BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043060
(707 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 484 RAGLFDEA-EALLKTMEMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541
+ G +DEA E K +E+ P+ A W +L A G + + LEL+P N A+
Sbjct: 21 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW 80
Query: 542 VLLSNMYAGAGRWDD 556
L N Y G +D+
Sbjct: 81 YNLGNAYYKQGDYDE 95
>pdb|2QFC|A Chain A, Crystal Structure Of Bacillus Thuringiensis Plcr Complexed
With Papr
pdb|2QFC|B Chain B, Crystal Structure Of Bacillus Thuringiensis Plcr Complexed
With Papr
pdb|3U3W|A Chain A, Crystal Structure Of Bacillus Thuringiensis Plcr In
Complex With The Peptide Papr7 And Dna
pdb|3U3W|B Chain B, Crystal Structure Of Bacillus Thuringiensis Plcr In
Complex With The Peptide Papr7 And Dna
Length = 293
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 249 LELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR 297
LEL + + G + NL++ NA+ ++Y++ G L K DLFE I K+
Sbjct: 136 LELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184
>pdb|1UAS|A Chain A, Crystal Structure Of Rice Alpha-Galactosidase
Length = 362
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 118 YVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHT 169
Y R FVPN TFP +K+ A +HA LKLG+ SD T
Sbjct: 57 YSRDSQGNFVPNRQTFPSGIKALADY--------VHAKGLKLGIYSDAGSQT 100
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 32.7 bits (73), Expect = 0.68, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 484 RAGLFDEA-EALLKTMEMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541
+ G +DEA E K +E+ P+ A W +L A G + + LEL P N A+
Sbjct: 21 KQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAW 80
Query: 542 VLLSNMYAGAGRWDD 556
L N Y G +D+
Sbjct: 81 YNLGNAYYKQGDYDE 95
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 484 RAGLFDEA-EALLKTMEMKPDAA-IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541
+ G +DEA E K +E+ P +A W +L A G + + LEL+P + A+
Sbjct: 13 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW 72
Query: 542 VLLSNMYAGAGRWDD 556
L N Y G +D+
Sbjct: 73 YNLGNAYYKQGDYDE 87
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 484 RAGLFDEA-EALLKTMEMKPDAA-IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541
+ G +DEA E K +E+ P +A W +L A G + + LEL+P + A+
Sbjct: 47 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW 106
Query: 542 VLLSNMYAGAGRWDD 556
L N Y G +D+
Sbjct: 107 YNLGNAYYKQGDYDE 121
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 472 LQHYGCMVDLLGRAGLFDEA-EALLKTMEMKPDAAIWTSLLGACRVH--GRLELGESVAK 528
L Y + ++L A +FD A A L+ + + P+ A+ L AC + G ++L +
Sbjct: 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL-ACVYYEQGLIDLAIDTYR 261
Query: 529 HLLELEPENPGAYVLLSN 546
+EL+P P AY L+N
Sbjct: 262 RAIELQPHFPDAYCNLAN 279
>pdb|1EL9|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylthio]acetate
pdb|1EL9|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylthio]acetate
pdb|1ELI|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Pyrrole-2- Carboxylate
pdb|1ELI|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Pyrrole-2- Carboxylate
Length = 389
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
+ID++ + N+ A F G G+K + ++S LA+ GK + +S+FS
Sbjct: 326 IIDLHPEHSNVVIAAG-FSGHGFKFSSGVGEVLSQLALTGKTEHDISIFS 374
>pdb|3M12|A Chain A, Crystal Structure Of The Lys265arg Phosphate-Crytsallized
Mu Monomeric Sarcosine Oxidase
pdb|3M12|B Chain B, Crystal Structure Of The Lys265arg Phosphate-Crytsallized
Mu Monomeric Sarcosine Oxidase
pdb|3M13|A Chain A, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
pdb|3M13|B Chain B, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
pdb|3M13|C Chain C, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
pdb|3M13|D Chain D, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
Length = 389
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
+ID++ + N+ A F G G+K + ++S LA+ GK + +S+FS
Sbjct: 326 IIDLHPEHSNVVIAAG-FSGHGFKFSSGVGEVLSQLALTGKTEHDISIFS 374
>pdb|3M0O|A Chain A, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
pdb|3M0O|B Chain B, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
Length = 389
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
+ID++ + N+ A F G G+K + ++S LA+ GK + +S+FS
Sbjct: 326 IIDLHPEHSNVVIAAG-FSGHGFKFSSGVGEVLSQLALTGKTEHDISIFS 374
>pdb|1EL5|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Dimethylglycine
pdb|1EL5|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Dimethylglycine
pdb|1EL7|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methytelluro]acetate
pdb|1EL7|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methytelluro]acetate
pdb|1EL8|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylseleno]cetate
pdb|1EL8|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylseleno]cetate
pdb|1L9E|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9E|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|2A89|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2A89|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GF3|A Chain A, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|2GF3|B Chain B, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|3QSE|A Chain A, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSE|B Chain B, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSM|A Chain A, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSM|B Chain B, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSS|A Chain A, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
pdb|3QSS|B Chain B, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
Length = 389
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
+ID++ + N+ A F G G+K + ++S LA+ GK + +S+FS
Sbjct: 326 IIDLHPEHSNVVIAAG-FSGHGFKFSSGVGEVLSQLALTGKTEHDISIFS 374
>pdb|3BHF|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHF|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHK|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
pdb|3BHK|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
Length = 390
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
+ID++ + N+ A F G G+K + ++S LA+ GK + +S+FS
Sbjct: 327 IIDLHPEHSNVVIAAG-FSGHGFKFSSGVGEVLSQLALTGKTEHDISIFS 375
>pdb|1L9C|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9C|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9D|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9D|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
Length = 389
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425
+ID++ + N+ A F G G+K + ++S LA+ GK + +S+FS
Sbjct: 326 IIDLHPEHSNVVIAAG-FSGHGFKFSSGVGEVLSQLALTGKTEHDISIFS 374
>pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein
Ifit5
pdb|4HOR|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligocytidine
pdb|4HOS|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligouridine
pdb|4HOT|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligoadenine
pdb|4J0U|A Chain A, Crystal Structure Of Ifit5/isg58
Length = 482
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 157 LKLGLESD---PFVHTSLINMYAQNGELESARLVFNKS 191
K +E D F +T L NMYA+ G+ +A +F K+
Sbjct: 327 FKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKA 364
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,005,610
Number of Sequences: 62578
Number of extensions: 852451
Number of successful extensions: 2154
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2144
Number of HSP's gapped (non-prelim): 26
length of query: 707
length of database: 14,973,337
effective HSP length: 106
effective length of query: 601
effective length of database: 8,340,069
effective search space: 5012381469
effective search space used: 5012381469
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)