256 SWNAVVAGYVKNSHADDALRLFRTM-VREANVQPNASTLSSVLLGCSNLSALGFGKQIHQ 314

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
                 L  NL V  +L+ MY KCGDL  A  LF  +  RDV++WN MI GY    D KE
Sbjct: 315 WCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKE 374

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           A+ LF +M    +EPN +TF++VL AC + G  D G      + + +     V  ++ ++
Sbjct: 375 AINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMV 434

Query: 378 DMYAKCGNIKAAEQVFDGMGYK 399
           D+  + G ++ A  +   M ++
Sbjct: 435 DLLCRAGKLERAVDLIRSMPFE 456



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 121/282 (42%), Gaps = 33/282 (11%)

Query: 282 GDLVKARDLFESIEKRDVISWNVMIGGYTHT-SDYKEALMLFRQMLQSNIEPNDVTFLSV 340
           GDL  A + F S  ++   ++N ++ GY        +A  LF ++      P+ V++ ++
Sbjct: 80  GDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPT----PDAVSYNTL 135

Query: 341 LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT 400
           L      G  D  + + A +      + +V  W +++   +K G ++ A+ VF  M  + 
Sbjct: 136 LSCHFASGDADGARRLFASM-----PVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRN 190

Query: 401 LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR---- 456
             SWNAM+SG A       A   F     +G   D + +  ++S     G +DIG     
Sbjct: 191 SVSWNAMVSGFACSRDMSAAEEWFRNAPEKG---DAVLWTAMVS-----GYMDIGNVVKA 242

Query: 457 -QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM----EMKPDAAIWTSLL 511
            +YF AM     +S     +  +V    +    D+A  L +TM     ++P+A+  +S+L
Sbjct: 243 IEYFEAMPVRNLVS-----WNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVL 297

Query: 512 GACRVHGRLELGESVAKHLLELE-PENPGAYVLLSNMYAGAG 552
             C     L  G+ + +  ++L    N      L +MY   G
Sbjct: 298 LGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCG 339


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 245/619 (39%), Positives = 360/619 (58%), Gaps = 8/619 (1%)

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE-GKQ 151
           P  V +   I G +  + P+ A+  +  M+  G  PN +TFP   K+ A     S  G Q
Sbjct: 82  PTVVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRSAAGTQ 141

Query: 152 IHAHVLKLG-LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           +HA  L+ G L  D FV  + ++MY + G L  AR +F++   R+ V++ A++T     G
Sbjct: 142 LHALALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAVLDG 201

Query: 211 Y-LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
             L+     F    +R    +PN  +V    +ACA M +L LG      +   G G ++ 
Sbjct: 202 RPLETVEAYFG---LRGAGGMPNVVSVCAFFNACAGMTNLSLGEQFYGFVAKCGFGKDVS 258

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           V+N+++D Y KC  + KAR +F+ +  R+ +SW  M+  Y      +EA  ++    ++ 
Sbjct: 259 VSNSVVDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRAG 318

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
            EP D    SVL  CA L  LDLG+ +HA   ++    +N+ + ++L+DMY KCG I+ A
Sbjct: 319 EEPTDFMVSSVLTTCAGLLGLDLGRALHAVAVRSCID-SNIFVASALVDMYGKCGGIEDA 377

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMI-GEGLQPDDITFVGVLSACNH 448
           EQVF  M  + L +WNAMI G A  G A  ALS+F +MI G+   P+ IT V VL+AC+ 
Sbjct: 378 EQVFFEMPQRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLVNVLTACSR 437

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
            GL   G + F  M   + I P+++HY C+VDLL RAG+ + A  +++ M M+P  ++W 
Sbjct: 438 GGLTKEGYELFQTMKWRFGIEPRIEHYACVVDLLCRAGMEERAYKIIQGMPMRPSISVWG 497

Query: 509 SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568
           +LLG C++HG+ ELG   A+ L EL+P++ G +VLLSNM A AGRW +   +R  + + G
Sbjct: 498 ALLGGCKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVG 557

Query: 569 MKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
           +KK PG S I   +VVH F   D  H  ++ I  +L ++   ++ +G++PDT   LYD++
Sbjct: 558 IKKDPGRSWITWKNVVHVFQAKDTTHDMNREIQALLAKLKGQMQAAGYMPDTQYALYDLE 617

Query: 629 EEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIAR 688
           EE KE  +  HSEKLA+A+GLI   PG  IRI+KNLR+C +CH A K IS I  REII R
Sbjct: 618 EEEKESEVFQHSEKLALAFGLICIPPGIPIRIMKNLRICVDCHRAFKFISGIAGREIIVR 677

Query: 689 DRNRFHHFKDGNCSCNDYW 707
           D N FHHFK+  CSC DYW
Sbjct: 678 DNNMFHHFKNYECSCKDYW 696



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 175/343 (51%), Gaps = 4/343 (1%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G L+ A  +F+ +   N V WN ++    L   P+  ++ Y  +  +G +PN  +     
Sbjct: 170 GCLALARRLFDEMPNRNVVAWNAVMTNAVLDGRPLETVEAYFGLRGAGGMPNVVSVCAFF 229

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
            +CA ++ +S G+Q +  V K G   D  V  S+++ Y +   +  AR VF+   +R+ V
Sbjct: 230 NACAGMTNLSLGEQFYGFVAKCGFGKDVSVSNSVVDFYGKCRCVGKARAVFDGMGVRNNV 289

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           S+ +++  YA  G  ++A   F  +  R     P +  V +VL+ CA +  L+LG  + +
Sbjct: 290 SWCSMVVAYAQNGAEEEA--FFVYLGARRAGEEPTDFMVSSVLTTCAGLLGLDLGRALHA 347

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
           +     + SN+ V +AL+DMY KCG +  A  +F  + +R++++WN MIGGY H  D   
Sbjct: 348 VAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQRNLVTWNAMIGGYAHIGDAHN 407

Query: 318 ALMLFRQMLQSN-IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           AL +F +M+      PN +T ++VL AC+  G    G  +   +         +  +  +
Sbjct: 408 ALSVFDKMIMGQETAPNYITLVNVLTACSRGGLTKEGYELFQTMKWRFGIEPRIEHYACV 467

Query: 377 IDMYAKCGNIKAAEQVFDGMGYK-TLASWNAMISGLAMHGKAD 418
           +D+  + G  + A ++  GM  + +++ W A++ G  MHGK +
Sbjct: 468 VDLLCRAGMEERAYKIIQGMPMRPSISVWGALLGGCKMHGKTE 510



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 136/282 (48%), Gaps = 14/282 (4%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGD---LSYALLVFE 88
           A  + C  M N+   +Q +  + K G     F     +    V  +G    +  A  VF+
Sbjct: 227 AFFNACAGMTNLSLGEQFYGFVAKCG-----FGKDVSVSNSVVDFYGKCRCVGKARAVFD 281

Query: 89  TIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE 148
            +   N V W +++  ++ + +   A   Y+    +G  P  +    +L +CA +  +  
Sbjct: 282 GMGVRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRAGEEPTDFMVSSVLTTCAGLLGLDL 341

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
           G+ +HA  ++  ++S+ FV ++L++MY + G +E A  VF +   R+ V++ A+I GYA 
Sbjct: 342 GRALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQRNLVTWNAMIGGYAH 401

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH-GLGSN 267
            G   +A  +FD+M + +E   PN  T+V VL+AC+  G  + G  +   ++   G+   
Sbjct: 402 IGDAHNALSVFDKMIMGQET-APNYITLVNVLTACSRGGLTKEGYELFQTMKWRFGIEPR 460

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVIS-WNVMIGG 308
           +     ++D+  + G   +A  + + +  R  IS W  ++GG
Sbjct: 461 IEHYACVVDLLCRAGMEERAYKIIQGMPMRPSISVWGALLGG 502


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 243/624 (38%), Positives = 361/624 (57%), Gaps = 22/624 (3%)

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145
           VFE + E N V W  +++G+        A   + RM     V  T  F  +         
Sbjct: 101 VFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGL--------- 151

Query: 146 ISEGKQIHAHVL-KLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
           I +G+   A  L  +    D    T++I    + G ++ ARL+F++   R+ V++T +IT
Sbjct: 152 IDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMIT 211

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
           GY     +D AR+LF+ MP +       E +  ++L      G +E       ++    +
Sbjct: 212 GYRQNNRVDVARKLFEVMPEK------TEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPV 265

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
            +     NA+I  + + G++ KAR +F+ +E RD  +W  MI  Y       EAL LF Q
Sbjct: 266 IA----CNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQ 321

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           M +  + P+  + +S+L  CA L +L  G+ +HA++ +  Q  ++V + + L+ MY KCG
Sbjct: 322 MQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRC-QFDDDVYVASVLMTMYVKCG 380

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
            +  A+ VFD    K +  WN++ISG A HG  ++AL +F  M   G  P+ +T + +L+
Sbjct: 381 ELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILT 440

Query: 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504
           AC++AG L+ G + F +M   + ++P ++HY C VD+LGRAG  D+A  L+++M +KPDA
Sbjct: 441 ACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDA 500

Query: 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564
            +W +LLGAC+ H RL+L E  AK L E EP+N G YVLLS++ A   +W DVA +R  +
Sbjct: 501 TVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNM 560

Query: 565 NDKGMKKVPGCSSIEVGSVVHEFLVGD-KVHPQSKHIYEMLDEIDALLEKSGFVPDTSEV 623
               + K PGCS IEVG  VH F  G  K HP+   I  ML++ D LL ++G+ PD S V
Sbjct: 561 RTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHV 620

Query: 624 LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNR 683
           L+D+DEE K  +LS HSE+LA+AYGL+    G  IR++KNLRVCG+CH+A KLISK+  R
Sbjct: 621 LHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTER 680

Query: 684 EIIARDRNRFHHFKDGNCSCNDYW 707
           EII RD NRFHHF +G CSC DYW
Sbjct: 681 EIILRDANRFHHFNNGECSCRDYW 704



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 156/303 (51%), Gaps = 10/303 (3%)

Query: 71  ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNT 130
           I      G++S A  VF+ + + +   W  +I+ +      + A+  + +M   G  P+ 
Sbjct: 272 IVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSF 331

Query: 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK 190
            +   IL  CA ++++  G+Q+HAH+++   + D +V + L+ MY + GEL  A+LVF++
Sbjct: 332 PSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDR 391

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250
            S +D + + ++I+GYAS G  ++A ++F EMP      +PN+ T++ +L+AC++ G LE
Sbjct: 392 FSSKDIIMWNSIISGYASHGLGEEALKIFHEMP--SSGTMPNKVTLIAILTACSYAGKLE 449

Query: 251 LGNWVCSLIEGH-GLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGG 308
            G  +   +E    +   +   +  +DM  + G + KA +L ES+  K D   W  ++G 
Sbjct: 450 EGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGA 509

Query: 309 YTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN 368
               S    A +  +++ ++  EP++     +L +          KW    + + + + N
Sbjct: 510 CKTHSRLDLAEVAAKKLFEN--EPDNAGTYVLLSSI----NASRSKWGDVAVVRKNMRTN 563

Query: 369 NVS 371
           NVS
Sbjct: 564 NVS 566



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 160/363 (44%), Gaps = 24/363 (6%)

Query: 171 LINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV 230
           L++ Y +N  +  AR VF     R+ VS+TA++ GY   G + +A  LF  MP R     
Sbjct: 85  LVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPER----- 139

Query: 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDL 290
            NE +   +       G ++    +  ++    + ++ ++   L     + G + +AR +
Sbjct: 140 -NEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGL----CREGRVDEARLI 194

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350
           F+ + +R+V++W  MI GY   +    A  LF  M     E  +V++ S+L      G +
Sbjct: 195 FDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVM----PEKTEVSWTSMLLGYTLSGRI 250

Query: 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISG 410
           +  +     +      +  V    ++I  + + G I  A +VFD M  +  A+W  MI  
Sbjct: 251 EDAEEFFEVM-----PMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKA 305

Query: 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470
               G   +AL LF++M  +G++P   + + +LS C     L  GRQ    +++  +   
Sbjct: 306 YERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVR-CQFDD 364

Query: 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHL 530
            +     ++ +  + G   +A+ +      K D  +W S++     HG   LGE   K  
Sbjct: 365 DVYVASVLMTMYVKCGELVKAKLVFDRFSSK-DIIMWNSIISGYASHG---LGEEALKIF 420

Query: 531 LEL 533
            E+
Sbjct: 421 HEM 423



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 99/423 (23%), Positives = 169/423 (39%), Gaps = 78/423 (18%)

Query: 172 INMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVP 231
           I+  ++ G++  AR  F+    +   S+ ++++GY S G   +ARQLFDEM   E N V 
Sbjct: 24  ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMS--ERNVV- 80

Query: 232 NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLF 291
                                +W                 N L+  Y K   +V+AR++F
Sbjct: 81  ---------------------SW-----------------NGLVSGYIKNRMIVEARNVF 102

Query: 292 ESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTF-------------- 337
           E + +R+V+SW  M+ GY       EA  LF +M + N     V F              
Sbjct: 103 ELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARK 162

Query: 338 -LSVLPACAYLGALDL-------GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
              ++P    + + ++       G+   A +  +  +  NV  WT++I  Y +   +  A
Sbjct: 163 LYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVA 222

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
            ++F+ M  KT  SW +M+ G  + G+ + A   F  M  + +   +   VG        
Sbjct: 223 RKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGF----GEV 278

Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME---MKPDAAI 506
           G +   R+ F+ M +D   +     +  M+    R G   EA  L   M+   ++P    
Sbjct: 279 GEISKARRVFDLM-EDRDNAT----WRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPS 333

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV--LLSNMYAGAGRWDDVATIRTRL 564
             S+L  C     L+ G  V  HL+  + ++   YV  +L  MY   G       +  R 
Sbjct: 334 LISILSVCATLASLQYGRQVHAHLVRCQFDDD-VYVASVLMTMYVKCGELVKAKLVFDRF 392

Query: 565 NDK 567
           + K
Sbjct: 393 SSK 395



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 126/309 (40%), Gaps = 60/309 (19%)

Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
           I   S+ G + +AR  F+S++ + + SWN ++ GY      KEA  LF +M +       
Sbjct: 24  ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSE------- 76

Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
                                             NV  W  L+  Y K   I  A  VF+
Sbjct: 77  ---------------------------------RNVVSWNGLVSGYIKNRMIVEARNVFE 103

Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
            M  + + SW AM+ G    G   +A SLF RM     + +++++  +       G +D 
Sbjct: 104 LMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMP----ERNEVSWTVMFGGLIDDGRIDK 159

Query: 455 GRQYFNAM-IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGA 513
            R+ ++ M ++D   S        M+  L R G  DEA  +   M  + +   WT+++  
Sbjct: 160 ARKLYDMMPVKDVVASTN------MIGGLCREGRVDEARLIFDEMRER-NVVTWTTMITG 212

Query: 514 CRVHGRLELGESVAKHLLELEPENPG-AYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
            R + R++    VA+ L E+ PE    ++  +   Y  +GR +D            MK V
Sbjct: 213 YRQNNRVD----VARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEF---FEVMPMKPV 265

Query: 573 PGCSSIEVG 581
             C+++ VG
Sbjct: 266 IACNAMIVG 274


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/486 (45%), Positives = 322/486 (66%), Gaps = 4/486 (0%)

Query: 225 REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
           R    +P+  T   ++ ACA + +L  G  + +    +G  + + V N+L+ +Y  CG  
Sbjct: 108 RRRLALPDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLF 167

Query: 285 VKARDLFES--IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
             A  +F+   +  R+++SWN M+  +       E L +F +ML  +  P+  T +SVL 
Sbjct: 168 ESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLT 227

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-KTL 401
           ACA  GAL LG+ +H Y++K    + N  +  +LID+YAKCG++  A ++F+ MG  +T+
Sbjct: 228 ACAEFGALALGRRVHVYVEKV-GLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTV 286

Query: 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNA 461
            SW ++I GLA +G   +AL LFS M  E L P +IT VGVL AC+H GL+D G +YF+ 
Sbjct: 287 VSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDR 346

Query: 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521
           M +DY ISP+++H GCMVDLLGRAG  +EA   + TM ++P+A +W +LLG+C +H +LE
Sbjct: 347 MKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLE 406

Query: 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
           LG+   + L+EL+P + G YVLLSN+YA  G W DV  +R  +    ++K PG S +E+ 
Sbjct: 407 LGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELR 466

Query: 582 SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
           + V+EF++GD+ HP+S+ IYEML EI   L + G++P TS VL D++EE KE AL++HSE
Sbjct: 467 NSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKETALNYHSE 526

Query: 642 KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
           +LAIA+ L+ + PG  IRI+KNLR+CG+CH A  LISK+++REII RDR+RFHHF+ G C
Sbjct: 527 RLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQGGAC 586

Query: 702 SCNDYW 707
           SC DYW
Sbjct: 587 SCKDYW 592



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 118/391 (30%), Positives = 209/391 (53%), Gaps = 15/391 (3%)

Query: 47  KQVHSQIIKTGLHNTQFALSK--LIEICAVSPFGDLSYALLVFETI--REP-NQVIWNNI 101
           KQ+H++ ++ G+  +   L+K  L  + A+     L YA+ V   +    P +    N +
Sbjct: 32  KQIHARALRAGVPTSHPLLAKHLLFHLAALRA-PPLRYAVAVLSRLLPHGPLDPFPLNTV 90

Query: 102 IRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGL 161
           +R  + S  P VA++ + R +    +P+T+T+P ++++CA++ A+ EG+ +HA   K G 
Sbjct: 91  LRIAAGSPRPRVALELHRRRLA---LPDTHTYPPLIQACARLLALREGECLHAEAAKNGF 147

Query: 162 ESDPFVHTSLINMYAQNGELESARLVFNKSSL--RDAVSYTALITGYASRGYLDDARQLF 219
            +  FV  SL+++Y   G  ESA  VF++  +  R+ VS+ +++  +A+ G  ++   +F
Sbjct: 148 VTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVF 207

Query: 220 DEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYS 279
            EM     +F P+  T+V+VL+ACA  G+L LG  V   +E  GL  N HV+NALID+Y+
Sbjct: 208 WEM--LGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYA 265

Query: 280 KCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
           KCG +  AR +FE +   R V+SW  +I G       KEAL LF  M +  + P ++T +
Sbjct: 266 KCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMV 325

Query: 339 SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
            VL AC++ G +D G      + +++     +     ++D+  + G ++ A      M  
Sbjct: 326 GVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPL 385

Query: 399 KTLA-SWNAMISGLAMHGKADKALSLFSRMI 428
           +  A  W  ++   AMH K +     + R++
Sbjct: 386 EPNAVVWRTLLGSCAMHKKLELGKVAWERLV 416



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 143/278 (51%), Gaps = 8/278 (2%)

Query: 36  LLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           L+  C  +  +++   +H++  K G     F  + L+ +       + ++ +     +R 
Sbjct: 122 LIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRG 181

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            N V WN+++   + +  P   +  +  M+   F P+ +T   +L +CA+  A++ G+++
Sbjct: 182 RNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRV 241

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL-RDAVSYTALITGYASRGY 211
           H +V K+GL  +  V  +LI++YA+ G +  AR +F +  L R  VS+T+LI G A+ G+
Sbjct: 242 HVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGF 301

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHV 270
             +A +LF  M    E  VP E T+V VL AC+H G ++ G  +   + E +G+   +  
Sbjct: 302 GKEALELFSLM--EREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEH 359

Query: 271 TNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIG 307
              ++D+  + G + +A D   ++  + + + W  ++G
Sbjct: 360 LGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLG 397


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/503 (44%), Positives = 334/503 (66%), Gaps = 13/503 (2%)

Query: 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVT--VLSACAHMGSLELGNWVCSLIEGHGL 264
           A+ G +DD+R++F++MP   E+ V + + ++T  V S      ++EL    C +I     
Sbjct: 6   AADGSVDDSRKVFEQMP---EHNVMSWTAIITAYVQSGECDKEAIEL---FCKMISA--- 56

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
            S   V N+LI MY++ G +  AR  F+ + +++++S+N ++ GY      +EA +LF +
Sbjct: 57  -SVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNE 115

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           +  + I  +  TF S+L   A +GA+  G+ IH  + K   K +N  +  +LI MY++CG
Sbjct: 116 IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYK-SNQCICNALISMYSRCG 174

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
           NI+AA QVF+ M  + + SW +MI+G A HG A +AL +F +M+  G +P++IT+V VLS
Sbjct: 175 NIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLS 234

Query: 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504
           AC+H G++  G+++FN+M +++ I P+++HY CMVDLLGR+GL  EA   + +M +  DA
Sbjct: 235 ACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADA 294

Query: 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564
            +W +LLGACRVHG  ELG   A+ +LE EP++P AY+LLSN++A AG+W DV  IR  +
Sbjct: 295 LVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSM 354

Query: 565 NDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVL 624
            ++ + K  GCS IEV + VH F VG+  HPQ+  IY+ LD++ + +++ G++PDT  VL
Sbjct: 355 KERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVL 414

Query: 625 YDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNRE 684
           +D++EE KE  L  HSEK+A+A+GLIST     IRI KNLRVCG+CH+A K IS    RE
Sbjct: 415 HDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGRE 474

Query: 685 IIARDRNRFHHFKDGNCSCNDYW 707
           I+ RD NRFHH K+G CSCNDYW
Sbjct: 475 IVVRDSNRFHHIKNGVCSCNDYW 497



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 144/271 (53%), Gaps = 5/271 (1%)

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V  SLI+MYA++G +E AR  F+    ++ VSY A++ GYA     ++A  LF+E  I +
Sbjct: 61  VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNE--IAD 118

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
                +  T  ++LS  A +G++  G  +   +   G  SN  + NALI MYS+CG++  
Sbjct: 119 TGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEA 178

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
           A  +F  +E R+VISW  MI G+        AL +F +ML++  +PN++T+++VL AC++
Sbjct: 179 AFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSH 238

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA-SWN 405
           +G +  G+     + K H  +  +  +  ++D+  + G +  A +  + M     A  W 
Sbjct: 239 VGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWR 298

Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
            ++    +HG  +      + MI E  +PDD
Sbjct: 299 TLLGACRVHGNTELGRHA-AEMILEQ-EPDD 327



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 127/233 (54%), Gaps = 4/233 (1%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G +  A   F+ + E N V +N I+ G++ +     A   +  +  +G   + +TF  +L
Sbjct: 73  GRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLL 132

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
              A I A+ +G+QIH  +LK G +S+  +  +LI+MY++ G +E+A  VFN+   R+ +
Sbjct: 133 SGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVI 192

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN-WVC 256
           S+T++ITG+A  G+   A ++F +M   E    PNE T V VLSAC+H+G +  G     
Sbjct: 193 SWTSMITGFAKHGFATRALEMFHKML--ETGTKPNEITYVAVLSACSHVGMISEGQKHFN 250

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGG 308
           S+ + HG+   +     ++D+  + G LV+A +   S+    D + W  ++G 
Sbjct: 251 SMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGA 303



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 112/262 (42%), Gaps = 54/262 (20%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +Q+H +++K G  + Q   + LI +   S  G++  A  VF  + + N + W ++I G +
Sbjct: 145 EQIHGRLLKGGYKSNQCICNALISM--YSRCGNIEAAFQVFNEMEDRNVISWTSMITGFA 202

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
                  A++ + +M+ +G  PN  T+  +L +C+ +  ISEG++               
Sbjct: 203 KHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQK--------------- 247

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
                 +MY ++G +                 Y  ++      G L +A +  + MP+  
Sbjct: 248 ---HFNSMYKEHGIVPRME------------HYACMVDLLGRSGLLVEAMEFINSMPLMA 292

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLI--------EGHGLGSNLHVTNALIDMY 278
           +  V       T+L AC   G+ ELG     +I          + L SNLH +       
Sbjct: 293 DALVWR-----TLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAG----- 342

Query: 279 SKCGDLVKARDLFESIEKRDVI 300
            +  D+VK R   +S+++R++I
Sbjct: 343 -QWKDVVKIR---KSMKERNLI 360


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/589 (38%), Positives = 351/589 (59%), Gaps = 15/589 (2%)

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P   TF  ++ SC + +++S+G  +H  ++  GL+ DP++ T LINMY   G ++ A  V
Sbjct: 72  PTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKV 131

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV---PNESTVVTVLSACA 244
           F+++  +    + A+    A     +D   L+ +M     N++    N  T   VL AC 
Sbjct: 132 FDETREKTIFVWNAIFRALAMASRGEDLLVLYGQM-----NWIGIPSNRFTYTYVLKACV 186

Query: 245 ----HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVI 300
                +  L  G  + + I  HG   ++HV   L+D+Y++ G +  A  +F ++  ++++
Sbjct: 187 VSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIV 246

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQML--QSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
           SW+ MI  Y       +AL LF+ M+    +  PN +T +SVL ACA L AL+ GK +HA
Sbjct: 247 SWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHA 306

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKAD 418
           Y+ +     + + +  +LI MY +CG I   ++VFD M  + + SWN++IS   MHG   
Sbjct: 307 YVLRRGLD-STLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGK 365

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478
           KA+ +F  MI  G+ P  ITF+ VL AC+HAGL++  +  F +M+  Y+I P+++HY CM
Sbjct: 366 KAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYACM 425

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
           VD+LGRA   DEA  L++ M+ KP   +W SLLG+CR+H  +EL E  +  L ELEP+N 
Sbjct: 426 VDILGRANRLDEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVELAERASAMLFELEPKNA 485

Query: 539 GAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSK 598
           G YVLLS++YA +  W+DV  +R +L  +G++K+P CS IEV   ++  +  ++ +PQ +
Sbjct: 486 GNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQKIPSCSWIEVKRKIYSLVSIEEYNPQIE 545

Query: 599 HIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTI 658
            +   L  +   ++  G+VP T+ V YD+DEE KE  +  HS KLA+A+GLI+T  G  I
Sbjct: 546 ELCAFLITLLTEIKNQGYVPQTNVVTYDLDEEEKERIVLGHSGKLAVAFGLINTSKGEII 605

Query: 659 RIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           RI  NLR+C +CH+  K +SK  NREI+ RD NRFH FKDG CSC DYW
Sbjct: 606 RISNNLRLCEDCHAFMKFVSKFTNREILLRDVNRFHCFKDGVCSCGDYW 654



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 200/377 (53%), Gaps = 7/377 (1%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           VH +++ +GL    +  +KLI +      G + +A  VF+  RE    +WN I R  +++
Sbjct: 96  VHHRLVGSGLDQDPYLATKLINM--YCDLGSVDHACKVFDETREKTIFVWNAIFRALAMA 153

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCA----KISAISEGKQIHAHVLKLGLESD 164
           S     +  Y +M   G   N +T+ ++LK+C      I  + +GK+IHAH+L+ G E  
Sbjct: 154 SRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHGYEGH 213

Query: 165 PFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPI 224
             V T+L+++YA+ G +  A  VF     ++ VS++A+I  YA       A +LF  M +
Sbjct: 214 VHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMML 273

Query: 225 REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
              + VPN  T+V+VL ACA + +LE G  V + +   GL S L V N LI MY +CG++
Sbjct: 274 EACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITMYGRCGEI 333

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
              + +F+ ++KRDVISWN +I  Y      K+A+ +F  M+   + P+ +TF++VL AC
Sbjct: 334 STGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCAC 393

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS- 403
           ++ G ++  K +   +   ++    +  +  ++D+  +   +  A ++   M +K   + 
Sbjct: 394 SHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNMDFKPGPTV 453

Query: 404 WNAMISGLAMHGKADKA 420
           W +++    +H   + A
Sbjct: 454 WGSLLGSCRIHCNVELA 470



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 156/293 (53%), Gaps = 9/293 (3%)

Query: 19  PSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFG 78
           PS+   Y  +     ++ LS C  ++  K++H+ I++ G       ++ L+++ A   FG
Sbjct: 172 PSNRFTYTYVLKACVVSELSICP-LRKGKEIHAHILRHGYEGHVHVMTTLLDVYA--RFG 228

Query: 79  DLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGF--VPNTYTFPFI 136
            +SYA  VF  + + N V W+ +I  ++ +  P+ A++ +  M+L     VPN  T   +
Sbjct: 229 YVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSV 288

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L++CA ++A+  GK +HA+VL+ GL+S   V  +LI MY + GE+ + + VF+    RD 
Sbjct: 289 LQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDV 348

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           +S+ +LI+ Y   G    A Q+F+ M  R     P+  T +TVL AC+H G +E    + 
Sbjct: 349 ISWNSLISIYGMHGLGKKAIQIFENMINR--GVSPSYITFITVLCACSHAGLVEEAKILF 406

Query: 257 -SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIG 307
            S++  + +   +     ++D+  +   L +A +L ++++ K     W  ++G
Sbjct: 407 ESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNMDFKPGPTVWGSLLG 459


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/603 (38%), Positives = 361/603 (59%), Gaps = 17/603 (2%)

Query: 115 IKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINM 174
           +K  +R++     P+  T+  ++  C   S++S+G ++H H+L  G + DPF+ T LI M
Sbjct: 62  LKQALRVLSQESSPSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGM 121

Query: 175 YAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNES 234
           Y+  G ++ AR VF+K+  R    + AL       G+ ++   L+ +M     N +  ES
Sbjct: 122 YSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKM-----NRIGVES 176

Query: 235 ---TVVTVLSACAH----MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA 287
              T   VL AC         L  G  + + +   G  S++++   L+DMY++ G +  A
Sbjct: 177 DRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYA 236

Query: 288 RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE--PNDVTFLSVLPACA 345
             +F  +  R+V+SW+ MI  Y       EAL  FR+M+    +  PN VT +SVL ACA
Sbjct: 237 SYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACA 296

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNV-SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
            L AL+ G+ IH YI +  + L+++  + ++L+ MY +CG +   ++VFD M  + + SW
Sbjct: 297 SLAALEQGRLIHGYILR--RGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSW 354

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
           N++IS   +HG   KA+ +F  M+  G  P  +TFV VL AC+H GL++ G++ F +M +
Sbjct: 355 NSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWR 414

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGE 524
           D+ I P+++HY CMVDLLGRA   DEA  +++ M  +P   +W SLLG+CR+HG +EL E
Sbjct: 415 DHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAE 474

Query: 525 SVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVV 584
             ++ L  LEP+N G YVLL+++YA A  WD+V  ++  L  +G++K+PG   +EV   +
Sbjct: 475 RASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKM 534

Query: 585 HEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLA 644
           + F+  D+ +P  + I+  L ++   +++ G++P T  VLY+++ E KE  +  HSEKLA
Sbjct: 535 YSFVSMDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLA 594

Query: 645 IAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCN 704
           +A+GLI+T  G  IRI KNLR+C +CH  TK ISK   +EI+ RD NRFH FK+G CSC 
Sbjct: 595 LAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCG 654

Query: 705 DYW 707
           DYW
Sbjct: 655 DYW 657



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 138/466 (29%), Positives = 237/466 (50%), Gaps = 27/466 (5%)

Query: 30  NQPSLALLSKC----TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALL 85
           +Q +  LL  C    +++ +  +VH  I+  G     F  +KLI +   S  G + YA  
Sbjct: 76  SQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGM--YSDLGSVDYARK 133

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145
           VF+  R+    +WN + R  +L+      +  Y +M   G   + +T+ ++LK+C     
Sbjct: 134 VFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASEC 193

Query: 146 ----ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTA 201
               +++GK+IHAH+ + G  S  ++ T+L++MYA+ G ++ A  VFN   +R+ VS++A
Sbjct: 194 TADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSA 253

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
           +I  YA  G   +A + F EM    ++  PN  T+V+VL ACA + +LE G  +   I  
Sbjct: 254 MIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILR 313

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALML 321
            GL S L V +AL+ MY +CG L   + +F+ +  RDV+SWN +I  Y      ++A+ +
Sbjct: 314 RGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQI 373

Query: 322 FRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381
           F +ML +   P  VTF+SVL AC++ G ++ GK +   + ++H     V  +  ++D+  
Sbjct: 374 FEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLG 433

Query: 382 KCGNI-KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFV 440
           +   + +AA+ V D         W +++    +HG  + A     R+    L+P +    
Sbjct: 434 RANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLF--ALEPKN---- 487

Query: 441 GVLSACNHAGLLDIGRQYFNAMIQD--YKISPKLQHYGCMVDLLGR 484
               A N+  L DI   Y  A + D   ++   L+H G +  L GR
Sbjct: 488 ----AGNYVLLADI---YAEAQMWDEVKRVKKLLEHRG-LQKLPGR 525


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 249/679 (36%), Positives = 382/679 (56%), Gaps = 10/679 (1%)

Query: 34  LALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           + LL  C+   N+     +H   +K GL +     + LI++   S  G LS A ++F  I
Sbjct: 317 VTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDM--YSKCGCLSEAAILFRKI 374

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV--PNTYTFPFILKSCAKISAISE 148
              + V WN++I  +S             +M +   +   N  T   +L +C + S +  
Sbjct: 375 ENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLS 434

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
            + +H + L+   +    ++ + I  YA+ G L  A  VF   + +   S+ A+I G+A 
Sbjct: 435 LRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQ 494

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
            G    A   + EM       +P++ ++V++L AC  +G L+ G  +   +  +GL  N 
Sbjct: 495 NGDPIKALDFYFEMT--RLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNS 552

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
            V  +L+ +Y  C      R  FE++  ++ + WN M+ GY+      EAL LFRQML  
Sbjct: 553 FVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSD 612

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            +EP+++   S+L AC+ L AL LGK +H +  KN    +N  +  SL+DMYAK G +  
Sbjct: 613 GLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNF-VACSLMDMYAKSGFLGH 671

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           ++++F+ +  K +ASWN MI+G  +HG+ +KA+ LF  M     QPD  TF+GVL AC H
Sbjct: 672 SQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCH 731

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
           AGL+  G  Y   M   YK+ P+L+HY C++D+LGRAG  +EA   +  M  +PDA IW+
Sbjct: 732 AGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWS 791

Query: 509 SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568
           SLL +   +  LE+GE  A+ LL LE     +Y+LLSN+YA AG+WD V  +R ++ D  
Sbjct: 792 SLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLS 851

Query: 569 MKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
           ++K  GCS IE+   V+ F+ G+  +P S  I +M + ++  + + G+ PD S VL++++
Sbjct: 852 LQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELE 911

Query: 629 EEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIAR 688
           E  K   L  HSEK+AI +G ++TK GTT+RI KNLR+C +CH+A K ISK   REI+ R
Sbjct: 912 EVEKRKILKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIR 971

Query: 689 DRNRFHHFKDGNCSCNDYW 707
           D  RFHHFK G CSC DYW
Sbjct: 972 DNKRFHHFKKGICSCGDYW 990



 Score =  245 bits (626), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 187/642 (29%), Positives = 313/642 (48%), Gaps = 63/642 (9%)

Query: 21  SDPPYKLLQNQPSLA-LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGD 79
           ++  Y L Q + ++  LL KC   +N+ ++  ++ +    ++QF+   ++    ++ +  
Sbjct: 97  NNAGYDLAQRKEAMGMLLQKCGQYKNV-EIGRKLDEMLCVSSQFSGDFVLNTRLITMYSI 155

Query: 80  LSYAL---LVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI-LSGFVPNTYTFPF 135
             Y L   LVF+ +   N   WN ++ G+  +     AI  ++ +I ++ F P+ +TFP 
Sbjct: 156 CGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPC 215

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           ++K+C     I  GK +H   +K+GL  D FV  ++I +Y + G L+ A  +F+K   ++
Sbjct: 216 LIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQN 275

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
            +S+ +LI G++  G+  +A + F  +    +  +P+ +T+VT+L  C+  G++++G  +
Sbjct: 276 LISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVI 335

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
             +    GL   L V NALIDMYSKCG L +A  LF  IE + V+SWN MIG Y+     
Sbjct: 336 HGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFV 395

Query: 316 KEALMLFRQMLQSN--IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
            E   L R+M      +E N+VT L++LPAC     L   + +H Y  ++  +   + + 
Sbjct: 396 FETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKEL-IN 454

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
            + I  YAKCG++  AE VF GM  K+++SWNA+I G A +G   KAL  +  M   G+ 
Sbjct: 455 NAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGIL 514

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQD-------YKISPKLQHYGCMVDLLGRA- 485
           PDD + V +L AC   GLL  G++    ++++         +S    ++ C     GR  
Sbjct: 515 PDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTY 574

Query: 486 ----------------------GLFDEAEALLKTM---EMKPDAAIWTSLLGACRVHGRL 520
                                  L +EA +L + M    ++PD     S+LGAC     L
Sbjct: 575 FETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSAL 634

Query: 521 ELGESVAKHLLELEP---ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577
            LG+ V  H   L+    E+      L +MYA +G       I  RLN K          
Sbjct: 635 GLGKEV--HCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGK---------- 682

Query: 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPD 619
            EV S  +  + G  VH Q     E+ ++    +++S   PD
Sbjct: 683 -EVAS-WNVMITGFGVHGQGNKAVELFED----MKRSDKQPD 718


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/564 (42%), Positives = 350/564 (62%), Gaps = 7/564 (1%)

Query: 149 GKQIHAHVLKLGL-ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA 207
           G+Q+H   L+ GL  SD +  ++L++MY        AR  F++    + V  TA+ +G  
Sbjct: 107 GRQLHLLALRSGLFPSDAYCASALLHMYHHCFRPLDARRAFDEIPTPNPVIVTAMASGCM 166

Query: 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
               +     +F  M       V +E+  +  LSA A +    +   + +L+   GL   
Sbjct: 167 RNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSASARVPDRGITGGIHALVSKIGLDGQ 226

Query: 268 LHVTNALIDMYSKCG--DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
             V N +ID Y+K G  DL  AR LF+ ++ RDV+SWN MI  Y       EAL L+ +M
Sbjct: 227 TGVANTIIDAYAKGGGHDLGAARKLFDMMD-RDVVSWNTMIALYAQNGLSTEALGLYSKM 285

Query: 326 L--QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383
           L    ++  N VT  +VL ACA+ GA+  GK IH  + +   + +NV + TS++DMY+KC
Sbjct: 286 LIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLE-DNVYVGTSVVDMYSKC 344

Query: 384 GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
           G ++ A + F  +  K + SW+AMI+G  MHG   +AL +F+ M   GL+P+ ITF+ VL
Sbjct: 345 GKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVL 404

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
           +AC+HAGLL  GR ++N M  ++ I P ++HYGCMVDLLGRAG  DEA  L+K M++KPD
Sbjct: 405 AACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPD 464

Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563
           AA+W +LL ACR++  +EL +  A+ L EL+  N G YVLLSN+YA AG W +V  +R  
Sbjct: 465 AALWGALLSACRIYKNVELAKICAERLFELDATNSGYYVLLSNIYAEAGMWKEVERMRVL 524

Query: 564 LNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEV 623
           +  +G++K PG SS+E+    H F VGDK HPQ K IY  L+++   +  +G+VP+T  V
Sbjct: 525 VKTRGIEKPPGYSSVELKGKTHLFYVGDKSHPQYKEIYAYLEKLLERIHDAGYVPNTGSV 584

Query: 624 LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNR 683
           L+D+D E +E  L  HSEKLA+A+ L+++  G+ I ++KNLRVC +CH+A K+I+K+  R
Sbjct: 585 LHDLDVEERESMLRIHSEKLAVAFALMNSVQGSVIHVIKNLRVCTDCHAAIKIITKLTGR 644

Query: 684 EIIARDRNRFHHFKDGNCSCNDYW 707
           EII RD  RFHHFKDG CSC DYW
Sbjct: 645 EIIIRDLKRFHHFKDGLCSCGDYW 668



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 89/175 (50%), Gaps = 7/175 (4%)

Query: 35  ALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           A+L  C +   +Q  K++H+Q+++ GL +  +  + ++++   S  G +  A   F+ I+
Sbjct: 301 AVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDM--YSKCGKVEMAWKAFQKIK 358

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
             N + W+ +I G+ +      A+  +  M  SG  PN  TF  +L +C+    +SEG+ 
Sbjct: 359 GKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLAACSHAGLLSEGRY 418

Query: 152 IHAHV-LKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-DAVSYTALIT 204
            +  +  + G+E     +  ++++  + G L+ A  +  +  ++ DA  + AL++
Sbjct: 419 WYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAALWGALLS 473


>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Glycine max]
          Length = 630

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 257/615 (41%), Positives = 372/615 (60%), Gaps = 11/615 (1%)

Query: 98  WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
           WNN +R  S       A+  Y  M+ S F PNT+TFPF+LKSCA +S      Q+HAHV+
Sbjct: 22  WNNQLRQLSKQRQYREALTLYRHMLRSSFFPNTFTFPFLLKSCAFLSLPLAASQLHAHVI 81

Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ 217
           + G + DP+  +SLIN YA+      AR VF++      + Y A+I+GY+       A  
Sbjct: 82  RTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMP-NPTICYNAMISGYSFNSKPLHAVC 140

Query: 218 LFDEMPIREENFVP-----NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           LF +M   EE+ +      N  T+++++S C+    L +G  +       G  ++L V N
Sbjct: 141 LFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFVTDLAVAN 200

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           +L+ MY KCG++  AR +F+ +  RD+I+WN MI GY      +  L ++ +M  S +  
Sbjct: 201 SLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEMKLSGVSA 260

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           + VT L V+ ACA LGA  +G+ +   I++     N   L  +L++MYA+CGN+  A +V
Sbjct: 261 DAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPF-LRNALVNMYARCGNLTRAREV 319

Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
           FD  G K++ SW A+I G  +HG  + AL LF  M+   ++PD   FV VLSAC+HAGL 
Sbjct: 320 FDRSGEKSVVSWTAIIGGYGIHGHGEVALELFDEMVESAVRPDKTVFVSVLSACSHAGLT 379

Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
           D G +YF  M + Y + P  +HY C+VDLLGRAG  +EA  L+K+M++KPD A+W +LLG
Sbjct: 380 DRGLEYFKEMERKYGLQPGPEHYSCVVDLLGRAGRLEEAVNLIKSMKVKPDGAVWGALLG 439

Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
           AC++H   E+ E   +H++ELEP N G YVLLSN+Y  A   + V+ +R  + ++ ++K 
Sbjct: 440 ACKIHKNAEIAELAFQHVVELEPTNIGYYVLLSNIYTDANNLEGVSRVRVMMRERKLRKD 499

Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
           PG S +E    ++ F  GD  HPQ+K IY MLDE+++L+++   V   +E      EE  
Sbjct: 500 PGYSYVEYKGKMNLFYSGDLSHPQTKQIYRMLDELESLVKE---VHPPNEKCQGRSEELL 556

Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
            G    HSEKLAIA+ L++TK GT I ++KNLRVC +CH   KL+SKI NR+ I RD  R
Sbjct: 557 IGT-GVHSEKLAIAFALLNTKSGTEITVMKNLRVCVDCHLFIKLVSKIVNRQFIVRDATR 615

Query: 693 FHHFKDGNCSCNDYW 707
           FHHF+DG CSC DYW
Sbjct: 616 FHHFRDGICSCKDYW 630



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/405 (28%), Positives = 213/405 (52%), Gaps = 15/405 (3%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSL 107
           Q+H+ +I+TG     +  S LI   A        +A  VF+ +  P  + +N +I G+S 
Sbjct: 75  QLHAHVIRTGSQPDPYTRSSLINTYAKCSLHH--HARKVFDEMPNPT-ICYNAMISGYSF 131

Query: 108 SSSPVVAIKFYVRM-------ILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG 160
           +S P+ A+  + +M       +      N  T   ++  C+  + ++ G  +H   ++ G
Sbjct: 132 NSKPLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFG 191

Query: 161 LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD 220
             +D  V  SL+ MY + GE+E AR VF++  +RD +++ A+I+GYA  G+     +++ 
Sbjct: 192 FVTDLAVANSLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYS 251

Query: 221 EMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK 280
           EM +       +  T++ V+SACA++G+  +G  V   IE  G G N  + NAL++MY++
Sbjct: 252 EMKL--SGVSADAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFLRNALVNMYAR 309

Query: 281 CGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSV 340
           CG+L +AR++F+   ++ V+SW  +IGGY      + AL LF +M++S + P+   F+SV
Sbjct: 310 CGNLTRAREVFDRSGEKSVVSWTAIIGGYGIHGHGEVALELFDEMVESAVRPDKTVFVSV 369

Query: 341 LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK- 399
           L AC++ G  D G      +++ +        ++ ++D+  + G ++ A  +   M  K 
Sbjct: 370 LSACSHAGLTDRGLEYFKEMERKYGLQPGPEHYSCVVDLLGRAGRLEEAVNLIKSMKVKP 429

Query: 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
             A W A++    +H  A+ A   F  ++   L+P +I +  +LS
Sbjct: 430 DGAVWGALLGACKIHKNAEIAELAFQHVV--ELEPTNIGYYVLLS 472



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 87/162 (53%), Gaps = 9/162 (5%)

Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
           +WN  +   +    Y+EAL L+R ML+S+  PN  TF  +L +CA+L        +HA++
Sbjct: 21  AWNNQLRQLSKQRQYREALTLYRHMLRSSFFPNTFTFPFLLKSCAFLSLPLAASQLHAHV 80

Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
            +   + +  +  +SLI+ YAKC     A +VFD M   T+  +NAMISG + + K   A
Sbjct: 81  IRTGSQPDPYT-RSSLINTYAKCSLHHHARKVFDEMPNPTIC-YNAMISGYSFNSKPLHA 138

Query: 421 LSLFSRMIGE---GLQPD----DITFVGVLSACNHAGLLDIG 455
           + LF +M  E   GL  D     +T + ++S C+ A  L IG
Sbjct: 139 VCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIG 180


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/666 (35%), Positives = 383/666 (57%), Gaps = 12/666 (1%)

Query: 46  IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           I Q+H+ +IK G        + L++  A      L  A  +F+ +   + V +N+++ G+
Sbjct: 159 IVQIHTHVIKLGYEYNLMVCNSLVD--AYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGY 216

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
           S       AI+ ++ +  SG  P+ +TF  +L +   +     G+Q+H  VLK     + 
Sbjct: 217 SNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNV 276

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           FV  +L++ Y+++ +++    +F +    D +SY  +IT YA  G   ++  LF ++   
Sbjct: 277 FVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFT 336

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWV-CSLIEGHGLGSNL--HVTNALIDMYSKCG 282
              F   +    T+LS      +L +G  + C  I    +G+N    V NAL+DMY+KC 
Sbjct: 337 R--FDRRQFPFATLLSIATSSLNLRMGRQIHCQAIT---VGANFESRVENALVDMYAKCN 391

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
              +A+ +F++I  +  + W  MI  Y     ++E + +F  M ++ +  +  TF S+L 
Sbjct: 392 GDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILR 451

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           ACA L ++ LG+ +H+ + ++   ++NV   ++L+D YAKCG +  A + F  M  +   
Sbjct: 452 ACANLASISLGRQLHSLLIRS-GFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSV 510

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           SWNA+IS  A +G  D  L+ F +MI  G +PD ++F+ VLSAC+H G ++    +FN+M
Sbjct: 511 SWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSM 570

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
            Q Y+++PK +HY  MVD+L R G FDEAE L+  M  +P   +W+S+L +CR+H   EL
Sbjct: 571 TQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHEL 630

Query: 523 GESVAKHLLELEP-ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
            +  A  L  +E   +   Y+ +SN+YA AG+WD+VA ++  + D+G++KVP  S +E+ 
Sbjct: 631 AKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIK 690

Query: 582 SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
              H F   DK HP+ K I   ++ +   +EK G+ PDT+  L+D+DE  K  +L +HSE
Sbjct: 691 HQTHVFSANDKSHPEMKKILRKINALSKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSE 750

Query: 642 KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
           + AIA+ L++T  G+ I ++KNLR C +CH+A K+IS+I  REII RD +RFHHFKDG C
Sbjct: 751 RFAIAFALMNTPDGSPIVVMKNLRACTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVC 810

Query: 702 SCNDYW 707
           SC DYW
Sbjct: 811 SCGDYW 816



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 143/527 (27%), Positives = 239/527 (45%), Gaps = 46/527 (8%)

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
           FG LS A  +F+ + E   V W  +I G+  S+    A + Y  M   G  P+  T   +
Sbjct: 87  FGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTL 146

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L    ++   +   QIH HV+KLG E +  V  SL++ Y +   L  A  +F     +D 
Sbjct: 147 LSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDT 206

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           V++ +L+TGY++ G  ++A +LF E+        P++ T   +LSA   +   + G  V 
Sbjct: 207 VTFNSLMTGYSNEGLNEEAIELFLEL--HNSGIKPSDFTFAALLSAAVGLDDTKFGQQVH 264

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
             +       N+ V NAL+D YSK   + +   LF  + + D IS+NV+I  Y     +K
Sbjct: 265 GFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFK 324

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY---IDKNHQKLNNVSLW 373
           E+  LFR++  +  +     F ++L        L +G+ IH     +  N +      + 
Sbjct: 325 ESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFES----RVE 380

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
            +L+DMYAKC   K A+++FD +  K+   W AMIS     GK ++ +++FS M   G+ 
Sbjct: 381 NALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVP 440

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQD------YKISPKLQHY---GCMVDLLGR 484
            D  TF  +L AC +   + +GRQ  + +I+       Y  S  L  Y   GCM D +  
Sbjct: 441 ADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKS 500

Query: 485 AGLFDEAEAL------------------LKTMEM------KPDAAIWTSLLGACRVHGRL 520
            G   E  ++                  L + +       KPD+  + S+L AC   G +
Sbjct: 501 FGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFV 560

Query: 521 ELG---ESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564
           E      +    + E+ P+    Y  + ++    GR+D+   + T +
Sbjct: 561 EEALWHFNSMTQIYEVTPKRE-HYTSMVDVLCRNGRFDEAEKLMTEM 606



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 186/409 (45%), Gaps = 42/409 (10%)

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           I AH++K G   +       +N + + G+L  A  VF++   ++ +S   +I+G+   G 
Sbjct: 30  IDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGK 89

Query: 212 LDDARQLFDEM-----------------------------PIREENFVPNESTVVTVLSA 242
           L  AR+LFD M                              +R     P+  T+VT+LS 
Sbjct: 90  LSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSG 149

Query: 243 CAHMGSLELGNWVCSLIEGH----GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD 298
               G LE  N +   I  H    G   NL V N+L+D Y K   L  A  LF+ +  +D
Sbjct: 150 ---FGELETKNVIVQ-IHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKD 205

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
            +++N ++ GY++    +EA+ LF ++  S I+P+D TF ++L A   L     G+ +H 
Sbjct: 206 TVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHG 265

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKAD 418
           ++ K +  + NV +  +L+D Y+K   +    ++F  M      S+N +I+  A +G+  
Sbjct: 266 FVLKTN-FVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFK 324

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ-YFNAMIQDYKISPKLQHYGC 477
           ++  LF ++           F  +LS    +  L +GRQ +  A+        ++++   
Sbjct: 325 ESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVEN--A 382

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
           +VD+  +     EA+ +   +  K     WT+++ A    G+ E G +V
Sbjct: 383 LVDMYAKCNGDKEAQKIFDNIACKSTVP-WTAMISAYVQKGKHEEGINV 430


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/529 (42%), Positives = 333/529 (62%), Gaps = 4/529 (0%)

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENF--VPNESTVVT 238
           L SAR +F++   RD  S++A+++ +A  G    A  ++  M +RE     V NE T  +
Sbjct: 109 LASARALFDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRRM-LREPGSAGVDNEFTASS 167

Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD 298
            L+A         G  +   +   G+ ++  V +AL DMY+KCG +  AR +F+ +  RD
Sbjct: 168 ALAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRD 227

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
           V+SW  M+  Y       E   LF +ML+S I+PN+ T+  VL ACA   +  LGK +H 
Sbjct: 228 VVSWTAMVERYFDARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHG 287

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKAD 418
            + K+    ++    ++L+ MY+K G++  A +VF GM    L SW AMISG A +G+ D
Sbjct: 288 RMTKSRAG-DSCFAESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPD 346

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478
           +AL  F  ++  G +PD +TFVGVLSAC HAGL+D G   F+++  +Y I     HY C+
Sbjct: 347 EALRYFDMLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACV 406

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
           +DLL R+GLF+ AE ++ TM +KP+  +W SLLG CR+H  + L    A+ L E+EPENP
Sbjct: 407 IDLLSRSGLFERAEEMINTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPENP 466

Query: 539 GAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSK 598
             YV L+N+YA  G +D+V   R  +  KG+ K+P  S IEVG+ +H FLVGDK+HPQ++
Sbjct: 467 ATYVTLANIYASVGLFDEVENTRRIMELKGITKMPASSWIEVGTRMHVFLVGDKLHPQAE 526

Query: 599 HIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTI 658
            +Y +L ++   + + G+V DT  VL+D+++E K+  + +HSE+LA+A+G+I+T  G  I
Sbjct: 527 QVYALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGAPI 586

Query: 659 RIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           ++ KNLR+CG+CH+  KLISKI  REII RD NRFHHFK+G+CSC DYW
Sbjct: 587 KVFKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 156/308 (50%), Gaps = 9/308 (2%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           +++H  +++ G+       S L ++ A    G +  A  VF+ +   + V W  ++  + 
Sbjct: 182 RELHCHVVRRGIDADAVVWSALADMYAKC--GRVDDARSVFDRMPVRDVVSWTAMVERYF 239

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
            +       + +VRM+ SG  PN +T+  +L++CA+ ++   GKQ+H  + K       F
Sbjct: 240 DARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCF 299

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
             ++L++MY++ G++ +A  VF      D VS+TA+I+GYA  G  D+A + FD M +R 
Sbjct: 300 AESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFD-MLLR- 357

Query: 227 ENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
               P+  T V VLSACAH G ++ G +   S+ + +G+         +ID+ S+ G   
Sbjct: 358 SGCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGLFE 417

Query: 286 KARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP-NDVTFLSVLPA 343
           +A ++  ++  K +   W  ++GG     + + A      + +  IEP N  T++++   
Sbjct: 418 RAEEMINTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFE--IEPENPATYVTLANI 475

Query: 344 CAYLGALD 351
            A +G  D
Sbjct: 476 YASVGLFD 483


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/545 (42%), Positives = 343/545 (62%), Gaps = 11/545 (2%)

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
           D   + +L++ +  +G+ + AR +F    +RD VS+  +++G +  G +++A+ +F  MP
Sbjct: 79  DAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMP 138

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
           +R      + + +V+  +    M + E   W  +  E      +  +  A++  Y   G+
Sbjct: 139 VRNS---VSWNAMVSGFACSRDMSAAE--EWFRNAPEK----GDAVLWTAMVSGYMDIGN 189

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-QSNIEPNDVTFLSVLP 342
           +VKA + FE++  R+++SWN ++ GY   S   +AL LFR M+ ++N++PN  T  SVL 
Sbjct: 190 VVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLL 249

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
            C+ L AL  GK IH +  K      N+++ TSL+ MY KCG++ +A ++F  M  + + 
Sbjct: 250 GCSNLSALGFGKQIHQWCMKLPLS-RNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVV 308

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           +WNAMISG A HG   +A++LF RM  EG++P+ ITFV VL+AC H GL D G + F  M
Sbjct: 309 AWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGM 368

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
            + Y I P++ HY CMVDLL RAG  + A  L+++M  +P  + + +LL ACRV+  LE 
Sbjct: 369 QELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEF 428

Query: 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582
            E  A  L+E +P++ GAYV L+N+YAGA +WDDV+ +R  + D  + K PG S IE+  
Sbjct: 429 AELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKG 488

Query: 583 VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEK 642
           V+HEF   D++HPQ   I+E L ++   ++  G+VPD   VL+D+DE  K   L  HSEK
Sbjct: 489 VMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEK 548

Query: 643 LAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCS 702
           LAI++GLIST PG T+RI KNLRVCG+CH+A K+ISKI +REII RD  RFHHF+ G+CS
Sbjct: 549 LAISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCS 608

Query: 703 CNDYW 707
           C DYW
Sbjct: 609 CGDYW 613



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 161/322 (50%), Gaps = 8/322 (2%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           GD   A  +F ++   + V WN ++ G S S +   A   ++ M     V N+ ++  ++
Sbjct: 94  GDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMP----VRNSVSWNAMV 149

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
              A    +S  ++   +  + G   D  + T++++ Y   G +  A   F    +R+ V
Sbjct: 150 SGFACSRDMSAAEEWFRNAPEKG---DAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLV 206

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           S+ A++ GY    + DDA +LF  M +RE N  PN ST+ +VL  C+++ +L  G  +  
Sbjct: 207 SWNAVVAGYVKNSHADDALRLFRTM-VREANVQPNASTLSSVLLGCSNLSALGFGKQIHQ 265

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
                 L  NL V  +L+ MY KCGDL  A  LF  +  RDV++WN MI GY    D KE
Sbjct: 266 WCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKE 325

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           A+ LF +M    +EPN +TF++VL AC + G  D G      + + +     V  ++ ++
Sbjct: 326 AINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMV 385

Query: 378 DMYAKCGNIKAAEQVFDGMGYK 399
           D+  + G ++ A  +   M ++
Sbjct: 386 DLLCRAGKLERAVDLIRSMPFE 407



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 121/282 (42%), Gaps = 33/282 (11%)

Query: 282 GDLVKARDLFESIEKRDVISWNVMIGGYTHT-SDYKEALMLFRQMLQSNIEPNDVTFLSV 340
           GDL  A + F S  ++   ++N ++ GY        +A  LF ++      P+ V++ ++
Sbjct: 31  GDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPT----PDAVSYNTL 86

Query: 341 LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT 400
           L      G  D  + + A +      + +V  W +++   +K G ++ A+ VF  M  + 
Sbjct: 87  LSCHFASGDADGARRLFASM-----PVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRN 141

Query: 401 LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR---- 456
             SWNAM+SG A       A   F     +G   D + +  ++S     G +DIG     
Sbjct: 142 SVSWNAMVSGFACSRDMSAAEEWFRNAPEKG---DAVLWTAMVS-----GYMDIGNVVKA 193

Query: 457 -QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM----EMKPDAAIWTSLL 511
            +YF AM     +S     +  +V    +    D+A  L +TM     ++P+A+  +S+L
Sbjct: 194 IEYFEAMPVRNLVS-----WNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVL 248

Query: 512 GACRVHGRLELGESVAKHLLELE-PENPGAYVLLSNMYAGAG 552
             C     L  G+ + +  ++L    N      L +MY   G
Sbjct: 249 LGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCG 290


>gi|358343602|ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|358344096|ref|XP_003636129.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355501824|gb|AES83027.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355502064|gb|AES83267.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 662

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 255/681 (37%), Positives = 389/681 (57%), Gaps = 32/681 (4%)

Query: 35  ALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIE---ICAVSPFGDLSYALLVFE 88
           +L+++CTN   +  +K +H+ I+K+G   + F   KLI+    C+V     ++ A  +F+
Sbjct: 6   SLIAQCTNKKSLTTLKSLHTHILKSGSLFSFFG-HKLIDGYIKCSV-----ITEARKLFD 59

Query: 89  TIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE 148
            +   + V WN++I  H        AI+ Y  M+  G +P+ YTF  I K+ +++    E
Sbjct: 60  EMPNRHIVTWNSMISSHVSRGKTKEAIELYSNMLFEGVLPDAYTFSAIFKAFSEMGVSRE 119

Query: 149 GKQIHAHVLKLGLE-SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA 207
           G++ H   + LG E SD FV T +++MYA+ G+++ AR VF++   +D V +TALI GY 
Sbjct: 120 GQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYN 179

Query: 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
             G   +A ++F++M        PNE T+ +VL +C ++G L  G  +  L+  +GL S 
Sbjct: 180 QHGLDGEALEVFEDMV--GSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKYGLESV 237

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
           +    +L+ MYSKC  +  +  +F S+     ++W   I G       + AL +FR+M++
Sbjct: 238 VASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEVALSMFREMMR 297

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
            +I PN  T  S+L AC+ L  L+ G+ IHA   K     N   +  +LI +Y KCGN++
Sbjct: 298 CSISPNHFTLSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKF-VDAALIHLYGKCGNVE 356

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
            A  VFD +    + S N MI   A +G   +AL LF R+   GL+P+ +TF+ +L ACN
Sbjct: 357 KARSVFDSLTELDIVSINTMIYAYAQNGFGHEALELFERLKKLGLEPNVVTFISILLACN 416

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
           +AGL++ G Q F+ +  ++ I     HY CM+DLLGRA  F+EA  L++  +  PD   W
Sbjct: 417 NAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEATMLIEEGK-NPDVIQW 475

Query: 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
            +LL AC++HG +E+ E   K +L+  P + G ++LL+N+YA AG+WD+V  +++   D 
Sbjct: 476 RTLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRDL 535

Query: 568 GMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
            +KK P  S +++   VH F+ GD  HP++  I EML E+   +   G+ PDT  VL D+
Sbjct: 536 RLKKTPAMSWVDIDREVHTFMAGDLSHPRAHEISEMLHELIEKVITLGYNPDTKFVLQDL 595

Query: 628 DEEWKEGALSHHSEKLAIAYGLIST-KPGTTIRIVKNLRVCGNCHSATKLISKIFNREII 686
           +EE K  AL +HSEKLAIA+ L  T    T IRI KNLRVCG+               II
Sbjct: 596 EEEKKISALYYHSEKLAIAFALWKTCGKNTAIRIFKNLRVCGD--------------YII 641

Query: 687 ARDRNRFHHFKDGNCSCNDYW 707
           ARD  RFHHFK G CSC DYW
Sbjct: 642 ARDAKRFHHFKGGICSCKDYW 662


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/685 (34%), Positives = 381/685 (55%), Gaps = 78/685 (11%)

Query: 26  KLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDL-SYAL 84
           ++L+ +    + S CT + + KQ+H+ I +  LH + + ++ L+      P   + +Y  
Sbjct: 7   RVLEWEAVRIIESHCTTLNHAKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPH 66

Query: 85  LVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS 144
           L+F  +  PN  +++ +IR ++ +     +I+ Y  M+ +   P ++TF  +    + + 
Sbjct: 67  LLFSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALF---SLLK 123

Query: 145 AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
             S G Q+H H    G  +D +V  ++I+MY +                           
Sbjct: 124 NPSLGSQLHLHAFLFGFVNDLYVGNTIIHMYVK--------------------------- 156

Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
                G LD AR++FDEMP R+         VVT               W          
Sbjct: 157 ----FGVLDCARKVFDEMPHRD---------VVT---------------WT--------- 179

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
                    LI  Y++ GD+  A +LF  +  +D+++W  M+ GY+  +  K+AL  FR+
Sbjct: 180 --------ELIVAYARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRK 231

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH-QKLNNVSLWTSLIDMYAKC 383
           M ++ +  +++T +  + ACA LG      WI    + +     +NV + ++LIDMY+KC
Sbjct: 232 MREAGVVTDEITLVGAISACAQLGVSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKC 291

Query: 384 GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
           GN++ A  VF GM    + S+++MI G A+HG+A  A+ LF  M+  G++P+ +TFVG+ 
Sbjct: 292 GNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLF 351

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
           +AC+HAG+++ G+Q F AM + Y +SP   HY CM DLLGRAG  ++A  L++TM M+P+
Sbjct: 352 TACSHAGMVEQGQQLFGAMKECYGVSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPN 411

Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563
             +W +LLGA  +HG  ++ E  ++ L ELEP+N G Y+LLS  YA A +WDDV+ +R  
Sbjct: 412 GGVWGALLGASHIHGNPDVAEIASRSLFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKL 471

Query: 564 LNDKGMKKVPGCSSIEV-GSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSE 622
           + +K ++K PGCS +E    ++HEF  GD  HP+   I + LD++   L+ +G+ P  + 
Sbjct: 472 MREKQLRKNPGCSWVEAKNGIIHEFFAGDVKHPEINEIKKALDDLLQRLKCTGYQPKLNS 531

Query: 623 VLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFN 682
           V YD+D+E K   L  HSEKLA+AYGL+ST  G+TI+I+KNLR+C +CH      SK+  
Sbjct: 532 VPYDIDDEGKRCLLVSHSEKLALAYGLLSTDAGSTIKIMKNLRICEDCHIVMCGASKLTG 591

Query: 683 REIIARDRNRFHHFKDGNCSCNDYW 707
           R+II RD  RFHHF +G CSCN++W
Sbjct: 592 RKIIVRDNMRFHHFLNGACSCNNFW 616


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/625 (37%), Positives = 368/625 (58%), Gaps = 34/625 (5%)

Query: 116 KFYVRMILSGFVPNTYT----FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSL 171
           K ++R     F+   +     F  +L++C  + ++S GKQ+H+ +   G  SD F+   L
Sbjct: 51  KGHIREAFESFLSEIWAEPRLFSNLLQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHL 110

Query: 172 INMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR------ 225
           +N+Y++ GEL++A  +F++   R+ +S   +I  Y   G L+ A+ LFDEMP R      
Sbjct: 111 LNLYSKFGELQAAVALFDRMPRRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWN 170

Query: 226 -----------------------EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262
                                  E +F+P+E ++ +VL  CAH+G+L  G  V + +   
Sbjct: 171 AMVTGLTKFEMNEEALLLFSRMNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKC 230

Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322
           G   NL V  +L  MY K G +     +   +    +++WN ++ G      ++  L  +
Sbjct: 231 GFECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQY 290

Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
             M  +   P+ +TF+SV+ +C+ L  L  GK IHA   K         + +SL+ MY++
Sbjct: 291 CMMKMAGFRPDKITFVSVISSCSELAILCQGKQIHAEAVKAGASSEVSVV-SSLVSMYSR 349

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
           CG ++ + + F     + +  W++MI+    HG+ ++A+ LF+ M  E L  ++ITF+ +
Sbjct: 350 CGCLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEAIKLFNEMEQENLPGNEITFLSL 409

Query: 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502
           L AC+H GL D G   F+ M++ Y +  +LQHY C+VDLLGR+G  +EAEA++++M +K 
Sbjct: 410 LYACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSMPVKA 469

Query: 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562
           DA IW +LL AC++H   E+   VA  +L ++P++  +YVLL+N+Y+ A RW +V+ +R 
Sbjct: 470 DAIIWKTLLSACKIHKNAEIARRVADEVLRIDPQDSASYVLLANIYSSANRWQNVSEVRR 529

Query: 563 RLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSE 622
            + DK +KK PG S +EV + VH+F +GD+ HP+   I + L+E+ + +++ G+VPDTS 
Sbjct: 530 AMKDKMVKKEPGISWVEVKNQVHQFHMGDECHPKHVEINQYLEELTSEIKRQGYVPDTSS 589

Query: 623 VLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFN 682
           VL+DMD E KE  L HHSEKLAIA+ L++T  G  IR++KNLRVC +CH A K IS+I  
Sbjct: 590 VLHDMDNEEKEQILRHHSEKLAIAFALMNTPEGVPIRVMKNLRVCSDCHVAIKYISEIKK 649

Query: 683 REIIARDRNRFHHFKDGNCSCNDYW 707
            EII RD +RFHHFK+G CSC DYW
Sbjct: 650 LEIIVRDSSRFHHFKNGTCSCGDYW 674



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/418 (27%), Positives = 203/418 (48%), Gaps = 35/418 (8%)

Query: 36  LLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEI--------CAVSPF------- 77
           LL  C  ++++   KQ+HS I  +G  + +F  + L+ +         AV+ F       
Sbjct: 75  LLQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQAAVALFDRMPRRN 134

Query: 78  --------------GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMIL 123
                         G+L  A  +F+ + + N   WN ++ G +       A+  + RM  
Sbjct: 135 IMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNE 194

Query: 124 SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELES 183
             F+P+ Y+   +L+ CA + A+  G+Q+HA+V+K G E +  V  SL +MY + G +  
Sbjct: 195 LSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHD 254

Query: 184 ARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC 243
              V N       V++  L++G A +GY +     +  M +    F P++ T V+V+S+C
Sbjct: 255 GERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKM--AGFRPDKITFVSVISSC 312

Query: 244 AHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN 303
           + +  L  G  + +     G  S + V ++L+ MYS+CG L  +   F   ++RDV+ W+
Sbjct: 313 SELAILCQGKQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWS 372

Query: 304 VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363
            MI  Y      +EA+ LF +M Q N+  N++TFLS+L AC++ G  D G  +   + K 
Sbjct: 373 SMIAAYGFHGQGEEAIKLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKK 432

Query: 364 HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA-SWNAMISGLAMHGKADKA 420
           +     +  +T L+D+  + G ++ AE +   M  K  A  W  ++S   +H  A+ A
Sbjct: 433 YGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSMPVKADAIIWKTLLSACKIHKNAEIA 490



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 151/294 (51%), Gaps = 16/294 (5%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPF----GDLSYALLVFETIREPNQVIWNNII 102
           +QVH+ ++K G          L+  C+++      G +     V   + + + V WN ++
Sbjct: 221 QQVHAYVMKCGFE------CNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTLM 274

Query: 103 RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE 162
            G +        +  Y  M ++GF P+  TF  ++ SC++++ + +GKQIHA  +K G  
Sbjct: 275 SGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCSELAILCQGKQIHAEAVKAGAS 334

Query: 163 SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
           S+  V +SL++MY++ G L+ +   F +   RD V ++++I  Y   G  ++A +LF+EM
Sbjct: 335 SEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEAIKLFNEM 394

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGNWVCS-LIEGHGLGSNLHVTNALIDMYSKC 281
              +EN   NE T +++L AC+H G  + G  +   +++ +GL + L     L+D+  + 
Sbjct: 395 --EQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDLLGRS 452

Query: 282 GDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
           G L +A  +  S+  K D I W  ++       + + A  +  ++L+  I+P D
Sbjct: 453 GCLEEAEAMIRSMPVKADAIIWKTLLSACKIHKNAEIARRVADEVLR--IDPQD 504


>gi|7362769|emb|CAB83139.1| putative protein [Arabidopsis thaliana]
          Length = 558

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 251/598 (41%), Positives = 356/598 (59%), Gaps = 100/598 (16%)

Query: 97  IWNNIIRG--HSLSS----SPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
           +WN IIR   H++SS    SP   I  Y+RM      P+ +TFPF+L S      +  G+
Sbjct: 26  LWNIIIRAIVHNVSSPQRHSP---ISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQ 82

Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
           + HA +L  GL+ DPFV TSL+NMY+                               S G
Sbjct: 83  RTHAQILLFGLDKDPFVRTSLLNMYS-------------------------------SCG 111

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
            L  A+++FD+                         GS +L  W                
Sbjct: 112 DLRSAQRVFDDS------------------------GSKDLPAW---------------- 131

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML---- 326
            N++++ Y+K G +  AR LF+ + +R+VISW+ +I GY     YKEAL LFR+M     
Sbjct: 132 -NSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKP 190

Query: 327 -QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
            ++ + PN+ T  +VL AC  LGAL+ GKW+HAYIDK H +++ + L T+LIDMYAKCG+
Sbjct: 191 NEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEID-IVLGTALIDMYAKCGS 249

Query: 386 IKAAEQVFDGMGYKT-LASWNAMISGLAMHGKADKALSLFSRMI-GEGLQPDDITFVGVL 443
           ++ A++VF+ +G K  + +++AMI  LAM+G  D+   LFS M   + + P+ +TFVG+L
Sbjct: 250 LERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGIL 309

Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
            AC H GL++ G+ YF  MI+++ I+P +QHYGCMVDL GR+GL  EAE+ + +M M+PD
Sbjct: 310 GACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPD 369

Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563
             IW SLL   R+ G ++  E   K L+EL+P N GAYVLLSN+YA  GRW +       
Sbjct: 370 VLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWME------- 422

Query: 564 LNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEV 623
               G+ KVPGCS +EV  VVHEF+VGD+   +S+ IY MLDEI   L ++G+V DT EV
Sbjct: 423 ----GINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEV 478

Query: 624 LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIF 681
           L D++E+ KE ALS+HSEKLAIA+ L+ T+PGT +RI+KNLR+CG+CH     +++IF
Sbjct: 479 LLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLTGLALAEIF 536



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 136/263 (51%), Gaps = 9/263 (3%)

Query: 73  AVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMIL----SGFV- 127
           A +  G +  A  +F+ + E N + W+ +I G+ +      A+  +  M L      FV 
Sbjct: 137 AYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVR 196

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           PN +T   +L +C ++ A+ +GK +HA++ K  +E D  + T+LI+MYA+ G LE A+ V
Sbjct: 197 PNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRV 256

Query: 188 FNK-SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHM 246
           FN   S +D  +Y+A+I   A  G  D+  QLF EM    +N  PN  T V +L AC H 
Sbjct: 257 FNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTT-SDNINPNSVTFVGILGACVHR 315

Query: 247 GSLELG-NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNV 304
           G +  G ++   +IE  G+  ++     ++D+Y + G + +A     S+  + DV+ W  
Sbjct: 316 GLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGS 375

Query: 305 MIGGYTHTSDYKEALMLFRQMLQ 327
           ++ G     D K      +++++
Sbjct: 376 LLSGSRMLGDIKTCEGALKRLIE 398


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/603 (40%), Positives = 365/603 (60%), Gaps = 31/603 (5%)

Query: 123 LSGFVPNTYTFP-----FILKSCAKISAISEGKQIHAHVLKLG-LESDPFVHTSLINM-- 174
           ++ F+  T  +P     ++L+ CA  S+  + + IHA  ++ G L ++P +   LI    
Sbjct: 6   VTSFLSTTPEYPLTKCIYLLQFCA--SSKHKLRXIHAFSIRHGVLLNNPDMGKHLIFTIV 63

Query: 175 -------YAQN---GELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPI 224
                  YA N     L  A  VF      +  ++  +  GYA       A + + +M +
Sbjct: 64  SLSAPMSYAYNVFTWVLSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIV 123

Query: 225 REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
                 P+  T   +L A +   ++  G  + S+   +G  S + V N+L+ +Y+ CGD 
Sbjct: 124 --SRIEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDT 181

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
             A ++FE +  RD+++   +I G+       EAL LFR+M    +EP+  T +S+L A 
Sbjct: 182 ESAHNVFELMRDRDLVAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSAS 241

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
           A LGAL+LG+ +H Y+ K   +  N  +  SL+D+YAKC  I   E        +   SW
Sbjct: 242 AELGALELGRRVHVYLLKVGLR-ENSHVTNSLLDLYAKCDAIWEXE--------RNAVSW 292

Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
            ++I GLA++G  ++AL LF  M G+GL P +ITFVGVL AC+H G+LD G  YF  M +
Sbjct: 293 TSLIVGLAVNGFGEEALELFREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDYFRRMKE 352

Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGE 524
           ++ I P+++HYGCMVDLL RAGL  +A   ++ M ++P+A  W +LLGAC +HG L LGE
Sbjct: 353 EFGIMPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTIHGHLGLGE 412

Query: 525 SVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVV 584
           +   HLL+LEP++ G YVLLSN+Y    RW DV  IR  +   G+KK  G S +E+G+ V
Sbjct: 413 TARSHLLKLEPKHSGDYVLLSNLYTSECRWADVQLIRRSMLKDGVKKTSGYSLVELGNRV 472

Query: 585 HEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLA 644
           +EF +G++ HPQS+ +Y +L++I  LL+  G+VP T+ VL D++EE KE ALS+HSEK A
Sbjct: 473 YEFTMGNRSHPQSQDVYALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKXA 532

Query: 645 IAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCN 704
           IA+  ++T PGTTIR++KNLRVC +CH A KL++K+++REI+ RDR RFHHF+ G+CSC 
Sbjct: 533 IAFMRLNTAPGTTIRVMKNLRVCADCHMAIKLMAKVYDREIVIRDRGRFHHFRGGSCSCK 592

Query: 705 DYW 707
           DYW
Sbjct: 593 DYW 595



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 134/409 (32%), Positives = 218/409 (53%), Gaps = 26/409 (6%)

Query: 20  SSDPPYKLLQNQPSLALLSKC-TNMQNIKQVHSQIIKTG--LHNTQFALSKLIEICAVS- 75
           S+ P Y L +    + LL  C ++   ++ +H+  I+ G  L+N       +  I ++S 
Sbjct: 11  STTPEYPLTK---CIYLLQFCASSKHKLRXIHAFSIRHGVLLNNPDMGKHLIFTIVSLSA 67

Query: 76  PFGD--------LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV 127
           P           LSYA  VF  I  PN   WN + RG++ S +P  A++FY +MI+S   
Sbjct: 68  PMSYAYNVFTWVLSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIE 127

Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
           P+T+T+PF+LK+ +K   + EG+ IH+  ++ G ES  FV  SL+++YA  G+ ESA  V
Sbjct: 128 PDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNV 187

Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMG 247
           F     RD V+  ++I G+A  G   +A  LF EM    E   P+  TVV++LSA A +G
Sbjct: 188 FELMRDRDLVAXISVINGFALNGRPSEALTLFREMS--AEGVEPDGFTVVSLLSASAELG 245

Query: 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG 307
           +LELG  V   +   GL  N HVTN+L+D+Y+KC  + +         +R+ +SW  +I 
Sbjct: 246 ALELGRRVHVYLLKVGLRENSHVTNSLLDLYAKCDAIWEX--------ERNAVSWTSLIV 297

Query: 308 GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
           G       +EAL LFR+M    + P+++TF+ VL AC++ G LD G      + +    +
Sbjct: 298 GLAVNGFGEEALELFREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDYFRRMKEEFGIM 357

Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA-SWNAMISGLAMHG 415
             +  +  ++D+ ++ G +K A +    M  +  A +W  ++    +HG
Sbjct: 358 PRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTIHG 406


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 250/683 (36%), Positives = 387/683 (56%), Gaps = 21/683 (3%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L L SKC  +   ++V        +    F+ + LI   A   + ++++ L  F+ + +P
Sbjct: 50  LLLYSKCRRLSAARRVFDHTHDCNV----FSFNTLISAYAKESYVEVAHQL--FDEMPQP 103

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG--KQ 151
           + V +N +I  ++       A + ++ M  +    + +T   I+ +C     I+ G  +Q
Sbjct: 104 DSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACG----INVGLIRQ 159

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN-KSSLRDAVSYTALITGYASRG 210
           +HA  +  GL+S   V  +LI  Y++NG L+ AR +F+  S  RD VS+ +++  Y    
Sbjct: 160 LHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHR 219

Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
               A +L+ EM +R    + +  T+ +VL+A  ++  L  G    + +   G   N HV
Sbjct: 220 EGSKALELYLEMTVR--GLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHV 277

Query: 271 TNALIDMYSKCGD-LVKARDLFESIEKRDVISWNVMIGGYTHTSDYK-EALMLFRQMLQS 328
            + LID+YSKCG  ++  R +F+ I   D++ WN MI GY+   D   EAL  FRQ+   
Sbjct: 278 GSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGV 337

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
              P+D + + V+ AC+ + +   G+ +H    K     N +S+  +LI MY+KCGN++ 
Sbjct: 338 GHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRD 397

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           A+ +FD M      S+N+MI+G A HG   ++L LF RM+     P +ITF+ VL+AC H
Sbjct: 398 AKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAH 457

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
            G ++ G+ YFN M Q + I P+  H+ CM+DLLGRAG   EAE L++T+   P    W+
Sbjct: 458 TGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWS 517

Query: 509 SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568
           +LLGACR+HG +EL    A  LL+L+P N   YV+L+N+Y+  GR  D A++R  + D+G
Sbjct: 518 ALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRG 577

Query: 569 MKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
           +KK PGCS IEV   +H F+  D  HP  K I E L+E+   ++K G+ P+        D
Sbjct: 578 VKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSASVGGD 637

Query: 629 EE-WK---EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNRE 684
           +  W+   E  L HHSEKLA+++GL+ST+ G  I + KNLR+C +CH+A K IS++  RE
Sbjct: 638 DRVWQREEELRLGHHSEKLAVSFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVVKRE 697

Query: 685 IIARDRNRFHHFKDGNCSCNDYW 707
           I  RD +RFH FKDG CSC  YW
Sbjct: 698 ITVRDSHRFHCFKDGQCSCGGYW 720


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/573 (41%), Positives = 346/573 (60%), Gaps = 5/573 (0%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           IL+ CA+  A+ E K  H  ++++ LE D  +   LIN Y++ G +E AR VF+    R 
Sbjct: 67  ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA-HMGSLELGNW 254
            VS+  +I  Y       +A  +F EM  R E F  +E T+ +VLSAC  +  +LE    
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEM--RNEGFKFSEFTISSVLSACGVNCDALECKKL 184

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
            C  ++   +  NL+V  AL+D+Y+KCG +  A  +FES++ +  ++W+ M+ GY    +
Sbjct: 185 HCLSVKT-CIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKN 243

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
           Y+EAL+L+R+  + ++E N  T  SV+ AC+ L AL  GK +HA I K+    +NV + +
Sbjct: 244 YEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFG-SNVFVAS 302

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
           S +DMYAKCG+++ +  +F  +  K L  WN +ISG A H +  + + LF +M  +G+ P
Sbjct: 303 SAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHP 362

Query: 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494
           +++TF  +LS C H GL++ GR++F  M   Y +SP + HY CMVD+LGRAGL  EA  L
Sbjct: 363 NEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYEL 422

Query: 495 LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554
           +K++   P A+IW SLL +CRV+  LEL E  A+ L ELEPEN G +VLLSN+YA   +W
Sbjct: 423 IKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQW 482

Query: 555 DDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKS 614
           +++A  R  L D  +KKV G S I++   VH F VG+  HP+ + I   LD +     K 
Sbjct: 483 EEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKF 542

Query: 615 GFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSAT 674
           G+ P     L+D++   KE  L  HSEKLA+ +GL+     + +RI+KNLR+C +CH   
Sbjct: 543 GYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFM 602

Query: 675 KLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           K  S    R II RD NRFHHF DG+CSC D+W
Sbjct: 603 KAASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 202/388 (52%), Gaps = 5/388 (1%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L L ++   +   K  H +II+  L      L+ LI   A S  G +  A  VF+ + E 
Sbjct: 68  LQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLIN--AYSKCGFVELARQVFDGMLER 125

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           + V WN +I  ++ +     A+  ++ M   GF  + +T   +L +C       E K++H
Sbjct: 126 SLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLH 185

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
              +K  ++ + +V T+L+++YA+ G ++ A  VF     + +V++++++ GY      +
Sbjct: 186 CLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYE 245

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           +A  L+     +  +   N+ T+ +V+ AC+++ +L  G  + ++I   G GSN+ V ++
Sbjct: 246 EALLLYRRA--QRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASS 303

Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
            +DMY+KCG L ++  +F  ++++++  WN +I G+   +  KE ++LF +M Q  + PN
Sbjct: 304 AVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPN 363

Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
           +VTF S+L  C + G ++ G+     +   +    NV  ++ ++D+  + G +  A ++ 
Sbjct: 364 EVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELI 423

Query: 394 DGMGYKTLAS-WNAMISGLAMHGKADKA 420
             + +   AS W ++++   ++   + A
Sbjct: 424 KSIPFDPTASIWGSLLASCRVYKNLELA 451


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/666 (35%), Positives = 383/666 (57%), Gaps = 12/666 (1%)

Query: 46  IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
           I Q+H+ +IK G        + L++  A      L  A  +F+ +   + V +N+++ G+
Sbjct: 159 IVQIHTHVIKLGYEYNLMVCNSLVD--AYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGY 216

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
           S       AI+ ++ +  SG  P+ +TF  +L +   +     G+Q+H  VLK     + 
Sbjct: 217 SNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNV 276

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           FV  +L++ Y+++ +++    +F +    D +SY  +IT YA  G   ++  LF ++   
Sbjct: 277 FVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFT 336

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWV-CSLIEGHGLGSNL--HVTNALIDMYSKCG 282
              F   +    T+LS      +L +G  + C  I    +G+N    V NAL+DMY+KC 
Sbjct: 337 R--FDRRQFPFATLLSIATSSLNLRMGRQIHCQAIT---VGANFESRVENALVDMYAKCN 391

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
              +A+ +F++I  +  + W  MI  Y     ++E + +F  M ++ +  +  TF S+L 
Sbjct: 392 GDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILR 451

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           ACA L ++ LG+ +H+ + ++   ++NV   ++L+D YAKCG +  A + F  M  +   
Sbjct: 452 ACANLASISLGRQLHSLLIRS-GFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSV 510

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           SWNA+IS  A +G  D  L+ F +MI  G +PD ++F+ VLSAC+H G ++    +FN+M
Sbjct: 511 SWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSM 570

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
            Q Y+++PK +HY  MVD+L R G FDEAE L+  M  +P   +W+S+L +CR+H   EL
Sbjct: 571 TQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHEL 630

Query: 523 GESVAKHLLELEP-ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581
            +  A  L  +E   +   Y+ +SN+YA AG+WD+VA ++  + D+G++KVP  S +E+ 
Sbjct: 631 AKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIK 690

Query: 582 SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSE 641
              H F   DK HP+ K I   ++ +   +EK G+ PDT+  L+D+DE  K  +L +HSE
Sbjct: 691 HQTHVFSANDKSHPEMKKILRKINALSKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSE 750

Query: 642 KLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNC 701
           + AIA+ L++T  G+ I ++KNLR C +CH+A K+IS+I  REII RD +RFHHFKDG C
Sbjct: 751 RFAIAFALMNTPDGSPIVVMKNLRACTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVC 810

Query: 702 SCNDYW 707
           SC DYW
Sbjct: 811 SCGDYW 816



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 143/527 (27%), Positives = 239/527 (45%), Gaps = 46/527 (8%)

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
           FG LS A  +F+ + E   V W  +I G+  S+    A + Y  M   G  P+  T   +
Sbjct: 87  FGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTL 146

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L    ++   +   QIH HV+KLG E +  V  SL++ Y +   L  A  +F     +D 
Sbjct: 147 LSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDT 206

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           V++ +L+TGY++ G  ++A +LF E+        P++ T   +LSA   +   + G  V 
Sbjct: 207 VTFNSLMTGYSNEGLNEEAIELFLEL--HNSGIKPSDFTFAALLSAAVGLDDTKFGQQVH 264

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
             +       N+ V NAL+D YSK   + +   LF  + + D IS+NV+I  Y     +K
Sbjct: 265 GFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFK 324

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY---IDKNHQKLNNVSLW 373
           E+  LFR++  +  +     F ++L        L +G+ IH     +  N +      + 
Sbjct: 325 ESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFES----RVE 380

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
            +L+DMYAKC   K A+++FD +  K+   W AMIS     GK ++ +++FS M   G+ 
Sbjct: 381 NALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVP 440

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQD------YKISPKLQHY---GCMVDLLGR 484
            D  TF  +L AC +   + +GRQ  + +I+       Y  S  L  Y   GCM D +  
Sbjct: 441 ADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKS 500

Query: 485 AGLFDEAEAL------------------LKTMEM------KPDAAIWTSLLGACRVHGRL 520
            G   E  ++                  L + +       KPD+  + S+L AC   G +
Sbjct: 501 FGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFV 560

Query: 521 ELG---ESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564
           E      +    + E+ P+    Y  + ++    GR+D+   + T +
Sbjct: 561 EEALWHFNSMTQIYEVTPKRE-HYTSMVDVLCRNGRFDEAEKLMTEM 606



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 186/409 (45%), Gaps = 42/409 (10%)

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           I AH++K G   +       +N + + G+L  A  VF++   ++ +S   +I+G+   G 
Sbjct: 30  IDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGK 89

Query: 212 LDDARQLFDEM-----------------------------PIREENFVPNESTVVTVLSA 242
           L  AR+LFD M                              +R     P+  T+VT+LS 
Sbjct: 90  LSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSG 149

Query: 243 CAHMGSLELGNWVCSLIEGH----GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD 298
               G LE  N +   I  H    G   NL V N+L+D Y K   L  A  LF+ +  +D
Sbjct: 150 ---FGELETKNVIVQ-IHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKD 205

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
            +++N ++ GY++    +EA+ LF ++  S I+P+D TF ++L A   L     G+ +H 
Sbjct: 206 TVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHG 265

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKAD 418
           ++ K +  + NV +  +L+D Y+K   +    ++F  M      S+N +I+  A +G+  
Sbjct: 266 FVLKTN-FVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFK 324

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ-YFNAMIQDYKISPKLQHYGC 477
           ++  LF ++           F  +LS    +  L +GRQ +  A+        ++++   
Sbjct: 325 ESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVEN--A 382

Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
           +VD+  +     EA+ +   +  K     WT+++ A    G+ E G +V
Sbjct: 383 LVDMYAKCNGDKEAQKIFDNIACKSTVP-WTAMISAYVQKGKHEEGINV 430


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 249/679 (36%), Positives = 381/679 (56%), Gaps = 10/679 (1%)

Query: 34  LALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           + LL  C+   N+     +H   +K GL +     + LI++   S  G LS A ++F  I
Sbjct: 317 VTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDM--YSKCGCLSEAAILFRKI 374

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV--PNTYTFPFILKSCAKISAISE 148
              + V WN++I  +S             +M +   +   N  T   +L +C + S +  
Sbjct: 375 ENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLS 434

Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
            + +H + L+   +    ++ + I  YA+ G L  A  VF   + +   S+ A+I G+A 
Sbjct: 435 LRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQ 494

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
            G    A   + EM       +P++ ++V++L AC  +G L+ G  +   +  +GL  N 
Sbjct: 495 NGDPIKALDFYFEMT--RLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNS 552

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
            V  +L+ +Y  C      R  FE +  ++ + WN M+ GY+      EAL LFRQML  
Sbjct: 553 FVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSD 612

Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
            +EP+++   S+L AC+ L AL LGK +H +  KN    +N  +  SL+DMYAK G +  
Sbjct: 613 GLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNF-VACSLMDMYAKSGFLGH 671

Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
           ++++F+ +  K +ASWN MI+G  +HG+ +KA+ LF  M     QPD  TF+GVL AC H
Sbjct: 672 SQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCH 731

Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
           AGL+  G  Y   M   YK+ P+L+HY C++D+LGRAG  +EA   +  M  +PDA IW+
Sbjct: 732 AGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWS 791

Query: 509 SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568
           SLL +   +  LE+GE  A+ LL LE     +Y+LLSN+YA AG+WD V  +R ++ D  
Sbjct: 792 SLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLS 851

Query: 569 MKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
           ++K  GCS IE+   V+ F+ G+  +P S  I +M + ++  + + G+ PD S VL++++
Sbjct: 852 LQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELE 911

Query: 629 EEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIAR 688
           E  K   L  HSEK+AI +G ++TK GTT+RI KNLR+C +CH+A K ISK   REI+ R
Sbjct: 912 EVEKRKILKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIR 971

Query: 689 DRNRFHHFKDGNCSCNDYW 707
           D  RFHHFK G CSC DYW
Sbjct: 972 DNKRFHHFKKGICSCGDYW 990



 Score =  245 bits (626), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 187/642 (29%), Positives = 313/642 (48%), Gaps = 63/642 (9%)

Query: 21  SDPPYKLLQNQPSLA-LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGD 79
           ++  Y L Q + ++  LL KC   +N+ ++  ++ +    ++QF+   ++    ++ +  
Sbjct: 97  NNAGYDLAQRKEAMGMLLQKCGQYKNV-EIGRKLDEMLCVSSQFSGDFVLNTRLITMYSI 155

Query: 80  LSYAL---LVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI-LSGFVPNTYTFPF 135
             Y L   LVF+ +   N   WN ++ G+  +     AI  ++ +I ++ F P+ +TFP 
Sbjct: 156 CGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPC 215

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
           ++K+C     I  GK +H   +K+GL  D FV  ++I +Y + G L+ A  +F+K   ++
Sbjct: 216 LIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQN 275

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
            +S+ +LI G++  G+  +A + F  +    +  +P+ +T+VT+L  C+  G++++G  +
Sbjct: 276 LISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVI 335

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
             +    GL   L V NALIDMYSKCG L +A  LF  IE + V+SWN MIG Y+     
Sbjct: 336 HGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFV 395

Query: 316 KEALMLFRQMLQSN--IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
            E   L R+M      +E N+VT L++LPAC     L   + +H Y  ++  +   + + 
Sbjct: 396 FETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKEL-IN 454

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
            + I  YAKCG++  AE VF GM  K+++SWNA+I G A +G   KAL  +  M   G+ 
Sbjct: 455 NAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGIL 514

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQD-------YKISPKLQHYGCMVDLLGRA- 485
           PDD + V +L AC   GLL  G++    ++++         +S    ++ C     GR  
Sbjct: 515 PDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTY 574

Query: 486 ----------------------GLFDEAEALLKTM---EMKPDAAIWTSLLGACRVHGRL 520
                                  L +EA +L + M    ++PD     S+LGAC     L
Sbjct: 575 FERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSAL 634

Query: 521 ELGESVAKHLLELEP---ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577
            LG+ V  H   L+    E+      L +MYA +G       I  RLN K          
Sbjct: 635 GLGKEV--HCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGK---------- 682

Query: 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPD 619
            EV S  +  + G  VH Q     E+ ++    +++S   PD
Sbjct: 683 -EVAS-WNVMITGFGVHGQGNKAVELFED----MKRSDKQPD 718


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/579 (41%), Positives = 351/579 (60%), Gaps = 8/579 (1%)

Query: 125 GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184
           G   ++ T+  ++K C    A+ EG  I  H+   G +   F+   LINMY +   L  A
Sbjct: 8   GLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDA 67

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
             +F++   R+ +S+T +I+ Y+       A +L   + +  +   PN  T  +VL AC 
Sbjct: 68  HQLFDQMPQRNVISWTTMISAYSKCKIHQKALELL--VLMLRDGVRPNVYTYSSVLRACN 125

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
            M  + + +  C +I+  GL S+++V +ALID+++K G+   A  +F+ +   D I WN 
Sbjct: 126 GMSDVRMLH--CGIIK-EGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNS 182

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           +IGG+   S    AL LF++M ++       T  SVL AC  L  L+LG   H +I K  
Sbjct: 183 IIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD 242

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF 424
           Q L    L  +L+DMY KCG+++ A +VF+ M  + + +W+ MISGLA +G + +AL LF
Sbjct: 243 QDL---ILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLF 299

Query: 425 SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484
             M   G +P+ IT VGVL AC+HAGLL+ G  YF +M + Y I+P  +HYGCM+DLLG+
Sbjct: 300 ELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGK 359

Query: 485 AGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL 544
           AG  D+A  LL  ME +PDA  W +LLGACRV   + L E  AK ++ L+PE+ G Y +L
Sbjct: 360 AGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVL 419

Query: 545 SNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEML 604
           SN+YA + +WD V  IR R+ D G+KK PGCS IEV   +H F++GD+ HPQ   + + L
Sbjct: 420 SNIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNKKL 479

Query: 605 DEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNL 664
           +++   L   G+VP+T+ VL D++ E  E +L HHSEKLA+A+GL++      IRI KNL
Sbjct: 480 NQLIHRLIGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPSEKVIRIRKNL 539

Query: 665 RVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSC 703
           R+CG+CH   KL SK+ NR I+ RD  R+HHF+DG CSC
Sbjct: 540 RICGDCHVFCKLASKLENRNIVIRDPIRYHHFQDGKCSC 578



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 116/377 (30%), Positives = 200/377 (53%), Gaps = 26/377 (6%)

Query: 77  FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
           F  L+ A  +F+ + + N + W  +I  +S       A++  V M+  G  PN YT+  +
Sbjct: 61  FNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSV 120

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L++C   + +S+ + +H  ++K GLESD +V ++LI+++A+ GE E A  VF++    DA
Sbjct: 121 LRAC---NGMSDVRMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDA 177

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           + + ++I G+A     D A +LF  M  +   F+  ++T+ +VL AC  +  LELG    
Sbjct: 178 IVWNSIIGGFAQNSRSDVALELFKRM--KRAGFIAEQATLTSVLRACTGLALLELG---- 231

Query: 257 SLIEGH----GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
             ++ H        +L + NAL+DMY KCG L  AR +F  +++RDVI+W+ MI G    
Sbjct: 232 --MQAHVHIVKYDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQN 289

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS- 371
              +EAL LF  M  S  +PN +T + VL AC++ G L+ G W   Y  ++ +KL  ++ 
Sbjct: 290 GYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDG-W---YYFRSMKKLYGINP 345

Query: 372 ---LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA-SWNAMISGLAMHGKADKALSLFSRM 427
               +  +ID+  K G +  A ++ + M  +  A +W  ++   A   + +  L+ ++  
Sbjct: 346 GREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLG--ACRVQRNMVLAEYAAK 403

Query: 428 IGEGLQPDDITFVGVLS 444
               L P+D     VLS
Sbjct: 404 KVIALDPEDAGTYTVLS 420



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 186/369 (50%), Gaps = 43/369 (11%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           ++L  C  M +++ +H  IIK GL +  +  S LI++ A    G+   AL VF+ +   +
Sbjct: 119 SVLRACNGMSDVRMLHCGIIKEGLESDVYVRSALIDVFA--KLGEPEDALSVFDEMVTGD 176

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
            ++WN+II G + +S   VA++ + RM  +GF+    T   +L++C  ++ +  G Q H 
Sbjct: 177 AIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHV 236

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
           H++K   + D  ++ +L++MY + G LE AR VFN+   RD ++++ +I+G A  GY  +
Sbjct: 237 HIVK--YDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQE 294

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVTNA 273
           A +LF+ M  +     PN  T+V VL AC+H G LE G  +  S+ + +G+         
Sbjct: 295 ALKLFELM--KSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGC 352

Query: 274 LIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           +ID+  K G L  A  L   +E + D ++W  ++G      +   A    ++++   ++P
Sbjct: 353 MIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIA--LDP 410

Query: 333 NDVTFLSVL----------------------------PACAYLGALDLGKWIHAYI--DK 362
            D    +VL                            P C++   +++ K IHA+I  D+
Sbjct: 411 EDAGTYTVLSNIYANSQKWDSVEEIRKRMRDIGIKKEPGCSW---IEVNKQIHAFIIGDE 467

Query: 363 NHQKLNNVS 371
           +H ++  V+
Sbjct: 468 SHPQIVEVN 476


>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Cucumis sativus]
          Length = 602

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/578 (40%), Positives = 359/578 (62%), Gaps = 14/578 (2%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN--GELESARLVFNKSSL 193
           ++KSC   S +    QIHAH++      DP V    +   A     +L  +R +F+  + 
Sbjct: 33  LIKSCTHKSQL---LQIHAHIITTSSIQDPIVSLRFLTRTASAPFRDLGYSRRLFDLLTN 89

Query: 194 RDAVSYTALITGYA-SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG 252
                Y A++  Y+ SR  L+    ++ +M  +     P  S+    + +C  + SL  G
Sbjct: 90  PFVSHYNAMLRAYSLSRSPLE-GLYMYRDMERQGVRADPLSSSFA--VKSCIKLLSLLFG 146

Query: 253 NWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHT 312
             + + I  +G  ++  +  +++D+YS CG   +A  LF+ + ++DV++WNV+I   T  
Sbjct: 147 IQIHARIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCLTRN 206

Query: 313 SDYKEALMLFRQMLQSNI---EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNN 369
              ++AL LF +++QS     +P+ VT L +L ACA L AL+ G+ IH YI + H     
Sbjct: 207 KRTRDALGLF-EIMQSPTYLCQPDKVTCLLLLQACADLNALEFGERIHGYI-QQHGYNTE 264

Query: 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG 429
            +L  SLI MY++CG +  A +VFD M  K + SW+AMISGL+M+G   +A+  F  M  
Sbjct: 265 SNLCNSLISMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNGHGREAIEAFWEMQK 324

Query: 430 EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489
            G++P D TF  VLSAC+H GL+D G  +F+ M Q++ I+P + HYGC+VDLLGRAG+ D
Sbjct: 325 NGVEPGDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIAPNVHHYGCIVDLLGRAGMLD 384

Query: 490 EAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549
           +A  L+ +ME++PDA +W +LLGACR+HG   LGE + +HL+EL+ +  G YVLL N+Y+
Sbjct: 385 QAYELIMSMEVRPDATMWRTLLGACRIHGHGNLGERIVEHLIELKSQEAGDYVLLLNIYS 444

Query: 550 GAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDA 609
            AG WD V  +R  + +KG+   P C++IE+  VVH+F V D  HP    IY+ LDEI+ 
Sbjct: 445 SAGNWDKVTELRKLMKEKGIYTTPCCTTIELNGVVHQFAVDDISHPMKDKIYKQLDEINK 504

Query: 610 LLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGN 669
            L+ +G+  + S  L+ ++ + K  ALS+HSEKLAIA+G+++T PG TIRI  N+R C +
Sbjct: 505 QLKIAGYEAEMSSELHRLEPKDKGYALSNHSEKLAIAFGVLATPPGRTIRIANNIRTCMD 564

Query: 670 CHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           CH+  K IS ++NR+++ RDR+RFHHF++G CSCND+W
Sbjct: 565 CHNFAKYISSVYNRKVVVRDRSRFHHFQEGRCSCNDFW 602



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 119/423 (28%), Positives = 219/423 (51%), Gaps = 8/423 (1%)

Query: 11  SPSILHFPPSSDP-PYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLI 69
           SPSIL          +   + +P ++L+  CT+   + Q+H+ II T          + +
Sbjct: 7   SPSILSLKYHHHSISFSHFEREPLISLIKSCTHKSQLLQIHAHIITTSSIQDPIVSLRFL 66

Query: 70  EICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPN 129
              A +PF DL Y+  +F+ +  P    +N ++R +SLS SP+  +  Y  M   G   +
Sbjct: 67  TRTASAPFRDLGYSRRLFDLLTNPFVSHYNAMLRAYSLSRSPLEGLYMYRDMERQGVRAD 126

Query: 130 TYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN 189
             +  F +KSC K+ ++  G QIHA +   G ++D  + TS++++Y+  G+ E A  +F+
Sbjct: 127 PLSSSFAVKSCIKLLSLLFGIQIHARIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFD 186

Query: 190 KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL 249
           +   +D V++  LI+         DA  LF+ M        P++ T + +L ACA + +L
Sbjct: 187 EVPQKDVVAWNVLISCLTRNKRTRDALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNAL 246

Query: 250 ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309
           E G  +   I+ HG  +  ++ N+LI MYS+CG + KA ++F+ + +++V+SW+ MI G 
Sbjct: 247 EFGERIHGYIQQHGYNTESNLCNSLISMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGL 306

Query: 310 THTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL-- 367
           +     +EA+  F +M ++ +EP D TF +VL AC++ G +D G    A+ D+  Q+   
Sbjct: 307 SMNGHGREAIEAFWEMQKNGVEPGDHTFTAVLSACSHCGLVDEGM---AFFDRMRQEFMI 363

Query: 368 -NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHGKADKALSLFS 425
             NV  +  ++D+  + G +  A ++   M  +  A+ W  ++    +HG  +    +  
Sbjct: 364 APNVHHYGCIVDLLGRAGMLDQAYELIMSMEVRPDATMWRTLLGACRIHGHGNLGERIVE 423

Query: 426 RMI 428
            +I
Sbjct: 424 HLI 426


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/632 (37%), Positives = 374/632 (59%), Gaps = 21/632 (3%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           G++  A  VF+ + E N V W  +++G+  +    VA   + +M       N  ++  +L
Sbjct: 93  GEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEK----NKVSWTVML 148

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
               +   I +  +++  +     + D    TS+I+   + G ++ AR +F++ S R  +
Sbjct: 149 IGFLQDGRIDDACKLYEMIP----DKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVI 204

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257
           ++T ++TGY     +DDAR++FD MP +       E +  ++L      G +E       
Sbjct: 205 TWTTMVTGYGQNNRVDDARKIFDVMPEK------TEVSWTSMLMGYVQNGRIEDAE---E 255

Query: 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317
           L E   +   +   NA+I    + G++ KAR +F+S+++R+  SW  +I  +       E
Sbjct: 256 LFEVMPVKPVI-ACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELE 314

Query: 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377
           AL LF  M +  + P   T +S+L  CA L +L  GK +HA + +    ++ V + + L+
Sbjct: 315 ALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVD-VYVASVLM 373

Query: 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG-LQPDD 436
            MY KCG +  ++ +FD    K +  WN++ISG A HG  ++AL +F  M   G  +P++
Sbjct: 374 TMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNE 433

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
           +TFV  LSAC++AG+++ G + + +M   + + P   HY CMVD+LGRAG F+EA  ++ 
Sbjct: 434 VTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMID 493

Query: 497 TMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
           +M ++PDAA+W SLLGACR H +L++ E  AK L+E+EPEN G Y+LLSNMYA  GRW D
Sbjct: 494 SMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWAD 553

Query: 557 VATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGD-KVHPQSKHIYEMLDEIDALLEKSG 615
           VA +R  +  + ++K PGCS  EV + VH F  G    HP+ + I ++LDE+D LL ++G
Sbjct: 554 VAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAG 613

Query: 616 FVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATK 675
           + PD S  L+D+DEE K  +L +HSE+LA+AY L+    G  IR++KNLRVC +CH+A K
Sbjct: 614 YNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIK 673

Query: 676 LISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +ISK+  REII RD NRFHHF++G CSC DYW
Sbjct: 674 IISKVKEREIILRDANRFHHFRNGECSCKDYW 705



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 104/422 (24%), Positives = 181/422 (42%), Gaps = 55/422 (13%)

Query: 171 LINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV 230
           L++ Y +NGE++ AR VF+    R+ VS+TAL+ GY   G +D A  LF +MP +     
Sbjct: 85  LVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEK----- 139

Query: 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDL 290
            N+ +   +L      G ++     C L E      N+  T ++I    K G + +AR++
Sbjct: 140 -NKVSWTVMLIGFLQDGRIDDA---CKLYEMIPDKDNIART-SMIHGLCKEGRVDEAREI 194

Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350
           F+ + +R VI+W  M+ GY   +   +A  +F  M     E  +V++ S+L     +G +
Sbjct: 195 FDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMP----EKTEVSWTSML-----MGYV 245

Query: 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISG 410
             G+   A        +  V    ++I    + G I  A +VFD M  +  ASW  +I  
Sbjct: 246 QNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKI 305

Query: 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ------ 464
              +G   +AL LF  M  +G++P   T + +LS C     L  G+Q    +++      
Sbjct: 306 HERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVD 365

Query: 465 ------------------------DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEM 500
                                   D   S  +  +  ++      GL +EA  +   M +
Sbjct: 366 VYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPL 425

Query: 501 ----KPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP--GAYVLLSNMYAGAGRW 554
               KP+   + + L AC   G +E G  + + +  +    P    Y  + +M   AGR+
Sbjct: 426 SGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRF 485

Query: 555 DD 556
           ++
Sbjct: 486 NE 487



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 153/349 (43%), Gaps = 65/349 (18%)

Query: 172 INMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVP 231
           I   ++ G++  AR +F+    +   S+ +++ GY +     DAR+LFDEMP R      
Sbjct: 24  ITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDR------ 77

Query: 232 NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLF 291
                                              N+   N L+  Y K G++ +AR +F
Sbjct: 78  -----------------------------------NIISWNGLVSGYMKNGEIDEARKVF 102

Query: 292 ESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALD 351
           + + +R+V+SW  ++ GY H      A  LF +M     E N V++  +L      G +D
Sbjct: 103 DLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMP----EKNKVSWTVMLIGFLQDGRID 158

Query: 352 LGKWIHAYI-DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISG 410
               ++  I DK     +N++  TS+I    K G +  A ++FD M  +++ +W  M++G
Sbjct: 159 DACKLYEMIPDK-----DNIAR-TSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTG 212

Query: 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470
              + + D A  +F  M     +  ++++  +L      G ++   + F  M     + P
Sbjct: 213 YGQNNRVDDARKIFDVM----PEKTEVSWTSMLMGYVQNGRIEDAEELFEVM----PVKP 264

Query: 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
            +     M+  LG+ G   +A  +  +M+ + DA+ W +++   ++H R
Sbjct: 265 VIA-CNAMISGLGQKGEIAKARRVFDSMKERNDAS-WQTVI---KIHER 308



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 130/290 (44%), Gaps = 25/290 (8%)

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N  I   S+ G + +AR LF+S + + + SWN M+ GY      ++A  LF +M   NI 
Sbjct: 21  NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNI- 79

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
              +++  ++      G +D  + +   + +      NV  WT+L+  Y   G +  AE 
Sbjct: 80  ---ISWNGLVSGYMKNGEIDEARKVFDLMPE-----RNVVSWTALVKGYVHNGKVDVAES 131

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           +F  M  K   SW  M+ G    G+ D A  L+  MI +    D+I    ++      G 
Sbjct: 132 LFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYE-MIPD---KDNIARTSMIHGLCKEGR 187

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           +D  R+ F+ M +   I+     +  MV   G+    D+A  +   M  K + + WTS+L
Sbjct: 188 VDEAREIFDEMSERSVIT-----WTTMVTGYGQNNRVDDARKIFDVMPEKTEVS-WTSML 241

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIR 561
                +GR+E  E     L E+ P  P   +  + M +G G+  ++A  R
Sbjct: 242 MGYVQNGRIEDAE----ELFEVMPVKP--VIACNAMISGLGQKGEIAKAR 285


>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
 gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
 gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/567 (41%), Positives = 355/567 (62%), Gaps = 12/567 (2%)

Query: 150 KQIHAHVLKLGL--ESDPFVH-TSLINMYAQNGELESARLVFNKSSLRDAVSY-TALITG 205
           +QIHA +L+  L   SD F H  S + +     ++  +  VF++  L   +S+   +I  
Sbjct: 28  RQIHALLLRTSLIRNSDVFHHFLSRLALSLIPRDINYSCRVFSQR-LNPTLSHCNTMIRA 86

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           ++      +  +LF  +  R  +   N  +    L  C   G L  G  +   I   G  
Sbjct: 87  FSLSQTPCEGFRLFRSLR-RNSSLPANPLSSSFALKCCIKSGDLLGGLQIHGKIFSDGFL 145

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
           S+  +   L+D+YS C +   A  +F+ I KRD +SWNV+   Y      ++ L+LF +M
Sbjct: 146 SDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLVLFDKM 205

Query: 326 ---LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
              +   ++P+ VT L  L ACA LGALD GK +H +ID+N      ++L  +L+ MY++
Sbjct: 206 KNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLS-GALNLSNTLVSMYSR 264

Query: 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
           CG++  A QVF GM  + + SW A+ISGLAM+G   +A+  F+ M+  G+ P++ T  G+
Sbjct: 265 CGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGL 324

Query: 443 LSACNHAGLLDIGRQYFNAMIQ-DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK 501
           LSAC+H+GL+  G  +F+ M   ++KI P L HYGC+VDLLGRA L D+A +L+K+MEMK
Sbjct: 325 LSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSLIKSMEMK 384

Query: 502 PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIR 561
           PD+ IW +LLGACRVHG +ELGE V  HL+EL+ E  G YVLL N Y+  G+W+ V  +R
Sbjct: 385 PDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGKWEKVTELR 444

Query: 562 TRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTS 621
           + + +K +   PGCS+IE+   VHEF+V D  HP+ + IY+ML EI+  L+ +G+V + +
Sbjct: 445 SLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGYVAEIT 504

Query: 622 EVLYDMDEEWKEG-ALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKI 680
             L++++ E ++G AL +HSEKLAIA+G++ T PGTTIR+ KNLR C +CH+  K +S +
Sbjct: 505 SELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNLRTCVDCHNFAKFVSDV 564

Query: 681 FNREIIARDRNRFHHFKDGNCSCNDYW 707
           ++R +I RDR+RFHHFK G+CSCND+W
Sbjct: 565 YDRIVIVRDRSRFHHFKGGSCSCNDFW 591



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 141/295 (47%), Gaps = 10/295 (3%)

Query: 20  SSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGD 79
           +S  P   L +  +L    K  ++    Q+H +I   G  +    ++ L+++   S   +
Sbjct: 106 NSSLPANPLSSSFALKCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDL--YSTCEN 163

Query: 80  LSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI--LSGFV-PNTYTFPFI 136
            + A  VF+ I + + V WN +   +  +      +  + +M   + G V P+  T    
Sbjct: 164 STDACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLA 223

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           L++CA + A+  GKQ+H  + + GL     +  +L++MY++ G ++ A  VF     R+ 
Sbjct: 224 LQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNV 283

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
           VS+TALI+G A  G+  +A + F+EM   +    P E T+  +LSAC+H G +  G    
Sbjct: 284 VSWTALISGLAMNGFGKEAIEAFNEML--KFGISPEEQTLTGLLSACSHSGLVAEGMMFF 341

Query: 257 SLIEG--HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGG 308
             +      +  NLH    ++D+  +   L KA  L +S+E K D   W  ++G 
Sbjct: 342 DRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGA 396


>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
          Length = 770

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 250/701 (35%), Positives = 397/701 (56%), Gaps = 28/701 (3%)

Query: 26  KLLQNQPSLALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSY 82
           K +Q+   + LL +C  M ++   + VH  + KTG     F  + L+   A    G    
Sbjct: 74  KAVQSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVN--AYMRCGAARD 131

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
           A  +F+ + E N V W  ++ G++L+S P + ++ +V M+  G  P+ YT    L +C  
Sbjct: 132 ARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLA 191

Query: 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTAL 202
              +  GKQ+H + +K G ES   +  SL ++YA+ G L+SA   F +   ++ +++T +
Sbjct: 192 SCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTM 251

Query: 203 ITGYAS-RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
           I+  A     ++    LF +M +  +  +PNE T+ +V+S C     L LG  V +    
Sbjct: 252 ISACAEDEECVELGLSLFIDMLM--DGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFK 309

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK----- 316
            G  +NL V N+ + +Y + G+  +A  LFE +E   +I+WN MI GY    D       
Sbjct: 310 IGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQ 369

Query: 317 ------EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNV 370
                 +AL +FR + +S ++P+  TF S+L  C+ + AL+ G+ IHA   K+   L++V
Sbjct: 370 ARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSG-FLSDV 428

Query: 371 SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE 430
            + ++L++MY KCG I+ A + F  M  +T  +W +MISG + HG+  +A+ LF  M   
Sbjct: 429 VVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLA 488

Query: 431 GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490
           G++P++ITFV +LSAC++AGL++    YF+ M ++Y I P + HYGCM+D+  R G  ++
Sbjct: 489 GVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVED 548

Query: 491 AEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAG 550
           A + +K    +P+ AIW+SL+  CR HG +EL    A  LLEL+P+    Y+LL NMY  
Sbjct: 549 AFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYIS 608

Query: 551 AGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDAL 610
             RW DVA +R  +  + +  +   S I +   V+ F   D+ HPQ+  +Y++L+    L
Sbjct: 609 TERWQDVARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQLLEN---L 665

Query: 611 LEKS---GFVPDTSEVLYDM--DEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLR 665
           LEK+   G+ P  +  L D   DE+   G+L HHSE+LA+A GL+ T PG T+R+ KN+ 
Sbjct: 666 LEKAKAIGYEPYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPPGATVRVTKNIT 725

Query: 666 VCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDY 706
           +C +CHS+ KL S + NREII RD  R H FKDG CSC D+
Sbjct: 726 MCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGRCSCGDF 766



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 113/411 (27%), Positives = 191/411 (46%), Gaps = 17/411 (4%)

Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
           M+  G    +  +  +L  C ++ ++   + +H H+ K G  +D FV TSL+N Y + G 
Sbjct: 69  MLTEGKAVQSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGA 128

Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
              AR +F+    R+ V++TAL+TGY          ++F EM   E    P+  T+   L
Sbjct: 129 ARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEM--LEMGRYPSHYTLGATL 186

Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVI 300
           +AC     ++LG  V      +G  S   + N+L  +Y+K G L  A   F  I +++VI
Sbjct: 187 NACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVI 246

Query: 301 SWNVMIGGYTHTSDYKE-ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAY 359
           +W  MI       +  E  L LF  ML   + PN+ T  SV+  C     L+LGK + A+
Sbjct: 247 TWTTMISACAEDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAF 306

Query: 360 IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAM------ 413
             K   +  N+ +  S + +Y + G    A ++F+ M   ++ +WNAMISG A       
Sbjct: 307 SFKIGCE-TNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAK 365

Query: 414 -----HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468
                  +  +AL++F  +    ++PD  TF  +LS C+    L+ G Q     I+   +
Sbjct: 366 DDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFL 425

Query: 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
           S  + +   +V++  + G   +A      M  +     WTS++     HG+
Sbjct: 426 SDVVVN-SALVNMYNKCGCIQDANKAFLEMPTRT-FVTWTSMISGYSQHGQ 474



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 143/295 (48%), Gaps = 8/295 (2%)

Query: 220 DEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYS 279
           + M +  E      +  V +L  C  MGSL     V   +   G G+++ V  +L++ Y 
Sbjct: 65  EAMTMLTEGKAVQSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYM 124

Query: 280 KCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS 339
           +CG    AR LF+ + +R+V++W  ++ GYT  S     L +F +ML+    P+  T  +
Sbjct: 125 RCGAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGA 184

Query: 340 VLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK 399
            L AC     +DLGK +H Y  K +   +  S+  SL  +YAK G++ +A + F  +  K
Sbjct: 185 TLNACLASCDVDLGKQVHGYAIK-YGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEK 243

Query: 400 TLASWNAMISGLAMHGK-ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQY 458
            + +W  MIS  A   +  +  LSLF  M+ +G+ P++ T   V+S C     L++G+Q 
Sbjct: 244 NVITWTTMISACAEDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQ- 302

Query: 459 FNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI--WTSLL 511
             A          L      + L  R G  DEA  L + ME   DA+I  W +++
Sbjct: 303 VQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQME---DASIITWNAMI 354


>gi|297794157|ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310798|gb|EFH41222.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 720

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 247/677 (36%), Positives = 391/677 (57%), Gaps = 14/677 (2%)

Query: 36  LLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LL +C +   +  IK + +Q++K+G    + + SKL++  A    G++ YA  +F+ + E
Sbjct: 53  LLRQCIDERSISGIKNIQAQMLKSGFP-VELSGSKLVD--ASLKCGEIGYARQLFDGMPE 109

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V WN+II  +        A++ Y  MI +  +P+ YT   + K+ + +S   E ++ 
Sbjct: 110 RHIVTWNSIIAYYIKHRRSKEAVEMYRLMISNNVLPDEYTLSSVFKAFSDLSLEKEAQRS 169

Query: 153 HAHVLKLGLE-SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           H   + LGLE S+ FV ++L++MY + G+   A+LV ++   +D V  TALI GY+ +G 
Sbjct: 170 HGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGE 229

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
             +A + F  M +  E   PNE T  +VL +C ++  +  G  +  L+   G  S L   
Sbjct: 230 DTEAVKAFQSMLV--EKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQ 287

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
            +L+ MY +C  +  +  +F+ I+  + ++W  +I G       + AL+ FR+M++ +++
Sbjct: 288 TSLLTMYLRCSLVDDSLLVFKCIKYPNQVTWTSLISGLVQNGREETALIEFRKMMRDSVK 347

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           PN  T  S L  C+ L   + G+ +H  + K     +  +  + LI++Y KCG    A  
Sbjct: 348 PNSFTLSSALRGCSNLAMFEEGRQVHGIVSKYGFDRDKYA-GSGLIELYGKCGCSDMARL 406

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VFD +    + S N MI   A +G   +AL LF RMI  GLQP+D+T + VL ACN++GL
Sbjct: 407 VFDTLSEVDVISLNTMIYSYAQNGFGREALELFERMINLGLQPNDVTVLSVLLACNNSGL 466

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           ++ G + F++  +D KI     HY CMVD+LGRAG  +EAE L+ T    PD  +W +LL
Sbjct: 467 VEEGCELFDSFRKD-KIMLTNDHYACMVDMLGRAGRLEEAEMLI-TEVTNPDLVLWRTLL 524

Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
            AC+VH ++E+ E + + +LE+ P + G  +LLSN+YA  G+W  V  +++++ +  +KK
Sbjct: 525 SACKVHRKVEMAERITRKILEIAPGDEGTLILLSNLYASTGKWKRVIEMKSKMKEMKLKK 584

Query: 572 VPGCSSIEVGSVVHEFLVGDKV-HPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
            P  S +E+    H F+ GD   HP S+ I E L+E+    +  G+V D S V  DM+E 
Sbjct: 585 NPAMSWVEIDKETHTFMAGDLFSHPNSEQILENLEELIKKAKDLGYVEDKSCVFQDMEET 644

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
            KE +L  HSEKLAIA+  +    G +IRI+KNLRVC +CHS  K++S+I  REII RD 
Sbjct: 645 AKERSLHQHSEKLAIAFA-VWRNVGGSIRILKNLRVCVDCHSWIKIVSRIIKREIICRDS 703

Query: 691 NRFHHFKDGNCSCNDYW 707
            RFHHF+DG+CSC DYW
Sbjct: 704 KRFHHFRDGSCSCGDYW 720



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 110/400 (27%), Positives = 201/400 (50%), Gaps = 20/400 (5%)

Query: 108 SSSPVVAI--KFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
           + SP ++I  +F +  I    +  T+TF  +L+ C    +IS  K I A +LK G   + 
Sbjct: 23  TCSPELSINSQFRLLCITCDSLTTTHTFSQLLRQCIDERSISGIKNIQAQMLKSGFPVE- 81

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
              + L++   + GE+  AR +F+    R  V++ ++I  Y       +A +++  M   
Sbjct: 82  LSGSKLVDASLKCGEIGYARQLFDGMPERHIVTWNSIIAYYIKHRRSKEAVEMYRLMI-- 139

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG-------SNLHVTNALIDMY 278
             N +P+E T+ +V  A + + SLE           HGL        SN+ V +AL+DMY
Sbjct: 140 SNNVLPDEYTLSSVFKAFSDL-SLEK-----EAQRSHGLAVILGLEVSNVFVGSALVDMY 193

Query: 279 SKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
            K G   +A+ + + +E++DV+    +I GY+   +  EA+  F+ ML   ++PN+ T+ 
Sbjct: 194 VKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYA 253

Query: 339 SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
           SVL +C  L  +  GK IH  + K+  + + ++  TSL+ MY +C  +  +  VF  + Y
Sbjct: 254 SVLISCGNLKDIGNGKLIHGLMVKSGFE-SALASQTSLLTMYLRCSLVDDSLLVFKCIKY 312

Query: 399 KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQY 458
               +W ++ISGL  +G+ + AL  F +M+ + ++P+  T    L  C++  + + GRQ 
Sbjct: 313 PNQVTWTSLISGLVQNGREETALIEFRKMMRDSVKPNSFTLSSALRGCSNLAMFEEGRQ- 371

Query: 459 FNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
            + ++  Y           +++L G+ G  D A  +  T+
Sbjct: 372 VHGIVSKYGFDRDKYAGSGLIELYGKCGCSDMARLVFDTL 411



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 161/328 (49%), Gaps = 21/328 (6%)

Query: 35  ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR 91
           ++L  C N+++I   K +H  ++K+G  +   + + L+ +       D S  LLVF+ I+
Sbjct: 254 SVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDS--LLVFKCIK 311

Query: 92  EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
            PNQV W ++I G   +     A+  + +M+     PN++T    L+ C+ ++   EG+Q
Sbjct: 312 YPNQVTWTSLISGLVQNGREETALIEFRKMMRDSVKPNSFTLSSALRGCSNLAMFEEGRQ 371

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
           +H  V K G + D +  + LI +Y + G  + ARLVF+  S  D +S   +I  YA  G+
Sbjct: 372 VHGIVSKYGFDRDKYAGSGLIELYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGF 431

Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
             +A +LF+ M        PN+ TV++VL AC + G +E G   C L +       + +T
Sbjct: 432 GREALELFERMI--NLGLQPNDVTVLSVLLACNNSGLVEEG---CELFDSFR-KDKIMLT 485

Query: 272 N----ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
           N     ++DM  + G L +A  L   +   D++ W  ++         + A  + R++L+
Sbjct: 486 NDHYACMVDMLGRAGRLEEAEMLITEVTNPDLVLWRTLLSACKVHRKVEMAERITRKILE 545

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKW 355
             I P D   L +L +  Y      GKW
Sbjct: 546 --IAPGDEGTL-ILLSNLYAST---GKW 567


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/608 (39%), Positives = 351/608 (57%), Gaps = 43/608 (7%)

Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ-NGELESARL-VFNKSSLR 194
           L  C  ++ I   KQ+HA +L  GL+   +V   LI    + N  ++   L +FN+ +  
Sbjct: 53  LDGCKNLTQI---KQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNYP 109

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
           +   Y ALI GY     L ++ + +  M  R+E  VP   T   +  AC     + LG  
Sbjct: 110 NPFLYNALIRGYLIEERLKESTEFYSLM--RKEGVVPVSFTFTALFKACGAKMDVGLGRQ 167

Query: 255 V--CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN--------- 303
           +   +++ G G G +LHV N++IDMY KCG L   R +F+ +  RDVISW          
Sbjct: 168 IHGQTILVG-GFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKS 226

Query: 304 ----------------------VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
                                 VM+ G+   +  +EA+M F +M +  +E +++T + V+
Sbjct: 227 GNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVI 286

Query: 342 PACAYLGALDLGKWIHAYIDKNH-QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT 400
            ACA LGA     WI    +K+     ++V + ++LIDMY+KCG++  A +VF GM  + 
Sbjct: 287 SACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERN 346

Query: 401 LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFN 460
           + S+++MI G AMHG+   A+ LF  M+   ++P+ +TF+GVL+AC+HAG+++ G Q F 
Sbjct: 347 VYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFE 406

Query: 461 AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRL 520
            M + Y I P   HY CMVDLLGRAG   EA  L+KTM ++P   +W +LLGACR+H   
Sbjct: 407 LMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSP 466

Query: 521 ELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEV 580
           ++    A HL ELEP   G Y+LL+N+YA  GRW+DV+T+R  +  +G++K P  S IE 
Sbjct: 467 DIAAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIES 526

Query: 581 -GSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHH 639
              +VHEF  GD  HP+S  I + L+++   LE  G+ P  S V YD+++E K   L  H
Sbjct: 527 EKGMVHEFFSGDMTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRILMTH 586

Query: 640 SEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDG 699
           SEKLA+A+GLIST PG+ IRIVKNLR+C +CHS     S+I  REII RD  RFHHF DG
Sbjct: 587 SEKLALAFGLISTIPGSKIRIVKNLRICEDCHSVICGASQITGREIIVRDIMRFHHFHDG 646

Query: 700 NCSCNDYW 707
            CSC ++W
Sbjct: 647 ICSCGNFW 654



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 125/417 (29%), Positives = 216/417 (51%), Gaps = 33/417 (7%)

Query: 37  LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQV 96
           L  C N+  IKQVH++I+  GL  + + L+KLI            Y L +F  +  PN  
Sbjct: 53  LDGCKNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNYPNPF 112

Query: 97  IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAH- 155
           ++N +IRG+ +      + +FY  M   G VP ++TF  + K+C     +  G+QIH   
Sbjct: 113 LYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQT 172

Query: 156 VLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDA 215
           +L  G   D  V  S+I+MY + G LE  R VF++   RD +S+T LI+ Y   G ++ A
Sbjct: 173 ILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESA 232

Query: 216 RQLFDEMPIRE------------ENFVPNES-----------------TVVTVLSACAHM 246
            +LFD +P+++            +N  P E+                 T++ V+SACA +
Sbjct: 233 GELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQL 292

Query: 247 GSLELGNWVCSLIEGHGLGS--NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
           G+ +  +W+  + E    G   ++ V +ALIDMYSKCG +  A  +F+ +++R+V S++ 
Sbjct: 293 GAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSS 352

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           MI G+       +A+ LF +M+++ I+PN VTF+ VL AC++ G ++ G  I   ++K +
Sbjct: 353 MILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCY 412

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMHGKADKA 420
               +   +T ++D+  + G ++ A ++   M  +     W A++    +H   D A
Sbjct: 413 GIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIA 469


>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 558

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/560 (41%), Positives = 355/560 (63%), Gaps = 10/560 (1%)

Query: 151 QIHAHVLKLGLESDPF-VHTSLINMYAQNGE-LESARLVFNKSSLRDAVSYTALITGYAS 208
           ++H +++K   ++DP  + T L++  A   E L  AR VF++    D ++Y  +I  + S
Sbjct: 6   RLHCYIIKSSKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTIIRSH-S 64

Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
           R +   +  LF    +R      +  T   VL AC+    L++   + SLI  +GL S++
Sbjct: 65  RFF--PSHSLFYFFSMRSNGIPLDNFTFPFVLKACSR---LQINLHLHSLIVKYGLDSDI 119

Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM-LQ 327
            V NALI +Y  CG L  A  +F+ + +RD +SW+ +I  + +     EAL LF +M L+
Sbjct: 120 FVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLE 179

Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
             + P++VT LSV+ A ++LG L+LG+W+ A+I +    ++ V+L T+LIDM+++CG+I 
Sbjct: 180 DKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGLGVS-VALGTALIDMFSRCGSID 238

Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
            +  VF+ M  + + +W A+I+GL +HG++ +AL++F  M   G+QPD +TF GVL AC+
Sbjct: 239 ESIVVFEKMAVRNVLTWTALINGLGVHGRSTEALAMFHSMRKSGVQPDYVTFSGVLVACS 298

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
           H GL+  G   F ++ + Y++ P L HYGCMVD+LGRAGL +EA   ++ M MKP++ IW
Sbjct: 299 HGGLVKEGWDIFESIRKVYRMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIW 358

Query: 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
            +LLGAC  H  L L E V   + ++     G  VLLSN+Y  AGRW + A+IR+++ +K
Sbjct: 359 RTLLGACVNHNNLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREK 418

Query: 568 GMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
            + K PGCSSI V   +HEF+ GD  HPQS+ I + L  I   L   G++  T  VL+D+
Sbjct: 419 RIGKEPGCSSINVDQTIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTKNVLHDI 478

Query: 628 DEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIA 687
           +EE +E +LS+HSEKLA+A+ ++S K   TIRI+KNLR+C +CHS  K IS  F R+II 
Sbjct: 479 EEEEREHSLSYHSEKLAVAFAILSMKDKRTIRIMKNLRICYDCHSFMKHISVRFERKIII 538

Query: 688 RDRNRFHHFKDGNCSCNDYW 707
           RDRNRFHHF+ G CSC+DYW
Sbjct: 539 RDRNRFHHFEKGLCSCHDYW 558



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 128/389 (32%), Positives = 217/389 (55%), Gaps = 9/389 (2%)

Query: 43  MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNII 102
           M N+ ++H  IIK+   N   +L  L+  C  +    LSYA  VF  I  P+ + +N II
Sbjct: 1   MNNVYRLHCYIIKSSKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTII 60

Query: 103 RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE 162
           R HS    P  ++ ++  M  +G   + +TFPF+LK+C+++        +H+ ++K GL+
Sbjct: 61  RSHS-RFFPSHSLFYFFSMRSNGIPLDNFTFPFVLKACSRLQI---NLHLHSLIVKYGLD 116

Query: 163 SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
           SD FV  +LI +Y   G LE A  VF++ S RD+VS++ +I  + + GY  +A  LF++M
Sbjct: 117 SDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKM 176

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
            + E+  VP+E T+++V+SA +H+G LELG WV + I   GLG ++ +  ALIDM+S+CG
Sbjct: 177 QL-EDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGLGVSVALGTALIDMFSRCG 235

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
            + ++  +FE +  R+V++W  +I G        EAL +F  M +S ++P+ VTF  VL 
Sbjct: 236 SIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTEALAMFHSMRKSGVQPDYVTFSGVLV 295

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           AC++ G +  G  I   I K ++    +  +  ++D+  + G +  A    + M  K  +
Sbjct: 296 ACSHGGLVKEGWDIFESIRKVYRMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNS 355

Query: 403 -SWNAMISGLAMH---GKADKALSLFSRM 427
             W  ++     H   G A+K  +  S++
Sbjct: 356 IIWRTLLGACVNHNNLGLAEKVKAKISKI 384



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 138/276 (50%), Gaps = 7/276 (2%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ 95
           +L  C+ +Q    +HS I+K GL +  F  + LI  C     G L  A+ VF+ + E + 
Sbjct: 93  VLKACSRLQINLHLHSLIVKYGLDSDIFVQNALI--CVYGYCGSLEMAVKVFDEMSERDS 150

Query: 96  VIWNNIIRGHSLSSSPVVAIKFYVRMILSG-FVPNTYTFPFILKSCAKISAISEGKQIHA 154
           V W+ +I     +     A+  + +M L    VP+  T   ++ + + +  +  G+ + A
Sbjct: 151 VSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRA 210

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
            + +LGL     + T+LI+M+++ G ++ + +VF K ++R+ +++TALI G    G   +
Sbjct: 211 FIGRLGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTE 270

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVTNA 273
           A  +F  M  R+    P+  T   VL AC+H G ++ G +   S+ + + +   L     
Sbjct: 271 ALAMFHSM--RKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYRMDPLLDHYGC 328

Query: 274 LIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGG 308
           ++D+  + G L +A D  E +  K + I W  ++G 
Sbjct: 329 MVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGA 364


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/608 (39%), Positives = 350/608 (57%), Gaps = 41/608 (6%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR--LVFNKSSL 193
           IL  C   S I   KQ+HAH+++ GL    +V T LI M  +      +   LVF + + 
Sbjct: 48  ILHDCTLFSQI---KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNY 104

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
            +   +TA+I GYA +G L ++   +  M  R +   P   T   +  AC    +++LG 
Sbjct: 105 PNPFLWTAMIRGYALQGLLSESTNFYTRM--RRDGVGPVSFTFSALFKACGAALNMDLGK 162

Query: 254 WV-CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN--------- 303
            V    I   G  S+L+V N++ID+Y KCG L  AR +F+ + +RDV+SW          
Sbjct: 163 QVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKY 222

Query: 304 ----------------------VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
                                  M+ GY      KEAL  F++M    +E ++VT   V+
Sbjct: 223 GDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVI 282

Query: 342 PACAYLGALDLGKWIHAYIDKN-HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT 400
            ACA LGA+    WI    +++      NV + ++LIDMY+KCG+   A +VF+ M  + 
Sbjct: 283 SACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERN 342

Query: 401 LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFN 460
           + S+++MI G AMHG+A  AL LF  M+   ++P+ +TF+G+LSAC+HAGL++ GRQ F 
Sbjct: 343 VFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFA 402

Query: 461 AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRL 520
            M + + ++P   HY CMVDLLGRAG  +EA  L+KTM M+P+  +W +LLGACR+HG  
Sbjct: 403 KMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNP 462

Query: 521 ELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIE- 579
           ++ +  A  L +LEP   G Y+LLSN+YA AGRW++V+ +R  + +KG KK PGCS  E 
Sbjct: 463 DIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEG 522

Query: 580 VGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHH 639
               +H+F  GD  HP+S  I + L ++   L   G+ P+     YD+ ++ KE  L  H
Sbjct: 523 KNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSH 582

Query: 640 SEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDG 699
           SEKLA+AYGL+ T+ G TI+I+KN+R+C +CH+     S+I  REII RD  RFHHF +G
Sbjct: 583 SEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNG 642

Query: 700 NCSCNDYW 707
            CSC ++W
Sbjct: 643 TCSCGNFW 650



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 144/436 (33%), Positives = 227/436 (52%), Gaps = 39/436 (8%)

Query: 24  PYKLLQNQPSL------ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF 77
           P+  LQ+Q  L      ++L  CT    IKQVH+ II+ GL    + L+KLI +      
Sbjct: 30  PFPQLQHQRKLLEWRLMSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDV 89

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
              SY LLVF  +  PN  +W  +IRG++L      +  FY RM   G  P ++TF  + 
Sbjct: 90  PMGSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALF 149

Query: 138 KSCAKISAISEGKQIHAHVLKL-GLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           K+C     +  GKQ+HA  + + G  SD +V  S+I++Y + G L  AR VF++ S RD 
Sbjct: 150 KACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDV 209

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIRE------------ENFVPNES---------- 234
           VS+T LI  YA  G ++ A  LFD++P+++            +N  P E+          
Sbjct: 210 VSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDV 269

Query: 235 -------TVVTVLSACAHMGSLELGNWVCSLIEGHGLG--SNLHVTNALIDMYSKCGDLV 285
                  T+  V+SACA +G+++  NW+  + E  G G   N+ V +ALIDMYSKCG   
Sbjct: 270 GMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPD 329

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
           +A  +FE +++R+V S++ MI GY        AL LF  ML++ I PN VTF+ +L AC+
Sbjct: 330 EAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACS 389

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-W 404
           + G ++ G+ + A ++K      +   +  ++D+  + G ++ A  +   M  +     W
Sbjct: 390 HAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVW 449

Query: 405 NAMISGLAMHGKADKA 420
            A++    +HG  D A
Sbjct: 450 GALLGACRIHGNPDIA 465


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/608 (39%), Positives = 350/608 (57%), Gaps = 41/608 (6%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESAR--LVFNKSSL 193
           IL  C   S I   KQ+HAH+++ GL    +V T LI M  +      +   LVF + + 
Sbjct: 48  ILHDCTLFSQI---KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNY 104

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
            +   +TA+I GYA +G L ++   +  M  R +   P   T   +  AC    +++LG 
Sbjct: 105 PNPFLWTAMIRGYALQGLLSESTNFYTRM--RRDGVGPVSFTFSALFKACGAALNMDLGK 162

Query: 254 WV-CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN--------- 303
            V    I   G  S+L+V N++ID+Y KCG L  AR +F+ + +RDV+SW          
Sbjct: 163 QVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKY 222

Query: 304 ----------------------VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341
                                  M+ GY      KEAL  F++M    +E ++VT   V+
Sbjct: 223 GDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVI 282

Query: 342 PACAYLGALDLGKWIHAYIDKN-HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT 400
            ACA LGA+    WI    +++      NV + ++LIDMY+KCG+   A +VF+ M  + 
Sbjct: 283 SACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERN 342

Query: 401 LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFN 460
           + S+++MI G AMHG+A  AL LF  M+   ++P+ +TF+G+LSAC+HAGL++ GRQ F 
Sbjct: 343 VFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFA 402

Query: 461 AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRL 520
            M + + ++P   HY CMVDLLGRAG  +EA  L+KTM M+P+  +W +LLGACR+HG  
Sbjct: 403 KMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNP 462

Query: 521 ELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIE- 579
           ++ +  A  L +LEP   G Y+LLSN+YA AGRW++V+ +R  + +KG KK PGCS  E 
Sbjct: 463 DIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEG 522

Query: 580 VGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHH 639
               +H+F  GD  HP+S  I + L ++   L   G+ P+     YD+ ++ KE  L  H
Sbjct: 523 KNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSH 582

Query: 640 SEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDG 699
           SEKLA+AYGL+ T+ G TI+I+KN+R+C +CH+     S+I  REII RD  RFHHF +G
Sbjct: 583 SEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNG 642

Query: 700 NCSCNDYW 707
            CSC ++W
Sbjct: 643 TCSCGNFW 650



 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 144/436 (33%), Positives = 226/436 (51%), Gaps = 39/436 (8%)

Query: 24  PYKLLQNQPSL------ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF 77
           P+  LQ+Q  L      ++L  CT    IKQVH+ II+ GL    + L+KLI +      
Sbjct: 30  PFPQLQHQRKLLEWRLMSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDV 89

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
              SY LLVF  +  PN  +W  +IRG++L      +  FY RM   G  P ++TF  + 
Sbjct: 90  PMGSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALF 149

Query: 138 KSCAKISAISEGKQIHAHVLKL-GLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
           K+C     +  GKQ+HA  + + G  SD +V  S+I++Y + G L  AR VF++ S RD 
Sbjct: 150 KACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDV 209

Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIRE------------ENFVPNES---------- 234
           VS+T LI  YA  G ++ A  LFD++P ++            +N  P E+          
Sbjct: 210 VSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDV 269

Query: 235 -------TVVTVLSACAHMGSLELGNWVCSLIEGHGLG--SNLHVTNALIDMYSKCGDLV 285
                  T+  V+SACA +G+++  NW+  + E  G G   N+ V +ALIDMYSKCG   
Sbjct: 270 GMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPD 329

Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
           +A  +FE +++R+V S++ MI GY        AL LF  ML++ I PN VTF+ +L AC+
Sbjct: 330 EAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACS 389

Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-W 404
           + G ++ G+ + A ++K      +   +  ++D+  + G ++ A  +   M  +     W
Sbjct: 390 HAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVW 449

Query: 405 NAMISGLAMHGKADKA 420
            A++    +HG  D A
Sbjct: 450 GALLGACRIHGNPDIA 465


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/558 (39%), Positives = 351/558 (62%), Gaps = 5/558 (0%)

Query: 126 FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG-LESDPFVHTSLINMYAQNGELESA 184
            VP+   +  +LK C ++  + +G+ +HAH++    L++   +   ++NMYA+ G L+ A
Sbjct: 83  LVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDA 142

Query: 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244
           R +F++   +D V++TALI G++      DA  LF +M        PN  T+ ++L A  
Sbjct: 143 RRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQM--LRLGLQPNHFTLSSLLKASG 200

Query: 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304
               L+ G  + +    +G  S+++V +AL+DMY++CG +  A+  F+ +  +  +SWN 
Sbjct: 201 SEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNA 260

Query: 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNH 364
           +I G+    + + AL L  +M + N +P   T+ SV  ACA +GAL+ GKW+HA++ K+ 
Sbjct: 261 LISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSG 320

Query: 365 QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF 424
            KL    +  +L+DMYAK G+I  A++VFD +    + SWN M++G A HG   + L  F
Sbjct: 321 LKLIAF-IGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRF 379

Query: 425 SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484
            +M+  G++P++I+F+ VL+AC+H+GLLD G  YF  M + YK+ P + HY   VDLLGR
Sbjct: 380 EQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLLGR 438

Query: 485 AGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL 544
            GL D AE  ++ M ++P AA+W +LLGACR+H  +ELG   A+   EL+P + G  +LL
Sbjct: 439 VGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLL 498

Query: 545 SNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEML 604
           SN+YA AGRW DVA +R  + + G+KK P CS +E+ + VH F+  D+ HPQ K I    
Sbjct: 499 SNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPQIKEIRGKW 558

Query: 605 DEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNL 664
           +EI   +++ G+VPDTS VL  +D++ +E  L +HSEKLA+A+ L++T  G+ IRI KN+
Sbjct: 559 EEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNI 618

Query: 665 RVCGNCHSATKLISKIFN 682
           RVCG+CH+A K +SKI+ 
Sbjct: 619 RVCGDCHAAIKFVSKIYE 636



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 123/383 (32%), Positives = 208/383 (54%), Gaps = 8/383 (2%)

Query: 36  LLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LL +CT +  ++Q   VH+ ++ +   +    L  +I +   +  G L  A  +F+ +  
Sbjct: 93  LLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNII-VNMYAKCGCLDDARRMFDEMPT 151

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V W  +I G S ++ P  A+  + +M+  G  PN +T   +LK+      +  G Q+
Sbjct: 152 KDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQL 211

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           HA  LK G +S  +V ++L++MYA+ G +++A+L F+    +  VS+ ALI+G+A +G  
Sbjct: 212 HAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEG 271

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
           + A  L  +M  + +NF P   T  +V SACA +G+LE G WV + +   GL     + N
Sbjct: 272 EHALHLLWKM--QRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGN 329

Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
            L+DMY+K G +  A+ +F+ + K DV+SWN M+ G       KE L  F QML+  IEP
Sbjct: 330 TLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEP 389

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           N+++FL VL AC++ G LD G +    + K ++   +V  + + +D+  + G +  AE+ 
Sbjct: 390 NEISFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLLGRVGLLDRAERF 448

Query: 393 FDGMGYK-TLASWNAMISGLAMH 414
              M  + T A W A++    MH
Sbjct: 449 IREMPIEPTAAVWGALLGACRMH 471



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 125/288 (43%), Gaps = 38/288 (13%)

Query: 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
           SD    L     + + ++ P+   +  +L  C  LG ++ G+ +HA++  +H   N++ L
Sbjct: 66  SDGGTGLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVL 125

Query: 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432
              +++MYAKCG +  A ++FD M  K + +W A+I+G + + +   AL LF +M+  GL
Sbjct: 126 QNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGL 185

Query: 433 QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492
           QP+  T   +L A      LD G Q  +A    Y     +     +VD+  R G  D A+
Sbjct: 186 QPNHFTLSSLLKASGSEHGLDPGTQ-LHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQ 244

Query: 493 ALLKTMEMK----------------------------------PDAAIWTSLLGACRVHG 518
                M  K                                  P    ++S+  AC   G
Sbjct: 245 LAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIG 304

Query: 519 RLELGESVAKHLLELEPENPGAYV--LLSNMYAGAGRWDDVATIRTRL 564
            LE G+ V  H+++       A++   L +MYA AG  DD   +  RL
Sbjct: 305 ALEQGKWVHAHMIK-SGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL 351


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 248/639 (38%), Positives = 380/639 (59%), Gaps = 24/639 (3%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR-E 92
           L+LL +C + + ++Q+H+Q     +H     LS+ I +       D +Y+ L+F  I   
Sbjct: 25  LSLLKQCPSTKTLQQIHTQFTIHSIHKPNHLLSQSISL------KDFTYSTLIFSHITPH 78

Query: 93  PNQVIWNNIIRGHSLSSSPV-VAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           PN   +N ++R  + +     + +  Y +M      PN +TFPF+  +CA +  I   + 
Sbjct: 79  PNDYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARL 138

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
            H  V KLGL++D     S++ MY + GE   AR VF++ + +D VS+ +L++GYA  G+
Sbjct: 139 AHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGF 198

Query: 212 LDDARQLFDEMPIREEN-FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
             +A ++F  +  REE+ F P+E ++V+VL AC  +G LELG WV   +   G+  N ++
Sbjct: 199 AREAVEVFGRL--REESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYI 256

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            +ALI MYSKCG+LV +R +F+ +  RD I+WN  I  Y       EA+ LF  M ++ +
Sbjct: 257 GSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGV 316

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL-NNVSLWTSLIDMYAKCGNIKAA 389
           +PN VT  +VL ACA +GALDLGK +  Y    H+ L +++ + T+LIDMYAKCG++++A
Sbjct: 317 DPNKVTLTAVLSACASIGALDLGKQMDEY--ATHRGLQHDIFVATALIDMYAKCGSLESA 374

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG--LQPDDITFVGVLSACN 447
           ++VF+ M  K  ASWNAMIS LA HGKA +ALSLF RM  EG   +P+DITFV +LSAC 
Sbjct: 375 QRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACV 434

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
           HAGL+D G + F+ M   + + PK++HY CMVDLL RAG   EA  +++ M  KPD    
Sbjct: 435 HAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTL 494

Query: 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
            +L  AC+    +++GE V + LLEL+P N G Y++ S +Y     WDD A +R  + + 
Sbjct: 495 GALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMREN 554

Query: 568 GMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
           G+ K PGCS IEVG+ + EFL GD +   S  +  ++D +   L+K G++       Y +
Sbjct: 555 GVTKTPGCSWIEVGNQLREFLSGDGLTLDSIDVRNIIDLLYEELKKEGYLS------YWI 608

Query: 628 DEEWKEGALSHH--SEKLAIAYGLISTKPGTTIRIVKNL 664
             +W++  L H   S +L I+  L+S+   ++  I  +L
Sbjct: 609 LPKWQDWTLRHSSVSAQLFISVELVSSGRASSFYISYSL 647


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/609 (38%), Positives = 351/609 (57%), Gaps = 65/609 (10%)

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           ++IHAH+L  G  + P  H   +   A +  L  ARL+  +      +++  L+   A  
Sbjct: 34  REIHAHLLVSGRLASPSHHADFVASLASSSHLSYARLLLPQRPA-TLLAHNGLLRALARG 92

Query: 210 GYLDDARQLFDEMPIREENF--------------------VPNESTVVTVLSACAHMGSL 249
                A   F E+P+  +++                    VP +   V +L+   H  + 
Sbjct: 93  PCPGLAFAAFRELPLAPDHYSFTFLVRAATSLAAAASATPVPTD-VAVNLLAGSVHAAAF 151

Query: 250 ELGNWVCSLIEGHGLGSNLHVTNALIDMY------------------------------- 278
           +           HG  ++ HV +  + MY                               
Sbjct: 152 Q-----------HGHATDPHVQSGAVSMYAAVGDVGAVRAAFAEIVSPDVVCVTAMLGAL 200

Query: 279 SKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
           S  GD+  AR+LF+ + +RD ++WN M+ GY      +EAL LF +M ++ +  ++VT +
Sbjct: 201 SAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLV 260

Query: 339 SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
           SVL ACA +GAL+ G W+H+Y+     +++ V+L T+L+DMY+KCG +  + +VF+ M  
Sbjct: 261 SVLTACAQMGALERGMWVHSYVCSRGMRVS-VTLGTALVDMYSKCGVVTMSMEVFETMRE 319

Query: 399 KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQY 458
           + + +W + +SGLAM+G  ++ L LF RM   G++P+ +TFV VL  C+ AGL++ GR  
Sbjct: 320 RNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRAC 379

Query: 459 FNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHG 518
           F++M   +K+ P L+HYGCMVDL GRAG  D+A   + +M ++P   +W +LL A R+H 
Sbjct: 380 FDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGALLNASRIHN 439

Query: 519 RLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSI 578
            ++LG+     L E+E +N  A+VLLSN+YA +  W  V+ +R  +  KG+KK+PGCS+I
Sbjct: 440 NVDLGKHAMHKLTEIESKNDAAHVLLSNIYAESHNWKGVSKVRNMMKSKGVKKMPGCSAI 499

Query: 579 EVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSH 638
           EV   VHEF VG K HP+ K I  ML E+   L   G+  +T EVL+D++EE KEGA+S 
Sbjct: 500 EVDGKVHEFFVGSKSHPRYKDIQTMLAEMSHRLRLQGYAANTKEVLFDIEEEEKEGAISL 559

Query: 639 HSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKD 698
           HSEKLA+A+GLI+    T IRIVKNLRVC +CH  TKLISK+F+REI+ RDRNRFHHFK 
Sbjct: 560 HSEKLALAFGLITLPEDTVIRIVKNLRVCKDCHDYTKLISKVFDREIVMRDRNRFHHFKH 619

Query: 699 GNCSCNDYW 707
           G CSC DYW
Sbjct: 620 GACSCRDYW 628



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 107/435 (24%), Positives = 205/435 (47%), Gaps = 60/435 (13%)

Query: 32  PSLALLSKCTNMQNIKQVHSQIIKTGL-----HNTQFALSKLIEICAVSPFGDLSYALLV 86
           PSL   S  +  + ++++H+ ++ +G      H+  F       + +++    LSYA L+
Sbjct: 20  PSLVAASSQSQFR-LREIHAHLLVSGRLASPSHHADF-------VASLASSSHLSYARLL 71

Query: 87  FETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAI 146
               R    +  N ++R  +    P +A   +  + L+   P+ Y+F F++++   ++A 
Sbjct: 72  LPQ-RPATLLAHNGLLRALARGPCPGLAFAAFRELPLA---PDHYSFTFLVRAATSLAAA 127

Query: 147 SE-------------GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL 193
           +                 +HA   + G  +DP V +  ++MYA  G++ + R  F +   
Sbjct: 128 ASATPVPTDVAVNLLAGSVHAAAFQHGHATDPHVQSGAVSMYAAVGDVGAVRAAFAEIVS 187

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREE-------------------------- 227
            D V  TA++   ++ G +D AR+LFD MP R+                           
Sbjct: 188 PDVVCVTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEM 247

Query: 228 ---NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284
                  +E T+V+VL+ACA MG+LE G WV S +   G+  ++ +  AL+DMYSKCG +
Sbjct: 248 QKAGVAVSEVTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVV 307

Query: 285 VKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
             + ++FE++ +R++ +W   + G       +E L LF++M  + +EPN VTF++VL  C
Sbjct: 308 TMSMEVFETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGC 367

Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS- 403
           +  G ++ G+     +   H+    +  +  ++D+Y + G +  A    + M  +     
Sbjct: 368 SVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEGV 427

Query: 404 WNAMISGLAMHGKAD 418
           W A+++   +H   D
Sbjct: 428 WGALLNASRIHNNVD 442


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/658 (37%), Positives = 377/658 (57%), Gaps = 9/658 (1%)

Query: 36  LLSKCTNM--QN-IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE 92
           LL  C +   QN + QVH+  +K G     F     + + +      L  A ++FE I +
Sbjct: 147 LLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILD 206

Query: 93  PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152
            + V +N +I G+        AI  +++M  SG  P+ +TF  +LK+   +   + G+Q+
Sbjct: 207 KDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQL 266

Query: 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212
           H   +  G   D  V   +++ Y+++  +   R +FN+    D VSY  +I+ Y+     
Sbjct: 267 HGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQY 326

Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV-CSLIEGHGLGSNLHVT 271
           +++  LF EM      F        T+LS  A++ SL++G  V C  I      S LHV 
Sbjct: 327 EESLNLFREMQCM--GFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATA-DSILHVG 383

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N+L+DMY+KC    +A  +F+S+ +R  +SW  +I GY     +   L LF +M  +N+ 
Sbjct: 384 NSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLR 443

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
            +  TF +VL A A   +L LGK +HA+I ++   L NV   + L+DMYAKCG+IK A Q
Sbjct: 444 ADQSTFATVLKASAGFASLLLGKQLHAFIIRSGN-LENVFSGSGLVDMYAKCGSIKDAVQ 502

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           VF+ M  +   SWNA+IS  A +G  + A+  F++MI  GLQPD ++ +GVL AC+H G 
Sbjct: 503 VFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACSHCGF 562

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
           ++ G ++F AM   Y I+PK +HY CM+DLLGR G F EAE L+  M  +PD  +W+S+L
Sbjct: 563 VEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVL 622

Query: 512 GACRVHGRLELGESVAKHLLELEP-ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
            ACR++    L E  A+ L  +E   +  AYV +SN+YA AG+W++V  ++  + ++G+K
Sbjct: 623 NACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAAAGKWENVRHVKKAMRERGIK 682

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
           KVP  S +EV   +H F   D+ HP    I + ++E+   +E+ G+ PDTS V+ D+DE+
Sbjct: 683 KVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVKKINELTTEIEREGYKPDTSSVVQDIDEQ 742

Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIAR 688
            K  +L +HSE+LA+A+ LIST  G  I ++KNLR C +CH+A KLISKI  R I  +
Sbjct: 743 MKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKRVITTQ 800



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 128/442 (28%), Positives = 215/442 (48%), Gaps = 15/442 (3%)

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
           GDLS A  +F+ + +   V W  ++  ++ ++    A K + +M  S  +P+  TF  +L
Sbjct: 89  GDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLL 148

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPF--VHTSLINMYAQNGELESARLVFNKSSLRD 195
             C      +   Q+HA  +KLG +++ F  V   L+  Y +   L+ A ++F +   +D
Sbjct: 149 PGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKD 208

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
           +V++  LITGY   G   +A  LF +M  R+    P++ T   VL A   +    LG  +
Sbjct: 209 SVTFNTLITGYEKDGLYTEAIHLFLKM--RQSGHKPSDFTFSGVLKAVVGLHDFALGQQL 266

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
             L    G   +  V N ++  YSK   +++ R+LF  + + D +S+NV+I  Y+    Y
Sbjct: 267 HGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQY 326

Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH--AYIDKNHQKLNNVSLW 373
           +E+L LFR+M     +  +  F ++L   A L +L +G+ +H  A +      L+   + 
Sbjct: 327 EESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATADSILH---VG 383

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
            SL+DMYAKC     AE +F  +  ++  SW A+ISG    G     L LF++M G  L+
Sbjct: 384 NSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLR 443

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
            D  TF  VL A      L +G+Q    +I+   +       G +VD+  + G   +A  
Sbjct: 444 ADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSG-LVDMYAKCGSIKDA-- 500

Query: 494 LLKTMEMKPD--AAIWTSLLGA 513
            ++  E  PD  A  W +L+ A
Sbjct: 501 -VQVFEEMPDRNAVSWNALISA 521



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 131/540 (24%), Positives = 233/540 (43%), Gaps = 40/540 (7%)

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           N+V    +     L   P    +   R+I +GF  +T    F ++   +   +S   +++
Sbjct: 8   NEVRSRTLATLRQLRQPPPATRRVDARIIKTGFNTDTCRSNFTVEDLLRRGQVSAALKVY 67

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
             +       +     ++I+ Y + G+L SAR +F+    R  V++T L+  YA   + D
Sbjct: 68  DEMP----HKNTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFD 123

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT-- 271
           +A +LF +M       +P+  T  T+L  C           V +     G  +NL +T  
Sbjct: 124 EAFKLFRQMC--RSCTLPDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVC 181

Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
           N L+  Y +   L  A  LFE I  +D +++N +I GY     Y EA+ LF +M QS  +
Sbjct: 182 NVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHK 241

Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
           P+D TF  VL A   L    LG+ +H  +        + S+   ++  Y+K   +     
Sbjct: 242 PSDFTFSGVLKAVVGLHDFALGQQLHG-LSVTTGFSRDASVGNQILHFYSKHDRVLETRN 300

Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
           +F+ M      S+N +IS  +   + +++L+LF  M   G    +  F  +LS   +   
Sbjct: 301 LFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSS 360

Query: 452 LDIGRQYFNAMIQDYKISPKLQHYG-CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
           L +GRQ     I     +  + H G  +VD+  +  +FDEAE + K++  +   + WT+L
Sbjct: 361 LQVGRQVHCQAI--VATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVS-WTAL 417

Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
                + G ++ G               GA + L     GA    D +T  T L     K
Sbjct: 418 -----ISGYVQKGLH-------------GAGLKLFTKMRGANLRADQSTFATVL-----K 454

Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
              G +S+ +G  +H F++        ++++     +D +  K G + D  +V  +M + 
Sbjct: 455 ASAGFASLLLGKQLHAFIIRSG---NLENVFSGSGLVD-MYAKCGSIKDAVQVFEEMPDR 510


>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
 gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
          Length = 631

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/612 (37%), Positives = 350/612 (57%), Gaps = 4/612 (0%)

Query: 96  VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAH 155
           V W  +I G   +     A+ ++ +M      PN +TFP   K+   +     GKQIHA 
Sbjct: 24  VTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFTFPCAFKASTALCLPFAGKQIHAI 83

Query: 156 VLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDA 215
            LKLG  +D FV  S  +MY++ G    A+ +F++   R+   + A I+     G    A
Sbjct: 84  ALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNVAVWNAYISNAVLDGRPGKA 143

Query: 216 RQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALI 275
              F E   R     P+  T    L+ACA    L+LG  +  L+   G   ++ V N +I
Sbjct: 144 IDKFIE--FRRVGGEPDLITFCAFLNACADARCLDLGRQLHGLVIRSGFEGDVSVANGII 201

Query: 276 DMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV 335
           D+Y KC ++  A  +F  + +R+ +SW  M+       + ++A ++F    +  IE  D 
Sbjct: 202 DVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGRKEGIELTDY 261

Query: 336 TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
              SV+ A A +  L+ G+ +HA   K   +  ++ + ++L+DMY KCG+I+  EQVF  
Sbjct: 262 MVSSVISAYAGISGLEFGRSVHALAVKACVE-GDIFVGSALVDMYGKCGSIEDCEQVFHE 320

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
           M  + L SWNAMISG A  G  D A++LF  M  E +  + +T + VLSAC+  G + +G
Sbjct: 321 MPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQSEAV-ANYVTLICVLSACSRGGAVKLG 379

Query: 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACR 515
            + F +M   Y+I P  +HY C+ D+LGRAG+ + A   ++ M ++P  ++W +LL ACR
Sbjct: 380 NEIFESMRDRYRIEPGAEHYACIADMLGRAGMVERAYEFVQKMPIRPTISVWGALLNACR 439

Query: 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGC 575
           V+G  ELG+  A +L +L+P++ G +VLLSNM+A AGRWD+   +R  + D G+KK  GC
Sbjct: 440 VYGEPELGKIAADNLFKLDPKDSGNHVLLSNMFAAAGRWDEATLVRKEMKDVGIKKGAGC 499

Query: 576 SSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGA 635
           S +   + VH F   D  H ++  I  ML ++   ++ +G++PDT+  LYD++EE K   
Sbjct: 500 SWVTAKNKVHVFQAKDTSHERNSEIQAMLVKLRTEMQAAGYMPDTNYALYDLEEEEKMTE 559

Query: 636 LSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHH 695
           + +HSEK+A+A+GLI+  PG  IRI KNLR+CG+CHSA K IS I  REII RD NRFH 
Sbjct: 560 VGYHSEKIALAFGLIALPPGVPIRITKNLRICGDCHSAFKFISGIVGREIIVRDNNRFHR 619

Query: 696 FKDGNCSCNDYW 707
           F+D  CSC D+W
Sbjct: 620 FRDSQCSCRDFW 631



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 106/373 (28%), Positives = 181/373 (48%), Gaps = 6/373 (1%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           KQ+H+  +K G  N +F      ++   S  G    A  +F+ +   N  +WN  I    
Sbjct: 78  KQIHAIALKLGQINDKFVGCSAFDM--YSKTGLKFEAQRLFDEMPPRNVAVWNAYISNAV 135

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
           L   P  AI  ++     G  P+  TF   L +CA    +  G+Q+H  V++ G E D  
Sbjct: 136 LDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQLHGLVIRSGFEGDVS 195

Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
           V   +I++Y +  E+E A +VFN    R++VS+  ++         + A  +F  +  R+
Sbjct: 196 VANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVF--LMGRK 253

Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
           E     +  V +V+SA A +  LE G  V +L     +  ++ V +AL+DMY KCG +  
Sbjct: 254 EGIELTDYMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIED 313

Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
              +F  + +R+++SWN MI GY H  D   A+ LF +M QS    N VT + VL AC+ 
Sbjct: 314 CEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEM-QSEAVANYVTLICVLSACSR 372

Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-TLASWN 405
            GA+ LG  I   +   ++       +  + DM  + G ++ A +    M  + T++ W 
Sbjct: 373 GGAVKLGNEIFESMRDRYRIEPGAEHYACIADMLGRAGMVERAYEFVQKMPIRPTISVWG 432

Query: 406 AMISGLAMHGKAD 418
           A+++   ++G+ +
Sbjct: 433 ALLNACRVYGEPE 445



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/416 (26%), Positives = 189/416 (45%), Gaps = 43/416 (10%)

Query: 174 MYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
           MY++      A+L+   +  R  V++TALI+G    GY   A   F +M  R EN  PN+
Sbjct: 1   MYSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKM--RRENIKPND 58

Query: 234 STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293
            T      A   +     G  + ++    G  ++  V  +  DMYSK G   +A+ LF+ 
Sbjct: 59  FTFPCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDE 118

Query: 294 IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353
           +  R+V  WN  I          +A+  F +  +   EP+ +TF + L ACA    LDLG
Sbjct: 119 MPPRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLG 178

Query: 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAM 413
           + +H  + ++  +  +VS+   +ID+Y KC  ++ AE VF+GMG +   SW  M++    
Sbjct: 179 RQLHGLVIRSGFE-GDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQ 237

Query: 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL--LDIGRQYFNAMIQDYKISPK 471
           + + +KA  +F     EG++  D     V+SA  +AG+  L+ GR   +A+     +   
Sbjct: 238 NDEKEKACVVFLMGRKEGIELTDYMVSSVISA--YAGISGLEFGRS-VHALAVKACVEGD 294

Query: 472 LQHYGCMVDLLGRAGLFDEAEALLKTM-----------------------------EMKP 502
           +     +VD+ G+ G  ++ E +   M                             EM+ 
Sbjct: 295 IFVGSALVDMYGKCGSIEDCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQS 354

Query: 503 DA-AIWTSL---LGACRVHGRLELGESVAKHLLELEPENPGA--YVLLSNMYAGAG 552
           +A A + +L   L AC   G ++LG  + + + +     PGA  Y  +++M   AG
Sbjct: 355 EAVANYVTLICVLSACSRGGAVKLGNEIFESMRDRYRIEPGAEHYACIADMLGRAG 410



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 143/291 (49%), Gaps = 14/291 (4%)

Query: 25  YKLLQNQPSL----ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPF 77
           ++ +  +P L    A L+ C + + +   +Q+H  +I++G        + +I++      
Sbjct: 150 FRRVGGEPDLITFCAFLNACADARCLDLGRQLHGLVIRSGFEGDVSVANGIIDV--YGKC 207

Query: 78  GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFIL 137
            ++  A +VF  +   N V W  ++     +     A   ++     G     Y    ++
Sbjct: 208 KEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGRKEGIELTDYMVSSVI 267

Query: 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197
            + A IS +  G+ +HA  +K  +E D FV ++L++MY + G +E    VF++   R+ V
Sbjct: 268 SAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPERNLV 327

Query: 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC- 256
           S+ A+I+GYA +G +D A  LF+EM   +   V N  T++ VLSAC+  G+++LGN +  
Sbjct: 328 SWNAMISGYAHQGDVDMAMTLFEEM---QSEAVANYVTLICVLSACSRGGAVKLGNEIFE 384

Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVIS-WNVMI 306
           S+ + + +         + DM  + G + +A +  + +  R  IS W  ++
Sbjct: 385 SMRDRYRIEPGAEHYACIADMLGRAGMVERAYEFVQKMPIRPTISVWGALL 435


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/560 (41%), Positives = 345/560 (61%), Gaps = 5/560 (0%)

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASR 209
           K+IHA VL+ G      + T L+      G++  AR VF++        +  L  GY   
Sbjct: 28  KKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRN 87

Query: 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269
               ++  L+ +M  R+    P+E T   V+ A + +G    G  + + +  +G G    
Sbjct: 88  QLPFESLLLYKKM--RDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGI 145

Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           V   L+ MY K G+L  A  LFES++ +D+++WN  +     T +   AL  F +M    
Sbjct: 146 VATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADA 205

Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
           ++ +  T +S+L AC  LG+L++G+ I+    K     N + +  + +DM+ KCGN +AA
Sbjct: 206 VQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCN-IIVENARLDMHLKCGNTEAA 264

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
             +F+ M  + + SW+ MI G AM+G + +AL+LF+ M  EGL+P+ +TF+GVLSAC+HA
Sbjct: 265 RVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHA 324

Query: 450 GLLDIGRQYFNAMIQ--DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
           GL++ G++YF+ M+Q  D  + P+ +HY CMVDLLGR+GL +EA   +K M ++PD  IW
Sbjct: 325 GLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIW 384

Query: 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
            +LLGAC VH  + LG+ VA  L+E  P+    +VLLSN+YA AG+WD V  +R+++   
Sbjct: 385 GALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKL 444

Query: 568 GMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM 627
           G KKV   SS+E    +H F  GDK HPQSK IYE LDEI   + K G+VPDT  V +D+
Sbjct: 445 GTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDV 504

Query: 628 DEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIA 687
           + E KE +LSHHSEKLAIA+GLI  +PG  IR++KNLR C +CH+ +K +S + + EII 
Sbjct: 505 EMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIM 564

Query: 688 RDRNRFHHFKDGNCSCNDYW 707
           RD+NRFHHF++G CSC ++W
Sbjct: 565 RDKNRFHHFRNGVCSCKEFW 584



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 118/374 (31%), Positives = 201/374 (53%), Gaps = 7/374 (1%)

Query: 44  QNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIR 103
           + +K++H+ +++TG       L++L+E   V   GD+ YA  VF+ + +P   +WN + +
Sbjct: 25  KQLKKIHAIVLRTGFSEKNSLLTQLLENLVV--IGDMCYARQVFDEMHKPRIFLWNTLFK 82

Query: 104 GHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLES 163
           G+  +  P  ++  Y +M   G  P+ +T+PF++K+ +++   S G  +HAHV+K G   
Sbjct: 83  GYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGC 142

Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
              V T L+ MY + GEL SA  +F    ++D V++ A +      G    A + F++M 
Sbjct: 143 LGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMC 202

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
                F  +  TVV++LSAC  +GSLE+G  +        +  N+ V NA +DM+ KCG+
Sbjct: 203 ADAVQF--DSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGN 260

Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
              AR LFE +++R+V+SW+ MI GY    D +EAL LF  M    + PN VTFL VL A
Sbjct: 261 TEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSA 320

Query: 344 CAYLGALDLGK-WIHAYIDKNHQKLN-NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-T 400
           C++ G ++ GK +    +  N + L      +  ++D+  + G ++ A +    M  +  
Sbjct: 321 CSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPD 380

Query: 401 LASWNAMISGLAMH 414
              W A++   A+H
Sbjct: 381 TGIWGALLGACAVH 394


>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
 gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
 gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
          Length = 604

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/485 (44%), Positives = 326/485 (67%), Gaps = 3/485 (0%)

Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
           +R  + +PN  T+   L AC+ + +L  G  + S     GL  + +V   L+++Y+KC +
Sbjct: 122 LRAGSPLPNSFTLAFALKACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEE 181

Query: 284 LVKARDLFES-IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
           +  AR +F+  +  +++ +W+ MIGGY+      EAL LFR+M  +++ P++VT +SV+ 
Sbjct: 182 VALARTVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVIS 241

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           ACA  GALDLG+W+HA+ID+    ++ + L T+LIDMYAKCG I+ A+ VFD M  +   
Sbjct: 242 ACAKAGALDLGRWVHAFIDRKGITVD-LELSTALIDMYAKCGLIERAKGVFDAMAERDTK 300

Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462
           +W+AMI GLA+HG  + AL LFSRM+   ++P+++TF+GVLSAC H+GL++ GR+Y++ M
Sbjct: 301 AWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTM 360

Query: 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
            Q+  I P +++YGCMVDL  R+ L DEA + +  M + P++ IW +LL A +   R ++
Sbjct: 361 -QELGIKPSMENYGCMVDLFCRSSLLDEAYSFVTGMAIPPNSVIWRTLLVASKNSNRFDI 419

Query: 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582
            +S +K LLELEP NP  YVLLSN+YA   +WD V+ +R ++ +  +  V GCSSIE+  
Sbjct: 420 VQSASKKLLELEPCNPENYVLLSNLYASNSQWDRVSYMRKKMKENNVNVVAGCSSIEING 479

Query: 583 VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEK 642
            +H+F+V D  HP+ K I  +L EI   + ++G  P T+ VL+D+ EE KE AL  HSE+
Sbjct: 480 YLHKFVVSDDSHPEIKEIRLLLREIADRVVRAGHKPWTAAVLHDVGEEEKEVALCEHSER 539

Query: 643 LAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCS 702
           LAIAYGL+ TK    IR+VKNLR C +CH   K++SK ++REII RDR RFH F +G+CS
Sbjct: 540 LAIAYGLLKTKAPHVIRVVKNLRFCPDCHEVAKIVSKSYDREIIVRDRVRFHRFVEGSCS 599

Query: 703 CNDYW 707
           C D+W
Sbjct: 600 CKDFW 604



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 126/389 (32%), Positives = 220/389 (56%), Gaps = 22/389 (5%)

Query: 24  PYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLH--NTQFALSKLIEI--------CA 73
           P  LL+      +   C  +  ++  H+++I+  L      FALSKL+          C 
Sbjct: 15  PRHLLEAHVVALVRRCCPGLLALRAAHARLIRLRLPRLTAAFALSKLLASSSSSSSSSCG 74

Query: 74  VSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVV---AIKFYVRMILSGF-VPN 129
            +P    SYA  +F+ I EP    +N++IR  S ++        +  Y RM+ +G  +PN
Sbjct: 75  AAP----SYARNLFDQIPEPTAFCYNSLIRALSSAAGAAPAADTVLVYRRMLRAGSPLPN 130

Query: 130 TYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN 189
           ++T  F LK+C+ + A+ EG+Q+H+   + GLE  P+V T L+N+YA+  E+  AR VF+
Sbjct: 131 SFTLAFALKACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFD 190

Query: 190 -KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS 248
                ++  +++A+I GY+  G +++A  LF EM   + N  P+E T+V+V+SACA  G+
Sbjct: 191 GMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADVN--PDEVTMVSVISACAKAGA 248

Query: 249 LELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGG 308
           L+LG WV + I+  G+  +L ++ ALIDMY+KCG + +A+ +F+++ +RD  +W+ MI G
Sbjct: 249 LDLGRWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVG 308

Query: 309 YTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN 368
                  + AL LF +ML+  + PN+VTF+ VL ACA+ G ++ G+   + + +   K  
Sbjct: 309 LAIHGLVEVALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTMQELGIK-P 367

Query: 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMG 397
           ++  +  ++D++ +   +  A     GM 
Sbjct: 368 SMENYGCMVDLFCRSSLLDEAYSFVTGMA 396



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 158/330 (47%), Gaps = 16/330 (4%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFE-TIREPNQVIWNNIIRGH 105
           +Q+HSQ  + GL  + +  + L+ + A     +++ A  VF+  + + N   W+ +I G+
Sbjct: 151 RQLHSQAFRRGLEPSPYVQTGLLNLYAKCE--EVALARTVFDGMVGDKNLAAWSAMIGGY 208

Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
           S       A+  +  M  +   P+  T   ++ +CAK  A+  G+ +HA + + G+  D 
Sbjct: 209 SRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVDL 268

Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
            + T+LI+MYA+ G +E A+ VF+  + RD  +++A+I G A  G ++ A +LF  M   
Sbjct: 269 ELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRM--L 326

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
           E    PN  T + VLSACAH G +  G    S ++  G+  ++     ++D++ +   L 
Sbjct: 327 ELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTMQELGIKPSMENYGCMVDLFCRSSLLD 386

Query: 286 KARDLFE--SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ-SNIEPNDVTFLSVLP 342
           +A       +I    VI W  ++    +++ +       +++L+     P +   LS L 
Sbjct: 387 EAYSFVTGMAIPPNSVI-WRTLLVASKNSNRFDIVQSASKKLLELEPCNPENYVLLSNLY 445

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372
           A          +W      +   K NNV++
Sbjct: 446 ASN-------SQWDRVSYMRKKMKENNVNV 468


>gi|297811673|ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/623 (37%), Positives = 371/623 (59%), Gaps = 60/623 (9%)

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDP--FVHTSLINMYAQNGELESARLVFNKSS 192
            +L+  A  S +  G+++HA +   GL+  P  ++  +L   YA +GE+ +A+ +F++  
Sbjct: 11  LLLRQSAHRSFLHPGRELHAVLTTSGLKKAPRSYLSNALFQFYASSGEIATAQKLFDEIP 70

Query: 193 L--RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250
           L  +D V +T L++ ++  G L ++ +LF EM  R +    +  ++V +   CA +  L 
Sbjct: 71  LSDKDNVDWTTLLSSFSRFGLLVNSMKLFVEM--RRKRVEIDHVSLVCLFGVCAKLEDLR 128

Query: 251 LGNWVCSLIEGHGLG------SNLHVTNALIDMYSKCG---------------------- 282
            G       +GHG+       +++ V NAL+DMY KCG                      
Sbjct: 129 FGE------QGHGVAVKMGFLTSVKVCNALMDMYGKCGFVSEVKRIFQALEEKSVVSWTV 182

Query: 283 ---------DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-QSNIEP 332
                     L + R++F+ + +R+V++W +M+ GY      +E L L  +M+ +     
Sbjct: 183 VLDTLVKWEGLKRGREVFDEMPERNVVAWTLMVAGYLGAGFTREVLELLAEMVFRCGHGL 242

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKN------HQKLNNVSLWTSLIDMYAKCGNI 386
           N VT  S+L ACA  G L +G+W+H Y  K        +  + V + T+L+DMYAKCGNI
Sbjct: 243 NFVTLCSMLSACAQSGNLVIGRWVHVYALKKAMMMGEEETYDGVMVGTALVDMYAKCGNI 302

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
            ++ +VF  M  + + +WNA+ SGLAMHGK    + +F  M+ E ++PDD+TF  +LSAC
Sbjct: 303 DSSIKVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPEMVRE-VKPDDLTFTALLSAC 361

Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
           +H G++D G + F+++ Q Y + PK+ HY CMVD+LGRAG  +EAE L++ M + P+  +
Sbjct: 362 SHLGMVDEGWRCFHSL-QFYGLEPKVDHYACMVDILGRAGRIEEAEILMREMPVPPNEVV 420

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
             SLLG+C VHG+LE+ E + + L+++ P +    +L+SNMY   GR D    +R  L +
Sbjct: 421 LGSLLGSCSVHGKLEIAERIKRELIQMSPGHTEYQILMSNMYVAEGRSDIADGLRGSLRN 480

Query: 567 KGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVL-- 624
           +G++K+PG SSI V   VH F  GD+ HP++K +Y  L+E+   +  +G+VPD S ++  
Sbjct: 481 RGIRKIPGLSSIYVNDSVHRFSSGDRSHPRTKEVYLKLNEVIERIRSAGYVPDISGLVSP 540

Query: 625 YDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNRE 684
            + D E KE AL  HSEKLA+ +GL+ TKP T + + KNLR+C +CHSA K++SK+++RE
Sbjct: 541 SEGDLEEKEQALCCHSEKLAVCFGLLETKPRTPLLVFKNLRICRDCHSAMKIVSKVYDRE 600

Query: 685 IIARDRNRFHHFKDGNCSCNDYW 707
           II RDRNRFH FK G+CSC+DYW
Sbjct: 601 IIIRDRNRFHQFKGGSCSCSDYW 623



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 145/332 (43%), Gaps = 53/332 (15%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           + +  KC  +  +K++   + +  + +    L  L++      +  L     VF+ + E 
Sbjct: 153 MDMYGKCGFVSEVKRIFQALEEKSVVSWTVVLDTLVK------WEGLKRGREVFDEMPER 206

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILS-GFVPNTYTFPFILKSCAKISAISEGKQI 152
           N V W  ++ G+  +      ++    M+   G   N  T   +L +CA+   +  G+ +
Sbjct: 207 NVVAWTLMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVIGRWV 266

Query: 153 HAHVLKLGL---ESDPF----VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
           H + LK  +   E + +    V T+L++MYA+ G ++S+  VF     R+ V++ AL +G
Sbjct: 267 HVYALKKAMMMGEEETYDGVMVGTALVDMYAKCGNIDSSIKVFRLMRKRNVVTWNALFSG 326

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC-SLIEGHGL 264
            A  G     R + D  P       P++ T   +LSAC+H+G ++ G W C   ++ +GL
Sbjct: 327 LAMHG---KGRMVIDMFPEMVREVKPDDLTFTALLSACSHLGMVDEG-WRCFHSLQFYGL 382

Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
              +     ++D+  + G +                               +EA +L R+
Sbjct: 383 EPKVDHYACMVDILGRAGRI-------------------------------EEAEILMRE 411

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356
           M    + PN+V   S+L +C+  G L++ + I
Sbjct: 412 M---PVPPNEVVLGSLLGSCSVHGKLEIAERI 440


>gi|302782375|ref|XP_002972961.1| hypothetical protein SELMODRAFT_98426 [Selaginella moellendorffii]
 gi|300159562|gb|EFJ26182.1| hypothetical protein SELMODRAFT_98426 [Selaginella moellendorffii]
          Length = 601

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/596 (38%), Positives = 352/596 (59%), Gaps = 9/596 (1%)

Query: 114 AIKFYVRMILSGFVPNTYTFPFILKSCAKIS--AISEGKQIHAHVLKLGLESDPFVHTSL 171
           A++ + + I      N  T+  +LKSCA +    + +GK+IH H +  G  +D  V  SL
Sbjct: 13  ALQLFKKSINEELQQNQATYVTVLKSCAHLGDDYLEDGKEIHRHAIAQGFGTDLVVQNSL 72

Query: 172 INMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVP 231
           I+MYA+ G  + A  VF+K   ++ +SYT++I  Y       +A +L+ +M    E  +P
Sbjct: 73  IHMYAKCGSFKFAAGVFDKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKM--LSEGIMP 130

Query: 232 NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLF 291
           +       L+ C    ++  G  +   +  H   + +  +NAL+ MY + G +  A+ +F
Sbjct: 131 DIYAYAAALAVCP---TIREGEAIHVKLGNHERRTPV-CSNALVGMYGRFGRIASAKWVF 186

Query: 292 ESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALD 351
           + I  +D+ S+N MI  +    D  +A+ L+ +M   N+EPN  T+ SVL AC+ LGAL 
Sbjct: 187 DGIRYKDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTYTSVLDACSKLGALT 246

Query: 352 LGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGL 411
            GK IH  +    Q   +V+  T+L++MYAKCG+   A  VF+  G K + +W +++S  
Sbjct: 247 EGKEIHKKVKGGDQP-TDVAYNTALVNMYAKCGSAHEARAVFNDCGLKNVFTWTSLMSAY 305

Query: 412 AMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK 471
           +  G++   L  + RM  EG+ PDD+TF  + +AC+H+GL D G  YF AM +D+ I P 
Sbjct: 306 SQPGQSQYRLEAYQRMNCEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAMREDHWIVPL 365

Query: 472 LQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLL 531
             HY CM+DLLGR G   EAE L++TM   PD   WT LL AC+V+G L++G    K + 
Sbjct: 366 QPHYTCMIDLLGRVGRLREAEELVRTMPYSPDVVTWTILLSACKVYGDLKIGARAYKRIT 425

Query: 532 ELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGD 591
           EL P + G Y+L+ NMYA AG+W DVA ++  +  +G+ K PG S IE    +HEF+ GD
Sbjct: 426 ELNPPDSGPYLLMGNMYAKAGKWADVAEVKKMIKQRGLAKPPGKSMIEAQRRIHEFVCGD 485

Query: 592 KVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLIS 651
             HP ++ I   L E+   L  +G+ PDT EVL D++EE K   L  HSE++A+  GL++
Sbjct: 486 TAHPLNQEIRARLQEVHEQLSHAGYEPDTKEVLVDVNEEVKPELLLFHSERMALGLGLLT 545

Query: 652 TKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           +  G T+ IVKNLR+C +CHS  KL+SK+ +R+++ RD +RFH F+ G+CSC DYW
Sbjct: 546 SDAGATLHIVKNLRICPDCHSFFKLVSKMLHRKVLVRDSHRFHIFQRGSCSCGDYW 601



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 144/297 (48%), Gaps = 7/297 (2%)

Query: 35  ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
           A L+ C  ++  + +H   +K G H  +  +     +     FG ++ A  VF+ IR  +
Sbjct: 137 AALAVCPTIREGEAIH---VKLGNHERRTPVCSNALVGMYGRFGRIASAKWVFDGIRYKD 193

Query: 95  QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
              +NN+I   +       AI  Y+ M      PN +T+  +L +C+K+ A++EGK+IH 
Sbjct: 194 LASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTYTSVLDACSKLGALTEGKEIHK 253

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
            V      +D   +T+L+NMYA+ G    AR VFN   L++  ++T+L++ Y+  G    
Sbjct: 254 KVKGGDQPTDVAYNTALVNMYAKCGSAHEARAVFNDCGLKNVFTWTSLMSAYSQPGQSQY 313

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVTNA 273
             + +  M    E  +P++ T   + +AC+H G  + G  +  ++ E H +         
Sbjct: 314 RLEAYQRMNC--EGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAMREDHWIVPLQPHYTC 371

Query: 274 LIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329
           +ID+  + G L +A +L  ++    DV++W +++       D K     ++++ + N
Sbjct: 372 MIDLLGRVGRLREAEELVRTMPYSPDVVTWTILLSACKVYGDLKIGARAYKRITELN 428



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 138/299 (46%), Gaps = 36/299 (12%)

Query: 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG--ALDLGKWIHAYIDKN 363
           +G Y     +K+AL LF++ +   ++ N  T+++VL +CA+LG   L+ GK IH +    
Sbjct: 1   MGAYQENDLHKKALQLFKKSINEELQQNQATYVTVLKSCAHLGDDYLEDGKEIHRHAIAQ 60

Query: 364 HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSL 423
               + V +  SLI MYAKCG+ K A  VFD M  K L S+ +MI       K  +A  L
Sbjct: 61  GFGTDLV-VQNSLIHMYAKCGSFKFAAGVFDKMEPKNLISYTSMIQAYTHTAKHVEAYEL 119

Query: 424 FSRMIGEGLQPDDITFVGVLSACN--------HAGLLDIGRQY---FNAMIQDY----KI 468
           + +M+ EG+ PD   +   L+ C         H  L +  R+     NA++  Y    +I
Sbjct: 120 YKKMLSEGIMPDIYAYAAALAVCPTIREGEAIHVKLGNHERRTPVCSNALVGMYGRFGRI 179

Query: 469 S-----------PKLQHYGCMVDLLGRAGLFDEAEALLKTME---MKPDAAIWTSLLGAC 514
           +             L  Y  M+ +  +     +A +L   ME   ++P+   +TS+L AC
Sbjct: 180 ASAKWVFDGIRYKDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTYTSVLDAC 239

Query: 515 RVHGRLELGESVAKHLLELEPENPGAY-VLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
              G L  G+ + K +   +     AY   L NMYA  G   +    R   ND G+K V
Sbjct: 240 SKLGALTEGKEIHKKVKGGDQPTDVAYNTALVNMYAKCGSAHEA---RAVFNDCGLKNV 295


>gi|224118458|ref|XP_002331487.1| predicted protein [Populus trichocarpa]
 gi|222873565|gb|EEF10696.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/595 (39%), Positives = 348/595 (58%), Gaps = 35/595 (5%)

Query: 22  DPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLS 81
           + P   +   P L  +  CT+M  +KQ+ + + KT L +  F +S+++  CA+S  GD++
Sbjct: 42  NSPTNTIITHPILLAMESCTSMLQLKQIQAHMTKTALISHTFPVSRVLAFCALSDSGDIN 101

Query: 82  YALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCA 141
           +A L+F  ++ PN  IWN +IRG+S +        F+ +M+  G   +  +F F LK+C 
Sbjct: 102 HAHLLFSQLQNPNTYIWNTMIRGYSKAKMGQTGFLFFCQMVQKGVEMDCRSFVFALKACE 161

Query: 142 KISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTA 201
           +   + EGK +H  V K+G      V   L++ Y   G L  ARLVF++ S RD VS+T+
Sbjct: 162 QFLGVLEGKSVHCVVWKMGFVYTLLVQNGLVHFYGLRGCLGLARLVFDEISERDVVSWTS 221

Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261
           +I GY+   + D+A +LFD M +      PNE T++ VLS+C+  G L LG      ++ 
Sbjct: 222 MIDGYSKHKWCDEALKLFDSM-LMYGVVEPNEVTMIAVLSSCSQKGDLILGKTFLEYVKT 280

Query: 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALML 321
             +  +L++ NA++DMY KCG L  AR++F++                            
Sbjct: 281 RNVTRSLNLMNAILDMYVKCGCLDSAREIFDT---------------------------- 312

Query: 322 FRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA-YIDKNHQKLNNVSLWTSLIDMY 380
               + +   P + T   VLP C  LG LD+G+WIH  Y+   + +++ V L  +LIDMY
Sbjct: 313 ----MGAAFAPMENTLACVLPVCGQLGCLDVGQWIHRNYVRMRYNEIS-VILANALIDMY 367

Query: 381 AKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFV 440
           AKCG I  A +VF+ M  + L SWN+MI+  A HG A +ALS+F RMI  G +PDDIT V
Sbjct: 368 AKCGVIHEAAKVFNDMPERNLVSWNSMITAYASHGHAKQALSVFERMISGGFKPDDITLV 427

Query: 441 GVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEM 500
           GVLSAC+H GL+  G++YF  M + Y I PK +HY CM+DLLGR GL ++A  L+  M M
Sbjct: 428 GVLSACSHGGLVAEGQEYFQNMKRKYGIEPKNEHYACMIDLLGRVGLLEDAYELITKMPM 487

Query: 501 KPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATI 560
           +P AA W +L+ ACR+HG +E+ +  A  LLEL+PE+ G YVLL+N+ A   RW DV   
Sbjct: 488 EPSAAAWGALVHACRMHGNVEVAKIAAPRLLELDPEDSGIYVLLANICASGRRWGDVKMA 547

Query: 561 RTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSG 615
           R  + ++ +KK+PG S +EV    HEFL GD+ HPQS+ IY  LD++ A+ +  G
Sbjct: 548 RRMMRERRVKKIPGRSIVEVEGQFHEFLAGDESHPQSEGIYNALDQLFAMSKLEG 602


>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 582

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/601 (40%), Positives = 348/601 (57%), Gaps = 76/601 (12%)

Query: 110 SPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHT 169
           +P +A++ +  ++ SG  P+   +   L  CA+  A     Q+H H  K G  S   V  
Sbjct: 55  NPHLALRLFDHLLRSGADPDPIAYALALARCARERAYPAAAQLHGHAAKRGAASHRRV-- 112

Query: 170 SLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENF 229
                  +NG                      LI  Y+  G L DAR++FD  P      
Sbjct: 113 -------RNG----------------------LIHAYSVCGMLFDARKVFDHGP------ 137

Query: 230 VPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARD 289
                              +++  W C L+ G+  G +   T AL             R+
Sbjct: 138 ------------------EVDMIAWNC-LLRGYAQGRD---TGAL-------------RE 162

Query: 290 LFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN-IEPNDVTFLSVLPACAYLG 348
            F  +  RD +SWN +I       +++EA+ +FR+ML SN  +P+ VT +SV+ A AYLG
Sbjct: 163 FFAQMPARDSVSWNTVIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLG 222

Query: 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD-GMGYKTLASWNAM 407
           AL  G W HAY+ +   +++   L ++LI+MY+KCG I+ A  VF+     +++ +WNAM
Sbjct: 223 ALAQGLWAHAYVCRKEIEVDE-KLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNAM 281

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           ++G    G +++AL LF+RM   G  P+ ITF  +L+AC+H G ++ G  YF  M     
Sbjct: 282 LAGFTASGCSERALELFTRMESSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSS 341

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
           I P + HYGCMVDL  RAGLF++AE +++ M M+PDAA+W +L+GACR +   ELG+   
Sbjct: 342 IEPDIAHYGCMVDLFCRAGLFEKAEEMIQMMPMEPDAAVWKALVGACRTYSNFELGKKAG 401

Query: 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF 587
             L+E  P +   YVLLSN+YA  G W  V  +R  + + G++KVPG SSIE+  V+HEF
Sbjct: 402 HRLIEAAPNDHAGYVLLSNIYALDGNWKGVYKVRKLMLNCGVQKVPGSSSIELDGVIHEF 461

Query: 588 LVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM-DEEWKEGALSHHSEKLAIA 646
           + GDK H + + +YEML EI   L+ +G+ PDTS+VL D+ DE+ KE +L+ HSE+LA+A
Sbjct: 462 ISGDKSHSRKRDVYEMLSEICQQLKVAGYAPDTSQVLLDIDDEDVKESSLALHSERLALA 521

Query: 647 YGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDY 706
           +GLIST PGT IRIVKNLRVCG+CH+A KL+SKI+ R I+ RD NRFH F++G+CSC DY
Sbjct: 522 FGLISTAPGTPIRIVKNLRVCGDCHNAIKLLSKIYGRCIMVRDANRFHRFREGSCSCGDY 581

Query: 707 W 707
           W
Sbjct: 582 W 582



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 145/322 (45%), Gaps = 41/322 (12%)

Query: 48  QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSL 107
           Q+H    K G  + +   + LI   A S  G L  A  VF+   E + + WN ++RG++ 
Sbjct: 96  QLHGHAAKRGAASHRRVRNGLIH--AYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQ 153

Query: 108 SSSPVVAIKFYVRMILSGFV--------------------------------PNTYTFPF 135
                   +F+ +M     V                                P+  T   
Sbjct: 154 GRDTGALREFFAQMPARDSVSWNTVIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVS 213

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF-NKSSLR 194
           ++ + A + A+++G   HA+V +  +E D  + ++LINMY++ G +E A  VF N  +LR
Sbjct: 214 VISAIAYLGALAQGLWAHAYVCRKEIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALR 273

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-N 253
              ++ A++ G+ + G  + A +LF  M      FVPN+ T  T+L+AC+H G +E G  
Sbjct: 274 SVDTWNAMLAGFTASGCSERALELFTRM--ESSGFVPNKITFNTLLNACSHGGFVEEGIG 331

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHT 312
           +   +     +  ++     ++D++ + G   KA ++ + +  + D   W  ++G     
Sbjct: 332 YFERMTNSSSIEPDIAHYGCMVDLFCRAGLFEKAEEMIQMMPMEPDAAVWKALVGACRTY 391

Query: 313 SDYKEALMLFRQMLQSNIEPND 334
           S+++       +++++   PND
Sbjct: 392 SNFELGKKAGHRLIEA--APND 411


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 249/670 (37%), Positives = 378/670 (56%), Gaps = 8/670 (1%)

Query: 41  TNMQNIKQVHSQIIKT-GLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWN 99
           ++M+  + VH++I+KT       F  + LI +   S       A LV       N V W 
Sbjct: 20  SSMRLGRVVHARIVKTLDSPPPPFLANYLINM--YSKLDHPESARLVLRLTPARNVVSWT 77

Query: 100 NIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKL 159
           +++ G + +     A+  +  M   G  PN +TFP + K+ A +     GKQIHA  +K 
Sbjct: 78  SLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQIHALAVKC 137

Query: 160 GLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLF 219
           G   D FV  S  +MY +    + AR +F++   R+  ++ A I+   + G   +A + F
Sbjct: 138 GRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAF 197

Query: 220 DEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYS 279
            E   R     PN  T    L+AC+    L+LG  +  L+   G  +++ V N LID Y 
Sbjct: 198 IE--FRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYG 255

Query: 280 KCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS 339
           KC  +  +  +F  +  ++ +SW  ++  Y    + ++A +L+ +  +  +E +D    S
Sbjct: 256 KCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISS 315

Query: 340 VLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK 399
           VL ACA +  L+LG+ IHA+  K   +  N+ + ++L+DMY KCG I+ +EQ FD M  K
Sbjct: 316 VLSACAGMAGLELGRSIHAHAVKACVE-RNIFVGSALVDMYGKCGCIEDSEQAFDEMPEK 374

Query: 400 TLASWNAMISGLAMHGKADKALSLFSRMI--GEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
            L + N++I G A  G+ D AL+LF  M   G G  P+ +TFV +LSAC+ AG ++ G +
Sbjct: 375 NLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGMK 434

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
            F++M   Y I P  +HY C+VD+LGRAG+ ++A   +K M +KP  ++W +L  ACR+H
Sbjct: 435 IFDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQNACRMH 494

Query: 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577
           G+  LG   A++L +L+P++ G +VLLSN +A AGRW +  T+R  +   G+KK  G S 
Sbjct: 495 GKPHLGILAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREEMKGVGIKKGAGYSW 554

Query: 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALS 637
           I V + VH F   D+ H  +K I  ML ++   +E +G+ PD    LYD++EE K   +S
Sbjct: 555 ITVKNQVHAFQAKDRSHKMNKEIQTMLTKLRNKMEAAGYKPDLKLSLYDLEEEEKAAEVS 614

Query: 638 HHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFK 697
           HHSEKLA+A+GL++      IRI KNLR+CG+CHS  K +S    REII RD NRFH FK
Sbjct: 615 HHSEKLALAFGLVALPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFK 674

Query: 698 DGNCSCNDYW 707
           DG CSC DYW
Sbjct: 675 DGICSCKDYW 684



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 115/390 (29%), Positives = 191/390 (48%), Gaps = 6/390 (1%)

Query: 135 FILKSCAKISAISEGKQIHAHVLK-LGLESDPFVHTSLINMYAQNGELESARLVFNKSSL 193
            +LK+    S++  G+ +HA ++K L     PF+   LINMY++    ESARLV   +  
Sbjct: 11  LLLKNAISTSSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPA 70

Query: 194 RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253
           R+ VS+T+L++G A  G+   A  LF+   +R E   PN+ T   V  A A +     G 
Sbjct: 71  RNVVSWTSLVSGLAQNGHFSTA--LFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGK 128

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTS 313
            + +L    G   ++ V  +  DMY K      AR LF+ I +R++ +WN  I       
Sbjct: 129 QIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDG 188

Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
             KEA+  F +  +   +PN +TF   L AC+    LDLG  +H  + ++     +VS++
Sbjct: 189 RPKEAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFD-TDVSVY 247

Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
             LID Y KC  I+++E +F  MG K   SW ++++    + + +KA  L+ R   E ++
Sbjct: 248 NGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVE 307

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
             D     VLSAC     L++GR   +A      +   +     +VD+ G+ G  +++E 
Sbjct: 308 TSDFMISSVLSACAGMAGLELGRS-IHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQ 366

Query: 494 LLKTMEMKPDAAIWTSLLGACRVHGRLELG 523
               M  K +     SL+G     G++++ 
Sbjct: 367 AFDEMPEK-NLVTLNSLIGGYAHQGQVDMA 395


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/591 (40%), Positives = 359/591 (60%), Gaps = 16/591 (2%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIR-E 92
           L+LL +C + + ++Q+H+Q     +H     LS+ I +       D +Y+ L+F  I   
Sbjct: 25  LSLLKQCPSTKTLQQIHTQFTIHSIHKPNHLLSQSISL------KDFTYSTLIFSHITPH 78

Query: 93  PNQVIWNNIIRGHSLSSSPV-VAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
           PN   +N ++R  + +     + +  Y +M      PN +TFPF+  +CA +  I   + 
Sbjct: 79  PNDYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARL 138

Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
            H  V KLGL++D     S++ MY + GE   AR VF++ + +D VS+ +L++GYA  G+
Sbjct: 139 AHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGF 198

Query: 212 LDDARQLFDEMPIREEN-FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
             +A ++F  +  REE+ F P+E ++V+VL AC  +G LELG WV   +   G+  N ++
Sbjct: 199 AREAVEVFGRL--REESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYI 256

Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
            +ALI MYSKCG+LV +R +F+ +  RD I+WN  I  Y       EA+ LF  M ++ +
Sbjct: 257 GSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGV 316

Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL-NNVSLWTSLIDMYAKCGNIKAA 389
           +PN VT  +VL ACA +GALDLGK +  Y    H+ L +++ + T+LIDMYAKCG++++A
Sbjct: 317 DPNKVTLTAVLSACASIGALDLGKQMDEY--ATHRGLQHDIFVATALIDMYAKCGSLESA 374

Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG--LQPDDITFVGVLSACN 447
           ++VF+ M  K  ASWNAMIS LA HGKA +ALSLF RM  EG   +P+DITFV +LSAC 
Sbjct: 375 QRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACV 434

Query: 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
           HAGL+D G + F+ M   + + PK++HY CMVDLL RAG   EA  +++ M  KPD    
Sbjct: 435 HAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTL 494

Query: 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567
            +L  AC+    +++GE V + LLEL+P N G Y++ S +Y     WDD A +R  + + 
Sbjct: 495 GALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMREN 554

Query: 568 GMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVP 618
           G+ K PGCS IEVG+ + EFL GD +   S  +  ++D +   L+K G+VP
Sbjct: 555 GVTKTPGCSWIEVGNQLREFLSGDGLTLDSIDVRNIIDLLYEELKKEGYVP 605


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/622 (38%), Positives = 360/622 (57%), Gaps = 20/622 (3%)

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145
           VFE + E N V W  +++G+      V A   + RM     V  T  F  ++        
Sbjct: 101 VFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPERNEVSWTVMFGGLIDG----GR 156

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
           I + ++++     +    D    T++I    + G ++ AR +F++   R+ +++T +ITG
Sbjct: 157 IDDARKLY----DMMPGKDVVASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITG 212

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
           Y     +D AR+LF+ MP +       E +  ++L      G +E       ++    + 
Sbjct: 213 YGQNKRVDVARKLFEVMPEK------TEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVI 266

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
           +     NA+I    + G++VKAR +F+ +E RD  +W  MI  Y       EAL LF QM
Sbjct: 267 A----CNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQM 322

Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
            +  + P+  + +S+L  CA L +L  G+ +HA++ +  Q   +V + + L+ MY KCG 
Sbjct: 323 QRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRC-QFDGDVYVASVLMTMYVKCGE 381

Query: 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
           +  A+ VFD    K +  WN++ISG A HG  ++AL +F  M   G  P+ +T + +L+A
Sbjct: 382 LVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTA 441

Query: 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAA 505
           C++ G L+ G + F +M   + ++P ++HY C VD+LGRAG  D+A  L+ +M +KPDA 
Sbjct: 442 CSYGGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDAT 501

Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565
           +W +LLGAC+ H RL+L E  AK L E+EPEN G Y+LLS++ A   +W DVA +R  + 
Sbjct: 502 VWGALLGACKTHSRLDLAEVAAKKLFEIEPENAGPYILLSSINASRSKWGDVAEMRKNMR 561

Query: 566 DKGMKKVPGCSSIEVGSVVHEFLVGD-KVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVL 624
            K + K PGCS IEVG  VH F  G  + HP+   I  ML++ D LL ++G+ PD S VL
Sbjct: 562 TKNVSKFPGCSWIEVGKKVHMFTRGGIRNHPEQAMILMMLEKTDGLLREAGYSPDCSHVL 621

Query: 625 YDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNRE 684
           +D+DEE K  +LS HSE+LA+AYGL+    G  IR++KNLRVCG+CH+A KLISK+  RE
Sbjct: 622 HDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTERE 681

Query: 685 IIARDRNRFHHFKDGNCSCNDY 706
           II RD NRFHHF +G CSC DY
Sbjct: 682 IILRDANRFHHFNNGECSCRDY 703



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 143/266 (53%), Gaps = 6/266 (2%)

Query: 71  ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNT 130
           I A+   G++  A  VF+ + + +   W  +I+ +      + A++ + +M   G  P+ 
Sbjct: 272 IVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSF 331

Query: 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNK 190
            +   IL  CA ++++  G+Q+HAH+++   + D +V + L+ MY + GEL  A+LVF++
Sbjct: 332 PSLISILSVCATLASLQYGRQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDR 391

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250
              +D + + ++I+GYAS G  ++A ++F EMP+     +PN+ T++ +L+AC++ G LE
Sbjct: 392 FPSKDIIMWNSIISGYASHGLGEEALKVFHEMPL--SGTMPNKVTLIAILTACSYGGKLE 449

Query: 251 LGNWVCSLIEGH-GLGSNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGG 308
            G  +   +E    +   +   +  +DM  + G + KA +L  S+  K D   W  ++G 
Sbjct: 450 EGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGA 509

Query: 309 YTHTSDYKEALMLFRQMLQSNIEPND 334
               S    A +  +++ +  IEP +
Sbjct: 510 CKTHSRLDLAEVAAKKLFE--IEPEN 533



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 110/493 (22%), Positives = 202/493 (40%), Gaps = 65/493 (13%)

Query: 59  HNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFY 118
           ++T   ++   EI  +S  G ++ A   F+++R      WN+I+ G+  +  P  A + +
Sbjct: 12  YSTSTGVNNSFEISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMF 71

Query: 119 VRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN 178
             M            P                           E +      L++ Y +N
Sbjct: 72  DEM------------P---------------------------ERNIVSWNGLVSGYIKN 92

Query: 179 GELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVT 238
             +E AR VF     R+ VS+TA++ GY   G + +A  LF  MP R      NE +   
Sbjct: 93  RMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPER------NEVSWTV 146

Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD 298
           +       G ++    +  ++ G  + ++ ++   L     + G + +AR++F+ + +R+
Sbjct: 147 MFGGLIDGGRIDDARKLYDMMPGKDVVASTNMIGGL----CREGRVDEAREIFDEMRERN 202

Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
           VI+W  MI GY        A  LF  M     E  +V++ S+L      G ++  +    
Sbjct: 203 VITWTTMITGYGQNKRVDVARKLFEVM----PEKTEVSWTSMLLGYTLSGRIEDAEEFFE 258

Query: 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKAD 418
            +      +  V    ++I    + G I  A +VFD M  +  A+W  MI      G   
Sbjct: 259 VM-----PMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFEL 313

Query: 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478
           +AL LF++M  +G++P   + + +LS C     L  GRQ    +++  +    +     +
Sbjct: 314 EALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVR-CQFDGDVYVASVL 372

Query: 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAK--HLLELEPE 536
           + +  + G   +A+ +      K D  +W S++     HG   LGE   K  H + L   
Sbjct: 373 MTMYVKCGELVKAKLVFDRFPSK-DIIMWNSIISGYASHG---LGEEALKVFHEMPLSGT 428

Query: 537 NPGAYVLLSNMYA 549
            P    L++ + A
Sbjct: 429 MPNKVTLIAILTA 441



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 89/197 (45%), Gaps = 21/197 (10%)

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           I   ++ G I  A + FD + YK + SWN+++SG   +G   +A  +F  M    +    
Sbjct: 24  ISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPERNI---- 79

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
           +++ G++S      +++  R  F  M +   +S     +  MV    + G+  EAE L  
Sbjct: 80  VSWNGLVSGYIKNRMIEEARNVFEIMPERNVVS-----WTAMVKGYVQEGMVVEAELLFW 134

Query: 497 TMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS-NMYAG---AG 552
            M  + + + WT + G     GR++     A+ L ++    PG  V+ S NM  G    G
Sbjct: 135 RMPERNEVS-WTVMFGGLIDGGRID----DARKLYDM---MPGKDVVASTNMIGGLCREG 186

Query: 553 RWDDVATIRTRLNDKGM 569
           R D+   I   + ++ +
Sbjct: 187 RVDEAREIFDEMRERNV 203


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 244/634 (38%), Positives = 362/634 (57%), Gaps = 14/634 (2%)

Query: 83  ALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCA- 141
           A  +F+   +P+ V +N +I G++ +   V A+  + RM   GF  + +T   ++ +C  
Sbjct: 93  ARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFTLSGLIAACCD 152

Query: 142 KISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF-NKSSLRDAVSYT 200
           ++  I   KQ+H   +  G +S   V+ + +  Y++ G L  A  VF     LRD VS+ 
Sbjct: 153 RVDLI---KQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDGLRDEVSWN 209

Query: 201 ALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE 260
           ++I  Y        A  L+ EM  +   F  +  T+ +VL+A   +  L  G      + 
Sbjct: 210 SMIVAYGQHKEGAKALALYKEMIFK--GFKIDMFTLASVLNALTSLDHLIGGRQFHGKLI 267

Query: 261 GHGLGSNLHVTNALIDMYSKCGD---LVKARDLFESIEKRDVISWNVMIGGYTHTSDY-K 316
             G   N HV + LID YSKCG    +  +  +F+ I   D++ WN MI GY+   ++ +
Sbjct: 268 KAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISGYSMNEEHSE 327

Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
           EA+  FRQM +    P+D +F+ V  AC+ L +   GK IH    K++   N +S+  +L
Sbjct: 328 EAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVNNAL 387

Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
           I +Y K GN+  A +VFD M      S+N MI G A HG   +AL L+ RM+  G+ P++
Sbjct: 388 ISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNN 447

Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLK 496
           ITFV +LSAC H G +D G++YFN M + +KI P+ +HY CM+DLLGRAG  +EAE  + 
Sbjct: 448 ITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFID 507

Query: 497 TMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
            M  KP +  W +LLGACR H  + L E  AK L+ ++P     YV+L+NMYA AG+W++
Sbjct: 508 AMPYKPGSVAWAALLGACRKHKNMALAERAAKELMVMQPLAATPYVMLANMYADAGKWEE 567

Query: 557 VATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGF 616
           +A++R  +  K ++K PGCS IEV    H F+  D  HP  + + E L+E+   ++K G+
Sbjct: 568 MASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGY 627

Query: 617 VPDTSEVLYDMDEEWKEGA---LSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSA 673
           V D    +   DE  +      L HHSEKLA+A+GL+ST+ G  I +VKNLR+CG+CH+A
Sbjct: 628 VMDKKWAMVKEDEAGEGEEEMRLGHHSEKLAVAFGLMSTRDGEEIVVVKNLRICGDCHNA 687

Query: 674 TKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            K +S +  REII RD  RFH FKDG CSC DYW
Sbjct: 688 IKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 135/495 (27%), Positives = 221/495 (44%), Gaps = 80/495 (16%)

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
            +LKS A+    + GK +HA  +K  + S  ++    +N+Y++ G L  AR  F+ +   
Sbjct: 14  LLLKSVAERDLFT-GKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEP 72

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMP-----------------------------IR 225
           +  SY  ++  YA    +  ARQLFDE P                             +R
Sbjct: 73  NVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMR 132

Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
           E  F  +  T+  +++AC     L +    C  + G G  S   V NA +  YSK G L 
Sbjct: 133 ELGFEVDGFTLSGLIAACCDRVDL-IKQLHCFAVSG-GFDSYSSVNNAFVTYYSKGGLLR 190

Query: 286 KARDLFESIEK-RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
           +A  +F  ++  RD +SWN MI  Y    +  +AL L+++M+    + +  T  SVL A 
Sbjct: 191 EAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNAL 250

Query: 345 AYLGALDLGKWIHAYIDKN--HQKLNNVSLWTSLIDMYAKCG---NIKAAEQVFDGMGYK 399
             L  L  G+  H  + K   HQ   N  + + LID Y+KCG    +  +E+VF  +   
Sbjct: 251 TSLDHLIGGRQFHGKLIKAGFHQ---NSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSP 307

Query: 400 TLASWNAMISGLAMHGK-ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQY 458
            L  WN MISG +M+ + +++A+  F +M   G +PDD +FV V SAC++      G+Q 
Sbjct: 308 DLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQI 367

Query: 459 F----------------NAMIQDYKIS-------------PKLQ--HYGCMVDLLGRAGL 487
                            NA+I  Y  S             P+L    + CM+    + G 
Sbjct: 368 HGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGH 427

Query: 488 FDEAEALLKTM---EMKPDAAIWTSLLGACRVHGRLELGE---SVAKHLLELEPENPGAY 541
             EA  L + M    + P+   + ++L AC   G+++ G+   +  K   ++EPE    Y
Sbjct: 428 GTEALRLYQRMLDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAE-HY 486

Query: 542 VLLSNMYAGAGRWDD 556
             + ++   AG+ ++
Sbjct: 487 SCMIDLLGRAGKLEE 501



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 92/176 (52%), Gaps = 8/176 (4%)

Query: 34  LALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
           + + S C+N+ +    KQ+H   IK+ + + + +++  + I      G+L  A  VF+ +
Sbjct: 349 VCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVNNAL-ISLYYKSGNLLDARRVFDRM 407

Query: 91  REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
            E N V +N +I+G++       A++ Y RM+ SG  PN  TF  IL +CA    + EG 
Sbjct: 408 PELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHCGKVDEG- 466

Query: 151 QIHAHVLKLGLESDPFV--HTSLINMYAQNGELESARLVFNKSSLR-DAVSYTALI 203
           Q + + +K   + +P    ++ +I++  + G+LE A    +    +  +V++ AL+
Sbjct: 467 QKYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALL 522


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/574 (39%), Positives = 350/574 (60%), Gaps = 4/574 (0%)

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
           ++L+ CAK  +   G+  HA ++++GLE D      LINMY++   ++SAR  FN+  ++
Sbjct: 48  YLLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVK 107

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
             VS+  +I          +A +L  +M  + E    NE T+ +VL  CA   ++     
Sbjct: 108 SLVSWNTVIGALTQNAEDREALKLLIQM--QREGTPFNEFTISSVLCNCAFKCAILECMQ 165

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           + +      + SN  V  AL+ +Y+KC  +  A  +FES+ +++ ++W+ M+ GY     
Sbjct: 166 LHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGF 225

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
           ++EAL++FR       + +     S + ACA L  L  GK +HA   K+    +N+ + +
Sbjct: 226 HEEALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFG-SNIYVSS 284

Query: 375 SLIDMYAKCGNIKAAEQVFDG-MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
           SLIDMYAKCG I+ A  VF G +  +++  WNAMISG A H +A +A+ LF +M   G  
Sbjct: 285 SLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFF 344

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
           PDD+T+V VL+AC+H GL + G++YF+ M++ + +SP + HY CM+D+LGRAGL  +A  
Sbjct: 345 PDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYD 404

Query: 494 LLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGR 553
           L++ M     +++W SLL +C+++G +E  E  AK+L E+EP N G ++LL+N+YA   +
Sbjct: 405 LIERMPFNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEMEPNNAGNHILLANIYAANKK 464

Query: 554 WDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEK 613
           WD+VA  R  L +  ++K  G S IE+ + +H F VG++ HPQ   IY  LD +   L+K
Sbjct: 465 WDEVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDIYAKLDNLVVELKK 524

Query: 614 SGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSA 673
             +  DTS  L+D++E  K+  L HHSEKLAI +GL+       IRI+KNLR+CG+CH+ 
Sbjct: 525 LNYKVDTSNDLHDVEENRKQMLLRHHSEKLAITFGLMCLPRDIPIRIIKNLRICGDCHTF 584

Query: 674 TKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
            KL+SK  +REII RD NRFHHFKDG CSC ++W
Sbjct: 585 MKLVSKSTSREIIVRDTNRFHHFKDGFCSCGEFW 618



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 207/389 (53%), Gaps = 6/389 (1%)

Query: 34  LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
           L L +K  +    +  H+QII+ GL       + LI + +     D   A   F  +   
Sbjct: 50  LQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVD--SARKKFNEMPVK 107

Query: 94  NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
           + V WN +I   + ++    A+K  ++M   G   N +T   +L +CA   AI E  Q+H
Sbjct: 108 SLVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLH 167

Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
           A  +K  ++S+ FV T+L+++YA+   ++ A  +F     ++AV++++++ GY   G+ +
Sbjct: 168 AFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHE 227

Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
           +A  +F    +    F  +   + + +SACA + +L  G  V ++    G GSN++V+++
Sbjct: 228 EALLIFRNAQLM--GFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSS 285

Query: 274 LIDMYSKCGDLVKARDLFESI-EKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
           LIDMY+KCG + +A  +F+ + E R ++ WN MI G+   +   EA++LF +M Q    P
Sbjct: 286 LIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFP 345

Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
           +DVT++ VL AC+++G  + G+     + + H    +V  ++ +ID+  + G +  A  +
Sbjct: 346 DDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDL 405

Query: 393 FDGMGYKTLAS-WNAMISGLAMHGKADKA 420
            + M +   +S W ++++   ++G  + A
Sbjct: 406 IERMPFNATSSMWGSLLASCKIYGNIEFA 434


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/595 (39%), Positives = 356/595 (59%), Gaps = 41/595 (6%)

Query: 150 KQIHAHVLKLGLESDPFVHTSLINMYAQN--GELESARLVFNKSSLRDAVSYTALITGYA 207
           KQI A ++K  + ++P + T  + +      G+L  A+ VFN  +  +   + A+I  Y+
Sbjct: 5   KQIQAQMIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAIIRAYS 64

Query: 208 SRGYLDDARQLFDEMPIREENFVPNES-TVVTVLSACAHMGSLELGNWVCSLIEGHGLGS 266
           +    D+    F        + VP+ S T   +L AC ++ ++     V  L+   G GS
Sbjct: 65  NS---DEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFGS 121

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK---------- 316
           ++   NAL+ +Y+ CG++  AR LF++I +RD +SWN+MI GY  + D K          
Sbjct: 122 DVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMP 181

Query: 317 ---------------------EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKW 355
                                EAL L  +M  +  E + V   S+L ACA LGALD G+W
Sbjct: 182 LKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRW 241

Query: 356 IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM--GYKTLASWNAMISGLAM 413
           +H Y+  N   ++ V +  +L++MY KCG+++ A  VF  +    K +  W AMI G A+
Sbjct: 242 LHFYVLNNGVDVDRV-IGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAI 300

Query: 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQ 473
           HG+  +AL  F+RM  EG++P+ ITF  VL AC++ GL++ G++ F +M   Y ++P ++
Sbjct: 301 HGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIE 360

Query: 474 HYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL 533
           HYGCMVDLLGR+G  DEA+ L+K M MKP A IW +LL AC +H    LG  V  HL+E+
Sbjct: 361 HYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIHRDFLLGSQVGAHLVEV 420

Query: 534 EPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKV 593
           + ++ G Y+ L+ + A  G+W + A +R ++   G+   PG SS+ +  +VHEFL G + 
Sbjct: 421 DSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGIVHEFLAGHQD 480

Query: 594 HPQSKHIYEMLDEI-DALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLIST 652
           HPQ + I   L +I + L +  G+ P T ++L D++ E KE A++ HSEKLAIA+GLI+T
Sbjct: 481 HPQMEQIQLKLKQIAERLRQDEGYEPATKDLLLDLENEEKETAMAQHSEKLAIAFGLINT 540

Query: 653 KPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           KPGTTIR++KNLR+C +CH+  KL+S+I++REII RDR RFHHF+DG+CSC DYW
Sbjct: 541 KPGTTIRVIKNLRICRDCHTVAKLVSQIYSREIIMRDRVRFHHFRDGSCSCKDYW 595



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 124/404 (30%), Positives = 209/404 (51%), Gaps = 32/404 (7%)

Query: 43  MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNII 102
           M+ +KQ+ +Q+IKT +       +K + +C     GDL YA  VF  I  PN  +WN II
Sbjct: 1   MKQLKQIQAQMIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAII 60

Query: 103 RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE 162
           R +S S  P +A   Y +M+ S    N+YTFPF+L++C  + A+ E  Q+H  V+KLG  
Sbjct: 61  RAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFG 120

Query: 163 SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
           SD F   +L+++YA  GE+  AR +F+    RDAVS+  +I GY   G +  A  +F +M
Sbjct: 121 SDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDM 180

Query: 223 PIR-----------------------------EENFVPNESTVVTVLSACAHMGSLELGN 253
           P++                                F  +   + ++L+ACA++G+L+ G 
Sbjct: 181 PLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGR 240

Query: 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE--KRDVISWNVMIGGYTH 311
           W+   +  +G+  +  +  AL++MY KCGD+ +A  +F  ++  ++DV  W  MI G+  
Sbjct: 241 WLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAI 300

Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
                EAL  F +M +  I PN +TF +VL AC+Y G ++ GK +   +   +    ++ 
Sbjct: 301 HGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIE 360

Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS-WNAMISGLAMH 414
            +  ++D+  + G +  A+++   M  K  A  W A++    +H
Sbjct: 361 HYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIH 404


>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 558

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/561 (42%), Positives = 356/561 (63%), Gaps = 12/561 (2%)

Query: 151 QIHAHVLKLGLESDPF-VHTSLINMYAQNGE-LESARLVFNKSSLRDAVSYTALITGYAS 208
           ++H +++K   ++DP  + T L++  A   E L  AR VF++    D ++Y  +I  + S
Sbjct: 6   RLHCYIIKSSKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTIIRSH-S 64

Query: 209 RGYLDDARQLFDEMPIREENFVP-NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
           R +   +   F  M     N +P +  T   VL AC+    L++   + SLI  +GLGS+
Sbjct: 65  RFFPSHSLSYFFSM---RSNGIPLDNFTFPFVLKACSR---LQINLHLHSLIVKYGLGSD 118

Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM-L 326
           + V NALI +Y  CG L  A  +F+ + +RD +SW+ +I  + +     EAL LF +M L
Sbjct: 119 IFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQL 178

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
           +  + P++VT LSV+ A ++LG L+LG+W+ A+I +    ++ V+L T+LIDM+++CG+I
Sbjct: 179 EDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGFGVS-VALGTALIDMFSRCGSI 237

Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
             +  VF+ M  + + +W A+I+GL +HG++ +AL++F  M   G+QPD +TF GVL AC
Sbjct: 238 DESIVVFEKMAVRNVLTWTALINGLGIHGRSMEALAMFHSMRKSGVQPDYVTFSGVLVAC 297

Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
           +H GL+  G   F ++ + Y + P L HYGCMVD+LGRAGL +EA   ++ M MKP++ I
Sbjct: 298 SHGGLVKEGWDIFESIRKVYGMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSII 357

Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
           W +LLGAC  H  L L E V   + ++     G  VLLSN+Y  AGRW + A+IR+++ +
Sbjct: 358 WRTLLGACVNHNNLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMRE 417

Query: 567 KGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYD 626
           K + K PGCSSI V   +HEF+ GD  HPQS+ I + L  I   L   G++  T  VL+D
Sbjct: 418 KRIGKEPGCSSINVDQTIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTKNVLHD 477

Query: 627 MDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREII 686
           ++EE +E +LS+HSEKLA+A+ ++S K   TIRI+KNLR+C +CHS  K IS  F R+II
Sbjct: 478 IEEEEREHSLSYHSEKLAVAFAILSMKDKRTIRIMKNLRICYDCHSFMKHISVRFERKII 537

Query: 687 ARDRNRFHHFKDGNCSCNDYW 707
            RDRNRFHHF+ G CSC+DYW
Sbjct: 538 IRDRNRFHHFEKGLCSCHDYW 558



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 127/389 (32%), Positives = 214/389 (55%), Gaps = 9/389 (2%)

Query: 43  MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNII 102
           M N+ ++H  IIK+   N   +L  L+  C  +    LSYA  VF  I  P+ + +N II
Sbjct: 1   MNNVYRLHCYIIKSSKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTII 60

Query: 103 RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE 162
           R HS    P  ++ ++  M  +G   + +TFPF+LK+C+++        +H+ ++K GL 
Sbjct: 61  RSHS-RFFPSHSLSYFFSMRSNGIPLDNFTFPFVLKACSRLQI---NLHLHSLIVKYGLG 116

Query: 163 SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222
           SD FV  +LI +Y   G LE A  VF++ S RD+VS++ +I  + + GY  +A  LF++M
Sbjct: 117 SDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKM 176

Query: 223 PIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282
            + E+  VP+E T+++V+SA +H+G LELG WV + I   G G ++ +  ALIDM+S+CG
Sbjct: 177 QL-EDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGFGVSVALGTALIDMFSRCG 235

Query: 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
            + ++  +FE +  R+V++W  +I G        EAL +F  M +S ++P+ VTF  VL 
Sbjct: 236 SIDESIVVFEKMAVRNVLTWTALINGLGIHGRSMEALAMFHSMRKSGVQPDYVTFSGVLV 295

Query: 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA 402
           AC++ G +  G  I   I K +     +  +  ++D+  + G +  A    + M  K  +
Sbjct: 296 ACSHGGLVKEGWDIFESIRKVYGMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNS 355

Query: 403 -SWNAMISGLAMH---GKADKALSLFSRM 427
             W  ++     H   G A+K  +  S++
Sbjct: 356 IIWRTLLGACVNHNNLGLAEKVKAKISKI 384



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 138/276 (50%), Gaps = 7/276 (2%)

Query: 36  LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ 95
           +L  C+ +Q    +HS I+K GL +  F  + LI  C     G L  A+ VF+ + E + 
Sbjct: 93  VLKACSRLQINLHLHSLIVKYGLGSDIFVQNALI--CVYGYCGSLEMAVKVFDEMSERDS 150

Query: 96  VIWNNIIRGHSLSSSPVVAIKFYVRMILSG-FVPNTYTFPFILKSCAKISAISEGKQIHA 154
           V W+ +I     +     A+  + +M L    VP+  T   ++ + + +  +  G+ + A
Sbjct: 151 VSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRA 210

Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214
            + +LG      + T+LI+M+++ G ++ + +VF K ++R+ +++TALI G    G   +
Sbjct: 211 FIGRLGFGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGIHGRSME 270

Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELG-NWVCSLIEGHGLGSNLHVTNA 273
           A  +F  M  R+    P+  T   VL AC+H G ++ G +   S+ + +G+   L     
Sbjct: 271 ALAMFHSM--RKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYGMDPLLDHYGC 328

Query: 274 LIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGG 308
           ++D+  + G L +A D  E +  K + I W  ++G 
Sbjct: 329 MVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGA 364


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 253/670 (37%), Positives = 388/670 (57%), Gaps = 25/670 (3%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
           + VH+Q IK G  +T F  + L+ + A    G +  A +VF  +   + V WN ++ G  
Sbjct: 177 QHVHAQSIKFGCCSTVFVCNSLMNMYA--KCGLVEEARVVFCRMETRDMVSWNTLMAGLV 234

Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
           L+   + A++ +     S  +    T+  ++  CA +  +   +Q+H+ VLK G  S   
Sbjct: 235 LNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGN 294

Query: 167 VHTSLINMYAQNGELESARLVFN-KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
           V T+L++ Y + G+L+ A  VF   S  ++ VS+TA+I G    G +  A  LF  M  R
Sbjct: 295 VMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRM--R 352

Query: 226 EENFVPNESTVVTVLSACA-------HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMY 278
           E+   PN+ T  T+L+          H   ++  N+ C+   G           AL+  Y
Sbjct: 353 EDGVAPNDLTYSTILTVSEASFPPQIHAQVIKT-NYECTPTVG----------TALMVSY 401

Query: 279 SKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
           SK     +A  +F+ I+++DV+SW+ M+  Y    D   A   F +M    ++PN+ T  
Sbjct: 402 SKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTIS 461

Query: 339 SVLPACAYLGA-LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG 397
           S + ACA   A +DLG+  HA I   H+  + + + ++L+ MYA+ G+I+ A+ VF+   
Sbjct: 462 SAIDACASPAAGVDLGRQFHA-ISIKHRCHDALCVSSALVSMYARKGSIENAQCVFERQT 520

Query: 398 YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
            + L SWN+M+SG A HG + KAL +F +M  EG+  D +TF+ V+  C HAGL++ G+Q
Sbjct: 521 DRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQ 580

Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
           YF+ M++DY I+P + HY CMVDL  RAG  DE  +L++ M       IW +LLGACRVH
Sbjct: 581 YFDLMVRDYGITPTMDHYACMVDLYSRAGKLDETMSLIEGMPFPAGPTIWRALLGACRVH 640

Query: 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577
             +ELG+  A+ LL LEP +   YVLLSN+Y+ AG+W +   +R  ++ K ++K  GCS 
Sbjct: 641 KNVELGKLAAEKLLSLEPLDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVRKEAGCSW 700

Query: 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALS 637
           I++ + VH F+  DK HP S+ IY  L  + A L++ G+ PDTS V +D+ E+ KE  L+
Sbjct: 701 IQIKNKVHFFIASDKSHPLSEQIYAKLRAMTAKLKQEGYCPDTSFVPHDVAEDQKEAMLA 760

Query: 638 HHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFK 697
            HSE+LA+A+GLI+T P   + I KNLRV G+ H+  K++S+I +REI+ RD  RFHHFK
Sbjct: 761 MHSERLALAFGLIATPPAAPLHIFKNLRVSGDGHTVMKMVSEIEDREIVMRDCCRFHHFK 820

Query: 698 DGNCSCNDYW 707
            G CSC D+W
Sbjct: 821 SGVCSCGDFW 830



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 133/435 (30%), Positives = 219/435 (50%), Gaps = 11/435 (2%)

Query: 86  VFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145
           VFE + + N V W +++ G+  +   +  +  + RM   G  PN +TF  +L   A    
Sbjct: 113 VFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGM 172

Query: 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITG 205
           +  G+ +HA  +K G  S  FV  SL+NMYA+ G +E AR+VF +   RD VS+  L+ G
Sbjct: 173 VDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAG 232

Query: 206 YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265
               G   +A QLF +   R    +  EST  TV++ CA++  L L   + S +  HG  
Sbjct: 233 LVLNGRDLEALQLFHDS--RSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFH 290

Query: 266 SNLHVTNALIDMYSKCGDLVKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
           S  +V  AL+D Y+K G L KA D+F  +   ++V+SW  MI G     D   A  LF +
Sbjct: 291 SYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSR 350

Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384
           M +  + PND+T+ ++L     +        IHA + K + +    ++ T+L+  Y+K  
Sbjct: 351 MREDGVAPNDLTYSTILT----VSEASFPPQIHAQVIKTNYECTP-TVGTALMVSYSKLC 405

Query: 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444
           + + A  +F  +  K + SW+AM++  A  G  + A + F +M   GL+P++ T    + 
Sbjct: 406 STEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAID 465

Query: 445 AC-NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
           AC + A  +D+GRQ F+A+   ++    L     +V +  R G  + A+ + +  +   D
Sbjct: 466 ACASPAAGVDLGRQ-FHAISIKHRCHDALCVSSALVSMYARKGSIENAQCVFER-QTDRD 523

Query: 504 AAIWTSLLGACRVHG 518
              W S+L     HG
Sbjct: 524 LLSWNSMLSGYAQHG 538



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 123/378 (32%), Positives = 193/378 (51%), Gaps = 11/378 (2%)

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLE-SDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
           I+K C  +     GKQ+HA  ++ G +  D  V TSL++MY     +   R VF     R
Sbjct: 61  IIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKR 120

Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254
           + V++T+L+TGY   G L D   LF  M  R E   PN  T  +VLS  A  G ++LG  
Sbjct: 121 NVVTWTSLLTGYIQAGVLLDVMSLFFRM--RAEGVWPNPFTFSSVLSMVASQGMVDLGQH 178

Query: 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314
           V +     G  S + V N+L++MY+KCG + +AR +F  +E RD++SWN ++ G      
Sbjct: 179 VHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGR 238

Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
             EAL LF     S     + T+ +V+  CA L  L L + +H+ + K H   +  ++ T
Sbjct: 239 DLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLK-HGFHSYGNVMT 297

Query: 375 SLIDMYAKCGNIKAAEQVFDGM-GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
           +L+D Y K G +  A  VF  M G + + SW AMI G   +G    A +LFSRM  +G+ 
Sbjct: 298 ALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVA 357

Query: 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493
           P+D+T+  +L+    +    I  Q       +Y+ +P +     MV    +    +EA +
Sbjct: 358 PNDLTYSTILTVSEASFPPQIHAQVIKT---NYECTPTVG-TALMVS-YSKLCSTEEALS 412

Query: 494 LLKTMEMKPDAAIWTSLL 511
           + K ++ K D   W+++L
Sbjct: 413 IFKMIDQK-DVVSWSAML 429



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 138/276 (50%), Gaps = 11/276 (3%)

Query: 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALM 320
           GH  G ++ V  +L+DMY     ++  R +FE + KR+V++W  ++ GY       + + 
Sbjct: 85  GHDHG-DIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMS 143

Query: 321 LFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMY 380
           LF +M    + PN  TF SVL   A  G +DLG+ +HA   K     + V +  SL++MY
Sbjct: 144 LFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIK-FGCCSTVFVCNSLMNMY 202

Query: 381 AKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFV 440
           AKCG ++ A  VF  M  + + SWN +++GL ++G+  +AL LF           + T+ 
Sbjct: 203 AKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYS 262

Query: 441 GVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG----CMVDLLGRAGLFDEAEALLK 496
            V++ C +   L + RQ  +++++          YG     ++D   +AG  D+A  +  
Sbjct: 263 TVINLCANLKHLGLARQLHSSVLKH-----GFHSYGNVMTALMDAYNKAGQLDKALDVFL 317

Query: 497 TMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532
            M    +   WT+++  C  +G + L  ++   + E
Sbjct: 318 LMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMRE 353



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 91/183 (49%), Gaps = 2/183 (1%)

Query: 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
            L ++  C  +    LGK +HA   +      ++ + TSL+DMY    ++    +VF+GM
Sbjct: 58  LLGIIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGM 117

Query: 397 GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR 456
             + + +W ++++G    G     +SLF RM  EG+ P+  TF  VLS     G++D+G 
Sbjct: 118 LKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLG- 176

Query: 457 QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRV 516
           Q+ +A    +     +     ++++  + GL +EA  +   ME + D   W +L+    +
Sbjct: 177 QHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETR-DMVSWNTLMAGLVL 235

Query: 517 HGR 519
           +GR
Sbjct: 236 NGR 238


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 243/667 (36%), Positives = 379/667 (56%), Gaps = 6/667 (0%)

Query: 42   NMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNI 101
            N++  + +H  ++K GL +     + L+ +   S  G    A LVF+ + E + + WN++
Sbjct: 1063 NLKWGRGIHGLVVKLGLDSNVCICNTLLTL--YSEAGRSEDAELVFQAMTERDLISWNSM 1120

Query: 102  IRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGL 161
            +  +      +  +K    ++  G V N  TF   L +C+    + E K +HA ++  G 
Sbjct: 1121 MACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGF 1180

Query: 162  ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDE 221
                 V  +L+ MY + G +  A+ V       D V++ ALI G+A     ++A + +  
Sbjct: 1181 HDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYK- 1239

Query: 222  MPIREENFVPNESTVVTVLSACAHMGSL-ELGNWVCSLIEGHGLGSNLHVTNALIDMYSK 280
              IRE+    N  T+V+VL AC+    L + G  + + I   G  S+ +V N+LI MY+K
Sbjct: 1240 -LIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAK 1298

Query: 281  CGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSV 340
            CGDL  +  +F+ +  +  I+WN M+    H    +EAL +F +M    +  +  +F   
Sbjct: 1299 CGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGG 1358

Query: 341  LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT 400
            L A A L  L+ G+ +H  + K   + +++ +  + +DMY KCG +    ++      ++
Sbjct: 1359 LAATANLAVLEEGQQLHGLVIKLGFE-SDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRS 1417

Query: 401  LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFN 460
              SWN +IS  A HG   KA   F  M+  G +PD +TFV +LSACNH GL+D G  Y++
Sbjct: 1418 RLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYD 1477

Query: 461  AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRL 520
            +M +++ + P ++H  C++DLLGR+G    AE  +K M + P+   W SLL ACR+HG L
Sbjct: 1478 SMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNL 1537

Query: 521  ELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEV 580
            EL    A+HLLEL+P +  AYVL SN+ A +G+W+DV  +R  +    +KK P CS +++
Sbjct: 1538 ELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKL 1597

Query: 581  GSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHS 640
               VH F +G+K HPQ+  I   L E+  + +++G+VPDTS  L+DMDEE KE  L +HS
Sbjct: 1598 KDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHS 1657

Query: 641  EKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGN 700
            E+LA+A+GLI+T   +T+RI KNLRVCG+CHS  K +S I  R+I+ RD  RFHHF  G 
Sbjct: 1658 ERLALAFGLINTPESSTLRIFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGK 1717

Query: 701  CSCNDYW 707
            CSC DYW
Sbjct: 1718 CSCGDYW 1724



 Score =  338 bits (867), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 199/562 (35%), Positives = 313/562 (55%), Gaps = 16/562 (2%)

Query: 26  KLLQNQPS-------LALLSKCTNMQNIKQ---VHSQIIKTGLHNTQFALSKLIEICAVS 75
           KLL + P+       L +L  C + +  KQ   +H+ +I  G  +     +KLI      
Sbjct: 19  KLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYV-- 76

Query: 76  PFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPF 135
             GD+  A  VF+ + E + V W  ++ G+S +     A   +  M   G   N +T+  
Sbjct: 77  KVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGS 136

Query: 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD 195
            L++C  +  +  G Q+   + K     + FV ++L++ +++ G++E A  +F     RD
Sbjct: 137 ALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERD 196

Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255
            VS+ A+I GYA +G+ DD+  +F  M       VP+  T+ +VL A A  G L + N +
Sbjct: 197 VVSWNAMIGGYAVQGFADDSFCMFRSM--LRGGLVPDCYTLGSVLRASAEGGGLIIANQI 254

Query: 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315
             +I   G GS   VT  LI+ Y+K G L  A+DL + + K+D+ S   +I GY H   Y
Sbjct: 255 HGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIY 314

Query: 316 K-EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374
             +AL LF++M Q NI  +DV   S+L  CA L +  LG  IHA+  K +Q   +V++  
Sbjct: 315 SVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALK-YQPSYDVAMGN 373

Query: 375 SLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
           +LIDMYAK G I+ A++ FD M  K + SW ++ISG A HG    A+SL+ +M  +G +P
Sbjct: 374 ALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKP 433

Query: 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494
           +D+TF+ +L AC+H GL   G + FN M+  Y I P+ +HY CMVDL  R GL +EA  L
Sbjct: 434 NDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNL 493

Query: 495 LKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554
           L  +++K +A++W ++LGA  ++G + LG+  A +L  ++PEN   YV+L+++Y+ AG W
Sbjct: 494 LCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSAAGLW 553

Query: 555 DDVATIRTRLNDKGMKKVPGCS 576
           DD   IR  + ++  KK  G S
Sbjct: 554 DDAWKIRKLMEERSTKKNAGYS 575



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 144/523 (27%), Positives = 259/523 (49%), Gaps = 12/523 (2%)

Query: 37   LSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQV 96
             S+ T+    K +H+  I   ++   F  + LI +   S FG++ +A  VF+ +R  N+ 
Sbjct: 754  FSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINM--YSKFGNIEHARYVFDEMRHRNEA 811

Query: 97   IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAIS-EGKQIHAH 155
             W+ ++ G+        A+  + +M   G  PN +    ++ +C++   ++ EG Q+H  
Sbjct: 812  SWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGF 871

Query: 156  VLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDA 215
            V+K G+  D +V T+L++ Y   G + +A+ +F +    + VS+T+L+ GY+  G   + 
Sbjct: 872  VVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEV 931

Query: 216  RQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALI 275
              ++  M  R+E    N++T  TV S+C  +    LG  V   I  +G   ++ V N+LI
Sbjct: 932  LNVYQRM--RQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLI 989

Query: 276  DMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV 335
             M+S    + +A  +F+ + + D+ISWN MI  Y H    +E+L  F  M   + E N  
Sbjct: 990  SMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNST 1049

Query: 336  TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
            T  S+L  C+ +  L  G+ IH  + K     +NV +  +L+ +Y++ G  + AE VF  
Sbjct: 1050 TLSSLLSVCSSVDNLKWGRGIHGLVVKLGLD-SNVCICNTLLTLYSEAGRSEDAELVFQA 1108

Query: 396  MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
            M  + L SWN+M++     GK    L + + ++  G   + +TF   L+AC++   L I 
Sbjct: 1109 MTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECL-IE 1167

Query: 456  RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACR 515
             +  +A+I        L     +V + G+ G+  EA+ +L+TM  +PD   W +L+G   
Sbjct: 1168 SKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGG-- 1224

Query: 516  VHGR-LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557
             H    E  E+V  + L  E   P  Y+ + ++       DD+
Sbjct: 1225 -HAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDL 1266



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 114/407 (28%), Positives = 203/407 (49%), Gaps = 10/407 (2%)

Query: 129  NTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF 188
            N   FP  LK  ++I++   GK +HA  +   +    F   +LINMY++ G +E AR VF
Sbjct: 745  NAVNFP--LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVF 802

Query: 189  NKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS 248
            ++   R+  S++ +++GY   G  ++A  LF +M        PN   V ++++AC+  G 
Sbjct: 803  DEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQM--WGLGVEPNGFMVASLITACSRSGY 860

Query: 249  L-ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIG 307
            + + G  V   +   G+  +++V  AL+  Y   G +  A+ LFE +   +V+SW  ++ 
Sbjct: 861  MADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMV 920

Query: 308  GYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL 367
            GY+ + +  E L ++++M Q  +  N  TF +V  +C  L    LG  +  +I + +   
Sbjct: 921  GYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQ-YGFE 979

Query: 368  NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427
            ++VS+  SLI M++   +++ A  VFD M    + SWNAMIS  A HG   ++L  F  M
Sbjct: 980  DSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWM 1039

Query: 428  IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487
                 + +  T   +LS C+    L  GR   + ++    +   +     ++ L   AG 
Sbjct: 1040 RHLHNETNSTTLSSLLSVCSSVDNLKWGRG-IHGLVVKLGLDSNVCICNTLLTLYSEAGR 1098

Query: 488  FDEAEALLKTMEMKPDAAIWTSLLGACRVH-GRLELGESVAKHLLEL 533
             ++AE + + M  + D   W S++ AC V  G+   G  +   LL++
Sbjct: 1099 SEDAELVFQAMTER-DLISWNSMM-ACYVQDGKCLDGLKILAELLQM 1143


>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/578 (39%), Positives = 354/578 (61%), Gaps = 11/578 (1%)

Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTS-LINMYAQNG---ELESARLVFNK 190
           ++LK C   + I E KQ+HA  +KL L        S ++   A +G    +  A  +F  
Sbjct: 36  YLLKRC---NNIDEFKQVHARFIKLSLFCSSSFSASSVLAKCAHSGWENSMNYAASIFRG 92

Query: 191 SSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250
                   +  +I GY +    + A   ++EM   E    P+  T   +L AC  + ++ 
Sbjct: 93  IDDPCTFDFKTMIRGYVNEMSFEVALCFYNEM--MERGIEPDNFTYPCLLKACTRLKAIR 150

Query: 251 LGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYT 310
            G  +   +   GL +++ V N+LI+MY +CG++  +  +FE +E +   SW+ M     
Sbjct: 151 EGKQIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAASWSSMFSACV 210

Query: 311 HTSDYKEALMLFRQML-QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNN 369
               + E LMLFR+M  ++N++  +   +S L ACA  GAL+LG  IH ++ +N  +LN 
Sbjct: 211 GMGMWSECLMLFREMCRETNLKAEESGMVSALSACANTGALNLGMSIHGFLLRNISELN- 269

Query: 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG 429
           + + TSL+DMY KCG I  A  +F  M  +   +++AMISG A+HG+ + AL +FS MI 
Sbjct: 270 IIVKTSLVDMYVKCGCIDNALHIFQKMEKRNNLTYSAMISGFALHGEGESALRMFSEMIK 329

Query: 430 EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489
           EGL+PD + +V +L+AC+H+GL+  GR+ F  M+++ K+ P  +HYGC+VDLLGRAGL +
Sbjct: 330 EGLEPDHVVYVSLLNACSHSGLVKEGRRVFGEMLKEGKVEPTAEHYGCLVDLLGRAGLLE 389

Query: 490 EAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549
           EA   ++++ ++ +  +W S L  CRVH  +ELG+  A+ LL+L   NPG Y+L+SNMY+
Sbjct: 390 EALETIQSIPIEQNDVVWRSFLSQCRVHQNIELGQIAAQELLKLCSHNPGDYLLISNMYS 449

Query: 550 GAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDA 609
            A  WDDVA  RT +  KG+K+ PG S+++V    H F+  D+ HPQ K IY+ML +++ 
Sbjct: 450 QAHMWDDVARSRTEIAIKGLKQTPGFSTVKVKGKTHRFVSQDRSHPQCKEIYKMLHQMEW 509

Query: 610 LLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGN 669
            L+  G+ PD +++L ++DEE K+  L  HS+K+AIA+ L+ T PG+ I+I +NLR+C +
Sbjct: 510 QLKFEGYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFALLYTPPGSIIKIARNLRMCSD 569

Query: 670 CHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           CH+ TK IS I+ REI+ RDRNRFH FK G CSC DYW
Sbjct: 570 CHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 607



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 127/389 (32%), Positives = 215/389 (55%), Gaps = 4/389 (1%)

Query: 29  QNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSK-LIEICAVSPFGD-LSYALLV 86
           + Q  L LL +C N+   KQVH++ IK  L  +    +  ++  CA S + + ++YA  +
Sbjct: 30  KEQECLYLLKRCNNIDEFKQVHARFIKLSLFCSSSFSASSVLAKCAHSGWENSMNYAASI 89

Query: 87  FETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAI 146
           F  I +P    +  +IRG+    S  VA+ FY  M+  G  P+ +T+P +LK+C ++ AI
Sbjct: 90  FRGIDDPCTFDFKTMIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCLLKACTRLKAI 149

Query: 147 SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGY 206
            EGKQIH HV KLGLE+D FV  SLINMY + GE+E +  VF K   + A S++++ +  
Sbjct: 150 REGKQIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAASWSSMFSAC 209

Query: 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS 266
              G   +   LF EM  RE N    ES +V+ LSACA+ G+L LG  +   +  +    
Sbjct: 210 VGMGMWSECLMLFREM-CRETNLKAEESGMVSALSACANTGALNLGMSIHGFLLRNISEL 268

Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML 326
           N+ V  +L+DMY KCG +  A  +F+ +EKR+ ++++ MI G+    + + AL +F +M+
Sbjct: 269 NIIVKTSLVDMYVKCGCIDNALHIFQKMEKRNNLTYSAMISGFALHGEGESALRMFSEMI 328

Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
           +  +EP+ V ++S+L AC++ G +  G+ +   + K  +       +  L+D+  + G +
Sbjct: 329 KEGLEPDHVVYVSLLNACSHSGLVKEGRRVFGEMLKEGKVEPTAEHYGCLVDLLGRAGLL 388

Query: 387 KAAEQVFDGMGY-KTLASWNAMISGLAMH 414
           + A +    +   +    W + +S   +H
Sbjct: 389 EEALETIQSIPIEQNDVVWRSFLSQCRVH 417


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 253/660 (38%), Positives = 382/660 (57%), Gaps = 26/660 (3%)

Query: 49  VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLS 108
           VHS   K G  +  F  S LI+  A S    +S A  VF  I   + V+W  ++  +S +
Sbjct: 184 VHSCAWKLGHDHNAFVGSGLID--AYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSEN 241

Query: 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ-IHAHVLKLGLESDPFV 167
             P  A +                     +SC+ + AIS  +Q IH   +K   +++P V
Sbjct: 242 DCPENAFR-------------------CAQSCSLL-AISCARQGIHGCAIKTLNDTEPHV 281

Query: 168 HTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREE 227
             +L++MYA+ G+++ ARL F      D +  + +I+ YA     + A +LF  + +   
Sbjct: 282 GGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELF--LRLMRS 339

Query: 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA 287
           + +PNE ++ +VL AC +M  L+ G  + +     G  S+L V NAL+D Y+KC D+  +
Sbjct: 340 SVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSS 399

Query: 288 RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347
             +F S+   + +SWN ++ G++ +   +EAL +F +M  + +    VT+ SVL ACA  
Sbjct: 400 LKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACAST 459

Query: 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM 407
            ++     IH  I+K+    N+  +  SLID YAKCG I+ A +VF  +  + + SWNA+
Sbjct: 460 ASIRHAGQIHCSIEKSTFN-NDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAI 518

Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467
           ISG A+HG+A  AL LF RM    ++ +DITFV +LS C   GL++ G   F++M  D+ 
Sbjct: 519 ISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHG 578

Query: 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527
           I P ++HY C+V LLGRAG  ++A   +  +   P A +W +LL +C +H  + LG   A
Sbjct: 579 IKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSA 638

Query: 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEF 587
           + +LE+EP++   YVLLSNMYA AG  D VA +R  + + G++KVPG S +E+   +H F
Sbjct: 639 EKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAF 698

Query: 588 LVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAY 647
            VG   HP  + I  ML+ ++    + G++PD + VL+D+D+E K   L  HSE+LA+AY
Sbjct: 699 SVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAY 758

Query: 648 GLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
           GL+ T PG  IRI+KNLR C +CH+A  +ISKI  REII RD NRFHHF+DG CSC DYW
Sbjct: 759 GLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 818



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 135/509 (26%), Positives = 234/509 (45%), Gaps = 66/509 (12%)

Query: 47  KQVHSQIIKTGLHNTQFALSKLIEICA------VSPFGDLSYALLVFETIREPNQVIWNN 100
           + VH  +++ G       + +L   CA          G L+ A  +F+ + E N V +  
Sbjct: 79  RAVHGHVVRRG------GVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVT 132

Query: 101 IIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLG 160
           +++ H+       A   + R+   G   N +    +LK    + A      +H+   KLG
Sbjct: 133 LVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLG 192

Query: 161 LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFD 220
            + + FV + LI+ Y+    +  A  VFN    +DAV +TA+++ Y+            +
Sbjct: 193 HDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSE-----------N 241

Query: 221 EMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL----GSNLHVTNALID 276
           + P  E  F   +S  +  +S CA  G           I G  +     +  HV  AL+D
Sbjct: 242 DCP--ENAFRCAQSCSLLAIS-CARQG-----------IHGCAIKTLNDTEPHVGGALLD 287

Query: 277 MYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVT 336
           MY+KCGD+  AR  FE I   DVI  + MI  Y  ++  ++A  LF ++++S++ PN+ +
Sbjct: 288 MYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYS 347

Query: 337 FLSVLPACAYLGALDLGKWIHAY-IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
             SVL AC  +  LD GK IH + I   H+  +++ +  +L+D YAKC ++ ++ ++F  
Sbjct: 348 LSSVLQACTNMVQLDFGKQIHNHAIKIGHE--SDLFVGNALMDFYAKCNDMDSSLKIFSS 405

Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC------NHA 449
           +      SWN ++ G +  G  ++ALS+F  M    +    +T+  VL AC       HA
Sbjct: 406 LRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHA 465

Query: 450 GLL--DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIW 507
           G +   I +  FN    D  I   L      +D   + G   +A  + + + M+ D   W
Sbjct: 466 GQIHCSIEKSTFN---NDTVIGNSL------IDTYAKCGYIRDALKVFQHL-MERDIISW 515

Query: 508 TSLLGACRVHGR----LELGESVAKHLLE 532
            +++    +HG+    LEL + + K  +E
Sbjct: 516 NAIISGYALHGQAADALELFDRMNKSNVE 544


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.320    0.136    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,112,723,641
Number of Sequences: 23463169
Number of extensions: 459681654
Number of successful extensions: 1398022
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8962
Number of HSP's successfully gapped in prelim test: 3599
Number of HSP's that attempted gapping in prelim test: 1169666
Number of HSP's gapped (non-prelim): 60166
length of query: 707
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 557
effective length of database: 8,839,720,017
effective search space: 4923724049469
effective search space used: 4923724049469
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 81 (35.8 bits)