Query 043060
Match_columns 707
No_of_seqs 837 out of 5086
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 12:26:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 8E-128 2E-132 1101.9 74.5 672 26-705 183-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 4E-121 8E-126 1022.3 69.0 613 92-707 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 3.9E-81 8.4E-86 716.6 57.0 649 28-702 84-746 (857)
4 PLN03218 maturation of RBCL 1; 100.0 6.5E-66 1.4E-70 578.1 57.2 502 59-572 367-914 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1.8E-63 3.9E-68 558.5 55.9 497 32-534 372-910 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 4.4E-64 9.6E-69 562.2 47.2 434 28-469 121-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 9.2E-31 2E-35 307.4 55.5 522 32-570 334-869 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-30 2.6E-35 306.5 56.2 520 33-569 301-834 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 2.9E-31 6.3E-36 218.0 8.2 106 574-697 2-116 (116)
10 PRK11447 cellulose synthase su 99.9 3.3E-22 7.1E-27 235.6 56.6 513 34-566 119-739 (1157)
11 PRK11447 cellulose synthase su 99.9 3.1E-22 6.8E-27 235.8 53.0 511 40-567 41-666 (1157)
12 KOG4626 O-linked N-acetylgluco 99.9 2.9E-22 6.2E-27 199.2 36.2 446 98-559 51-511 (966)
13 KOG4626 O-linked N-acetylgluco 99.9 1.3E-21 2.8E-26 194.6 29.6 420 135-570 53-488 (966)
14 PRK09782 bacteriophage N4 rece 99.9 1.4E-18 2.9E-23 195.7 51.8 508 41-568 58-707 (987)
15 PRK09782 bacteriophage N4 rece 99.9 1.9E-18 4.2E-23 194.4 48.4 477 73-569 53-674 (987)
16 TIGR00990 3a0801s09 mitochondr 99.9 1E-18 2.2E-23 193.5 41.0 250 312-567 307-571 (615)
17 PRK11788 tetratricopeptide rep 99.9 5E-19 1.1E-23 186.2 30.0 293 278-576 45-356 (389)
18 PRK11788 tetratricopeptide rep 99.8 2.2E-18 4.9E-23 181.2 31.6 286 206-532 45-346 (389)
19 PRK10049 pgaA outer membrane p 99.8 1E-16 2.2E-21 180.9 46.0 396 138-567 23-456 (765)
20 TIGR00990 3a0801s09 mitochondr 99.8 7E-17 1.5E-21 178.9 43.6 439 98-566 130-596 (615)
21 PRK15174 Vi polysaccharide exp 99.8 2.7E-17 5.9E-22 181.4 39.9 351 177-538 17-386 (656)
22 PRK15174 Vi polysaccharide exp 99.8 3.8E-17 8.3E-22 180.3 39.2 354 207-570 16-384 (656)
23 PRK10049 pgaA outer membrane p 99.8 7.3E-17 1.6E-21 182.0 42.0 373 162-569 12-424 (765)
24 KOG2002 TPR-containing nuclear 99.8 8.2E-16 1.8E-20 162.0 39.7 513 43-569 180-747 (1018)
25 PRK14574 hmsH outer membrane p 99.8 6.7E-15 1.5E-19 162.7 45.3 435 73-540 43-520 (822)
26 KOG2002 TPR-containing nuclear 99.8 1E-14 2.2E-19 153.8 43.0 479 80-569 146-677 (1018)
27 PRK14574 hmsH outer membrane p 99.8 1.2E-14 2.5E-19 160.9 44.2 435 105-569 44-515 (822)
28 KOG4422 Uncharacterized conser 99.7 2.1E-12 4.6E-17 124.3 39.4 302 30-366 119-465 (625)
29 KOG2003 TPR repeat-containing 99.7 8.1E-14 1.8E-18 134.5 29.9 273 276-554 427-710 (840)
30 KOG0495 HAT repeat protein [RN 99.7 1.3E-11 2.9E-16 124.9 44.5 458 105-580 416-891 (913)
31 KOG4422 Uncharacterized conser 99.6 6.5E-12 1.4E-16 121.0 37.5 439 95-569 116-592 (625)
32 KOG0495 HAT repeat protein [RN 99.6 2.6E-10 5.6E-15 115.8 47.0 421 137-569 383-848 (913)
33 KOG2076 RNA polymerase III tra 99.6 1.5E-11 3.2E-16 129.6 39.6 471 78-553 153-720 (895)
34 KOG0547 Translocase of outer m 99.6 2.3E-12 5.1E-17 126.2 30.5 421 99-566 119-565 (606)
35 PF13429 TPR_15: Tetratricopep 99.6 5.7E-15 1.2E-19 147.0 11.5 255 307-566 16-276 (280)
36 KOG1915 Cell cycle control pro 99.6 4.2E-11 9E-16 117.0 35.4 401 166-577 74-510 (677)
37 KOG2076 RNA polymerase III tra 99.6 8E-12 1.7E-16 131.6 31.8 327 247-578 153-523 (895)
38 KOG1915 Cell cycle control pro 99.5 5.9E-10 1.3E-14 109.1 39.0 481 76-565 85-623 (677)
39 PRK10747 putative protoheme IX 99.5 1.4E-11 2.9E-16 128.5 28.9 275 281-566 97-389 (398)
40 KOG1126 DNA-binding cell divis 99.5 2E-12 4.4E-17 132.0 21.4 272 283-565 334-618 (638)
41 KOG1155 Anaphase-promoting com 99.5 6.8E-11 1.5E-15 115.4 30.5 193 370-566 330-535 (559)
42 KOG1173 Anaphase-promoting com 99.5 1.7E-10 3.6E-15 115.7 33.4 257 302-566 247-517 (611)
43 PRK10747 putative protoheme IX 99.5 2.3E-11 5.1E-16 126.7 29.1 285 209-534 97-391 (398)
44 KOG1126 DNA-binding cell divis 99.5 3.1E-12 6.6E-17 130.7 21.6 244 315-566 335-585 (638)
45 TIGR00540 hemY_coli hemY prote 99.5 1E-10 2.2E-15 122.6 32.6 290 208-532 96-398 (409)
46 KOG1155 Anaphase-promoting com 99.5 2.4E-10 5.1E-15 111.7 30.7 257 305-566 233-494 (559)
47 KOG2003 TPR repeat-containing 99.5 2.8E-11 6E-16 117.3 23.8 427 132-567 200-689 (840)
48 TIGR00540 hemY_coli hemY prote 99.4 1.5E-10 3.2E-15 121.5 30.8 280 279-566 95-398 (409)
49 KOG4162 Predicted calmodulin-b 99.4 6.6E-09 1.4E-13 108.2 37.9 410 159-578 317-793 (799)
50 PF13429 TPR_15: Tetratricopep 99.4 1.5E-12 3.2E-17 129.6 11.1 250 274-532 14-276 (280)
51 KOG4318 Bicoid mRNA stability 99.4 2.1E-09 4.5E-14 113.1 33.5 486 49-571 12-598 (1088)
52 COG2956 Predicted N-acetylgluc 99.4 7.3E-10 1.6E-14 103.5 26.5 285 209-532 48-346 (389)
53 KOG2047 mRNA splicing factor [ 99.4 1.2E-07 2.6E-12 96.7 43.7 301 247-553 361-709 (835)
54 TIGR02521 type_IV_pilW type IV 99.3 3.2E-10 6.9E-15 109.8 23.7 198 369-567 30-232 (234)
55 COG3071 HemY Uncharacterized e 99.3 9.1E-09 2E-13 99.5 31.4 286 209-532 97-389 (400)
56 KOG0547 Translocase of outer m 99.3 4.9E-09 1.1E-13 103.3 30.0 412 72-534 123-567 (606)
57 COG2956 Predicted N-acetylgluc 99.3 1.6E-09 3.4E-14 101.3 25.1 297 282-587 49-367 (389)
58 KOG1173 Anaphase-promoting com 99.3 8.5E-09 1.8E-13 103.7 30.7 278 264-546 240-531 (611)
59 KOG1840 Kinesin light chain [C 99.3 1.3E-09 2.9E-14 112.9 26.2 231 335-565 200-477 (508)
60 KOG1174 Anaphase-promoting com 99.3 4.5E-08 9.8E-13 94.6 33.0 306 228-540 189-507 (564)
61 COG3071 HemY Uncharacterized e 99.3 4.4E-09 9.5E-14 101.6 25.9 276 281-565 97-388 (400)
62 PRK12370 invasion protein regu 99.3 1.7E-09 3.6E-14 118.0 25.8 245 314-569 276-537 (553)
63 KOG2047 mRNA splicing factor [ 99.3 1.3E-07 2.8E-12 96.5 36.5 490 62-566 102-686 (835)
64 KOG4318 Bicoid mRNA stability 99.2 4E-09 8.8E-14 111.0 26.4 486 92-618 22-598 (1088)
65 PF13041 PPR_2: PPR repeat fam 99.2 1.4E-11 3E-16 85.8 5.0 50 93-142 1-50 (50)
66 KOG2376 Signal recognition par 99.2 3.2E-07 7E-12 93.1 36.7 434 102-563 19-516 (652)
67 PF13041 PPR_2: PPR repeat fam 99.2 6.5E-11 1.4E-15 82.3 6.8 50 399-448 1-50 (50)
68 PRK12370 invasion protein regu 99.2 3.1E-09 6.6E-14 115.9 23.3 210 349-567 276-502 (553)
69 TIGR02521 type_IV_pilW type IV 99.2 1E-08 2.2E-13 99.2 24.0 196 299-533 31-232 (234)
70 PRK11189 lipoprotein NlpI; Pro 99.2 4.6E-09 1E-13 104.7 21.2 191 370-569 64-267 (296)
71 KOG3785 Uncharacterized conser 99.1 8.3E-07 1.8E-11 84.3 33.9 192 373-569 288-492 (557)
72 KOG3785 Uncharacterized conser 99.1 1.3E-07 2.9E-12 89.5 28.5 431 101-569 63-516 (557)
73 KOG1840 Kinesin light chain [C 99.1 5.3E-08 1.1E-12 101.2 28.4 233 268-532 199-478 (508)
74 KOG1129 TPR repeat-containing 99.1 3E-09 6.4E-14 99.5 16.8 226 303-570 227-461 (478)
75 COG3063 PilF Tfp pilus assembl 99.1 7.6E-09 1.6E-13 92.6 17.8 163 403-569 37-204 (250)
76 PRK11189 lipoprotein NlpI; Pro 99.1 3.3E-08 7.2E-13 98.6 24.7 225 314-547 41-280 (296)
77 KOG1174 Anaphase-promoting com 99.1 9.1E-07 2E-11 85.8 32.9 388 164-568 96-501 (564)
78 KOG0985 Vesicle coat protein c 99.1 1.2E-06 2.6E-11 93.7 35.1 467 72-573 614-1255(1666)
79 KOG1156 N-terminal acetyltrans 99.1 1.4E-06 3.1E-11 89.5 33.8 414 143-569 20-470 (700)
80 KOG4162 Predicted calmodulin-b 99.1 2E-07 4.4E-12 97.4 28.0 443 57-539 318-789 (799)
81 KOG0624 dsRNA-activated protei 99.0 5.8E-07 1.3E-11 85.0 27.5 212 343-571 164-398 (504)
82 KOG3616 Selective LIM binding 99.0 1.4E-06 3.1E-11 90.1 31.7 233 307-578 714-948 (1636)
83 KOG1156 N-terminal acetyltrans 99.0 1E-05 2.3E-10 83.3 36.2 124 438-564 373-508 (700)
84 PF12569 NARP1: NMDA receptor- 99.0 7.8E-06 1.7E-10 86.4 36.3 253 303-563 198-516 (517)
85 KOG1129 TPR repeat-containing 99.0 1.9E-08 4.2E-13 94.1 14.5 232 269-537 224-462 (478)
86 KOG0548 Molecular co-chaperone 98.9 5.2E-07 1.1E-11 90.8 24.0 89 479-567 365-455 (539)
87 PF04733 Coatomer_E: Coatomer 98.9 2.2E-07 4.7E-12 91.3 21.1 163 369-538 101-270 (290)
88 KOG3617 WD40 and TPR repeat-co 98.9 3.7E-06 8E-11 88.3 30.5 406 60-522 724-1189(1416)
89 KOG1125 TPR repeat-containing 98.9 6.6E-08 1.4E-12 97.9 16.7 218 345-566 296-526 (579)
90 COG3063 PilF Tfp pilus assembl 98.9 3.5E-07 7.6E-12 82.1 19.4 192 373-566 38-235 (250)
91 PRK04841 transcriptional regul 98.9 7E-05 1.5E-09 88.2 45.1 196 373-568 534-761 (903)
92 KOG4340 Uncharacterized conser 98.8 3E-06 6.5E-11 78.7 24.4 417 124-567 4-443 (459)
93 KOG1127 TPR repeat-containing 98.8 8.2E-06 1.8E-10 87.9 30.8 373 47-426 476-909 (1238)
94 PF12569 NARP1: NMDA receptor- 98.8 3.2E-06 7E-11 89.2 28.0 125 438-565 196-332 (517)
95 KOG0985 Vesicle coat protein c 98.8 6.1E-05 1.3E-09 81.3 35.8 463 43-566 854-1369(1666)
96 KOG2376 Signal recognition par 98.8 0.00015 3.2E-09 74.3 35.8 412 137-567 19-487 (652)
97 cd05804 StaR_like StaR_like; a 98.8 1.3E-05 2.8E-10 83.2 29.9 294 270-568 8-337 (355)
98 PF04733 Coatomer_E: Coatomer 98.8 3.2E-07 6.9E-12 90.1 16.7 190 369-568 65-266 (290)
99 KOG3616 Selective LIM binding 98.8 3.3E-05 7.1E-10 80.4 31.4 178 369-568 823-1025(1636)
100 KOG1070 rRNA processing protei 98.8 7.7E-07 1.7E-11 98.6 20.9 208 356-569 1446-1665(1710)
101 TIGR03302 OM_YfiO outer membra 98.7 1.3E-06 2.9E-11 84.4 19.5 180 369-568 32-233 (235)
102 KOG3617 WD40 and TPR repeat-co 98.7 0.00038 8.3E-09 73.8 37.8 205 60-295 755-994 (1416)
103 PRK10370 formate-dependent nit 98.7 1.7E-06 3.7E-11 80.2 18.2 148 408-569 23-175 (198)
104 PRK15359 type III secretion sy 98.7 5.4E-07 1.2E-11 79.0 13.7 122 422-549 14-137 (144)
105 KOG1127 TPR repeat-containing 98.7 3.1E-05 6.7E-10 83.6 28.8 458 80-564 474-993 (1238)
106 PLN02789 farnesyltranstransfer 98.7 1E-05 2.2E-10 80.6 24.0 209 351-565 54-300 (320)
107 PRK15359 type III secretion sy 98.6 1.7E-06 3.6E-11 75.9 15.5 96 474-569 26-123 (144)
108 cd05804 StaR_like StaR_like; a 98.6 9.5E-05 2.1E-09 76.6 31.3 191 342-534 122-337 (355)
109 KOG1125 TPR repeat-containing 98.6 3.7E-06 8.1E-11 85.6 19.4 217 243-464 295-526 (579)
110 KOG0624 dsRNA-activated protei 98.6 9.2E-05 2E-09 70.5 25.8 307 168-503 41-373 (504)
111 PRK15363 pathogenicity island 98.6 1.8E-06 4E-11 74.1 13.1 119 471-612 34-154 (157)
112 KOG1128 Uncharacterized conser 98.5 1.8E-05 3.8E-10 82.9 22.2 216 264-498 394-613 (777)
113 PF12854 PPR_1: PPR repeat 98.5 1.8E-07 3.9E-12 58.2 4.1 33 160-192 2-34 (34)
114 KOG1070 rRNA processing protei 98.5 2.5E-05 5.5E-10 87.1 23.0 212 232-444 1457-1679(1710)
115 PF12854 PPR_1: PPR repeat 98.5 2.4E-07 5.1E-12 57.7 4.4 33 263-295 2-34 (34)
116 KOG4340 Uncharacterized conser 98.5 2.9E-05 6.3E-10 72.4 19.4 304 235-563 12-335 (459)
117 KOG1914 mRNA cleavage and poly 98.5 0.0023 4.9E-08 65.2 34.0 130 59-193 17-165 (656)
118 TIGR03302 OM_YfiO outer membra 98.5 1.2E-05 2.5E-10 77.8 18.2 183 333-535 32-234 (235)
119 KOG0548 Molecular co-chaperone 98.4 0.00025 5.4E-09 72.0 27.0 434 73-562 11-484 (539)
120 PRK10370 formate-dependent nit 98.4 1.6E-05 3.5E-10 73.7 17.7 154 376-541 22-181 (198)
121 PRK15179 Vi polysaccharide bio 98.4 2.3E-05 4.9E-10 86.2 21.3 141 400-544 85-228 (694)
122 PRK04841 transcriptional regul 98.4 0.00011 2.4E-09 86.5 28.9 325 174-498 383-757 (903)
123 COG5010 TadD Flp pilus assembl 98.4 2.4E-05 5.1E-10 72.3 17.6 153 405-561 70-225 (257)
124 KOG1128 Uncharacterized conser 98.4 1.2E-05 2.5E-10 84.2 16.7 188 373-569 427-618 (777)
125 COG5010 TadD Flp pilus assembl 98.4 2.7E-05 5.9E-10 71.9 16.5 136 432-569 62-199 (257)
126 PLN02789 farnesyltranstransfer 98.3 5.6E-05 1.2E-09 75.4 19.7 191 372-566 39-249 (320)
127 TIGR02552 LcrH_SycD type III s 98.3 7.4E-06 1.6E-10 71.4 11.6 98 471-568 16-115 (135)
128 PRK15179 Vi polysaccharide bio 98.3 8E-05 1.7E-09 82.0 21.3 139 369-511 85-229 (694)
129 COG4783 Putative Zn-dependent 98.3 0.00012 2.6E-09 73.5 19.6 114 448-563 318-433 (484)
130 PRK14720 transcript cleavage f 98.2 0.00028 6E-09 78.6 22.9 165 235-429 33-197 (906)
131 TIGR02552 LcrH_SycD type III s 98.2 4.5E-05 9.7E-10 66.4 13.8 113 423-539 5-120 (135)
132 KOG3081 Vesicle coat complex C 98.2 0.0013 2.9E-08 60.9 23.0 157 374-537 112-275 (299)
133 COG4783 Putative Zn-dependent 98.2 0.00033 7.2E-09 70.5 20.2 147 400-568 305-455 (484)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 9.6E-05 2.1E-09 75.2 16.7 122 439-565 172-295 (395)
135 KOG1914 mRNA cleavage and poly 98.1 0.014 3.1E-07 59.7 37.5 440 93-564 18-536 (656)
136 KOG3060 Uncharacterized conser 98.1 0.0014 3.1E-08 60.2 21.2 168 374-544 56-231 (289)
137 TIGR00756 PPR pentatricopeptid 98.1 5.9E-06 1.3E-10 52.3 4.2 35 96-130 1-35 (35)
138 PRK14720 transcript cleavage f 98.1 0.0026 5.6E-08 71.1 27.0 233 267-549 30-268 (906)
139 TIGR00756 PPR pentatricopeptid 98.0 9.5E-06 2.1E-10 51.3 4.6 34 403-436 2-35 (35)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.0002 4.3E-09 73.0 15.9 128 370-502 169-298 (395)
141 PF09976 TPR_21: Tetratricopep 98.0 0.00021 4.5E-09 62.9 14.2 114 449-563 24-143 (145)
142 KOG2053 Mitochondrial inherita 98.0 0.047 1E-06 59.5 39.3 215 104-329 18-256 (932)
143 PF13414 TPR_11: TPR repeat; P 97.9 2.5E-05 5.4E-10 58.7 6.1 65 503-567 2-67 (69)
144 PF13812 PPR_3: Pentatricopept 97.9 1.4E-05 3.1E-10 50.1 4.0 34 95-128 1-34 (34)
145 cd00189 TPR Tetratricopeptide 97.9 9.3E-05 2E-09 59.4 10.1 93 475-567 3-97 (100)
146 KOG3081 Vesicle coat complex C 97.9 0.0031 6.7E-08 58.6 20.1 146 343-498 117-268 (299)
147 KOG3060 Uncharacterized conser 97.9 0.0012 2.7E-08 60.7 17.4 162 404-569 55-222 (289)
148 PF12895 Apc3: Anaphase-promot 97.9 1.7E-05 3.6E-10 62.3 4.9 78 485-563 2-83 (84)
149 PLN03088 SGT1, suppressor of 97.9 0.00017 3.7E-09 73.8 13.2 86 482-567 12-99 (356)
150 COG3898 Uncharacterized membra 97.9 0.0079 1.7E-07 58.9 23.1 242 311-567 132-392 (531)
151 PF13812 PPR_3: Pentatricopept 97.9 2.5E-05 5.5E-10 48.9 4.4 33 402-434 2-34 (34)
152 PF09976 TPR_21: Tetratricopep 97.9 0.00092 2E-08 58.8 15.9 124 404-531 15-145 (145)
153 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0002 4.3E-09 60.6 11.0 93 476-568 6-106 (119)
154 PF13432 TPR_16: Tetratricopep 97.8 5E-05 1.1E-09 56.2 6.0 60 510-569 3-62 (65)
155 KOG0553 TPR repeat-containing 97.8 0.0002 4.2E-09 67.7 11.0 106 446-553 91-198 (304)
156 KOG0550 Molecular chaperone (D 97.8 0.00064 1.4E-08 66.8 14.4 155 409-569 177-352 (486)
157 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00044 9.5E-09 58.5 12.3 104 439-542 5-114 (119)
158 PLN03088 SGT1, suppressor of 97.7 0.00055 1.2E-08 70.1 13.6 104 445-550 11-116 (356)
159 PRK10153 DNA-binding transcrip 97.7 0.0017 3.6E-08 69.5 17.7 142 397-569 333-484 (517)
160 PRK02603 photosystem I assembl 97.7 0.0012 2.5E-08 60.2 14.1 131 400-553 34-166 (172)
161 COG4235 Cytochrome c biogenesi 97.7 0.0006 1.3E-08 64.9 12.1 109 467-575 151-264 (287)
162 PF13432 TPR_16: Tetratricopep 97.7 0.00019 4.1E-09 53.0 7.0 61 478-538 3-65 (65)
163 PRK02603 photosystem I assembl 97.7 0.00054 1.2E-08 62.3 11.4 96 473-568 36-150 (172)
164 PF01535 PPR: PPR repeat; Int 97.7 5.8E-05 1.3E-09 46.0 3.4 31 96-126 1-31 (31)
165 KOG2280 Vacuolar assembly/sort 97.6 0.14 3E-06 54.9 30.7 359 104-497 398-795 (829)
166 KOG0553 TPR repeat-containing 97.6 0.00025 5.4E-09 67.0 8.5 91 479-569 88-180 (304)
167 CHL00033 ycf3 photosystem I as 97.6 0.00056 1.2E-08 62.0 10.7 93 472-564 35-139 (168)
168 PF01535 PPR: PPR repeat; Int 97.6 8E-05 1.7E-09 45.4 3.5 31 300-330 1-31 (31)
169 COG4700 Uncharacterized protei 97.6 0.0069 1.5E-07 53.0 15.7 133 432-567 85-222 (251)
170 PF05843 Suf: Suppressor of fo 97.5 0.0032 7E-08 62.1 15.8 134 402-538 2-141 (280)
171 PF04840 Vps16_C: Vps16, C-ter 97.5 0.12 2.7E-06 51.6 26.9 108 374-498 181-288 (319)
172 cd00189 TPR Tetratricopeptide 97.5 0.0013 2.8E-08 52.5 10.8 62 474-535 36-99 (100)
173 PF14559 TPR_19: Tetratricopep 97.5 0.00014 3.1E-09 54.3 4.4 55 515-569 2-56 (68)
174 PF07079 DUF1347: Protein of u 97.4 0.16 3.5E-06 51.2 30.5 61 504-565 460-522 (549)
175 PRK15331 chaperone protein Sic 97.4 0.0011 2.5E-08 57.4 9.6 89 478-566 43-133 (165)
176 PF13371 TPR_9: Tetratricopept 97.4 0.00039 8.5E-09 52.7 5.9 59 511-569 2-60 (73)
177 PF12895 Apc3: Anaphase-promot 97.4 0.00049 1.1E-08 53.9 6.6 77 414-496 2-82 (84)
178 PF13414 TPR_11: TPR repeat; P 97.4 0.00056 1.2E-08 51.2 6.2 65 471-535 2-69 (69)
179 KOG2053 Mitochondrial inherita 97.4 0.36 7.7E-06 53.0 41.3 99 75-176 54-155 (932)
180 CHL00033 ycf3 photosystem I as 97.3 0.004 8.7E-08 56.4 12.8 63 402-464 36-100 (168)
181 PF14559 TPR_19: Tetratricopep 97.3 0.0003 6.5E-09 52.5 4.4 61 484-544 3-65 (68)
182 PRK15363 pathogenicity island 97.3 0.017 3.7E-07 50.0 15.1 95 371-467 36-134 (157)
183 PF14938 SNAP: Soluble NSF att 97.3 0.013 2.7E-07 58.2 16.7 91 446-536 124-228 (282)
184 KOG2041 WD40 repeat protein [G 97.3 0.35 7.5E-06 51.4 27.4 180 127-324 689-877 (1189)
185 PF13431 TPR_17: Tetratricopep 97.2 0.00021 4.5E-09 44.4 2.1 32 527-558 2-33 (34)
186 COG4700 Uncharacterized protei 97.2 0.0073 1.6E-07 52.9 11.8 108 462-569 79-191 (251)
187 PRK10153 DNA-binding transcrip 97.2 0.0097 2.1E-07 63.8 15.6 102 468-569 333-451 (517)
188 KOG1130 Predicted G-alpha GTPa 97.2 0.0024 5.3E-08 62.6 9.9 128 438-565 197-342 (639)
189 PF08579 RPM2: Mitochondrial r 97.1 0.0052 1.1E-07 49.2 9.5 79 99-177 29-116 (120)
190 PF14938 SNAP: Soluble NSF att 97.1 0.042 9.1E-07 54.5 18.6 26 404-429 158-183 (282)
191 PF12688 TPR_5: Tetratrico pep 97.1 0.0054 1.2E-07 51.1 10.1 88 478-565 7-102 (120)
192 PRK10866 outer membrane biogen 97.1 0.032 7E-07 53.6 16.9 174 373-565 35-239 (243)
193 PF04840 Vps16_C: Vps16, C-ter 97.1 0.25 5.4E-06 49.4 23.4 111 437-564 178-288 (319)
194 PRK10803 tol-pal system protei 97.1 0.0038 8.3E-08 60.4 10.2 93 475-567 146-246 (263)
195 PF05843 Suf: Suppressor of fo 97.1 0.0058 1.3E-07 60.3 11.7 129 437-567 2-136 (280)
196 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.002 4.4E-08 65.3 8.4 63 504-566 75-140 (453)
197 KOG0550 Molecular chaperone (D 97.1 0.041 9E-07 54.6 16.8 88 448-535 261-352 (486)
198 PF13428 TPR_14: Tetratricopep 97.0 0.0012 2.6E-08 44.0 4.5 42 505-546 2-43 (44)
199 PF12688 TPR_5: Tetratrico pep 97.0 0.021 4.4E-07 47.7 12.1 92 406-497 6-100 (120)
200 PF13371 TPR_9: Tetratricopept 97.0 0.0031 6.6E-08 47.7 6.7 64 480-543 3-68 (73)
201 KOG1130 Predicted G-alpha GTPa 96.9 0.019 4.2E-07 56.6 13.1 153 403-555 197-372 (639)
202 PRK10803 tol-pal system protei 96.9 0.017 3.7E-07 55.9 12.9 93 447-539 154-252 (263)
203 KOG0543 FKBP-type peptidyl-pro 96.9 0.0084 1.8E-07 59.5 10.4 89 480-568 216-321 (397)
204 PF10037 MRP-S27: Mitochondria 96.8 0.017 3.6E-07 59.4 12.8 116 369-485 65-186 (429)
205 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.7 1.5E-05 46.7 28.3 408 151-567 30-531 (660)
206 KOG2796 Uncharacterized conser 96.8 0.19 4.1E-06 46.9 17.8 229 300-536 70-318 (366)
207 PF10037 MRP-S27: Mitochondria 96.8 0.012 2.5E-07 60.6 11.1 117 60-178 64-186 (429)
208 KOG1538 Uncharacterized conser 96.8 0.06 1.3E-06 56.3 16.0 229 230-503 553-805 (1081)
209 KOG2041 WD40 repeat protein [G 96.7 1.1 2.3E-05 48.0 27.3 205 162-402 689-910 (1189)
210 PF08579 RPM2: Mitochondrial r 96.7 0.028 6E-07 45.2 10.3 80 404-484 28-116 (120)
211 PF13424 TPR_12: Tetratricopep 96.6 0.002 4.4E-08 49.5 3.4 63 504-566 5-74 (78)
212 PRK11906 transcriptional regul 96.5 0.22 4.7E-06 51.2 17.9 159 402-563 252-432 (458)
213 PF06239 ECSIT: Evolutionarily 96.5 0.028 6E-07 51.2 10.3 97 390-487 34-153 (228)
214 KOG2796 Uncharacterized conser 96.5 0.22 4.8E-06 46.5 16.0 169 271-441 139-324 (366)
215 PRK10866 outer membrane biogen 96.5 0.64 1.4E-05 44.7 20.2 62 304-367 37-102 (243)
216 PF13281 DUF4071: Domain of un 96.5 0.3 6.4E-06 49.4 18.2 160 375-537 146-338 (374)
217 KOG1258 mRNA processing protei 96.4 1.6 3.4E-05 46.2 31.0 182 369-553 296-490 (577)
218 PF09205 DUF1955: Domain of un 96.4 0.14 3.1E-06 42.3 12.6 140 412-570 13-152 (161)
219 COG3898 Uncharacterized membra 96.4 1.2 2.7E-05 44.2 26.7 273 210-497 98-388 (531)
220 PF13525 YfiO: Outer membrane 96.3 0.35 7.5E-06 45.2 17.2 50 510-559 147-199 (203)
221 PF04184 ST7: ST7 protein; In 96.3 0.089 1.9E-06 53.9 13.6 195 413-621 180-383 (539)
222 PF06239 ECSIT: Evolutionarily 96.3 0.018 3.8E-07 52.4 7.9 67 114-180 71-153 (228)
223 KOG1538 Uncharacterized conser 96.2 0.89 1.9E-05 48.1 20.4 200 133-399 601-802 (1081)
224 PF07079 DUF1347: Protein of u 96.2 1.7 3.8E-05 44.2 34.5 65 466-530 450-521 (549)
225 PF13424 TPR_12: Tetratricopep 96.2 0.0095 2.1E-07 45.7 4.9 60 474-533 7-75 (78)
226 COG0457 NrfG FOG: TPR repeat [ 96.1 1.3 2.8E-05 41.9 27.0 198 370-569 59-267 (291)
227 PF13525 YfiO: Outer membrane 96.1 0.62 1.3E-05 43.5 17.7 143 403-567 7-170 (203)
228 KOG4555 TPR repeat-containing 96.1 0.037 7.9E-07 45.5 7.8 90 480-569 51-146 (175)
229 COG4235 Cytochrome c biogenesi 96.1 0.098 2.1E-06 50.3 11.8 30 400-429 155-184 (287)
230 PF03704 BTAD: Bacterial trans 96.0 0.028 6.1E-07 49.4 7.7 62 505-566 63-124 (146)
231 COG1729 Uncharacterized protei 95.8 0.1 2.2E-06 49.5 10.8 91 449-539 154-250 (262)
232 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.068 1.5E-06 54.6 9.7 96 471-569 74-176 (453)
233 KOG1585 Protein required for f 95.7 0.98 2.1E-05 41.9 15.8 87 474-561 152-250 (308)
234 KOG0543 FKBP-type peptidyl-pro 95.6 0.38 8.2E-06 48.2 14.2 138 408-567 215-355 (397)
235 PF13512 TPR_18: Tetratricopep 95.6 0.26 5.6E-06 42.0 11.4 87 481-567 19-128 (142)
236 COG3118 Thioredoxin domain-con 95.5 1.4 3.1E-05 42.4 17.1 145 409-556 142-290 (304)
237 COG1729 Uncharacterized protei 95.5 0.091 2E-06 49.8 9.3 93 474-569 144-246 (262)
238 PF12921 ATP13: Mitochondrial 95.5 0.22 4.8E-06 42.0 10.5 50 432-481 48-97 (126)
239 PF13512 TPR_18: Tetratricopep 95.3 0.6 1.3E-05 39.9 12.7 19 520-538 115-133 (142)
240 COG4105 ComL DNA uptake lipopr 95.3 2.1 4.5E-05 40.5 17.0 59 509-567 172-233 (254)
241 PRK11906 transcriptional regul 95.2 0.36 7.7E-06 49.6 13.0 119 451-569 273-403 (458)
242 KOG2066 Vacuolar assembly/sort 95.2 6.1 0.00013 43.2 25.7 101 138-245 364-467 (846)
243 COG0457 NrfG FOG: TPR repeat [ 95.1 3 6.6E-05 39.2 24.8 164 369-536 94-268 (291)
244 KOG2280 Vacuolar assembly/sort 95.1 6.4 0.00014 42.9 30.6 330 198-563 439-795 (829)
245 KOG1941 Acetylcholine receptor 95.1 1.1 2.4E-05 44.0 15.0 122 340-461 128-271 (518)
246 KOG2610 Uncharacterized conser 95.0 0.61 1.3E-05 45.2 13.1 148 415-565 117-274 (491)
247 COG3118 Thioredoxin domain-con 94.9 1.3 2.8E-05 42.6 14.8 122 445-569 143-267 (304)
248 PF00515 TPR_1: Tetratricopept 94.8 0.052 1.1E-06 33.5 3.8 32 505-536 2-33 (34)
249 KOG1941 Acetylcholine receptor 94.7 0.69 1.5E-05 45.4 12.7 45 309-353 16-62 (518)
250 KOG3941 Intermediate in Toll s 94.7 0.29 6.3E-06 46.2 9.8 101 388-489 52-175 (406)
251 PF07719 TPR_2: Tetratricopept 94.7 0.078 1.7E-06 32.6 4.5 33 505-537 2-34 (34)
252 PF12921 ATP13: Mitochondrial 94.7 0.33 7.2E-06 40.9 9.6 48 467-514 47-98 (126)
253 KOG4234 TPR repeat-containing 94.6 0.22 4.7E-06 44.6 8.2 90 480-569 103-199 (271)
254 KOG2610 Uncharacterized conser 94.4 0.53 1.2E-05 45.6 11.0 116 448-565 115-236 (491)
255 COG4785 NlpI Lipoprotein NlpI, 94.4 2.3 5E-05 38.8 14.2 163 400-569 98-268 (297)
256 KOG1920 IkappaB kinase complex 94.3 6.3 0.00014 45.4 20.4 126 384-530 894-1025(1265)
257 smart00299 CLH Clathrin heavy 94.3 3.2 6.8E-05 36.0 15.3 86 133-222 10-95 (140)
258 PF08631 SPO22: Meiosis protei 94.3 6.1 0.00013 39.0 22.6 20 512-531 254-273 (278)
259 KOG2114 Vacuolar assembly/sort 94.2 11 0.00024 41.8 28.8 75 478-553 711-786 (933)
260 PF04184 ST7: ST7 protein; In 94.2 3.7 8E-05 42.6 17.1 16 523-538 365-380 (539)
261 PF03704 BTAD: Bacterial trans 94.2 0.49 1.1E-05 41.5 10.1 68 405-474 66-138 (146)
262 COG5107 RNA14 Pre-mRNA 3'-end 94.2 7.5 0.00016 39.7 32.2 446 48-537 30-535 (660)
263 PF04053 Coatomer_WDAD: Coatom 94.1 1.3 2.8E-05 46.7 14.3 158 103-293 269-427 (443)
264 KOG3941 Intermediate in Toll s 94.1 0.24 5.2E-06 46.7 7.8 99 82-180 52-173 (406)
265 KOG0890 Protein kinase of the 94.0 22 0.00048 44.5 32.5 282 270-569 1422-1733(2382)
266 PF13281 DUF4071: Domain of un 94.0 5.2 0.00011 40.7 17.6 71 273-343 146-226 (374)
267 PF10300 DUF3808: Protein of u 93.9 3.2 6.9E-05 44.4 17.2 158 407-567 194-376 (468)
268 smart00299 CLH Clathrin heavy 93.8 3.1 6.7E-05 36.0 14.2 26 486-514 110-135 (140)
269 PRK11619 lytic murein transgly 93.5 15 0.00034 40.9 32.0 116 414-532 254-374 (644)
270 KOG4555 TPR repeat-containing 93.4 0.7 1.5E-05 38.3 8.5 53 410-464 52-105 (175)
271 KOG1258 mRNA processing protei 93.4 13 0.00027 39.7 25.4 126 168-296 48-179 (577)
272 COG4105 ComL DNA uptake lipopr 93.3 6.7 0.00014 37.2 16.0 50 279-328 45-100 (254)
273 PRK15331 chaperone protein Sic 93.3 1.9 4E-05 37.9 11.5 84 411-498 47-131 (165)
274 PF04053 Coatomer_WDAD: Coatom 93.2 1.4 2.9E-05 46.5 12.6 134 410-569 270-404 (443)
275 PF02259 FAT: FAT domain; Int 92.9 12 0.00025 38.5 19.4 149 400-550 145-304 (352)
276 PF13176 TPR_7: Tetratricopept 92.5 0.2 4.4E-06 31.4 3.5 26 540-565 1-26 (36)
277 PRK09687 putative lyase; Provi 92.3 12 0.00027 36.8 26.4 74 369-447 205-278 (280)
278 KOG4648 Uncharacterized conser 92.0 0.29 6.4E-06 47.4 5.4 109 442-557 103-214 (536)
279 PRK09687 putative lyase; Provi 92.0 13 0.00029 36.5 26.0 180 266-451 35-221 (280)
280 PF10300 DUF3808: Protein of u 91.8 9.3 0.0002 40.9 17.1 79 349-429 248-333 (468)
281 KOG1920 IkappaB kinase complex 91.8 30 0.00066 40.2 23.2 84 306-401 972-1057(1265)
282 PF13181 TPR_8: Tetratricopept 91.7 0.3 6.4E-06 30.0 3.6 32 505-536 2-33 (34)
283 PF13176 TPR_7: Tetratricopept 91.5 0.31 6.8E-06 30.5 3.5 28 506-533 1-28 (36)
284 COG3947 Response regulator con 90.9 16 0.00035 35.3 15.8 59 508-566 283-341 (361)
285 PF13428 TPR_14: Tetratricopep 90.9 0.78 1.7E-05 30.3 5.1 33 403-437 3-35 (44)
286 PF00637 Clathrin: Region in C 90.0 0.063 1.4E-06 47.0 -1.0 85 135-222 12-96 (143)
287 PF09613 HrpB1_HrpK: Bacterial 90.0 1.2 2.7E-05 38.8 6.9 52 516-567 22-73 (160)
288 KOG4570 Uncharacterized conser 89.7 2.5 5.5E-05 40.8 9.1 102 55-160 57-165 (418)
289 PF13170 DUF4003: Protein of u 89.6 11 0.00023 37.5 14.1 136 315-480 78-225 (297)
290 PF00515 TPR_1: Tetratricopept 89.5 0.93 2E-05 27.7 4.4 32 402-435 2-33 (34)
291 COG3629 DnrI DNA-binding trans 89.2 1.6 3.5E-05 42.2 7.8 63 504-566 153-215 (280)
292 PF13170 DUF4003: Protein of u 89.2 3.6 7.8E-05 40.7 10.4 144 26-171 56-223 (297)
293 COG4785 NlpI Lipoprotein NlpI, 89.1 1.5 3.4E-05 39.9 6.9 66 499-564 93-159 (297)
294 PF09613 HrpB1_HrpK: Bacterial 89.1 15 0.00033 32.2 13.5 86 447-535 21-108 (160)
295 TIGR02561 HrpB1_HrpK type III 89.0 2 4.3E-05 36.9 7.2 54 516-569 22-75 (153)
296 PF09205 DUF1955: Domain of un 88.8 13 0.00029 31.2 12.8 59 405-464 90-148 (161)
297 KOG0890 Protein kinase of the 88.7 78 0.0017 40.1 28.9 158 137-305 1390-1552(2382)
298 KOG2114 Vacuolar assembly/sort 88.6 46 0.001 37.2 20.9 174 272-462 338-516 (933)
299 PF10602 RPN7: 26S proteasome 88.4 6.6 0.00014 35.6 10.8 94 403-498 38-139 (177)
300 KOG1464 COP9 signalosome, subu 88.3 24 0.00051 33.6 16.8 229 283-517 42-317 (440)
301 PF06552 TOM20_plant: Plant sp 88.0 5.1 0.00011 35.7 9.3 65 499-570 63-139 (186)
302 PF14853 Fis1_TPR_C: Fis1 C-te 87.9 3.4 7.4E-05 28.5 6.6 51 540-616 3-53 (53)
303 PF02259 FAT: FAT domain; Int 87.9 22 0.00047 36.4 16.0 67 503-569 145-215 (352)
304 PF04097 Nic96: Nup93/Nic96; 87.8 51 0.0011 36.8 22.2 27 538-564 500-531 (613)
305 COG2976 Uncharacterized protei 87.3 23 0.00049 32.2 14.1 113 419-536 70-191 (207)
306 PF07035 Mic1: Colon cancer-as 86.9 21 0.00045 31.8 12.6 133 115-261 14-148 (167)
307 COG3629 DnrI DNA-binding trans 86.8 3.9 8.6E-05 39.6 8.7 76 268-343 153-236 (280)
308 PF13431 TPR_17: Tetratricopep 86.7 1.1 2.3E-05 27.7 3.3 30 359-390 4-33 (34)
309 PRK10941 hypothetical protein; 86.4 5 0.00011 39.0 9.3 64 506-569 183-246 (269)
310 PF07719 TPR_2: Tetratricopept 86.1 1.8 4E-05 26.2 4.3 31 403-435 3-33 (34)
311 KOG4648 Uncharacterized conser 86.0 2.9 6.3E-05 40.9 7.3 93 407-503 103-197 (536)
312 PF13374 TPR_10: Tetratricopep 85.7 1.7 3.6E-05 28.0 4.1 27 506-532 4-30 (42)
313 PF07721 TPR_4: Tetratricopept 85.6 1 2.2E-05 25.7 2.6 24 539-562 2-25 (26)
314 PF10602 RPN7: 26S proteasome 85.2 10 0.00022 34.4 10.2 95 370-464 36-141 (177)
315 KOG1586 Protein required for f 85.0 34 0.00073 32.1 13.7 62 477-538 118-188 (288)
316 KOG1585 Protein required for f 84.7 23 0.0005 33.3 12.0 57 507-563 153-215 (308)
317 PF13174 TPR_6: Tetratricopept 84.4 2 4.3E-05 25.8 3.8 25 511-535 7-31 (33)
318 KOG3364 Membrane protein invol 84.2 11 0.00024 31.8 8.8 63 504-566 32-99 (149)
319 PF00637 Clathrin: Region in C 83.5 0.17 3.8E-06 44.1 -1.9 84 101-191 13-96 (143)
320 PF14853 Fis1_TPR_C: Fis1 C-te 83.2 2.3 4.9E-05 29.4 3.9 32 509-540 6-37 (53)
321 PF13374 TPR_10: Tetratricopep 83.2 1.9 4.1E-05 27.7 3.5 28 539-566 3-30 (42)
322 KOG4234 TPR repeat-containing 83.0 15 0.00034 33.3 9.8 61 478-538 140-202 (271)
323 smart00028 TPR Tetratricopepti 82.4 2.5 5.4E-05 24.6 3.7 29 507-535 4-32 (34)
324 PF13174 TPR_6: Tetratricopept 82.4 1.4 3.1E-05 26.5 2.5 29 540-568 2-30 (33)
325 TIGR02561 HrpB1_HrpK type III 82.2 14 0.0003 31.9 8.9 85 446-533 20-106 (153)
326 KOG4279 Serine/threonine prote 81.9 24 0.00053 38.6 12.5 183 301-537 203-399 (1226)
327 PF13181 TPR_8: Tetratricopept 81.8 2.7 5.8E-05 25.6 3.6 28 539-566 2-29 (34)
328 TIGR02508 type_III_yscG type I 80.9 26 0.00057 27.8 9.3 85 250-338 22-106 (115)
329 PF04097 Nic96: Nup93/Nic96; 80.4 1E+02 0.0022 34.4 24.2 49 94-144 111-159 (613)
330 PRK15180 Vi polysaccharide bio 80.4 17 0.00037 37.5 10.4 120 413-536 301-423 (831)
331 PF06552 TOM20_plant: Plant sp 80.0 5.7 0.00012 35.4 6.1 34 520-553 51-84 (186)
332 KOG1550 Extracellular protein 79.9 1E+02 0.0022 34.0 23.8 79 487-568 454-539 (552)
333 PRK12798 chemotaxis protein; R 79.8 79 0.0017 32.6 22.0 181 383-566 125-323 (421)
334 COG4649 Uncharacterized protei 79.7 44 0.00096 29.7 16.2 121 411-532 68-195 (221)
335 KOG0376 Serine-threonine phosp 79.5 3.4 7.5E-05 42.6 5.3 86 481-566 13-100 (476)
336 KOG4570 Uncharacterized conser 78.8 17 0.00037 35.4 9.3 99 263-365 59-166 (418)
337 KOG1308 Hsp70-interacting prot 78.3 1.4 3.1E-05 43.2 2.1 85 485-569 127-213 (377)
338 PF02284 COX5A: Cytochrome c o 78.0 17 0.00036 29.0 7.4 60 419-480 28-87 (108)
339 KOG0276 Vesicle coat complex C 77.9 27 0.00059 37.3 11.1 163 195-396 580-747 (794)
340 cd00923 Cyt_c_Oxidase_Va Cytoc 77.7 17 0.00038 28.6 7.4 62 416-479 22-83 (103)
341 COG2976 Uncharacterized protei 77.4 35 0.00076 31.0 10.3 89 241-329 97-189 (207)
342 COG4649 Uncharacterized protei 76.8 55 0.0012 29.2 13.9 52 413-464 144-195 (221)
343 KOG4642 Chaperone-dependent E3 76.7 7.7 0.00017 36.2 6.2 82 485-566 23-106 (284)
344 PF08631 SPO22: Meiosis protei 76.5 82 0.0018 31.0 25.3 160 403-565 86-273 (278)
345 KOG0545 Aryl-hydrocarbon recep 76.3 19 0.0004 33.9 8.5 91 479-569 185-295 (329)
346 PF09986 DUF2225: Uncharacteri 76.1 11 0.00025 35.2 7.5 66 504-569 118-196 (214)
347 PF10345 Cohesin_load: Cohesin 76.1 1.4E+02 0.003 33.5 32.2 49 517-565 547-604 (608)
348 COG1747 Uncharacterized N-term 76.0 1.1E+02 0.0024 32.3 22.6 162 371-539 67-240 (711)
349 PF11207 DUF2989: Protein of u 76.0 15 0.00032 33.6 7.7 68 489-557 123-197 (203)
350 KOG0276 Vesicle coat complex C 75.9 26 0.00056 37.5 10.4 162 94-293 580-746 (794)
351 KOG1464 COP9 signalosome, subu 75.9 57 0.0012 31.1 11.6 179 383-561 40-254 (440)
352 KOG1586 Protein required for f 75.7 72 0.0016 30.0 15.4 55 483-537 165-228 (288)
353 PF14561 TPR_20: Tetratricopep 74.6 7.1 0.00015 30.7 4.8 46 524-569 8-53 (90)
354 PF07721 TPR_4: Tetratricopept 73.7 6.7 0.00015 22.2 3.4 22 271-292 4-25 (26)
355 PRK13800 putative oxidoreducta 73.6 2E+02 0.0043 34.1 25.0 255 289-566 625-880 (897)
356 KOG1550 Extracellular protein 73.1 1.5E+02 0.0033 32.6 16.5 51 518-570 378-429 (552)
357 cd00923 Cyt_c_Oxidase_Va Cytoc 72.7 21 0.00045 28.2 6.7 60 316-377 24-83 (103)
358 PF04910 Tcf25: Transcriptiona 72.1 1.2E+02 0.0027 31.1 14.8 64 503-566 99-167 (360)
359 PRK15180 Vi polysaccharide bio 71.2 24 0.00052 36.5 8.6 130 381-513 300-434 (831)
360 COG1747 Uncharacterized N-term 71.0 1.5E+02 0.0032 31.5 24.5 159 298-464 65-233 (711)
361 COG4455 ImpE Protein of avirul 70.3 16 0.00034 33.8 6.4 64 475-538 4-69 (273)
362 PF11207 DUF2989: Protein of u 70.0 44 0.00095 30.7 9.3 21 471-491 177-197 (203)
363 PF02284 COX5A: Cytochrome c o 68.8 27 0.00058 27.9 6.6 60 317-378 28-87 (108)
364 KOG2396 HAT (Half-A-TPR) repea 68.3 1.7E+02 0.0036 31.1 19.7 96 433-531 456-557 (568)
365 PF13929 mRNA_stabil: mRNA sta 67.8 82 0.0018 30.8 11.1 68 457-524 187-258 (292)
366 PF13929 mRNA_stabil: mRNA sta 67.3 1.3E+02 0.0028 29.5 12.4 112 110-221 143-263 (292)
367 TIGR03504 FimV_Cterm FimV C-te 67.1 9.3 0.0002 25.2 3.3 27 542-568 3-29 (44)
368 smart00028 TPR Tetratricopepti 67.1 8.4 0.00018 22.1 3.2 29 539-567 2-30 (34)
369 PF09477 Type_III_YscG: Bacter 66.9 67 0.0015 26.0 9.8 86 248-337 21-106 (116)
370 smart00386 HAT HAT (Half-A-TPR 66.7 12 0.00025 22.1 3.7 30 518-547 1-30 (33)
371 KOG0551 Hsp90 co-chaperone CNS 66.5 31 0.00067 34.1 8.0 91 474-564 83-179 (390)
372 KOG0403 Neoplastic transformat 66.1 1.7E+02 0.0037 30.4 19.2 59 373-431 512-573 (645)
373 PF07035 Mic1: Colon cancer-as 66.0 99 0.0021 27.6 15.4 31 256-286 17-47 (167)
374 KOG1498 26S proteasome regulat 65.9 1.6E+02 0.0035 30.0 15.5 100 477-580 136-254 (439)
375 TIGR02508 type_III_yscG type I 65.8 68 0.0015 25.6 9.0 59 378-439 47-105 (115)
376 KOG2396 HAT (Half-A-TPR) repea 63.3 2.1E+02 0.0045 30.4 33.1 239 319-566 302-558 (568)
377 KOG2066 Vacuolar assembly/sort 62.9 2.6E+02 0.0057 31.4 30.1 170 102-299 363-536 (846)
378 PF14561 TPR_20: Tetratricopep 62.3 70 0.0015 25.1 8.1 61 504-564 22-85 (90)
379 COG4976 Predicted methyltransf 62.3 14 0.00031 34.2 4.7 56 482-537 5-62 (287)
380 PF11768 DUF3312: Protein of u 61.8 1.3E+02 0.0027 32.4 12.0 128 373-524 411-543 (545)
381 PF14863 Alkyl_sulf_dimr: Alky 61.1 35 0.00076 29.4 6.7 66 488-556 57-122 (141)
382 KOG3824 Huntingtin interacting 61.0 33 0.00071 33.4 7.0 60 483-542 127-188 (472)
383 TIGR03504 FimV_Cterm FimV C-te 60.5 19 0.00042 23.7 3.9 24 407-430 5-28 (44)
384 PRK13800 putative oxidoreducta 60.5 3.5E+02 0.0075 32.1 26.2 255 185-464 624-880 (897)
385 PF09670 Cas_Cas02710: CRISPR- 59.9 1.5E+02 0.0033 30.8 12.4 53 411-464 141-197 (379)
386 PF10579 Rapsyn_N: Rapsyn N-te 58.8 25 0.00055 26.5 4.7 19 475-493 46-64 (80)
387 PF04910 Tcf25: Transcriptiona 58.8 2.2E+02 0.0048 29.3 17.9 90 443-535 110-224 (360)
388 PF10579 Rapsyn_N: Rapsyn N-te 58.5 29 0.00064 26.2 4.9 47 413-459 18-66 (80)
389 cd08819 CARD_MDA5_2 Caspase ac 58.3 64 0.0014 25.0 6.8 39 382-421 48-86 (88)
390 PF07163 Pex26: Pex26 protein; 58.1 51 0.0011 31.8 7.7 87 203-291 90-181 (309)
391 KOG2063 Vacuolar assembly/sort 58.1 3.5E+02 0.0077 31.4 18.5 27 301-327 506-532 (877)
392 PF10366 Vps39_1: Vacuolar sor 58.0 86 0.0019 25.6 8.2 28 300-327 40-67 (108)
393 COG4455 ImpE Protein of avirul 57.9 57 0.0012 30.3 7.6 57 404-462 4-61 (273)
394 KOG4507 Uncharacterized conser 56.6 38 0.00083 36.1 7.2 99 448-549 619-721 (886)
395 PRK10941 hypothetical protein; 56.6 78 0.0017 30.9 9.1 65 477-541 186-252 (269)
396 PF10366 Vps39_1: Vacuolar sor 55.2 1E+02 0.0022 25.2 8.2 27 403-429 41-67 (108)
397 KOG4642 Chaperone-dependent E3 54.9 1.5E+02 0.0033 28.1 9.8 116 380-497 20-142 (284)
398 PF12862 Apc5: Anaphase-promot 54.8 31 0.00067 27.3 5.1 53 514-566 8-69 (94)
399 PF07720 TPR_3: Tetratricopept 54.5 39 0.00085 21.1 4.4 29 507-535 4-34 (36)
400 PF07163 Pex26: Pex26 protein; 54.5 1.5E+02 0.0032 28.9 10.0 87 408-497 90-183 (309)
401 COG4976 Predicted methyltransf 54.5 17 0.00037 33.8 3.8 56 514-569 5-60 (287)
402 PF06957 COPI_C: Coatomer (COP 54.0 56 0.0012 34.0 7.9 41 497-537 291-333 (422)
403 KOG3807 Predicted membrane pro 53.9 2.1E+02 0.0045 28.5 11.1 61 478-538 281-346 (556)
404 PF11846 DUF3366: Domain of un 53.9 45 0.00098 30.7 6.8 37 499-535 139-175 (193)
405 KOG3824 Huntingtin interacting 51.1 34 0.00074 33.3 5.4 52 514-565 126-177 (472)
406 PF08424 NRDE-2: NRDE-2, neces 50.8 2.8E+02 0.0061 28.0 14.1 77 490-566 49-130 (321)
407 PF04190 DUF410: Protein of un 49.7 2.6E+02 0.0055 27.2 13.8 89 105-193 20-118 (260)
408 PF10345 Cohesin_load: Cohesin 48.9 4.3E+02 0.0093 29.6 24.7 48 515-562 372-428 (608)
409 KOG4507 Uncharacterized conser 48.8 60 0.0013 34.7 7.1 134 433-569 568-707 (886)
410 PF13762 MNE1: Mitochondrial s 48.2 97 0.0021 26.9 7.2 88 54-143 29-128 (145)
411 PF11846 DUF3366: Domain of un 47.8 72 0.0016 29.3 7.2 31 468-498 140-170 (193)
412 COG2909 MalT ATP-dependent tra 47.3 5E+02 0.011 29.9 25.0 22 477-498 623-644 (894)
413 KOG1308 Hsp70-interacting prot 47.3 21 0.00045 35.4 3.5 117 448-567 126-244 (377)
414 PF07575 Nucleopor_Nup85: Nup8 47.1 4.4E+02 0.0095 29.2 20.0 124 435-578 404-533 (566)
415 KOG3807 Predicted membrane pro 46.7 2.4E+02 0.0053 28.0 10.3 52 407-460 281-335 (556)
416 PF09477 Type_III_YscG: Bacter 46.7 1.6E+02 0.0034 24.0 8.4 78 350-431 22-99 (116)
417 PF12862 Apc5: Anaphase-promot 46.6 70 0.0015 25.2 6.0 29 506-534 43-71 (94)
418 KOG3364 Membrane protein invol 45.5 1.3E+02 0.0029 25.6 7.3 63 477-539 37-106 (149)
419 PF08311 Mad3_BUB1_I: Mad3/BUB 45.2 1.3E+02 0.0028 25.4 7.6 42 522-563 81-124 (126)
420 PRK11619 lytic murein transgly 45.0 5E+02 0.011 29.3 37.7 244 312-569 254-507 (644)
421 PRK09169 hypothetical protein; 44.7 8.4E+02 0.018 31.8 42.3 469 95-564 122-692 (2316)
422 cd08819 CARD_MDA5_2 Caspase ac 42.8 1.4E+02 0.0031 23.1 6.6 66 149-216 21-86 (88)
423 KOG4077 Cytochrome c oxidase, 42.1 1.7E+02 0.0036 24.6 7.2 71 419-500 67-137 (149)
424 PF11663 Toxin_YhaV: Toxin wit 42.0 35 0.00076 28.8 3.5 33 106-140 106-138 (140)
425 smart00777 Mad3_BUB1_I Mad3/BU 41.8 98 0.0021 26.1 6.2 53 504-562 69-123 (125)
426 KOG0687 26S proteasome regulat 41.2 3.8E+02 0.0082 26.8 12.5 10 641-650 321-330 (393)
427 PRK10564 maltose regulon perip 40.9 51 0.0011 32.3 5.0 41 403-443 259-299 (303)
428 PF08225 Antimicrobial19: Pseu 40.3 19 0.0004 19.0 1.1 12 668-679 10-21 (23)
429 PF11838 ERAP1_C: ERAP1-like C 40.2 3.9E+02 0.0086 26.7 17.8 97 451-547 145-245 (324)
430 PF12968 DUF3856: Domain of Un 39.1 2.3E+02 0.005 23.6 10.4 62 503-564 54-126 (144)
431 KOG2422 Uncharacterized conser 39.0 5.5E+02 0.012 28.0 12.3 123 446-568 248-408 (665)
432 PF08311 Mad3_BUB1_I: Mad3/BUB 38.5 2.4E+02 0.0052 23.7 8.9 44 352-395 81-124 (126)
433 COG4941 Predicted RNA polymera 38.4 4.3E+02 0.0093 26.6 11.9 127 399-538 262-399 (415)
434 KOG2062 26S proteasome regulat 38.0 6.4E+02 0.014 28.5 22.5 118 411-532 511-634 (929)
435 COG0790 FOG: TPR repeat, SEL1 37.6 4.1E+02 0.0089 26.1 16.3 50 283-332 92-146 (292)
436 COG2912 Uncharacterized conser 37.1 2.4E+02 0.0051 27.4 8.7 61 508-568 185-245 (269)
437 PHA02875 ankyrin repeat protei 36.9 5.1E+02 0.011 27.1 16.8 20 172-191 72-91 (413)
438 KOG4814 Uncharacterized conser 36.9 3.5E+02 0.0075 29.8 10.5 85 483-567 365-457 (872)
439 PRK10564 maltose regulon perip 36.3 58 0.0013 32.0 4.6 39 301-339 259-297 (303)
440 TIGR02270 conserved hypothetic 36.1 5.4E+02 0.012 27.1 24.6 172 101-292 44-215 (410)
441 KOG2471 TPR repeat-containing 35.9 5.7E+02 0.012 27.3 13.1 103 377-482 247-379 (696)
442 KOG0292 Vesicle coat complex C 35.5 58 0.0013 36.7 4.9 95 414-532 606-700 (1202)
443 PHA02875 ankyrin repeat protei 35.2 5.4E+02 0.012 26.9 14.2 115 173-294 40-158 (413)
444 PF14689 SPOB_a: Sensor_kinase 34.8 78 0.0017 22.7 4.0 21 442-462 29-49 (62)
445 PF11848 DUF3368: Domain of un 34.7 1.4E+02 0.0031 20.0 5.2 33 412-444 13-45 (48)
446 PF11817 Foie-gras_1: Foie gra 34.1 1.4E+02 0.003 28.8 7.0 11 414-424 191-201 (247)
447 PF04090 RNA_pol_I_TF: RNA pol 34.1 3.8E+02 0.0083 24.7 10.1 131 401-548 41-188 (199)
448 KOG0376 Serine-threonine phosp 33.8 87 0.0019 32.8 5.6 48 414-463 17-65 (476)
449 PF04034 DUF367: Domain of unk 33.7 2.9E+02 0.0063 23.3 7.5 59 471-529 65-124 (127)
450 PRK13342 recombination factor 33.7 5.9E+02 0.013 26.8 13.5 165 112-293 154-330 (413)
451 COG5191 Uncharacterized conser 33.6 96 0.0021 30.5 5.5 77 469-545 104-183 (435)
452 PHA02537 M terminase endonucle 33.3 4.3E+02 0.0093 25.1 10.0 25 412-436 94-119 (230)
453 PF14689 SPOB_a: Sensor_kinase 33.0 69 0.0015 23.0 3.5 30 400-429 22-51 (62)
454 PF11663 Toxin_YhaV: Toxin wit 32.9 48 0.0011 28.0 3.0 34 411-446 105-138 (140)
455 KOG0403 Neoplastic transformat 32.0 6.2E+02 0.014 26.6 20.0 58 476-533 513-572 (645)
456 KOG4077 Cytochrome c oxidase, 31.5 2.3E+02 0.005 23.9 6.5 48 318-365 68-115 (149)
457 PF11848 DUF3368: Domain of un 31.5 1.4E+02 0.0031 20.0 4.6 31 142-172 14-44 (48)
458 COG3947 Response regulator con 30.6 5.4E+02 0.012 25.4 15.2 54 477-530 284-339 (361)
459 KOG1524 WD40 repeat-containing 30.6 2.2E+02 0.0048 30.3 7.7 89 471-562 572-668 (737)
460 PF15469 Sec5: Exocyst complex 30.3 4.1E+02 0.009 24.0 11.6 23 442-464 92-114 (182)
461 PF07575 Nucleopor_Nup85: Nup8 30.2 1.9E+02 0.0042 31.9 8.2 62 232-295 404-465 (566)
462 PF04190 DUF410: Protein of un 30.1 5.2E+02 0.011 25.1 20.0 82 369-465 89-170 (260)
463 KOG0991 Replication factor C, 29.6 5E+02 0.011 24.7 12.4 139 274-437 136-274 (333)
464 PF10475 DUF2450: Protein of u 29.4 3.9E+02 0.0084 26.5 9.4 51 275-327 105-155 (291)
465 cd08326 CARD_CASP9 Caspase act 29.3 2.7E+02 0.0058 21.5 6.7 61 355-420 20-80 (84)
466 cd00280 TRFH Telomeric Repeat 29.2 3.2E+02 0.007 24.8 7.5 25 480-504 119-143 (200)
467 cd00280 TRFH Telomeric Repeat 28.7 1.8E+02 0.0039 26.4 5.9 31 509-540 116-146 (200)
468 COG2178 Predicted RNA-binding 28.1 4.7E+02 0.01 24.0 9.1 52 379-430 38-98 (204)
469 COG0790 FOG: TPR repeat, SEL1 27.8 5.9E+02 0.013 25.0 19.6 78 489-569 172-268 (292)
470 KOG1811 Predicted Zn2+-binding 27.4 4.5E+02 0.0097 28.6 9.4 91 474-565 558-651 (1141)
471 PF02184 HAT: HAT (Half-A-TPR) 27.3 1.4E+02 0.0031 18.1 3.5 22 417-440 3-24 (32)
472 PF15161 Neuropep_like: Neurop 27.2 37 0.0008 23.3 1.1 17 662-679 11-27 (65)
473 KOG0292 Vesicle coat complex C 27.0 9.6E+02 0.021 27.8 12.1 131 378-532 651-781 (1202)
474 PF10255 Paf67: RNA polymerase 26.8 5.1E+02 0.011 27.1 9.7 61 403-463 124-191 (404)
475 COG5159 RPN6 26S proteasome re 26.6 6.2E+02 0.013 24.8 14.9 137 407-566 9-153 (421)
476 COG0735 Fur Fe2+/Zn2+ uptake r 26.5 2.9E+02 0.0063 24.0 7.0 29 407-435 26-54 (145)
477 KOG2300 Uncharacterized conser 25.6 8.4E+02 0.018 26.0 20.7 117 284-401 298-435 (629)
478 PRK11639 zinc uptake transcrip 25.4 2.6E+02 0.0056 25.0 6.7 60 428-489 18-77 (169)
479 PF04090 RNA_pol_I_TF: RNA pol 25.3 3.8E+02 0.0081 24.8 7.6 62 505-566 42-104 (199)
480 KOG4567 GTPase-activating prot 25.1 6.9E+02 0.015 24.9 10.3 73 421-499 263-345 (370)
481 PF14669 Asp_Glu_race_2: Putat 24.8 5.5E+02 0.012 23.6 13.6 56 237-292 136-205 (233)
482 PRK11639 zinc uptake transcrip 24.5 2.9E+02 0.0063 24.7 6.8 35 146-180 41-75 (169)
483 COG4941 Predicted RNA polymera 24.1 7.6E+02 0.016 25.0 9.8 115 386-503 272-397 (415)
484 KOG2034 Vacuolar sorting prote 24.1 1.2E+03 0.025 27.1 26.0 133 238-386 509-644 (911)
485 PRK02287 hypothetical protein; 24.0 4.9E+02 0.011 23.3 7.8 57 473-529 108-165 (171)
486 PF13762 MNE1: Mitochondrial s 23.7 4.9E+02 0.011 22.6 10.7 77 272-348 43-129 (145)
487 COG5108 RPO41 Mitochondrial DN 23.7 4.1E+02 0.0089 29.4 8.5 72 406-481 33-112 (1117)
488 PF11525 CopK: Copper resistan 23.6 25 0.00055 25.4 -0.1 21 684-704 9-29 (73)
489 KOG2063 Vacuolar assembly/sort 23.5 1.2E+03 0.027 27.2 19.5 27 197-223 505-531 (877)
490 cd08332 CARD_CASP2 Caspase act 23.3 1.9E+02 0.0042 22.7 4.7 63 46-114 22-84 (90)
491 COG2909 MalT ATP-dependent tra 23.1 1.2E+03 0.026 27.0 26.4 24 441-464 623-646 (894)
492 cd08326 CARD_CASP9 Caspase act 23.1 3.5E+02 0.0076 20.9 6.0 61 254-318 20-80 (84)
493 PF00244 14-3-3: 14-3-3 protei 23.0 6.7E+02 0.014 23.9 12.1 162 407-569 7-200 (236)
494 KOG0508 Ankyrin repeat protein 22.6 2.5E+02 0.0055 29.4 6.5 145 273-429 119-274 (615)
495 COG0735 Fur Fe2+/Zn2+ uptake r 22.5 3.3E+02 0.0071 23.7 6.6 45 136-180 26-70 (145)
496 PF11817 Foie-gras_1: Foie gra 22.5 4.7E+02 0.01 25.1 8.4 53 442-494 184-240 (247)
497 PF09986 DUF2225: Uncharacteri 22.5 6.5E+02 0.014 23.6 10.6 19 514-532 175-193 (214)
498 KOG2908 26S proteasome regulat 22.4 8.2E+02 0.018 24.8 10.5 71 377-447 82-167 (380)
499 TIGR02710 CRISPR-associated pr 22.2 8.9E+02 0.019 25.1 11.9 28 409-436 138-165 (380)
500 KOG2471 TPR repeat-containing 21.4 1E+03 0.022 25.5 13.4 52 512-563 214-265 (696)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8e-128 Score=1101.93 Aligned_cols=672 Identities=39% Similarity=0.704 Sum_probs=658.4
Q ss_pred CCCCcchHHHHHhhccC---hHHHHHHHHHHHHhCCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCCCCcchHHHHH
Q 043060 26 KLLQNQPSLALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNII 102 (707)
Q Consensus 26 ~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li 102 (707)
..|+..+|..++++|+. +..++++|..+++.|+.+|+.++|+|+ .+|+++|++++|.++|++|++||+++||+||
T Consensus 183 ~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li--~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li 260 (857)
T PLN03077 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI--TMYVKCGDVVSARLVFDRMPRRDCISWNAMI 260 (857)
T ss_pred CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH--HHHhcCCCHHHHHHHHhcCCCCCcchhHHHH
Confidence 34678889999999876 788899999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChh
Q 043060 103 RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELE 182 (707)
Q Consensus 103 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 182 (707)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||+|+.+|+++|+++
T Consensus 261 ~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 340 (857)
T PLN03077 261 SGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHc
Q 043060 183 SARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262 (707)
Q Consensus 183 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 262 (707)
+|.++|++|..+|+++||+||.+|++.|++++|+++|++|. ..|+.||..||++++.+|++.|+++.|.++|+.+.+.
T Consensus 341 ~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~--~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~ 418 (857)
T PLN03077 341 EAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALME--QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK 418 (857)
T ss_pred HHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHH--HhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999995 4899999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHH
Q 043060 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342 (707)
Q Consensus 263 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 342 (707)
|+.++..++|+|+++|+++|++++|.++|++|.++|+++||++|.+|++.|+.++|+++|++|.. +++||..||+.++.
T Consensus 419 g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~ 497 (857)
T PLN03077 419 GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALS 497 (857)
T ss_pred CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999986 69999999999999
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 043060 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALS 422 (707)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 422 (707)
+|++.|+++.++++|..+.+.|..+ +..++|+|+++|+++|++++|.++|+.+ .+|+++||+||.+|+++|+.++|++
T Consensus 498 a~~~~g~l~~~~~i~~~~~~~g~~~-~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~ 575 (857)
T PLN03077 498 ACARIGALMCGKEIHAHVLRTGIGF-DGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVE 575 (857)
T ss_pred HHhhhchHHHhHHHHHHHHHhCCCc-cceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999998 9999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 043060 423 LFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502 (707)
Q Consensus 423 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 502 (707)
+|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+++++|+++|
T Consensus 576 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p 655 (857)
T PLN03077 576 LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITP 655 (857)
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCC
Confidence 99999999999999999999999999999999999999999788999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCccCCcccEEeECC
Q 043060 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582 (707)
Q Consensus 503 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~ 582 (707)
|..+|++|+.+|..+|+.+.|+.+.+++++++|+++..|..|+++|+..|+|++|.++++.|+++|++|+||+|||++++
T Consensus 656 d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~ 735 (857)
T PLN03077 656 DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKG 735 (857)
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCccCCccccccCchhhhhchhhhhhHHHHHHHhhccCCCCCeEEEEc
Q 043060 583 VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVK 662 (707)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~s~~la~~~~~~~~~~~~~~~~~~ 662 (707)
++|.|++||.+||+.++|+.+|+++..+|++.||+||+...+ ++++++|+..+++||||||+|||||++|+|.||||+|
T Consensus 736 ~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~k 814 (857)
T PLN03077 736 KVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTK 814 (857)
T ss_pred EEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeC
Confidence 999999999999999999999999999999999999999877 5578899999999999999999999999999999999
Q ss_pred cccccCchhHHHHHHhhhcCceEEEecCCccccccCccccCCC
Q 043060 663 NLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCND 705 (707)
Q Consensus 663 ~~~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~~s~~~ 705 (707)
|||||+|||+++||||++++|+|||||.+|||||++|+|||+|
T Consensus 815 nlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 815 NLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred CCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 9999999999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.8e-121 Score=1022.35 Aligned_cols=613 Identities=36% Similarity=0.631 Sum_probs=604.2
Q ss_pred CCCcchHHHHHHHHHcCCCchHHHHHHHHHHHCC-CCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 043060 92 EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG-FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTS 170 (707)
Q Consensus 92 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 170 (707)
.++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.++|..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4678899999999999999999999999999764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCch
Q 043060 171 LINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250 (707)
Q Consensus 171 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~ 250 (707)
|+.+|+++|++++|.++|++|+.+|+++||++|.+|++.|++++|+++|++|.. .|+.||..||+.++.+|+..|..+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~--~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE--DGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCChhhHHHHHHHHhcCCcHH
Confidence 999999999999999999999999999999999999999999999999999954 899999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 043060 251 LGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330 (707)
Q Consensus 251 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 330 (707)
.+.+++..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHH
Q 043060 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISG 410 (707)
Q Consensus 331 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 410 (707)
.||..||+.++.+|++.|+++.|+++|..+.+.|..+ +..++++|+++|+++|++++|.++|++|..+|+.+||+||.+
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~ 400 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL-DIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAG 400 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC-CeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHH
Confidence 9999999999999999999999999999999999987 999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 043060 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490 (707)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 490 (707)
|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCc
Q 043060 491 AEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570 (707)
Q Consensus 491 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 570 (707)
|.+++++|+..|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|..|+++|++.|+|++|.+++++|+++|++
T Consensus 481 A~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 481 AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccEEeECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCccCCccccccCchhhhhchhhhhhHHHHHHHhhc
Q 043060 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLI 650 (707)
Q Consensus 571 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~s~~la~~~~~~ 650 (707)
|.||+||+++++++|.|++||..||+.++|++.+.++..+|++.||+||+..+++++++++|+..+.+||||||+||||+
T Consensus 561 k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~ 640 (697)
T PLN03081 561 MHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLI 640 (697)
T ss_pred cCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEccccccCchhHHHHHHhhhcCceEEEecCCccccccCccccCCCCC
Q 043060 651 STKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707 (707)
Q Consensus 651 ~~~~~~~~~~~~~~~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~~s~~~~~ 707 (707)
++|+|.||||+||||+|+|||+|+||||++++|+|||||.+|||||+||+|||+|||
T Consensus 641 ~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 641 NTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred cCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.9e-81 Score=716.62 Aligned_cols=649 Identities=25% Similarity=0.411 Sum_probs=575.0
Q ss_pred CCcchHHHHHhhccC---hHHHHHHHHHHHHhCCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCCCCcchHHHHHHH
Q 043060 28 LQNQPSLALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRG 104 (707)
Q Consensus 28 ~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~ 104 (707)
++..++..++..|.. ++.+.++|..+++.+..++..++|+|+ .+|+++|+++.|.++|++|++||+++||.+|.+
T Consensus 84 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li--~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~ 161 (857)
T PLN03077 84 VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML--SMFVRFGELVHAWYVFGKMPERDLFSWNVLVGG 161 (857)
T ss_pred CChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHH--HHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHH
Confidence 455567777777754 788889999999999889999999999 999999999999999999999999999999999
Q ss_pred HHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHH
Q 043060 105 HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184 (707)
Q Consensus 105 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 184 (707)
|++.|++++|+++|++|...|+.||.+||+.++++|+..+++..+.++|..+++.|+.||..++|+|+.+|+++|++++|
T Consensus 162 ~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 241 (857)
T PLN03077 162 YAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSA 241 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCC
Q 043060 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264 (707)
Q Consensus 185 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 264 (707)
.++|++|+.+|+++||+||.+|++.|++++|+++|++|. ..|+.||..||+.++.+|++.|+++.|.+++..+.+.|+
T Consensus 242 ~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~--~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 319 (857)
T PLN03077 242 RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR--ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF 319 (857)
T ss_pred HHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHH--HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999995 489999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHH
Q 043060 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344 (707)
Q Consensus 265 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 344 (707)
.||..+||+|+++|+++|++++|.++|++|.++|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~ 399 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 043060 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF 424 (707)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 424 (707)
++.|+++.|.++|+.+.+.|..+ +..++++|+++|+++|++++|.++|++|..+|+++||+||.+|++.|+.++|+++|
T Consensus 400 ~~~g~~~~a~~l~~~~~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf 478 (857)
T PLN03077 400 ACLGDLDVGVKLHELAERKGLIS-YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFF 478 (857)
T ss_pred hccchHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH
Q 043060 425 SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504 (707)
Q Consensus 425 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~ 504 (707)
++|.. +++||..||+.++.+|++.|+++.+.+++..+.+. |+.++..++++|+++|+++|++++|.++|+++ .||.
T Consensus 479 ~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~ 554 (857)
T PLN03077 479 RQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDV 554 (857)
T ss_pred HHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCCh
Confidence 99986 59999999999999999999999999999999885 99999999999999999999999999999998 7899
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccC-CCCchhHHHHHHHhhhcCChhhHHHHHHHHh-hCCCccCCcccEEeECC
Q 043060 505 AIWTSLLGACRVHGRLELGESVAKHLLELE-PENPGAYVLLSNMYAGAGRWDDVATIRTRLN-DKGMKKVPGCSSIEVGS 582 (707)
Q Consensus 505 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~s~~~~~~ 582 (707)
.+|++++.+|.++|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|+.|. +.|+.++...-..
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~---- 630 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC---- 630 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH----
Confidence 999999999999999999999999999865 3477899999999999999999999999999 6787543321110
Q ss_pred EEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCccCCccccccCchhhhhchhhhhhHHHH-HHHhhccCCCCCeEEEE
Q 043060 583 VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLA-IAYGLISTKPGTTIRIV 661 (707)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~s~~la-~~~~~~~~~~~~~~~~~ 661 (707)
++......+.. ++..+.+++.+..||...|...+..+...+.+.- -|..+ ..+.+.+...+..+.+.
T Consensus 631 ----lv~~l~r~G~~-------~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~-~e~~a~~l~~l~p~~~~~y~ll~ 698 (857)
T PLN03077 631 ----VVDLLGRAGKL-------TEAYNFINKMPITPDPAVWGALLNACRIHRHVEL-GELAAQHIFELDPNSVGYYILLC 698 (857)
T ss_pred ----HHHHHHhCCCH-------HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHhhCCCCcchHHHHH
Confidence 11111122333 3344445555799999988776666644333211 12222 22445554444444344
Q ss_pred ccccccCchhHHHHHHhhhcCc--------eEEEecCCccccccCcccc
Q 043060 662 KNLRVCGNCHSATKLISKIFNR--------EIIARDRNRFHHFKDGNCS 702 (707)
Q Consensus 662 ~~~~~c~~~~~~~~~~s~~~~~--------~~~~~~~~~~h~~~~g~~s 702 (707)
.-....|+..++.+....|..+ ..|.- .+..|-|..|--|
T Consensus 699 n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~-~~~~~~f~~~d~~ 746 (857)
T PLN03077 699 NLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV-KGKVHAFLTDDES 746 (857)
T ss_pred HHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEE-CCEEEEEecCCCC
Confidence 5567789999999998877666 22222 3567788665443
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.5e-66 Score=578.11 Aligned_cols=502 Identities=19% Similarity=0.280 Sum_probs=463.2
Q ss_pred CCchhhhhhhchhhcccCCCChHHHHHHHhcCCCCCcch-----HHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccH
Q 043060 59 HNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVI-----WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTF 133 (707)
Q Consensus 59 ~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 133 (707)
.++...+..++ +.+.++|++++|+++|++|++++... ++.++.+|.+.|..++|+++|+.|.. ||..||
T Consensus 367 ~~~~~~~~~~y--~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 367 KRKSPEYIDAY--NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCchHHHHHH--HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 45666777888 88889999999999999999866554 45667789999999999999999974 999999
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCC----CCCeehHHHHHHHHHhC
Q 043060 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS----LRDAVSYTALITGYASR 209 (707)
Q Consensus 134 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~ 209 (707)
+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|+++|++++|.++|++|. .+|..+|++||.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999998 57999999999999999
Q ss_pred CChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcCCHHHH
Q 043060 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG--HGLGSNLHVTNALIDMYSKCGDLVKA 287 (707)
Q Consensus 210 g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A 287 (707)
|++++|+++|++|. ..|+.||..||+.++.+|++.|+++.|.++|..|.+ .|+.||..+|++|+++|+++|++++|
T Consensus 521 G~~eeAl~lf~~M~--~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 521 GQVAKAFGAYGIMR--SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred cCHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999995 489999999999999999999999999999999987 67899999999999999999999999
Q ss_pred HHHHHhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHh
Q 043060 288 RDLFESIEK----RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363 (707)
Q Consensus 288 ~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 363 (707)
.++|+.|.+ ++..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 999999985 4669999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 043060 364 HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG----YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439 (707)
Q Consensus 364 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 439 (707)
|..+ +..+|++||.+|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 679 G~~p-d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 679 GIKL-GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9988 99999999999999999999999999994 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH----HcC-------------------CHHHHHHHHH
Q 043060 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLG----RAG-------------------LFDEAEALLK 496 (707)
Q Consensus 440 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~ 496 (707)
+.++.+|++.|++++|.++|+.|.+. |+.||..+|++|++++. +++ ..++|..+|+
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYR 836 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHH
Confidence 99999999999999999999999876 99999999999997743 222 2467999999
Q ss_pred hC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcc-CCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCccC
Q 043060 497 TM---EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL-EPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572 (707)
Q Consensus 497 ~~---~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 572 (707)
+| ++.||..+|+.++.++.+.+..+.+..+++.+... .+++..+|..|++++.+. .++|..++++|.+.|+.+.
T Consensus 837 eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 837 ETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred HHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCC
Confidence 98 78999999999998888888899888888876543 456778999999988432 3689999999999999543
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-63 Score=558.47 Aligned_cols=497 Identities=16% Similarity=0.227 Sum_probs=463.6
Q ss_pred hHHHHHhhc---cChHHHHHHHHHHHHhCC-CCchhhhhhhchhhcccCCCChHHHHHHHhcCCCCCcchHHHHHHHHHc
Q 043060 32 PSLALLSKC---TNMQNIKQVHSQIIKTGL-HNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSL 107 (707)
Q Consensus 32 ~~~~~l~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 107 (707)
.+..++..+ ++++.|.++++.|.+.|. .++..+++.++ ..|.+.|.+++|.++|+.|+.||..+||.+|.+|++
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li--~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFF--KACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCAS 449 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHH--HHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 344444444 679999999999999986 56777888888 999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHH
Q 043060 108 SSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187 (707)
Q Consensus 108 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 187 (707)
.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~l 529 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCC----CCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcC
Q 043060 188 FNKSS----LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG 263 (707)
Q Consensus 188 f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 263 (707)
|++|. .||.++||.||.+|++.|++++|.++|++|.....++.||..||++++.+|++.|++++|.++|+.|.+.|
T Consensus 530 f~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 99996 46999999999999999999999999999964346899999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHh
Q 043060 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEK----RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS 339 (707)
Q Consensus 264 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 339 (707)
+.|+..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..+|+.
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns 689 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 999999999999999999999999999999984 6899999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC----CCChHHHHHHHHHHHHcC
Q 043060 340 VLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG----YKTLASWNAMISGLAMHG 415 (707)
Q Consensus 340 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g 415 (707)
++.+|++.|++++|.++|+.|.+.|..+ +..+||.||.+|++.|++++|.++|++|. .||..+|++++.+|++.|
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G 768 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999887 99999999999999999999999999984 579999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----c-------------------CCHHHHHHHHHHhHHhcCCCCCh
Q 043060 416 KADKALSLFSRMIGEGLQPDDITFVGVLSACNH----A-------------------GLLDIGRQYFNAMIQDYKISPKL 472 (707)
Q Consensus 416 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~-------------------g~~~~a~~~~~~~~~~~~~~p~~ 472 (707)
+.++|.++|++|.+.|+.||..+|+.++..|.+ . +..++|..+|++|.+. |+.||.
T Consensus 769 ~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-Gi~Pd~ 847 (1060)
T PLN03218 769 DADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA-GTLPTM 847 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-CCCCCH
Confidence 999999999999999999999999999876542 1 2246799999999886 999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 043060 473 QHYGCMVDLLGRAGLFDEAEALLKTME---MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534 (707)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 534 (707)
.+|+.++.++.+.+..+.+..+++.|+ ..|+..+|++|+.++.+. .++|..++++|.+.+
T Consensus 848 ~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 848 EVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 999999999999999999999999984 456789999999998543 468999999999876
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.4e-64 Score=562.20 Aligned_cols=434 Identities=25% Similarity=0.451 Sum_probs=404.9
Q ss_pred CCcchHHHHHhhccC---hHHHHHHHHHHHHhCCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCCCCcchHHHHHHH
Q 043060 28 LQNQPSLALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRG 104 (707)
Q Consensus 28 ~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~ 104 (707)
++..+|..++.+|.. .+.++++|..+.+.|+.||+.++|.|+ ++|+++|++++|.++|++|++||+++||++|.+
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li--~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~ 198 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL--LMHVKCGMLIDARRLFDEMPERNLASWGTIIGG 198 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH--HHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHH
Confidence 456778888888865 788999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHH
Q 043060 105 HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184 (707)
Q Consensus 105 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 184 (707)
|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.++++|..+.+.|+.+|..++|+|+++|+++|++++|
T Consensus 199 ~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 278 (697)
T PLN03081 199 LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278 (697)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCC
Q 043060 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264 (707)
Q Consensus 185 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 264 (707)
.++|++|+.+|+++||+||.+|++.|++++|+++|++|. +.|+.||..||++++.+|++.|+++.|.++|..|.+.|+
T Consensus 279 ~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~--~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~ 356 (697)
T PLN03081 279 RCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMR--DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF 356 (697)
T ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999995 489999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHH
Q 043060 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344 (707)
Q Consensus 265 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 344 (707)
.||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|
T Consensus 357 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCchHHHHHHHHHHHh-CCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC-CCChHHHHHHHHHHHHcCCHHHHHH
Q 043060 345 AYLGALDLGKWIHAYIDKN-HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG-YKTLASWNAMISGLAMHGKADKALS 422 (707)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~ 422 (707)
++.|.+++|.++|+.|.+. |..+ +..+|+.++++|++.|++++|.++|++|+ .++..+|++|+.+|..+|+.+.|..
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKP-RAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCC-CccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999999999874 6665 99999999999999999999999999886 4688888888888888888888888
Q ss_pred HHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 043060 423 LFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS 469 (707)
Q Consensus 423 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 469 (707)
+++++.+ +.|+. .+|..+++.|++.|++++|.++++.|.+. |+.
T Consensus 516 ~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~ 560 (697)
T PLN03081 516 AAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLS 560 (697)
T ss_pred HHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCc
Confidence 8888865 55653 47777777777777777777777777654 543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9.2e-31 Score=307.41 Aligned_cols=522 Identities=14% Similarity=0.087 Sum_probs=382.8
Q ss_pred hHHHHHhhccChHHHHHHHHHHHHhCCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcC
Q 043060 32 PSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE---PNQVIWNNIIRGHSLS 108 (707)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 108 (707)
.+..++...+..+.+...+..+.+... .+...++.+. ..|.+.|++++|.+.|+++.+ .+...|..+...+...
T Consensus 334 ~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 410 (899)
T TIGR02917 334 LLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLG--EAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQ 410 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHH--HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Confidence 344555556678888888887776543 3556677777 788888888899888887653 3455677777888888
Q ss_pred CCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHH
Q 043060 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF 188 (707)
Q Consensus 109 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f 188 (707)
|++++|++.|+.+.+.. +.+......++..+.+.|++++|..+++.+.+.. +.++.++..+...|...|++++|...|
T Consensus 411 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 488 (899)
T TIGR02917 411 GDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAF 488 (899)
T ss_pred CChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHH
Confidence 88888888888887653 2233445556677778888888888888877643 456677888888888888888888888
Q ss_pred hcCC---CCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCC
Q 043060 189 NKSS---LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265 (707)
Q Consensus 189 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 265 (707)
+++. ..+...+..+...+...|++++|.+.|+++.. ..+.+..++..+...+...|+.++|...+..+.+.+ +
T Consensus 489 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 564 (899)
T TIGR02917 489 EKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLT---IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-P 564 (899)
T ss_pred HHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 7654 23556677777888888888888888888752 123355667777777778888888888888777664 4
Q ss_pred chhHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHH
Q 043060 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEK---RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342 (707)
Q Consensus 266 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 342 (707)
.+...+..++..|.+.|++++|..+++.+.+ .+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+..
T Consensus 565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 643 (899)
T TIGR02917 565 QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLAD 643 (899)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 4566777788888888888888888877753 356678888888888888888888888877643 234556666777
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHH
Q 043060 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKADK 419 (707)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 419 (707)
.+...|+++.|..++..+.+..+. +...+..++..+...|++++|.++++.+.. .+...|..+...+...|++++
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALELKPD--NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHH
Confidence 777788888888888887776654 667777788888888888888888877743 355567777777888888888
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 043060 420 ALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM- 498 (707)
Q Consensus 420 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~- 498 (707)
|++.|+++.. ..|+..++..+..++.+.|++++|.+.++.+.+ ..+.+...+..+...|.+.|++++|.+.|+++
T Consensus 722 A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 797 (899)
T TIGR02917 722 AIQAYRKALK--RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVV 797 (899)
T ss_pred HHHHHHHHHh--hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 8888888877 445556677777777888888888888877766 34456677777777888888888888888776
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCc
Q 043060 499 EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570 (707)
Q Consensus 499 ~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 570 (707)
...| +..+++.++..+...|+ ++|+..++++++..|+++..+..++.+|...|++++|.++++++.+.+..
T Consensus 798 ~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 798 KKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3334 36677777777777777 66777777777777777777777777777778888888877777776553
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.2e-30 Score=306.48 Aligned_cols=520 Identities=14% Similarity=0.046 Sum_probs=438.9
Q ss_pred HHHHHhhccChHHHHHHHHHHHHhCCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCC
Q 043060 33 SLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE---PNQVIWNNIIRGHSLSS 109 (707)
Q Consensus 33 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 109 (707)
...++...+..+.+...+..+++... .+......+. ..+.+.|++++|...+..+.. .+...|+.+...+.+.|
T Consensus 301 ~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 377 (899)
T TIGR02917 301 AGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLA--SIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALG 377 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHH--HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCC
Confidence 34445556778999999998887643 3455666677 788899999999999988754 35667888999999999
Q ss_pred CchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHh
Q 043060 110 SPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN 189 (707)
Q Consensus 110 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 189 (707)
++++|.++|+++.+.. +.+...+..+...+...|++++|.+.+..+.+.. +........++..|.+.|++++|..+++
T Consensus 378 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 455 (899)
T TIGR02917 378 DFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAK 455 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999998753 3355667777888889999999999999998775 2334566778889999999999999998
Q ss_pred cCCC---CCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCc
Q 043060 190 KSSL---RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS 266 (707)
Q Consensus 190 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~ 266 (707)
++.. .+..+|+.+...+...|++++|.+.|+++.. ..+.+...+..+...+...|++++|.+.+..+.+.. +.
T Consensus 456 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~ 531 (899)
T TIGR02917 456 KLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALS---IEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PK 531 (899)
T ss_pred HHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cC
Confidence 8763 3677899999999999999999999999853 122345567778888999999999999999998875 55
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHH
Q 043060 267 NLHVTNALIDMYSKCGDLVKARDLFESIEK---RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343 (707)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 343 (707)
+..++..+...|.+.|+.++|...|+++.+ .+...+..++..|.+.|++++|+.+++++.... +.+..++..+...
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 610 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRA 610 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 788899999999999999999999998854 355678889999999999999999999998753 4567788889999
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHH
Q 043060 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKA 420 (707)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 420 (707)
+...|+++.|...+..+.+..+. +...+..+..+|.+.|++++|..+|+++. ..+..+|..++..+...|++++|
T Consensus 611 ~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 688 (899)
T TIGR02917 611 QLAAGDLNKAVSSFKKLLALQPD--SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESA 688 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999987765 67788899999999999999999999874 34677999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 043060 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-E 499 (707)
Q Consensus 421 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 499 (707)
.++++.+.+.+ +++...+..+...+...|++++|...|+.+... .|+..++..++.++.+.|++++|.+.++++ .
T Consensus 689 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 689 KKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999998863 445567888888999999999999999998753 455577888999999999999999999886 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 500 MKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 500 ~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
..| +..++..+...|...|+.++|...++++++..|+++.++..++.++...|+ .+|+.+++++.+...
T Consensus 765 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 765 THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP 834 (899)
T ss_pred hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC
Confidence 344 478889999999999999999999999999999999999999999999999 889999999987543
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.97 E-value=2.9e-31 Score=218.02 Aligned_cols=106 Identities=67% Similarity=1.039 Sum_probs=96.2
Q ss_pred cccEEeECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCccCCccccccCchhhh--------hchhhhhhHHHHH
Q 043060 574 GCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK--------EGALSHHSEKLAI 645 (707)
Q Consensus 574 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~s~~la~ 645 (707)
||||+++ |.|++|+.+||+. ++..++...||.|++....+++.++.+ +..+.+||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899986 9999999999988 445567788999999999988877665 5678999999999
Q ss_pred HHhhccCCCCCeEEEEccc-cccCchhHHHHHHhhhcCceEEEecCCcccccc
Q 043060 646 AYGLISTKPGTTIRIVKNL-RVCGNCHSATKLISKIFNREIIARDRNRFHHFK 697 (707)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~-~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~ 697 (707)
||||+++ +|+||+ |||+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 889999 999999999999999999999999999999996
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=3.3e-22 Score=235.58 Aligned_cols=513 Identities=11% Similarity=0.041 Sum_probs=362.0
Q ss_pred HHHHhhccChHHHHHHHHHHHHhCCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHcCCC
Q 043060 34 LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE--P-NQVIWNNIIRGHSLSSS 110 (707)
Q Consensus 34 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~ 110 (707)
+.++...+..+.|.+.+..+++............+. ......|+.++|++.|+++.+ | +...+..+...+...|+
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~--~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWR--LVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHH--HHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC
Confidence 345556677899999999888654332221111112 223356899999999999875 4 44567788889999999
Q ss_pred chHHHHHHHHHHHCCC----------------C----------------CCcccHH---------------------HHH
Q 043060 111 PVVAIKFYVRMILSGF----------------V----------------PNTYTFP---------------------FIL 137 (707)
Q Consensus 111 ~~~A~~~~~~m~~~g~----------------~----------------p~~~t~~---------------------~ll 137 (707)
+++|++.|+++..... . |+...+. ...
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 9999999998864320 0 1100000 011
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCe-----ehHHHH----------
Q 043060 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA-----VSYTAL---------- 202 (707)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~-----~~~~~l---------- 202 (707)
..+...|++++|...+++.++.. +.+..++..|...|.+.|++++|+..|++....+. ..|..+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 23445677777777777777653 34566777777777777888888777776543211 112221
Q ss_pred --HHHHHhCCChhHHHHHHHhCccccCCCCC-CHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 043060 203 --ITGYASRGYLDDARQLFDEMPIREENFVP-NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYS 279 (707)
Q Consensus 203 --i~~~~~~g~~~~A~~l~~~m~~~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 279 (707)
...+.+.|++++|+..|+++.. ..| +...+..+...+...|++++|.+.++.+++.. +.+...+..+...|.
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~----~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQ----VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3345667777888887777743 223 34455566677777778888888777777653 334555666666664
Q ss_pred hcCCHHHHHHHHHhcCCCC------------hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-ChhhHHhHHHHHhc
Q 043060 280 KCGDLVKARDLFESIEKRD------------VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP-NDVTFLSVLPACAY 346 (707)
Q Consensus 280 ~~g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~ 346 (707)
.++.++|..+++.+.... ...+..+...+...|++++|++.|++..+. .| +...+..+...+..
T Consensus 431 -~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 431 -QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred -hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 356777777777665321 123445566778889999999999998875 34 34456667778889
Q ss_pred cCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCC----ChH---------HHHHHHHHHHH
Q 043060 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK----TLA---------SWNAMISGLAM 413 (707)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~~---------~~~~li~~~~~ 413 (707)
.|++++|...++.+.+..+. +...+..+...+.+.|+.++|...++.+... +.. .+..+...+..
T Consensus 508 ~G~~~~A~~~l~~al~~~P~--~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQKPN--DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred cCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999998887665 5555566666777889999999999887532 111 12345667888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 043060 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493 (707)
Q Consensus 414 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 493 (707)
.|+.++|+.+++. .+++...+..+...+.+.|++++|...|+.+.+. -+.+...+..++.+|...|++++|++
T Consensus 586 ~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 586 SGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred CCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999872 2344456777888999999999999999999873 34467889999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc------hhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 494 LLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENP------GAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 494 ~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
.++.. ...|+ ..++..+..++...|++++|.+.++++++..|+++ ..+..++.++...|++++|++.+++..
T Consensus 659 ~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 659 QLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99986 45565 66788888899999999999999999998876544 356677999999999999999998886
Q ss_pred h
Q 043060 566 D 566 (707)
Q Consensus 566 ~ 566 (707)
.
T Consensus 739 ~ 739 (1157)
T PRK11447 739 V 739 (1157)
T ss_pred h
Confidence 4
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=3.1e-22 Score=235.75 Aligned_cols=511 Identities=14% Similarity=0.075 Sum_probs=281.0
Q ss_pred ccChHHHHHHHHHHHHhCCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCC--CCcch-H----------------HH
Q 043060 40 CTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE--PNQVI-W----------------NN 100 (707)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~--~~~~~-~----------------~~ 100 (707)
-.+.+.+++....+..... .++.++..+. ..+.+.|+.++|.+.+++..+ |+... + ..
T Consensus 41 ~~~~d~a~~~l~kl~~~~p-~~p~~~~~~~--~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~ 117 (1157)
T PRK11447 41 THREDLVRQSLYRLELIDP-NNPDVIAARF--RLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQ 117 (1157)
T ss_pred hCChHHHHHHHHHHHccCC-CCHHHHHHHH--HHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHH
Confidence 3458888888888776533 3566777777 788999999999999999864 43322 1 22
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHCCCCCCccc-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC
Q 043060 101 IIRGHSLSSSPVVAIKFYVRMILSGFVPNTYT-FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNG 179 (707)
Q Consensus 101 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 179 (707)
+...+...|++++|++.|+++.+.. +|+... ...........|+.++|...++.+++.. +.+...+..+...+...|
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccC
Confidence 3446888999999999999998653 444321 1111222234689999999999999875 456778889999999999
Q ss_pred ChhHHHHHHhcCCCCCe------ehH-----------------HHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhH
Q 043060 180 ELESARLVFNKSSLRDA------VSY-----------------TALITGYASRGYLDDARQLFDEMPIREENFVPNESTV 236 (707)
Q Consensus 180 ~~~~A~~~f~~~~~~~~------~~~-----------------~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~ 236 (707)
+.++|+..|+++..... ..| ...+..+-.....+.|...+..+.. ....|+...
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~--~~~dp~~~~- 272 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK--QLADPAFRA- 272 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH--hccCcchHH-
Confidence 99999999988743211 011 1111111111112233333333211 111121111
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-----hhHHH-------
Q 043060 237 VTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV-----ISWNV------- 304 (707)
Q Consensus 237 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~------- 304 (707)
......+...|++++|...++..++.. +.+..++..|...|.+.|++++|+..|++..+.+. ..|..
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 112233445566666666666666542 33455666666666666666666666666543111 11211
Q ss_pred -----HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhH
Q 043060 305 -----MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379 (707)
Q Consensus 305 -----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 379 (707)
....+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++.+.+..+. +...+..+...
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~--~~~a~~~L~~l 428 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG--NTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Confidence 1234456666666666666666542 123334444555566666666666666666665544 33344444444
Q ss_pred ------------------------------------------HHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHc
Q 043060 380 ------------------------------------------YAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMH 414 (707)
Q Consensus 380 ------------------------------------------y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 414 (707)
+...|++++|.+.|++... .+...+..+...|.+.
T Consensus 429 ~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 429 YRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4444555555555554421 1333444455555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh---------HHHHHHHHHHHH
Q 043060 415 GKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL---------QHYGCMVDLLGR 484 (707)
Q Consensus 415 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---------~~~~~li~~~~~ 484 (707)
|++++|+..|+++.+ ..|+.. .+..+...+...++.++|...++.+... ...++. ..+..+.+.+..
T Consensus 509 G~~~~A~~~l~~al~--~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 509 GQRSQADALMRRLAQ--QKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred CCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 555555555555544 233222 2222222334445555555555443211 000000 001122334445
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHH
Q 043060 485 AGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564 (707)
Q Consensus 485 ~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 564 (707)
.|+.++|.++++.-+ ++...+..+...+.+.|++++|+..++++++.+|+++.++..++.+|...|++++|++.++..
T Consensus 586 ~G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 586 SGKEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred CCCHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 555555555555321 223445556666666666666666666666666666666666666666666666666666655
Q ss_pred hhC
Q 043060 565 NDK 567 (707)
Q Consensus 565 ~~~ 567 (707)
.+.
T Consensus 664 l~~ 666 (1157)
T PRK11447 664 PAT 666 (1157)
T ss_pred hcc
Confidence 543
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=2.9e-22 Score=199.21 Aligned_cols=446 Identities=16% Similarity=0.131 Sum_probs=363.7
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 043060 98 WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ 177 (707)
Q Consensus 98 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 177 (707)
-..+..-..+.|++.+|.+.-...-+.. +.+......+-..+.+..+++...+--...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4455666778899999998776554432 3333444444445555556665544443344332 3345689999999999
Q ss_pred CCChhHHHHHHhcCCCC---CeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHH-HHhccCCchHHH
Q 043060 178 NGELESARLVFNKSSLR---DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLS-ACAHMGSLELGN 253 (707)
Q Consensus 178 ~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~-~~~~~g~~~~a~ 253 (707)
.|++++|..+++.+.+. .+..|..+..++...|+.+.|.+.|.+.+ .+.|+.....+-+. ..-..|.+++|.
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~al----qlnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEAL----QLNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHH----hcCcchhhhhcchhHHHHhhcccchhH
Confidence 99999999999977643 67899999999999999999999999984 46677665443333 334568999999
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 043060 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV---ISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330 (707)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 330 (707)
..+.+.+... +.-..+|+.|...+-..|++..|+.-|++..+-|+ .+|-.|...|...+.+++|+..|.+....
T Consensus 205 ~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 205 ACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 9988888763 22356789999999999999999999999876543 57888999999999999999999988764
Q ss_pred CCC-hhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHH
Q 043060 331 EPN-DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNA 406 (707)
Q Consensus 331 ~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~ 406 (707)
.|+ .+.+..+...|...|.++.|+..+++.+...+. -+..|+.|..++-..|++.+|.+.+.+.. .....+.+.
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~--F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~N 359 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN--FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNN 359 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC--chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHH
Confidence 564 456667777788899999999999999998887 46679999999999999999999999864 335668899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHH
Q 043060 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL-QHYGCMVDLLGR 484 (707)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~ 484 (707)
|...|...|.+++|..+|....+ +.|.-. .++.|...|-.+|++++|..-+++.+ .+.|+. ..|+.|.+.|-.
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHH
Confidence 99999999999999999999998 788765 78999999999999999999999987 577764 789999999999
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHH
Q 043060 485 AGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559 (707)
Q Consensus 485 ~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 559 (707)
.|+.++|...+.+. .+.|. ....+.|...+...|++.+|+..|+.++++.|+.+.+|-.++.++.-..+|.+=.+
T Consensus 435 ~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~ 511 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDK 511 (966)
T ss_pred hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHH
Confidence 99999999999886 78887 88999999999999999999999999999999999999999998887777777433
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.3e-21 Score=194.56 Aligned_cols=420 Identities=13% Similarity=0.145 Sum_probs=342.9
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCC---CCCeehHHHHHHHHHhCCC
Q 043060 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS---LRDAVSYTALITGYASRGY 211 (707)
Q Consensus 135 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~ 211 (707)
.+..-..+.|++.+|++--..+-... +.+....-.+-..+....+++....--.... ..-..+|..+...+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 34444556788888887555443332 2222233333445666666665433222221 1245689999999999999
Q ss_pred hhHHHHHHHhCccccCCCCC-CHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhH-HHHHHHHHHHhcCCHHHHHH
Q 043060 212 LDDARQLFDEMPIREENFVP-NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH-VTNALIDMYSKCGDLVKARD 289 (707)
Q Consensus 212 ~~~A~~l~~~m~~~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~ 289 (707)
.++|+.+++.|.+ .+| ....|..+..++...|+.+.|.+.+...++. .|+.. +.+.+.......|++++|..
T Consensus 132 ~~~al~~y~~aie----l~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 132 LQDALALYRAAIE----LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HHHHHHHHHHHHh----cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 9999999999953 455 4567889999999999999999999999876 45543 44556667777899999999
Q ss_pred HHHhcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh-hhHHhHHHHHhccCCchHHHHHHHHHHHhCC
Q 043060 290 LFESIEKRD---VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND-VTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365 (707)
Q Consensus 290 ~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 365 (707)
.|.+..+-+ .+.|+.|...+-.+|+...|++.|++.... .|+- ..|..+-..+...+.++.|...+.......+
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 988866433 468999999999999999999999999874 5543 4677788888888899999998888877666
Q ss_pred CCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHH
Q 043060 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK---TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVG 441 (707)
Q Consensus 366 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ 441 (707)
. ...++..|...|...|.++.|+..+++..+. =...|+.|..++-..|+..+|...|.+.+. +.|+.. ..+.
T Consensus 284 n--~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~N 359 (966)
T KOG4626|consen 284 N--HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNN 359 (966)
T ss_pred c--chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHH
Confidence 5 7888999999999999999999999987543 346999999999999999999999999998 777766 8899
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 043060 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPK-LQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHG 518 (707)
Q Consensus 442 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g 518 (707)
|...+...|.+++|..+|....+ +.|. ....+.|...|-.+|++++|+.-+++. .++|. ...++.+...|...|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhh
Confidence 99999999999999999998864 4554 467889999999999999999999986 89998 889999999999999
Q ss_pred ChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCc
Q 043060 519 RLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570 (707)
Q Consensus 519 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 570 (707)
+.+.|.+.+.+++..+|.-..++..|+.+|-..|+..+|+.-++...+....
T Consensus 437 ~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999999999999999999876654
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=1.4e-18 Score=195.66 Aligned_cols=508 Identities=11% Similarity=0.045 Sum_probs=316.6
Q ss_pred cChHHHHHHHHHHHHhCCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCC--CCcchHHHHHHHHHcCCCchHHHHHH
Q 043060 41 TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE--PNQVIWNNIIRGHSLSSSPVVAIKFY 118 (707)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~ 118 (707)
++.+.|...+..+++..+.. ..++..|. ..|.+.|+.++|+..+++..+ |+-..|..++..+ +++.+|..+|
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA--~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDN-IPLTLYLA--EAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCC-HHHHHHHH--HHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 55889999999988876554 77788888 899999999999999988764 4333333333333 7777888888
Q ss_pred HHHHHCC------------------------------------CCCC--cccHHHH-HHHHhccCChHHHHHHHHHHHHh
Q 043060 119 VRMILSG------------------------------------FVPN--TYTFPFI-LKSCAKISAISEGKQIHAHVLKL 159 (707)
Q Consensus 119 ~~m~~~g------------------------------------~~p~--~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~ 159 (707)
+++.... ..|+ ..+.... .+.+...+++++|..++..+.+.
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~ 211 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQ 211 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhc
Confidence 8876542 1121 2222222 45566677788888888888877
Q ss_pred CCCCChhHHHHHHHHHHh-CCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHH
Q 043060 160 GLESDPFVHTSLINMYAQ-NGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVT 238 (707)
Q Consensus 160 g~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ 238 (707)
+ +.+......|...|.. .++ +++..+++.....|...+..++..|.+.|+.++|.++++++..... -.|...++.-
T Consensus 212 ~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~-~~~~~~~~~~ 288 (987)
T PRK09782 212 N-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT-TDAQEKSWLY 288 (987)
T ss_pred C-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc-CCCccHHHHH
Confidence 6 3344556666667776 355 7777776654455788889999999999999999999999843210 0122211111
Q ss_pred ------------------------------HHHHHhccCCchHHHHH-----------------------------HHHH
Q 043060 239 ------------------------------VLSACAHMGSLELGNWV-----------------------------CSLI 259 (707)
Q Consensus 239 ------------------------------ll~~~~~~g~~~~a~~~-----------------------------~~~~ 259 (707)
++..+.+.++++.++++ ...+
T Consensus 289 ~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 368 (987)
T PRK09782 289 LLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLL 368 (987)
T ss_pred HHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHH
Confidence 12223333333333332 1122
Q ss_pred HHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC-C-C----hhhHHHHHHHHHhcCC---HH--------------
Q 043060 260 EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK-R-D----VISWNVMIGGYTHTSD---YK-------------- 316 (707)
Q Consensus 260 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-~----~~~~~~li~~~~~~g~---~~-------------- 316 (707)
.+. .+.+....--+.-...+.|+.++|.++|+.... + + ...-+-++..|.+.+. ..
T Consensus 369 y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 447 (987)
T PRK09782 369 YQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQ 447 (987)
T ss_pred Hhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchh
Confidence 221 123555555555566777888888888777654 1 1 1223345555554433 11
Q ss_pred --------H---HHHHHHHHhhcCCCC--ChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhc
Q 043060 317 --------E---ALMLFRQMLQSNIEP--NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383 (707)
Q Consensus 317 --------~---A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 383 (707)
+ +...+....... ++ +...+..+..++.. +..++|...+.......+. ......+...+...
T Consensus 448 ~~~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd---~~~~L~lA~al~~~ 522 (987)
T PRK09782 448 RQWQSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD---AWQHRAVAYQAYQV 522 (987)
T ss_pred HHHHhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc---hHHHHHHHHHHHHC
Confidence 1 222222332211 12 33344444444443 6777777766666665543 22233344445577
Q ss_pred CCHHHHHHHHhcCCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHH
Q 043060 384 GNIKAAEQVFDGMGY--KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFN 460 (707)
Q Consensus 384 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 460 (707)
|++++|...|+++.. ++...+..+...+.+.|+.++|...|++.++. .|+.. .+..+.......|++++|...++
T Consensus 523 Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~ 600 (987)
T PRK09782 523 EDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDLT 600 (987)
T ss_pred CCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 888888887776532 33445666666777778888888888777763 34443 23333344455678888888877
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 043060 461 AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 461 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 538 (707)
...+ ..|+...|..+..++.+.|++++|+..+++. ...|+ ...++.+..++...|+.++|+..++++++.+|+++
T Consensus 601 ~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~ 677 (987)
T PRK09782 601 RSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP 677 (987)
T ss_pred HHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 7764 3456677777777778888888888877775 55665 66677777777778888888888888888888877
Q ss_pred hhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 539 GAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
.++..++.+|...|++++|...+++..+..
T Consensus 678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 678 ALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 788888888888888888887777776544
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=1.9e-18 Score=194.41 Aligned_cols=477 Identities=12% Similarity=0.015 Sum_probs=336.3
Q ss_pred cccCCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHH
Q 043060 73 AVSPFGDLSYALLVFETIRE--P-NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG 149 (707)
Q Consensus 73 ~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 149 (707)
.+...|++++|...|+...+ | +..++..+...|...|++++|+..+++..+. .|+...|..++..+ ++..+|
T Consensus 53 ~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA 127 (987)
T PRK09782 53 KAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKS 127 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhH
Confidence 34456999999999998864 4 4567888999999999999999999999976 46555555555333 889999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHH--------HHhCCChhHHHHHHhcCCCC-Ceeh-HHHHHHHHHhCCChhHHHHHH
Q 043060 150 KQIHAHVLKLGLESDPFVHTSLINM--------YAQNGELESARLVFNKSSLR-DAVS-YTALITGYASRGYLDDARQLF 219 (707)
Q Consensus 150 ~~~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~f~~~~~~-~~~~-~~~li~~~~~~g~~~~A~~l~ 219 (707)
..+++++++.. +.+..++..+... |.+.+...+++. .+..... +..+ .-.+...|.+.|++++|++++
T Consensus 128 ~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 128 VTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 99999999885 4445666666665 887777777776 3333322 3333 444489999999999999999
Q ss_pred HhCccccCCCCCCHhhHHHHHHHHhc-cCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-
Q 043060 220 DEMPIREENFVPNESTVVTVLSACAH-MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR- 297 (707)
Q Consensus 220 ~~m~~~~~~~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 297 (707)
.++.+ .+ +.+..-...+-.++.. .++ +.+..++.. .+..++.+...+++.|.+.|+.++|.++++++...
T Consensus 206 ~~L~k--~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 206 NEARQ--QN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHh--cC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 99953 32 2233335556667776 366 666666442 33468889999999999999999999999887621
Q ss_pred ----ChhhHH------------------------------HHHHH-----------------------------------
Q 043060 298 ----DVISWN------------------------------VMIGG----------------------------------- 308 (707)
Q Consensus 298 ----~~~~~~------------------------------~li~~----------------------------------- 308 (707)
+..+|- .++..
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCc
Confidence 000000 00111
Q ss_pred ----------------------------HHhcCCHHHHHHHHHHHhhc-C-CCCChhhHHhHHHHHhccCCch---HH--
Q 043060 309 ----------------------------YTHTSDYKEALMLFRQMLQS-N-IEPNDVTFLSVLPACAYLGALD---LG-- 353 (707)
Q Consensus 309 ----------------------------~~~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ll~~~~~~~~~~---~a-- 353 (707)
..+.|+.++|.++|++.... + -.++......++..+...+.+. .+
T Consensus 358 ~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 358 KAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 13445566666666665541 1 1222222334555555444321 11
Q ss_pred --------------------HHHHHHHHHh-CCCCC--cHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHH--
Q 043060 354 --------------------KWIHAYIDKN-HQKLN--NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI-- 408 (707)
Q Consensus 354 --------------------~~~~~~~~~~-~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li-- 408 (707)
........+. +..++ +...+..+..++.. |+.++|...|.+.....+..++.+.
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA 516 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVA 516 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHH
Confidence 1122222222 22233 56677778887776 7888898877765433223444444
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCH
Q 043060 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488 (707)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 488 (707)
..+.+.|++++|+..|+++.. ..|+...+..+..++.+.|+.++|..+++...+. .++....+..+...+.+.|++
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~--~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISL--HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhc--cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCH
Confidence 444689999999999999876 4566666677778889999999999999998763 233434444444555567999
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 489 DEAEALLKTM-EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 489 ~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
++|...+++. ...|+...|..+...+.+.|+.++|+..++++++++|+++..+..++.++...|++++|+..+++..+.
T Consensus 593 ~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 593 ELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999986 677888899999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 043060 568 GM 569 (707)
Q Consensus 568 ~~ 569 (707)
..
T Consensus 673 ~P 674 (987)
T PRK09782 673 LP 674 (987)
T ss_pred CC
Confidence 54
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=1e-18 Score=193.52 Aligned_cols=250 Identities=15% Similarity=0.129 Sum_probs=198.5
Q ss_pred cCCHHHHHHHHHHHhhcC-CCCC-hhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHH
Q 043060 312 TSDYKEALMLFRQMLQSN-IEPN-DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389 (707)
Q Consensus 312 ~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 389 (707)
.+++++|++.|++..+.+ ..|+ ...+..+...+...|+++.|...++.++...+. ....+..+...|...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~--~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR--VTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHCCCHHHH
Confidence 467788888888887654 2332 344555566667788888888888888877655 566788888889999999999
Q ss_pred HHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 043060 390 EQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQD 465 (707)
Q Consensus 390 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 465 (707)
...|+++. ..+...|..+...+...|++++|+..|++.++ ..|+. ..+..+..++.+.|++++|...|+...+
T Consensus 385 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~- 461 (615)
T TIGR00990 385 EEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK- 461 (615)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 99998763 34677888999999999999999999999988 56664 4677788888999999999999999876
Q ss_pred cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HH-------HHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 043060 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AA-------IWTSLLGACRVHGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 466 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~-------~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 536 (707)
..+.+...|+.+..+|...|++++|++.|++. ...|+ .. .++..+..+...|++++|...++++++++|+
T Consensus 462 -~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 462 -NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred -hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 33446778888999999999999999999985 44443 11 1222223344569999999999999999999
Q ss_pred CchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 537 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
+..++..++.++.+.|++++|++.+++..+.
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998764
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=5e-19 Score=186.18 Aligned_cols=293 Identities=13% Similarity=0.099 Sum_probs=199.9
Q ss_pred HHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC---hhhHHhHHHHHhccCCch
Q 043060 278 YSKCGDLVKARDLFESIEKR---DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN---DVTFLSVLPACAYLGALD 351 (707)
Q Consensus 278 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~ 351 (707)
+...|++++|...|+++.+. +..+|..+...+...|++++|+.+++.+...+..++ ...+..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34445555555555554432 223445555555555555555555555544321111 123344444555555555
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCC--------hHHHHHHHHHHHHcCCHHHHHHH
Q 043060 352 LGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT--------LASWNAMISGLAMHGKADKALSL 423 (707)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~ 423 (707)
.|..++..+.+..+. +..+++.++.+|.+.|++++|.+.|+.+...+ ...|..++..+.+.|++++|+..
T Consensus 125 ~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 125 RAEELFLQLVDEGDF--AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHcCCcc--hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 555555555544322 55566777777777777777777777663221 12355677778888999999999
Q ss_pred HHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 043060 424 FSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMK 501 (707)
Q Consensus 424 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 501 (707)
|+++.+ ..|+. ..+..+...+.+.|++++|.++|+++.+. ........++.++.+|.+.|++++|.+.++++ ...
T Consensus 203 ~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 203 LKKALA--ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHh--HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999887 34553 46777788889999999999999998753 21122456788899999999999999999987 556
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhh---cCChhhHHHHHHHHhhCCCccCCccc
Q 043060 502 PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAG---AGRWDDVATIRTRLNDKGMKKVPGCS 576 (707)
Q Consensus 502 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~s 576 (707)
|+...+..++..+.+.|++++|..+++++++..|++. .+..+...+.. .|+.+++..++++|.+++++++|...
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 8877778899999999999999999999999999775 55555555543 56999999999999999998888733
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=2.2e-18 Score=181.20 Aligned_cols=286 Identities=15% Similarity=0.159 Sum_probs=205.2
Q ss_pred HHhCCChhHHHHHHHhCccccCCCCC-CHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCc---hhHHHHHHHHHHHhc
Q 043060 206 YASRGYLDDARQLFDEMPIREENFVP-NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS---NLHVTNALIDMYSKC 281 (707)
Q Consensus 206 ~~~~g~~~~A~~l~~~m~~~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~ 281 (707)
+...|++++|+..|.++.. ..| +..++..+...+...|+++.|..+++.+.+.+..+ ...++..++..|.+.
T Consensus 45 ~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLK----VDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHhcCChHHHHHHHHHHHh----cCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 4455566666666666632 223 23345555555556666666666666555542211 124566777778888
Q ss_pred CCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHH
Q 043060 282 GDLVKARDLFESIEK---RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358 (707)
Q Consensus 282 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 358 (707)
|++++|..+|+++.+ .+..+++.++..+.+.|++++|++.++.+.+.+..++...
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 888888888887765 3556777788888888888888888888776542221100
Q ss_pred HHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 043060 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435 (707)
Q Consensus 359 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 435 (707)
....+..+...+.+.|++++|...|+++.. .+...+..++..|.+.|++++|+++|+++.+. .|+
T Consensus 179 ----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~ 246 (389)
T PRK11788 179 ----------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPE 246 (389)
T ss_pred ----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--Chh
Confidence 122345677778888888888888887642 34567888888999999999999999999874 444
Q ss_pred --HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 043060 436 --DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPDAAIWTSLLG 512 (707)
Q Consensus 436 --~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~ 512 (707)
..++..+..++...|++++|...++.+.+. .|+...+..++..|.+.|++++|.++++++ ...|+...++.++.
T Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~ 323 (389)
T PRK11788 247 YLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLD 323 (389)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 346788889999999999999999998763 466667788999999999999999999875 66799889998888
Q ss_pred HHHh---cCChhHHHHHHHHHHc
Q 043060 513 ACRV---HGRLELGESVAKHLLE 532 (707)
Q Consensus 513 ~~~~---~g~~~~A~~~~~~~~~ 532 (707)
.+.. .|+.+++..+++++++
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHH
Confidence 7765 5688899998888886
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1e-16 Score=180.85 Aligned_cols=396 Identities=11% Similarity=0.046 Sum_probs=175.6
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCC---CCCeehHHHHHHHHHhCCChhH
Q 043060 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS---LRDAVSYTALITGYASRGYLDD 214 (707)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~ 214 (707)
......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++.. ..+...+..++..+...|++++
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 33334444444444444443311 2223334444444445555555555554421 2233344444455555555555
Q ss_pred HHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 043060 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294 (707)
Q Consensus 215 A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 294 (707)
|+..+++... ..|+...+..+..++...|+.++|...++.+.+.. +.+..++..+..++.+.|..+.|++.++..
T Consensus 102 A~~~l~~~l~----~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 102 ALVKAKQLVS----GAPDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHH----hCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 5555555531 12221114444445555555555555555555542 224444455566666666666677666665
Q ss_pred CCCChh--------hHHHHHHHH-----HhcCCH---HHHHHHHHHHhhc-CCCCChh-hHHh----HHHHHhccCCchH
Q 043060 295 EKRDVI--------SWNVMIGGY-----THTSDY---KEALMLFRQMLQS-NIEPNDV-TFLS----VLPACAYLGALDL 352 (707)
Q Consensus 295 ~~~~~~--------~~~~li~~~-----~~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~~----ll~~~~~~~~~~~ 352 (707)
.. ++. ....++... ...+++ ++|++.++.+.+. ...|+.. .+.. .+.++...++.+.
T Consensus 177 ~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e 255 (765)
T PRK10049 177 NL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD 255 (765)
T ss_pred CC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 54 211 111111111 111223 5566666666543 1122211 1110 0222334455555
Q ss_pred HHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHH
Q 043060 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT-------LASWNAMISGLAMHGKADKALSLFS 425 (707)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~ 425 (707)
|+..++.+.+.+...|+. ....+...|...|++++|+..|+++...+ ...+..+..++.+.|++++|+.+++
T Consensus 256 A~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~ 334 (765)
T PRK10049 256 VISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTA 334 (765)
T ss_pred HHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 555555555544321111 11113445555555555555555442211 1223334444555555555555555
Q ss_pred HHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 043060 426 RMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK---LQHYGCMVDLLGRAGLFDEAEALLKTM-EM 500 (707)
Q Consensus 426 ~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 500 (707)
++... .|... .+. ...-.|+ ...+..+...+...|++++|++.++++ ..
T Consensus 335 ~~~~~--~P~~~~~~~------------------------~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 335 HTINN--SPPFLRLYG------------------------SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred HHhhc--CCceEeecC------------------------CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55542 11100 000 0000111 112334444555555555555555553 22
Q ss_pred CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 501 KPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 501 ~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
.|+ ...+..++..+...|++++|++.++++++++|+++..+..++..+.+.|++++|..+++.+.+.
T Consensus 389 ~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 389 APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 333 4455555555555555555555555555555555555555555555555555555555555443
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=7e-17 Score=178.94 Aligned_cols=439 Identities=12% Similarity=0.042 Sum_probs=303.8
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 043060 98 WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ 177 (707)
Q Consensus 98 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 177 (707)
+......+.+.|++++|+..|++.++. .|+...|..+..++...|++++|...+...++.. +.+...+..+...|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445667888999999999999998864 6788888888889999999999999999988774 3456688889999999
Q ss_pred CCChhHHHHHHhcCCCC---CeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHH
Q 043060 178 NGELESARLVFNKSSLR---DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254 (707)
Q Consensus 178 ~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 254 (707)
.|++++|..-|...... +......++..+........+...++.- ....|...........+ .......
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~----~~~~~~~~~~~~~~~~~----~~~~~~~ 278 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK----PENLPSVTFVGNYLQSF----RPKPRPA 278 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHc----cCCcchh
Confidence 99999998877644321 1111111221111111112233333221 22223322222222111 1111111
Q ss_pred HHHHHHHcCCCchh-HHHHHHHHHH---HhcCCHHHHHHHHHhcCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043060 255 VCSLIEGHGLGSNL-HVTNALIDMY---SKCGDLVKARDLFESIEKR------DVISWNVMIGGYTHTSDYKEALMLFRQ 324 (707)
Q Consensus 255 ~~~~~~~~g~~~~~-~~~~~li~~~---~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~ 324 (707)
-+..... ..++. ..+..+...+ ...+++++|.+.|+...+. +...|+.+...+...|++++|+..|++
T Consensus 279 ~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1111110 01110 0111111111 2346899999999887642 345788888899999999999999999
Q ss_pred HhhcCCCCC-hhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCC
Q 043060 325 MLQSNIEPN-DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKT 400 (707)
Q Consensus 325 m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~ 400 (707)
..+. .|+ ...|..+...+...|+++.|...+..+++..+. +..++..+...|...|++++|...|++.. ..+
T Consensus 357 al~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 357 SIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE--DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432 (615)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence 9875 454 456777778888999999999999999888765 78889999999999999999999999874 335
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-H-----
Q 043060 401 LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL-Q----- 473 (707)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~----- 473 (707)
...|..+...+.+.|++++|+..|++.++ ..|+ ...+..+...+...|++++|...|+...+. .|+. .
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~ 507 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNV 507 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccH
Confidence 67888899999999999999999999988 4565 458888899999999999999999998753 2321 1
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhh
Q 043060 474 --HYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549 (707)
Q Consensus 474 --~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 549 (707)
.++.....+...|++++|.+++++. ...|+ ...+..++..+...|++++|...+++++++.+.....+
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~-------- 579 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV-------- 579 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------
Confidence 1222223344579999999999985 66676 66789999999999999999999999999877543322
Q ss_pred hcCChhhHHHHHHHHhh
Q 043060 550 GAGRWDDVATIRTRLND 566 (707)
Q Consensus 550 ~~g~~~~a~~~~~~m~~ 566 (707)
....+.+|.++..+..+
T Consensus 580 ~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 580 QAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 22244456555554443
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=2.7e-17 Score=181.43 Aligned_cols=351 Identities=10% Similarity=0.017 Sum_probs=260.6
Q ss_pred hCCChhHHHHHHhcCCCC------CeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCch
Q 043060 177 QNGELESARLVFNKSSLR------DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250 (707)
Q Consensus 177 ~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~ 250 (707)
+..+++.-.-+|..-++. +..-....+..+.+.|++++|+.+++..+. ..+-+...+..++.++...|+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~---~~p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVL---TAKNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHH---hCCCchhHHHHHhhhHhhcCCHH
Confidence 445555555555544432 233445566777888888888888888742 22223334555556666788888
Q ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043060 251 LGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK---RDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327 (707)
Q Consensus 251 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (707)
.|...++.+.+.. +.+...+..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|...++.+..
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 8888888888774 44567788888888999999999999888764 3566788888889999999999999888866
Q ss_pred cCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHH
Q 043060 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASW 404 (707)
Q Consensus 328 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~ 404 (707)
.. |+.......+..+...|++++|...+..+.+..... +......+...+.+.|++++|...|++.. ..+...+
T Consensus 173 ~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~-~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~ 249 (656)
T PRK15174 173 EV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALE-RQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALR 249 (656)
T ss_pred hC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 53 322222222334677889999998888887765433 44455566778888999999999998764 3366788
Q ss_pred HHHHHHHHHcCCHHH----HHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 043060 405 NAMISGLAMHGKADK----ALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479 (707)
Q Consensus 405 ~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 479 (707)
..+...|...|++++ |+..|++..+ ..|+.. .+..+...+...|++++|...++...+. -+.+...+..+.
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La 325 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 888899999999885 7999999988 566654 7888888999999999999999998763 233556677788
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 043060 480 DLLGRAGLFDEAEALLKTM-EMKPDAAI-WTSLLGACRVHGRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 538 (707)
.+|.+.|++++|.+.++++ ...|+... +..+..++...|+.++|...++++++..|++.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999999886 45676433 44456778899999999999999999988754
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=3.8e-17 Score=180.27 Aligned_cols=354 Identities=11% Similarity=0.023 Sum_probs=282.8
Q ss_pred HhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHH
Q 043060 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286 (707)
Q Consensus 207 ~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 286 (707)
.+..+++.-.-+|..-.++...-.-+......++..+.+.|+.+.|..++..++... +.+......++......|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 445566655555555432212222234456667788889999999999999998875 3345556666677778999999
Q ss_pred HHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-hhhHHhHHHHHhccCCchHHHHHHHHHHH
Q 043060 287 ARDLFESIEK---RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN-DVTFLSVLPACAYLGALDLGKWIHAYIDK 362 (707)
Q Consensus 287 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 362 (707)
|...|+++.+ .+...|..+...+.+.|++++|+..|+++.+. .|+ ...+..+...+...|+.+.|...+..+..
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999875 35678888999999999999999999999875 454 55677788889999999999999998888
Q ss_pred hCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-h
Q 043060 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK----TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-I 437 (707)
Q Consensus 363 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ 437 (707)
..+.. ...+..+. .+...|++++|...++.+... +...+..+...+...|++++|+..|+++.+ ..|+. .
T Consensus 173 ~~P~~--~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~--~~p~~~~ 247 (656)
T PRK15174 173 EVPPR--GDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA--RGLDGAA 247 (656)
T ss_pred hCCCC--HHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHH
Confidence 77764 33444443 478899999999999986432 333455567788999999999999999998 45554 4
Q ss_pred HHHHHHHHHhccCCHHH----HHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 043060 438 TFVGVLSACNHAGLLDI----GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLL 511 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll 511 (707)
.+..+...+...|++++ |...|+.+.+ ..+.+...+..+...+.+.|++++|...+++. ...|+ ...+..+.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 77788889999999986 8999999876 23346778999999999999999999999986 55676 67888899
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCc
Q 043060 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570 (707)
Q Consensus 512 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 570 (707)
.++...|++++|...++++++.+|+++..+..++.++...|++++|...+++..+....
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 99999999999999999999999988877777899999999999999999998876553
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=7.3e-17 Score=182.01 Aligned_cols=373 Identities=13% Similarity=0.065 Sum_probs=251.4
Q ss_pred CCChhHHHHHHHHHHhCCChhHHHHHHhcCCC-C--CeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCC-CHhhHH
Q 043060 162 ESDPFVHTSLINMYAQNGELESARLVFNKSSL-R--DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVP-NESTVV 237 (707)
Q Consensus 162 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p-~~~t~~ 237 (707)
+.++....-.+......|+.++|++++.+... . +...+..+...+...|++++|.++|++.+. ..| +...+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~ 87 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALS----LEPQNDDYQR 87 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHH
Confidence 44555556667777888999999999987664 2 444588888899999999999999998743 334 345566
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCC
Q 043060 238 TVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR---DVISWNVMIGGYTHTSD 314 (707)
Q Consensus 238 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~ 314 (707)
.+...+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|+..++++.+. +...+..+...+...|.
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 77777888899999999999888773 44555 888888888999999999998887642 45566677778888888
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCH---HHHHH
Q 043060 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI---KAAEQ 391 (707)
Q Consensus 315 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~---~~A~~ 391 (707)
.++|++.++.... .|+.... +.. .. . ...+...+.......+++ ++|++
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~---l~~-------~~----~-----------~~~~r~~~~~~~~~~~r~~~ad~Al~ 217 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRD---LEA-------DA----A-----------AELVRLSFMPTRSEKERYAIADRALA 217 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHH---HHH-------HH----H-----------HHHHHhhcccccChhHHHHHHHHHHH
Confidence 8888888876653 3331000 000 00 0 000000111111122222 45555
Q ss_pred HHhcCCC---CChH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHhccCCHHHHHHHHH
Q 043060 392 VFDGMGY---KTLA-------SWNAMISGLAMHGKADKALSLFSRMIGEGLQ-PDDITFVGVLSACNHAGLLDIGRQYFN 460 (707)
Q Consensus 392 ~~~~~~~---~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~ 460 (707)
.++.+.. .++. .+...+..+...|++++|+..|+++.+.+.. |+.. ...+..++...|++++|...|+
T Consensus 218 ~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~ 296 (765)
T PRK10049 218 QYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILT 296 (765)
T ss_pred HHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHH
Confidence 5554431 1111 1111133445667888888888888775422 3322 2224667778888888888888
Q ss_pred HhHHhcCCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-------------CC---HHHHHHHHHHHHhcCChh
Q 043060 461 AMIQDYKISP--KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMK-------------PD---AAIWTSLLGACRVHGRLE 521 (707)
Q Consensus 461 ~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-------------p~---~~~~~~ll~~~~~~g~~~ 521 (707)
.+.+.....+ .......+..++...|++++|.+.++++ ... |+ ...+..+...+...|+++
T Consensus 297 ~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 297 ELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred HHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 7765311111 1344556666778888888888888776 222 23 235567778889999999
Q ss_pred HHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 522 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+|++.++++++..|.++..+..++.++...|+.++|++.+++..+..+
T Consensus 377 eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P 424 (765)
T PRK10049 377 QAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEP 424 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999999987654
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.80 E-value=8.2e-16 Score=162.01 Aligned_cols=513 Identities=13% Similarity=0.100 Sum_probs=365.5
Q ss_pred hHHHHHHHHHHHHh--CCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCCCCcchHHHHHHHH------HcCCCchHH
Q 043060 43 MQNIKQVHSQIIKT--GLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH------SLSSSPVVA 114 (707)
Q Consensus 43 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~------~~~g~~~~A 114 (707)
...+..+|..++.. ...+|+.+... ..+.++|+.+.|+..|.+..+-|+..-++++.-. .....+..+
T Consensus 180 Y~~al~yyk~al~inp~~~aD~rIgig----~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~ 255 (1018)
T KOG2002|consen 180 YRGALKYYKKALRINPACKADVRIGIG----HCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKG 255 (1018)
T ss_pred HHHHHHHHHHHHhcCcccCCCccchhh----hHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHH
Confidence 56667777775554 33456554322 3356889999999999888775554444444211 122334456
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhCCChhHHHHHHhcCC
Q 043060 115 IKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLES--DPFVHTSLINMYAQNGELESARLVFNKSS 192 (707)
Q Consensus 115 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 192 (707)
+.++...-... +-|+...+.|.+-+.-.|+++.+..+...++..-... -...|--+..+|...|++++|...|.+..
T Consensus 256 ~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 256 VQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 66665555432 4477788888888888899999999988888764211 12346678888999999999999987655
Q ss_pred CC---C-eehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCC-CHhhHHHHHHHHhccC----CchHHHHHHHHHHHcC
Q 043060 193 LR---D-AVSYTALITGYASRGYLDDARQLFDEMPIREENFVP-NESTVVTVLSACAHMG----SLELGNWVCSLIEGHG 263 (707)
Q Consensus 193 ~~---~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p-~~~t~~~ll~~~~~~g----~~~~a~~~~~~~~~~g 263 (707)
.. + +..+--|...|.+.|+.+.+...|+.... ..| +..|...+...|+..+ ..+.|..++....+.-
T Consensus 335 k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k----~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 335 KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK----QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH----hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 33 2 45566788889999999999999999852 334 4456666666666654 4566666666666653
Q ss_pred CCchhHHHHHHHHHHHhcCCH------HHHHHHHHhcC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc---CCCCC
Q 043060 264 LGSNLHVTNALIDMYSKCGDL------VKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS---NIEPN 333 (707)
Q Consensus 264 ~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~ 333 (707)
+.|...|-.+..+|-...-+ ..|..++..-. ...+...|.+...+...|++++|...|.+.... ...+|
T Consensus 411 -~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 411 -PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred -cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 55777888777777665443 33333333222 345678888999999999999999999988764 12333
Q ss_pred h-----hhH-HhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHH
Q 043060 334 D-----VTF-LSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASW 404 (707)
Q Consensus 334 ~-----~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~ 404 (707)
. .|. -.+....-..++.+.|.+++..+++..+. -+..|--|+.+.-..+...+|...+.... ..++..|
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~--YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ar 567 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG--YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNAR 567 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch--hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHH
Confidence 3 222 22333445667899999999999998776 45555555555555678889998888764 4577889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHhc------------cCCHHHHHHHHHHhHHhcCCCCC
Q 043060 405 NAMISGLAMHGKADKALSLFSRMIGEG-LQPDDITFVGVLSACNH------------AGLLDIGRQYFNAMIQDYKISPK 471 (707)
Q Consensus 405 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~p~ 471 (707)
..+...+.....+..|.+-|....+.- ..+|..+..+|.+.|.. .+..++|++.|..+.+ ..+.+
T Consensus 568 sl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN 645 (1018)
T KOG2002|consen 568 SLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKN 645 (1018)
T ss_pred HHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcch
Confidence 888888998888888888777766532 34677787778776543 3457788888888876 44557
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccC--CCCchhHHHHHHH
Q 043060 472 LQHYGCMVDLLGRAGLFDEAEALLKTME--MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE--PENPGAYVLLSNM 547 (707)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~ 547 (707)
...-+.+.-.++..|++.+|..+|.+.. ..-...+|..+...|...|++..|+++|+..++.. .+++.+...|+.+
T Consensus 646 ~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 646 MYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred hhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 7788888899999999999999999872 22346789999999999999999999999998753 4577888899999
Q ss_pred hhhcCChhhHHHHHHHHhhCCC
Q 043060 548 YAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+.+.|++.+|.+.........+
T Consensus 726 ~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 726 WYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHhhhHHHHHHHHHHHHHhCC
Confidence 9999999999998887776544
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=6.7e-15 Score=162.69 Aligned_cols=435 Identities=13% Similarity=0.063 Sum_probs=251.5
Q ss_pred cccCCCChHHHHHHHhcCCC--CCcc-hHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCccc-HHHH--HHHHhccCCh
Q 043060 73 AVSPFGDLSYALLVFETIRE--PNQV-IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYT-FPFI--LKSCAKISAI 146 (707)
Q Consensus 73 ~y~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~l--l~~~~~~~~~ 146 (707)
...+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++.. .|+... +..+ ...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 45567777777777777654 3321 12266666666677777777777665 232222 2222 3355566777
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHh--CCChhHHHHHHHhCcc
Q 043060 147 SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS--RGYLDDARQLFDEMPI 224 (707)
Q Consensus 147 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~ 224 (707)
++|.++++.+++.. +.++.++..++..|...++.++|++.++++...+......+..+|.. .++..+|++.++++..
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 77777777776664 33345555666666666666666666666654433322223333333 3344346666666632
Q ss_pred ccCCCCC-CHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHH
Q 043060 225 REENFVP-NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN 303 (707)
Q Consensus 225 ~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 303 (707)
..| +...+..+..+..+.|-...|.++...- |+.++-...... +.+.|-+..+.-..+.
T Consensus 198 ----~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~----- 257 (822)
T PRK14574 198 ----LAPTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRMAVLPT----- 257 (822)
T ss_pred ----hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhhccccc-----
Confidence 233 2333445555555555555554443331 111111000000 0111111111000000
Q ss_pred HHHHHHHhcCC---HHHHHHHHHHHhhc-CCCCCh-hhH----HhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHh
Q 043060 304 VMIGGYTHTSD---YKEALMLFRQMLQS-NIEPND-VTF----LSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374 (707)
Q Consensus 304 ~li~~~~~~g~---~~~A~~~~~~m~~~-g~~p~~-~t~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 374 (707)
-....+ .+.|+.-++.+... +..|.. .-| .-.+-++...++...+...++.+...+... ...+--
T Consensus 258 -----~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~-P~y~~~ 331 (822)
T PRK14574 258 -----RSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKM-PDYARR 331 (822)
T ss_pred -----ccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC-CHHHHH
Confidence 000111 24455555555431 222321 111 123446667777777888888777777655 455677
Q ss_pred HHhhHHHhcCCHHHHHHHHhcCCCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-------------C
Q 043060 375 SLIDMYAKCGNIKAAEQVFDGMGYK---------TLASWNAMISGLAMHGKADKALSLFSRMIGEG-------------L 432 (707)
Q Consensus 375 ~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~ 432 (707)
++.++|...+++++|..+|+.+... +......|.-+|...+++++|..+++++.+.- .
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 7888888888888888888776321 22334667788888888888888888887721 1
Q ss_pred CCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHH
Q 043060 433 QPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTS 509 (707)
Q Consensus 433 ~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ 509 (707)
.||-. .+..++..+...|++.+|++.++++.. .-+-|......+.+++...|++.+|++.++.. ...|+ ..+...
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~ 489 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERA 489 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH
Confidence 12222 234455667788888888888888865 34447778888888888888888888888765 45565 566667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCchh
Q 043060 510 LLGACRVHGRLELGESVAKHLLELEPENPGA 540 (707)
Q Consensus 510 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 540 (707)
.+.+....|++++|..+.+.+++..|+++.+
T Consensus 490 ~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 490 QAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 7778888888888888888888888887643
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1e-14 Score=153.83 Aligned_cols=479 Identities=13% Similarity=0.081 Sum_probs=343.9
Q ss_pred hHHHHHHHhcCCC--CCcchHHHHHH--HHHcCCCchHHHHHHHHHHHC--CCCCCcccHHHHHHHHhccCChHHHHHHH
Q 043060 80 LSYALLVFETIRE--PNQVIWNNIIR--GHSLSSSPVVAIKFYVRMILS--GFVPNTYTFPFILKSCAKISAISEGKQIH 153 (707)
Q Consensus 80 ~~~A~~~f~~~~~--~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 153 (707)
++.|.+.|....+ |+-+ .-.+.. .....+++..|+.+|...+.. ..+||... .+-.++.+.++.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp~Ni-l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNI-LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcch-HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 5889888888764 3322 122333 335668999999999997754 24555543 2335567899999999999
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhCC---ChhHHHHHHhcC---CCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccC
Q 043060 154 AHVLKLGLESDPFVHTSLINMYAQNG---ELESARLVFNKS---SLRDAVSYTALITGYASRGYLDDARQLFDEMPIREE 227 (707)
Q Consensus 154 ~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 227 (707)
....+... .++.++..|.-+-.... .+..+..++... ...|++..+.|..-|.-.|+++.+..+...+.....
T Consensus 223 ~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 223 ERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 99987641 22333333333222233 344555555533 244899999999999999999999999988853111
Q ss_pred CCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHH
Q 043060 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR---DVISWNV 304 (707)
Q Consensus 228 ~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ 304 (707)
.-..-...|-.+.+++-..|+++.|.+.|-...+..-..-+..+-.|..+|.+.|+++.|...|+.+.+. +..+...
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~i 381 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKI 381 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHH
Confidence 1112234588899999999999999999998887642222445567899999999999999999998753 4556666
Q ss_pred HHHHHHhcC----CHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHH----HHhCCCCCcHHHHhHH
Q 043060 305 MIGGYTHTS----DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI----DKNHQKLNNVSLWTSL 376 (707)
Q Consensus 305 li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~l 376 (707)
+...|...+ ..++|..++.+..+.- .-|...|..+...+... +.......+..+ ...+... .+.+.|.+
T Consensus 382 LG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~i-p~E~LNNv 458 (1018)
T KOG2002|consen 382 LGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQI-PPEVLNNV 458 (1018)
T ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCC-CHHHHHhH
Confidence 777777665 4577777777776643 33555666555555433 333334444433 3445554 78899999
Q ss_pred hhHHHhcCCHHHHHHHHhcCCCC-------Ch------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHH
Q 043060 377 IDMYAKCGNIKAAEQVFDGMGYK-------TL------ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGV 442 (707)
Q Consensus 377 i~~y~~~g~~~~A~~~~~~~~~~-------~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l 442 (707)
...+...|++++|...|...... |. .+--.+...+-..++++.|.+.|..... ..|+.+ .|..+
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--ehp~YId~ylRl 536 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--EHPGYIDAYLRL 536 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HCchhHHHHHHh
Confidence 99999999999999999876322 22 2233355666778899999999999998 678776 56666
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh--
Q 043060 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM----EMKPDAAIWTSLLGACRV-- 516 (707)
Q Consensus 443 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~-- 516 (707)
+...-..+...+|...++.... ....++..++.+.+.+.+...+.-|.+-|+.. ...+|..+.-+|++.|..
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 5444456788999999999877 55566777777888999988888888855543 345788888888886643
Q ss_pred ----------cCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 517 ----------HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 517 ----------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.+..++|++.|.++++.+|.|..+-+.++-+++..|+|.+|..+|.++++...
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 24578899999999999999999999999999999999999999999998765
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=1.2e-14 Score=160.86 Aligned_cols=435 Identities=10% Similarity=0.004 Sum_probs=289.1
Q ss_pred HHcCCCchHHHHHHHHHHHCCCCCCcc-cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhH
Q 043060 105 HSLSSSPVVAIKFYVRMILSGFVPNTY-TFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELES 183 (707)
Q Consensus 105 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 183 (707)
..+.|++..|++.|++..+. .|+.. ....++..+...|+.++|...++..+.. -.........+...|...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 45778888888888887765 34431 2226667777778888888877777611 11122223333556777788888
Q ss_pred HHHHHhcCCCC---CeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHH
Q 043060 184 ARLVFNKSSLR---DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE 260 (707)
Q Consensus 184 A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 260 (707)
|.++|+++... +...+..++..+.+.++.++|++.++++. ...|+...+..++..+...++..+|.+.++.+.
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~----~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA----ERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc----ccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 88888776543 45556667777777788888888888773 345555555333333333455545777777777
Q ss_pred HcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHh
Q 043060 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR-DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS 339 (707)
Q Consensus 261 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 339 (707)
+.. +.+...+..++....+.|-...|.++..+-++- +...+.- + +.+.|.+..+. +..++..
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~-l-------~~~~~a~~vr~----a~~~~~~---- 259 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQ-L-------ERDAAAEQVRM----AVLPTRS---- 259 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHH-H-------HHHHHHHHHhh----ccccccc----
Confidence 764 445666677777777777777777776654421 1111100 0 01122222211 1111100
Q ss_pred HHHHHhccCC---chHHHHHHHHHHHhCCC-CCc-HHHHh---HHhhHHHhcCCHHHHHHHHhcCCCCC----hHHHHHH
Q 043060 340 VLPACAYLGA---LDLGKWIHAYIDKNHQK-LNN-VSLWT---SLIDMYAKCGNIKAAEQVFDGMGYKT----LASWNAM 407 (707)
Q Consensus 340 ll~~~~~~~~---~~~a~~~~~~~~~~~~~-~~~-~~~~~---~li~~y~~~g~~~~A~~~~~~~~~~~----~~~~~~l 407 (707)
.... .+.+..-++.+...-.. |+. ..... -.+-++.+.|+..++++.|+.++... ..+-..+
T Consensus 260 ------~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 260 ------ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ------chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 0111 23444444444442222 211 11122 33556778999999999999997432 2355678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC-----CCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----------CCCCh
Q 043060 408 ISGLAMHGKADKALSLFSRMIGEGL-----QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK----------ISPKL 472 (707)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~~ 472 (707)
..+|...+++++|+.+|+++....- .++......|..++..++++++|..+++.+.+... -.|+.
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 8999999999999999999976431 22333457889999999999999999999976311 01222
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 043060 473 ---QHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547 (707)
Q Consensus 473 ---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 547 (707)
..+..++..+...|++.+|++.++++ ...| |...+..+...+...|++..|++.++.+..++|++..+...++..
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET 493 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence 23455678889999999999999997 4445 588999999999999999999999999999999999999999999
Q ss_pred hhhcCChhhHHHHHHHHhhCCC
Q 043060 548 YAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+...|+|++|..+.+.+.+...
T Consensus 494 al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 494 AMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHhhhhHHHHHHHHHHHHhhCC
Confidence 9999999999999988877654
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=2.1e-12 Score=124.25 Aligned_cols=302 Identities=15% Similarity=0.160 Sum_probs=185.8
Q ss_pred cchHHHHHhhccChHHHHHHHHHHHHhCCCCchhhhhhhchhhcccCCCChHH-------------------------HH
Q 043060 30 NQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSY-------------------------AL 84 (707)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~g~~~~-------------------------A~ 84 (707)
...+..+++. +.+.++--+++.|...|.+-+..+...|+++-.|-....+.- |.
T Consensus 119 E~nL~kmIS~-~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd 197 (625)
T KOG4422|consen 119 ENNLLKMISS-REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD 197 (625)
T ss_pred hhHHHHHHhh-cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH
Confidence 3344444432 237778888999988888777776666664333333222211 11
Q ss_pred HHHhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC
Q 043060 85 LVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESD 164 (707)
Q Consensus 85 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 164 (707)
-+|+..| +...++..||+++++-...+.|.++|++-.....+.+..+||.+|.+.. +..++++..+|+.....||
T Consensus 198 L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 198 LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPN 272 (625)
T ss_pred HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCc
Confidence 2233332 3445778888888888888888888888877767778888888877644 3334778888888888888
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHh
Q 043060 165 PFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244 (707)
Q Consensus 165 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~ 244 (707)
..|+|++++..++.|+++.|++.+ ++++.+| ++-|+.|...+|..++..+.
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aa---------------------------lqil~Em--KeiGVePsLsSyh~iik~f~ 323 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAA---------------------------LQILGEM--KEIGVEPSLSSYHLIIKNFK 323 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHH---------------------------HHHHHHH--HHhCCCcchhhHHHHHHHhc
Confidence 888888888888888877765443 3444444 22455555555555554444
Q ss_pred ccCCchH-HHHHHHHHHH----cCCCc----hhHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------ChhhHHH
Q 043060 245 HMGSLEL-GNWVCSLIEG----HGLGS----NLHVTNALIDMYSKCGDLVKARDLFESIEKR-----------DVISWNV 304 (707)
Q Consensus 245 ~~g~~~~-a~~~~~~~~~----~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~ 304 (707)
+.++..+ +..+...+.. ..+.| |..-+..-++.+.+..+.+-|.++-.-.... ...-|..
T Consensus 324 re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~ 403 (625)
T KOG4422|consen 324 RESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRK 403 (625)
T ss_pred ccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHH
Confidence 4444322 2222222211 11111 2223333344444444444444443332211 1223555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCC
Q 043060 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK 366 (707)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 366 (707)
+....++....+.-+.+|+.|.-.-.-|+..+...++++....+.++....++..++..|..
T Consensus 404 ~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 404 FFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 66777888888888999999988878888889888999888888888888888887776654
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=8.1e-14 Score=134.54 Aligned_cols=273 Identities=13% Similarity=0.121 Sum_probs=205.3
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhhHHHHH-----HHHHh-cCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCC
Q 043060 276 DMYSKCGDLVKARDLFESIEKRDVISWNVMI-----GGYTH-TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA 349 (707)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 349 (707)
.-|.+.|+++.|.+++.-..++|..+-.+.. --|.+ ..++..|.+.-+..+... +-+....+.--+.....|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 4578889999999888887776544332221 22233 335666766666554322 1222222222223345688
Q ss_pred chHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043060 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSR 426 (707)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 426 (707)
++.|...+...+..... -......+.-.+-+.|++++|+++|-++. ..++...-.+.+.|....+...|++++.+
T Consensus 506 ~dka~~~ykeal~ndas--c~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDAS--CTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHHHHHHHHHHcCchH--HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 99999999988887655 33344445667888999999999998763 45677777888889999999999999988
Q ss_pred HHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH
Q 043060 427 MIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPDAA 505 (707)
Q Consensus 427 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~ 505 (707)
.... ++.|+..+..|...|-+.|+-..|.+.+-.--+ =++-+.++...|..-|....-+++|+..|++. -++|+..
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 8773 444556888899999999999999988765432 34448888888999999999999999999997 5789999
Q ss_pred HHHHHHHHH-HhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCCh
Q 043060 506 IWTSLLGAC-RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554 (707)
Q Consensus 506 ~~~~ll~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 554 (707)
-|..++..| ++.|+++.|..+|+..-...|.+....-.|..++...|.-
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 999999877 5689999999999999999999999999999998888753
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=1.3e-11 Score=124.93 Aligned_cols=458 Identities=12% Similarity=0.070 Sum_probs=332.4
Q ss_pred HHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHH----HhCCCCChhHHHHHHHHHHhCCC
Q 043060 105 HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL----KLGLESDPFVHTSLINMYAQNGE 180 (707)
Q Consensus 105 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~~~~~g~ 180 (707)
|++..-|+.|..+++...+. ++.+...|.+....=-..|+.+...++.+..+ ..|+.-+...|-.=...+-+.|.
T Consensus 416 larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 34444455555555555543 44455555555544445555555555544322 23444444444444444444444
Q ss_pred hhHHHHHHhcCC-----CC-CeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCC-CHhhHHHHHHHHhccCCchHHH
Q 043060 181 LESARLVFNKSS-----LR-DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVP-NESTVVTVLSACAHMGSLELGN 253 (707)
Q Consensus 181 ~~~A~~~f~~~~-----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~ 253 (707)
.-.+..+..... +. --.+|+.-...|.+.+.++-|..+|...+ .+.| +...|......--..|..+.-.
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al----qvfp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL----QVFPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH----hhccchhHHHHHHHHHHHhcCcHHHHH
Confidence 444444443222 11 23467777777777788888888887774 2344 3444555555555667788888
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 043060 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR---DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330 (707)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 330 (707)
.++..++..- +-....|-..+.-+...|++..|+.++....+. +...|-+-+.....+.+++.|..+|.+... .
T Consensus 571 Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~ 647 (913)
T KOG0495|consen 571 ALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--I 647 (913)
T ss_pred HHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--c
Confidence 8888887762 445566777777788889999999888877643 456788888888899999999999998876 4
Q ss_pred CCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHH
Q 043060 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAM 407 (707)
Q Consensus 331 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 407 (707)
.|+...|..-+..--..+..++|.++++..++.-+. -...|-.+.+.+-+.++++.|.+.|..-.. ..+..|-.+
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~--f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllL 725 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD--FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLL 725 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc--hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHH
Confidence 577777766666666778899999999999888776 566788899999999999999998876543 355688888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcC
Q 043060 408 ISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAG 486 (707)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 486 (707)
...=-+.|..-.|..++++.+-. .| |...|...+..-.+.|+.+.|..+...+.+ ..+.+...|..-|.+..+.+
T Consensus 726 akleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcc
Confidence 88888889999999999998874 44 445788888899999999999999988887 55567788888888888888
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 487 LFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 487 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
+-..+.+.+++.. -|+.+..++...+....+++.|.+.|+++++.+|++..+|..+-..+.+.|.-++-.+++++-..
T Consensus 802 rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 802 RKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred cchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 8777777777764 35667778888888999999999999999999999999999999999999999999999988776
Q ss_pred CCCccCCcccEEeE
Q 043060 567 KGMKKVPGCSSIEV 580 (707)
Q Consensus 567 ~~~~~~~~~s~~~~ 580 (707)
... .-|..|..+
T Consensus 880 ~EP--~hG~~W~av 891 (913)
T KOG0495|consen 880 AEP--THGELWQAV 891 (913)
T ss_pred cCC--CCCcHHHHH
Confidence 543 445667654
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=6.5e-12 Score=120.97 Aligned_cols=439 Identities=13% Similarity=0.147 Sum_probs=258.6
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHH--hccCChHHH-HHHHHHHHHhCCCCChhHHHHH
Q 043060 95 QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSC--AKISAISEG-KQIHAHVLKLGLESDPFVHTSL 171 (707)
Q Consensus 95 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l 171 (707)
+++=|.|+. +..+|...++.-+|+.|...|++.+...-..|++.. ....++.-+ .+.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 345566555 445688999999999999999877776655555542 333333322 23344444444 2233333
Q ss_pred HHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchH
Q 043060 172 INMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL 251 (707)
Q Consensus 172 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~ 251 (707)
|.|++.+ ++-+...+...++..||.++++--..+.|.+++++- +....+.+..+|+.++.+-+- ..
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~--~~~k~kv~~~aFN~lI~~~S~----~~ 256 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEH--RAAKGKVYREAFNGLIGASSY----SV 256 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHH--HHhhheeeHHhhhhhhhHHHh----hc
Confidence 3455544 444555567789999999999999999999999998 447788899999999987543 33
Q ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHH----hcC----CCChhhHHHHHHHHHhcCCHHH-HHHHH
Q 043060 252 GNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFE----SIE----KRDVISWNVMIGGYTHTSDYKE-ALMLF 322 (707)
Q Consensus 252 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~ 322 (707)
++++..+|....+.||..|+|+++.+..+.|+++.|.+.+- +|+ +|...+|..+|..+++.++..+ |..++
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 48899999999999999999999999999999888766543 333 4667788888888888777644 44455
Q ss_pred HHHhh----cCCCC----ChhhHHhHHHHHhccCCchHHHHHHHHHHHhC------CCCCcHHHHhHHhhHHHhcCCHHH
Q 043060 323 RQMLQ----SNIEP----NDVTFLSVLPACAYLGALDLGKWIHAYIDKNH------QKLNNVSLWTSLIDMYAKCGNIKA 388 (707)
Q Consensus 323 ~~m~~----~g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~li~~y~~~g~~~~ 388 (707)
.+.+. +.++| |...|...+..|.+..+.+.|.+++..+.... ........|..+..+.+....++.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54433 22222 34456777778888888888888877765431 111022334455556666666666
Q ss_pred HHHHHhcCCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 043060 389 AEQVFDGMGY----KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 389 A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
-...++.|.. ++..+-..++.+..-.|.++-.-++|..|+..|..-+...-.-++...++.
T Consensus 417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~--------------- 481 (625)
T KOG4422|consen 417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD--------------- 481 (625)
T ss_pred HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC---------------
Confidence 6666666643 233444445555555666666666666666554332222222222222211
Q ss_pred hcCCCCChHHHHHHHHHHHHc-CCHHHHHH-HHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccC---CCCc
Q 043060 465 DYKISPKLQHYGCMVDLLGRA-GLFDEAEA-LLKTM-EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE---PENP 538 (707)
Q Consensus 465 ~~~~~p~~~~~~~li~~~~~~-g~~~~A~~-~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---p~~~ 538 (707)
...|+...-..+-....++ -++.++.+ ...++ ..+-.....+..+-.+.+.|..++|-+++...++.+ |..|
T Consensus 482 --k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p 559 (625)
T KOG4422|consen 482 --KLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSP 559 (625)
T ss_pred --CCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCc
Confidence 1112111111111111110 01111111 11111 111224445555555667777777777776665432 3222
Q ss_pred --hhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 539 --GAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 539 --~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.+..-+.+.-........|..+++-|...+.
T Consensus 560 ~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 560 LLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 2233444555556666667777776655444
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.61 E-value=2.6e-10 Score=115.77 Aligned_cols=421 Identities=13% Similarity=0.135 Sum_probs=339.2
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCC---CCCeehHHHHHHHHHhCCChh
Q 043060 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS---LRDAVSYTALITGYASRGYLD 213 (707)
Q Consensus 137 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~ 213 (707)
-++.....+.+.|+.++...++.- +.+.. |.-+|++...++.|.+++++.. ..+...|.+-...=-.+|+.+
T Consensus 383 WKaAVelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~ 457 (913)
T KOG0495|consen 383 WKAAVELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVD 457 (913)
T ss_pred HHHHHhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHH
Confidence 344555667777888888888762 33333 4445666777888888887554 448888988888778899988
Q ss_pred HHHHHHHhCcc--ccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCch--hHHHHHHHHHHHhcCCHHHHHH
Q 043060 214 DARQLFDEMPI--REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN--LHVTNALIDMYSKCGDLVKARD 289 (707)
Q Consensus 214 ~A~~l~~~m~~--~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~ 289 (707)
...+++++-+. ...|+..+...|..=..+|-..|..-.+..+...++..|+... ..+|+.-.+.+.+.+.++-|+.
T Consensus 458 mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carA 537 (913)
T KOG0495|consen 458 MVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARA 537 (913)
T ss_pred HHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHH
Confidence 88887765321 2378899999999989999999999999999999998887653 4688888899999999999999
Q ss_pred HHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCC
Q 043060 290 LFESIEK---RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK 366 (707)
Q Consensus 290 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 366 (707)
+|....+ .+...|...+..--..|..++-..+|++....- +-....|.......-..|++..|+.++..+.+..+.
T Consensus 538 Vya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 538 VYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 9988775 356788888887788899999999999998863 223344444455566779999999999999998877
Q ss_pred CCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHH
Q 043060 367 LNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG--YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVL 443 (707)
Q Consensus 367 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll 443 (707)
+..+|.+-+..-....+++.|..+|.+.. .+....|.--+......++.++|++++++.++ .-|+-. .|..+.
T Consensus 617 --seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 617 --SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLG 692 (913)
T ss_pred --cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHh
Confidence 78889999999999999999999999875 45666787777777888999999999999998 677766 777888
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCChh
Q 043060 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEM-KPD-AAIWTSLLGACRVHGRLE 521 (707)
Q Consensus 444 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~-~~~~~~ll~~~~~~g~~~ 521 (707)
..+.+.++++.|...|..=.+ ..+-.+..|-.|.+.=.+.|.+-.|..++++... .|+ ...|...+..-.+.|+.+
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence 889999999999998886543 3444667888888988999999999999999743 354 889999999999999999
Q ss_pred HHHHHHHHHHccCCC------------------------------CchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 522 LGESVAKHLLELEPE------------------------------NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 522 ~A~~~~~~~~~~~p~------------------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.|..+..++++--|. |+.+....+.++....+++.|++.|.+..+.+.
T Consensus 771 ~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 771 QAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 999988887764332 667778888889999999999999999988765
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.61 E-value=1.5e-11 Score=129.58 Aligned_cols=471 Identities=13% Similarity=0.070 Sum_probs=265.4
Q ss_pred CChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHH
Q 043060 78 GDLSYALLVFETIRE---PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154 (707)
Q Consensus 78 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 154 (707)
|++++|.+++.++.+ .+...|.+|...|-+.|+.++++..+-..-... +-|..-|..+..-..+.|++.+|.-.+.
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 778888888777654 355667777777877787777777664443321 3355667777777777777888888887
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCe----ehHH----HHHHHHHhCCChhHHHHHHHhCcccc
Q 043060 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA----VSYT----ALITGYASRGYLDDARQLFDEMPIRE 226 (707)
Q Consensus 155 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~----~~~~----~li~~~~~~g~~~~A~~l~~~m~~~~ 226 (707)
.+++.. +++....---...|-+.|+...|..-|.++.+.+. .-.- .++..|...++-+.|.+.++.... .
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s-~ 309 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS-K 309 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-h
Confidence 777765 44444555556677777777777766665543322 1112 234455556666777777776653 1
Q ss_pred CCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHc---------------------------CCCchhHH-HHHHHHHH
Q 043060 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH---------------------------GLGSNLHV-TNALIDMY 278 (707)
Q Consensus 227 ~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---------------------------g~~~~~~~-~~~li~~~ 278 (707)
.+-..+..+++.++..+.+....+.+.......... ++.++..+ ...+--..
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 222334445555555566666666655554444431 12223333 22222222
Q ss_pred HhcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHH
Q 043060 279 SKCGDLVKARDLFESIEK----RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGK 354 (707)
Q Consensus 279 ~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 354 (707)
.+.+...+++.-|-.... .++..|.-+..+|...|++.+|+.+|..+......-+...|..+...+...|..+.|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 334444444444332221 2445677777888888888888888888876544445667777777788888888888
Q ss_pred HHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChH------------HHHHHHHHHHHcCCHHHHHH
Q 043060 355 WIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA------------SWNAMISGLAMHGKADKALS 422 (707)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~------------~~~~li~~~~~~g~~~~A~~ 422 (707)
+.+..++...+. +..+...|...|.+.|+.++|.++++.+..+|.. .---....+.+.|+.++=+.
T Consensus 470 e~y~kvl~~~p~--~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 470 EFYEKVLILAPD--NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHhcCCC--chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 888888887766 6666777888888888888888888887554411 11222344566677666555
Q ss_pred HHHHHHHCC-----CCC-----------------CHhHHHHHHHHHhccCCHHHHHHHHH-----HhHHhcCCCCCh--H
Q 043060 423 LFSRMIGEG-----LQP-----------------DDITFVGVLSACNHAGLLDIGRQYFN-----AMIQDYKISPKL--Q 473 (707)
Q Consensus 423 ~~~~m~~~g-----~~p-----------------~~~t~~~ll~a~~~~g~~~~a~~~~~-----~~~~~~~~~p~~--~ 473 (707)
+-..|+..+ +-| ...+...++.+-.+.++......... ......++..+. .
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 444444321 111 11111222222222222111111000 000111222221 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-C----CCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHcc-----CCCCchh
Q 043060 474 HYGCMVDLLGRAGLFDEAEALLKTM-E----MKPDA---AIWTSLLGACRVHGRLELGESVAKHLLEL-----EPENPGA 540 (707)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~-~----~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~ 540 (707)
.+.-++..+.+.|++++|+.+...+ . ..++. ..-...+.++...+++..|...++.++.. +|--...
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 3445666777777777777776665 1 12221 12234455566677777777777777665 4544444
Q ss_pred HHHHHHHhhhcCC
Q 043060 541 YVLLSNMYAGAGR 553 (707)
Q Consensus 541 ~~~l~~~~~~~g~ 553 (707)
|+...+...+.|+
T Consensus 708 ~n~~~s~~~~~~q 720 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQ 720 (895)
T ss_pred HHHHHHHHHHHHH
Confidence 5544444444444
No 34
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2.3e-12 Score=126.18 Aligned_cols=421 Identities=14% Similarity=0.117 Sum_probs=250.4
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHCCCCCC-cccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHH
Q 043060 99 NNIIRGHSLSSSPVVAIKFYVRMILSGFVPN-TYTFPFILKSCAKISAISEGKQIHAHVLKLGLESD-PFVHTSLINMYA 176 (707)
Q Consensus 99 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~ 176 (707)
-...+-|.++|++++|++.|.+.++. .|| +.-|.....+|...|+++...+--...++. .|+ +..+..-.+++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHH
Confidence 34456778899999999999999875 577 667778888888999999888877777655 344 345666677777
Q ss_pred hCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhH--------HHHHHHhCcc-ccCCCCCCHhhHHHHHHHHhccC
Q 043060 177 QNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD--------ARQLFDEMPI-REENFVPNESTVVTVLSACAHMG 247 (707)
Q Consensus 177 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~--------A~~l~~~m~~-~~~~~~p~~~t~~~ll~~~~~~g 247 (707)
..|++++|+.=. |-..+..+|....-.-- |..-.++-.. +...+.|+.....+....+...-
T Consensus 195 ~lg~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 195 QLGKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred hhccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 788888775311 11222222221111111 1111111111 22445566555555544432110
Q ss_pred CchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhc-CCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043060 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC-GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML 326 (707)
Q Consensus 248 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 326 (707)
.. .+...+-..|...-..+=..|.+. ..+..|...+.+-... .... ...+..+.-+ +.|.
T Consensus 266 ~~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~------~~~~--~~~n~~d~~l---e~~A 326 (606)
T KOG0547|consen 266 KP--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLG------SESS--LSVNEIDAEL---EYMA 326 (606)
T ss_pred cc--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhh------hhhh--ccccccchhH---HHHH
Confidence 00 000000001111111111111111 0122222222111000 0000 0000000000 0000
Q ss_pred hcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHH
Q 043060 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLAS 403 (707)
Q Consensus 327 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~ 403 (707)
.+.........-.|+.-.+.+-++.+++..... ...|--+..+|....+.++-...|+... ..|..+
T Consensus 327 --------~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~--~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dv 396 (606)
T KOG0547|consen 327 --------EALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF--NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDV 396 (606)
T ss_pred --------HHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc--chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCch
Confidence 000000011223355556666666666665553 2335555666777777777777776553 335556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 043060 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482 (707)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 482 (707)
|..-...+.-.+++++|..-|++.++ +.|+.. .|..+..+..+.+.++++...|++.++ .++.-++.|+.....+
T Consensus 397 YyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiL 472 (606)
T KOG0547|consen 397 YYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEIL 472 (606)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHH
Confidence 66666667777888999999999888 777665 788888888899999999999999987 5556678888899999
Q ss_pred HHcCCHHHHHHHHHhC-CCCCC---------HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcC
Q 043060 483 GRAGLFDEAEALLKTM-EMKPD---------AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552 (707)
Q Consensus 483 ~~~g~~~~A~~~~~~~-~~~p~---------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 552 (707)
..+++++.|.+.|+.. .++|+ +.+-.+++-.- -.+++..|..+++++++++|....+|..|+.+-.+.|
T Consensus 473 tDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~ 551 (606)
T KOG0547|consen 473 TDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRG 551 (606)
T ss_pred hhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh
Confidence 9999999999999885 44443 22333333333 3489999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhh
Q 043060 553 RWDDVATIRTRLND 566 (707)
Q Consensus 553 ~~~~a~~~~~~m~~ 566 (707)
+.++|+++|++...
T Consensus 552 ~i~eAielFEksa~ 565 (606)
T KOG0547|consen 552 KIDEAIELFEKSAQ 565 (606)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999998653
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=5.7e-15 Score=146.99 Aligned_cols=255 Identities=18% Similarity=0.193 Sum_probs=110.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHH-HHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCC
Q 043060 307 GGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL-PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385 (707)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 385 (707)
..+.+.|++++|++++++......+|+...|..++ ..+...++.+.|...++.+...+.. ++..+..++.. ...++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~--~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA--NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccc-ccccc
Confidence 33444445555555543332222123333332222 2233344555555555555544443 44556666666 67888
Q ss_pred HHHHHHHHhcCC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 043060 386 IKAAEQVFDGMG--YKTLASWNAMISGLAMHGKADKALSLFSRMIGEG-LQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462 (707)
Q Consensus 386 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 462 (707)
+++|.++++..- .++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|.+.++..
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888887652 3466677788888889999999999999877633 3445567778888889999999999999998
Q ss_pred HHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchh
Q 043060 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM--EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540 (707)
Q Consensus 463 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 540 (707)
.+. .+.+......++..+...|+.+++.++++.. ....|+..|..+..++...|+.++|...++++.+..|+|+..
T Consensus 173 l~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 173 LEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred HHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 863 3335778888999999999999988888775 123456788999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 541 YVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 541 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
...+++++...|+.++|.+++++..+
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999887643
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=4.2e-11 Score=116.95 Aligned_cols=401 Identities=14% Similarity=0.146 Sum_probs=244.3
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHhcCCC---CCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCH-hhHHHHHH
Q 043060 166 FVHTSLINMYAQNGELESARLVFNKSSL---RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE-STVVTVLS 241 (707)
Q Consensus 166 ~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~-~t~~~ll~ 241 (707)
..|-.....=...+++..|+.+|++... ++...|--.+..=.++.....|..+++... .+-|.. ..|.-.+.
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAv----t~lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAV----TILPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHH----HhcchHHHHHHHHHH
Confidence 3344333444445666667777765543 355566666666677777777777777663 233322 22333333
Q ss_pred HHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHH
Q 043060 242 ACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE--KRDVISWNVMIGGYTHTSDYKEAL 319 (707)
Q Consensus 242 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~ 319 (707)
.--..|++..|.++|....+. .|+...|++.|+.-.+-..++.|..+|++.. .|++.+|--...--.+.|+..-|.
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence 444567777777777776654 6777777777777777777777777777643 566777766666666777777777
Q ss_pred HHHHHHhhcCCCCChh----hHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHH--
Q 043060 320 MLFRQMLQSNIEPNDV----TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF-- 393 (707)
Q Consensus 320 ~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~-- 393 (707)
.+|....+. -.|.. .|++...--.....++.|.-++...+..-+......+|..+...--+-|+........
T Consensus 228 ~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 228 SVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 777766553 11222 2222222223445567777777777766554323445555555444455543333322
Q ss_pred -hcC-----CC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-------HHHHHHHHH---hccCCHHH
Q 043060 394 -DGM-----GY---KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-------TFVGVLSAC---NHAGLLDI 454 (707)
Q Consensus 394 -~~~-----~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~---~~~g~~~~ 454 (707)
+++ .. -|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+=.+| ....+++.
T Consensus 306 KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 306 KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 111 11 24556777777767777777777777777764 555221 121111122 24567777
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHH----HcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043060 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLG----RAGLFDEAEALLKTM-EMKPDAAIWTSLLGACRVHGRLELGESVAKH 529 (707)
Q Consensus 455 a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 529 (707)
+.++|+...+ -++....|+.-+--+|+ |+.++..|.+++-.. |.-|...++...|..-.+.++++....+|++
T Consensus 385 tr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 385 TRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7777777765 44445566655544443 667777777777664 6667777777777777777777777777777
Q ss_pred HHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCccCCcccE
Q 043060 530 LLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577 (707)
Q Consensus 530 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 577 (707)
.++.+|.|..+|...+..-...|+++.|..+|+...++...-.|..-|
T Consensus 463 fle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 463 FLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 777777777777777777777777777777777777665544454444
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.56 E-value=8e-12 Score=131.61 Aligned_cols=327 Identities=16% Similarity=0.193 Sum_probs=188.7
Q ss_pred CCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043060 247 GSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI---EKRDVISWNVMIGGYTHTSDYKEALMLFR 323 (707)
Q Consensus 247 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 323 (707)
|+++.|..++.++++.. +.+...|..|...|-..|+.+++...+-.. ...|...|-.+..-..+.|++++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 55555555555544442 333444445555555555555444433221 22344444444444455555555555555
Q ss_pred HHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHH----hHHhhHHHhcCCHHHHHHHHhcCCC-
Q 043060 324 QMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW----TSLIDMYAKCGNIKAAEQVFDGMGY- 398 (707)
Q Consensus 324 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~li~~y~~~g~~~~A~~~~~~~~~- 398 (707)
+.++.. +++...+.--...|-+.|+...|...+.++....+.. +..-. ...+..|...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~-d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV-DIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch-hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 544432 1222222222333444455555554444444443321 21111 1123334444444555555554432
Q ss_pred -C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---------------------------CCCCHhHHHHHHHHHh
Q 043060 399 -K---TLASWNAMISGLAMHGKADKALSLFSRMIGEG---------------------------LQPDDITFVGVLSACN 447 (707)
Q Consensus 399 -~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------~~p~~~t~~~ll~a~~ 447 (707)
. +...++.++..|.+...++.|......+.... +.++... ..+.-+..
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~ 388 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLV 388 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhh
Confidence 1 22345555555556666666655555554411 2222222 12222333
Q ss_pred ccCCHHHHHHHHHHhHHhcCCC--CChHHHHHHHHHHHHcCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChhH
Q 043060 448 HAGLLDIGRQYFNAMIQDYKIS--PKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK---PDAAIWTSLLGACRVHGRLEL 522 (707)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---p~~~~~~~ll~~~~~~g~~~~ 522 (707)
+....+....+...... +... -+...|.-+.++|.+.|++.+|+++|..+-.. .+..+|--+...|...|.++.
T Consensus 389 ~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred cccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 44433333333333333 2533 35678889999999999999999999998222 247799999999999999999
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCccCCcccEE
Q 043060 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSI 578 (707)
Q Consensus 523 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 578 (707)
|.+.|++++.+.|++..+-..|+.+|.+.|+.++|.+.++.+...+.++.+++.|-
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 99999999999999999999999999999999999999999886665556677764
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=5.9e-10 Score=109.06 Aligned_cols=481 Identities=12% Similarity=0.124 Sum_probs=337.9
Q ss_pred CCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHH
Q 043060 76 PFGDLSYALLVFETIRE---PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152 (707)
Q Consensus 76 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 152 (707)
..+++..|+.+|++... ++...|-.-+..=.++.....|..+|++....=.+.|.. |--.+..=-..|++..|+++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHH
Confidence 35677889999988764 677788888888899999999999999988642222332 22333333457899999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCC--CCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCC
Q 043060 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS--LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV 230 (707)
Q Consensus 153 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~ 230 (707)
|+.-.+. .|+...|++.|++=.+...++.|+.++++.. .|++.+|--....=.++|....|..+|......-..-.
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 9987754 7999999999999999999999999999754 67889999888888899999999999988742111111
Q ss_pred CCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCch--hHHHHHHHHHHHhcCCHHHHHHH--------HHhcCCC---
Q 043060 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN--LHVTNALIDMYSKCGDLVKARDL--------FESIEKR--- 297 (707)
Q Consensus 231 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~--------~~~~~~~--- 297 (707)
.+...|++...--.+...++.|.-++...++.- +.+ ...|..+...--+-|+....... |+.+...
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 122234444444445667888888998888763 322 45666666666666765444333 2333333
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChh--h---HHhH-HH----HHhccCCchHHHHHHHHHHHhCCCC
Q 043060 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV--T---FLSV-LP----ACAYLGALDLGKWIHAYIDKNHQKL 367 (707)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t---~~~l-l~----~~~~~~~~~~a~~~~~~~~~~~~~~ 367 (707)
|-.+|--.+..--..|+.+...++|++.... ++|-.. . |..+ |+ .-....+.+.++++++..++.-+.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH- 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH- 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc-
Confidence 4557777777778889999999999999865 555321 1 1111 11 123567889999999988884332
Q ss_pred CcHHHHhHH----hhHHHhcCCHHHHHHHHhcCC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHH
Q 043060 368 NNVSLWTSL----IDMYAKCGNIKAAEQVFDGMG--YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFV 440 (707)
Q Consensus 368 ~~~~~~~~l----i~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~ 440 (707)
...++.-+ ...-.++.++..|.+++.... -|-..++...|..=.+.++++....+|++.++ ..|.. .++.
T Consensus 399 -kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~ 475 (677)
T KOG1915|consen 399 -KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWS 475 (677)
T ss_pred -ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHH
Confidence 44444444 334457889999999998764 35566777788888889999999999999998 55644 5777
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH----
Q 043060 441 GVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPDAAIWTSLLGACR---- 515 (707)
Q Consensus 441 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~---- 515 (707)
.....-...|+.+.|..+|+-++....+......|.+.|+.=...|.++.|..+++++ ...+...+|-++..--.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccc
Confidence 7777777889999999999998875333344567788888888999999999999986 44456668888776544
Q ss_pred -hcC-----------ChhHHHHHHHHHHcc----CCCCc--hhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 516 -VHG-----------RLELGESVAKHLLEL----EPENP--GAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 516 -~~g-----------~~~~A~~~~~~~~~~----~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
+.+ ++..|..+|+++... +|... .......++-...|...+...+-.+|.
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 334 567788888888753 33221 222334444555676666666666553
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.51 E-value=1.4e-11 Score=128.49 Aligned_cols=275 Identities=10% Similarity=0.072 Sum_probs=195.8
Q ss_pred cCCHHHHHHHHHhcCCC--Chh-hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHH--hHHHHHhccCCchHHHH
Q 043060 281 CGDLVKARDLFESIEKR--DVI-SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL--SVLPACAYLGALDLGKW 355 (707)
Q Consensus 281 ~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 355 (707)
.|+++.|++......+. ++. .+-.......+.|++++|.+.|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57788887777765543 222 2322334447788888888888888763 45543332 22445677788888888
Q ss_pred HHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCC---hH--------HHHHHHHHHHHcCCHHHHHHHH
Q 043060 356 IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT---LA--------SWNAMISGLAMHGKADKALSLF 424 (707)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~--------~~~~li~~~~~~g~~~~A~~~~ 424 (707)
.++.+.+..+. ++.+...+...|.+.|++++|.+++..+.+.. .. .|..++.......+.+...+++
T Consensus 175 ~l~~~~~~~P~--~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 175 GVDKLLEVAPR--HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHhcCCC--CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 88888887766 77788888889999999999998888775431 11 3333444444455566666677
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 043060 425 SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD 503 (707)
Q Consensus 425 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 503 (707)
+.+.+. .+.+......+..++...|+.++|...+++..+ .+|+.... ++......++.+++.+..++. ...|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 666442 344566778888889999999999999988765 24444322 222333558999999988886 55566
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 504 -AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 504 -~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
+..+..+...|...|++++|.+.|+++++..|++ ..+..|+.++.+.|+.++|.+++++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6678889999999999999999999999999865 6678999999999999999999887654
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=2e-12 Score=131.97 Aligned_cols=272 Identities=14% Similarity=0.144 Sum_probs=142.3
Q ss_pred CHHHHHHHHHhcCCC--Chh-hHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--CCChhhHHhHHHHHhccCCchHHHHHH
Q 043060 283 DLVKARDLFESIEKR--DVI-SWNVMIGGYTHTSDYKEALMLFRQMLQSNI--EPNDVTFLSVLPACAYLGALDLGKWIH 357 (707)
Q Consensus 283 ~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~ 357 (707)
+..+|...|..+++. |+. ....+..+|...+++++|.++|+...+... .-+...|.+++.-+-+ +.+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 455666666664432 222 233455666667777777777766665320 1133455555433321 1111111
Q ss_pred -HHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 043060 358 -AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL---ASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433 (707)
Q Consensus 358 -~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 433 (707)
+.++..... .+.+|.++.++|.-+++.+.|++.|++..+-|+ .+|+.+..-+.....+|.|...|+..+. +.
T Consensus 410 aq~Li~~~~~--sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 410 AQDLIDTDPN--SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHhhCCC--CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 222222322 455566666666666666666666665543332 3455555555555566666666665554 44
Q ss_pred CCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 043060 434 PDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTS 509 (707)
Q Consensus 434 p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 509 (707)
|... .|-.+...|.++++++.|.-.|+.+. .+.| +.....++...+.+.|+.++|+.+++++ ..+| |+..--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 4444 55555556666666666666666554 3333 3444555555566666666666666654 2232 2333333
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 510 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
.+..+...+++++|...++++.++-|++..+|..++.+|-+.|+.+.|..-|.-+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 34444555566666666666666666666666666666666666666655444443
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=6.8e-11 Score=115.42 Aligned_cols=193 Identities=13% Similarity=0.152 Sum_probs=145.1
Q ss_pred HHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHH
Q 043060 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSA 445 (707)
Q Consensus 370 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a 445 (707)
+.+...+.+-|+-.++.++|...|++..+ +....|+.|..-|...++...|++-|++.++ +.| |...|-.|.++
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQA 407 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHH
Confidence 34566677777777788888888877643 3445788888888888888888888888887 555 44588888888
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHH
Q 043060 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM--EMKPDAAIWTSLLGACRVHGRLELG 523 (707)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~A 523 (707)
|.-.+...-|+-+|++..+ --+-|...|.+|.++|.+.+++++|++-|.+. .-..+...+..|...+-+.++.++|
T Consensus 408 Yeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 8888888888888888764 33337788888888888888888888888876 2223467888888888888888888
Q ss_pred HHHHHHHHc-------cCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 524 ESVAKHLLE-------LEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 524 ~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
...+++.++ .+|+...+..-|+.-+.+.+++++|..+-.....
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 888888876 3344445556678888888888888876655443
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.7e-10 Score=115.67 Aligned_cols=257 Identities=14% Similarity=0.110 Sum_probs=210.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHH
Q 043060 302 WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381 (707)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 381 (707)
...-..-+...+++.+..+++....+.. ++....+..-|..+...|+...-..+-..+++..+. .+..|-++.--|.
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~--~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS--KALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC--CCcchhhHHHHHH
Confidence 3344456677899999999999988753 445555555666777888877777777778887776 6778999999999
Q ss_pred hcCCHHHHHHHHhcCCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHH
Q 043060 382 KCGNIKAAEQVFDGMGYKTL---ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQ 457 (707)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 457 (707)
..|+.++|++.|.+...-|. ..|-.+...|+-.|..++|+..|...-+ +-|. ..-+.-+.--|.+.++.+.|.+
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHHHHHHHHhccHHHHHH
Confidence 99999999999998765443 4899999999999999999999998877 3332 2244455667889999999999
Q ss_pred HHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC--C------CCC-CHHHHHHHHHHHHhcCChhHHHHHH
Q 043060 458 YFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM--E------MKP-DAAIWTSLLGACRVHGRLELGESVA 527 (707)
Q Consensus 458 ~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~------~~p-~~~~~~~ll~~~~~~g~~~~A~~~~ 527 (707)
+|.... ++.| |+...+-+.-+....+.+.+|...|+.. . .++ -..+|+.|+.+|++.+.+++|+..+
T Consensus 402 Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 402 FFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 999886 5666 6778888888888899999999999875 1 112 2457899999999999999999999
Q ss_pred HHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 528 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
++++.+.|.++.+|..++-+|...|+++.|++.|.+..-
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988764
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.49 E-value=2.3e-11 Score=126.70 Aligned_cols=285 Identities=13% Similarity=0.101 Sum_probs=192.9
Q ss_pred CCChhHHHHHHHhCccccCCCCCCH-hhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHH--HHHHHHHHHhcCCHH
Q 043060 209 RGYLDDARQLFDEMPIREENFVPNE-STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV--TNALIDMYSKCGDLV 285 (707)
Q Consensus 209 ~g~~~~A~~l~~~m~~~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~ 285 (707)
.|++++|.+.+..... ..++. ..|.....+..+.|+.+.+...+..+.+. .|+... .......+...|+++
T Consensus 97 eGd~~~A~k~l~~~~~----~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 97 EGDYQQVEKLMTRNAD----HAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred CCCHHHHHHHHHHHHh----cccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHH
Confidence 4677777766665421 11111 22323333445667777777777777654 344322 223466788888888
Q ss_pred HHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHH
Q 043060 286 KARDLFESIEKR---DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362 (707)
Q Consensus 286 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 362 (707)
.|...++++.+. ++.....+...|.+.|++++|.+++..+.+.+..++. .+..+
T Consensus 171 ~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l---------------------- 227 (398)
T PRK10747 171 AARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAML---------------------- 227 (398)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHH----------------------
Confidence 888888887643 5667778888888889999999888888876644221 11100
Q ss_pred hCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 043060 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439 (707)
Q Consensus 363 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 439 (707)
...+|..++.......+.+...++++..+. .++.....+..++...|+.++|.+++++..+ ..||...
T Consensus 228 ------~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l- 298 (398)
T PRK10747 228 ------EQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERL- 298 (398)
T ss_pred ------HHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHH-
Confidence 011222333333333455566666666642 4677788888888899999999999988887 3455422
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcC
Q 043060 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPDAAIWTSLLGACRVHG 518 (707)
Q Consensus 440 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g 518 (707)
.++.+....++.+++.+..+...+ ..+-|...+.++..++.+.|++++|.+.|+.. ...|+...+..|...+.+.|
T Consensus 299 -~~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g 375 (398)
T PRK10747 299 -VLLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLH 375 (398)
T ss_pred -HHHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Confidence 123344456888999999888876 34446667888899999999999999999886 67799888888999999999
Q ss_pred ChhHHHHHHHHHHccC
Q 043060 519 RLELGESVAKHLLELE 534 (707)
Q Consensus 519 ~~~~A~~~~~~~~~~~ 534 (707)
+.++|.+.+++.+.+-
T Consensus 376 ~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 376 KPEEAAAMRRDGLMLT 391 (398)
T ss_pred CHHHHHHHHHHHHhhh
Confidence 9999999999887753
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=3.1e-12 Score=130.66 Aligned_cols=244 Identities=15% Similarity=0.181 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCC-CCcHHHHhHHhhHHHhcCCHHHHHHHH
Q 043060 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK-LNNVSLWTSLIDMYAKCGNIKAAEQVF 393 (707)
Q Consensus 315 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~ 393 (707)
..+|+..|.+... .+.-+......+..+|...+++++++.+|+.+.+..+- ..+..+|++.+--+-+.=.+.---+-+
T Consensus 335 ~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 3455555555222 12223333444445555555555555555555543221 113444444433222111111111111
Q ss_pred hcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh
Q 043060 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL 472 (707)
Q Consensus 394 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 472 (707)
-.+....+.+|-++..+|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+..+. .|+
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~~ 486 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----VDP 486 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CCc
Confidence 112223444555555555555555555555555555 444 333555444445555555555555554432 333
Q ss_pred HHHHH---HHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 043060 473 QHYGC---MVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547 (707)
Q Consensus 473 ~~~~~---li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 547 (707)
.+|++ |.-.|.++++++.|+-.|+++ .+.|. .+....++..+.+.|+.|+|++++++++.++|.|+..-+..+.+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 33333 233455555555555555554 44443 33444444455555555555555555555555555555555555
Q ss_pred hhhcCChhhHHHHHHHHhh
Q 043060 548 YAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~ 566 (707)
+...+++++|...++++++
T Consensus 567 l~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHhhcchHHHHHHHHHHHH
Confidence 5555555555555555544
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.48 E-value=1e-10 Score=122.63 Aligned_cols=290 Identities=13% Similarity=0.065 Sum_probs=174.0
Q ss_pred hCCChhHHHHHHHhCccccCCCCCCHh-hHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHH
Q 043060 208 SRGYLDDARQLFDEMPIREENFVPNES-TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286 (707)
Q Consensus 208 ~~g~~~~A~~l~~~m~~~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 286 (707)
..|+++.|.+.+.+.. ...|+.. .+.....+....|+.+.+.+.+....+..-.++..+.......+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~----~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNA----DHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHh----hcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 4677888887777663 3344433 3334445566778888888888777665322222344445777788888888
Q ss_pred HHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHh
Q 043060 287 ARDLFESIEKR---DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363 (707)
Q Consensus 287 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 363 (707)
|...++.+.+. +...+..+...|.+.|++++|.+++..+.+.++.+. ..+..+-
T Consensus 172 Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~---------------------- 228 (409)
T TIGR00540 172 ARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLE---------------------- 228 (409)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHH----------------------
Confidence 88888887642 556677788888888888888888888887754322 2111100
Q ss_pred CCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHH-
Q 043060 364 HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF- 439 (707)
Q Consensus 364 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~- 439 (707)
...+..++..-......+...+.++..+. .+...+..++..+...|+.++|.+++++..+ ..||....
T Consensus 229 ------~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~ 300 (409)
T TIGR00540 229 ------QKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAIS 300 (409)
T ss_pred ------HHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccch
Confidence 01111111111122233444555555543 3777888888889999999999999999888 45555421
Q ss_pred --HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHh---CCCCCCHHHHHHHHHHH
Q 043060 440 --VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT---MEMKPDAAIWTSLLGAC 514 (707)
Q Consensus 440 --~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~p~~~~~~~ll~~~ 514 (707)
..........++.+.+.+.++...+.....|+.....++...+.+.|++++|.+.|+. ....||...+..+...+
T Consensus 301 ~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll 380 (409)
T TIGR00540 301 LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAF 380 (409)
T ss_pred hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHH
Confidence 1111122334566666666666655322222214445666666666666666666662 24456666566666666
Q ss_pred HhcCChhHHHHHHHHHHc
Q 043060 515 RVHGRLELGESVAKHLLE 532 (707)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~ 532 (707)
.+.|+.++|.+++++.+.
T Consensus 381 ~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 381 DQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666544
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.4e-10 Score=111.72 Aligned_cols=257 Identities=14% Similarity=0.161 Sum_probs=202.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCC-CCcHHHHhHHhhHHHhc
Q 043060 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK-LNNVSLWTSLIDMYAKC 383 (707)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~y~~~ 383 (707)
+..+|....+.+++++-.......|+.-....-+....+.-...++++|+.+|+.+.+..+- ..|..+|+.++-.-..+
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 34566666688888888888888887655555555555566778999999999999997543 23667777766443332
Q ss_pred CCHH-HHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHH
Q 043060 384 GNIK-AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNA 461 (707)
Q Consensus 384 g~~~-~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 461 (707)
..+. -|..+++ +.+--+.|.-.+.+-|.-.++.++|+..|++.++ +.|... .++.+..-|....+...|.+-++.
T Consensus 313 skLs~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SKLSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 2222 2333332 2222344555666777888999999999999999 777765 667777789999999999999999
Q ss_pred hHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 043060 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG 539 (707)
Q Consensus 462 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 539 (707)
+++ -.+.|-..|-.|..+|.-.+.+.-|+-.|++. ..+|+ ...|.+|+..|.+.++.++|++.|.+++..+..+..
T Consensus 390 Avd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 390 AVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred HHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 985 33347889999999999999999999999997 67775 999999999999999999999999999998877889
Q ss_pred hHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 540 AYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 540 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
++..|+++|.+.++.++|...+++-.+
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999988765
No 47
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=2.8e-11 Score=117.31 Aligned_cols=427 Identities=12% Similarity=0.081 Sum_probs=275.5
Q ss_pred cHHHHHH---HHhccCChHHHHHHHHHHHHhCCCCChhHH-HHHHHHHHhCCChhHHHHHHh----cCCCCC----eehH
Q 043060 132 TFPFILK---SCAKISAISEGKQIHAHVLKLGLESDPFVH-TSLINMYAQNGELESARLVFN----KSSLRD----AVSY 199 (707)
Q Consensus 132 t~~~ll~---~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~f~----~~~~~~----~~~~ 199 (707)
||+.|.+ -|.......+|+..++-+++...-|+.... ..+.+.|.+...+.+|.+.++ +++.-+ +...
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 4544443 344455667777777777777665554322 234455667777888877765 333221 2234
Q ss_pred HHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCC------------Cch
Q 043060 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL------------GSN 267 (707)
Q Consensus 200 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~------------~~~ 267 (707)
+.+.-.|.+.|.++.|+.-|+... ...||-.+-..|+-.+...|+-+..++.|..++..-. .|+
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m----~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCM----EEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHH----HhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 445556778888888888888763 3457766655555555667888888888887775422 223
Q ss_pred hHHHHHHH-----HHHHhcC--CHHHHH----HHHHhcCCCChh---hHH------------------HHHHHHHhcCCH
Q 043060 268 LHVTNALI-----DMYSKCG--DLVKAR----DLFESIEKRDVI---SWN------------------VMIGGYTHTSDY 315 (707)
Q Consensus 268 ~~~~~~li-----~~~~~~g--~~~~A~----~~~~~~~~~~~~---~~~------------------~li~~~~~~g~~ 315 (707)
....+.-+ .-.-+.. +.++++ ++..-+..+|-. -|. .-...|.++|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 33332222 1111111 122222 222222223211 011 112457899999
Q ss_pred HHHHHHHHHHhhcCCCCChhhHH--hHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHH
Q 043060 316 KEALMLFRQMLQSNIEPNDVTFL--SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393 (707)
Q Consensus 316 ~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 393 (707)
+.|+++++-.....-+.-+..-+ .++.......++..|.+.-...+...-. +....+.-.+.-...|++++|.+.+
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry--n~~a~~nkgn~~f~ngd~dka~~~y 513 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY--NAAALTNKGNIAFANGDLDKAAEFY 513 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc--CHHHhhcCCceeeecCcHHHHHHHH
Confidence 99999998876654322222212 2232233344667777776666554433 4444444445556689999999999
Q ss_pred hcCCCCChHHHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 043060 394 DGMGYKTLASWNAM---ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470 (707)
Q Consensus 394 ~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 470 (707)
++....|...-.+| .-.+-..|+.++|++.|-++..- +..+...+..+.+.|....+...|.+++..... -++.
T Consensus 514 keal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~ 590 (840)
T KOG2003|consen 514 KEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPN 590 (840)
T ss_pred HHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCC
Confidence 99987776544433 34577889999999999988762 334555788888999999999999999987754 5666
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKT-MEMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 548 (707)
|+...+-|.++|-+.|+-..|.+..-. ...-| +..+..-|..-|....-+++|+..|+++--+.|+-..-...++.++
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCF 670 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 889999999999999999999886544 34334 4666666777777788889999999999999996544444556667
Q ss_pred hhcCChhhHHHHHHHHhhC
Q 043060 549 AGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~ 567 (707)
.+.|++..|..+++..-.+
T Consensus 671 rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HhcccHHHHHHHHHHHHHh
Confidence 7899999999999988654
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.44 E-value=1.5e-10 Score=121.48 Aligned_cols=280 Identities=12% Similarity=0.047 Sum_probs=193.4
Q ss_pred HhcCCHHHHHHHHHhcCCC--C-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChh--hHHhHHHHHhccCCchHH
Q 043060 279 SKCGDLVKARDLFESIEKR--D-VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV--TFLSVLPACAYLGALDLG 353 (707)
Q Consensus 279 ~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a 353 (707)
...|+++.|++.+.+..+. + ...+-.....+.+.|++++|.+.|.+..+.. |+.. .-..........|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 4567788888777766542 2 2333444566677788888888888876542 4432 222235566677888888
Q ss_pred HHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCC---ChHHHH----HHHHHHHHcCCHHHHHHHHHH
Q 043060 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK---TLASWN----AMISGLAMHGKADKALSLFSR 426 (707)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~~~~~~ 426 (707)
...++.+.+..+. ++.+...+..+|...|++++|.+.+....+. +...+. ....++...+..+++.+.+.+
T Consensus 173 l~~l~~l~~~~P~--~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAPR--HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCCC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888888888766 6778888889999999999888888877533 222221 111222333444444556666
Q ss_pred HHHCCC---CCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHH-HHHHHHH--HHHcCCHHHHHHHHHhC-C
Q 043060 427 MIGEGL---QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQH-YGCMVDL--LGRAGLFDEAEALLKTM-E 499 (707)
Q Consensus 427 m~~~g~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~--~~~~g~~~~A~~~~~~~-~ 499 (707)
+.+... +.+...+..+...+...|+.++|.+.+++..+. .|+... .-.++.. ....++.+++.+.+++. .
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 655321 126678888889999999999999999999874 233321 0012222 23357788888888775 4
Q ss_pred CCCC-H--HHHHHHHHHHHhcCChhHHHHHHH--HHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 500 MKPD-A--AIWTSLLGACRVHGRLELGESVAK--HLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 500 ~~p~-~--~~~~~ll~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
..|+ + ....++...+.+.|++++|.+.++ ..++..|++ ..+..++.++.+.|+.++|.+++++...
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555 4 677899999999999999999999 577778855 5577999999999999999999987643
No 49
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.40 E-value=6.6e-09 Score=108.23 Aligned_cols=410 Identities=15% Similarity=0.054 Sum_probs=266.2
Q ss_pred hCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCC---CeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCC-Hh
Q 043060 159 LGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR---DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPN-ES 234 (707)
Q Consensus 159 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~-~~ 234 (707)
..+.-|..+|..|.-+..++|+++.+-+.|++...- ....|+.+...|...|.-..|+.++++-.. ..-.|+ ..
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~--~~~~ps~~s 394 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLK--KSEQPSDIS 394 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc--cccCCCcch
Confidence 345678889999999999999999999999977643 456799999999999999999999998742 221243 33
Q ss_pred hHHHHHHHHh-ccCCchHHHHHHHHHHHc--CC--CchhHHHHHHHHHHHhcC-----------CHHHHHHHHHhcCCC-
Q 043060 235 TVVTVLSACA-HMGSLELGNWVCSLIEGH--GL--GSNLHVTNALIDMYSKCG-----------DLVKARDLFESIEKR- 297 (707)
Q Consensus 235 t~~~ll~~~~-~~g~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~~~~~- 297 (707)
.+-..-+.|. +.+.++++..+-..+++. +. ......+..+.-+|...- ...++...+++..+.
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444454 457777777776666652 11 122344444444444321 234566666666432
Q ss_pred --ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhH
Q 043060 298 --DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375 (707)
Q Consensus 298 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 375 (707)
|+.+---+.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++..|..+.+.....-.. |-.....
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~ 552 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDG 552 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchh
Confidence 333333344456778888999999988888766667777777777777888888888888776654332 1111112
Q ss_pred HhhHHHhcCCHHHHHHHHhcCC-------------------------------CCCh-HHHHHHHHHHHHcCCHHHHHHH
Q 043060 376 LIDMYAKCGNIKAAEQVFDGMG-------------------------------YKTL-ASWNAMISGLAMHGKADKALSL 423 (707)
Q Consensus 376 li~~y~~~g~~~~A~~~~~~~~-------------------------------~~~~-~~~~~li~~~~~~g~~~~A~~~ 423 (707)
-+..-...++.++|......+. ..+. .++..+..-... +.+.+..-
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se 630 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSE 630 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhcccc
Confidence 2222223445554443322210 0011 112111111110 00000000
Q ss_pred HHHHHHCCCCCCHh--------HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 043060 424 FSRMIGEGLQPDDI--------TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495 (707)
Q Consensus 424 ~~~m~~~g~~p~~~--------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 495 (707)
.. |...-+.|+.. .+......+.+.+..++|...+.+..+ ..+-....|......+...|.+++|.+.|
T Consensus 631 ~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 631 LK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred cc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 00 11111223222 233455667888899999887777754 23335667777778899999999999988
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHhcCChhHHHH--HHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCcc
Q 043060 496 KTM-EMKPD-AAIWTSLLGACRVHGRLELGES--VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571 (707)
Q Consensus 496 ~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 571 (707)
... .+.|+ +.+..++...+.+.|+...|.. ++..+++++|.++.+|..|+.++.+.|+.++|.+.|....+..- .
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~-S 786 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE-S 786 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc-C
Confidence 875 77887 7789999999999999998888 99999999999999999999999999999999999998876543 3
Q ss_pred CCcccEE
Q 043060 572 VPGCSSI 578 (707)
Q Consensus 572 ~~~~s~~ 578 (707)
.|..+|.
T Consensus 787 ~PV~pFs 793 (799)
T KOG4162|consen 787 NPVLPFS 793 (799)
T ss_pred CCccccc
Confidence 4555554
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.39 E-value=1.5e-12 Score=129.64 Aligned_cols=250 Identities=18% Similarity=0.259 Sum_probs=91.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhc-C----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccC
Q 043060 274 LIDMYSKCGDLVKARDLFESI-E----KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348 (707)
Q Consensus 274 li~~~~~~g~~~~A~~~~~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 348 (707)
+..++.+.|++++|++++++. . ..|...|..+.......+++++|.+.++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 344455555555555555321 1 113334444444445555555555555555543321 22233333333 4555
Q ss_pred CchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC-----CCChHHHHHHHHHHHHcCCHHHHHHH
Q 043060 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG-----YKTLASWNAMISGLAMHGKADKALSL 423 (707)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~ 423 (707)
+++.|..+.....+... ++..+..++..|.+.|+++++.++++.+. ..+...|..+...+.+.|+.++|++.
T Consensus 92 ~~~~A~~~~~~~~~~~~---~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDG---DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc---ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555444333221 34445566666777777777777776632 23556777777777888888888888
Q ss_pred HHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 043060 424 FSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMK 501 (707)
Q Consensus 424 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 501 (707)
|++..+ ..|+. .....++..+...|+.+++.++++...+. .+.+...+..+..+|...|+.++|+..+++. ...
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 888887 56753 46667777778888888877777777653 2445566777888888888888888888876 334
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 043060 502 P-DAAIWTSLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 502 p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
| |+.+...+..++...|+.++|.++.+++++
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 5 477777788888888888888888777664
No 51
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.38 E-value=2.1e-09 Score=113.14 Aligned_cols=486 Identities=12% Similarity=0.081 Sum_probs=246.4
Q ss_pred HHHHHHHhCCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCCC----CcchHHHHHHHHHcCCCchHHHHHHHHHHHC
Q 043060 49 VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP----NQVIWNNIIRGHSLSSSPVVAIKFYVRMILS 124 (707)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 124 (707)
++..+...|+.|+-++|.+++ .-|+..|+.+.|- +|.-|.-+ +...++.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLi--arYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLI--ARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHH--HHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 344566789999999999999 9999999999888 88777642 3446777787777777766554
Q ss_pred CCCCCcccHHHHHHHHhccCChHH---HHHHHHHHH----HhCCC-CChh-------------HHHHHHHHHHhCCChhH
Q 043060 125 GFVPNTYTFPFILKSCAKISAISE---GKQIHAHVL----KLGLE-SDPF-------------VHTSLINMYAQNGELES 183 (707)
Q Consensus 125 g~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~----~~g~~-~~~~-------------~~~~li~~~~~~g~~~~ 183 (707)
.|-+.||..|+.+|+..||+.. .++.+..+. ..|+. +... -....+....-.|-++.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 5677788888888888887654 222222221 11211 0000 01122233333455555
Q ss_pred HHHHHhcCCC----------------------------------CCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCC
Q 043060 184 ARLVFNKSSL----------------------------------RDAVSYTALITGYASRGYLDDARQLFDEMPIREENF 229 (707)
Q Consensus 184 A~~~f~~~~~----------------------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 229 (707)
+.+++..+|. ++..++.+.+..-..+|+.+.|..++.+| ++.|+
T Consensus 158 llkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em--ke~gf 235 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM--KEKGF 235 (1088)
T ss_pred HHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH--HHcCC
Confidence 5555555542 23334444444444445555555555555 23444
Q ss_pred CCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHH
Q 043060 230 VPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309 (707)
Q Consensus 230 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 309 (707)
+.+..-|..++-+ .++...+..++.-|...|+.|+..|+.-.+.-..++|....+....+.-.--....+..+..+.
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~ 312 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGL 312 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhccc
Confidence 4444444444433 3444444444444444455555444444444333333321111110000000001111111111
Q ss_pred HhcCC-----HHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCC--CcHHHHhHHhhHHHh
Q 043060 310 THTSD-----YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL--NNVSLWTSLIDMYAK 382 (707)
Q Consensus 310 ~~~g~-----~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~y~~ 382 (707)
..+.+ ..-....+.+..-.|+.-....|.. ..-....|.-+..+++-..+..-.... .++..+..
T Consensus 313 ~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~-c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~------- 384 (1088)
T KOG4318|consen 313 LANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSM-CEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGA------- 384 (1088)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHH-HHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHH-------
Confidence 00111 0111111111111222222211111 111122344444444444332211110 01222222
Q ss_pred cCCHHHHHHHHhcCCCCChH-HHHHHHHHHHH---cCCHHHHHHHHHHHHH------------C----CCCC-------C
Q 043060 383 CGNIKAAEQVFDGMGYKTLA-SWNAMISGLAM---HGKADKALSLFSRMIG------------E----GLQP-------D 435 (707)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~~~~~m~~------------~----g~~p-------~ 435 (707)
.+.+.|.+...+... .++ ...+... ..+..+..++....+. . -..| =
T Consensus 385 -----~lrqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~i 458 (1088)
T KOG4318|consen 385 -----LLRQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLI 458 (1088)
T ss_pred -----HHHHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHH
Confidence 233444444333222 121 1111111 1112222222221100 0 0111 1
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCCHHHHHHH
Q 043060 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME-----MKPDAAIWTSL 510 (707)
Q Consensus 436 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l 510 (707)
...-+.++..|++.-+..+++..-+.... +-+ + ..|..||+.+....+.++|..+.++.. +.-|..-+..+
T Consensus 459 rdi~~ql~l~l~se~n~lK~l~~~ekye~-~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l 534 (1088)
T KOG4318|consen 459 RDIANQLHLTLNSEYNKLKILCDEEKYED-LLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSL 534 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHH
Confidence 11234556666666666666655444322 122 2 678999999999999999999999873 23456677888
Q ss_pred HHHHHhcCChhHHHHHHHHHHcc---CCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCcc
Q 043060 511 LGACRVHGRLELGESVAKHLLEL---EPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571 (707)
Q Consensus 511 l~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 571 (707)
.+...+++....+..+++++.+. .|....+...+.+.-...|+.+...++++-+...|+..
T Consensus 535 ~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 535 QDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 89999999999999999888763 24345667788888999999999999999999988864
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=7.3e-10 Score=103.54 Aligned_cols=285 Identities=14% Similarity=0.140 Sum_probs=173.8
Q ss_pred CCChhHHHHHHHhCccccCCCCC-CHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCc---hhHHHHHHHHHHHhcCCH
Q 043060 209 RGYLDDARQLFDEMPIREENFVP-NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS---NLHVTNALIDMYSKCGDL 284 (707)
Q Consensus 209 ~g~~~~A~~l~~~m~~~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~ 284 (707)
.+++++|.++|-+|.+ ..| +..+-.++-+.|.+.|..+.|..+|+.+.++.--+ -......|..=|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~----~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ----EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHh----cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 4678888888888853 222 22334567777888899999999998888753111 234556677889999999
Q ss_pred HHHHHHHHhcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHH
Q 043060 285 VKARDLFESIEKRD---VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361 (707)
Q Consensus 285 ~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 361 (707)
|.|+.+|..+.+.+ ..+...|+..|-+..+|++|++.-+++...+-++..+-
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e------------------------- 178 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE------------------------- 178 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH-------------------------
Confidence 99999999988743 34566788999999999999999888887665443322
Q ss_pred HhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhH
Q 043060 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT---LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438 (707)
Q Consensus 362 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 438 (707)
-...|.-|...+....+++.|...+.+..+.| +..--.+...+...|+++.|++.++...+.+..--..+
T Consensus 179 -------IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev 251 (389)
T COG2956 179 -------IAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV 251 (389)
T ss_pred -------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH
Confidence 11223444444444555555555555543222 22233344556666777777777777666432222235
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhc
Q 043060 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA-LLKTMEMKPDAAIWTSLLGACRVH 517 (707)
Q Consensus 439 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~-~~~~~~~~p~~~~~~~ll~~~~~~ 517 (707)
...|..+|.+.|+.+++..++..+.+. .+....-..+.+.-....-.++|.. +.+.+.-+|+...+..|+..-...
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD 328 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc
Confidence 566666777777777777777666543 2333333344444333334444444 334456677777777777655432
Q ss_pred ---CChhHHHHHHHHHHc
Q 043060 518 ---GRLELGESVAKHLLE 532 (707)
Q Consensus 518 ---g~~~~A~~~~~~~~~ 532 (707)
|...+....+..++.
T Consensus 329 aeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 329 AEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccccchhhhHHHHHHHHH
Confidence 334444445555543
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.37 E-value=1.2e-07 Score=96.72 Aligned_cols=301 Identities=13% Similarity=0.161 Sum_probs=178.4
Q ss_pred CCchHHHHHHHHHHHcCCCc------hhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hhhHHHHHHHHHhcC
Q 043060 247 GSLELGNWVCSLIEGHGLGS------NLHVTNALIDMYSKCGDLVKARDLFESIEKRD-------VISWNVMIGGYTHTS 313 (707)
Q Consensus 247 g~~~~a~~~~~~~~~~g~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g 313 (707)
|+..+-...+.++++. +.| -...|..+.+.|-..|+++.|+.+|++..+-+ ...|......=.+..
T Consensus 361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 3444455556666553 222 23468889999999999999999999987642 235666666667788
Q ss_pred CHHHHHHHHHHHhhcCCC----------C-Chh------hHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHH
Q 043060 314 DYKEALMLFRQMLQSNIE----------P-NDV------TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376 (707)
Q Consensus 314 ~~~~A~~~~~~m~~~g~~----------p-~~~------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 376 (707)
+++.|+++++.....--. | ... .|...++.--..|-++..+.+++.++...+. ++.+.-..
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria--TPqii~Ny 517 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA--TPQIIINY 517 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC--CHHHHHHH
Confidence 899999988877542111 1 111 1222333334567788888888888888776 44444445
Q ss_pred hhHHHhcCCHHHHHHHHhcCC----CCChH-HHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH--
Q 043060 377 IDMYAKCGNIKAAEQVFDGMG----YKTLA-SWNAMISGLAM---HGKADKALSLFSRMIGEGLQPDDITFVGVLSAC-- 446 (707)
Q Consensus 377 i~~y~~~g~~~~A~~~~~~~~----~~~~~-~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-- 446 (707)
...+-...-++++.+++++-. -|++. .|+..+.-+.+ ....+.|..+|++.++ |++|...-+..|+.+-
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 555566677888888888753 34443 78877666554 2358889999999988 6777766444444332
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCh--HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHH---HHHHHHHHHhcCCh
Q 043060 447 NHAGLLDIGRQYFNAMIQDYKISPKL--QHYGCMVDLLGRAGLFDEAEALLKTM-EMKPDAAI---WTSLLGACRVHGRL 520 (707)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~---~~~ll~~~~~~g~~ 520 (707)
.+-|....|..+++++.. ++.+.. ..|+..|.--...=-+..-..++++. ..-||..+ ..-....-.+.|.+
T Consensus 597 Ee~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEi 674 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEI 674 (835)
T ss_pred HHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhH
Confidence 345788888888888755 444432 34554443211111111122223322 12233222 22233344566777
Q ss_pred hHHHHHHHHHHccC-CC-CchhHHHHHHHhhhcCC
Q 043060 521 ELGESVAKHLLELE-PE-NPGAYVLLSNMYAGAGR 553 (707)
Q Consensus 521 ~~A~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~ 553 (707)
+.|..++...-++- |. ++..|...=..-.+-|+
T Consensus 675 dRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 675 DRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 77777776666643 32 34455555555556666
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=3.2e-10 Score=109.77 Aligned_cols=198 Identities=15% Similarity=0.114 Sum_probs=164.9
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 445 (707)
....+..+...|...|++++|.+.|++.. ..+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 45677888899999999999999998763 3356688888899999999999999999998842 2334577778888
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 043060 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELG 523 (707)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A 523 (707)
+...|++++|.+.++.+.+..........+..+...+...|++++|.+.+++. ...|+ ...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998764222334567777889999999999999999986 44554 67888899999999999999
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 524 ESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 524 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
...++++++..|.++..+..++.++...|+.++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998888888999999999999999999998887653
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=9.1e-09 Score=99.47 Aligned_cols=286 Identities=14% Similarity=0.142 Sum_probs=192.3
Q ss_pred CCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHH
Q 043060 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288 (707)
Q Consensus 209 ~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 288 (707)
.|++.+|.++..+-. +.+-.| ...|..-..+.-..|+.+.+-+.+.++.+..-.++..+.-+........|+++.|.
T Consensus 97 eG~~~qAEkl~~rna--e~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNA--EHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhh--hcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 577777777777652 122222 23455555666677788888888877777644666777777778888888888888
Q ss_pred HHHHhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCC
Q 043060 289 DLFESIE---KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365 (707)
Q Consensus 289 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 365 (707)
.-.++.. .+++........+|.+.|++.+...++.+|.+.|+--|+..- ++
T Consensus 174 ~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l--------- 227 (400)
T COG3071 174 ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL--------- 227 (400)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH---------
Confidence 7776654 457788888899999999999999999999888765443210 00
Q ss_pred CCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 043060 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442 (707)
Q Consensus 366 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 442 (707)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+- ..
T Consensus 228 ---e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~ 300 (400)
T COG3071 228 ---EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CR 300 (400)
T ss_pred ---HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HH
Confidence 223344444444444444444445555542 35666666777778888888888888888877666662 22
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChh
Q 043060 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPDAAIWTSLLGACRVHGRLE 521 (707)
Q Consensus 443 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~ 521 (707)
+-.+.+-++.+.-.+..+...+.++..| ..+.+|...|.+.+.+.+|.+.|+.. +..|+..+|+-+..++.+.|+.+
T Consensus 301 ~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 301 LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChH
Confidence 3345566676666666666666444444 56667777777777777777777764 66777777777777777777777
Q ss_pred HHHHHHHHHHc
Q 043060 522 LGESVAKHLLE 532 (707)
Q Consensus 522 ~A~~~~~~~~~ 532 (707)
+|.+..++.+.
T Consensus 379 ~A~~~r~e~L~ 389 (400)
T COG3071 379 EAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHH
Confidence 77777777764
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=4.9e-09 Score=103.34 Aligned_cols=412 Identities=10% Similarity=0.008 Sum_probs=247.2
Q ss_pred hcccCCCChHHHHHHHhcCCC--CC-cchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCc-ccHHHHHHHHhccCChH
Q 043060 72 CAVSPFGDLSYALLVFETIRE--PN-QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNT-YTFPFILKSCAKISAIS 147 (707)
Q Consensus 72 ~~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~ 147 (707)
+-|.+.|.+++|++.+++..+ || .+-|.....+|...|+|++..+--.+.++. .|+- -.+..-.++.-..|++.
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHH
Confidence 567789999999999999875 77 778899999999999999999988887764 4542 23444445555667776
Q ss_pred HHHHHHHHHHH-hCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCcccc
Q 043060 148 EGKQIHAHVLK-LGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226 (707)
Q Consensus 148 ~a~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 226 (707)
+|..=..-.-- .|+.. .. ...++.-..+..-..++.+-|.+-..+.. .-.+.|..|...=..+- ..
T Consensus 201 eal~D~tv~ci~~~F~n-~s-~~~~~eR~Lkk~a~~ka~e~~k~nr~p~l-PS~~fi~syf~sF~~~~----~~------ 267 (606)
T KOG0547|consen 201 EALFDVTVLCILEGFQN-AS-IEPMAERVLKKQAMKKAKEKLKENRPPVL-PSATFIASYFGSFHADP----KP------ 267 (606)
T ss_pred HHHHhhhHHHHhhhccc-ch-hHHHHHHHHHHHHHHHHHHhhcccCCCCC-CcHHHHHHHHhhccccc----cc------
Confidence 66432221111 11111 11 11111111111122333333332222222 22333333322111000 00
Q ss_pred CCCCCCHhhHHHHHHHHhcc--C---CchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---C
Q 043060 227 ENFVPNESTVVTVLSACAHM--G---SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR---D 298 (707)
Q Consensus 227 ~~~~p~~~t~~~ll~~~~~~--g---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~ 298 (707)
....+.......+..++... + .+..+.+.+.+ ....+..-... |
T Consensus 268 ~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te----------------------------~~~~~~~~~~~n~~d 319 (606)
T KOG0547|consen 268 LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATE----------------------------ECLGSESSLSVNEID 319 (606)
T ss_pred cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHH----------------------------Hhhhhhhhccccccc
Confidence 01111111222222222111 1 11111111111 11111111111 1
Q ss_pred ------hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHH
Q 043060 299 ------VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372 (707)
Q Consensus 299 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 372 (707)
..+...-..-+.-.|+...|.+.|+..+.....++.. |..+..++....+.++....|....+.++. ++.+
T Consensus 320 ~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~--n~dv 396 (606)
T KOG0547|consen 320 AELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPE--NPDV 396 (606)
T ss_pred hhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCC--CCch
Confidence 1122222223345677788888888887754433332 666677788888888888888888888877 6677
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc
Q 043060 373 WTSLIDMYAKCGNIKAAEQVFDGMGYK---TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449 (707)
Q Consensus 373 ~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 449 (707)
|..-..++.-.+++++|..=|++...- ++..|-.+..+..+.+++++++..|++.++. ++--...|+.....+..+
T Consensus 397 YyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDq 475 (606)
T KOG0547|consen 397 YYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQ 475 (606)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhH
Confidence 888888888888999999999887543 5556666767777788999999999998874 444445888888899999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC-------h--HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 043060 450 GLLDIGRQYFNAMIQDYKISPK-------L--QHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHG 518 (707)
Q Consensus 450 g~~~~a~~~~~~~~~~~~~~p~-------~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g 518 (707)
++++.|.+.|+..++ +.|+ . .+..+++-. --.+++..|.+++++. .+.|. ...+-+|...-.+.|
T Consensus 476 qqFd~A~k~YD~ai~---LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~ 551 (606)
T KOG0547|consen 476 QQFDKAVKQYDKAIE---LEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRG 551 (606)
T ss_pred HhHHHHHHHHHHHHh---hccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh
Confidence 999999999988764 2333 1 111122211 1348899999999986 77776 778999999999999
Q ss_pred ChhHHHHHHHHHHccC
Q 043060 519 RLELGESVAKHLLELE 534 (707)
Q Consensus 519 ~~~~A~~~~~~~~~~~ 534 (707)
++++|+++|++...+-
T Consensus 552 ~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 552 KIDEAIELFEKSAQLA 567 (606)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999987764
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=1.6e-09 Score=101.34 Aligned_cols=297 Identities=12% Similarity=0.133 Sum_probs=193.5
Q ss_pred CCHHHHHHHHHhcCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh------hhHHhHHHHHhccCCchH
Q 043060 282 GDLVKARDLFESIEKRDVISW---NVMIGGYTHTSDYKEALMLFRQMLQSNIEPND------VTFLSVLPACAYLGALDL 352 (707)
Q Consensus 282 g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~~~~~~~~ 352 (707)
.+.++|.++|-+|.+.|..++ -+|.+.|.+.|..|.|+++-+.+.+. ||. ...-.+..-|...|-+|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 344555555555554443332 23445555555555555555555432 221 011122233445555566
Q ss_pred HHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChH--------HHHHHHHHHHHcCCHHHHHHHH
Q 043060 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA--------SWNAMISGLAMHGKADKALSLF 424 (707)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~A~~~~ 424 (707)
|+.+|..+...+.. -......|+..|-+..+|++|+++-++..+-+.. -|-.+...+....+.+.|+.++
T Consensus 126 AE~~f~~L~de~ef--a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 126 AEDIFNQLVDEGEF--AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHhcchhh--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 66666555554333 3445667788888888888888777655332222 3445566666778999999999
Q ss_pred HHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 043060 425 SRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP 502 (707)
Q Consensus 425 ~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 502 (707)
.+..+ ..|+.+ .-..+.......|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...++.++ ...+
T Consensus 204 ~kAlq--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 204 KKALQ--ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHh--hCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 99998 556655 4445667788999999999999998774 43334567788899999999999999999886 5555
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh---hhcCChhhHHHHHHHHhhCCCccCCcccEEe
Q 043060 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY---AGAGRWDDVATIRTRLNDKGMKKVPGCSSIE 579 (707)
Q Consensus 503 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~ 579 (707)
....-..+...-....-.+.|...+.+-+...|.- ..+..|++.. +..|++.+....++.|....++..|.+.+..
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~ 359 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQN 359 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecc
Confidence 66655666666566666778888888888888854 4444555443 3356788889999999988888777776665
Q ss_pred ECCEEEEE
Q 043060 580 VGSVVHEF 587 (707)
Q Consensus 580 ~~~~~~~~ 587 (707)
.+-..|.|
T Consensus 360 CGF~a~~l 367 (389)
T COG2956 360 CGFTAHTL 367 (389)
T ss_pred cCCcceee
Confidence 55555544
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=8.5e-09 Score=103.72 Aligned_cols=278 Identities=12% Similarity=0.100 Sum_probs=219.1
Q ss_pred CCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhH
Q 043060 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV---ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSV 340 (707)
Q Consensus 264 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 340 (707)
...++.+.....+-+...+++.+..++++.+.+.|+ ..+..-|.++...|+..+-..+=.+|.+. .+-...+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 355667777778888899999999999999887654 45666788899999988888888888875 34466789999
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCH
Q 043060 341 LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKA 417 (707)
Q Consensus 341 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 417 (707)
.--|...|..++|+..+......+.. -...|-.+...|+-.|.-++|...+....+ ..-..+--+..-|.+.+..
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~--fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT--FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc--ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccH
Confidence 88888899999999999998887666 456788999999999999999888765421 1111222344567888999
Q ss_pred HHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHHhc-CC---C-CChHHHHHHHHHHHHcCCHHHH
Q 043060 418 DKALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQDY-KI---S-PKLQHYGCMVDLLGRAGLFDEA 491 (707)
Q Consensus 418 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~---~-p~~~~~~~li~~~~~~g~~~~A 491 (707)
+.|.+.|.+... +-|+. ..++-+.-...+.+.+.+|..+|+.....- .+ . -...+++.|..+|.+.+++++|
T Consensus 397 kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 397 KLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999999987 66654 467777666777899999999999876311 01 1 1345688899999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHH
Q 043060 492 EALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSN 546 (707)
Q Consensus 492 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 546 (707)
+..+++. ...| |..++.+++-.+...|+++.|...|.+++.+.|+|..+-..|..
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 9999986 4444 58899999999999999999999999999999998665555543
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=1.3e-09 Score=112.91 Aligned_cols=231 Identities=16% Similarity=0.184 Sum_probs=169.9
Q ss_pred hhHHhHHHHHhccCCchHHHHHHHHHHHh-----CCCCCcH-HHHhHHhhHHHhcCCHHHHHHHHhcCC--------CC-
Q 043060 335 VTFLSVLPACAYLGALDLGKWIHAYIDKN-----HQKLNNV-SLWTSLIDMYAKCGNIKAAEQVFDGMG--------YK- 399 (707)
Q Consensus 335 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~--------~~- 399 (707)
.|+..+...|...|+++.|...+...++. |...+.. ...+.+...|...+++++|..+|+++. ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555666777777777777777766554 2221122 223446778888999998888888762 11
Q ss_pred --ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCC-CHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcC--C
Q 043060 400 --TLASWNAMISGLAMHGKADKALSLFSRMIG-----EGLQP-DDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYK--I 468 (707)
Q Consensus 400 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p-~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~ 468 (707)
-..+++.|..+|.+.|++++|...+++..+ .|..+ ... -++.+...|...+.+++|..+++...+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 224778888889999999988888877654 12222 222 466777789999999999999987766544 2
Q ss_pred CCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcc-
Q 043060 469 SPK----LQHYGCMVDLLGRAGLFDEAEALLKTM---------EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLEL- 533 (707)
Q Consensus 469 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~- 533 (707)
.++ ..+++.|...|...|++++|.++++++ +..+. ...++.|...|.+.+++++|.++|++...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 257899999999999999999999986 12233 567888999999999999999999887753
Q ss_pred ---CCC---CchhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 534 ---EPE---NPGAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 534 ---~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
+|+ ...+|..|+.+|.+.|++++|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 444 44678899999999999999999988875
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=4.5e-08 Score=94.60 Aligned_cols=306 Identities=11% Similarity=0.038 Sum_probs=219.9
Q ss_pred CCCCCHhhHHHHHHHHhc--cCCchHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHH
Q 043060 228 NFVPNESTVVTVLSACAH--MGSLELGNWVCSLIEGH-GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304 (707)
Q Consensus 228 ~~~p~~~t~~~ll~~~~~--~g~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 304 (707)
.+.|...+...-+.+++. .++-..+.+.+-.+.+. -++.|+.....+.+.|...|+.++|+..|++...-|+.+...
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~ 268 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEA 268 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhh
Confidence 344544555555555443 34444444444444443 467788999999999999999999999999877655443332
Q ss_pred ---HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHH
Q 043060 305 ---MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381 (707)
Q Consensus 305 ---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 381 (707)
..-.+.+.|+++....+...+.... +-+...|..-....-...+++.|..+-+..++.... +...+-.-..++.
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r--~~~alilKG~lL~ 345 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR--NHEALILKGRLLI 345 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc--cchHHHhccHHHH
Confidence 2344567888888888877776532 122223333333444567778888888887777665 6666666677888
Q ss_pred hcCCHHHHHHHHhcCC--C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH-HHHh-ccCCHHHHH
Q 043060 382 KCGNIKAAEQVFDGMG--Y-KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL-SACN-HAGLLDIGR 456 (707)
Q Consensus 382 ~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~ 456 (707)
..|+.++|.-.|+... . -+..+|..++.+|...|++.+|..+-+...+. +..+..++..+. ..|. ....-++|.
T Consensus 346 ~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred hccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 8999999999998764 3 47889999999999999999999888776663 333444555442 3333 333457788
Q ss_pred HHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 043060 457 QYFNAMIQDYKISPK-LQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534 (707)
Q Consensus 457 ~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 534 (707)
.++++.. .+.|+ ....+.+...+.+.|+.++++.++++. ...||....+.|.+.++..+.+++|...|..++.++
T Consensus 425 kf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 425 KFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 8888765 45564 456677888999999999999999985 677999999999999999999999999999999999
Q ss_pred CCCchh
Q 043060 535 PENPGA 540 (707)
Q Consensus 535 p~~~~~ 540 (707)
|++..+
T Consensus 502 P~~~~s 507 (564)
T KOG1174|consen 502 PKSKRT 507 (564)
T ss_pred ccchHH
Confidence 987543
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.27 E-value=4.4e-09 Score=101.63 Aligned_cols=276 Identities=12% Similarity=0.117 Sum_probs=204.3
Q ss_pred cCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHH
Q 043060 281 CGDLVKARDLFESIEKR---DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357 (707)
Q Consensus 281 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 357 (707)
.|++..|+++..+-.+. ....|..-+.+--+.|+.+.+-.++.+..+.--.++.....+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 57888888887765432 344555556667778888888888888876432344444555556677888888888888
Q ss_pred HHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCCh-----------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 043060 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL-----------ASWNAMISGLAMHGKADKALSLFSR 426 (707)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~~ 426 (707)
..+.+.++. ++.+......+|.+.|++.....++..+.+... .+|+.++.-....+..+.-...|++
T Consensus 177 ~~ll~~~pr--~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 177 DQLLEMTPR--HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHhCcC--ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 888888877 778888899999999999999999988865422 3677777766666666666667776
Q ss_pred HHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CH
Q 043060 427 MIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DA 504 (707)
Q Consensus 427 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~ 504 (707)
...+ .+-+...-.+++.-+...|+.++|.++.....++ +..|+.. .++ ...+-++.+.-++..++- ...| ++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RLI-PRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HHH-hhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 6554 5556666777888889999999999999888775 5555521 111 223445555544444442 2223 35
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 505 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
..+.+|+..|.+++.+.+|...++.+++..| +...|..++.++.+.|+..+|.+++++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 8899999999999999999999999999998 45899999999999999999999998876
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.26 E-value=1.7e-09 Score=117.98 Aligned_cols=245 Identities=14% Similarity=0.051 Sum_probs=180.6
Q ss_pred CHHHHHHHHHHHhhcCCCCChh-hHHhHHHHHh---------ccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhc
Q 043060 314 DYKEALMLFRQMLQSNIEPNDV-TFLSVLPACA---------YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383 (707)
Q Consensus 314 ~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 383 (707)
..++|+++|++..+. .|+.. .+..+..++. ..++.+.|...++.+++..+. +...+..+..++...
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~--~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN--NPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc
Confidence 457888888888764 45433 3333333222 224478899999999888776 788888999999999
Q ss_pred CCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHH
Q 043060 384 GNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYF 459 (707)
Q Consensus 384 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 459 (707)
|++++|...|++.. ..+...|..+...+...|++++|+..+++..+ ..|+.. .+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999864 33566888999999999999999999999999 667654 3334455567789999999999
Q ss_pred HHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 043060 460 NAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 460 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 536 (707)
+++.+. ..| +...+..+..+|...|++++|...++++ +..|+ ...++.+...+...| +.|...++++++..-.
T Consensus 430 ~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 988753 234 4556777888999999999999999987 44555 455666666777777 4788888887764322
Q ss_pred CchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 537 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.+.....+...|.-.|+-+.+... +++.+.+.
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 222223367778888888888776 77776654
No 63
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.25 E-value=1.3e-07 Score=96.53 Aligned_cols=490 Identities=14% Similarity=0.148 Sum_probs=294.0
Q ss_pred hhhhhhhchhhcccCCCChHHHHHHHhcCCC-----CCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHH
Q 043060 62 QFALSKLIEICAVSPFGDLSYALLVFETIRE-----PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136 (707)
Q Consensus 62 ~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 136 (707)
+.+|-..+ .+..+.|++..-++.|++... .-...|...+.-....+-++-++.+|++.++. ++..-.--
T Consensus 102 pRIwl~Yl--q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eey 175 (835)
T KOG2047|consen 102 PRIWLDYL--QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEY 175 (835)
T ss_pred CHHHHHHH--HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHH
Confidence 34555555 677788999999999987542 23446888888888899999999999998864 33335666
Q ss_pred HHHHhccCChHHHHHHHHHHHHhC------CCCChhHHHHHHHHHHhCCC---hhHHHHHHhcCCCC--C--eehHHHHH
Q 043060 137 LKSCAKISAISEGKQIHAHVLKLG------LESDPFVHTSLINMYAQNGE---LESARLVFNKSSLR--D--AVSYTALI 203 (707)
Q Consensus 137 l~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~---~~~A~~~f~~~~~~--~--~~~~~~li 203 (707)
+.-++..+++++|.+.+..++... .+.+...|.-+.+..++.-+ --....+++.+..+ | ...|++|.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHH
Confidence 777788899999998888776432 24445566666666665432 22344556665544 3 34799999
Q ss_pred HHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCC----------------------chHHHHHHHHHHH
Q 043060 204 TGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS----------------------LELGNWVCSLIEG 261 (707)
Q Consensus 204 ~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~----------------------~~~a~~~~~~~~~ 261 (707)
.-|.+.|++++|.++|++... -.....-|..+..+|+.-.. ++....-++.+..
T Consensus 256 dYYIr~g~~ekarDvyeeai~----~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQ----TVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHH----hheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 999999999999999998743 12233345555555543211 1111222222222
Q ss_pred cCC-----------CchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC---C------ChhhHHHHHHHHHhcCCHHHHHHH
Q 043060 262 HGL-----------GSNLHVTNALIDMYSKCGDLVKARDLFESIEK---R------DVISWNVMIGGYTHTSDYKEALML 321 (707)
Q Consensus 262 ~g~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~li~~~~~~g~~~~A~~~ 321 (707)
.+. +.++..|..-+.. ..|+..+-..+|.+..+ | --..|..+..-|-.+|+.+.|..+
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 110 1112222222221 12334444444444321 1 123577777778888888888888
Q ss_pred HHHHhhcCCCCChh----hHHhHHHHHhccCCchHHHHHHHHHHHhC----------CCCC------cHHHHhHHhhHHH
Q 043060 322 FRQMLQSNIEPNDV----TFLSVLPACAYLGALDLGKWIHAYIDKNH----------QKLN------NVSLWTSLIDMYA 381 (707)
Q Consensus 322 ~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------~~~~------~~~~~~~li~~y~ 381 (707)
|++..+...+ ... +|..-...=.+..+++.|..+.+.+.... ..++ +..+|..+++.--
T Consensus 410 feka~~V~y~-~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 410 FEKATKVPYK-TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE 488 (835)
T ss_pred HHHhhcCCcc-chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH
Confidence 8877654321 111 22222222233445566666555443211 1111 3345555666666
Q ss_pred hcCCHHHHHHHHhcCCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHh---ccCCHHH
Q 043060 382 KCGNIKAAEQVFDGMGYK---TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACN---HAGLLDI 454 (707)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~---~~g~~~~ 454 (707)
..|-++....+++++.+- .+..--....-+-.+.-++++.++|++-+..=-.|+.. .|+..+.-+. ....++.
T Consensus 489 s~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 677777777777766432 22211122223445666888888888776653345554 4555544433 3457999
Q ss_pred HHHHHHHhHHhcCCCCChHH--HHHHHHHHHHcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChhHHHHHHH
Q 043060 455 GRQYFNAMIQDYKISPKLQH--YGCMVDLLGRAGLFDEAEALLKTM--EMKPD--AAIWTSLLGACRVHGRLELGESVAK 528 (707)
Q Consensus 455 a~~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~ 528 (707)
|+.+|+...+ +.+|...- |-.....=-+-|....|++++++. .+++. ...||..|.--...=-+..-..+|+
T Consensus 569 aRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYe 646 (835)
T KOG2047|consen 569 ARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYE 646 (835)
T ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Confidence 9999999987 66664322 222222233568889999999997 34443 5678888865444333566778999
Q ss_pred HHHccCCCCc--hhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 529 HLLELEPENP--GAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 529 ~~~~~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
++++.-|++. ......+++-.+.|..+.|+.++..-.+
T Consensus 647 kaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 647 KAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 9999877543 3455678889999999999999876554
No 64
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.25 E-value=4e-09 Score=111.01 Aligned_cols=486 Identities=13% Similarity=0.097 Sum_probs=290.6
Q ss_pred CCCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 043060 92 EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSL 171 (707)
Q Consensus 92 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 171 (707)
.||-++|..+|.-|+..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.++ .|.+.+|+.|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 478899999999999999999888 8888888777788888999998888888887776 6778899999
Q ss_pred HHHHHhCCChhH---HHHHHhcCCC---------------------C-CeehHHHHHHHHHhCCChhHHHHHHHhCcccc
Q 043060 172 INMYAQNGELES---ARLVFNKSSL---------------------R-DAVSYTALITGYASRGYLDDARQLFDEMPIRE 226 (707)
Q Consensus 172 i~~~~~~g~~~~---A~~~f~~~~~---------------------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 226 (707)
...|...||+.. .++.+..+.. | ....-...+.-..-.|-++.+++++..|+..
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs- 168 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS- 168 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc-
Confidence 999999998654 2331211110 0 0111223444555667788888888777531
Q ss_pred CCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC----hhhH
Q 043060 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD----VISW 302 (707)
Q Consensus 227 ~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~ 302 (707)
....|..+ +++-+... ..-.+++.....+.--.++..++.++++.-.-.|+++.|..++..|.++. ..-|
T Consensus 169 a~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 169 AWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred cccchHHH----HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 22222222 35544433 23344455444443226899999999999999999999999999998763 2223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHh
Q 043060 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382 (707)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~ 382 (707)
-.++-+ .+....+..+++-|.+.|+.|+..|+..-+..+...|....+...... .... ...++..+..+...
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~----~hg~-tAavrsaa~rg~~a 314 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQL----AHGF-TAAVRSAACRGLLA 314 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccch----hhhh-hHHHHHHHhcccHh
Confidence 334433 788888899999999999999999998888888776553322221110 0000 22233333333111
Q ss_pred cCCHHHH--HHHHhcCC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHh-HHHHHHHHHhccC
Q 043060 383 CGNIKAA--EQVFDGMG-------YKTLASWNAMISGLAMHGKADKALSLFSRMIGE--GLQPDDI-TFVGVLSACNHAG 450 (707)
Q Consensus 383 ~g~~~~A--~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~-t~~~ll~a~~~~g 450 (707)
..+++.- .-+....+ .....+|...+. ...+|+.++..++-..|..- ...++.+ .|..++.-|.+.-
T Consensus 315 ~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~ 393 (1088)
T KOG4318|consen 315 NKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRI 393 (1088)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHH
Confidence 1122111 11111111 112244544333 34478999999998888653 2344443 5555555444321
Q ss_pred CH---------HHHHHH----------HHHhHHhcCCCCCh----------------------------HHHHHHHHHHH
Q 043060 451 LL---------DIGRQY----------FNAMIQDYKISPKL----------------------------QHYGCMVDLLG 483 (707)
Q Consensus 451 ~~---------~~a~~~----------~~~~~~~~~~~p~~----------------------------~~~~~li~~~~ 483 (707)
.. ..+.+. -+.+ . ...|+. ..-+.++..+.
T Consensus 394 e~~~~~~i~~~~qgls~~l~se~tp~vsell-~--~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~ 470 (1088)
T KOG4318|consen 394 ERHICSRIYYAGQGLSLNLNSEDTPRVSELL-E--NLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLN 470 (1088)
T ss_pred HhhHHHHHHHHHHHHHhhhchhhhHHHHHHH-H--HhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHH
Confidence 10 011110 0000 0 011111 11233444455
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCC---CCchhHHHHHHHhhhcCChhhHHHH
Q 043060 484 RAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEP---ENPGAYVLLSNMYAGAGRWDDVATI 560 (707)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~ 560 (707)
+.-+..+++...++....-=...|..|+.-+..+.+.+.|....++....+. -+..-+..+.+.+.+.+...++.++
T Consensus 471 se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~ti 550 (1088)
T KOG4318|consen 471 SEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTI 550 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHH
Confidence 5555555554443331111136788999999999999999999988876543 2446788999999999999999999
Q ss_pred HHHHhhCCCccCCcccEEeECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCcc
Q 043060 561 RTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVP 618 (707)
Q Consensus 561 ~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p 618 (707)
.+++.+.-. ..|-+-. .++.+..+...-++. +.+.++.+.+...|+.-
T Consensus 551 L~e~ks~a~-n~~~~a~-----~~f~~lns~a~agqq----e~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 551 LYEDKSSAE-NEPLVAI-----ILFPLLNSGAPAGQQ----EKLKKLADILVSLGLSE 598 (1088)
T ss_pred HhhhhHHhh-CCchHHH-----HHHHHHhhhhhccCH----HHHHHHHHHHHHhhhhh
Confidence 999987322 2221100 011112222222332 34777888888888776
No 65
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=1.4e-11 Score=85.77 Aligned_cols=50 Identities=26% Similarity=0.523 Sum_probs=46.6
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhc
Q 043060 93 PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142 (707)
Q Consensus 93 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 142 (707)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 66
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=3.2e-07 Score=93.06 Aligned_cols=434 Identities=12% Similarity=0.132 Sum_probs=246.3
Q ss_pred HHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH--HHHHH--Hh
Q 043060 102 IRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTS--LINMY--AQ 177 (707)
Q Consensus 102 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~--~~ 177 (707)
++-+..+|++++|+....+++..+ +-|...+..-+-+..+.+.+++|..+.+. .+ -..+++. +=.+| .+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHHH
Confidence 344556667777777777776543 33444555555666667777777643332 11 0111111 12333 35
Q ss_pred CCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCC-CHhhHHHHHHHHhccCCchHHHHHH
Q 043060 178 NGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVP-NESTVVTVLSACAHMGSLELGNWVC 256 (707)
Q Consensus 178 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~ 256 (707)
.+..|+|...++.....|..+...-...+.+.|++++|+++|+.+.. .+..- |...-..++.+-... .+.
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k--n~~dd~d~~~r~nl~a~~a~l----~~~--- 162 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAK--NNSDDQDEERRANLLAVAAAL----QVQ--- 162 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHhh----hHH---
Confidence 67778887777755444544555556677778888888888887742 22111 111112222211110 010
Q ss_pred HHHHHcCCCc--hhHHHHHHHHHHHhcCCHHHHHHHHHhc--------CCCCh----------hhHHHHHHHHHhcCCHH
Q 043060 257 SLIEGHGLGS--NLHVTNALIDMYSKCGDLVKARDLFESI--------EKRDV----------ISWNVMIGGYTHTSDYK 316 (707)
Q Consensus 257 ~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~----------~~~~~li~~~~~~g~~~ 316 (707)
.+......| +-..+-.....+...|++.+|+++++.. .+.|. ..---|...+...|+-+
T Consensus 163 -~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 -LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred -HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 111111122 1222233445667778888888888776 21111 11223456677889999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHhH---HHHHhccCCchH--------------HHHHHHHHHHhCCCCCcHHHHhHHhhH
Q 043060 317 EALMLFRQMLQSNIEPNDVTFLSV---LPACAYLGALDL--------------GKWIHAYIDKNHQKLNNVSLWTSLIDM 379 (707)
Q Consensus 317 ~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~--------------a~~~~~~~~~~~~~~~~~~~~~~li~~ 379 (707)
+|.+++...+... .+|....... |.+.....++-. +......+...... ....-+.++.+
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~--~i~~N~~lL~l 318 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQ--AIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 9999999988765 3444322221 122222222111 11111111111111 22233455555
Q ss_pred HHhcCCHHHHHHHHhcCCCCC-hHHHHHHHHHH--HHcCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHhccCCHHH
Q 043060 380 YAKCGNIKAAEQVFDGMGYKT-LASWNAMISGL--AMHGKADKALSLFSRMIGEGLQPDD--ITFVGVLSACNHAGLLDI 454 (707)
Q Consensus 380 y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 454 (707)
|. +..+.+.++-...+... ...+..++... .+.....+|.+++...-+. .|.. ......+.....+|+++.
T Consensus 319 ~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 319 FT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred Hh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHH
Confidence 54 55677777777776543 33444444332 2233578888888887763 4544 355556667788999999
Q ss_pred HHHHHH--------HhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhc
Q 043060 455 GRQYFN--------AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM--------EMKPD-AAIWTSLLGACRVH 517 (707)
Q Consensus 455 a~~~~~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~ 517 (707)
|.+++. .+.+ .+. .+.+..+++.+|.+.++-+.|..++.+. ..++. ..+|.-+...-.++
T Consensus 395 A~~il~~~~~~~~ss~~~-~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILE-AKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHhhhhhhhhhh-hcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 999998 4432 133 3445667888899988877777776654 22233 34555555566778
Q ss_pred CChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHH
Q 043060 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563 (707)
Q Consensus 518 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 563 (707)
|+-++|...++++++.+|++..+...+..+|++. +.+.|..+-+.
T Consensus 472 G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred CchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 9999999999999999999999999999999876 45566655433
No 67
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=6.5e-11 Score=82.33 Aligned_cols=50 Identities=30% Similarity=0.556 Sum_probs=46.3
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 043060 399 KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448 (707)
Q Consensus 399 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 448 (707)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=3.1e-09 Score=115.93 Aligned_cols=210 Identities=13% Similarity=0.026 Sum_probs=167.2
Q ss_pred CchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHh---------cCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCC
Q 043060 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK---------CGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGK 416 (707)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~---------~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 416 (707)
+.+.|...++..++..+. +...+..+..+|.. .+++++|...+++.. ..+...|..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~--~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN--SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 457889999999988776 66677777665542 345889999998874 3467789999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHHcCCHHHHHHH
Q 043060 417 ADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL-QHYGCMVDLLGRAGLFDEAEAL 494 (707)
Q Consensus 417 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~ 494 (707)
+++|+..|++..+ ..|+.. .+..+..++...|++++|...++.+.+ ..|+. ..+..+...+...|++++|++.
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 667755 677888899999999999999999875 34432 3333445567778999999999
Q ss_pred HHhC-CC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 495 LKTM-EM-KPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 495 ~~~~-~~-~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
+++. .. .|+ +..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 9886 22 354 5567778888899999999999999998888888888888888888888 4888877777653
No 69
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.17 E-value=1e-08 Score=99.22 Aligned_cols=196 Identities=18% Similarity=0.203 Sum_probs=111.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhh
Q 043060 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378 (707)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 378 (707)
...+..+...|...|++++|.+.+++..+.. |+ +...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~-----------------------------------~~~~~~~la~ 73 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PD-----------------------------------DYLAYLALAL 73 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc-----------------------------------cHHHHHHHHH
Confidence 3456667777777777777777777776542 22 2333444445
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHHH
Q 043060 379 MYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLDI 454 (707)
Q Consensus 379 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 454 (707)
.|...|++++|.+.|++.. ..+...+..+...+...|++++|++.|++.......|. ...+..+...+...|++++
T Consensus 74 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 74 YYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHH
Confidence 5555555555555554432 22334455555555666666666666666655322222 2244445556666666666
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 043060 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 455 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
|...++...+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..++..+...|+.+.|....+.+.+
T Consensus 154 A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 154 AEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 66666666542 2223455666666677777777777766664 2223 345555666666667777777776666554
Q ss_pred c
Q 043060 533 L 533 (707)
Q Consensus 533 ~ 533 (707)
.
T Consensus 232 ~ 232 (234)
T TIGR02521 232 L 232 (234)
T ss_pred h
Confidence 4
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=4.6e-09 Score=104.73 Aligned_cols=191 Identities=18% Similarity=0.149 Sum_probs=125.3
Q ss_pred HHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHH
Q 043060 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSA 445 (707)
Q Consensus 370 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a 445 (707)
...+..+...|.+.|+.++|...|++.. ..+...|+.+...+...|++++|+..|++..+ +.|+.. ++..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 4456677777778888888888777653 33566788888888888888888888888887 566543 66777777
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHH
Q 043060 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM--EMKPDAAIWTSLLGACRVHGRLELG 523 (707)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~A 523 (707)
+...|++++|.+.|+...+. .|+..........+...+++++|.+.|++. ...|+...| .......|+...+
T Consensus 142 l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~---~~~~~~lg~~~~~ 215 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW---NIVEFYLGKISEE 215 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH---HHHHHHccCCCHH
Confidence 77888888888888877653 343322222222344567788888888653 222332222 2223335555443
Q ss_pred HHHHHHHH-------ccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 524 ESVAKHLL-------ELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 524 ~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+.++.+. ++.|+.+.+|..++.+|.+.|++++|+..|++..+.++
T Consensus 216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2333333 34556667888888888888888888888888877554
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=8.3e-07 Score=84.30 Aligned_cols=192 Identities=17% Similarity=0.118 Sum_probs=102.2
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHCCCCCCHh-HHHHHHH
Q 043060 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGK-------ADKALSLFSRMIGEGLQPDDI-TFVGVLS 444 (707)
Q Consensus 373 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-t~~~ll~ 444 (707)
.-.|+--|.+.+++++|..+.++.....+.-|-.-...++.+|+ ..-|.+.|+-.-+++..-|.+ --.++.+
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 34456667777777777777777655444333222222333332 233444444333333333332 2233444
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHH-HHhcCChh
Q 043060 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME-MK-PDAAIWTSLLGA-CRVHGRLE 521 (707)
Q Consensus 445 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~-~~~~g~~~ 521 (707)
++.-..++++.+-+++.+.. |-...|...+| +..+++..|.+.+|+++|-++. .+ .|..+|.+++.- |.+.++.+
T Consensus 368 ~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIES-YFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCch
Confidence 44555566777777776643 33444444443 5667777777777777776652 11 245556555543 34556666
Q ss_pred HHHHHHHHHHccC-CCC-chhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 522 LGESVAKHLLELE-PEN-PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 522 ~A~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.|..+ +++.+ |.+ ......+++-|.+++.+--|.+.|+.+...++
T Consensus 446 lAW~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 446 LAWDM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHHH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 65444 33333 222 22334556667777777777777777766554
No 72
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=1.3e-07 Score=89.53 Aligned_cols=431 Identities=11% Similarity=0.058 Sum_probs=240.3
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHH-HHHHHHHhCC
Q 043060 101 IIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHT-SLINMYAQNG 179 (707)
Q Consensus 101 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g 179 (707)
+...+...|++++|+..|..+.+.. .|+......+.-+.--.|.+.+|+++-.. .|+....+ .|...-.+.+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~k------a~k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEK------APKTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHHhC
Confidence 3456677888888888888777644 44455554444444456777777776554 23333444 3444455566
Q ss_pred ChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHH-HhccCCchHHHHHHHH
Q 043060 180 ELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSA-CAHMGSLELGNWVCSL 258 (707)
Q Consensus 180 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~ 258 (707)
+-++-..+-+.+... ..---+|.+.....-.+.+|++++.+.+. -.|+-...+.-+.. |.+..-++-+.+++.-
T Consensus 136 dEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~----dn~ey~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQ----DNPEYIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred cHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHh----cChhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 655555544444322 11122333333444567888888888753 23455555544443 4566666767777776
Q ss_pred HHHcCCCchhHHHHHHHHHHHhc--CCHHHHH--HHHHhcCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHhhcC
Q 043060 259 IEGHGLGSNLHVTNALIDMYSKC--GDLVKAR--DLFESIEKRDVISWNVMIGGYTHT-----SDYKEALMLFRQMLQSN 329 (707)
Q Consensus 259 ~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~--~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g 329 (707)
.++. ++.++...|..+.-..+. |+..+++ .+-+...+. | ..+.-+++. .+.+.|++++-.+...
T Consensus 211 YL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~- 283 (557)
T KOG3785|consen 211 YLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH- 283 (557)
T ss_pred HHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh-
Confidence 6654 344445555554444443 3322221 111111111 1 111222221 2345566665555432
Q ss_pred CCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhH-----HhhHHHhcCCHHHHHHHHhcCCCC-----
Q 043060 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS-----LIDMYAKCGNIKAAEQVFDGMGYK----- 399 (707)
Q Consensus 330 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----li~~y~~~g~~~~A~~~~~~~~~~----- 399 (707)
-|... ..++--+.+.+++.+|..+ +....+..|...+... +..-......+.-|.+.|+-....
T Consensus 284 -IPEAR--lNL~iYyL~q~dVqeA~~L---~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecD 357 (557)
T KOG3785|consen 284 -IPEAR--LNLIIYYLNQNDVQEAISL---CKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECD 357 (557)
T ss_pred -ChHhh--hhheeeecccccHHHHHHH---HhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccc
Confidence 22221 1222234455555544433 3333333222222222 222222333466677777655432
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH-HHH
Q 043060 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY-GCM 478 (707)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l 478 (707)
.+.--.+|.+.+.-..++++.+-.+.....-- ..|...-..+..+.+..|++.+|.++|-.+... .++ +..+| ..|
T Consensus 358 TIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~L 434 (557)
T KOG3785|consen 358 TIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSML 434 (557)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHH
Confidence 23345677777777788889888888887753 333333345778999999999999999877431 222 34455 456
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhH
Q 043060 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTS-LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557 (707)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~-ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 557 (707)
..+|.+.++++-|.+++-++....+..+... +..-|.+.+.+--|-+.|+.+-.++|. |..|. |+-...
T Consensus 435 ArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnWe---------GKRGAC 504 (557)
T KOG3785|consen 435 ARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT-PENWE---------GKRGAC 504 (557)
T ss_pred HHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-ccccC---------CccchH
Confidence 6889999999999999998865445554444 456799999999999999998888883 34332 333334
Q ss_pred HHHHHHHhhCCC
Q 043060 558 ATIRTRLNDKGM 569 (707)
Q Consensus 558 ~~~~~~m~~~~~ 569 (707)
.-+|..+....-
T Consensus 505 aG~f~~l~~~~~ 516 (557)
T KOG3785|consen 505 AGLFRQLANHKT 516 (557)
T ss_pred HHHHHHHHcCCC
Confidence 455665554433
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.14 E-value=5.3e-08 Score=101.22 Aligned_cols=233 Identities=18% Similarity=0.238 Sum_probs=159.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCC----------Chh-hHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCCC
Q 043060 268 LHVTNALIDMYSKCGDLVKARDLFESIEKR----------DVI-SWNVMIGGYTHTSDYKEALMLFRQMLQSN---IEPN 333 (707)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~ 333 (707)
..+...|..+|...|+++.|+.+|+...+. .+. ..+.+...|...+++++|..+|+++...- .-++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445555777777777777777777665432 111 23446678888899999999988886521 1111
Q ss_pred hhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC----------CCChH-
Q 043060 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG----------YKTLA- 402 (707)
Q Consensus 334 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----------~~~~~- 402 (707)
... -..+++.|..+|.+.|++++|...+++.. .+.+.
T Consensus 279 h~~--------------------------------va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 279 HPA--------------------------------VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred CHH--------------------------------HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 111 23345556666677777666666555431 11222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH----hHHHHHHHHHhccCCHHHHHHHHHHhHHhc----C-CCC
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGE---GLQPDD----ITFVGVLSACNHAGLLDIGRQYFNAMIQDY----K-ISP 470 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~p 470 (707)
.++.++..+...+++++|..++++..+. -..++. -+++.|...|.+.|++++|.++|++++... + ..+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 4566677778888888888888766542 123333 278888889999999999999998877652 1 122
Q ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 043060 471 -KLQHYGCMVDLLGRAGLFDEAEALLKTM--------EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 471 -~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
....++.|...|.+.++.++|.++|.+. +..|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2356778888899999999998888874 34466 67899999999999999999999998874
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=3e-09 Score=99.45 Aligned_cols=226 Identities=14% Similarity=0.096 Sum_probs=148.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHh
Q 043060 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382 (707)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~ 382 (707)
+.|..+|.+.|.+.+|.+.|+..++. .|-..|| -.|...|.+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTf------------------------------------llLskvY~r 268 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTF------------------------------------LLLSKVYQR 268 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHH------------------------------------HHHHHHHHH
Confidence 45666777777777777777666554 2333344 444455555
Q ss_pred cCCHHHHHHHHhcCCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHH
Q 043060 383 CGNIKAAEQVFDGMGY--K-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQY 458 (707)
Q Consensus 383 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~ 458 (707)
..+++.|+.+|.+-.+ | |+.....+...+...++.++|.++|++..+ ..|+.+ ....+...|.-.++.+-|..+
T Consensus 269 idQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~Alry 346 (478)
T KOG1129|consen 269 IDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRY 346 (478)
T ss_pred hccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHH
Confidence 5555555555554322 1 333334444555555666666666666655 334333 444445555556666666666
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 043060 459 FNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM---EMKPD--AAIWTSLLGACRVHGRLELGESVAKHLLEL 533 (707)
Q Consensus 459 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 533 (707)
++++.+- |+ .+.+.|+.+.-++.-.+++|-++.-|++. ...|+ ..+|-.|.......||+..|.+.|+-++..
T Consensus 347 YRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 347 YRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred HHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence 6666553 33 34455555555566666666666666654 22344 678888888889999999999999999999
Q ss_pred CCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCc
Q 043060 534 EPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570 (707)
Q Consensus 534 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 570 (707)
+|++..+++.|+..-.+.|++++|..++....+....
T Consensus 425 d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 425 DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 9999999999999999999999999999988775543
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.11 E-value=7.6e-09 Score=92.61 Aligned_cols=163 Identities=16% Similarity=0.178 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 481 (707)
+...+.-+|.+.|+...|..-+++.++ ..|+.. ++..+...|.+.|..+.|.+.|+...+ --+.+..+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHH
Confidence 345567788888999999999998888 677765 788888888889999999999888875 223356778888888
Q ss_pred HHHcCCHHHHHHHHHhCCCCC---C-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhH
Q 043060 482 LGRAGLFDEAEALLKTMEMKP---D-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557 (707)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~p---~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 557 (707)
+|..|++++|...|++.-..| . ..+|..+.....+.|+.+.|+..+++.++.+|+++.+...+++...+.|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999999873333 3 678999998889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 043060 558 ATIRTRLNDKGM 569 (707)
Q Consensus 558 ~~~~~~m~~~~~ 569 (707)
..+++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999999887765
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=3.3e-08 Score=98.59 Aligned_cols=225 Identities=15% Similarity=0.028 Sum_probs=144.8
Q ss_pred CHHHHHHHHHHHhhcC-CCCC--hhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHH
Q 043060 314 DYKEALMLFRQMLQSN-IEPN--DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390 (707)
Q Consensus 314 ~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 390 (707)
..+.++.-+.+++... ..|+ ...|......+...|+.+.|...+...++..+. +...|+.+...|...|++++|.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD--MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHCCCHHHHH
Confidence 3444555555554321 1111 122334444455556666666666666665554 6778888999999999999999
Q ss_pred HHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 043060 391 QVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467 (707)
Q Consensus 391 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 467 (707)
+.|++.. ..+..+|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 9998773 33567888888889999999999999999988 567654322222334567789999999977654 2
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHH--HHHHHh-CCC----CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc-
Q 043060 468 ISPKLQHYGCMVDLLGRAGLFDEA--EALLKT-MEM----KPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENP- 538 (707)
Q Consensus 468 ~~p~~~~~~~li~~~~~~g~~~~A--~~~~~~-~~~----~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~- 538 (707)
..|+...+ .++. ...|+..++ .+.+.+ ... .|+ ...|..+...+...|++++|+..|+++++.+|.+.
T Consensus 195 ~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 33332222 2333 335555443 333322 111 222 46899999999999999999999999999997543
Q ss_pred hhHHHHHHH
Q 043060 539 GAYVLLSNM 547 (707)
Q Consensus 539 ~~~~~l~~~ 547 (707)
..-..++..
T Consensus 272 e~~~~~~e~ 280 (296)
T PRK11189 272 EHRYALLEL 280 (296)
T ss_pred HHHHHHHHH
Confidence 333344443
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=9.1e-07 Score=85.82 Aligned_cols=388 Identities=12% Similarity=0.071 Sum_probs=242.3
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehH-HHHHHHHHhCCC-hhHHHHHHHhCccccCCCCCCHhhHHHHHH
Q 043060 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSY-TALITGYASRGY-LDDARQLFDEMPIREENFVPNESTVVTVLS 241 (707)
Q Consensus 164 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~-~~li~~~~~~g~-~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~ 241 (707)
+...-...+..|...++-+.|...+.+.+..-...- |.|+.-+-+.|- -.++.--+.+.. ++..+ .+ ..|.
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevv-recp~-----aL-~~i~ 168 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVI-RECPM-----AL-QVIE 168 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHH-Hhcch-----HH-HHHH
Confidence 344455677788888899999999888886643333 444433333332 112222222221 00000 00 0011
Q ss_pred HHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHH--hcCCHHHHHHHHHhcC-----CCChhhHHHHHHHHHhcCC
Q 043060 242 ACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYS--KCGDLVKARDLFESIE-----KRDVISWNVMIGGYTHTSD 314 (707)
Q Consensus 242 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~ 314 (707)
+..+.+ +..+...-..|-....+|+......-+.+|+ -.++...|...|-... ..|+.....+...+...|+
T Consensus 169 ~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gd 247 (564)
T KOG1174|consen 169 ALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGD 247 (564)
T ss_pred HHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcC
Confidence 111000 0001111111222223333333333344433 3344444444443332 2477788899999999999
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHhH-HHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHH
Q 043060 315 YKEALMLFRQMLQSNIEPNDVTFLSV-LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393 (707)
Q Consensus 315 ~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 393 (707)
.++|+..|++.+. +.|+..+-.-+ .-.+...|+.+....+...+...... ....|..-.......++++.|+.+-
T Consensus 248 n~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~--ta~~wfV~~~~l~~~K~~~rAL~~~ 323 (564)
T KOG1174|consen 248 YFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY--TASHWFVHAQLLYDEKKFERALNFV 323 (564)
T ss_pred chHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc--chhhhhhhhhhhhhhhhHHHHHHHH
Confidence 9999999999875 34544331111 11235667777777776666554322 2333444444555677888998888
Q ss_pred hcCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 043060 394 DGMGY---KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS 469 (707)
Q Consensus 394 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 469 (707)
++... +++..+-.-...+.+.|+.++|.-.|+..+. +.|. -..|..|+.+|...|.+.+|...-+...+ -++
T Consensus 324 eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~ 399 (564)
T KOG1174|consen 324 EKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQ 399 (564)
T ss_pred HHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhh
Confidence 87654 3455555555678889999999999999988 6664 45999999999999999999887776665 333
Q ss_pred CChHHHHHHH-HHHHH-cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHH
Q 043060 470 PKLQHYGCMV-DLLGR-AGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545 (707)
Q Consensus 470 p~~~~~~~li-~~~~~-~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 545 (707)
.+..+.+.+. ..+.- ..--++|.+++++. .++|+ ....+.+...|...|..+.++.++++.+...|++ ..++.|+
T Consensus 400 ~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lg 478 (564)
T KOG1174|consen 400 NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLG 478 (564)
T ss_pred cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHH
Confidence 4555554442 23322 22347788998884 78898 6778888889999999999999999999998854 7899999
Q ss_pred HHhhhcCChhhHHHHHHHHhhCC
Q 043060 546 NMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 546 ~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
+.+...+.+.+|.+.|......+
T Consensus 479 d~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 479 DIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC
Confidence 99999999999999998876543
No 78
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.2e-06 Score=93.74 Aligned_cols=467 Identities=13% Similarity=0.132 Sum_probs=265.6
Q ss_pred hcccCCCChHHHHHHHhcCCC-CCcchHHHH-----HHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCC
Q 043060 72 CAVSPFGDLSYALLVFETIRE-PNQVIWNNI-----IRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145 (707)
Q Consensus 72 ~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 145 (707)
+.+-|.|-...|++.|..+.. .-++..+.+ +-.|.-.-.++++++.++.|+..+++-|..+...+..-|...-.
T Consensus 614 qLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg 693 (1666)
T KOG0985|consen 614 QLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLG 693 (1666)
T ss_pred HHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 566678888888888877764 111111111 23444455788999999999988887777766666665555444
Q ss_pred hHHHHHHHHHHHHh-----------CCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCC---------------C-----
Q 043060 146 ISEGKQIHAHVLKL-----------GLESDPFVHTSLINMYAQNGELESARLVFNKSSL---------------R----- 194 (707)
Q Consensus 146 ~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---------------~----- 194 (707)
.+.-.++|+..... ++..|+.+.-..|.+.++.|++.+.+++-++-.. .
T Consensus 694 ~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPL 773 (1666)
T KOG0985|consen 694 AQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPL 773 (1666)
T ss_pred HHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCce
Confidence 45555555544322 3466778888899999999999999888764321 0
Q ss_pred -----------CeehH------HHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhH-------------HHHHHHHh
Q 043060 195 -----------DAVSY------TALITGYASRGYLDDARQLFDEMPIREENFVPNESTV-------------VTVLSACA 244 (707)
Q Consensus 195 -----------~~~~~------~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~-------------~~ll~~~~ 244 (707)
|.+.| ...|..|++.=++.+.-.+...++. +.-+.... ..+..-+-
T Consensus 774 iiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD----~dC~E~~ik~Li~~v~gq~~~deLv~EvE 849 (1666)
T KOG0985|consen 774 IIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLD----VDCSEDFIKNLILSVRGQFPVDELVEEVE 849 (1666)
T ss_pred EEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhc----CCCcHHHHHHHHHHHhccCChHHHHHHHH
Confidence 11111 1234445544333333333322211 11111111 12222333
Q ss_pred ccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHH--------------------------------------
Q 043060 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK-------------------------------------- 286 (707)
Q Consensus 245 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-------------------------------------- 286 (707)
+.+++..-...++..+..| ..|+.++|+|...|...++-.+
T Consensus 850 kRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~e 928 (1666)
T KOG0985|consen 850 KRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLE 928 (1666)
T ss_pred hhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHH
Confidence 4444555555566666666 4577888888877765542111
Q ss_pred --------------HHHHHHhc--------C---------------------CCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043060 287 --------------ARDLFESI--------E---------------------KRDVISWNVMIGGYTHTSDYKEALMLFR 323 (707)
Q Consensus 287 --------------A~~~~~~~--------~---------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~ 323 (707)
|+-+.++. . ..|+..-+..+.++...+-+.+-+++++
T Consensus 929 lI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLE 1008 (1666)
T KOG0985|consen 929 LINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLE 1008 (1666)
T ss_pred HHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 00000000 0 0122222333445555555555555555
Q ss_pred HHhhcCCCC-ChhhH-HhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC----
Q 043060 324 QMLQSNIEP-NDVTF-LSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---- 397 (707)
Q Consensus 324 ~m~~~g~~p-~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---- 397 (707)
+..-..-.. ....+ +.++-. +-..+...+.+..+.+-.. +. -.+.......+-+++|..+|++..
T Consensus 1009 KIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLdny--Da------~~ia~iai~~~LyEEAF~ifkkf~~n~~ 1079 (1666)
T KOG0985|consen 1009 KIVLDNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLDNY--DA------PDIAEIAIENQLYEEAFAIFKKFDMNVS 1079 (1666)
T ss_pred HHhcCCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhccC--Cc------hhHHHHHhhhhHHHHHHHHHHHhcccHH
Confidence 554221000 00001 111100 0000111111111111000 00 001112222333444444444321
Q ss_pred ---------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHH
Q 043060 398 ---------------------YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR 456 (707)
Q Consensus 398 ---------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 456 (707)
-..+..|..+..+-.+.|...+|++-|-+. -|+..|.-++..+++.|.+++-.
T Consensus 1080 A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv 1153 (1666)
T KOG0985|consen 1080 AIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLV 1153 (1666)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHH
Confidence 113457999999999999999999888532 35568999999999999999999
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 043060 457 QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 457 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 536 (707)
.++....++ .-.|.+.+ .|+-+|++.+++.+-++++. -|+..-...+.+-|...|.++.|+-+|.
T Consensus 1154 ~yL~MaRkk-~~E~~id~--eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~-------- 1218 (1666)
T KOG0985|consen 1154 KYLLMARKK-VREPYIDS--ELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS-------- 1218 (1666)
T ss_pred HHHHHHHHh-hcCccchH--HHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------
Confidence 999877664 55666554 68999999999999888764 4777778889999999999999988886
Q ss_pred CchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCccCC
Q 043060 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVP 573 (707)
Q Consensus 537 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 573 (707)
+.+.|..|+..+...|.+..|...-++.......|+.
T Consensus 1219 ~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~V 1255 (1666)
T KOG0985|consen 1219 NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEV 1255 (1666)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 3466778888888888888777655554443333333
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.06 E-value=1.4e-06 Score=89.47 Aligned_cols=414 Identities=11% Similarity=0.058 Sum_probs=199.9
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCC---CCeehHHHHHHHHHhCCChhHHHHHH
Q 043060 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL---RDAVSYTALITGYASRGYLDDARQLF 219 (707)
Q Consensus 143 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 219 (707)
.+++..+++..+.+++ +.+....+.....-.+...|+-++|....+.... ++.++|..+.-.+-...++++|++.|
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 3445555555555544 2222222222222223445555555555543332 24455666655555566666666666
Q ss_pred HhCccccCCCCCC-HhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 043060 220 DEMPIREENFVPN-ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK-- 296 (707)
Q Consensus 220 ~~m~~~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 296 (707)
...+ .+.|| ...+.-+.-.-++.++++.....-....+.. +.....|..++-++.-.|+...|..+.+...+
T Consensus 99 ~nAl----~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 99 RNAL----KIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHH----hcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6653 23333 2333333333344455554444444433331 22334455555555555666665555544332
Q ss_pred ---CChhhHHH------HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHH-hHHHHHhccCCchHHHHHHHHHHHhCCC
Q 043060 297 ---RDVISWNV------MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL-SVLPACAYLGALDLGKWIHAYIDKNHQK 366 (707)
Q Consensus 297 ---~~~~~~~~------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 366 (707)
++...+.. .......+|..++|++.+..-... ..|...+. .-...+.+.+++++|..++..++...++
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd 251 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD 251 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch
Confidence 11111111 123344555555555555443221 11222211 1223345556666666666666665554
Q ss_pred CCcHHHHhHHhhHHHhcCCHHHHH-HHHhcCCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 043060 367 LNNVSLWTSLIDMYAKCGNIKAAE-QVFDGMGYK---TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442 (707)
Q Consensus 367 ~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 442 (707)
+...|-.+..++++-.+.-++. .+|...... ....-..=++......-.+..-+.+..+.+.|+++--..+.+
T Consensus 252 --n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~S- 328 (700)
T KOG1156|consen 252 --NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRS- 328 (700)
T ss_pred --hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHH-
Confidence 4444555555554322323333 444433211 000000000000111112333445566666666543323222
Q ss_pred HHHHhccCCHHH----HHHHHHHhHHh---------cCCCCChHHHH--HHHHHHHHcCCHHHHHHHHHhC-CCCCC-HH
Q 043060 443 LSACNHAGLLDI----GRQYFNAMIQD---------YKISPKLQHYG--CMVDLLGRAGLFDEAEALLKTM-EMKPD-AA 505 (707)
Q Consensus 443 l~a~~~~g~~~~----a~~~~~~~~~~---------~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~ 505 (707)
.+-.-...+- +..+...+... ..-+|....|+ .++..|-+.|+++.|...++.. +-.|. ..
T Consensus 329 --Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliE 406 (700)
T KOG1156|consen 329 --LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIE 406 (700)
T ss_pred --HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHH
Confidence 2222111111 11111111100 00134544443 5667778888888888888875 55566 55
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 506 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.|..=...+...|+++.|...++++.+++..|...-.--+.-..++.+.++|.++.....+.|.
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 6666667778888888888888888888866654444566667788888888888777766653
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.05 E-value=2e-07 Score=97.42 Aligned_cols=443 Identities=16% Similarity=0.085 Sum_probs=266.2
Q ss_pred CCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCC-Cccc
Q 043060 57 GLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE---PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVP-NTYT 132 (707)
Q Consensus 57 ~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t 132 (707)
.+..|..+|..|. -+...+|+++.+.+.|++... .....|+.+-..+...|....|+.+.+.-....-.| |...
T Consensus 318 ~~qnd~ai~d~Lt--~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 318 KFQNDAAIFDHLT--FALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhcchHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 3556788888887 777788888888888887653 344568888888888888888888877655432123 3333
Q ss_pred HHHHHHHHh-ccCChHHHHHHHHHHHHhC--C--CCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHH
Q 043060 133 FPFILKSCA-KISAISEGKQIHAHVLKLG--L--ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA 207 (707)
Q Consensus 133 ~~~ll~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 207 (707)
+-..-+.|. +.+.++++..+-..++... . ...+..|..+.-+|...-. ....+.-
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~--------------~a~~~se------ 455 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR--------------QANLKSE------ 455 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh--------------cCCChHH------
Confidence 333334444 4456666666666665521 0 1112223333333321100 0001100
Q ss_pred hCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHH
Q 043060 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA 287 (707)
Q Consensus 208 ~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 287 (707)
+.....++++.+++..+. ..-.|+...|.++- ++..++++.|.+...+..+.+-..+...|..|+-.+.-.+++.+|
T Consensus 456 R~~~h~kslqale~av~~-d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 456 RDALHKKSLQALEEAVQF-DPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHH
Confidence 111235677777777532 44455555554443 556678999999999988887677888999999999999999999
Q ss_pred HHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCCCChhhHHhHHHHHhccCCchHHHHHHHHHHH
Q 043060 288 RDLFESIEKR---DVISWNVMIGGYTHTSDYKEALMLFRQMLQS--NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362 (707)
Q Consensus 288 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 362 (707)
+.+.+...+. |-+.-..-+..-..-++.++|+.....+... ...+-..+.. .|....-..-......
T Consensus 533 l~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~--------~g~~~~lk~~l~la~~ 604 (799)
T KOG4162|consen 533 LDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD--------EGKLLRLKAGLHLALS 604 (799)
T ss_pred HHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh--------hhhhhhhhcccccCcc
Confidence 9888776532 2111112223333467777777776666531 0111111100 0000000000000000
Q ss_pred hCCCCCcHHHHhHHhhHHHh---cCCHHHHHHHHhcCCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 043060 363 NHQKLNNVSLWTSLIDMYAK---CGNIKAAEQVFDGMGYKT------LASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433 (707)
Q Consensus 363 ~~~~~~~~~~~~~li~~y~~---~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 433 (707)
.... .+.++..+...... .-..+.....+...+.++ ...|......+...+..++|...+.+... +.
T Consensus 605 -q~~~-a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~ 680 (799)
T KOG4162|consen 605 -QPTD-AISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--ID 680 (799)
T ss_pred -cccc-cchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cc
Confidence 0000 12222222222111 111111122222222332 23577777888899999999988888876 44
Q ss_pred CCH-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHH--HHHhC-CCCCC-HHHH
Q 043060 434 PDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEA--LLKTM-EMKPD-AAIW 507 (707)
Q Consensus 434 p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~~-~~~p~-~~~~ 507 (707)
|-. ..|......+...|..++|.+.|.... -+.| ++...+++..++.+.|+..-|.+ ++..+ .+.|+ ...|
T Consensus 681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW 757 (799)
T KOG4162|consen 681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAW 757 (799)
T ss_pred hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHH
Confidence 443 366666677788899999999998876 4455 56788899999999998777777 77776 77776 8999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 043060 508 TSLLGACRVHGRLELGESVAKHLLELEPENPG 539 (707)
Q Consensus 508 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 539 (707)
-.+...+.+.|+.+.|.+.|..++++++.+|.
T Consensus 758 ~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 758 YYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999999999999987764
No 81
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.03 E-value=5.8e-07 Score=85.00 Aligned_cols=212 Identities=14% Similarity=0.104 Sum_probs=126.8
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcC---CCCChHHHHHHHHHHHHcCCHHH
Q 043060 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM---GYKTLASWNAMISGLAMHGKADK 419 (707)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~ 419 (707)
.+...|+...++.....+++..+. +...+..-..+|...|++..|+.=++.. ...+.....-+-..+...|+.+.
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~~W--da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQPW--DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcCcc--hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHH
Confidence 344556666666666666665554 7777888888888888888887655543 45566677777777888888888
Q ss_pred HHHHHHHHHHCCCCCCHhH-HH---HH---------HHHHhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHH
Q 043060 420 ALSLFSRMIGEGLQPDDIT-FV---GV---------LSACNHAGLLDIGRQYFNAMIQDYKISPK-----LQHYGCMVDL 481 (707)
Q Consensus 420 A~~~~~~m~~~g~~p~~~t-~~---~l---------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~ 481 (707)
++...++-++ +.||... |. .| +......+.+.++.+..+...+. .|. ...+..+-.+
T Consensus 242 sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C 316 (504)
T KOG0624|consen 242 SLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTC 316 (504)
T ss_pred HHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeec
Confidence 8888888877 7787652 21 11 11123344555555555554432 222 1122334445
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHH
Q 043060 482 LGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559 (707)
Q Consensus 482 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 559 (707)
|...|++.+|+....+. .+.|| +.++.--..+|.....++.|+.-|+++.+.+++|..+-.. .+.|.+
T Consensus 317 ~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG----------le~Akr 386 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG----------LERAKR 386 (504)
T ss_pred ccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHH
Confidence 55566666666666654 55555 5566666666666666677777777776666665433222 244555
Q ss_pred HHHHHhhCCCcc
Q 043060 560 IRTRLNDKGMKK 571 (707)
Q Consensus 560 ~~~~m~~~~~~~ 571 (707)
+.++.-+++.-|
T Consensus 387 lkkqs~kRDYYK 398 (504)
T KOG0624|consen 387 LKKQSGKRDYYK 398 (504)
T ss_pred HHHHhccchHHH
Confidence 555554444433
No 82
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.01 E-value=1.4e-06 Score=90.09 Aligned_cols=233 Identities=16% Similarity=0.209 Sum_probs=163.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCH
Q 043060 307 GGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386 (707)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 386 (707)
..+.+.|+++.|+..|-+... ....+.+......+..|..+++.+...... ...|..+.+-|+..|++
T Consensus 714 ~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~~---s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKTA---SGYYGEIADHYANKGDF 781 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhccc---cccchHHHHHhccchhH
Confidence 445556666666666654422 223445556677888888888887766543 33577788899999999
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 043060 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466 (707)
Q Consensus 387 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 466 (707)
+.|+++|-+.. .++-.|..|.+.|++++|.++-.+... .......|..-..-.-+.|++.+|.+++-.+-
T Consensus 782 e~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~--- 851 (1636)
T KOG3616|consen 782 EIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG--- 851 (1636)
T ss_pred HHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc---
Confidence 99999997653 456678889999999999888766542 33334456666666778899999988876542
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHH
Q 043060 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL 544 (707)
Q Consensus 467 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 544 (707)
.|+. -|.+|-+.|..++.+++.++-. || ..|...+..-+...|++..|+..|-++ .-+..-
T Consensus 852 --~p~~-----aiqmydk~~~~ddmirlv~k~h--~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaa 914 (1636)
T KOG3616|consen 852 --EPDK-----AIQMYDKHGLDDDMIRLVEKHH--GDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAA 914 (1636)
T ss_pred --CchH-----HHHHHHhhCcchHHHHHHHHhC--hhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHH
Confidence 2553 4678999999999999988753 33 557777888888999999998877654 345566
Q ss_pred HHHhhhcCChhhHHHHHHHHhhCCCccCCcccEE
Q 043060 545 SNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSI 578 (707)
Q Consensus 545 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 578 (707)
.++|-..+.|++|-++-+.--..+..|....-|.
T Consensus 915 vnmyk~s~lw~dayriaktegg~n~~k~v~flwa 948 (1636)
T KOG3616|consen 915 VNMYKASELWEDAYRIAKTEGGANAEKHVAFLWA 948 (1636)
T ss_pred HHHhhhhhhHHHHHHHHhccccccHHHHHHHHHH
Confidence 7889999999999887654333333344444443
No 83
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.97 E-value=1e-05 Score=83.34 Aligned_cols=124 Identities=20% Similarity=0.232 Sum_probs=68.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL-QHYGCMVDLLGRAGLFDEAEALLKTM-EM-KPDAAIWTSLLGAC 514 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~ 514 (707)
|+.-+...+-+.|+++.|..+++..+ +..|+. +.|-.-..++...|++++|..++++. .+ .||..+-.--..-.
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 33445556666777777777777665 334443 45555556667777777777777765 22 24443333444445
Q ss_pred HhcCChhHHHHHHHHHHccCCC---C----chhHHHH--HHHhhhcCChhhHHHHHHHH
Q 043060 515 RVHGRLELGESVAKHLLELEPE---N----PGAYVLL--SNMYAGAGRWDDVATIRTRL 564 (707)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~p~---~----~~~~~~l--~~~~~~~g~~~~a~~~~~~m 564 (707)
.+.++.++|.+++.+..+-+.+ | .-.|+.+ +.+|.+.|++.+|.+=|..+
T Consensus 450 LrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 5666777777766665554321 0 0122222 45566677766666544433
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.96 E-value=7.8e-06 Score=86.38 Aligned_cols=253 Identities=16% Similarity=0.165 Sum_probs=142.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-hhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHH
Q 043060 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPN-DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381 (707)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 381 (707)
..+...|-..|++++|++.+++.++. .|+ ...|..-...+-+.|++.+|....+........ |..+-+-.+..+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~--DRyiNsK~aKy~L 273 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA--DRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh--hHHHHHHHHHHHH
Confidence 45566677777888888887777764 454 335555666777778888887777777777665 7777777788888
Q ss_pred hcCCHHHHHHHHhcCCCCC------hH----HHH--HHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHh----------
Q 043060 382 KCGNIKAAEQVFDGMGYKT------LA----SWN--AMISGLAMHGKADKALSLFSRMIGE--GLQPDDI---------- 437 (707)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~~------~~----~~~--~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~---------- 437 (707)
++|++++|.+++......+ .. .|- ....+|.+.|++..|++-|....+. .+.-|..
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~ 353 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKM 353 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhc
Confidence 8888888888877664433 11 343 3456788888888888776655441 1222222
Q ss_pred ---HHHHHHHHHhccC-------CHHHHHHHHHHhHHhcCCCC-----------ChHHHHHHHHHH---HHcCCHHHHHH
Q 043060 438 ---TFVGVLSACNHAG-------LLDIGRQYFNAMIQDYKISP-----------KLQHYGCMVDLL---GRAGLFDEAEA 493 (707)
Q Consensus 438 ---t~~~ll~a~~~~g-------~~~~a~~~~~~~~~~~~~~p-----------~~~~~~~li~~~---~~~g~~~~A~~ 493 (707)
+|..++...-+.. -...|.+++-.+........ +..--..+-.-- .+...-+++.+
T Consensus 354 t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~ 433 (517)
T PF12569_consen 354 TLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEK 433 (517)
T ss_pred cHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 2333333221111 11233344333322100000 000000000000 11111111211
Q ss_pred HHHh-----------C----C--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhh
Q 043060 494 LLKT-----------M----E--MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 494 ~~~~-----------~----~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 556 (707)
.-.+ . + ..||+.- ..|+ ....=+++|.+.++-+.+..|++..+|..--.+|.+.|++--
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LL 509 (517)
T PF12569_consen 434 AAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLL 509 (517)
T ss_pred HHhhhhhhhhccccccccccCCcCCCCccH-HHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHH
Confidence 1100 0 1 1122211 1111 223347889999999999999999999999999999999998
Q ss_pred HHHHHHH
Q 043060 557 VATIRTR 563 (707)
Q Consensus 557 a~~~~~~ 563 (707)
|.+.+.+
T Consensus 510 aLqaL~k 516 (517)
T PF12569_consen 510 ALQALKK 516 (517)
T ss_pred HHHHHHh
Confidence 8876653
No 85
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=1.9e-08 Score=94.14 Aligned_cols=232 Identities=16% Similarity=0.158 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHH-hHHHHHh
Q 043060 269 HVTNALIDMYSKCGDLVKARDLFESIEK--RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL-SVLPACA 345 (707)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~ 345 (707)
---+.+..+|.+.|.+.+|++.|+.-.+ +-+.+|-.|-..|.+..+++.|+.+|.+-.+. .|-.+||. .+.+.+.
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 3347789999999999999999988764 57789999999999999999999999998764 56666653 2333444
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 043060 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425 (707)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 425 (707)
..++.+.+.++++.+.+.... ++. +..++..+|.-.++++-|+..|+
T Consensus 302 am~~~~~a~~lYk~vlk~~~~--nvE-------------------------------aiAcia~~yfY~~~PE~AlryYR 348 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPI--NVE-------------------------------AIACIAVGYFYDNNPEMALRYYR 348 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCc--cce-------------------------------eeeeeeeccccCCChHHHHHHHH
Confidence 445555555555555554433 333 33344445555556666666666
Q ss_pred HHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 043060 426 RMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK--LQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP 502 (707)
Q Consensus 426 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 502 (707)
++++.|+. +...|..+.-+|.-.+++|-++.-|++...- --.|+ ...|-.+.......|++.-|.+-|+-. ...|
T Consensus 349 RiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 349 RILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 66665543 3334555555566666666666655555432 22232 244555555666667777777766654 3334
Q ss_pred C-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 043060 503 D-AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537 (707)
Q Consensus 503 ~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 537 (707)
+ ...++.|.-.-.+.|+++.|..++..+....|.-
T Consensus 427 ~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 427 QHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 4 6677777777777777777777777777766653
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=5.2e-07 Score=90.80 Aligned_cols=89 Identities=16% Similarity=0.147 Sum_probs=48.5
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhh
Q 043060 479 VDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 556 (707)
.+.+.+.|++.+|++.+.++ ...|+ ...|.....+|.+.|++..|..-.+..++++|+....|..-+.++....+|++
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydk 444 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDK 444 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555554 23343 55555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhhC
Q 043060 557 VATIRTRLNDK 567 (707)
Q Consensus 557 a~~~~~~m~~~ 567 (707)
|.+.|.+..+.
T Consensus 445 Aleay~eale~ 455 (539)
T KOG0548|consen 445 ALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHhc
Confidence 55555555443
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.91 E-value=2.2e-07 Score=91.32 Aligned_cols=163 Identities=17% Similarity=0.171 Sum_probs=104.6
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 448 (707)
+..+......+|...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+ ...|. +...+..++..
T Consensus 101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~ 175 (290)
T PF04733_consen 101 NEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVN 175 (290)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHH
Confidence 3333444455677789999998888765 5666677778888999999999999999987 44443 34444444332
Q ss_pred ----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCh-h
Q 043060 449 ----AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRL-E 521 (707)
Q Consensus 449 ----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~-~ 521 (707)
.+.+.+|..+|+++.. ...+++.+.+.+..++...|++++|.+++++. ...|+ +.++..++......|+. +
T Consensus 176 l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 176 LATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp HHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCH
T ss_pred HHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChh
Confidence 2357777777777765 34456666777777777777777777777663 44444 55666666666666666 5
Q ss_pred HHHHHHHHHHccCCCCc
Q 043060 522 LGESVAKHLLELEPENP 538 (707)
Q Consensus 522 ~A~~~~~~~~~~~p~~~ 538 (707)
.+.+...++....|+++
T Consensus 254 ~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 254 AAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHhCCCCh
Confidence 56666666666666654
No 88
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=3.7e-06 Score=88.31 Aligned_cols=406 Identities=13% Similarity=0.113 Sum_probs=243.4
Q ss_pred CchhhhhhhchhhcccCCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHHC-C--------CCCCc
Q 043060 60 NTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILS-G--------FVPNT 130 (707)
Q Consensus 60 ~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~ 130 (707)
.|..+-.+++.-++|..-|+.+.|.+-...++ +-..|..|.+.+++.++.+-|.-.+..|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 47778888887788999999999988777765 4457999999999999998888777766431 1 1222
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCC-CeehHHHHHHHHHhC
Q 043060 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-DAVSYTALITGYASR 209 (707)
Q Consensus 131 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~ 209 (707)
.+=..+.-.....|.+++|+.++.+-.+. ..|=..|-..|.+++|.++-+.-..- =..||.....-+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 33333333345789999999999987764 34556677889999998887543211 123566666667778
Q ss_pred CChhHHHHHHHhCcccc-------CCCC----------CCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHH
Q 043060 210 GYLDDARQLFDEMPIRE-------ENFV----------PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272 (707)
Q Consensus 210 g~~~~A~~l~~~m~~~~-------~~~~----------p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 272 (707)
++.+.|++.|++..... ...+ -|...|..-..-.-..|+.+.|..++....+ |-
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 88999998888752100 0000 1111122222222234455555544444332 33
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCc--
Q 043060 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL-- 350 (707)
Q Consensus 273 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-- 350 (707)
+++...|-.|+.++|-++-++ ..|..+...+...|-..|++.+|...|.+.+. |...|+.|-..+.-
T Consensus 943 s~VrI~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDR 1011 (1416)
T ss_pred hheeeEeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHH
Confidence 455555556666666666554 23566677788888888999999888877643 33444433222211
Q ss_pred -------------hHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC--------------CCChHH
Q 043060 351 -------------DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG--------------YKTLAS 403 (707)
Q Consensus 351 -------------~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--------------~~~~~~ 403 (707)
-.|-.+|+ +.|.. ..--+..|-+.|.+.+|+++-=+-. ..|+..
T Consensus 1012 L~nlal~s~~~d~v~aArYyE---e~g~~------~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYE---ELGGY------AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHHHHhhcCchhHHHHHHHHH---Hcchh------hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 11111221 12211 2234566778888777776532221 235556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh----HHHHHHH
Q 043060 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL----QHYGCMV 479 (707)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li 479 (707)
.+--..-+..+.++++|..++-..++ |...+..|...+ +.-..++-+.|.-...-.|+. .....+.
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqva 1152 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVA 1152 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHH
Confidence 66666677788888888888876655 444555554433 222333333333222222333 3456677
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 043060 480 DLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522 (707)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 522 (707)
+.+.++|.+..|-+-|.+.+.+ ..-+.++.+.||.++
T Consensus 1153 e~c~qQG~Yh~AtKKfTQAGdK------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1153 ELCLQQGAYHAATKKFTQAGDK------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHHhccchHHHHHHHhhhhhH------HHHHHHHHhcCCcce
Confidence 8899999999999999887633 223455566776553
No 89
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=6.6e-08 Score=97.94 Aligned_cols=218 Identities=16% Similarity=0.151 Sum_probs=171.6
Q ss_pred hccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHH
Q 043060 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKAL 421 (707)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 421 (707)
.+.|++..|.-.|+..++..+. +...|.-|...-...++-..|+..+++.. ..|....-.|...|...|.-.+|+
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~--haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ--HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH--HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 4567777777777777777776 77888888888888888778887777653 346677777888888888888899
Q ss_pred HHHHHHHHCCCCCCHhHHHHH--------HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 043060 422 SLFSRMIGEGLQPDDITFVGV--------LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493 (707)
Q Consensus 422 ~~~~~m~~~g~~p~~~t~~~l--------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 493 (707)
..++.-+.. +|...-...- -........+....++|-++....+..+|...+.+|.-+|.-.|.++.|.+
T Consensus 374 ~~L~~Wi~~--~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRN--KPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHh--CccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 888887663 2211100000 011222334556667777777766766899999999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 494 LLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 494 ~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
-|+.+ .++|+ ..+||-|...++...+.++|+..|.+++++.|.-..+.+.|+-.|...|.++||.+.|-....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99986 77886 889999999999999999999999999999999999999999999999999999999877654
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.89 E-value=3.5e-07 Score=82.14 Aligned_cols=192 Identities=15% Similarity=0.096 Sum_probs=117.9
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhc
Q 043060 373 WTSLIDMYAKCGNIKAAEQVFDGMGYK---TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNH 448 (707)
Q Consensus 373 ~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~ 448 (707)
...|.-.|...|+...|..-+++..+. +..+|..+...|.+.|+.+.|.+.|++..+ +.|+.- ..|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHh
Confidence 444555666666766666666665432 334666666666667777777777776666 455443 45555555566
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 043060 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESV 526 (707)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~ 526 (707)
.|.+++|.+.|+....+....--..+|..++-+-.++|+++.|.+.|++. ...|+ ..+...+.....+.|++-.|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 66777777777666655333333455666666666677777777766664 44454 55566666666667777777776
Q ss_pred HHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 527 AKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 527 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
++......+.+.......+.+-...|+-+.+.++=.++..
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666665555555666666666666666666665554443
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.88 E-value=7e-05 Score=88.21 Aligned_cols=196 Identities=14% Similarity=0.092 Sum_probs=105.4
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCCC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC--Hh
Q 043060 373 WTSLIDMYAKCGNIKAAEQVFDGMGY-------K----TLASWNAMISGLAMHGKADKALSLFSRMIGEG--LQPD--DI 437 (707)
Q Consensus 373 ~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~ 437 (707)
...+...+...|++++|...+++... . ....+..+...+...|++++|...+++..... ..+. ..
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence 34445555666666666665554311 0 11223344445555677777777766654421 1121 12
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH-----HHHHHHHHHcCCHHHHHHHHHhCCCC--CCH----HH
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY-----GCMVDLLGRAGLFDEAEALLKTMEMK--PDA----AI 506 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~--p~~----~~ 506 (707)
.+..+.......|+.++|.+.+..+............+ ......+...|+.++|.+.+...... ... ..
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 33334445566777777777766654321111111111 01123345567777777777664211 111 12
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccC------CCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 507 WTSLLGACRVHGRLELGESVAKHLLELE------PENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 507 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
+..+..++...|+.++|...++++++.. +....++..++.+|.+.|+.++|.+.+.+..+..
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3455666777788888888777777642 1122356677777888888888888877776543
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=3e-06 Score=78.73 Aligned_cols=417 Identities=13% Similarity=0.074 Sum_probs=243.1
Q ss_pred CCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCC--CeehHHH
Q 043060 124 SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR--DAVSYTA 201 (707)
Q Consensus 124 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~~~~~~~ 201 (707)
.|+..-.--+.+++..+.+..++..|.+++..-.++. +.+....+.|...|....++..|-..++++... ...-|..
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl 82 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL 82 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 3444444557777877888888888888888766653 235556677777888888888888888877532 2222221
Q ss_pred -HHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHH--hccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 043060 202 -LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC--AHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMY 278 (707)
Q Consensus 202 -li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~--~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 278 (707)
-...+.+.+.+..|+.+...|.. . |+...-..-+.+. -+.+++..+..+.++.-.. .+..+.+......
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D--~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCll 154 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLD--N---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLL 154 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcC--C---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchhee
Confidence 24566678888889988888842 1 3322222222222 2456677777666654422 2455556666667
Q ss_pred HhcCCHHHHHHHHHhcCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHH-hHHHHHhccCCchHH
Q 043060 279 SKCGDLVKARDLFESIEKR----DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL-SVLPACAYLGALDLG 353 (707)
Q Consensus 279 ~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a 353 (707)
.+.|+++.|.+-|+...+- ...+||..+..| +.|+++.|+++..+..+.|++..+..=. ....+- ....+..-
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi-DvrsvgNt 232 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGI-DVRSVGNT 232 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC-chhcccch
Confidence 7888888888888876652 455676655444 5677888888888888887653222100 000000 00000111
Q ss_pred HHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043060 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-----TLASWNAMISGLAMHGKADKALSLFSRMI 428 (707)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 428 (707)
..++... -+..+|.-...+.+.|+.+.|.+.+-.|+.+ |+++...+.-.- ..+++.+..+-+.-+.
T Consensus 233 ~~lh~Sa--------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL 303 (459)
T KOG4340|consen 233 LVLHQSA--------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLL 303 (459)
T ss_pred HHHHHHH--------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHH
Confidence 1111111 1234455556678899999999999999865 677765553222 2455666666666666
Q ss_pred HCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC-CCChHHHHHHHHHHHH-cCCHHHHHHHHHhCCCCCCHH
Q 043060 429 GEGLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI-SPKLQHYGCMVDLLGR-AGLFDEAEALLKTMEMKPDAA 505 (707)
Q Consensus 429 ~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~p~~~ 505 (707)
+ +.|- ..||..++-.|++..-++.|-.++.+-... -. -.+...|+ |++++.- .-..++|.+-++.+...--..
T Consensus 304 ~--~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~k 379 (459)
T KOG4340|consen 304 Q--QNPFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEK 379 (459)
T ss_pred h--cCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 6 3443 459999999999999999988887643110 00 01222333 3344433 345677776665541000000
Q ss_pred HHHHHHHHH-HhcCC----hhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 506 IWTSLLGAC-RVHGR----LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 506 ~~~~ll~~~-~~~g~----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
.-..-+..- .++.+ +..+.+-+++.+++.- .+....++.|.+..++.-+.++|..-.+-
T Consensus 380 LRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 380 LRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 001111111 11121 2334455566666542 25667788899999999999999876653
No 93
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.83 E-value=8.2e-06 Score=87.85 Aligned_cols=373 Identities=15% Similarity=0.073 Sum_probs=198.5
Q ss_pred HHHHHHHHHhCCCCch-hhhhhhchhhcccCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHH
Q 043060 47 KQVHSQIIKTGLHNTQ-FALSKLIEICAVSPFGDLSYALLVFETIRE---PNQVIWNNIIRGHSLSSSPVVAIKFYVRMI 122 (707)
Q Consensus 47 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 122 (707)
..++..+....+.++. ..|..|- ..|....+...|.+.|+..-+ .|..+|......|++..++++|..+.-..-
T Consensus 476 ~al~ali~alrld~~~apaf~~LG--~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLG--QIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 3444444444444433 3456666 777777788889999988765 466788899999999999999999843322
Q ss_pred HCC-CCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHH
Q 043060 123 LSG-FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTA 201 (707)
Q Consensus 123 ~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~ 201 (707)
+.. ...-...|..+--.+...++...+..-|+...+.. +-|...|..|..+|..+|++..|.++|.+...-++.+|-.
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 211 00011223333334556778888888888877765 4567789999999999999999999998776554443322
Q ss_pred ---HHHHHHhCCChhHHHHHHHhCccccC----CCCCCHhhHHHHHHHHhccCC-------chHHHHHHHHHHHc-----
Q 043060 202 ---LITGYASRGYLDDARQLFDEMPIREE----NFVPNESTVVTVLSACAHMGS-------LELGNWVCSLIEGH----- 262 (707)
Q Consensus 202 ---li~~~~~~g~~~~A~~l~~~m~~~~~----~~~p~~~t~~~ll~~~~~~g~-------~~~a~~~~~~~~~~----- 262 (707)
....-+..|.+.+|+..+........ +..--..++..+...+...|- ++.+.+.+.-....
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~ 712 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSD 712 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 12334456777777777666532110 111111111111111111111 11111111111100
Q ss_pred ---------------CCCch---hHHHHHHHHHHHhcCCH---H---HHHHHHHhcCC--CChhhHHHHHHHHHh-----
Q 043060 263 ---------------GLGSN---LHVTNALIDMYSKCGDL---V---KARDLFESIEK--RDVISWNVMIGGYTH----- 311 (707)
Q Consensus 263 ---------------g~~~~---~~~~~~li~~~~~~g~~---~---~A~~~~~~~~~--~~~~~~~~li~~~~~----- 311 (707)
-+.|+ ......|..-.-+.+.. + -+.+.+-.-.+ .+..+|..++..|.+
T Consensus 713 ~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l 792 (1238)
T KOG1127|consen 713 RLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLL 792 (1238)
T ss_pred HHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHc
Confidence 01233 33333333222222222 1 12222221111 235566666555443
Q ss_pred ---cCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHH
Q 043060 312 ---TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388 (707)
Q Consensus 312 ---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 388 (707)
..+...|+.-+.+..+.. .-+..+|+. +......|++.-+. |..+...-..+....+|..+.-.+.+..+++.
T Consensus 793 ~et~~~~~~Ai~c~KkaV~L~-ann~~~Wna-LGVlsg~gnva~aQ--HCfIks~~sep~~~~~W~NlgvL~l~n~d~E~ 868 (1238)
T KOG1127|consen 793 GETMKDACTAIRCCKKAVSLC-ANNEGLWNA-LGVLSGIGNVACAQ--HCFIKSRFSEPTCHCQWLNLGVLVLENQDFEH 868 (1238)
T ss_pred CCcchhHHHHHHHHHHHHHHh-hccHHHHHH-HHHhhccchhhhhh--hhhhhhhhccccchhheeccceeEEecccHHH
Confidence 122245777777766532 223344443 33344445544443 44444433333367777778878888888888
Q ss_pred HHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043060 389 AEQVFDGMGY---KTLASWNAMISGLAMHGKADKALSLFSR 426 (707)
Q Consensus 389 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 426 (707)
|...|..... .|...|-.........|+.-+++.+|..
T Consensus 869 A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 869 AEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 8888877643 2455665555555555655556555554
No 94
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.83 E-value=3.2e-06 Score=89.24 Aligned_cols=125 Identities=18% Similarity=0.180 Sum_probs=81.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGAC 514 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 514 (707)
++..+...|...|++++|.++++..++ ..| .+..|..-...|-+.|++++|.+.++.. ...+ |-.+-+-....+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 344455566777888888888877765 234 3567777777788888888887777775 2332 445555566667
Q ss_pred HhcCChhHHHHHHHHHHccC--CCC-c----hhH--HHHHHHhhhcCChhhHHHHHHHHh
Q 043060 515 RVHGRLELGESVAKHLLELE--PEN-P----GAY--VLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~--p~~-~----~~~--~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
.+.|++++|.+++......+ |.. . -.| ..-+.+|.+.|++..|.+.|..+.
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77788888887777665544 211 0 122 345677888888888877666554
No 95
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=6.1e-05 Score=81.27 Aligned_cols=463 Identities=13% Similarity=0.128 Sum_probs=258.1
Q ss_pred hHHHHHHHHHHHHhCCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHH
Q 043060 43 MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI 122 (707)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 122 (707)
+.......+..++.|. .|+.++|+|. +.|...++-.+ +.+.+-+ .-=+..+.-|+..+++.-|.-.|++-.
T Consensus 854 LklLlp~LE~~i~eG~-~d~a~hnAla--KIyIDSNNnPE--~fLkeN~----yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 854 LKLLLPWLESLIQEGS-QDPATHNALA--KIYIDSNNNPE--RFLKENP----YYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HHHHHHHHHHHHhccC-cchHHHhhhh--heeecCCCChH--HhcccCC----cchhhHHhhhhcccCCceEEEeecccC
Confidence 4444455555666675 4889999999 88887665432 2222221 111223444555555544433332211
Q ss_pred HC----CC----------------CCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCC--CChhHHHHHHHHHHhCCC
Q 043060 123 LS----GF----------------VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE--SDPFVHTSLINMYAQNGE 180 (707)
Q Consensus 123 ~~----g~----------------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~ 180 (707)
.. .+ +.|...|..++. ..-.--+++.++.+..+++ .|+.-.+.-+.++...+-
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~-----e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadL 999 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLN-----EENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADL 999 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHh-----ccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCC
Confidence 00 00 123333333332 1112234566666666653 355566667777777787
Q ss_pred hhHHHHHHhcCCC-CCee-----hHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHH
Q 043060 181 LESARLVFNKSSL-RDAV-----SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254 (707)
Q Consensus 181 ~~~A~~~f~~~~~-~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 254 (707)
..+-.++++++.- +++. .-|.||-...+ -+..+..+..+++ .+... -.+...+...+-+++|..
T Consensus 1000 p~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rL----dnyDa-----~~ia~iai~~~LyEEAF~ 1069 (1666)
T KOG0985|consen 1000 PNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRL----DNYDA-----PDIAEIAIENQLYEEAFA 1069 (1666)
T ss_pred cHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHh----ccCCc-----hhHHHHHhhhhHHHHHHH
Confidence 8888888877652 2222 23333333333 3445666666665 22111 122333445555666766
Q ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh
Q 043060 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334 (707)
Q Consensus 255 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 334 (707)
+|+.. ..+....+.|++ ..+.++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+. .|+
T Consensus 1070 ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDp 1133 (1666)
T KOG0985|consen 1070 IFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDP 1133 (1666)
T ss_pred HHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCc
Confidence 66543 334444444443 345677777777666554 56888888888888888888877553 355
Q ss_pred hhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC----------------
Q 043060 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---------------- 398 (707)
Q Consensus 335 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---------------- 398 (707)
..|.-++..+.+.|.++.-...+..+.+...++ .+-+.|+-+|++.+++.+-++++..-..
T Consensus 1134 s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~---~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y 1210 (1666)
T KOG0985|consen 1134 SNYLEVIDVASRTGKYEDLVKYLLMARKKVREP---YIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMY 1210 (1666)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc---cchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhh
Confidence 678888888888888888888777777665543 3456788888888888777766542110
Q ss_pred -------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC
Q 043060 399 -------KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK 471 (707)
Q Consensus 399 -------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 471 (707)
.++.-|.-+...+...|++..|...-++. .+..||..+-.+|...+.+.-|. |.. .++...
T Consensus 1211 ~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCG-L~iivh 1278 (1666)
T KOG0985|consen 1211 EAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICG-LNIIVH 1278 (1666)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcC-ceEEEe
Confidence 02334555556666666666665554432 23446666666776665554432 111 122223
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhh
Q 043060 472 LQHYGCMVDLLGRAGLFDEAEALLKTM-EMK-PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549 (707)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 549 (707)
..-..-|+..|-..|-++|-+.+++.. +.+ .....|.-|.-.|.+-+ +++-.+.++-.... ...--++.++.
T Consensus 1279 adeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsR-----vNipKviRA~e 1352 (1666)
T KOG0985|consen 1279 ADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSR-----VNIPKVIRAAE 1352 (1666)
T ss_pred hHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh-----cchHHHHHHHH
Confidence 444556778888888888888888764 544 23455655555555543 44444433333221 01123556666
Q ss_pred hcCChhhHHHHHHHHhh
Q 043060 550 GAGRWDDVATIRTRLND 566 (707)
Q Consensus 550 ~~g~~~~a~~~~~~m~~ 566 (707)
++..|.|..=++.+-.+
T Consensus 1353 qahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1353 QAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 77777777666655443
No 96
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=0.00015 Score=74.28 Aligned_cols=412 Identities=12% Similarity=0.068 Sum_probs=243.9
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHH--hCCChhH
Q 043060 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA--SRGYLDD 214 (707)
Q Consensus 137 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~--~~g~~~~ 214 (707)
++.+...+++++|.+....++..+ +.|...+..=+-+..+.+++++|+.+.+.-...+....-.+=.+|| +.+..++
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 344567889999999999998876 5566667777777889999999997776544221111111234444 6889999
Q ss_pred HHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043060 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS-NLHVTNALIDMYSKCGDLVKARDLFES 293 (707)
Q Consensus 215 A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 293 (707)
|+..++-... .|..+...-...|-+.|++++|..+|..+.+++.+. +...-..++..-. .-.+. +.+.
T Consensus 98 alk~~~~~~~------~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~ 166 (652)
T KOG2376|consen 98 ALKTLKGLDR------LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQS 166 (652)
T ss_pred HHHHHhcccc------cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHh
Confidence 9999884421 123355566677889999999999999999886432 2222222322211 11121 3444
Q ss_pred cCCCChhhHHHH---HHHHHhcCCHHHHHHHHHHHhhcC-------------CCCChhhH-HhHHHHHhccCCchHHHHH
Q 043060 294 IEKRDVISWNVM---IGGYTHTSDYKEALMLFRQMLQSN-------------IEPNDVTF-LSVLPACAYLGALDLGKWI 356 (707)
Q Consensus 294 ~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~~t~-~~ll~~~~~~~~~~~a~~~ 356 (707)
.+.....+|..+ ...+...|++.+|++++....+.+ +.-+..+. ..+.-.+-..|+-+++.++
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 444333344433 456778999999999999983211 11111111 1223345678999999999
Q ss_pred HHHHHHhCCCC-C-cHHHHhHHhhHHHhcCCHH-HHHHHHhcCCCCChH--------------HH-HHHHHHHHHcCCHH
Q 043060 357 HAYIDKNHQKL-N-NVSLWTSLIDMYAKCGNIK-AAEQVFDGMGYKTLA--------------SW-NAMISGLAMHGKAD 418 (707)
Q Consensus 357 ~~~~~~~~~~~-~-~~~~~~~li~~y~~~g~~~-~A~~~~~~~~~~~~~--------------~~-~~li~~~~~~g~~~ 418 (707)
+..+++..+.. | -...-|.|+.+-....-++ .++..++........ .. +.++..| .+..+
T Consensus 247 y~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~ 324 (652)
T KOG2376|consen 247 YVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMD 324 (652)
T ss_pred HHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHH
Confidence 99999877652 1 1123344443322211111 233334333222111 11 1222222 22233
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhc--cCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHH
Q 043060 419 KALSLFSRMIGEGLQPDDITFVGVLSACNH--AGLLDIGRQYFNAMIQDYKISPK-LQHYGCMVDLLGRAGLFDEAEALL 495 (707)
Q Consensus 419 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 495 (707)
.+.++..... +..|.. .+..++..+.+ ......+.+++....+ +.+-. ....-.++......|+++.|.+++
T Consensus 325 q~r~~~a~lp--~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 325 QVRELSASLP--GMSPES-LFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred HHHHHHHhCC--ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3333333222 133433 34444444432 2256777777777655 33222 445566778888999999999999
Q ss_pred H--------hC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcc----CC---CCchhHHHHHHHhhhcCChhhHHH
Q 043060 496 K--------TM-EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL----EP---ENPGAYVLLSNMYAGAGRWDDVAT 559 (707)
Q Consensus 496 ~--------~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~p---~~~~~~~~l~~~~~~~g~~~~a~~ 559 (707)
. .+ .+.-.+.+..++...+.+.++.+.|..++.+++.- .+ .-...+..++..-.+.|+-++|..
T Consensus 400 ~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred HHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 8 33 23333566677788888888888888888887752 12 222345556666777899999999
Q ss_pred HHHHHhhC
Q 043060 560 IRTRLNDK 567 (707)
Q Consensus 560 ~~~~m~~~ 567 (707)
+++++.+.
T Consensus 480 ~leel~k~ 487 (652)
T KOG2376|consen 480 LLEELVKF 487 (652)
T ss_pred HHHHHHHh
Confidence 99999874
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.76 E-value=1.3e-05 Score=83.15 Aligned_cols=294 Identities=13% Similarity=0.004 Sum_probs=160.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChh---hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh-hhHHhHHH
Q 043060 270 VTNALIDMYSKCGDLVKARDLFESIEK---RDVI---SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND-VTFLSVLP 342 (707)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 342 (707)
.+..+...|...|+.+.+.+.+....+ .+.. ........+...|++++|.+.+++..+.. |+. ..+.. ..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~-~~ 84 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH-hH
Confidence 344444455555555554444443321 1111 12222334556777777777777766642 322 22221 11
Q ss_pred HHh----ccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcC
Q 043060 343 ACA----YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHG 415 (707)
Q Consensus 343 ~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 415 (707)
.+. ..+..+.+.+..... ....+........+...+...|++++|.+.+++.. ..+...+..+...|...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 111 223344444443331 11112133444556667778888888888887663 334566777777888888
Q ss_pred CHHHHHHHHHHHHHCCC-CCCH--hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH-H--HHHHHHHHcCCHH
Q 043060 416 KADKALSLFSRMIGEGL-QPDD--ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY-G--CMVDLLGRAGLFD 489 (707)
Q Consensus 416 ~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~ 489 (707)
++++|+..+++...... .|+. ..+..+...+...|++++|..+++.........+..... + .++..+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 88888888887776321 1222 134456677778888888888888764321111222111 1 2233333444332
Q ss_pred HHHHH---HHhC-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHccC-C--------CCchhHHHHHHHhhhcCC
Q 043060 490 EAEAL---LKTM-EMKP---DAAIWTSLLGACRVHGRLELGESVAKHLLELE-P--------ENPGAYVLLSNMYAGAGR 553 (707)
Q Consensus 490 ~A~~~---~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~ 553 (707)
.+.+. .... +..| ..........++...|+.+.|...++.+.... . .........+.++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 22222 1111 1101 12223356667788899999999888876532 1 134455677788899999
Q ss_pred hhhHHHHHHHHhhCC
Q 043060 554 WDDVATIRTRLNDKG 568 (707)
Q Consensus 554 ~~~a~~~~~~m~~~~ 568 (707)
+++|.+.+......+
T Consensus 323 ~~~A~~~L~~al~~a 337 (355)
T cd05804 323 YATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887654
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.76 E-value=3.2e-07 Score=90.13 Aligned_cols=190 Identities=12% Similarity=0.106 Sum_probs=130.0
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCC-CC---ChHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMG-YK---TLASWNA-MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~---~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 443 (707)
.......+...+...++-+.+..-+++.. .. +-.++.. ....+...|++++|++++++- .+.......+
T Consensus 65 ~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~V 138 (290)
T PF04733_consen 65 ELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAV 138 (290)
T ss_dssp CCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHH
T ss_pred hHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHH
Confidence 34444444433333344555555554432 22 1122222 223455679999999988642 3445666778
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH----HHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 043060 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL----LGRAGLFDEAEALLKTM--EMKPDAAIWTSLLGACRVH 517 (707)
Q Consensus 444 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~----~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~ 517 (707)
..+.+.++++.|.+.++.|.+ +..|. +...+..+ +.-.+.+.+|..+|+++ ...+++.+.+.+..+....
T Consensus 139 qi~L~~~R~dlA~k~l~~~~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~ 214 (290)
T PF04733_consen 139 QILLKMNRPDLAEKELKNMQQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL 214 (290)
T ss_dssp HHHHHTT-HHHHHHHHHHHHC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 899999999999999999964 33443 33334433 33344799999999998 3346788899999999999
Q ss_pred CChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCCh-hhHHHHHHHHhhCC
Q 043060 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW-DDVATIRTRLNDKG 568 (707)
Q Consensus 518 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~~ 568 (707)
|++++|+++++++++.+|.++.+...++.+....|+. +.+.+++.++....
T Consensus 215 ~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 215 GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999 66778888877643
No 99
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.76 E-value=3.3e-05 Score=80.38 Aligned_cols=178 Identities=18% Similarity=0.236 Sum_probs=98.6
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD--ITFVGVLSAC 446 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~ 446 (707)
....|-+-..-.-+.|++.+|++++-.+..|+. .|..|-++|..++.+++..+- .|+. .|-..+..-+
T Consensus 823 t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~ 892 (1636)
T KOG3616|consen 823 TISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKEL 892 (1636)
T ss_pred HHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHH
Confidence 333444444455566777777777766666653 255666777777776666543 3332 2555556666
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-C--C-HHHHHH------HHHHHHh
Q 043060 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK-P--D-AAIWTS------LLGACRV 516 (707)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p--~-~~~~~~------ll~~~~~ 516 (707)
...|++..|..-|-+.- -|.+-+++|-..+.+++|.++-+.-+-. . . ...|.- -+..+.+
T Consensus 893 e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk 962 (1636)
T KOG3616|consen 893 EAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNK 962 (1636)
T ss_pred HhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHh
Confidence 66777777776665442 2455666777777777777766654211 0 0 122221 1122333
Q ss_pred cCChhHHHH-------------HHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 517 HGRLELGES-------------VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 517 ~g~~~~A~~-------------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
+|-++.|.. +.+-..+ ..-+.++..++-.+...|++++|.+-+-+..+.+
T Consensus 963 ~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 963 HGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 444444333 3222222 2234566777777788888888877776665544
No 100
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.76 E-value=7.7e-07 Score=98.60 Aligned_cols=208 Identities=15% Similarity=0.184 Sum_probs=176.9
Q ss_pred HHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043060 356 IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK--------TLASWNAMISGLAMHGKADKALSLFSRM 427 (707)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m 427 (707)
=|.+.+...+. +...|-..|......+++++|++++++.... -...|.++++.-...|.-+...++|+++
T Consensus 1446 DferlvrssPN--SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1446 DFERLVRSSPN--SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHhcCCC--cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 34455555554 6778888899999999999999999987421 3358999999888899889999999999
Q ss_pred HHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---C
Q 043060 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP---D 503 (707)
Q Consensus 428 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~ 503 (707)
.+ .--....|..|...|.+.+.+++|-++++.|.++++ .....|...++.+.++.+-++|..++.+. ..-| .
T Consensus 1524 cq--ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1524 CQ--YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HH--hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 88 333345789999999999999999999999999776 56778999999999999999999999885 3333 3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 504 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.....-.+..-.+.|+.+.+..+|+..+.-.|.....|..++++-.+.|..+.++.+|+++...++
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 556666777778999999999999999999999999999999999999999999999999998877
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72 E-value=1.3e-06 Score=84.45 Aligned_cols=180 Identities=13% Similarity=0.066 Sum_probs=116.5
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCCC--C-Ch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh----H
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGY--K-TL---ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI----T 438 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 438 (707)
....+..++..|.+.|++++|...|+++.. | +. ..|..+..++.+.|++++|+..|+++.+ ..|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence 556666777777777888888777776532 1 21 3566677777777788888888887776 344332 3
Q ss_pred HHHHHHHHhcc--------CCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH
Q 043060 439 FVGVLSACNHA--------GLLDIGRQYFNAMIQDYKISPKL-QHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509 (707)
Q Consensus 439 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 509 (707)
+..+..++... |+.++|.+.|+.+.+.+ |+. ..+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY---PNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC---CCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 34444444443 56677777777766532 222 222111111 0000000 011225
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCC---chhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 510 LLGACRVHGRLELGESVAKHLLELEPEN---PGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 510 ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
+...+...|+++.|...++++++..|++ +.++..++.+|.+.|++++|..+++.+..+.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5667889999999999999999987654 4789999999999999999999999887653
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=0.00038 Score=73.80 Aligned_cols=205 Identities=15% Similarity=0.122 Sum_probs=144.9
Q ss_pred CchhhhhhhchhhcccCCCChHHHHHHHhcCCC-----------CCc-chHHHHHHHHHcCCCchHHHHHHHHHHHCCCC
Q 043060 60 NTQFALSKLIEICAVSPFGDLSYALLVFETIRE-----------PNQ-VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV 127 (707)
Q Consensus 60 ~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~-----------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 127 (707)
.+..+|..+. +++.+..+++-|.-.+-.|.+ .|. ..=..+.-.-.+.|..++|+.+|++-.+.
T Consensus 755 kS~~vW~nmA--~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~--- 829 (1416)
T KOG3617|consen 755 KSDSVWDNMA--SMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY--- 829 (1416)
T ss_pred hhhHHHHHHH--HHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH---
Confidence 3567899999 999999999988888877753 111 11111111224668899999999988763
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCC--------------
Q 043060 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL-------------- 193 (707)
Q Consensus 128 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-------------- 193 (707)
..|=+.|-..|.+++|.++-+.--+..+. .+|.....-+-..++.+.|++.|++...
T Consensus 830 ------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~ 900 (1416)
T KOG3617|consen 830 ------DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPK 900 (1416)
T ss_pred ------HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChH
Confidence 33445566789999999887653322222 3455555555667888888888875532
Q ss_pred ---------CCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCC
Q 043060 194 ---------RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264 (707)
Q Consensus 194 ---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 264 (707)
+|...|.-....+-..|+.+.|+.+|.... -|-++++..+-.|+.++|-++-++
T Consensus 901 ~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----------D~fs~VrI~C~qGk~~kAa~iA~e------ 963 (1416)
T KOG3617|consen 901 QIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----------DYFSMVRIKCIQGKTDKAARIAEE------ 963 (1416)
T ss_pred HHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----------hhhhheeeEeeccCchHHHHHHHh------
Confidence 244455555555566899999999998873 267778888889999999888765
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043060 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIE 295 (707)
Q Consensus 265 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 295 (707)
..|....--|.++|-..|++.+|..+|-+..
T Consensus 964 sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 964 SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3466777789999999999999999998754
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.69 E-value=1.7e-06 Score=80.24 Aligned_cols=148 Identities=11% Similarity=0.137 Sum_probs=115.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC
Q 043060 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487 (707)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 487 (707)
+..|...|+++.+....+++.. |. ..+...++.+++...++...+ .-+.+...|..|...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3457777887776444433221 11 012235667777777777765 445688899999999999999
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHH-HhcCC--hhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHH
Q 043060 488 FDEAEALLKTM-EMKPD-AAIWTSLLGAC-RVHGR--LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562 (707)
Q Consensus 488 ~~~A~~~~~~~-~~~p~-~~~~~~ll~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 562 (707)
+++|...+++. ...|+ ...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|+..++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999986 56675 78888888864 67777 5999999999999999999999999999999999999999999
Q ss_pred HHhhCCC
Q 043060 563 RLNDKGM 569 (707)
Q Consensus 563 ~m~~~~~ 569 (707)
++.+...
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9987654
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.67 E-value=5.4e-07 Score=78.96 Aligned_cols=122 Identities=7% Similarity=0.003 Sum_probs=79.0
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 043060 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EM 500 (707)
Q Consensus 422 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 500 (707)
.+|++.++ +.|+. +..+..++...|++++|...|+.... --+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44555555 44553 33445566667777777777776654 23335566667777777777777777777765 44
Q ss_pred CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhh
Q 043060 501 KPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549 (707)
Q Consensus 501 ~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 549 (707)
.|+ ...|..+..++...|+.++|+..++++++..|+++..+...+++..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 453 6677777777777777777777777777777777777666655543
No 105
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.67 E-value=3.1e-05 Score=83.63 Aligned_cols=458 Identities=15% Similarity=0.057 Sum_probs=231.3
Q ss_pred hHHHHHHHhcCCCCCc---chHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHH
Q 043060 80 LSYALLVFETIREPNQ---VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHV 156 (707)
Q Consensus 80 ~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 156 (707)
...|...|-+..+.|+ ..|..|...|...-+...|...|....+.. ..|..........++...+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 4455555544433332 357777777777667778888888777653 335566777778888888888888773222
Q ss_pred HHhCC-CCChhHHHHHHHHHHhCCChhHHHHHHhcCC---CCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCC
Q 043060 157 LKLGL-ESDPFVHTSLINMYAQNGELESARLVFNKSS---LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPN 232 (707)
Q Consensus 157 ~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~ 232 (707)
-+... ..-..-|..+.-.|.+.++...|..-|+... ..|...|..+..+|...|++..|+++|.+. .-+.|+
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA----s~LrP~ 628 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKA----SLLRPL 628 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhh----HhcCcH
Confidence 21110 0111223334445667788888888887543 447888999999999999999999999887 445665
Q ss_pred HhhHHHHHH--HHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHh-------cCCHHHHHHHHHhcCC-------
Q 043060 233 ESTVVTVLS--ACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK-------CGDLVKARDLFESIEK------- 296 (707)
Q Consensus 233 ~~t~~~ll~--~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~~~A~~~~~~~~~------- 296 (707)
. +|..... .-+..|.+.++...++.+...- .......+.|...+.+ .|-...|...|+.-.+
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 3 2332222 2356788888888888776531 1112222333333332 2333333333332211
Q ss_pred ----CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCc---h---HHHHHHHHHHHhCCC
Q 043060 297 ----RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL---D---LGKWIHAYIDKNHQK 366 (707)
Q Consensus 297 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~ 366 (707)
.+...|-.+- .|..+|-+.. .. .|+......+..-.-..+.. | .|.+.+-.-.+ ..
T Consensus 707 h~~~~~~~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~ 772 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LA 772 (1238)
T ss_pred HhhhhhHHHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hh
Confidence 1222222222 2223333322 00 12211111111112222221 1 01111111011 11
Q ss_pred CCcHHHHhHHhhHHHh----cC----CHHHHHHHHhcC---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-
Q 043060 367 LNNVSLWTSLIDMYAK----CG----NIKAAEQVFDGM---GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP- 434 (707)
Q Consensus 367 ~~~~~~~~~li~~y~~----~g----~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 434 (707)
. +...|..|+.-|.+ +| +...|...+.+. ...+...||.|.-. ...|.+.-|...|-+-.. ..|
T Consensus 773 ~-~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~--sep~ 848 (1238)
T KOG1127|consen 773 I-HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRF--SEPT 848 (1238)
T ss_pred h-ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhh--cccc
Confidence 1 22223333333322 11 223455555543 23455667766554 444555555555544444 233
Q ss_pred CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHHH
Q 043060 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-------EMKPDAAIW 507 (707)
Q Consensus 435 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~ 507 (707)
...+|..+.-.|....+++.|...|..... -.+.+...|-...-.....|+.-++..+|..- +--|+..-|
T Consensus 849 ~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw 926 (1238)
T KOG1127|consen 849 CHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW 926 (1238)
T ss_pred chhheeccceeEEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH
Confidence 334666666666667777777777766542 22224445544444445566666666666541 122444444
Q ss_pred HHHHHHHHhcCChhHHHH----------HHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHH
Q 043060 508 TSLLGACRVHGRLELGES----------VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564 (707)
Q Consensus 508 ~~ll~~~~~~g~~~~A~~----------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 564 (707)
..-..-...+|+.++-+. ..++.+...|+...+|...+....+.+.+.+|.+...+.
T Consensus 927 ~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 927 LCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 443333444444443332 333444455666666666666666666666666655544
No 106
>PLN02789 farnesyltranstransferase
Probab=98.66 E-value=1e-05 Score=80.64 Aligned_cols=209 Identities=11% Similarity=0.090 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcC-CHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCH--HHHHHHH
Q 043060 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG-NIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKA--DKALSLF 424 (707)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~~~ 424 (707)
+.|......+++..+. +..+|+....++.+.| .+++++..++++. .++..+|+.....+.+.|+. ++++.++
T Consensus 54 erAL~lt~~aI~lnP~--~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~ 131 (320)
T PLN02789 54 PRALDLTADVIRLNPG--NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFT 131 (320)
T ss_pred HHHHHHHHHHHHHCch--hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHH
Confidence 3333334444433333 3334444444444444 4566666665543 23444565554444444542 5566777
Q ss_pred HHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc---CCH----HHHHHHHH
Q 043060 425 SRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA---GLF----DEAEALLK 496 (707)
Q Consensus 425 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~----~~A~~~~~ 496 (707)
+++++ ..|+. .++.....++.+.|+++++++.++.+++. -+-+...|+....++.+. |.. +++++...
T Consensus 132 ~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 132 RKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 77766 44543 36666666666667777777777777652 223445555555444443 222 45666654
Q ss_pred h-CCCCCC-HHHHHHHHHHHHhc----CChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcC------------------
Q 043060 497 T-MEMKPD-AAIWTSLLGACRVH----GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG------------------ 552 (707)
Q Consensus 497 ~-~~~~p~-~~~~~~ll~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------ 552 (707)
+ +...|+ ...|+.+...+... ++..+|...+.++++.+|+++.+...|+++|+...
T Consensus 208 ~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 287 (320)
T PLN02789 208 DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELS 287 (320)
T ss_pred HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccc
Confidence 4 456675 78899888888773 34567889999999999999999999999998743
Q ss_pred ChhhHHHHHHHHh
Q 043060 553 RWDDVATIRTRLN 565 (707)
Q Consensus 553 ~~~~a~~~~~~m~ 565 (707)
..++|.++++.+.
T Consensus 288 ~~~~a~~~~~~l~ 300 (320)
T PLN02789 288 DSTLAQAVCSELE 300 (320)
T ss_pred cHHHHHHHHHHHH
Confidence 2366777777774
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.63 E-value=1.7e-06 Score=75.86 Aligned_cols=96 Identities=10% Similarity=-0.059 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhc
Q 043060 474 HYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA 551 (707)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 551 (707)
.+..+...+...|++++|.+.|+.. ...|+ ...|..+..++...|++++|...|+++++++|+++.++..++.++...
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 4556788899999999999999986 56665 889999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHhhCCC
Q 043060 552 GRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 552 g~~~~a~~~~~~m~~~~~ 569 (707)
|++++|+..+++..+...
T Consensus 106 g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 999999999999987654
No 108
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.62 E-value=9.5e-05 Score=76.65 Aligned_cols=191 Identities=12% Similarity=0.061 Sum_probs=105.5
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCC-----Ch--HHHHHHHHHHHHc
Q 043060 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-----TL--ASWNAMISGLAMH 414 (707)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~~~ 414 (707)
..+...|+++.|...++...+..+. +...+..+...|...|++++|...+++.... +. ..|..+...+...
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~--~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPD--DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 3444555555555555555555444 4556677777777888888888887765321 21 2455677778888
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HhHH-H--HHHHHHhccCCHHHHHHH--HHHhHHhcCC-CCChHHHHHHHHHHHHcCC
Q 043060 415 GKADKALSLFSRMIGEGLQPD-DITF-V--GVLSACNHAGLLDIGRQY--FNAMIQDYKI-SPKLQHYGCMVDLLGRAGL 487 (707)
Q Consensus 415 g~~~~A~~~~~~m~~~g~~p~-~~t~-~--~ll~a~~~~g~~~~a~~~--~~~~~~~~~~-~p~~~~~~~li~~~~~~g~ 487 (707)
|++++|+.+|++.......+. .... + .++.-+...|..+.+.++ .......... ..........+.++...|+
T Consensus 200 G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 279 (355)
T cd05804 200 GDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGD 279 (355)
T ss_pred CCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCC
Confidence 888888888888764221112 1111 1 223333334433333332 1111111000 1111222245666778889
Q ss_pred HHHHHHHHHhCC--CCC---C------HHHHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 043060 488 FDEAEALLKTME--MKP---D------AAIWTSLLGACRVHGRLELGESVAKHLLELE 534 (707)
Q Consensus 488 ~~~A~~~~~~~~--~~p---~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 534 (707)
.++|..+++.+. .+. . ........-++...|+.+.|.+.+..++.+.
T Consensus 280 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 280 KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999888761 111 1 1222233345568899999999998887653
No 109
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=3.7e-06 Score=85.55 Aligned_cols=217 Identities=12% Similarity=0.100 Sum_probs=167.9
Q ss_pred HhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHH
Q 043060 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR---DVISWNVMIGGYTHTSDYKEAL 319 (707)
Q Consensus 243 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 319 (707)
+.+.|++..|.-.|+..++.. +.+...|..|.......++-..|+..+++..+- |..+.-.|...|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 357788999999999988875 567889999999999999999999998887653 5677888888999999999999
Q ss_pred HHHHHHhhcCCC--------CChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHH
Q 043060 320 MLFRQMLQSNIE--------PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391 (707)
Q Consensus 320 ~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 391 (707)
..|++.+....+ ++..+-.. ..+.....+....++|-.+........|+.+...|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999998654211 00000000 11122223344555665555555543388999999999999999999999
Q ss_pred HHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHH
Q 043060 392 VFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 392 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
.|+... ..|...||-|...++...+.++|+..|++.++ ++|+-+ ....|.-+|...|.+++|...|-.++.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999774 34778999999999999999999999999999 899876 556677789999999999988776543
No 110
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.57 E-value=9.2e-05 Score=70.54 Aligned_cols=307 Identities=13% Similarity=0.097 Sum_probs=190.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHH---HHHHhCCChhHHHHHHHhCccccCCCCCCHhhH-HHHHHHH
Q 043060 168 HTSLINMYAQNGELESARLVFNKSSLRDAVSYTALI---TGYASRGYLDDARQLFDEMPIREENFVPNESTV-VTVLSAC 243 (707)
Q Consensus 168 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~-~~ll~~~ 243 (707)
.--|.+.+...|++.+|+.-|....+-|+..|.++. ..|...|+...|+.=|.+.+ .++||-..- ..--..+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVl----elKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVL----ELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHH----hcCccHHHHHHHhchhh
Confidence 334555666678888888888877777777776664 46777777777777777763 356663221 1112234
Q ss_pred hccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043060 244 AHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFR 323 (707)
Q Consensus 244 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 323 (707)
.+.|.++.|..-|+.+++.....+. ...++.+.--.++-+ .....+..+...|+...|++...
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e~~------------~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGL-----VLEAQSKLALIQEHW------------VLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcch-----hHHHHHHHHhHHHHH------------HHHHHHHHHhcCCchhhHHHHHH
Confidence 4666666666666666665321100 001111111111111 11123444556777777777777
Q ss_pred HHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChH-
Q 043060 324 QMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA- 402 (707)
Q Consensus 324 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~- 402 (707)
.+++.. +.|...+..-..+|...|.+..|+.-+..+.+...+ +.....-+...+...|+.+.++...++..+-|+.
T Consensus 180 ~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D--nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdH 256 (504)
T KOG0624|consen 180 HLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD--NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDH 256 (504)
T ss_pred HHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc--chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcch
Confidence 777642 235555555566677777777776666666555544 5666666777777888888887777765432221
Q ss_pred -----HHHHH---------HHHHHHcCCHHHHHHHHHHHHHCCCCCC--HhH---HHHHHHHHhccCCHHHHHHHHHHhH
Q 043060 403 -----SWNAM---------ISGLAMHGKADKALSLFSRMIGEGLQPD--DIT---FVGVLSACNHAGLLDIGRQYFNAMI 463 (707)
Q Consensus 403 -----~~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t---~~~ll~a~~~~g~~~~a~~~~~~~~ 463 (707)
.|..+ +......+++.++++..+...+. .|. .++ +..+-.++...|++.+|++...++.
T Consensus 257 K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 257 KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 12111 12345678899999999988874 454 233 3344556678899999999999887
Q ss_pred HhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 043060 464 QDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD 503 (707)
Q Consensus 464 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 503 (707)
.+.| |+.++.--.++|.-...+++|+.-|+.. ...++
T Consensus 335 ---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 335 ---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred ---hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 4556 4888888889999999999999999987 44444
No 111
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.55 E-value=1.8e-06 Score=74.09 Aligned_cols=119 Identities=10% Similarity=0.014 Sum_probs=98.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 548 (707)
+....-.+...+...|++++|.++|+-. ...|. ..-|..|...|...|++++|+..|.++..++|++|.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3444556677788999999999999986 55665 788999999999999999999999999999999999999999999
Q ss_pred hhcCChhhHHHHHHHHhhCCCccCCcccEEeECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHH
Q 043060 549 AGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE 612 (707)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 612 (707)
...|+.+.|++.|+......- .+|+..++.+..+.....+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~-----------------------~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICG-----------------------EVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhc-----------------------cChhHHHHHHHHHHHHHHhh
Confidence 999999999999998876321 35666666666665555544
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=1.8e-05 Score=82.89 Aligned_cols=216 Identities=15% Similarity=0.151 Sum_probs=168.4
Q ss_pred CCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHH
Q 043060 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343 (707)
Q Consensus 264 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 343 (707)
++|-...-..+...+.++|-...|..+|+++ ..|...|.+|+..|+..+|..+..+-.+ -+||+..|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4555566778899999999999999999984 5788899999999999999999988887 47888888888877
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHH
Q 043060 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKADKA 420 (707)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 420 (707)
..+..-+++|.++.+..... .-..+.....+.++++++.+.|+.-.. --..+|-....+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 77766677777777655332 222233333447889999999986433 3456888888888899999999
Q ss_pred HHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043060 421 LSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498 (707)
Q Consensus 421 ~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 498 (707)
.+.|..-.. ..||.. .|+.+-.+|.+.++-.+|...+.+..+- + ..+...|-..+-...+.|.+++|++.+.++
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999998888 788877 7999999999999999999999888763 3 334445555566677889999999988876
No 113
>PF12854 PPR_1: PPR repeat
Probab=98.50 E-value=1.8e-07 Score=58.21 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=25.1
Q ss_pred CCCCChhHHHHHHHHHHhCCChhHHHHHHhcCC
Q 043060 160 GLESDPFVHTSLINMYAQNGELESARLVFNKSS 192 (707)
Q Consensus 160 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 192 (707)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777764
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.49 E-value=2.5e-05 Score=87.07 Aligned_cols=212 Identities=16% Similarity=0.189 Sum_probs=171.9
Q ss_pred CHhhHHHHHHHHhccCCchHHHHHHHHHHHcC-C---CchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C-hhhHHHH
Q 043060 232 NESTVVTVLSACAHMGSLELGNWVCSLIEGHG-L---GSNLHVTNALIDMYSKCGDLVKARDLFESIEKR-D-VISWNVM 305 (707)
Q Consensus 232 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~l 305 (707)
+...|...|......++++.|+++.+++++.= + .--..+|.+++++-..-|.-+...++|++..+- | ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34567777888888899999999988887641 1 113468889999888889889999999998763 3 3568889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCC
Q 043060 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385 (707)
Q Consensus 306 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 385 (707)
...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.++++.-+.........-.+++-.++|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 99999999999999999999875 33456678888888889888899999999998876665577778888899999999
Q ss_pred HHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh--HHHHHHH
Q 043060 386 IKAAEQVFDGMGY---KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI--TFVGVLS 444 (707)
Q Consensus 386 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~ 444 (707)
.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-.. .|...+.
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 9999999998743 356689999999999999999999999999988877653 3444443
No 115
>PF12854 PPR_1: PPR repeat
Probab=98.48 E-value=2.4e-07 Score=57.67 Aligned_cols=33 Identities=33% Similarity=0.565 Sum_probs=26.2
Q ss_pred CCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043060 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIE 295 (707)
Q Consensus 263 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 295 (707)
|+.||..+||.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888887774
No 116
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=2.9e-05 Score=72.38 Aligned_cols=304 Identities=14% Similarity=0.107 Sum_probs=185.8
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhhHHH-HHHHHHh
Q 043060 235 TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR--DVISWNV-MIGGYTH 311 (707)
Q Consensus 235 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~-li~~~~~ 311 (707)
-+.+++..+.+..++..+.+++..-.++. +.+....+.|..+|....++..|-..|+++..- ...-|.. -...+-+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 35555555666667777777766655552 225556667777777788888888888776542 2222221 2345556
Q ss_pred cCCHHHHHHHHHHHhhcCCCCChhhHHhHHHH--HhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHH
Q 043060 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA--CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389 (707)
Q Consensus 312 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 389 (707)
.+.+.+|+++...|.+. |+-..-..-+.+ ....+++..++.+.+.....+ +..+.+.......+.|+.+.|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en----~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC----ccchhccchheeeccccHHHH
Confidence 77888888888777653 222111111111 234566666666655543222 444555566666788888888
Q ss_pred HHHHhcCCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 043060 390 EQVFDGMGY----KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465 (707)
Q Consensus 390 ~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 465 (707)
.+-|+...+ .....||..+. ..+.|+++.|+++..++++.|++-.+..- .|...++..+ +.
T Consensus 164 vqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElg---------IGm~tegiDv-----rs 228 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELG---------IGMTTEGIDV-----RS 228 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccC---------ccceeccCch-----hc
Confidence 888887643 24456665443 44567888888888888887764322110 0111010000 00
Q ss_pred cCCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 043060 466 YKISPK-------LQHYGCMVDLLGRAGLFDEAEALLKTME----MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534 (707)
Q Consensus 466 ~~~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 534 (707)
--.|- +..+|.-...+.+.|+++.|.+-+..|| .+.|++|...+.-. -..+++..+.+-+.-+++++
T Consensus 229 -vgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 229 -VGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred -ccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC
Confidence 00011 1233334445678999999999999994 33567777665432 23456777777788888999
Q ss_pred CCCchhHHHHHHHhhhcCChhhHHHHHHH
Q 043060 535 PENPGAYVLLSNMYAGAGRWDDVATIRTR 563 (707)
Q Consensus 535 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 563 (707)
|-.+.++..++-+|++..-++-|..++-+
T Consensus 307 PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 307 PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 98889999999999999999999887755
No 117
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.47 E-value=0.0023 Score=65.24 Aligned_cols=130 Identities=15% Similarity=0.174 Sum_probs=85.3
Q ss_pred CCchhhhhhhchhhcccCCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHH
Q 043060 59 HNTQFALSKLIEICAVSPFGDLSYALLVFETIRE--P-NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPF 135 (707)
Q Consensus 59 ~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 135 (707)
+.|..+|+.|| .-+. ....++++..++++.. | ....|..-|..-.+.++++....+|.+-+..- .+...|..
T Consensus 17 P~di~sw~~li--re~q-t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLI--REAQ-TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKL 91 (656)
T ss_pred CccHHHHHHHH--HHHc-cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHH
Confidence 45888999999 5554 4499999999999875 4 44579999999999999999999999988653 34555555
Q ss_pred HHHHHhc-cCChHHH----HHHHHHH-HHhCCCCC-hhHHHHHHHHH---------HhCCChhHHHHHHhcCCC
Q 043060 136 ILKSCAK-ISAISEG----KQIHAHV-LKLGLESD-PFVHTSLINMY---------AQNGELESARLVFNKSSL 193 (707)
Q Consensus 136 ll~~~~~-~~~~~~a----~~~~~~~-~~~g~~~~-~~~~~~li~~~---------~~~g~~~~A~~~f~~~~~ 193 (707)
-|.--.+ .+..... .+.++.. .+.|.++- -..|+..+..+ ....+++..+++++++..
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 5443322 2333222 2233332 34454433 23466655543 345577888888887764
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.46 E-value=1.2e-05 Score=77.84 Aligned_cols=183 Identities=14% Similarity=0.025 Sum_probs=130.0
Q ss_pred ChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCc-HHHHhHHhhHHHhcCCHHHHHHHHhcCCCC---ChH---HHH
Q 043060 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNN-VSLWTSLIDMYAKCGNIKAAEQVFDGMGYK---TLA---SWN 405 (707)
Q Consensus 333 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~---~~~ 405 (707)
....+......+...|+++.|...++.+.+..+..+. ...+..+...|.+.|++++|...++++... +.. .+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4456667777888999999999999999988765322 346788899999999999999999987422 222 455
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 043060 406 AMISGLAMH--------GKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477 (707)
Q Consensus 406 ~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 477 (707)
.+..++.+. |++++|++.|+++.. ..|+.......+..... . .... . .....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~---~------~~~~-~--------~~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY---L------RNRL-A--------GKELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH---H------HHHH-H--------HHHHH
Confidence 666666654 789999999999998 56665422111111000 0 0000 0 11225
Q ss_pred HHHHHHHcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 043060 478 MVDLLGRAGLFDEAEALLKTM----EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEP 535 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 535 (707)
+...|.+.|++++|...+++. +-.|. ...|..++.++...|++++|...++.+....|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 667789999999999999886 22343 57888999999999999999998888776555
No 119
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=0.00025 Score=72.04 Aligned_cols=434 Identities=15% Similarity=0.096 Sum_probs=226.9
Q ss_pred cccCCCChHHHHHHHhcCC---CCCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCC-cccHHHHHHHHhccCChHH
Q 043060 73 AVSPFGDLSYALLVFETIR---EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPN-TYTFPFILKSCAKISAISE 148 (707)
Q Consensus 73 ~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~ 148 (707)
+....|+++.|...|-+.. .+|-+.|+--..+|+..|++++|++=-.+-.+. .|+ ...|+-...++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHH
Confidence 3346677888888876643 356667777777788888887777665555443 343 4567777777777788888
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHH-----HHHHHHHhCCChhHHHHHHHhCc
Q 043060 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYT-----ALITGYASRGYLDDARQLFDEMP 223 (707)
Q Consensus 149 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~ 223 (707)
|..-+..-++.. +.+...++.|..++.- + ..+.+.|. +...|. .+.+.+...-.+..-++.+..-+
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~--~-~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLE--D-YAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhH--H-HHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 887777766653 4445566666666611 0 11112221 001111 01111111111111111111110
Q ss_pred cccCCCCCCHhhHHHHHHHHhccCCchHHHHHH-HHH-HHcCCCc----------------------hhHHHHHHHHHHH
Q 043060 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVC-SLI-EGHGLGS----------------------NLHVTNALIDMYS 279 (707)
Q Consensus 224 ~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~-~~~-~~~g~~~----------------------~~~~~~~li~~~~ 279 (707)
..+..... ...++.+.......+.....- ..+ ...+..| -..-...+.++..
T Consensus 160 ---~~l~~~l~-d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaay 235 (539)
T KOG0548|consen 160 ---TSLKLYLN-DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAY 235 (539)
T ss_pred ---Hhhhcccc-cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHH
Confidence 00000000 001111111100000000000 000 0000000 0111233445555
Q ss_pred hcCCHHHHHHHHHhcCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHH
Q 043060 280 KCGDLVKARDLFESIEKR--DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357 (707)
Q Consensus 280 ~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 357 (707)
+..+++.|.+-++...+- ++.-++....+|...|.+.+....-.+..+.|.. ...-|+.+-
T Consensus 236 kkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIa---------------- 298 (539)
T KOG0548|consen 236 KKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIA---------------- 298 (539)
T ss_pred HhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHH----------------
Confidence 555555565555554332 2333444455566666655555554444433311 000011100
Q ss_pred HHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 043060 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK--TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435 (707)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 435 (707)
.....+..+|.+.++.+.|...|.+.... +.. ...+....++++.......- +.|+
T Consensus 299 -------------k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~--~~pe 356 (539)
T KOG0548|consen 299 -------------KALARLGNAYTKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAY--INPE 356 (539)
T ss_pred -------------HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHh--hChh
Confidence 01112445666778888888888764321 211 12233445566655555544 4454
Q ss_pred Hh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 043060 436 DI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLG 512 (707)
Q Consensus 436 ~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~ 512 (707)
.. -...-.+.+.+.|++..|...|.++++. .+-|...|+...-+|.+.|.+..|++=.+.. ...|+ ...|.-=+.
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~ 434 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGA 434 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 42 2222356778889999999999998873 3557788999999999999999988876664 55666 455655566
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHH
Q 043060 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562 (707)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 562 (707)
++....+++.|.+.|++.++.+|++......+..++......+.-.++.+
T Consensus 435 al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~ 484 (539)
T KOG0548|consen 435 ALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKR 484 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 67777899999999999999999988777777777665433333344433
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.45 E-value=1.6e-05 Score=73.72 Aligned_cols=154 Identities=9% Similarity=0.110 Sum_probs=115.4
Q ss_pred HhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHH
Q 043060 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDI 454 (707)
Q Consensus 376 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 454 (707)
-+..|...|+++.+....+.+..+. ..+...++.++++..+++..+ ..|+. ..|..+...|...|++++
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHH
Confidence 3556778888777655543322111 012235667888888888877 45554 478888888999999999
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHH-HHHcCC--HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHH
Q 043060 455 GRQYFNAMIQDYKISPKLQHYGCMVDL-LGRAGL--FDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKH 529 (707)
Q Consensus 455 a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~--~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~ 529 (707)
|...|+...+ -.+.+...+..+..+ +.+.|+ .++|.+++++. ...|+ ..++..+...+...|++++|+..+++
T Consensus 92 A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 92 ALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998875 333477788888886 467787 59999999996 56675 78899999999999999999999999
Q ss_pred HHccCCCCchhH
Q 043060 530 LLELEPENPGAY 541 (707)
Q Consensus 530 ~~~~~p~~~~~~ 541 (707)
++++.|++..-+
T Consensus 170 aL~l~~~~~~r~ 181 (198)
T PRK10370 170 VLDLNSPRVNRT 181 (198)
T ss_pred HHhhCCCCccHH
Confidence 999998765443
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.44 E-value=2.3e-05 Score=86.19 Aligned_cols=141 Identities=13% Similarity=0.125 Sum_probs=117.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 043060 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478 (707)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 478 (707)
++..+-.|.....+.|.+++|..+++...+ +.||.. ....+...+.+.+.+++|...++.... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 567788888888999999999999999998 888887 677788899999999999999998875 344466778888
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHH
Q 043060 479 VDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL 544 (707)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 544 (707)
..++.+.|++++|.++|+++ ...|+ ..+|.++..++.+.|+.++|...|+++++...+-...|..+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 88999999999999999997 34555 78999999999999999999999999998765544555443
No 122
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.43 E-value=0.00011 Score=86.53 Aligned_cols=325 Identities=11% Similarity=0.047 Sum_probs=197.7
Q ss_pred HHHhCCChhHHHHHHhcCCC----CCeehHHHHHHHHHhCCChhHHHHHHHhCccccCC----CCCCHh--hHHHHHHHH
Q 043060 174 MYAQNGELESARLVFNKSSL----RDAVSYTALITGYASRGYLDDARQLFDEMPIREEN----FVPNES--TVVTVLSAC 243 (707)
Q Consensus 174 ~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~----~~p~~~--t~~~ll~~~ 243 (707)
.....|+++.+...++.++. .+..........+...|++++|..++......-.. ..|... ....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456777777777777642 23333344455556778888888887765311011 111212 222333445
Q ss_pred hccCCchHHHHHHHHHHHcCCCch----hHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CC--hhhHHHHHHHHH
Q 043060 244 AHMGSLELGNWVCSLIEGHGLGSN----LHVTNALIDMYSKCGDLVKARDLFESIEK-------RD--VISWNVMIGGYT 310 (707)
Q Consensus 244 ~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~ 310 (707)
...|+++.+...+......--..+ ....+.+...+...|++++|...+++... .. ..++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 678888888888888766311112 23456667778888999888888877652 11 224455666778
Q ss_pred hcCCHHHHHHHHHHHhhc----CCC--C-ChhhHHhHHHHHhccCCchHHHHHHHHHHHhCC---CCCcHHHHhHHhhHH
Q 043060 311 HTSDYKEALMLFRQMLQS----NIE--P-NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ---KLNNVSLWTSLIDMY 380 (707)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~----g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~li~~y 380 (707)
..|++++|...+++.... +.. + ....+..+...+...|+++.|...+........ .......+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 889999998888776542 211 1 122333444456667888888888877655311 111344555577788
Q ss_pred HhcCCHHHHHHHHhcCC----CC-ChHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh---HHHHHHHHHh
Q 043060 381 AKCGNIKAAEQVFDGMG----YK-TLASWN-----AMISGLAMHGKADKALSLFSRMIGEGLQPDDI---TFVGVLSACN 447 (707)
Q Consensus 381 ~~~g~~~~A~~~~~~~~----~~-~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~ 447 (707)
...|+.++|.+.++... .. ....+. ..+..+...|+.+.|..++.+........... ....+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999888877652 11 111111 12244456788888888877755421111111 1345666778
Q ss_pred ccCCHHHHHHHHHHhHHh---cCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043060 448 HAGLLDIGRQYFNAMIQD---YKISPK-LQHYGCMVDLLGRAGLFDEAEALLKTM 498 (707)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 498 (707)
..|+.++|...++..... .+..++ ..+...+..+|.+.|+.++|.+.+.+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 889999998888876543 233332 245667778889999999999988875
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.42 E-value=2.4e-05 Score=72.27 Aligned_cols=153 Identities=16% Similarity=0.189 Sum_probs=97.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 043060 405 NAMISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLG 483 (707)
Q Consensus 405 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 483 (707)
..+-..+...|+.+....+..+... ..| |.......+....+.|++.+|...|.+... .-++|...|+.+.-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHH
Confidence 3344555556666666665555443 222 222334455666666777777777766654 55566677777777777
Q ss_pred HcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHH
Q 043060 484 RAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIR 561 (707)
Q Consensus 484 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 561 (707)
+.|++++|..-|.+. .+.|+ +...+.|...+.-.|+.+.|..++.......+.++.+-..|+-+....|++++|..+.
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 777777777666664 44444 6666777777777777777777777777666666667777777777777777776543
No 124
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=1.2e-05 Score=84.20 Aligned_cols=188 Identities=13% Similarity=0.034 Sum_probs=114.7
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC
Q 043060 373 WTSLIDMYAKCGNIKAAEQVFDGMG--YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450 (707)
Q Consensus 373 ~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 450 (707)
+...+.+|...|+..+|..+..+-. ++|...|-.+.+......-+++|.++++..... .-..+.....+.+
T Consensus 427 w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~ 499 (777)
T KOG1128|consen 427 WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNK 499 (777)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccch
Confidence 3344455555555555554443322 234444444444444444445555554433221 0000111112245
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHH
Q 043060 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAK 528 (707)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~ 528 (707)
+++++...|+.-.+- .+.-..+|-.+.-+..+.++++.|.+.|... ...|| ...||++-.+|.+.|+-.+|...+.
T Consensus 500 ~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 500 DFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred hHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 566666666544431 1224456666666777888888888888775 66777 7788888888888888888888888
Q ss_pred HHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 529 HLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 529 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
++++-+-++...|.+..-...+.|.|++|.+.+.++.+...
T Consensus 578 EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 578 EALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 88887777777777777788888888888888888865443
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.36 E-value=2.7e-05 Score=71.90 Aligned_cols=136 Identities=19% Similarity=0.175 Sum_probs=113.8
Q ss_pred CCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 043060 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM--EMKPDAAIWTS 509 (707)
Q Consensus 432 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 509 (707)
..|+......+-.++...|+-+....+...... ..+.|......++....+.|++.+|...|++. .-.||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 455444335666677788888888888777543 34446667777999999999999999999997 33456999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 510 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+..+|.+.|+++.|...|.+++++.|.++..+..|+-.|.-.|+.++|..++......+.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999998876543
No 126
>PLN02789 farnesyltranstransferase
Probab=98.34 E-value=5.6e-05 Score=75.40 Aligned_cols=191 Identities=9% Similarity=0.098 Sum_probs=140.6
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHH
Q 043060 372 LWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHG-KADKALSLFSRMIGEGLQPDDI-TFVGVLSAC 446 (707)
Q Consensus 372 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~ 446 (707)
++..+-..+...++.++|+...+++.. .+..+|+.....+...| ++++++..++++.+ ..|+.. ++..-...+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~npknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--DNPKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--HCCcchHHhHHHHHHH
Confidence 344444555667778888888887643 35567887777777777 57999999999998 455554 555444445
Q ss_pred hccCC--HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC
Q 043060 447 NHAGL--LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVH---GR 519 (707)
Q Consensus 447 ~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~ 519 (707)
.+.|. .+++..+++.+.+ .-+-+...|+...-++.+.|++++|++.++++ ...| |..+|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccc
Confidence 55565 3678888888876 33457788888888999999999999999997 4445 478888887776554 22
Q ss_pred h----hHHHHHHHHHHccCCCCchhHHHHHHHhhhc----CChhhHHHHHHHHhh
Q 043060 520 L----ELGESVAKHLLELEPENPGAYVLLSNMYAGA----GRWDDVATIRTRLND 566 (707)
Q Consensus 520 ~----~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~ 566 (707)
. +.+.....++++.+|+|..+|..+..++... ++..+|.+...+..+
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 2 4677788899999999999999999999873 445667777766554
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.32 E-value=7.4e-06 Score=71.40 Aligned_cols=98 Identities=17% Similarity=0.286 Sum_probs=79.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 548 (707)
+......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3345556777778888888888888775 4445 4778888888888888999999999988888888888888999999
Q ss_pred hhcCChhhHHHHHHHHhhCC
Q 043060 549 AGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~~ 568 (707)
...|++++|.+.+++..+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 96 LALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 99999999999888877654
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.29 E-value=8e-05 Score=82.01 Aligned_cols=139 Identities=11% Similarity=0.074 Sum_probs=111.5
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLS 444 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~ 444 (707)
+...+..|.......|.+++|+.+++... ..+...+..++..+.+.+++++|+..+++... ..|+.. ....+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHH
Confidence 57788888999999999999999999874 33566888889999999999999999999998 678776 4556666
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 043060 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM--EMKPDAAIWTSLL 511 (707)
Q Consensus 445 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll 511 (707)
++.+.|++++|..+|+++.. ..+-+...+..+..++...|+.++|...|++. ...|-...|+.++
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 78889999999999999986 33345778888999999999999999999986 2234455555444
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.26 E-value=0.00012 Score=73.55 Aligned_cols=114 Identities=22% Similarity=0.245 Sum_probs=57.1
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHH
Q 043060 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGES 525 (707)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~ 525 (707)
..|.+++|+..++.+++ ..+.|...+....+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++.+|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 34445555555555443 22233444444445555555555555555553 33444 4444555555555555555555
Q ss_pred HHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHH
Q 043060 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563 (707)
Q Consensus 526 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 563 (707)
.++..+..+|+++..|..|+.+|...|+..++...+.+
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 55555555555555555555555555555554444433
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.20 E-value=0.00028 Score=78.58 Aligned_cols=165 Identities=11% Similarity=0.066 Sum_probs=77.5
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 043060 235 TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314 (707)
Q Consensus 235 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 314 (707)
.+..|+..+...++++++.++.....+.. +.....|-.+...|...++.+++..+ .++.......+
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~~ 98 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNLK 98 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccccc
Confidence 44555555555566666655555444331 11222222233344444443333322 22222223333
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHh
Q 043060 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394 (707)
Q Consensus 315 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 394 (707)
+.-..-+...|... .-+...+..+..+|.+.|+.+++..+++.+++..+. ++.+.|.+...|+.. ++++|.+++.
T Consensus 99 ~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~--n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 99 WAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD--NPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred hhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 32222222233321 112234445555555666666666666666665543 555666666666655 6666655554
Q ss_pred cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043060 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG 429 (707)
Q Consensus 395 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (707)
+. +..|...+++.++.++|.++..
T Consensus 174 KA-----------V~~~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 174 KA-----------IYRFIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred HH-----------HHHHHhhhcchHHHHHHHHHHh
Confidence 32 2224445555666666666655
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.19 E-value=4.5e-05 Score=66.39 Aligned_cols=113 Identities=13% Similarity=0.139 Sum_probs=90.3
Q ss_pred HHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 043060 423 LFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EM 500 (707)
Q Consensus 423 ~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 500 (707)
.|++... ..|+.. ....+...+...|++++|.+.|+.+... .+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556665 566553 4566777788889999999999888762 3446778888899999999999999998886 45
Q ss_pred CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 043060 501 KPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG 539 (707)
Q Consensus 501 ~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 539 (707)
.|+ ...|..+...+...|+++.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 554 778888888999999999999999999999998764
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.0013 Score=60.89 Aligned_cols=157 Identities=18% Similarity=0.153 Sum_probs=83.6
Q ss_pred hHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----c
Q 043060 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH----A 449 (707)
Q Consensus 374 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~ 449 (707)
..-...|.+.|++++|.+.......-+....+ +..+.+..+.+-|.+.+++|.+ + -+..|.+.|..++.+ .
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~--i-ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ--I-DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc--c-chHHHHHHHHHHHHHHhccc
Confidence 33345677778888888777763322332222 3345566677777777887776 2 244466555555432 3
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCh-hHHHHH
Q 043060 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMK-PDAAIWTSLLGACRVHGRL-ELGESV 526 (707)
Q Consensus 450 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~-~~A~~~ 526 (707)
+.+.+|.-+|++|.+ ..+|+..+.+.+..+....|++++|..++++. ... .++.+...++-.-...|.. +.-.+.
T Consensus 187 ek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 446666666666654 34455555555555555566666666665554 111 2344444444333333332 333344
Q ss_pred HHHHHccCCCC
Q 043060 527 AKHLLELEPEN 537 (707)
Q Consensus 527 ~~~~~~~~p~~ 537 (707)
..++....|..
T Consensus 265 l~QLk~~~p~h 275 (299)
T KOG3081|consen 265 LSQLKLSHPEH 275 (299)
T ss_pred HHHHHhcCCcc
Confidence 44555555543
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=0.00033 Score=70.53 Aligned_cols=147 Identities=20% Similarity=0.188 Sum_probs=116.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHH-HHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 043060 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV-LSACNHAGLLDIGRQYFNAMIQDYKISPK-LQHYGC 477 (707)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 477 (707)
....+......+...|++++|+..++.++. -.||...|..+ ...+.+.++.++|.+.++.+.. ..|+ ....-.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~ 379 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLN 379 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHH
Confidence 334444455556678999999999999988 57777766554 5578899999999999999875 3454 556667
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChh
Q 043060 478 MVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 555 (707)
+.++|.+.|++.+|+.+++.. .-.| |+..|..|..+|...|+..++... .+..|...|+|+
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~ 442 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLE 442 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHH
Confidence 889999999999999999986 3334 589999999999999997766554 456788899999
Q ss_pred hHHHHHHHHhhCC
Q 043060 556 DVATIRTRLNDKG 568 (707)
Q Consensus 556 ~a~~~~~~m~~~~ 568 (707)
+|+.......++.
T Consensus 443 ~A~~~l~~A~~~~ 455 (484)
T COG4783 443 QAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHhc
Confidence 9999998888764
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.14 E-value=9.6e-05 Score=75.20 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=101.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 043060 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRV 516 (707)
Q Consensus 439 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 516 (707)
..+|+..+...++++.|.++|+++.+. .|+ ....++..+...++-.+|.+++++. ...| |...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 455666777788899999999998764 244 4445788888888889999988885 3344 47777777888999
Q ss_pred cCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 517 HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
.++++.|..+++++.+..|.+..+|..|+.+|.+.|++++|.-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999888775
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.14 E-value=0.014 Score=59.70 Aligned_cols=440 Identities=13% Similarity=0.134 Sum_probs=240.0
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 043060 93 PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLI 172 (707)
Q Consensus 93 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 172 (707)
-|+.+|+.||+-+... ..+++.+.|+++... ++-....|..-+..-.+..+++..+.+|.+.+..-+ +...|...+
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl 93 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL 93 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence 3888999999987666 899999999999853 334556788888888889999999999998887644 344555555
Q ss_pred HHHHh-CCChhHH----HHHHh------cCCCCCeehHHHHHHH---------HHhCCChhHHHHHHHhCccccCCCCCC
Q 043060 173 NMYAQ-NGELESA----RLVFN------KSSLRDAVSYTALITG---------YASRGYLDDARQLFDEMPIREENFVPN 232 (707)
Q Consensus 173 ~~~~~-~g~~~~A----~~~f~------~~~~~~~~~~~~li~~---------~~~~g~~~~A~~l~~~m~~~~~~~~p~ 232 (707)
+---+ .|+...+ .+.|+ .|.-.+-..|+..|.- |..+.+.+...++|.+++. . |
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~--t---P- 167 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV--T---P- 167 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc--C---c-
Confidence 43222 2333332 22222 1222344456655543 2333445555666666632 1 1
Q ss_pred HhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC------CC--------
Q 043060 233 ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK------RD-------- 298 (707)
Q Consensus 233 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~-------- 298 (707)
.+++++-..=+....+ ..|..+..-++. -+...+..|+++++++.. ++
T Consensus 168 -------------m~nlEkLW~DY~~fE~---~IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~ 229 (656)
T KOG1914|consen 168 -------------MHNLEKLWKDYEAFEQ---EINIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKG 229 (656)
T ss_pred -------------cccHHHHHHHHHHHHH---HHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Confidence 0111111111111000 011111111110 111223344444443320 00
Q ss_pred -------hhhHHHHHHHHHhcCCH--------HHHHHHHHH-HhhcCCCCChhhHH-hHH----HHHhccCCc-------
Q 043060 299 -------VISWNVMIGGYTHTSDY--------KEALMLFRQ-MLQSNIEPNDVTFL-SVL----PACAYLGAL------- 350 (707)
Q Consensus 299 -------~~~~~~li~~~~~~g~~--------~~A~~~~~~-m~~~g~~p~~~t~~-~ll----~~~~~~~~~------- 350 (707)
+..|-.+|.-=..++.- ....=.+++ |.-.+..|+..-.. ..+ +.+...|+.
T Consensus 230 T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t 309 (656)
T KOG1914|consen 230 TKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLT 309 (656)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhH
Confidence 11233333222111110 001111111 11123333322111 111 112223332
Q ss_pred hHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcC---CHHHHHHHHhcCCC----CChHHHHHHHHHHHHcCCHHHHHHH
Q 043060 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG---NIKAAEQVFDGMGY----KTLASWNAMISGLAMHGKADKALSL 423 (707)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~ 423 (707)
+++..+++..+..-... +..+|..+.+---..- ..+.....+++... .-..+|-..++.-.+..-.+.|..+
T Consensus 310 ~e~~~~yEr~I~~l~~~-~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKE-NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 44555555555443333 4445554443221111 13333444443321 2234677778887888889999999
Q ss_pred HHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC---C
Q 043060 424 FSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM---E 499 (707)
Q Consensus 424 ~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~ 499 (707)
|.+..+.+..+ +.....+++.-+ -+++.+-|.++|+.=.+.+|- +...-...++-+.+.++-..|..+|++. .
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999998888 444666666544 467899999999987775543 4444567788899999999999999997 2
Q ss_pred CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc----hhHHHHHHHhhhcCChhhHHHHHHHH
Q 043060 500 MKPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPENP----GAYVLLSNMYAGAGRWDDVATIRTRL 564 (707)
Q Consensus 500 ~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m 564 (707)
+.|| ..+|..++.--..-|++..+.++-++....-|.+. ..-..+.+.|.-.+....-..-++.|
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 3455 67999999999999999999999888877655211 23344556666666655444444433
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.0014 Score=60.21 Aligned_cols=168 Identities=15% Similarity=0.186 Sum_probs=115.2
Q ss_pred hHHhhHHHhcCCHHHHHHHHhcCCCCChHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC
Q 043060 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASW---NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450 (707)
Q Consensus 374 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 450 (707)
..+.-+...+|+.+.|..+++.+..+=+.++ ..-..-+-..|++++|+++|+.+++.. +.|.+++..=+...-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 3334444455666666666555422111111 111122455788999999999998864 445567776666667778
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC---ChhHHHH
Q 043060 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHG---RLELGES 525 (707)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g---~~~~A~~ 525 (707)
+--+|++-+....+ .+..|.+.|.-+.+.|...|++++|.--++++ -+.|- +..+..+...+...| +.+.|.+
T Consensus 135 K~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77788888887776 56679999999999999999999999999987 44564 556666666655444 6788999
Q ss_pred HHHHHHccCCCCchhHHHH
Q 043060 526 VAKHLLELEPENPGAYVLL 544 (707)
Q Consensus 526 ~~~~~~~~~p~~~~~~~~l 544 (707)
.|.+++++.|.+...+..+
T Consensus 213 yy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHhChHhHHHHHHH
Confidence 9999999999665555444
No 137
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=5.9e-06 Score=52.29 Aligned_cols=35 Identities=23% Similarity=0.457 Sum_probs=31.5
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCc
Q 043060 96 VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNT 130 (707)
Q Consensus 96 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 130 (707)
++||++|.+|++.|++++|.++|.+|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999998874
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.06 E-value=0.0026 Score=71.12 Aligned_cols=233 Identities=13% Similarity=0.094 Sum_probs=124.3
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHH
Q 043060 267 NLHVTNALIDMYSKCGDLVKARDLFESIEK--R-DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343 (707)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 343 (707)
+...+..|++.|...+++++|.++.+...+ | ....|-.+...+.+.++.+++..+ .+.. .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~---------------~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID---------------S 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh---------------h
Confidence 456667777777777777777777765443 2 223344444455566655555444 2222 2
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHH
Q 043060 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKA 420 (707)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 420 (707)
.....++.....+...+...+. +..++..|..+|-+.|+.++|..+++++. ..|+...|.+...|+.. +.++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~---~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGE---NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHhhhh---hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 2222223223333333333222 44466677777777777777777777663 33566777777777777 77777
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 043060 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEM 500 (707)
Q Consensus 421 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 500 (707)
++++.+.+.. +...+++..+.+++.++.. ..+-+...+--+..... ...+.
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~------------~~~~~ 219 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVL------------GHREF 219 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHH------------hhhcc
Confidence 7777776652 3444556666666666654 22222222211111111 11111
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhh
Q 043060 501 KPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549 (707)
Q Consensus 501 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 549 (707)
.--..++--+-.-|...++++.+..+++.+++.+|.|..+...++..|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 1123344444455555666666666666666666666666555555554
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.03 E-value=9.5e-06 Score=51.31 Aligned_cols=34 Identities=38% Similarity=0.831 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 436 (707)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999973
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.01 E-value=0.0002 Score=72.97 Aligned_cols=128 Identities=12% Similarity=0.129 Sum_probs=97.3
Q ss_pred HHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhc
Q 043060 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSACNH 448 (707)
Q Consensus 370 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 448 (707)
-....+|+..+...++++.|..+|+++...++..+..++..+...++-.+|++++++.+.. .| +...+..-...|..
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLS 246 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 3445566777777888899999999888777777777888888888888899988888863 44 33344445556778
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 043060 449 AGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502 (707)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 502 (707)
.++++.|..+.+++.+ ..| +..+|..|+.+|.+.|++++|+..++.+|..|
T Consensus 247 k~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred cCCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 8888888888888875 344 55688888888888888888888888886554
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.00 E-value=0.00021 Score=62.92 Aligned_cols=114 Identities=20% Similarity=0.212 Sum_probs=58.6
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhH
Q 043060 449 AGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD----AAIWTSLLGACRVHGRLEL 522 (707)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~ 522 (707)
.++...+...++.+.++++-.+ .....-.+...+...|++++|...|+.. ...|| ......|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555554322221 1122223445555666666666666654 11122 2234445555666666666
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHH
Q 043060 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563 (707)
Q Consensus 523 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 563 (707)
|+..++.. .-.+..+..+..++++|.+.|++++|+..|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 22233445566666667777777777666654
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.97 E-value=0.047 Score=59.53 Aligned_cols=215 Identities=14% Similarity=0.120 Sum_probs=126.8
Q ss_pred HHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHH--hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh
Q 043060 104 GHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSC--AKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGEL 181 (707)
Q Consensus 104 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 181 (707)
.....+++..|+....+..+. .||. .|..+++++ .+.|..++|..+++.....+. .|..+...+-..|-..|+.
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhh
Confidence 345567788888888887765 3443 355566654 477888888877776665543 3777888888888888888
Q ss_pred hHHHHHHhcCCCCCee--hHHHHHHHHHhCCChh----HHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCC-------
Q 043060 182 ESARLVFNKSSLRDAV--SYTALITGYASRGYLD----DARQLFDEMPIREENFVPNESTVVTVLSACAHMGS------- 248 (707)
Q Consensus 182 ~~A~~~f~~~~~~~~~--~~~~li~~~~~~g~~~----~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~------- 248 (707)
++|..++++....++. ....+..+|++.+.+. .|++++... +-+.+.|-++++...+.-.
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~-------pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF-------PKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CcccchHHHHHHHHHHhccCCccccc
Confidence 8888888877655333 3334455666666554 456666544 2256666666666543311
Q ss_pred ---chHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcCCHHHHHHHHHhc-----CCCChhhHHHHHHHHHhcCCHHHHH
Q 043060 249 ---LELGNWVCSLIEGHG-LGSNLHVTNALIDMYSKCGDLVKARDLFESI-----EKRDVISWNVMIGGYTHTSDYKEAL 319 (707)
Q Consensus 249 ---~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~ 319 (707)
+..|....+.+++.+ --.+..-...........|++++|++++..- ...+...-+.-+..+...+++.+..
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence 123444455554443 1111112222233445566777777776321 1223334444556666777777777
Q ss_pred HHHHHHhhcC
Q 043060 320 MLFRQMLQSN 329 (707)
Q Consensus 320 ~~~~~m~~~g 329 (707)
++-.++...|
T Consensus 247 ~l~~~Ll~k~ 256 (932)
T KOG2053|consen 247 ELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHhC
Confidence 7777776665
No 143
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.93 E-value=2.5e-05 Score=58.66 Aligned_cols=65 Identities=22% Similarity=0.281 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcC-ChhhHHHHHHHHhhC
Q 043060 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG-RWDDVATIRTRLNDK 567 (707)
Q Consensus 503 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 567 (707)
++.+|..+...+...|++++|+..|+++++++|+++.+|..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999999999999999999999 799999999987763
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.93 E-value=1.4e-05 Score=50.10 Aligned_cols=34 Identities=21% Similarity=0.416 Sum_probs=28.5
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCC
Q 043060 95 QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVP 128 (707)
Q Consensus 95 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 128 (707)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888888888888888888888888888876
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.93 E-value=9.3e-05 Score=59.37 Aligned_cols=93 Identities=25% Similarity=0.330 Sum_probs=76.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcC
Q 043060 475 YGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552 (707)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 552 (707)
+..+...+...|++++|...+++. ...|+ ...+..+...+...|+++.|.+.++++.+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445667778888889998888875 44454 5677788888888899999999999999988888888889999999999
Q ss_pred ChhhHHHHHHHHhhC
Q 043060 553 RWDDVATIRTRLNDK 567 (707)
Q Consensus 553 ~~~~a~~~~~~m~~~ 567 (707)
++++|...+++..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988887654
No 146
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.0031 Score=58.57 Aligned_cols=146 Identities=13% Similarity=0.094 Sum_probs=95.9
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCC-hHHHHHHHHHHHH----cCCH
Q 043060 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT-LASWNAMISGLAM----HGKA 417 (707)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~----~g~~ 417 (707)
.|.+.++++.|....... . +..+.-.=+..+.+..+++-|.+.+++|.+-| -.+.+.|..++.+ .+..
T Consensus 117 i~~~~~~~deAl~~~~~~----~---~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLG----E---NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred HhhcCCChHHHHHHHhcc----c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhh
Confidence 455555555555544331 0 33333444555667778888888888887653 3466666666543 3458
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHH-HHHHH
Q 043060 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA-EALLK 496 (707)
Q Consensus 418 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A-~~~~~ 496 (707)
.+|.-+|++|-+. ..|+..+.+....++...|++++|..++++...+ -..++.+...++-+-...|...++ .+.+.
T Consensus 190 qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 190 QDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 8899999998765 7888889999999999999999999999988764 334555665565555556655444 33444
Q ss_pred hC
Q 043060 497 TM 498 (707)
Q Consensus 497 ~~ 498 (707)
+.
T Consensus 267 QL 268 (299)
T KOG3081|consen 267 QL 268 (299)
T ss_pred HH
Confidence 44
No 147
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.0012 Score=60.67 Aligned_cols=162 Identities=15% Similarity=0.156 Sum_probs=128.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 043060 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482 (707)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 482 (707)
|..++-+....|+.+.|...++++... + |.+. .-..-..-+...|++++|.++++.+.++ -+.|..+|.--+-+.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHH
Confidence 444555666788999999999999875 3 5544 2222222355689999999999999874 455778888888888
Q ss_pred HHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcC---ChhhH
Q 043060 483 GRAGLFDEAEALLKTM--EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG---RWDDV 557 (707)
Q Consensus 483 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a 557 (707)
-..|+.-+|++-+.+. .+-.|...|.-|...|...|+++.|.-.+++++-..|.++..+..+++.+.-.| +.+-+
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8889988998877765 455689999999999999999999999999999999999999999999976655 45567
Q ss_pred HHHHHHHhhCCC
Q 043060 558 ATIRTRLNDKGM 569 (707)
Q Consensus 558 ~~~~~~m~~~~~ 569 (707)
.+++.+..+...
T Consensus 211 rkyy~~alkl~~ 222 (289)
T KOG3060|consen 211 RKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHhCh
Confidence 788888777544
No 148
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.91 E-value=1.7e-05 Score=62.30 Aligned_cols=78 Identities=21% Similarity=0.396 Sum_probs=55.0
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHH
Q 043060 485 AGLFDEAEALLKTM-EMKP---DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATI 560 (707)
Q Consensus 485 ~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 560 (707)
.|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777765 2222 455566677788888888888888877 666776767777778888888888888888
Q ss_pred HHH
Q 043060 561 RTR 563 (707)
Q Consensus 561 ~~~ 563 (707)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 149
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.89 E-value=0.00017 Score=73.80 Aligned_cols=86 Identities=15% Similarity=0.143 Sum_probs=46.8
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHH
Q 043060 482 LGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559 (707)
Q Consensus 482 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 559 (707)
+...|++++|++.|+++ ...|+ ...|..+..++...|++++|+..++++++++|.++.+|..++.+|...|++++|+.
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 44455555555555553 33333 44555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHhhC
Q 043060 560 IRTRLNDK 567 (707)
Q Consensus 560 ~~~~m~~~ 567 (707)
.+++..+.
T Consensus 92 ~~~~al~l 99 (356)
T PLN03088 92 ALEKGASL 99 (356)
T ss_pred HHHHHHHh
Confidence 55555543
No 150
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.88 E-value=0.0079 Score=58.88 Aligned_cols=242 Identities=19% Similarity=0.188 Sum_probs=160.5
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCChh--hHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHH
Q 043060 311 HTSDYKEALMLFRQMLQSNIEPNDV--TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388 (707)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 388 (707)
-.|+++.|.+-|+.|... |... -+..+.-.--+.|+.+.+++.-+..-..-+. -.....+.+...+..|+++.
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~--l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ--LPWAARATLEARCAAGDWDG 206 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC--CchHHHHHHHHHHhcCChHH
Confidence 356666666666666542 2111 1222333334566777777776666655554 45567788888899999999
Q ss_pred HHHHHhcCC-----CCChH--HHHHHHHHHH---HcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHH
Q 043060 389 AEQVFDGMG-----YKTLA--SWNAMISGLA---MHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQ 457 (707)
Q Consensus 389 A~~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~ 457 (707)
|+++.+.-. ++++. .--.|+.+-+ -..+...|...-.+..+ +.||-+ .-.....++.+.|++.++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 999987643 34433 2223333221 13456667776666666 788876 44455678899999999999
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 043060 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM----EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 458 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
+++.+-+ ..|.+..+... .+.|.|+. ++.-+++. .++|| ..+...+..+-...|++..|..-.+.+..
T Consensus 285 ilE~aWK---~ePHP~ia~lY--~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 285 ILETAWK---AEPHPDIALLY--VRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred HHHHHHh---cCCChHHHHHH--HHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 9999875 45665554322 23455553 33333332 45666 77778888899999999999999999999
Q ss_pred cCCCCchhHHHHHHHhhhc-CChhhHHHHHHHHhhC
Q 043060 533 LEPENPGAYVLLSNMYAGA-GRWDDVATIRTRLNDK 567 (707)
Q Consensus 533 ~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 567 (707)
..|. ...|..|+++-... |+-.++...+-+..+.
T Consensus 358 ~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 358 EAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 9995 47899999997655 9999998887776654
No 151
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.87 E-value=2.5e-05 Score=48.91 Aligned_cols=33 Identities=36% Similarity=0.671 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 043060 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434 (707)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 434 (707)
.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888877
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.87 E-value=0.00092 Score=58.80 Aligned_cols=124 Identities=17% Similarity=0.207 Sum_probs=84.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh--HHHHH
Q 043060 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDD----ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL--QHYGC 477 (707)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~ 477 (707)
|..++..+ ..++...+...++++... .|+. .....+...+...|++++|...|+.+... ...|.. ...-.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 44445544 377778888888888774 3333 23334556677888888888888888764 222221 23445
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043060 478 MVDLLGRAGLFDEAEALLKTMEMK-PDAAIWTSLLGACRVHGRLELGESVAKHLL 531 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 531 (707)
|...+...|++++|+..++..... .....+...+..+...|+.++|+..|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 677788888999998888776322 235667778888888999999988888753
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.84 E-value=0.0002 Score=60.58 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC---chhHHHHHHH
Q 043060 476 GCMVDLLGRAGLFDEAEALLKTM-EMKPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN---PGAYVLLSNM 547 (707)
Q Consensus 476 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~ 547 (707)
-.++..+.+.|++++|.+.|+.+ ...|+ ...+..+...+...|+++.|...++.++...|++ +.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 33444455555555555555554 12222 2344445555666666666666666666555543 3445556666
Q ss_pred hhhcCChhhHHHHHHHHhhCC
Q 043060 548 YAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~~~ 568 (707)
+.+.|++++|.+.++++.+..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHC
Confidence 666666666666666655543
No 154
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.82 E-value=5e-05 Score=56.16 Aligned_cols=60 Identities=23% Similarity=0.355 Sum_probs=48.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 510 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+...+...|++++|+..++++++.+|+++.++..++.++...|++++|..+++++.+...
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456677888888888888888888888888888888888888888888888888876543
No 155
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.82 E-value=0.0002 Score=67.70 Aligned_cols=106 Identities=15% Similarity=0.108 Sum_probs=75.0
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 043060 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELG 523 (707)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A 523 (707)
..+.+++++|+..|..+++ -.+-|...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3455666677766666664 22235555666667777888888777766664 66776 77888999999999999999
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHhhhcCC
Q 043060 524 ESVAKHLLELEPENPGAYVLLSNMYAGAGR 553 (707)
Q Consensus 524 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 553 (707)
++.|+++++++|+|......|-.+-.+.+.
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 999999999999887655555544444333
No 156
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00064 Score=66.77 Aligned_cols=155 Identities=14% Similarity=0.096 Sum_probs=112.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH--HHHhccCCHHHHHHHHHHhHHhcCCCCChHH------------
Q 043060 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL--SACNHAGLLDIGRQYFNAMIQDYKISPKLQH------------ 474 (707)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll--~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~------------ 474 (707)
.++.-.|++++|.+.--..++ +.+... +..++ .++.-.++.+.|...|++.++ ..|+...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilk--ld~~n~-~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILK--LDATNA-EALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHh--cccchh-HHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHH
Confidence 345667888888777666665 333322 11222 233456677778877776542 3343322
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 043060 475 -YGCMVDLLGRAGLFDEAEALLKTM-EMK-----PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547 (707)
Q Consensus 475 -~~~li~~~~~~g~~~~A~~~~~~~-~~~-----p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 547 (707)
+.--.+-..+.|++.+|.+.+.+. .+. |+...|.....+..+.|+.++|+.-.+++++++|.-..+|..-+++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 122234567899999999999885 444 4566777777888899999999999999999999988999999999
Q ss_pred hhhcCChhhHHHHHHHHhhCCC
Q 043060 548 YAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+...++|++|.+-+++..+...
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999877554
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.79 E-value=0.00044 Score=58.46 Aligned_cols=104 Identities=14% Similarity=0.130 Sum_probs=68.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 043060 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD----AAIWTSLLG 512 (707)
Q Consensus 439 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~ 512 (707)
+..+...+...|++++|...|..+.+.+.-.+ ....+..+..++.+.|++++|.+.++.+ ...|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34445555566666666666666654321111 1234555677777777887777777765 22333 456777788
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCchhHH
Q 043060 513 ACRVHGRLELGESVAKHLLELEPENPGAYV 542 (707)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 542 (707)
.+...|+.+.|...++++++..|+++.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 888889999999999999988888765443
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.72 E-value=0.00055 Score=70.12 Aligned_cols=104 Identities=14% Similarity=0.112 Sum_probs=70.0
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 043060 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLEL 522 (707)
Q Consensus 445 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 522 (707)
.+...|++++|.+.|+.+++ ..+.+...|..+..+|.+.|++++|+..++++ .+.|+ ...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 34455666666666666654 22234556666666777777777777777765 45554 6677777778888888888
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHhhh
Q 043060 523 GESVAKHLLELEPENPGAYVLLSNMYAG 550 (707)
Q Consensus 523 A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 550 (707)
|+..++++++++|+++.....+..+..+
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 8888888888888877776666555433
No 159
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.71 E-value=0.0017 Score=69.52 Aligned_cols=142 Identities=15% Similarity=0.062 Sum_probs=82.6
Q ss_pred CCCChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 043060 397 GYKTLASWNAMISGLAMH-----GKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470 (707)
Q Consensus 397 ~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 470 (707)
...|...|...+.+.... ++...|+.+|++.++ ..|+.. .+..+..++... ++..|
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~----------------~~~~~ 394 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVR----------------HSQQP 394 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHH----------------HhcCC
Confidence 345777888888775432 236789999999998 778764 333332222111 01111
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC---C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHH
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTM---E-MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSN 546 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~---~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 546 (707)
.. .+++.++.+..++. + ...++.+|.++.-.....|++++|...++++++++| +..+|..++.
T Consensus 395 ~~------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~ 461 (517)
T PRK10153 395 LD------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGK 461 (517)
T ss_pred cc------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 10 01122222222221 1 122345666665555666777777777777777777 4567777777
Q ss_pred HhhhcCChhhHHHHHHHHhhCCC
Q 043060 547 MYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 547 ~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+|...|+.++|.+.+++....+.
T Consensus 462 ~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 462 VYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC
Confidence 77777777777777777766554
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.69 E-value=0.0012 Score=60.17 Aligned_cols=131 Identities=13% Similarity=0.146 Sum_probs=79.1
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 043060 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD--DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477 (707)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 477 (707)
....+..+...+...|++++|+..|++..+....+. ...+..+...+.+.|++++|...+.+..+. .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 334566667777777888888888887776332222 235666666777777777777777776652 2223445555
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCC
Q 043060 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGR 553 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 553 (707)
+..+|...|+...+..-++.. ...+++|.+.++++++.+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666666666655544332221 112577888888888888865 4455555544443
No 161
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.0006 Score=64.93 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=92.5
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc---CChhHHHHHHHHHHccCCCCchhH
Q 043060 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVH---GRLELGESVAKHLLELEPENPGAY 541 (707)
Q Consensus 467 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~ 541 (707)
..+-|...|-.|...|.+.|+++.|..-|.+. .+.|| +..+..+..++... .+..++..+++++++++|.|..+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 34458899999999999999999999999986 55555 77888888777554 356789999999999999999999
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHhhCCCccCCcc
Q 043060 542 VLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGC 575 (707)
Q Consensus 542 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 575 (707)
..|+-.+...|++.+|...++.|.+.....+|..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 9999999999999999999999998776444433
No 162
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.66 E-value=0.00019 Score=53.01 Aligned_cols=61 Identities=30% Similarity=0.451 Sum_probs=52.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 043060 478 MVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 538 (707)
+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788999999999999997 56676 88999999999999999999999999999999874
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.66 E-value=0.00054 Score=62.35 Aligned_cols=96 Identities=18% Similarity=0.154 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 043060 473 QHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547 (707)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 547 (707)
..+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|+++.|...++++++..|.++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34566666777778888887777765 22222 45788888888899999999999999999999888888888888
Q ss_pred hhhcCC--------------hhhHHHHHHHHhhCC
Q 043060 548 YAGAGR--------------WDDVATIRTRLNDKG 568 (707)
Q Consensus 548 ~~~~g~--------------~~~a~~~~~~m~~~~ 568 (707)
|...|+ +++|.+++++..+.+
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 888776 455666665555433
No 164
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.65 E-value=5.8e-05 Score=46.05 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=25.9
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHHHHCCC
Q 043060 96 VIWNNIIRGHSLSSSPVVAIKFYVRMILSGF 126 (707)
Q Consensus 96 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 126 (707)
++||.||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887763
No 165
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.14 Score=54.90 Aligned_cols=359 Identities=15% Similarity=0.120 Sum_probs=200.7
Q ss_pred HHHcCCCchHHHHHHHHH--------HHCCCCCCcccHHH-----HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 043060 104 GHSLSSSPVVAIKFYVRM--------ILSGFVPNTYTFPF-----ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTS 170 (707)
Q Consensus 104 ~~~~~g~~~~A~~~~~~m--------~~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 170 (707)
++.+.-++++-..+.+.. .+.|++.+..-|.. ++.-+...+.+..|.++-..+-..-... ..++..
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~ 476 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLE 476 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHH
Confidence 344444555544444333 34566666655544 4566677788899999887764322122 567777
Q ss_pred HHHHHHhCC---ChhHHHHHHhcCCC--CCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCC---CHhhHHHHHHH
Q 043060 171 LINMYAQNG---ELESARLVFNKSSL--RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVP---NESTVVTVLSA 242 (707)
Q Consensus 171 li~~~~~~g---~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p---~~~t~~~ll~~ 242 (707)
...-+.+.. +-+.+..+=+++.. ...++|..+.+-..+.|+++-|..+++.=.. .....| +..-+...+.-
T Consensus 477 Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~-~~~qV~lLL~m~~~~~AL~k 555 (829)
T KOG2280|consen 477 WARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPR-SGEQVPLLLKMKDSSLALKK 555 (829)
T ss_pred HHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCC-ccchhHHHhccchHHHHHHH
Confidence 777777763 33344445555555 5778999999999999999999999876432 111111 33345566677
Q ss_pred HhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC-CChhhHHHHHHHHHhcCCHHHHHHH
Q 043060 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK-RDVISWNVMIGGYTHTSDYKEALML 321 (707)
Q Consensus 243 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~ 321 (707)
+...|+.+...+++-.+.+.- +... .+.-..+...|..+|....+ .|..+ + ..+-+.++..+++..
T Consensus 556 aies~d~~Li~~Vllhlk~~~---~~s~------l~~~l~~~p~a~~lY~~~~r~~~~~~---l-~d~y~q~dn~~~~a~ 622 (829)
T KOG2280|consen 556 AIESGDTDLIIQVLLHLKNKL---NRSS------LFMTLRNQPLALSLYRQFMRHQDRAT---L-YDFYNQDDNHQALAS 622 (829)
T ss_pred HHhcCCchhHHHHHHHHHHHH---HHHH------HHHHHHhchhhhHHHHHHHHhhchhh---h-hhhhhcccchhhhhh
Confidence 777788777777766655431 1111 11112233445555544332 12111 1 111222222222222
Q ss_pred HHHH------hhcCCCCChhhHHhHHHHHhccCCchHHHHH----------HHHHHH-hCCCCCcHHHHhHHhhHHHhcC
Q 043060 322 FRQM------LQSNIEPNDVTFLSVLPACAYLGALDLGKWI----------HAYIDK-NHQKLNNVSLWTSLIDMYAKCG 384 (707)
Q Consensus 322 ~~~m------~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~----------~~~~~~-~~~~~~~~~~~~~li~~y~~~g 384 (707)
|..= ...|..|+. .....++++........+. .+.+.. .+....+. +.+--+.-+...|
T Consensus 623 ~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dl-Sl~dTv~~li~~g 698 (829)
T KOG2280|consen 623 FHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDL-SLHDTVTTLILIG 698 (829)
T ss_pred hhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccC-cHHHHHHHHHHcc
Confidence 2110 011223332 2333444444332211111 111111 12222122 2333445556678
Q ss_pred CHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 043060 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
+..+|.++-.+.+-+|-..|-.-+.+++..+++++-+++-+.+. .+.-|.-...+|.+.|+.++|..++.+..
T Consensus 699 ~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~- 771 (829)
T KOG2280|consen 699 QNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG- 771 (829)
T ss_pred chHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC-
Confidence 88888888888888888888888888888888877666554432 24566777888888888888888887652
Q ss_pred hcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q 043060 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT 497 (707)
Q Consensus 465 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 497 (707)
|.+ -.+.+|.+.|++.+|.++--+
T Consensus 772 --~l~-------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 772 --GLQ-------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred --ChH-------HHHHHHHHhccHHHHHHHHHH
Confidence 111 467788888888888776443
No 166
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.00025 Score=67.00 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=82.1
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhh
Q 043060 479 VDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 556 (707)
.+-+.+.+++++|+..|.+. .+.|. .+.|..-..+|.+.|.++.|.+-.+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 44567889999999999986 77775 88888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCC
Q 043060 557 VATIRTRLNDKGM 569 (707)
Q Consensus 557 a~~~~~~m~~~~~ 569 (707)
|++.|++..+...
T Consensus 168 A~~aykKaLeldP 180 (304)
T KOG0553|consen 168 AIEAYKKALELDP 180 (304)
T ss_pred HHHHHHhhhccCC
Confidence 9999998876544
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.61 E-value=0.00056 Score=62.00 Aligned_cols=93 Identities=14% Similarity=-0.020 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHH
Q 043060 472 LQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSN 546 (707)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 546 (707)
...|..++..+...|++++|+..|++. ...|+ ..+|..+...+...|++++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455667777788889999999988886 33332 4588999999999999999999999999999998888888888
Q ss_pred Hhh-------hcCChhhHHHHHHHH
Q 043060 547 MYA-------GAGRWDDVATIRTRL 564 (707)
Q Consensus 547 ~~~-------~~g~~~~a~~~~~~m 564 (707)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 788888666665544
No 168
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.60 E-value=8e-05 Score=45.40 Aligned_cols=31 Identities=32% Similarity=0.714 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 043060 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330 (707)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 330 (707)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887763
No 169
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.56 E-value=0.0069 Score=53.00 Aligned_cols=133 Identities=15% Similarity=0.151 Sum_probs=102.2
Q ss_pred CCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC-CCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHH
Q 043060 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI-SPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD---AAI 506 (707)
Q Consensus 432 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~ 506 (707)
..|....-..|..+....|+..+|...|++... |+ ..|....-.+.++....+++.+|...++++ ...|+ +..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 556666666778888888888888888888765 44 446677777788888888999998888885 22232 334
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 507 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
-..+...+...|+.+.|+..|+.++...| ++..-...+..+.+.|+.+++..-+..+.+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 45677889999999999999999999888 5577778888999999999888766665543
No 170
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.54 E-value=0.0032 Score=62.12 Aligned_cols=134 Identities=18% Similarity=0.202 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 043060 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA-CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480 (707)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 480 (707)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 468888888888888999999999998532 2233344444444 33457777799999999885 4457778889999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 043060 481 LLGRAGLFDEAEALLKTM-EMKPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 538 (707)
.+.+.|+.+.|..+|++. ..-|. ...|...+..-.+.|+++....+.+++.+.-|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999996 33333 35999999999999999999999999999888743
No 171
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.52 E-value=0.12 Score=51.56 Aligned_cols=108 Identities=18% Similarity=0.176 Sum_probs=76.4
Q ss_pred hHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHH
Q 043060 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLD 453 (707)
Q Consensus 374 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 453 (707)
+..+.-+...|+...|.++..+..-++-.-|-..+.+|+..+++++-.++... +-.++-|-.++.+|.+.|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455556678888888888888778888888888888888888766654321 223467777888888888888
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043060 454 IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498 (707)
Q Consensus 454 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 498 (707)
+|..+...+. + ..-+.+|.++|++.+|.+.--+.
T Consensus 255 eA~~yI~k~~-------~----~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 255 EASKYIPKIP-------D----EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHhCC-------h----HHHHHHHHHCCCHHHHHHHHHHc
Confidence 8887776531 1 34567788888888887765543
No 172
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.51 E-value=0.0013 Score=52.45 Aligned_cols=62 Identities=26% Similarity=0.302 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 043060 474 HYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEP 535 (707)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 535 (707)
.+..+...+...|++++|.+.+++. ...|+ ..++..+...+...|+++.|...++++++..|
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 3444445555555555555555543 22222 34555566666666666666666666665554
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.50 E-value=0.00014 Score=54.29 Aligned_cols=55 Identities=24% Similarity=0.426 Sum_probs=44.6
Q ss_pred HhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
...|++++|++.++++++.+|+++.++..++.+|.+.|++++|.++++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4678888888888888888888888888888888888888888888887766443
No 174
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.45 E-value=0.16 Score=51.18 Aligned_cols=61 Identities=21% Similarity=0.228 Sum_probs=40.6
Q ss_pred HHHHHHHHHH--HHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 504 AAIWTSLLGA--CRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 504 ~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
...-|.|.+| +..+|++.++.-...=+.+..| ++.+|..++-++....++++|..++..+.
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 3344555544 3457777777666666666777 66777777777777777777777776654
No 175
>PRK15331 chaperone protein SicA; Provisional
Probab=97.44 E-value=0.0011 Score=57.40 Aligned_cols=89 Identities=10% Similarity=0.075 Sum_probs=78.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChh
Q 043060 478 MVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 555 (707)
..--+...|++++|..+|+-+ -..| +..-|..|...|-..++++.|...|..+..++++||..+...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344456899999999999986 2223 46678999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhh
Q 043060 556 DVATIRTRLND 566 (707)
Q Consensus 556 ~a~~~~~~m~~ 566 (707)
.|+..|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998876
No 176
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.41 E-value=0.00039 Score=52.74 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=50.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 511 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
...+...++++.|.++++++++++|+++..+..++.+|.+.|++++|.+.+++..+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35677888999999999999999999999999999999999999999999988886554
No 177
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.41 E-value=0.00049 Score=53.90 Aligned_cols=77 Identities=14% Similarity=0.296 Sum_probs=36.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCC---CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHH
Q 043060 414 HGKADKALSLFSRMIGEGLQP---DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFD 489 (707)
Q Consensus 414 ~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~ 489 (707)
.|+++.|+.+|+++.+. .| +...+..+..++.+.|++++|..+++.. ...| +....-.+..+|.+.|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~--~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~ 75 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLEL--DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYE 75 (84)
T ss_dssp TT-HHHHHHHHHHHHHH--HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HH
T ss_pred CccHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHH
Confidence 45566666666666652 23 2223333555555566666666555541 1111 1122223345555555555
Q ss_pred HHHHHHH
Q 043060 490 EAEALLK 496 (707)
Q Consensus 490 ~A~~~~~ 496 (707)
+|++.++
T Consensus 76 eAi~~l~ 82 (84)
T PF12895_consen 76 EAIKALE 82 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555554
No 178
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.36 E-value=0.00056 Score=51.17 Aligned_cols=65 Identities=20% Similarity=0.246 Sum_probs=56.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-ChhHHHHHHHHHHccCC
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHG-RLELGESVAKHLLELEP 535 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~p 535 (707)
+...|..+...+.+.|++++|+..|++. ...|+ ...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3567778888899999999999999885 55676 788999999999999 79999999999999987
No 179
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.36 E-value=0.36 Score=53.04 Aligned_cols=99 Identities=11% Similarity=0.119 Sum_probs=50.0
Q ss_pred cCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHH
Q 043060 75 SPFGDLSYALLVFETIRE---PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151 (707)
Q Consensus 75 ~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 151 (707)
.+.|+.++|..+++.... .|..+...+-..|...++.++|..+|++.... -|+..-...+..++.+.+++.+-.+
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666655555432 24455555556666666666666666655543 3555555555555555555544333
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHH
Q 043060 152 IHAHVLKLGLESDPFVHTSLINMYA 176 (707)
Q Consensus 152 ~~~~~~~~g~~~~~~~~~~li~~~~ 176 (707)
.--++-+ .++-+++.+-++++.+.
T Consensus 132 aa~~LyK-~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 132 AALQLYK-NFPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHHH-hCCcccchHHHHHHHHH
Confidence 3333333 12333444444444443
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.35 E-value=0.004 Score=56.37 Aligned_cols=63 Identities=10% Similarity=0.097 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 043060 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD--DITFVGVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
..|..++..+...|++++|+..|++.......|. ..++..+...+...|++++|...++...+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3556666666666777777777777665321211 12455555556666666666666655543
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.33 E-value=0.0003 Score=52.52 Aligned_cols=61 Identities=28% Similarity=0.436 Sum_probs=35.7
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHH
Q 043060 484 RAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL 544 (707)
Q Consensus 484 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 544 (707)
..|++++|+++|+++ ...| +..++..++..|.+.|++++|...++++...+|+++..+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 456666666666664 3334 355566666666666666666666666666666654444443
No 182
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.30 E-value=0.017 Score=50.04 Aligned_cols=95 Identities=7% Similarity=0.023 Sum_probs=70.2
Q ss_pred HHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHH
Q 043060 371 SLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSAC 446 (707)
Q Consensus 371 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~ 446 (707)
...-.+...+...|++++|.++|+-.. ..+..-|-.|..++...|++++|+..|..... +.||. ..+-.+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHH
Confidence 334455566667888888888888653 33566788888888888888888888888887 44544 4777777788
Q ss_pred hccCCHHHHHHHHHHhHHhcC
Q 043060 447 NHAGLLDIGRQYFNAMIQDYK 467 (707)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~ 467 (707)
...|+.+.|++.|+..+...+
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhc
Confidence 888888888888887776443
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.30 E-value=0.013 Score=58.20 Aligned_cols=91 Identities=13% Similarity=0.211 Sum_probs=48.1
Q ss_pred Hhcc-CCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhCC---CC-C----CH-HHHHHHH
Q 043060 446 CNHA-GLLDIGRQYFNAMIQDYKISPK----LQHYGCMVDLLGRAGLFDEAEALLKTME---MK-P----DA-AIWTSLL 511 (707)
Q Consensus 446 ~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~-p----~~-~~~~~ll 511 (707)
|... |++++|.+.|+....-+..... ...+..+...+.+.|++++|.++|++.. .. | +. ..+...+
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~ 203 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAI 203 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 3344 5555555555554443222221 1234456667778888888888887751 11 1 11 1222233
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCC
Q 043060 512 GACRVHGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 512 ~~~~~~g~~~~A~~~~~~~~~~~p~ 536 (707)
-.+...||...|.+.+++....+|.
T Consensus 204 l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 204 LCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3455678888888888888877764
No 184
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.28 E-value=0.35 Score=51.39 Aligned_cols=180 Identities=14% Similarity=0.093 Sum_probs=94.9
Q ss_pred CCCcccHHHHHHHHhccCChHHHHHHHHHHHHh-CC--------CCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCee
Q 043060 127 VPNTYTFPFILKSCAKISAISEGKQIHAHVLKL-GL--------ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197 (707)
Q Consensus 127 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~--------~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~ 197 (707)
.|.+..|..+.......-.++.|+..|-..... |+ -.+.....+=+.+| .|++++|++++-.+..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 466666666665555444555555544322111 11 00111112222332 4788888888887777664
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 043060 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDM 277 (707)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 277 (707)
.|..+.+.|++-...++++.=-. +..-..-...+..+...++....++.|.+.+..-.. ...++++
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ec 831 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIEC 831 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHH
Confidence 35566677777777777654210 000011123556666666666666666666554321 1234555
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043060 278 YSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324 (707)
Q Consensus 278 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 324 (707)
|.+..++++-+.+-+.+++. ......|...+.+.|.-++|.+.|-+
T Consensus 832 ly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 832 LYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHh
Confidence 55555666655555555543 33445566677777777777666543
No 185
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.23 E-value=0.00021 Score=44.38 Aligned_cols=32 Identities=34% Similarity=0.647 Sum_probs=30.4
Q ss_pred HHHHHccCCCCchhHHHHHHHhhhcCChhhHH
Q 043060 527 AKHLLELEPENPGAYVLLSNMYAGAGRWDDVA 558 (707)
Q Consensus 527 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 558 (707)
|+++++++|+|+.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999986
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.21 E-value=0.0073 Score=52.86 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=93.6
Q ss_pred hHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC--
Q 043060 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM--E-MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE-- 536 (707)
Q Consensus 462 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~-- 536 (707)
..++..+.|++..--.|.+.+.+.|+..||...|++. + +--|......+..+....++...|...++.+.+..|.
T Consensus 79 a~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r 158 (251)
T COG4700 79 ATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR 158 (251)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence 3344466788888889999999999999999999996 3 4457888899999999999999999999999998874
Q ss_pred CchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 537 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.|.....++..|...|+.++|+..|+...+.-.
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence 677889999999999999999999999887544
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.21 E-value=0.0097 Score=63.78 Aligned_cols=102 Identities=17% Similarity=0.131 Sum_probs=64.9
Q ss_pred CCCChHHHHHHHHHHHH--cC---CHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc--------CChhHHHHHHHHHHc
Q 043060 468 ISPKLQHYGCMVDLLGR--AG---LFDEAEALLKTM-EMKPD-AAIWTSLLGACRVH--------GRLELGESVAKHLLE 532 (707)
Q Consensus 468 ~~p~~~~~~~li~~~~~--~g---~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~--------g~~~~A~~~~~~~~~ 532 (707)
.+.+...|.+.+.+... .+ ..+.|..+|++. ...|+ ...|..+..++... +++..+.+.++++..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 33455555555544322 22 255666666664 55666 44444443333221 234455666666655
Q ss_pred c--CCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 533 L--EPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 533 ~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+ +|.++.+|..++-.+...|++++|...+++..+.+.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p 451 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM 451 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 4 677888999999999899999999999999998774
No 188
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.20 E-value=0.0024 Score=62.64 Aligned_cols=128 Identities=13% Similarity=0.052 Sum_probs=86.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHH---hHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCC-CCHH
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNA---MIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM-------EMK-PDAA 505 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~-p~~~ 505 (707)
.|..|.+.|.-.|+++.|+...+. +.+.+|-.. ....++.+.+++.-.|+++.|.+.++.. +-+ -...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555566667888888776653 233344433 2346777888888888888888887763 211 1244
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcc----C--CCCchhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 506 IWTSLLGACRVHGRLELGESVAKHLLEL----E--PENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 506 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
+.-+|...|....+++.|+..+.+-+.+ + .....++..|+++|...|..++|..+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5567888888888888888887766543 2 2234578888899988888888887766554
No 189
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.15 E-value=0.0052 Score=49.23 Aligned_cols=79 Identities=14% Similarity=0.140 Sum_probs=67.8
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHCCC-CCCcccHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCChhHHH
Q 043060 99 NNIIRGHSLSSSPVVAIKFYVRMILSGF-VPNTYTFPFILKSCAKIS--------AISEGKQIHAHVLKLGLESDPFVHT 169 (707)
Q Consensus 99 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 169 (707)
...|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.+++. .+...+.+++.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667777999999999999999999 899999999999987653 2446788999999999999999999
Q ss_pred HHHHHHHh
Q 043060 170 SLINMYAQ 177 (707)
Q Consensus 170 ~li~~~~~ 177 (707)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99988765
No 190
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.14 E-value=0.042 Score=54.47 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043060 404 WNAMISGLAMHGKADKALSLFSRMIG 429 (707)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (707)
+..++..+.+.|++++|+++|++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444555556666666666665554
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.14 E-value=0.0054 Score=51.13 Aligned_cols=88 Identities=18% Similarity=0.126 Sum_probs=60.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC---CchhHHHHHHHhh
Q 043060 478 MVDLLGRAGLFDEAEALLKTM---EMKPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPE---NPGAYVLLSNMYA 549 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 549 (707)
+..++-..|+.++|+.+|++. +.... ...+-.+.+.+...|++++|..++++.++..|+ +......++-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344566677777777777764 22222 445666777888888888888888888877676 5566666777778
Q ss_pred hcCChhhHHHHHHHHh
Q 043060 550 GAGRWDDVATIRTRLN 565 (707)
Q Consensus 550 ~~g~~~~a~~~~~~m~ 565 (707)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 8888888877665433
No 192
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.13 E-value=0.032 Score=53.61 Aligned_cols=174 Identities=14% Similarity=0.118 Sum_probs=99.0
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCCCC---ChH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh--HHHHHHH
Q 043060 373 WTSLIDMYAKCGNIKAAEQVFDGMGYK---TLA---SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI--TFVGVLS 444 (707)
Q Consensus 373 ~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~ 444 (707)
.-.....+.+.|++++|.+.|+.+... +.. ..-.++.+|.+.+++++|...|++..+ ..|+.. -+...+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHH
Confidence 334455556677777777777776432 111 123345666777777777777777777 334332 3333333
Q ss_pred HHhc--c---------------CC---HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH
Q 043060 445 ACNH--A---------------GL---LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504 (707)
Q Consensus 445 a~~~--~---------------g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~ 504 (707)
+.+. . .+ ..+|...|+.+++.+ |+ ..-..+|...+..+...- .
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~~~l-a 175 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLKDRL-A 175 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHHHHH-H
Confidence 3221 0 01 123334444444332 22 222333333222221000 0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC---chhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPEN---PGAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 505 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
.--..+..-|.+.|++..|..-++.+++.-|+. +.+...+..+|.+.|..++|.++...+.
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 011134556888999999999999999987764 4577788999999999999998877654
No 193
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.10 E-value=0.25 Score=49.43 Aligned_cols=111 Identities=14% Similarity=0.188 Sum_probs=86.9
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043060 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRV 516 (707)
Q Consensus 437 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~ 516 (707)
.+.+..+.-|...|+...|.++-.+ +++ |+...|...+.+|+..|+|++-.++... +-.+.-|..++.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~----Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKE----FKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHH----cCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 3556667777888988888776554 455 7888999999999999999998887654 3346888999999999
Q ss_pred cCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHH
Q 043060 517 HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564 (707)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 564 (707)
.|+..+|.....+ ..+..-..+|.++|+|.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999888776 12256678899999999998764443
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.09 E-value=0.0038 Score=60.41 Aligned_cols=93 Identities=13% Similarity=0.128 Sum_probs=53.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC---chhHHHHHH
Q 043060 475 YGCMVDLLGRAGLFDEAEALLKTM-EMKPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN---PGAYVLLSN 546 (707)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 546 (707)
|..-+..+.+.|++++|...|+.+ ...|+ ...+-.++..+...|+++.|...|+.+++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333344444456666666666554 22333 2344556666666667777777776666655543 345555566
Q ss_pred HhhhcCChhhHHHHHHHHhhC
Q 043060 547 MYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 547 ~~~~~g~~~~a~~~~~~m~~~ 567 (707)
+|...|++++|.++++++.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666667777777776666553
No 195
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.08 E-value=0.0058 Score=60.30 Aligned_cols=129 Identities=9% Similarity=0.135 Sum_probs=100.7
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 043060 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR-AGLFDEAEALLKTM--EMKPDAAIWTSLLGA 513 (707)
Q Consensus 437 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~ 513 (707)
.+|..++...-+.+.++.|+.+|..+.+. ...+...|.....+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888899999999999999999753 22344556666666445 56666699999986 333468899999999
Q ss_pred HHhcCChhHHHHHHHHHHccCCCCc---hhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 514 CRVHGRLELGESVAKHLLELEPENP---GAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
+...|+.+.|..+|++++..-|.+. ..|...++.-.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998766543 58889999999999999999999998764
No 196
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.08 E-value=0.002 Score=65.34 Aligned_cols=63 Identities=19% Similarity=0.000 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch---hHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG---AYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 504 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
...|+.+..+|...|++++|+..++++++++|++.. +|+.++.+|...|+.++|+..+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555543 255555555555555555555555554
No 197
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.041 Score=54.57 Aligned_cols=88 Identities=11% Similarity=0.051 Sum_probs=46.0
Q ss_pred ccCCHHHHHHHHHHhHHh--cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 043060 448 HAGLLDIGRQYFNAMIQD--YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELG 523 (707)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~--~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A 523 (707)
+.|.+..|.+.|.+.+.. ....|+...|........+.|++++|+.--++. .+.|. ...+..-..++...+++++|
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~A 340 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEA 340 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544311 012233344555555566777777777766554 33322 22222223344556777777
Q ss_pred HHHHHHHHccCC
Q 043060 524 ESVAKHLLELEP 535 (707)
Q Consensus 524 ~~~~~~~~~~~p 535 (707)
.+-++++.+...
T Consensus 341 V~d~~~a~q~~~ 352 (486)
T KOG0550|consen 341 VEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHhhcc
Confidence 777777776654
No 198
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.05 E-value=0.0012 Score=43.99 Aligned_cols=42 Identities=31% Similarity=0.568 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHH
Q 043060 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSN 546 (707)
Q Consensus 505 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 546 (707)
.+|..+..++...|++++|+++++++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468889999999999999999999999999999999888764
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.96 E-value=0.021 Score=47.69 Aligned_cols=92 Identities=16% Similarity=0.202 Sum_probs=63.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHH
Q 043060 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDD--ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLL 482 (707)
Q Consensus 406 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~ 482 (707)
.+..++-..|+.++|+.+|++....|..... ..+..+.+++...|++++|..+++.....+.-.+ +......+.-++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3456677789999999999999888876553 3677778888888889998888888876432211 222223344566
Q ss_pred HHcCCHHHHHHHHHh
Q 043060 483 GRAGLFDEAEALLKT 497 (707)
Q Consensus 483 ~~~g~~~~A~~~~~~ 497 (707)
...|+.++|++.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 778888888776644
No 200
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.95 E-value=0.0031 Score=47.74 Aligned_cols=64 Identities=27% Similarity=0.415 Sum_probs=53.5
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHH
Q 043060 480 DLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVL 543 (707)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 543 (707)
..|.+.+++++|.+.++++ ...|+ ...|......+...|++++|.+.++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 5678889999999999886 56665 7788888899999999999999999999999987655443
No 201
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.91 E-value=0.019 Score=56.58 Aligned_cols=153 Identities=12% Similarity=0.028 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----HHCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHh---cCC-CCChH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRM----IGEGLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQD---YKI-SPKLQ 473 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~-~p~~~ 473 (707)
.|..|...|.-.|+++.|+..-+.- ++-|-+.. ...+..+.+++.-.|+++.|.+.|+....- .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 3444555555566666666544322 12222221 225556666666677777777666543210 011 12233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccC--CCCc----h
Q 043060 474 HYGCMVDLLGRAGLFDEAEALLKTM-------E-MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE--PENP----G 539 (707)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~~~----~ 539 (707)
..-+|.+.|.-...+++|+..+.+- + .--....+-+|..++...|..++|...+++.++.. ..++ .
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT 356 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT 356 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence 4455667777777777777776652 1 11235667788999999999999988888777532 2222 2
Q ss_pred hHHHHHHHhhhcCChh
Q 043060 540 AYVLLSNMYAGAGRWD 555 (707)
Q Consensus 540 ~~~~l~~~~~~~g~~~ 555 (707)
.-..|++.-...|.-+
T Consensus 357 ar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 357 ARDNLSDLILELGQED 372 (639)
T ss_pred hhhhhHHHHHHhCCCc
Confidence 3445555555555443
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.91 E-value=0.017 Score=55.94 Aligned_cols=93 Identities=15% Similarity=0.130 Sum_probs=56.2
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCh
Q 043060 447 NHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM----EMKPD-AAIWTSLLGACRVHGRL 520 (707)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~g~~ 520 (707)
.+.|++++|...|+.+.+.+.-.+ ....+-.+...|...|++++|...|+.+ +..|. ...+..++..+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 334555555555555554331111 0133445666667777777777776665 22222 45555666777788899
Q ss_pred hHHHHHHHHHHccCCCCch
Q 043060 521 ELGESVAKHLLELEPENPG 539 (707)
Q Consensus 521 ~~A~~~~~~~~~~~p~~~~ 539 (707)
+.|...++++++..|++..
T Consensus 234 ~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHHHCcCCHH
Confidence 9999999998888887653
No 203
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0084 Score=59.53 Aligned_cols=89 Identities=16% Similarity=0.118 Sum_probs=71.8
Q ss_pred HHHHHcCCHHHHHHHHHhC--------CCC---------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHH
Q 043060 480 DLLGRAGLFDEAEALLKTM--------EMK---------PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV 542 (707)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~--------~~~---------p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 542 (707)
+.|.+.|++..|...|++. +.. .-..+++.|...+.+.+++..|++...++++++|+|..+.+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 3455666666666655552 111 12457788888899999999999999999999999999999
Q ss_pred HHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 543 LLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 543 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
.-+.+|...|.++.|+..|+++.+..
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 99999999999999999999998743
No 204
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.84 E-value=0.017 Score=59.43 Aligned_cols=116 Identities=11% Similarity=0.104 Sum_probs=77.3
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK------TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 442 (707)
+......+++......+++++..++.+.... -..+..++|..|.+.|..++++.+++.=...|+-||..||+.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4445555666666666777777777665321 1224457788888888888888888877778888888888888
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc
Q 043060 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485 (707)
Q Consensus 443 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 485 (707)
+..+.+.|++..|.++...|... +...+..++..-+..+.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 88888888888888877776654 4444545554434444433
No 205
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.81 E-value=0.7 Score=46.73 Aligned_cols=408 Identities=12% Similarity=0.097 Sum_probs=217.5
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCC---eehHHHHHHHHHhCCChhHHHHHHHhCccccC
Q 043060 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD---AVSYTALITGYASRGYLDDARQLFDEMPIREE 227 (707)
Q Consensus 151 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 227 (707)
++-+.+.+. +.|...|-.||.-|...|..++.++++++|..+- ..+|...+++-....++.....+|.+-+. .
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~--k 105 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLK--K 105 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHh--h
Confidence 555555433 6778899999999999999999999999998773 45799999998899999999999998854 3
Q ss_pred CCCCCHhhHHHHHHHHhccCCch------HHHHHHHHHHH-cCCCc-hhHHHHHHHHHH---HhcC------CHHHHHHH
Q 043060 228 NFVPNESTVVTVLSACAHMGSLE------LGNWVCSLIEG-HGLGS-NLHVTNALIDMY---SKCG------DLVKARDL 290 (707)
Q Consensus 228 ~~~p~~~t~~~ll~~~~~~g~~~------~a~~~~~~~~~-~g~~~-~~~~~~~li~~~---~~~g------~~~~A~~~ 290 (707)
.+ +...|..-+.--.+....- ...+.++.++. .++.| ....|+..++.. -..| +++..++.
T Consensus 106 ~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 SL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred hc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 33 3344444444333333221 12344555444 23443 233455544432 2223 45556667
Q ss_pred HHhcCCC----------ChhhHHHHHHHHHh-------cCCHHHHHHHHHHHhh--cCCCC----ChhhHHhHHH-----
Q 043060 291 FESIEKR----------DVISWNVMIGGYTH-------TSDYKEALMLFRQMLQ--SNIEP----NDVTFLSVLP----- 342 (707)
Q Consensus 291 ~~~~~~~----------~~~~~~~li~~~~~-------~g~~~~A~~~~~~m~~--~g~~p----~~~t~~~ll~----- 342 (707)
|.++..- |-..|..-++.... .--+-.|.+.+++... .|... +..|++.+-+
T Consensus 184 Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~ 263 (660)
T COG5107 184 YMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSN 263 (660)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccch
Confidence 7776642 11222222221111 1113455566665543 23221 2223322211
Q ss_pred ------HHhcc-----CC--chHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC--CCh------
Q 043060 343 ------ACAYL-----GA--LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY--KTL------ 401 (707)
Q Consensus 343 ------~~~~~-----~~--~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~------ 401 (707)
--... ++ .....-+|++++..-+- ...+|--.-.-+...++-+.|....+.... |+.
T Consensus 264 WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~--~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse 341 (660)
T COG5107 264 WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYY--AEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSE 341 (660)
T ss_pred hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHH
Confidence 10000 00 01111122333222222 333343333344455666777776654321 110
Q ss_pred ---------H---HHHHHHHHHHH---cCCHHHHHHH------HHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHH
Q 043060 402 ---------A---SWNAMISGLAM---HGKADKALSL------FSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFN 460 (707)
Q Consensus 402 ---------~---~~~~li~~~~~---~g~~~~A~~~------~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 460 (707)
. +|..++..+.+ .++.+.+-.. ..+..-....--...|...+++-.+..-++.|+.+|-
T Consensus 342 ~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~ 421 (660)
T COG5107 342 YYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFI 421 (660)
T ss_pred HHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 0 12222222211 1111111110 0111000011112345556666677777888888888
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHccCC--C
Q 043060 461 AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT-MEMKPDA-AIWTSLLGACRVHGRLELGESVAKHLLELEP--E 536 (707)
Q Consensus 461 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p--~ 536 (707)
+..+..-+.+++..+++++.-++ .|+..-|..+|+- |..-||. ..-.-.+.-+...++-+.|..+|+..++.-. .
T Consensus 422 k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q 500 (660)
T COG5107 422 KLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQ 500 (660)
T ss_pred HHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhh
Confidence 88765225678888888887654 6777888888876 4434563 3334566666777888888888886654221 2
Q ss_pred CchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 537 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
-...|..+++--..-|+...+..+-++|.+.
T Consensus 501 ~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 501 LKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred hhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 2457777777777778887777776666654
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.19 Score=46.88 Aligned_cols=229 Identities=11% Similarity=0.042 Sum_probs=120.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHH-hccCC-ch-HHHHHHHHHHHhCCCCCcHHHHhHH
Q 043060 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC-AYLGA-LD-LGKWIHAYIDKNHQKLNNVSLWTSL 376 (707)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~-~~-~a~~~~~~~~~~~~~~~~~~~~~~l 376 (707)
..|+.-+..+.+....++|..-+....+.+ .||-. |-..-..+ .+.|. +. ..+-+|..+.+.-..+ +++|
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnp-----qesL 142 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNP-----QESL 142 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHhcCCc-----HHHH
Confidence 346666666777777777665555443321 11110 00000000 01121 11 2234555555543333 6777
Q ss_pred hhHHHhcCCHHHHHHHHhcCCC--CChHH--------HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 043060 377 IDMYAKCGNIKAAEQVFDGMGY--KTLAS--------WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446 (707)
Q Consensus 377 i~~y~~~g~~~~A~~~~~~~~~--~~~~~--------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 446 (707)
...|.-..-+++-...|+.-.. ..+.. -+.++..+.-+|.+.-.+.++++.++..-+-+......|.+.-
T Consensus 143 dRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~ 222 (366)
T KOG2796|consen 143 DRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRIS 222 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 7777766666666666654332 22333 3556666666778888888888888855455666667777777
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHHHHHcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCC
Q 043060 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYG-----CMVDLLGRAGLFDEAEALLKTMEMK-P-DAAIWTSLLGACRVHGR 519 (707)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~ll~~~~~~g~ 519 (707)
.+.|+.+.|..+|+...+.. -..+....+ .+...|.-++++.+|...+.++... | |+..-|.=.-...-.|+
T Consensus 223 MQ~GD~k~a~~yf~~vek~~-~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~ 301 (366)
T KOG2796|consen 223 MQIGDIKTAEKYFQDVEKVT-QKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK 301 (366)
T ss_pred HhcccHHHHHHHHHHHHHHH-hhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH
Confidence 88888888888888665431 112222222 2223344455566666666555221 2 23333333323334455
Q ss_pred hhHHHHHHHHHHccCCC
Q 043060 520 LELGESVAKHLLELEPE 536 (707)
Q Consensus 520 ~~~A~~~~~~~~~~~p~ 536 (707)
...|.+..+.+++..|.
T Consensus 302 l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 302 LKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHHHhccCCc
Confidence 66666666666665553
No 207
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.79 E-value=0.012 Score=60.61 Aligned_cols=117 Identities=12% Similarity=0.182 Sum_probs=73.9
Q ss_pred CchhhhhhhchhhcccCCCChHHHHHHHhcCCC-CC-----cchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccH
Q 043060 60 NTQFALSKLIEICAVSPFGDLSYALLVFETIRE-PN-----QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTF 133 (707)
Q Consensus 60 ~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 133 (707)
-+......++ +......+++++..++-+... |+ ..+..++|+.|...|..+++++++..=...|+-||.+|+
T Consensus 64 vS~~dld~fv--n~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 64 VSSLDLDIFV--NNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CcHHHHHHHH--hhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3444455555 555555666666666655542 11 123457777777777777777777777777777777777
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 043060 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN 178 (707)
Q Consensus 134 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 178 (707)
+.|+..+.+.|++..|.++...|...+...++.++..-+..+.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777776666555555555444444444
No 208
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.78 E-value=0.06 Score=56.28 Aligned_cols=229 Identities=17% Similarity=0.171 Sum_probs=124.4
Q ss_pred CCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHH
Q 043060 230 VPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309 (707)
Q Consensus 230 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 309 (707)
.|..+.+.+-+..+...|.+++|.++-.. .....-|..|..-....=+++-|++.|.++.
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iacl------gVv~~DW~~LA~~ALeAL~f~~ARkAY~rVR-------------- 612 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACL------GVTDTDWRELAMEALEALDFETARKAYIRVR-------------- 612 (1081)
T ss_pred ecccccccccchhhhhccchhhhhccccc------ceecchHHHHHHHHHhhhhhHHHHHHHHHHh--------------
Confidence 34444455555556666666665544321 1122234444443344444555555444432
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHH
Q 043060 310 THTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389 (707)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 389 (707)
.-.+-+.+.-+++|++.|-.|+.... ...|+..|.+.+|-.+|.. .|.+ |.-+.+|.....++.|
T Consensus 613 --dl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e-------nRAlEmyTDlRMFD~a 677 (1081)
T KOG1538|consen 613 --DLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGHE-------NRALEMYTDLRMFDYA 677 (1081)
T ss_pred --ccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCch-------hhHHHHHHHHHHHHHH
Confidence 22233445556788888888887653 3446677888887777653 3443 3445666666667777
Q ss_pred HHHHhcCCCC-------ChHHH-------HHHHHHHHHcCCHHHHHHHHH------HHHHCCCC---CCHhHHHHHHHHH
Q 043060 390 EQVFDGMGYK-------TLASW-------NAMISGLAMHGKADKALSLFS------RMIGEGLQ---PDDITFVGVLSAC 446 (707)
Q Consensus 390 ~~~~~~~~~~-------~~~~~-------~~li~~~~~~g~~~~A~~~~~------~m~~~g~~---p~~~t~~~ll~a~ 446 (707)
.+++...... .-..| .+....+...|+.++|+.+.- -+.+-+-+ .+..+...+..-+
T Consensus 678 QE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~yl 757 (1081)
T KOG1538|consen 678 QEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYL 757 (1081)
T ss_pred HHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHH
Confidence 7666543211 00112 122333455566666655421 11111112 2233455555555
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC
Q 043060 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME-MKPD 503 (707)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~ 503 (707)
.+...+.-|-++|.+|-. ...++++....+++++|..+-++.+ ..||
T Consensus 758 k~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~d 805 (1081)
T KOG1538|consen 758 KKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDD 805 (1081)
T ss_pred hhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccc
Confidence 566677778888877732 2357788888899999999888874 3444
No 209
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.75 E-value=1.1 Score=47.97 Aligned_cols=205 Identities=10% Similarity=0.080 Sum_probs=107.9
Q ss_pred CCChhHHHHHHHHHHhCCChhHHHHHHhcCCCC-Ce------------ehHHHHHHHHHhCCChhHHHHHHHhCccccCC
Q 043060 162 ESDPFVHTSLINMYAQNGELESARLVFNKSSLR-DA------------VSYTALITGYASRGYLDDARQLFDEMPIREEN 228 (707)
Q Consensus 162 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 228 (707)
.|.+..|..|.......-.++.|+..|-+...- .+ ..-.+=|.+| -|++++|.++|-+|-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 577888888888777777888888887554321 11 0111112222 478888888888774311
Q ss_pred CCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCch----hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHH
Q 043060 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN----LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304 (707)
Q Consensus 229 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 304 (707)
..+...-+.|++-...+++. .-|-..| ...++.+.+.++....+++|.+.|..-... ..
T Consensus 765 ---------LAielr~klgDwfrV~qL~r---~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~ 827 (1189)
T KOG2041|consen 765 ---------LAIELRKKLGDWFRVYQLIR---NGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----EN 827 (1189)
T ss_pred ---------hhHHHHHhhhhHHHHHHHHH---ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----Hh
Confidence 12233344455544433332 1111111 235566666666666666666666543211 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcC
Q 043060 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384 (707)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 384 (707)
.+.+|-+..++++-..+-+.+ +-|...+-.+..++.+.|.-++|.+.|-. .+.. .+-+..+....
T Consensus 828 ~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p-------kaAv~tCv~Ln 892 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP-------KAAVHTCVELN 892 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc-------HHHHHHHHHHH
Confidence 344444444444433333332 33444455556666777766666555432 1211 23455666677
Q ss_pred CHHHHHHHHhcCCCCChH
Q 043060 385 NIKAAEQVFDGMGYKTLA 402 (707)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~ 402 (707)
+|.+|.++-++..-|.+.
T Consensus 893 QW~~avelaq~~~l~qv~ 910 (1189)
T KOG2041|consen 893 QWGEAVELAQRFQLPQVQ 910 (1189)
T ss_pred HHHHHHHHHHhccchhHH
Confidence 777777777766555443
No 210
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.71 E-value=0.028 Score=45.19 Aligned_cols=80 Identities=14% Similarity=0.173 Sum_probs=62.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHhccC--------CHHHHHHHHHHhHHhcCCCCChHH
Q 043060 404 WNAMISGLAMHGKADKALSLFSRMIGEGL-QPDDITFVGVLSACNHAG--------LLDIGRQYFNAMIQDYKISPKLQH 474 (707)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~ 474 (707)
-...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+..+.. .+-+.+.+|+.|... +++|+..+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHH
Confidence 34456666677999999999999999999 899999999998876532 344566778888765 78888888
Q ss_pred HHHHHHHHHH
Q 043060 475 YGCMVDLLGR 484 (707)
Q Consensus 475 ~~~li~~~~~ 484 (707)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888776654
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.61 E-value=0.002 Score=49.53 Aligned_cols=63 Identities=16% Similarity=0.246 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcc----CCC---CchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 504 AAIWTSLLGACRVHGRLELGESVAKHLLEL----EPE---NPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 504 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
..+++.+...+...|++++|+..+++++++ +++ -..++..++.+|...|++++|.+++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 446667777777777777777777777653 222 234677777888888888888887776543
No 212
>PRK11906 transcriptional regulator; Provisional
Probab=96.53 E-value=0.22 Score=51.17 Aligned_cols=159 Identities=13% Similarity=0.129 Sum_probs=108.1
Q ss_pred HHH--HHHHHHHHHc-----CCHHHHHHHHHHHHH-CCCCCCHh-HHHHHHHHHh---------ccCCHHHHHHHHHHhH
Q 043060 402 ASW--NAMISGLAMH-----GKADKALSLFSRMIG-EGLQPDDI-TFVGVLSACN---------HAGLLDIGRQYFNAMI 463 (707)
Q Consensus 402 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~~~ 463 (707)
..| ..++.+.... ...+.|+.+|.+... +.+.|+.. .|..+..++. ......+|.+.-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 5566665442 235678889999882 22677755 4433333222 1234556677776666
Q ss_pred HhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhH
Q 043060 464 QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541 (707)
Q Consensus 464 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 541 (707)
+ --+-|......+..++.-.|+++.|..+|++. ...|| ..+|......+.-.|+.++|.+.++++++++|....+-
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 5 33347777777888888888899999999987 67787 77788888888889999999999999999999765444
Q ss_pred H--HHHHHhhhcCChhhHHHHHHH
Q 043060 542 V--LLSNMYAGAGRWDDVATIRTR 563 (707)
Q Consensus 542 ~--~l~~~~~~~g~~~~a~~~~~~ 563 (707)
. ..++.|+..+ .++|++++-+
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHhh
Confidence 4 3344566554 5677776643
No 213
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.51 E-value=0.028 Score=51.17 Aligned_cols=97 Identities=13% Similarity=0.225 Sum_probs=71.5
Q ss_pred HHHHhcC--CCCChHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc-------------
Q 043060 390 EQVFDGM--GYKTLASWNAMISGLAM-----HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA------------- 449 (707)
Q Consensus 390 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 449 (707)
...|+.. ..++-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 45677777777777764 367777788889999999999999999999887542
Q ss_pred ---CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC
Q 043060 450 ---GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487 (707)
Q Consensus 450 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 487 (707)
.+-+-|+.+++.|.. +|+.||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234567778888854 5888888888888887776654
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.22 Score=46.47 Aligned_cols=169 Identities=13% Similarity=0.073 Sum_probs=113.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC--C--------hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhH
Q 043060 271 TNALIDMYSKCGDLVKARDLFESIEKR--D--------VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSV 340 (707)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 340 (707)
++.|.+.|.-...+++-...|+.=..+ . ...-+.++..+...|.+.-.+.++.+.++...+-++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 455555555555555555555443221 2 223456677777788888888889988887666677777888
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCC----cHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHH
Q 043060 341 LPACAYLGALDLGKWIHAYIDKNHQKLN----NVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAM 413 (707)
Q Consensus 341 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 413 (707)
.+.-.+.|+.+.+...++.+.+...... ...+.......|.-.+++..|...|.++.. .|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 8888889999999999987776533320 233333444456667788888888887754 356666666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 043060 414 HGKADKALSLFSRMIGEGLQPDDITFVG 441 (707)
Q Consensus 414 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 441 (707)
.|+..+|++..+.|.+ ..|...+-.+
T Consensus 299 lg~l~DAiK~~e~~~~--~~P~~~l~es 324 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQ--QDPRHYLHES 324 (366)
T ss_pred HHHHHHHHHHHHHHhc--cCCccchhhh
Confidence 7899999999999988 5666554443
No 215
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.46 E-value=0.64 Score=44.72 Aligned_cols=62 Identities=11% Similarity=0.048 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCChh-hH---HhHHHHHhccCCchHHHHHHHHHHHhCCCC
Q 043060 304 VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV-TF---LSVLPACAYLGALDLGKWIHAYIDKNHQKL 367 (707)
Q Consensus 304 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 367 (707)
.....+.+.|++++|++.|+++...- |+.. .. -.+..++.+.++++.|...++..++..+..
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~ 102 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 102 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC
Confidence 33444555666666666666666532 2221 11 122334455555555555555555554443
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.45 E-value=0.3 Score=49.36 Aligned_cols=160 Identities=19% Similarity=0.149 Sum_probs=89.3
Q ss_pred HHhhHHHhcCCHHHHHHHHhcCCCC---C----hHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 043060 375 SLIDMYAKCGNIKAAEQVFDGMGYK---T----LASWNAMISGLAM---HGKADKALSLFSRMIGEGLQPDDITFVGVLS 444 (707)
Q Consensus 375 ~li~~y~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 444 (707)
.|+-.|-...+++...++++.+... + ...-...+-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444466666666666666665432 1 1112223334445 6777777777777655555566666665555
Q ss_pred HHhc---------cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHH----HHHHHH---Hh-C------CCC
Q 043060 445 ACNH---------AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD----EAEALL---KT-M------EMK 501 (707)
Q Consensus 445 a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~-~------~~~ 501 (707)
.|-. ....++|...|.+. +.+.|+..+--.++.++...|... +..++- .. . .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 4421 22356666666644 344454433222333333444321 222222 11 1 112
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 043060 502 PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537 (707)
Q Consensus 502 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 537 (707)
.|-..+.+++.++.-.|+.+.|.+.+++++++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 355666789999999999999999999999998754
No 217
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.44 E-value=1.6 Score=46.19 Aligned_cols=182 Identities=14% Similarity=0.174 Sum_probs=122.2
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK---TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 445 (707)
+...|...++.-.+.|+.+.+.-+|++..-+ =...|--.+.-....|+.+-|..++....+--++-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 5667777888888888888888888876543 2235655555555668888888888777664333222222222223
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHHcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 043060 446 CNHAGLLDIGRQYFNAMIQDYKISPKL-QHYGCMVDLLGRAGLFDEAE---ALLKTM-EMKPDAAIWTSLLG-----ACR 515 (707)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll~-----~~~ 515 (707)
+...|+++.|..+++.+.+++ |+. ..-.--+....|.|..+.+. +++... +.+-+..+...+.- .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 456789999999999998753 543 33334566778899999888 555443 22222222222222 234
Q ss_pred hcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCC
Q 043060 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGR 553 (707)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 553 (707)
..++.+.|..++.++.+..|++...|..+++.....+-
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 46889999999999999999999999999888776653
No 218
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.40 E-value=0.14 Score=42.33 Aligned_cols=140 Identities=14% Similarity=0.186 Sum_probs=82.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHH
Q 043060 412 AMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491 (707)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 491 (707)
.-.|..++..++..+.... .+..-++.++.-....-+-+-..+.++.+-+-+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 3456677777777776652 233455555554444555555555555554332222 23333333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCc
Q 043060 492 EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570 (707)
Q Consensus 492 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 570 (707)
..-+-.++ .+......-++....+|+-+.-.+++..+.+-+..+|.....++++|.+.|+..++.+++.+.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33333332 134455566788889999999999999988766668899999999999999999999999999999984
No 219
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.37 E-value=1.2 Score=44.22 Aligned_cols=273 Identities=17% Similarity=0.122 Sum_probs=128.4
Q ss_pred CChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHh--ccCCchHHHHHHHHHHHcCCCchhHH--HHHHHHHHHhcCCHH
Q 043060 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACA--HMGSLELGNWVCSLIEGHGLGSNLHV--TNALIDMYSKCGDLV 285 (707)
Q Consensus 210 g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~--~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~ 285 (707)
|+-..|.++-.+.. .-+.-|...+..++.+-. -.|+.+.+++-|+.|... |.... ...|.----+.|..+
T Consensus 98 Gda~lARkmt~~~~---~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 98 GDASLARKMTARAS---KLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred CchHHHHHHHHHHH---hhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence 44444544444431 123334444444544433 236666666666666532 11111 112222234567777
Q ss_pred HHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCCChhh--HHhHHHHHh---ccCCchHHHHH
Q 043060 286 KARDLFESIEKR---DVISWNVMIGGYTHTSDYKEALMLFRQMLQSN-IEPNDVT--FLSVLPACA---YLGALDLGKWI 356 (707)
Q Consensus 286 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t--~~~ll~~~~---~~~~~~~a~~~ 356 (707)
.|+..-++.-.. -.-.|...+...+..|+|+.|+++++.-.... +.++..- -..++.+-+ -..+...++..
T Consensus 172 aAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 172 AARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 777666655432 23467788888889999999999888766533 3333321 112222211 11233444444
Q ss_pred HHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCC
Q 043060 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG--YKTLASWNAMISGLAMHGKADKALSLFSRMIG-EGLQ 433 (707)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~ 433 (707)
-....+..+.. ...--.-...+.+.|++.++-.+++.+= +|.+..|. +-.+.+.|+ .++.-+++... ..++
T Consensus 252 A~~a~KL~pdl--vPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gd--ta~dRlkRa~~L~slk 325 (531)
T COG3898 252 ALEANKLAPDL--VPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGD--TALDRLKRAKKLESLK 325 (531)
T ss_pred HHHHhhcCCcc--chHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCC--cHHHHHHHHHHHHhcC
Confidence 44444443332 1112223445666666666666666552 22222222 112223333 33333333222 1145
Q ss_pred CCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH-cCCHHHHHHHHHh
Q 043060 434 PDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR-AGLFDEAEALLKT 497 (707)
Q Consensus 434 p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~ 497 (707)
||.. +...+..+-...|++..|..--+... ...|....|..|.+.-.. .|+-.++...+.+
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 5543 44445555555555555554444332 234555555555554333 2555555555444
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.33 E-value=0.35 Score=45.20 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=38.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCc---hhHHHHHHHhhhcCChhhHHH
Q 043060 510 LLGACRVHGRLELGESVAKHLLELEPENP---GAYVLLSNMYAGAGRWDDVAT 559 (707)
Q Consensus 510 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~ 559 (707)
+..-|.+.|.+..|..-++.+++.-|+.+ .+...++.+|.+.|..+.+..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 45678889999999999999999988755 356778888999999885543
No 221
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.32 E-value=0.089 Score=53.91 Aligned_cols=195 Identities=16% Similarity=0.139 Sum_probs=107.3
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHH
Q 043060 413 MHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492 (707)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 492 (707)
+..+.+.-+++-++.++ +.||..+...++ +-.....+.++.++|++..+. + ...+..- ......|. ..
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~---~~ 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGH---FW 247 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccc---hh
Confidence 34556666777777777 777766433333 333455678888888876652 0 0000000 00000111 11
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC--CchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCc
Q 043060 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE--NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570 (707)
Q Consensus 493 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 570 (707)
+.+.+-..+|-..+-..|...+.+.|+.++|.+.++++++..|. +..+...|+.++...+++.++..++.+-.+....
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 11111112223444456777778889999999999998887664 4567888899999999999999888887654443
Q ss_pred cCCcccEEeECCEEEEEEeCCCCCcC-------hHHHHHHHHHHHHHHHHcCCccCCc
Q 043060 571 KVPGCSSIEVGSVVHEFLVGDKVHPQ-------SKHIYEMLDEIDALLEKSGFVPDTS 621 (707)
Q Consensus 571 ~~~~~s~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~l~~~m~~~g~~pd~~ 621 (707)
|...++|...- +..-..+|+..|+ .......++.+.+.++..+.+|+-.
T Consensus 328 kSAti~YTaAL--LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 328 KSATICYTAAL--LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred chHHHHHHHHH--HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 33333332100 0000112222221 1122234567778888888888743
No 222
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.32 E-value=0.018 Score=52.41 Aligned_cols=67 Identities=12% Similarity=0.119 Sum_probs=42.7
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHhc----------------cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 043060 114 AIKFYVRMILSGFVPNTYTFPFILKSCAK----------------ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ 177 (707)
Q Consensus 114 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----------------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 177 (707)
....+..|.+.|+.-|..+|+.||..+=+ -.+.+-|.+++++|...|+-||..++..|++.+++
T Consensus 71 I~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 71 IYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 33344444555555555555555544322 12346688889999999999999999988888866
Q ss_pred CCC
Q 043060 178 NGE 180 (707)
Q Consensus 178 ~g~ 180 (707)
.+.
T Consensus 151 ~s~ 153 (228)
T PF06239_consen 151 KSH 153 (228)
T ss_pred ccH
Confidence 553
No 223
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.24 E-value=0.89 Score=48.06 Aligned_cols=200 Identities=14% Similarity=0.153 Sum_probs=92.8
Q ss_pred HHHHHHHHhccCChHHHHHH--HHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCC
Q 043060 133 FPFILKSCAKISAISEGKQI--HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210 (707)
Q Consensus 133 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 210 (707)
++..=++|.+-.+..--+-+ ++++.+.|-.|+... +...++-.|++.+|-++|.+ .|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cC
Confidence 33344455544444332222 345556665565433 33445566788888777754 45
Q ss_pred ChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHH
Q 043060 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDL 290 (707)
Q Consensus 211 ~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 290 (707)
.-..|+++|..|.. --..+-+...|+.++-+.+...-.+. ..++.--.+-..++...|+.++|..+
T Consensus 660 ~enRAlEmyTDlRM------------FD~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i 725 (1081)
T KOG1538|consen 660 HENRALEMYTDLRM------------FDYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEI 725 (1081)
T ss_pred chhhHHHHHHHHHH------------HHHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhh
Confidence 55666666666621 11122233334433333332221111 11111112334455555665555444
Q ss_pred HHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcH
Q 043060 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNV 370 (707)
Q Consensus 291 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 370 (707)
. ..+|-.+-++++-+++-. .+..+...+..-+-+...+..|-++|..+-.
T Consensus 726 ~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-------- 775 (1081)
T KOG1538|consen 726 C------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD-------- 775 (1081)
T ss_pred h------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc--------
Confidence 2 222222333333322211 1223333333334444555566666654421
Q ss_pred HHHhHHhhHHHhcCCHHHHHHHHhcCCCC
Q 043060 371 SLWTSLIDMYAKCGNIKAAEQVFDGMGYK 399 (707)
Q Consensus 371 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 399 (707)
..+++++....++|.+|..+-++.++-
T Consensus 776 --~ksiVqlHve~~~W~eAFalAe~hPe~ 802 (1081)
T KOG1538|consen 776 --LKSLVQLHVETQRWDEAFALAEKHPEF 802 (1081)
T ss_pred --HHHHhhheeecccchHhHhhhhhCccc
Confidence 245667777777777777777776643
No 224
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.20 E-value=1.7 Score=44.19 Aligned_cols=65 Identities=12% Similarity=0.100 Sum_probs=42.5
Q ss_pred cCCCCC----hHHHHHHHHH--HHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043060 466 YKISPK----LQHYGCMVDL--LGRAGLFDEAEALLKTM-EMKPDAAIWTSLLGACRVHGRLELGESVAKHL 530 (707)
Q Consensus 466 ~~~~p~----~~~~~~li~~--~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 530 (707)
-|++|- ...-|.|.++ +...|++.++.-.-.=+ .+.|++.++..++-......++++|...+..+
T Consensus 450 ~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 450 VGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred cCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 366552 2345555554 45677777765433322 56788888888888888888888888776543
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.18 E-value=0.0095 Score=45.73 Aligned_cols=60 Identities=20% Similarity=0.237 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 043060 474 HYGCMVDLLGRAGLFDEAEALLKTM-------E-MKPD-AAIWTSLLGACRVHGRLELGESVAKHLLEL 533 (707)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 533 (707)
+|+.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|++++|++.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555556666666666666665553 1 1133 557777888888888888888888887654
No 226
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.11 E-value=1.3 Score=41.93 Aligned_cols=198 Identities=19% Similarity=0.190 Sum_probs=130.6
Q ss_pred HHHHhHHhhHHHhcCCHHHHHHHHhcCC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 043060 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMG-----YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444 (707)
Q Consensus 370 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 444 (707)
..........+...+.+..+...+.... ......+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 4455666667777777777777666543 23444566666667777777888888887776332221 12222222
Q ss_pred -HHhccCCHHHHHHHHHHhHHhcCC--CCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcC
Q 043060 445 -ACNHAGLLDIGRQYFNAMIQDYKI--SPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD--AAIWTSLLGACRVHG 518 (707)
Q Consensus 445 -a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g 518 (707)
.+...|+++.+...+..... ... ......+......+...++.++|...+.+. ...|+ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 67778888888888887743 111 123334444444566778888888888775 33333 567777888888888
Q ss_pred ChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 519 RLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 519 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+++.|...+.......|.....+..+...+...|.++++...+.+..+...
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 888888888888888887556677777777777778888888777766443
No 227
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.11 E-value=0.62 Score=43.53 Aligned_cols=143 Identities=15% Similarity=0.160 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD----ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 478 (707)
.+-.....+.+.|++++|++.|+++... -|+. .....++.++.+.|+++.|...++..++.+.-.|... +...
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y 83 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALY 83 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHH
Confidence 3444555666778888888888887763 2221 2445566677777777777777777776654444331 1111
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch-----------------hH
Q 043060 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG-----------------AY 541 (707)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----------------~~ 541 (707)
..+.+........ + ......+....|...++.+++..|+++. .-
T Consensus 84 ~~g~~~~~~~~~~---~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e 144 (203)
T PF13525_consen 84 MLGLSYYKQIPGI---L----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHE 144 (203)
T ss_dssp HHHHHHHHHHHHH---H-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccc---h----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHH
Confidence 1111100000000 0 0012223345566666666666665442 22
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 542 VLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 542 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
..++..|.+.|.+..|..-++.+.+.
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34678899999999999999998874
No 228
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.10 E-value=0.037 Score=45.50 Aligned_cols=90 Identities=23% Similarity=0.198 Sum_probs=75.9
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccC-CCC---chhHHHHHHHhhhcCC
Q 043060 480 DLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELE-PEN---PGAYVLLSNMYAGAGR 553 (707)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~ 553 (707)
-++...|+++.|++.|.+. .+-|. ...||.-..+++-+|+.++|..-+++++++. |.. -.+|+.-+.+|-..|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3577889999999999885 44454 8899999999999999999999999999975 432 2467888899999999
Q ss_pred hhhHHHHHHHHhhCCC
Q 043060 554 WDDVATIRTRLNDKGM 569 (707)
Q Consensus 554 ~~~a~~~~~~m~~~~~ 569 (707)
.++|..-|+...+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999999988776
No 229
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.098 Score=50.25 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=17.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043060 400 TLASWNAMISGLAMHGKADKALSLFSRMIG 429 (707)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (707)
|...|-.|...|..+|+++.|...|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 445555555555555555555555555555
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.00 E-value=0.028 Score=49.42 Aligned_cols=62 Identities=24% Similarity=0.283 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 505 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
.+...++..+...|+++.|...+++++..+|-+...|..++.+|...|+..+|.++|+++.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45566777888999999999999999999999999999999999999999999999988853
No 231
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.84 E-value=0.1 Score=49.51 Aligned_cols=91 Identities=16% Similarity=0.198 Sum_probs=48.3
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhH
Q 043060 449 AGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM----EMKPD-AAIWTSLLGACRVHGRLEL 522 (707)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~g~~~~ 522 (707)
.|++..|.+.|...++.|.-.+ ....+-.|...+...|++++|..+|..+ +..|. +..+.-|.....+.|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 3445555555555544331111 1122333566666666666666655554 22233 3455556666666667777
Q ss_pred HHHHHHHHHccCCCCch
Q 043060 523 GESVAKHLLELEPENPG 539 (707)
Q Consensus 523 A~~~~~~~~~~~p~~~~ 539 (707)
|...++++.+..|..+.
T Consensus 234 A~atl~qv~k~YP~t~a 250 (262)
T COG1729 234 ACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHHHHHCCCCHH
Confidence 77777777766666543
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.69 E-value=0.068 Score=54.60 Aligned_cols=96 Identities=13% Similarity=0.047 Sum_probs=62.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHH
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKT-MEMKPDA----AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 545 (707)
+...++.+..+|.+.|++++|+..|++ +.+.|+. .+|..+..+|...|+.++|+..+++++++.+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 556777788888888888888888887 4667773 35888888888888888888888888886321 121111
Q ss_pred H--HhhhcCChhhHHHHHHHHhhCCC
Q 043060 546 N--MYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 546 ~--~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
. .+....+.++..++++.+.+-|.
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1 11223334455556666655554
No 233
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=0.98 Score=41.95 Aligned_cols=87 Identities=14% Similarity=0.158 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcc----CCCCchhH
Q 043060 474 HYGCMVDLLGRAGLFDEAEALLKTME-------MKPD-AAIWTSLLGACRVHGRLELGESVAKHLLEL----EPENPGAY 541 (707)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~ 541 (707)
.|......|.+..++++|-..|.+-. .-|+ -..+-+.|-.+....|+..|++.++..-+. +|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34455567788888888777666531 1233 234555566666777889999888886653 46677777
Q ss_pred HHHHHHhhhcCChhhHHHHH
Q 043060 542 VLLSNMYAGAGRWDDVATIR 561 (707)
Q Consensus 542 ~~l~~~~~~~g~~~~a~~~~ 561 (707)
..|+.+|- .|+.+++.++.
T Consensus 232 enLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHhc-cCCHHHHHHHH
Confidence 77877774 56666665543
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.38 Score=48.21 Aligned_cols=138 Identities=16% Similarity=0.083 Sum_probs=96.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC
Q 043060 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487 (707)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 487 (707)
.+.|.+.|++..|...|++.+.. -.. ...-+.++...... .-...+..+.-+|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~~-----------~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LEY-----------RRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hhc-----------cccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 34567778888888888877652 111 11111122221111 122345567778888999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhH-HHHHHHH
Q 043060 488 FDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV-ATIRTRL 564 (707)
Q Consensus 488 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 564 (707)
+.+|++..++. ...| |.-..---..+|...|+++.|+..|+++++++|.|-.+-..|+.+-.+..+..+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888775 4454 4666667788999999999999999999999999999999998888777666654 7788888
Q ss_pred hhC
Q 043060 565 NDK 567 (707)
Q Consensus 565 ~~~ 567 (707)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 654
No 235
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.61 E-value=0.26 Score=42.05 Aligned_cols=87 Identities=17% Similarity=0.155 Sum_probs=55.1
Q ss_pred HHHHcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch---hHHHHHHHhhhcC
Q 043060 481 LLGRAGLFDEAEALLKTM----EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG---AYVLLSNMYAGAG 552 (707)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g 552 (707)
...+.|++++|.+.|+.+ +..|- ...-..|+.++.+.|++++|...+++.++++|.++. ++...+-++.+..
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 345677778887777776 22222 445566778888888888888888888888876553 3333333344433
Q ss_pred C---------------hhhHHHHHHHHhhC
Q 043060 553 R---------------WDDVATIRTRLNDK 567 (707)
Q Consensus 553 ~---------------~~~a~~~~~~m~~~ 567 (707)
. ..+|..-|+.++++
T Consensus 99 ~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 99 EGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred hhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 3 45666666666554
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=1.4 Score=42.35 Aligned_cols=145 Identities=17% Similarity=0.166 Sum_probs=86.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC
Q 043060 409 SGLAMHGKADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487 (707)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 487 (707)
......|++.+|..+|+..... .|+ ...-..+..++...|+++.|..++..+..+. -.........-+..+.+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhc
Confidence 4456678888888888887773 333 3355566777777888888887777664320 00111112233455555555
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccC--CCCchhHHHHHHHhhhcCChhh
Q 043060 488 FDEAEALLKTMEMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELE--PENPGAYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 488 ~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~ 556 (707)
..+...+-++..-.| |...-..+...+...|+.+.|.+.+-.+++.+ -.+..+-..|+.++.-.|.-+.
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 555555555554455 35555666677777777777777666666543 3455666666666666664443
No 237
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.53 E-value=0.091 Score=49.78 Aligned_cols=93 Identities=20% Similarity=0.310 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----C---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC---CchhHHH
Q 043060 474 HYGCMVDLLGRAGLFDEAEALLKTM----E---MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE---NPGAYVL 543 (707)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~----~---~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~ 543 (707)
.|+.-++ +.+.|++.+|...|... + ..|+..-| |+.++...|+++.|...|..+.+-.|+ -|.++.-
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 4555444 45678899999999885 1 33555555 889999999999999999999986654 5678999
Q ss_pred HHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 544 LSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 544 l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
|+.+..+.|+.++|...++++.++-.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999987654
No 238
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.46 E-value=0.22 Score=42.02 Aligned_cols=50 Identities=10% Similarity=0.210 Sum_probs=34.1
Q ss_pred CCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 043060 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481 (707)
Q Consensus 432 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 481 (707)
..|+..++.+++.+++..+++..|.++.+...+.|+++.+...|..|+.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 56667777777777777777777777777777777766666666666543
No 239
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.35 E-value=0.6 Score=39.87 Aligned_cols=19 Identities=11% Similarity=0.027 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHccCCCCc
Q 043060 520 LELGESVAKHLLELEPENP 538 (707)
Q Consensus 520 ~~~A~~~~~~~~~~~p~~~ 538 (707)
...|...|+++++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 5678888899999889764
No 240
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.26 E-value=2.1 Score=40.51 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=46.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHccCCCCc---hhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 509 SLLGACRVHGRLELGESVAKHLLELEPENP---GAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 509 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
.+..-|.+.|.+..|..-++++++.-|+.+ .++..+..+|...|..++|.+.-+-+...
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 455678889999999999999998766544 45667778899999999998876665543
No 241
>PRK11906 transcriptional regulator; Provisional
Probab=95.23 E-value=0.36 Score=49.64 Aligned_cols=119 Identities=8% Similarity=0.028 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHH---------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 043060 451 LLDIGRQYFNAMIQDYKISPK-LQHYGCMVDLLGR---------AGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHG 518 (707)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 518 (707)
..+.|..+|.+......+.|+ ...|..+..++.. .....+|.++.++. ...| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 467788889988744455664 4555555544332 22345566666654 4555 4777777888788888
Q ss_pred ChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 519 RLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 519 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+++.|...|+++..++|+.+.+|...+....-.|+.++|.+.+++..+..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 899999999999999999999999999999999999999999998766544
No 242
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.18 E-value=6.1 Score=43.24 Aligned_cols=101 Identities=15% Similarity=0.078 Sum_probs=64.7
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhH
Q 043060 138 KSCAKISAISEGKQIHAHVLKLGLES---DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214 (707)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 214 (707)
+.+.+.+.+++|...-.... |..+ -..++..+|..+.-.|++++|-...-.|-..+..-|.-.+.-+...++...
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 34445556666665554432 2333 345677888888888999999988888888888888888888877777654
Q ss_pred HHHHHHhCccccCCCCCCHhhHHHHHHHHhc
Q 043060 215 ARQLFDEMPIREENFVPNESTVVTVLSACAH 245 (707)
Q Consensus 215 A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~ 245 (707)
... -++.... ..+...|..++..+..
T Consensus 442 Ia~---~lPt~~~--rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 442 IAP---YLPTGPP--RLKPLVYEMVLVEFLA 467 (846)
T ss_pred hhc---cCCCCCc--ccCchHHHHHHHHHHH
Confidence 333 3331111 2344566667766655
No 243
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.09 E-value=3 Score=39.23 Aligned_cols=164 Identities=16% Similarity=0.152 Sum_probs=113.9
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCCCC---ChHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCC----CHhHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK---TLASWNAMIS-GLAMHGKADKALSLFSRMIGEGLQP----DDITFV 440 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~ 440 (707)
....+..+...+...++...+.+.+...... +...+..... .+...|+++.|...|.+... ..| ....+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 171 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALL 171 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHH
Confidence 4445556666666667777777777765431 2122333333 67888999999999998865 343 223444
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 043060 441 GVLSACNHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVH 517 (707)
Q Consensus 441 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~ 517 (707)
.....+...++.+.+...+..... .... ....+..+...+...+++++|...+... ...|+ ...+..+...+...
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL 249 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHc
Confidence 444456778899999999988875 2333 4677788888888999999999988886 44454 45566666666677
Q ss_pred CChhHHHHHHHHHHccCCC
Q 043060 518 GRLELGESVAKHLLELEPE 536 (707)
Q Consensus 518 g~~~~A~~~~~~~~~~~p~ 536 (707)
+..+.+...+.+..+..|.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 250 GRYEEALEALEKALELDPD 268 (291)
T ss_pred CCHHHHHHHHHHHHHhCcc
Confidence 7899999999999998886
No 244
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.08 E-value=6.4 Score=42.89 Aligned_cols=330 Identities=14% Similarity=0.100 Sum_probs=183.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHc-CC-CchhHHHHHHH
Q 043060 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH-GL-GSNLHVTNALI 275 (707)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~-~~~~~~~~~li 275 (707)
+-..+|.-++..+.+..|+++-..+.. .-..- ...|.....-+.+..+..+ ..+++.+.+. +. -.+...|....
T Consensus 439 ~~~~vi~Rl~~r~~Y~vaIQva~~l~~--p~~~~-~~Vl~~Wa~~kI~~~d~~d-~~vld~I~~kls~~~~~~iSy~~iA 514 (829)
T KOG2280|consen 439 SEEVVIDRLVDRHLYSVAIQVAKLLNL--PESQG-DRVLLEWARRKIKQSDKMD-EEVLDKIDEKLSAKLTPGISYAAIA 514 (829)
T ss_pred chhhhhHHHHhcchhHHHHHHHHHhCC--ccccc-cHHHHHHHHHHHhccCccc-hHHHHHHHHHhcccCCCceeHHHHH
Confidence 345577888888999999999888732 22121 4455555555555433221 1222222221 11 13445677777
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhcc
Q 043060 276 DMYSKCGDLVKARDLFESIEKR--------DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347 (707)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 347 (707)
.-...+|+.+-|..+.+.=+.. +..-+...+.-..+.|+.+-...++..+...- +...|... .
T Consensus 515 ~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~------l 585 (829)
T KOG2280|consen 515 RRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMT------L 585 (829)
T ss_pred HHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHH------H
Confidence 7778899999999988764432 12223444455556666666666655554321 11111111 1
Q ss_pred CCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcC------CCCChHHHHHHHHHHHHcCC---HH
Q 043060 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM------GYKTLASWNAMISGLAMHGK---AD 418 (707)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~------~~~~~~~~~~li~~~~~~g~---~~ 418 (707)
.+.-.|..++....+.... ..|-+.|-...+...+-.+.-+- ...-..........+++... .+
T Consensus 586 ~~~p~a~~lY~~~~r~~~~-------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 586 RNQPLALSLYRQFMRHQDR-------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEA 658 (829)
T ss_pred HhchhhhHHHHHHHHhhch-------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHH
Confidence 1223344444444442211 11222233222222221111111 01111122233334443332 11
Q ss_pred HH-------HHHHHHHHH-CCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 043060 419 KA-------LSLFSRMIG-EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490 (707)
Q Consensus 419 ~A-------~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 490 (707)
+| +.+.+.+.. .|..-...|.+--+.-+...|+..+|.++-.+. .+ ||...|..-+.+++..+++++
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----ki-pdKr~~wLk~~aLa~~~kwee 733 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----KI-PDKRLWWLKLTALADIKKWEE 733 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----CC-cchhhHHHHHHHHHhhhhHHH
Confidence 22 223333322 133334445666677788889999998886655 33 788888888999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHH
Q 043060 491 AEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563 (707)
Q Consensus 491 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 563 (707)
-+++-+++. .+.-|.-...+|.+.|+.++|.+.+-+.-.+ .-...+|.+.|++.+|.++--+
T Consensus 734 LekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 734 LEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHH
Confidence 888887764 2566777888999999999998887654222 1577889999999999876443
No 245
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.07 E-value=1.1 Score=44.02 Aligned_cols=122 Identities=13% Similarity=0.073 Sum_probs=61.3
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCC----CCCcHHHHhHHhhHHHhcCCHHHHHHHHhcC-------CCCChH------
Q 043060 340 VLPACAYLGALDLGKWIHAYIDKNHQ----KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM-------GYKTLA------ 402 (707)
Q Consensus 340 ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-------~~~~~~------ 402 (707)
+-.+....+.++++.+.|+...+... ..-...++-+|...|.+..++++|.-+..+. .-.|..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44455555556666666555544211 1114567788888888888887776544332 222222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHh-HHHHHHHHHhccCCHHHHHHHHHH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGE----GLQPDDI-TFVGVLSACNHAGLLDIGRQYFNA 461 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 461 (707)
+.--|..++...|...+|.+.-++..+. |-+|-.. ....+.+.|-..|+.+.|+.-|+.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 2223444556666666666666554432 2222111 223344444555555555544443
No 246
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.04 E-value=0.61 Score=45.24 Aligned_cols=148 Identities=15% Similarity=0.129 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH----HHHHHHHcCCHHH
Q 043060 415 GKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC----MVDLLGRAGLFDE 490 (707)
Q Consensus 415 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----li~~~~~~g~~~~ 490 (707)
|+..+|-..++++++. .+.|-..+.-.-.+|...|+.+.-...++++.. ...+|...|.. +.-++..+|-+++
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 4444444444444442 233333444444445555555444444444443 22233322221 1222334455555
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC----CchhHHHHHHHhhhcCChhhHHHHHHHH
Q 043060 491 AEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPE----NPGAYVLLSNMYAGAGRWDDVATIRTRL 564 (707)
Q Consensus 491 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m 564 (707)
|++.-++. .++| |...-.++.......|+..++.+...+--..-.. -...|-..+-.+...+.++.|.++|++-
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 55554443 3332 2333333444444445555554443332221110 1123333444444445555555555443
Q ss_pred h
Q 043060 565 N 565 (707)
Q Consensus 565 ~ 565 (707)
.
T Consensus 274 i 274 (491)
T KOG2610|consen 274 I 274 (491)
T ss_pred H
Confidence 3
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=1.3 Score=42.61 Aligned_cols=122 Identities=12% Similarity=0.067 Sum_probs=89.0
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCChh
Q 043060 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS---LLGACRVHGRLE 521 (707)
Q Consensus 445 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---ll~~~~~~g~~~ 521 (707)
.....|++.+|...|...... .+-+...--.|+.+|...|+.++|..++..++.+-...-|.. -+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 456788999999999988763 333456667789999999999999999999975543333333 233333333333
Q ss_pred HHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 522 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+.. .++.-+..+|+|...-..|+..|...|+.++|.+.+=.+.+++.
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 322 23445567899999999999999999999999998877776543
No 248
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.80 E-value=0.052 Score=33.53 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 043060 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 505 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 536 (707)
.+|..++..+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888875
No 249
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.74 E-value=0.69 Score=45.42 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=21.1
Q ss_pred HHhcCCHHHHHHHHHHHhhcC--CCCChhhHHhHHHHHhccCCchHH
Q 043060 309 YTHTSDYKEALMLFRQMLQSN--IEPNDVTFLSVLPACAYLGALDLG 353 (707)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a 353 (707)
+.+..+.++|+..+.+-...- ..---.++..+..+.+..|.++++
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~m 62 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEM 62 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH
Confidence 345566666766666554421 111122444444555555544443
No 250
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.73 E-value=0.29 Score=46.22 Aligned_cols=101 Identities=14% Similarity=0.159 Sum_probs=80.8
Q ss_pred HHHHHHhcCC--CCChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC----------
Q 043060 388 AAEQVFDGMG--YKTLASWNAMISGLAMH-----GKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG---------- 450 (707)
Q Consensus 388 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 450 (707)
..++.|..+. ++|-.+|-+++..+..+ +..+-....++.|.+.|+.-|..+|..|++.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 4456677776 67888898888888654 557777788899999999999999999999875532
Q ss_pred ------CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHH
Q 043060 451 ------LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489 (707)
Q Consensus 451 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 489 (707)
+-+-+..+++.|. .+|+.||.++-..|++++++.|..-
T Consensus 132 F~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HhhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccH
Confidence 2345788899995 4799999999999999999988753
No 251
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.72 E-value=0.078 Score=32.65 Aligned_cols=33 Identities=30% Similarity=0.349 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 043060 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537 (707)
Q Consensus 505 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 537 (707)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456677777888888888888888888887764
No 252
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.72 E-value=0.33 Score=40.94 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=27.9
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 043060 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTM----EMKPDAAIWTSLLGAC 514 (707)
Q Consensus 467 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~ 514 (707)
...|+.....+++.+|+..|++..|+++++.. +++-+..+|..|+.-+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34456666666666666666666666665553 4443456666666544
No 253
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.56 E-value=0.22 Score=44.55 Aligned_cols=90 Identities=14% Similarity=0.189 Sum_probs=73.9
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcC
Q 043060 480 DLLGRAGLFDEAEALLKTM-EMKP------DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552 (707)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~-~~~p------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 552 (707)
+-+.+.|++++|..-|... ..-| ..+.|..-..+..+.+.++.|+.-..++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 4466778888888777764 2112 24567777778899999999999999999999998888899999999999
Q ss_pred ChhhHHHHHHHHhhCCC
Q 043060 553 RWDDVATIRTRLNDKGM 569 (707)
Q Consensus 553 ~~~~a~~~~~~m~~~~~ 569 (707)
++++|++-++++.+..+
T Consensus 183 k~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDP 199 (271)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 99999999999988665
No 254
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.39 E-value=0.53 Score=45.65 Aligned_cols=116 Identities=10% Similarity=0.015 Sum_probs=94.7
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHH----HHHHHHHHhcCChh
Q 043060 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-E-MKPDAAIW----TSLLGACRVHGRLE 521 (707)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~----~~ll~~~~~~g~~~ 521 (707)
..|+..+|-..++++.+ ..+.|...+.--=+++.-.|+.+.-...++++ + ..||...| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 46778888888888887 55668788887888999999999999999887 3 36664332 33444567789999
Q ss_pred HHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 522 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
+|++..+++++++|.|.-+...++.++.-.|++.++.++..+-.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 99999999999999999999999999999999999999876643
No 255
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.37 E-value=2.3 Score=38.84 Aligned_cols=163 Identities=18% Similarity=0.169 Sum_probs=94.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 043060 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478 (707)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 478 (707)
-+..||-+.--+...|+++.|.+.|+...+ +.|... +...-.-++.-.|++.-|.+-|...-+.-...|-...|--
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY- 174 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY- 174 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHH-
Confidence 345778777778888888888888888877 455332 3322233445567888887766655442112222222222
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC-------chhHHHHHHHhhhc
Q 043060 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN-------PGAYVLLSNMYAGA 551 (707)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 551 (707)
.-.+.-++.+|..-+.+--..-|..-|...+-.+.-- ++. -+.+++++.+-..++ ..+|..|+.-|...
T Consensus 175 --l~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLg-kiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 175 --LNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLG-KIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred --HHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHh-hcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2234446777766443321123555565555444322 111 112333333322222 36899999999999
Q ss_pred CChhhHHHHHHHHhhCCC
Q 043060 552 GRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 552 g~~~~a~~~~~~m~~~~~ 569 (707)
|..++|..+|+.....++
T Consensus 251 G~~~~A~~LfKLaiannV 268 (297)
T COG4785 251 GDLDEATALFKLAVANNV 268 (297)
T ss_pred ccHHHHHHHHHHHHHHhH
Confidence 999999999999887655
No 256
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.29 E-value=6.3 Score=45.35 Aligned_cols=126 Identities=14% Similarity=0.118 Sum_probs=58.3
Q ss_pred CCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH----HhccCCHHHHHHHH
Q 043060 384 GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA----CNHAGLLDIGRQYF 459 (707)
Q Consensus 384 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a----~~~~g~~~~a~~~~ 459 (707)
|++++|+.-+.++. ...|.-.+.--.++|.+.+|+.++ +|+...+..+..+ +...+.+++|--.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45555655555543 223333333344555555555553 3444443333332 33444555555444
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHH
Q 043060 460 NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI--WTSLLGACRVHGRLELGESVAKHL 530 (707)
Q Consensus 460 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~ll~~~~~~g~~~~A~~~~~~~ 530 (707)
+..-+ ..--+.+|..+|++.+|+.+-.++....|... -..|..-+...++.-+|-++..+.
T Consensus 963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 963 ERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 43311 01123445555666666666555543333222 244555555666555555544443
No 257
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.29 E-value=3.2 Score=35.96 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=46.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCCh
Q 043060 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212 (707)
Q Consensus 133 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 212 (707)
...++..+...+.......+++.+++.+ ..+...++.++..|++.+ .++....++. ..+......+++.+.+.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 3445555555566666666666666665 355666777777777653 2333444442 12233333455555555555
Q ss_pred hHHHHHHHhC
Q 043060 213 DDARQLFDEM 222 (707)
Q Consensus 213 ~~A~~l~~~m 222 (707)
+++.-++.++
T Consensus 86 ~~~~~l~~k~ 95 (140)
T smart00299 86 EEAVELYKKD 95 (140)
T ss_pred HHHHHHHHhh
Confidence 5555555554
No 258
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.26 E-value=6.1 Score=38.98 Aligned_cols=20 Identities=5% Similarity=-0.208 Sum_probs=13.5
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 043060 512 GACRVHGRLELGESVAKHLL 531 (707)
Q Consensus 512 ~~~~~~g~~~~A~~~~~~~~ 531 (707)
..+.+.++++.|...|+-.+
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34556777888888777544
No 259
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.24 E-value=11 Score=41.79 Aligned_cols=75 Identities=13% Similarity=0.157 Sum_probs=49.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHc-cCCCCchhHHHHHHHhhhcCC
Q 043060 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE-LEPENPGAYVLLSNMYAGAGR 553 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~ 553 (707)
++..+....+++.+..+.+..+-. |+..|..++.-+.+.+.++.-.+...++++ +...+.-.-..+++++++.+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCc
Confidence 445566778888888888888644 788999999999998877777666666654 222222223445555555554
No 260
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.22 E-value=3.7 Score=42.63 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=10.8
Q ss_pred HHHHHHHHHccCCCCc
Q 043060 523 GESVAKHLLELEPENP 538 (707)
Q Consensus 523 A~~~~~~~~~~~p~~~ 538 (707)
|.++..++.+.+|.-|
T Consensus 365 aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 365 AVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHHHHHhCCCCc
Confidence 5567777777777543
No 261
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.20 E-value=0.49 Score=41.46 Aligned_cols=68 Identities=19% Similarity=0.329 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCCCChHH
Q 043060 405 NAMISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFNAMIQ----DYKISPKLQH 474 (707)
Q Consensus 405 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 474 (707)
..++..+...|++++|+.+.+++.. ..| |...+..++.++...|+..+|.+.|+.+.+ +.|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3344455556666666666666665 333 333566666666666666666666554422 3455555543
No 262
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.18 E-value=7.5 Score=39.71 Aligned_cols=446 Identities=13% Similarity=0.093 Sum_probs=223.6
Q ss_pred HHHHHHHHhCCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCCCCc---chHHHHHHHHHcCCCchHHHHHHHHHHHC
Q 043060 48 QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ---VIWNNIIRGHSLSSSPVVAIKFYVRMILS 124 (707)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 124 (707)
++-+.+... +.+..+|-.|+ .-|...|..++.++++++|..|-. .+|..-+++-...++++....+|.+-+..
T Consensus 30 rLRerIkdN--PtnI~S~fqLi--q~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLI--QYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHH--HHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 444555443 46888999999 999999999999999999988644 47988898888889999999999998876
Q ss_pred CCCCCcccHHHHHHHHhccCChH------HHHHHHHHHHH-hCCCCC-hhHHHHHHHHHHh---------CCChhHHHHH
Q 043060 125 GFVPNTYTFPFILKSCAKISAIS------EGKQIHAHVLK-LGLESD-PFVHTSLINMYAQ---------NGELESARLV 187 (707)
Q Consensus 125 g~~p~~~t~~~ll~~~~~~~~~~------~a~~~~~~~~~-~g~~~~-~~~~~~li~~~~~---------~g~~~~A~~~ 187 (707)
.+ +...|..-+.-..+.+..- .-.+.++..+. .+++|- ...|+..+..+-. ..++|..++.
T Consensus 106 ~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 SL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred hc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 43 4455555554433333211 12233444443 244443 2345555444321 2345555666
Q ss_pred HhcCCCC----------CeehHHHHHHHHHh-------CCChhHHHHHHHhCccccCCCCC----CHhhHHHHHHHHhcc
Q 043060 188 FNKSSLR----------DAVSYTALITGYAS-------RGYLDDARQLFDEMPIREENFVP----NESTVVTVLSACAHM 246 (707)
Q Consensus 188 f~~~~~~----------~~~~~~~li~~~~~-------~g~~~~A~~l~~~m~~~~~~~~p----~~~t~~~ll~~~~~~ 246 (707)
+.++... |-..|..=+.-... .--+..|.+.+++..-.-.|+.. +..|++-+-+. +..
T Consensus 184 Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~-s~S 262 (660)
T COG5107 184 YMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAART-SDS 262 (660)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccc-ccc
Confidence 6655432 11111111111110 01133455555544221123221 12222221110 000
Q ss_pred CCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043060 247 GSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK---RDVISWNVMIGGYTHTSDYKEALMLFR 323 (707)
Q Consensus 247 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 323 (707)
+ -....+.-.+.|+....... .+..--+|+.... -....|----.-+...++-+.|+....
T Consensus 263 ~----WlNwIkwE~en~l~L~~~~~------------~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~ 326 (660)
T COG5107 263 N----WLNWIKWEMENGLKLGGRPH------------EQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVE 326 (660)
T ss_pred h----hhhHhhHhhcCCcccCCCcH------------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 0 00011111111111100000 0000111111111 011223322333444555566665544
Q ss_pred HHhhcCCCCChhhHHhHHHHHhcc-CCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHh---------cCCHHHHHHHH
Q 043060 324 QMLQSNIEPNDVTFLSVLPACAYL-GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK---------CGNIKAAEQVF 393 (707)
Q Consensus 324 ~m~~~g~~p~~~t~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~---------~g~~~~A~~~~ 393 (707)
.-.+. .|. +...+.-|... .+-+.....|+...+ .|..-|.+ .|+++.-.+++
T Consensus 327 rg~~~--sps---L~~~lse~yel~nd~e~v~~~fdk~~q------------~L~r~ys~~~s~~~s~~D~N~e~~~Ell 389 (660)
T COG5107 327 RGIEM--SPS---LTMFLSEYYELVNDEEAVYGCFDKCTQ------------DLKRKYSMGESESASKVDNNFEYSKELL 389 (660)
T ss_pred hcccC--CCc---hheeHHHHHhhcccHHHHhhhHHHHHH------------HHHHHHhhhhhhhhccccCCccccHHHH
Confidence 43221 122 22222222222 222222222221111 01111100 12222222222
Q ss_pred hcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh
Q 043060 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG-LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL 472 (707)
Q Consensus 394 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 472 (707)
-+-..+=...|-..+..-.+..-.+.|..+|-+..+.| +.++...+++++.-+ ..|+...|..+|+.=...+ ||.
T Consensus 390 ~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f---~d~ 465 (660)
T COG5107 390 LKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKF---PDS 465 (660)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhC---CCc
Confidence 11112233466677777777777888888888888888 566666777777654 4577788888887655432 333
Q ss_pred HH-HHHHHHHHHHcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 043060 473 QH-YGCMVDLLGRAGLFDEAEALLKTM--EMKPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537 (707)
Q Consensus 473 ~~-~~~li~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 537 (707)
.. -.-.+..+.+-++-+.|..+|+.. .+..+ ..+|..++.--..-|++..+..+-+++.++-|..
T Consensus 466 ~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 466 TLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred hHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 33 334566677888888888888864 22233 5688888888888898888888888888887764
No 263
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.10 E-value=1.3 Score=46.68 Aligned_cols=158 Identities=15% Similarity=0.088 Sum_probs=100.3
Q ss_pred HHHHcCCCchHHHHHHH-HHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh
Q 043060 103 RGHSLSSSPVVAIKFYV-RMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGEL 181 (707)
Q Consensus 103 ~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 181 (707)
....-+++++++.++.+ .-.-..++ ..-.+.+++-+-+.|..+.|+++-..- ..-.....++|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCH
Confidence 34456788888777665 11111122 334677777788888888888765432 2335566789999
Q ss_pred hHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHH
Q 043060 182 ESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261 (707)
Q Consensus 182 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 261 (707)
+.|.++-++.. +...|..|.....+.|+++-|.+.|.+... |..++-.|...|+.+.-.++......
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999988876 667999999999999999999999999832 66777777778888777777777666
Q ss_pred cCCCchhHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043060 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293 (707)
Q Consensus 262 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 293 (707)
.|- +|....++.-.|+.++..+++.+
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 651 33333344445666555555433
No 264
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.06 E-value=0.24 Score=46.71 Aligned_cols=99 Identities=10% Similarity=0.017 Sum_probs=76.3
Q ss_pred HHHHHHhcCC--CCCcchHHHHHHHHHcC-----CCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccC----------
Q 043060 82 YALLVFETIR--EPNQVIWNNIIRGHSLS-----SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS---------- 144 (707)
Q Consensus 82 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---------- 144 (707)
...+.|...+ ++|-.+|-+++..+... +..+-....++.|.+.|+.-|..+|+.||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677776 57778888888777543 445556667788999999999999999998765422
Q ss_pred ------ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 043060 145 ------AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180 (707)
Q Consensus 145 ------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 180 (707)
+-+-+..++++|...|+.||..+-..|++++++.+-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 234578899999999999999999999999987764
No 265
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.00 E-value=22 Score=44.46 Aligned_cols=282 Identities=12% Similarity=0.093 Sum_probs=142.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHh-cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccC
Q 043060 270 VTNALIDMYSKCGDLVKARDLFES-IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348 (707)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 348 (707)
.+-.+...|+..+++|....+... ...++ ...-|.-....|++..|..-|+.+.+.+ ++...+++.++......+
T Consensus 1422 l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~ 1497 (2382)
T KOG0890|consen 1422 LYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQ 1497 (2382)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhccc
Confidence 334444466666666666555552 22222 2233444556677777777777776643 222556666666655666
Q ss_pred CchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHH--HHHHHHcC--CHHHHHHHH
Q 043060 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM--ISGLAMHG--KADKALSLF 424 (707)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l--i~~~~~~g--~~~~A~~~~ 424 (707)
.++...-..+.......+. ....++.=+.+--+.++++....... ..+...|.+. +..+.+.. +.-.-.++.
T Consensus 1498 ~l~t~i~~~dg~~~~~se~-~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i 1573 (2382)
T KOG0890|consen 1498 HLSTEILHLDGLIINRSEE-VDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLI 1573 (2382)
T ss_pred chhHHHhhhcchhhccCHH-HHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHH
Confidence 6555554433333322221 11222222333455666666655554 4455555544 22222221 111111233
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHH----------HhHHhcCCCCChH------HHHHHHHHHHHcCCH
Q 043060 425 SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFN----------AMIQDYKISPKLQ------HYGCMVDLLGRAGLF 488 (707)
Q Consensus 425 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~----------~~~~~~~~~p~~~------~~~~li~~~~~~g~~ 488 (707)
+.+++.-+.| +.+|+..|.+..+.++.- ......+..++.. .|..-+..-....+.
T Consensus 1574 ~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~ 1645 (2382)
T KOG0890|consen 1574 ENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRI 1645 (2382)
T ss_pred HHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHH
Confidence 3333211111 222333322222222211 1111113333221 222222111111122
Q ss_pred HHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHH
Q 043060 489 DEAEALLKTM----EMKPD-----AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559 (707)
Q Consensus 489 ~~A~~~~~~~----~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 559 (707)
.+-+--+++. ..+|+ ..+|......++..|.++.|....-++.+..+ +..+...+..+...|+...|..
T Consensus 1646 ~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~ 1723 (2382)
T KOG0890|consen 1646 KEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALS 1723 (2382)
T ss_pred HhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHH
Confidence 2222222221 12222 67999999999999999999999888888774 4789999999999999999999
Q ss_pred HHHHHhhCCC
Q 043060 560 IRTRLNDKGM 569 (707)
Q Consensus 560 ~~~~m~~~~~ 569 (707)
++++..+...
T Consensus 1724 ~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1724 VLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHhhc
Confidence 9999886543
No 266
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.97 E-value=5.2 Score=40.70 Aligned_cols=71 Identities=20% Similarity=0.132 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---C----hhhHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCCChhhHHhHHH
Q 043060 273 ALIDMYSKCGDLVKARDLFESIEKR---D----VISWNVMIGGYTH---TSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342 (707)
Q Consensus 273 ~li~~~~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 342 (707)
.|+-.|-...+++...++.+.+... + ...-....-++-+ .|+.++|++++..+......++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3344466666666666666666543 1 1111123334445 6777777777777555555566666655544
Q ss_pred H
Q 043060 343 A 343 (707)
Q Consensus 343 ~ 343 (707)
.
T Consensus 226 I 226 (374)
T PF13281_consen 226 I 226 (374)
T ss_pred H
Confidence 3
No 267
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.92 E-value=3.2 Score=44.38 Aligned_cols=158 Identities=13% Similarity=0.100 Sum_probs=99.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHh-----HHHHHHHHHh----ccCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 043060 407 MISGLAMHGKADKALSLFSRMIGEG-LQPDDI-----TFVGVLSACN----HAGLLDIGRQYFNAMIQDYKISPKLQHYG 476 (707)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~-----t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 476 (707)
++....=.||-+.+++++.+..+.+ +.-... +|..++..+. .....+.+.+++..+.+.| |+...|.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~lfl 270 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSALFL 270 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHHHH
Confidence 3344444566666666666554421 111111 1222222222 2557888899999887653 6655544
Q ss_pred H-HHHHHHHcCCHHHHHHHHHhCC-CC---C--CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHH-HHHHHh
Q 043060 477 C-MVDLLGRAGLFDEAEALLKTME-MK---P--DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV-LLSNMY 548 (707)
Q Consensus 477 ~-li~~~~~~g~~~~A~~~~~~~~-~~---p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-~l~~~~ 548 (707)
. -...+...|++++|++.|++.- .+ | ....+--+...+....++++|...+.++.+...-....|. ..+-++
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3 3456677899999999999752 11 1 2334445666778889999999999999987665555555 445557
Q ss_pred hhcCCh-------hhHHHHHHHHhhC
Q 043060 549 AGAGRW-------DDVATIRTRLNDK 567 (707)
Q Consensus 549 ~~~g~~-------~~a~~~~~~m~~~ 567 (707)
...|+. ++|.++++++...
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHHH
Confidence 778988 8888888877643
No 268
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.76 E-value=3.1 Score=36.00 Aligned_cols=26 Identities=19% Similarity=0.494 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043060 486 GLFDEAEALLKTMEMKPDAAIWTSLLGAC 514 (707)
Q Consensus 486 g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 514 (707)
++++.|.+++.+.. +...|..++..+
T Consensus 110 ~d~~~a~~~~~~~~---~~~lw~~~~~~~ 135 (140)
T smart00299 110 GNYEKAIEYFVKQN---NPELWAEVLKAL 135 (140)
T ss_pred cCHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 45555555555421 344555555444
No 269
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.46 E-value=15 Score=40.89 Aligned_cols=116 Identities=15% Similarity=0.115 Sum_probs=61.2
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCCHh--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 043060 414 HGKADKALSLFSRMIGE-GLQPDDI--TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490 (707)
Q Consensus 414 ~g~~~~A~~~~~~m~~~-g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 490 (707)
..+.+.|..++.+.... +..+... ....+.......+..+++...+...... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 34567788888776443 2333322 2233332223332255666666654321 1233344444555557888888
Q ss_pred HHHHHHhCCCC-CCHHHHH-HHHHHHHhcCChhHHHHHHHHHHc
Q 043060 491 AEALLKTMEMK-PDAAIWT-SLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 491 A~~~~~~~~~~-p~~~~~~-~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
+...+..|+.. -+..-|. =+..+....|+.++|...|+++..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888877321 1111222 244555667888888888887643
No 270
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.43 E-value=0.7 Score=38.28 Aligned_cols=53 Identities=25% Similarity=0.293 Sum_probs=28.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 043060 410 GLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
+++..|+.+.|++.|.+.+. +-| +...|+.-..++--+|+.++|+.-+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34555666666666666555 333 233555555555555555555555555544
No 271
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.42 E-value=13 Score=39.75 Aligned_cols=126 Identities=12% Similarity=0.107 Sum_probs=53.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHhcCCCCCee---hHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHh
Q 043060 168 HTSLINMYAQNGELESARLVFNKSSLRDAV---SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244 (707)
Q Consensus 168 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~ 244 (707)
++.||.---...+.+.++.+++.+...=+. -|-....-=.+.|..+.+.++|++-. .+++-+...|...+.-+.
T Consensus 48 wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv---~aip~SvdlW~~Y~~f~~ 124 (577)
T KOG1258|consen 48 WTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGV---QAIPLSVDLWLSYLAFLK 124 (577)
T ss_pred hHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHh
Confidence 444443333333334444444444422211 12333333334455555556665543 344444444444443332
Q ss_pred -ccCCchHHHHHHHHHHHc-CCC-chhHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 043060 245 -HMGSLELGNWVCSLIEGH-GLG-SNLHVTNALIDMYSKCGDLVKARDLFESIEK 296 (707)
Q Consensus 245 -~~g~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 296 (707)
..|+.+.....|+.++.. |.. .....|-.+|..-..++++.....+|+++.+
T Consensus 125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 334444455555544442 111 1223444444444455555555555555544
No 272
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.34 E-value=6.7 Score=37.21 Aligned_cols=50 Identities=18% Similarity=0.283 Sum_probs=30.7
Q ss_pred HhcCCHHHHHHHHHhcCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 043060 279 SKCGDLVKARDLFESIEKRDV------ISWNVMIGGYTHTSDYKEALMLFRQMLQS 328 (707)
Q Consensus 279 ~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 328 (707)
.+.|++++|.+.|+.+..+.+ .+--.++.++-+.+++++|+..+++....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 456677777777777664321 22334455666777777777777766654
No 273
>PRK15331 chaperone protein SicA; Provisional
Probab=93.28 E-value=1.9 Score=37.92 Aligned_cols=84 Identities=10% Similarity=0.033 Sum_probs=38.2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHH
Q 043060 411 LAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489 (707)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 489 (707)
+-+.|++++|..+|+-+.. ..|... -+..|..+|-..+++++|...|.....-.. -|+..+--...+|...|+.+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CCCCccchHHHHHHHhCCHH
Confidence 3445555555555555544 222222 233444444445555555555554432111 12212222445555555555
Q ss_pred HHHHHHHhC
Q 043060 490 EAEALLKTM 498 (707)
Q Consensus 490 ~A~~~~~~~ 498 (707)
+|..-|+..
T Consensus 123 ~A~~~f~~a 131 (165)
T PRK15331 123 KARQCFELV 131 (165)
T ss_pred HHHHHHHHH
Confidence 555555544
No 274
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.17 E-value=1.4 Score=46.48 Aligned_cols=134 Identities=15% Similarity=0.236 Sum_probs=85.0
Q ss_pred HHHHcCCHHHHHHHHHHHH-HCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCH
Q 043060 410 GLAMHGKADKALSLFSRMI-GEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488 (707)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 488 (707)
...-.|+++++.++.+.-. -..++ ..-...++.-+.+.|..+.|+++-..-.. -.++..+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCH
Confidence 3445677777766664111 10111 33466677777788888888876543322 34566788999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 489 DEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 489 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
+.|.++.++.. +...|..|......+|+++.|++.+++. .-+..|+-.|...|+.+.-.++-+...++|
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99988876654 7889999999999999999999988875 345667778888888877777777766665
Q ss_pred C
Q 043060 569 M 569 (707)
Q Consensus 569 ~ 569 (707)
-
T Consensus 404 ~ 404 (443)
T PF04053_consen 404 D 404 (443)
T ss_dssp -
T ss_pred C
Confidence 4
No 275
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.91 E-value=12 Score=38.50 Aligned_cols=149 Identities=11% Similarity=-0.023 Sum_probs=82.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHhHHHHHHHHHhccCCHHHHHHHHHHhHHh-cCCCCChHHH
Q 043060 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP---DDITFVGVLSACNHAGLLDIGRQYFNAMIQD-YKISPKLQHY 475 (707)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~~ 475 (707)
...+|..++..+.+.|.++.|...+.++...+..+ +......-+...-..|+-++|...++..... .....+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 44578888888889999999998888887743222 2233444455566778888888888777652 1111011111
Q ss_pred HHHHHHHHHcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhc------CChhHHHHHHHHHHccCCCCchhHHHHHHHh
Q 043060 476 GCMVDLLGRAGLFDEAEALL-KTMEMKPDAAIWTSLLGACRVH------GRLELGESVAKHLLELEPENPGAYVLLSNMY 548 (707)
Q Consensus 476 ~~li~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 548 (707)
..+...+.. ..+.....- .......-..++..+..-+... ++.+.+...|.++.++.|....+|..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111100000 000000000 0000000123444444444444 7889999999999999998888888877766
Q ss_pred hh
Q 043060 549 AG 550 (707)
Q Consensus 549 ~~ 550 (707)
.+
T Consensus 303 ~~ 304 (352)
T PF02259_consen 303 DK 304 (352)
T ss_pred HH
Confidence 53
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.47 E-value=0.2 Score=31.38 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=20.5
Q ss_pred hHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 540 AYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 540 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
+|..|+++|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788888999999999998888854
No 277
>PRK09687 putative lyase; Provisional
Probab=92.32 E-value=12 Score=36.79 Aligned_cols=74 Identities=11% Similarity=0.065 Sum_probs=42.7
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 447 (707)
+..+...-+.++++.|+.+-.-.+.+.+..++ ..-..+.++...|+. +|+..+.++.+ -.||..+-...+.+|.
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~--~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLY--KFDDNEIITKAIDKLK 278 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHh--hCCChhHHHHHHHHHh
Confidence 45555666666666666433333333333333 233566777777775 68888888776 3456665555555543
No 278
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.04 E-value=0.29 Score=47.41 Aligned_cols=109 Identities=14% Similarity=0.079 Sum_probs=76.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 043060 442 VLSACNHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHG 518 (707)
Q Consensus 442 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 518 (707)
-.+-|.++|.+++|+..|...+ ...| +..++..-..+|.+..++..|+.-.... .+.. -...|.--+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3567889999999999998765 3445 7788888888999999988877655543 2211 1445666666666778
Q ss_pred ChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhH
Q 043060 519 RLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557 (707)
Q Consensus 519 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 557 (707)
+..+|.+-++.+++++|++.. |-..|.+.....++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE----LKKSLARINSLRER 214 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhh
Confidence 999999999999999998644 33334444444444
No 279
>PRK09687 putative lyase; Provisional
Probab=92.03 E-value=13 Score=36.54 Aligned_cols=180 Identities=8% Similarity=-0.050 Sum_probs=74.2
Q ss_pred chhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH----HHHHHHHHHHhhcCCCCChhhHHhHH
Q 043060 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY----KEALMLFRQMLQSNIEPNDVTFLSVL 341 (707)
Q Consensus 266 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll 341 (707)
+|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. ++++..+..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 34445555555555555433333333323344544444555555555542 3556666555332 23444433444
Q ss_pred HHHhccCCchH--HHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcC-CHH
Q 043060 342 PACAYLGALDL--GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHG-KAD 418 (707)
Q Consensus 342 ~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~ 418 (707)
.++...+.... .......+...-... +..+....+.++++.|+.+....+..-+..+|...-...+.++.+.+ +..
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~D~-~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~ 191 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAFDK-STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP 191 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhhCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH
Confidence 44443322110 011112121111111 44444555555555555333333333333344433333334444332 133
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCC
Q 043060 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451 (707)
Q Consensus 419 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 451 (707)
.+...+..+.. .+|..+-...+.++.+.|+
T Consensus 192 ~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 192 DIREAFVAMLQ---DKNEEIRIEAIIGLALRKD 221 (280)
T ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHccCC
Confidence 44444444442 3344444444444444444
No 280
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.80 E-value=9.3 Score=40.90 Aligned_cols=79 Identities=11% Similarity=0.035 Sum_probs=42.3
Q ss_pred CchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCC-------ChHHHHHHHHHHHHcCCHHHHH
Q 043060 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-------TLASWNAMISGLAMHGKADKAL 421 (707)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~ 421 (707)
..+.+.+++..+.+.-+. +....-.-...+...|++++|.+.|++.... ....+--+.-.+.-..++++|.
T Consensus 248 ~~~~a~~lL~~~~~~yP~--s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPN--SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 345555555555555443 2222233345556667777777777654321 1122333344455566777777
Q ss_pred HHHHHHHH
Q 043060 422 SLFSRMIG 429 (707)
Q Consensus 422 ~~~~~m~~ 429 (707)
+.|.++.+
T Consensus 326 ~~f~~L~~ 333 (468)
T PF10300_consen 326 EYFLRLLK 333 (468)
T ss_pred HHHHHHHh
Confidence 77777766
No 281
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.80 E-value=30 Score=40.17 Aligned_cols=84 Identities=13% Similarity=0.096 Sum_probs=46.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCChhh--HHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhc
Q 043060 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVT--FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383 (707)
Q Consensus 306 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 383 (707)
+.+|...|+|.+|+.+-.++... -|... -..+..-+...++.-+|-++...... + ..-.+..|++.
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s------d---~~~av~ll~ka 1039 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLS------D---PEEAVALLCKA 1039 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc------C---HHHHHHHHhhH
Confidence 34456678888888887776431 12221 13344445555555555444443222 1 23345667777
Q ss_pred CCHHHHHHHHhcCCCCCh
Q 043060 384 GNIKAAEQVFDGMGYKTL 401 (707)
Q Consensus 384 g~~~~A~~~~~~~~~~~~ 401 (707)
..+++|.++-......|.
T Consensus 1040 ~~~~eAlrva~~~~~~d~ 1057 (1265)
T KOG1920|consen 1040 KEWEEALRVASKAKRDDI 1057 (1265)
T ss_pred hHHHHHHHHHHhcccchH
Confidence 778888877766554443
No 282
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.74 E-value=0.3 Score=29.99 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 043060 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 505 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 536 (707)
.+|..+...+...|++++|...++++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35667777788888888888888888887774
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.51 E-value=0.31 Score=30.53 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 043060 506 IWTSLLGACRVHGRLELGESVAKHLLEL 533 (707)
Q Consensus 506 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 533 (707)
+|..|...|...|++++|++++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678888888888888888888886644
No 284
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.89 E-value=16 Score=35.26 Aligned_cols=59 Identities=15% Similarity=0.057 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 508 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
+.....|...|.+.+|.++.++++.++|-+...+-.|.+.|+..|+--.+.+-++++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34456788999999999999999999999999999999999999999999988888754
No 285
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.85 E-value=0.78 Score=30.28 Aligned_cols=33 Identities=33% Similarity=0.596 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI 437 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 437 (707)
+|..+...|.+.|++++|+++|++.++ ..|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 466677777777777777777777777 556654
No 286
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.99 E-value=0.063 Score=46.95 Aligned_cols=85 Identities=15% Similarity=0.212 Sum_probs=59.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhH
Q 043060 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214 (707)
Q Consensus 135 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 214 (707)
.++..+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35666667777888888888888776666788888899999988888888888874432 333456666666777777
Q ss_pred HHHHHHhC
Q 043060 215 ARQLFDEM 222 (707)
Q Consensus 215 A~~l~~~m 222 (707)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77777666
No 287
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.98 E-value=1.2 Score=38.78 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=26.5
Q ss_pred hcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
..++.+.++.++.-+.-+.|..+..-..-+..+...|+|.+|.++++.+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3445555555555555555555555555555555555555555555554443
No 288
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.66 E-value=2.5 Score=40.83 Aligned_cols=102 Identities=22% Similarity=0.285 Sum_probs=74.8
Q ss_pred HhCCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCC-------CCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCC
Q 043060 55 KTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE-------PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV 127 (707)
Q Consensus 55 ~~~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 127 (707)
..|...+..+...++ ..-....+++++...+-.+.+ |+...+ +.++-+. .-++++++.++..=++.|+-
T Consensus 57 ~~g~~~s~~~Vd~~V--~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLV--DVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred hcCCCcceeehhhhh--hccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccc
Confidence 345566667777777 666677889999888777653 222211 2233332 23778899998888889999
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 043060 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLG 160 (707)
Q Consensus 128 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 160 (707)
||.++++.++..+.+.+++.+|.++...|+...
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888877654
No 289
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.64 E-value=11 Score=37.49 Aligned_cols=136 Identities=15% Similarity=0.249 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHhHHHHHhc--cC----CchHHHHHHHHHHHhCCCC--CcHHHHhHHhhHHHhcCCH
Q 043060 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAY--LG----ALDLGKWIHAYIDKNHQKL--NNVSLWTSLIDMYAKCGNI 386 (707)
Q Consensus 315 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~y~~~g~~ 386 (707)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|.+..+.. ++...+.+|+.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556778888888888887777654433322 11 2345666666666654432 122222222211 11111
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh--HHHHHHHHHhccCC--HHHHHHHHHHh
Q 043060 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI--TFVGVLSACNHAGL--LDIGRQYFNAM 462 (707)
Q Consensus 387 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~~~ 462 (707)
+. -.+.+...|+.+.+.|+..+.. ....++..+..... +.++.++++.+
T Consensus 156 e~---------------------------l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 156 EE---------------------------LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred HH---------------------------HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 11 1345667777777777665544 33333333322222 44677777777
Q ss_pred HHhcCCCCChHHHHHHHH
Q 043060 463 IQDYKISPKLQHYGCMVD 480 (707)
Q Consensus 463 ~~~~~~~p~~~~~~~li~ 480 (707)
.+. ++++...+|..+.-
T Consensus 209 ~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 209 KKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHc-CCccccccccHHHH
Confidence 665 77777777665543
No 290
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.49 E-value=0.93 Score=27.72 Aligned_cols=32 Identities=22% Similarity=0.437 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 043060 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435 (707)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 435 (707)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3577777888888888888888888877 5554
No 291
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.20 E-value=1.6 Score=42.22 Aligned_cols=63 Identities=25% Similarity=0.283 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 504 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
..++..++..+...|+.+.+...++++++.+|-+...|..++.+|.+.|+...|+..++.+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345566777777888888888888888888888888888888888888888888888888765
No 292
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.19 E-value=3.6 Score=40.74 Aligned_cols=144 Identities=11% Similarity=0.134 Sum_probs=80.2
Q ss_pred CCCCcchHHHHHhhccC-----hHHHHHHHHHHHHhCCCCchhhhhhhchhhcccCC----CChHHHHHHHhcCCC----
Q 043060 26 KLLQNQPSLALLSKCTN-----MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF----GDLSYALLVFETIRE---- 92 (707)
Q Consensus 26 ~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~----g~~~~A~~~f~~~~~---- 92 (707)
.......++.+|..-.. +.....+++.+.+.|+..+.+++-+..-+...... -....|..+|+.|.+
T Consensus 56 r~~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~f 135 (297)
T PF13170_consen 56 RGNHRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPF 135 (297)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcc
Confidence 33445666666666544 56667888899999998887776654411222111 235567777777763
Q ss_pred ---CCcchHHHHHHHHHcCCCc----hHHHHHHHHHHHCCCCCCcc--cHHHHHHHHhccCC--hHHHHHHHHHHHHhCC
Q 043060 93 ---PNQVIWNNIIRGHSLSSSP----VVAIKFYVRMILSGFVPNTY--TFPFILKSCAKISA--ISEGKQIHAHVLKLGL 161 (707)
Q Consensus 93 ---~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~ 161 (707)
++-..+.+|+.. ..+++ +.+..+|+.+...|+..+.. ..+.++..+....+ ...+..+++.+.+.|+
T Consensus 136 LTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~ 213 (297)
T PF13170_consen 136 LTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGV 213 (297)
T ss_pred ccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCC
Confidence 344455555544 33333 34555666666666555332 33333333322222 3356666777777776
Q ss_pred CCChhHHHHH
Q 043060 162 ESDPFVHTSL 171 (707)
Q Consensus 162 ~~~~~~~~~l 171 (707)
+.....|..+
T Consensus 214 kik~~~yp~l 223 (297)
T PF13170_consen 214 KIKYMHYPTL 223 (297)
T ss_pred ccccccccHH
Confidence 6655555443
No 293
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.09 E-value=1.5 Score=39.89 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=31.1
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHH
Q 043060 499 EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564 (707)
Q Consensus 499 ~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 564 (707)
.+.|+ +.++|-|.--+...|+++.|.+.|+-.++++|...-+...-+-.+.-.||+.-|.+-+..-
T Consensus 93 ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 93 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAF 159 (297)
T ss_pred hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHH
Confidence 34444 4444444444445555555555555555555544444444444444445555444444333
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.06 E-value=15 Score=32.24 Aligned_cols=86 Identities=21% Similarity=0.120 Sum_probs=50.6
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHH
Q 043060 447 NHAGLLDIGRQYFNAMIQDYKISPKL-QHYGCMVDLLGRAGLFDEAEALLKTME-MKPDAAIWTSLLGACRVHGRLELGE 524 (707)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~ 524 (707)
...++.+++..++..+. -+.|.. ..-..-...+.+.|++.+|..+|+++. -.|....-.+|+..|....+-..=.
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 45556666666666664 333432 222223445677888888888888873 2344555566666666655444455
Q ss_pred HHHHHHHccCC
Q 043060 525 SVAKHLLELEP 535 (707)
Q Consensus 525 ~~~~~~~~~~p 535 (707)
...+++++.++
T Consensus 98 ~~A~evle~~~ 108 (160)
T PF09613_consen 98 RYADEVLESGA 108 (160)
T ss_pred HHHHHHHhcCC
Confidence 55666666665
No 295
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.01 E-value=2 Score=36.86 Aligned_cols=54 Identities=15% Similarity=0.103 Sum_probs=40.8
Q ss_pred hcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
..++.++++.+++.+.-+.|+.+..-..-+..+...|+|+||.++++.+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 367777777777777777777777777777777788888888888877776654
No 296
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.77 E-value=13 Score=31.21 Aligned_cols=59 Identities=12% Similarity=0.168 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 043060 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 405 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
...+..+..+|+-+.-.+++.++.. .-+|++.....+..||.+.|+..++.+++.++-+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3345556666666666666666654 2356666666677777777777777777666654
No 297
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.73 E-value=78 Score=40.08 Aligned_cols=158 Identities=13% Similarity=0.072 Sum_probs=90.7
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhCCChhHHHHHHhc-CCCCCeehHHHHHHHHHhCCChh
Q 043060 137 LKSCAKISAISEGKQIHAHVLKLGL--ESDPFVHTSLINMYAQNGELESARLVFNK-SSLRDAVSYTALITGYASRGYLD 213 (707)
Q Consensus 137 l~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~ 213 (707)
..+--+.+.+.+|...++.-..... ......+-.+...|+.-+++|....+... ...+ +...-|-.....|++.
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccHH
Confidence 3344566777777777776311100 11123344455588888888877766653 2222 2334455566789999
Q ss_pred HHHHHHHhCccccCCCCCC-HhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHH-HHHHHHHhcCCHHHHHHHH
Q 043060 214 DARQLFDEMPIREENFVPN-ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN-ALIDMYSKCGDLVKARDLF 291 (707)
Q Consensus 214 ~A~~l~~~m~~~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~ 291 (707)
.|...|+.+ .+..|+ ..+++-++......|.++...-..+-.... ..+....++ .=+.+--+.++++..+...
T Consensus 1467 da~~Cye~~----~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1467 DAAACYERL----IQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHh----hcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 999999998 445555 557777777666667766655543333322 223333333 2334446677777666665
Q ss_pred HhcCCCChhhHHHH
Q 043060 292 ESIEKRDVISWNVM 305 (707)
Q Consensus 292 ~~~~~~~~~~~~~l 305 (707)
. .++...|.+.
T Consensus 1542 ~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVE 1552 (2382)
T ss_pred h---cccccchhHH
Confidence 5 5566666655
No 298
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.58 E-value=46 Score=37.23 Aligned_cols=174 Identities=13% Similarity=0.047 Sum_probs=98.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhh----HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhcc
Q 043060 272 NALIDMYSKCGDLVKARDLFESIEKRDVIS----WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347 (707)
Q Consensus 272 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 347 (707)
..-+++..+...++.|..+-+.-..+ ... .....+-+.+.|++++|...|-+-... +.|. .++.-+...
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 34556666666677776665543322 111 222334456788888888888776542 3332 234444444
Q ss_pred CCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 043060 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA-SWNAMISGLAMHGKADKALSLFSR 426 (707)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~ 426 (707)
.....-..+++.+.+.|.. +...-+.|+.+|.+.++.+.-.++.+........ -....+..+.+.+-.++|..+-.+
T Consensus 411 q~IknLt~YLe~L~~~gla--~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA--NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHcccc--cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 4455555666777777777 6667788999999999999888888776521111 123344445555555555544443
Q ss_pred HHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 043060 427 MIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462 (707)
Q Consensus 427 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 462 (707)
... ....... .+...+++++|.++++.+
T Consensus 489 ~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 489 FKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred hcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 322 1222222 233456666666666654
No 299
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.37 E-value=6.6 Score=35.57 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh------HH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI--TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL------QH 474 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~------~~ 474 (707)
.+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+.....++........|. ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 34455555666666666666666666554444443 34455555556666666665555543321111111 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC
Q 043060 475 YGCMVDLLGRAGLFDEAEALLKTM 498 (707)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~ 498 (707)
|..|. +...+++.+|-+.|-..
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHcc
Confidence 22222 23467777777777665
No 300
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.33 E-value=24 Score=33.61 Aligned_cols=229 Identities=16% Similarity=0.222 Sum_probs=130.4
Q ss_pred CHHHHHHHHHhcCC----C---ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc---CC--CCChhhHHhHHHHHhccCCc
Q 043060 283 DLVKARDLFESIEK----R---DVISWNVMIGGYTHTSDYKEALMLFRQMLQS---NI--EPNDVTFLSVLPACAYLGAL 350 (707)
Q Consensus 283 ~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~t~~~ll~~~~~~~~~ 350 (707)
+.++|+.-|+++.+ + ...+.-.+|..+.+.|++++.++.|.+|+.- .+ .-...+.++++...+...+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 45555555555432 1 2234445677777777777777777776531 11 12334566666666655555
Q ss_pred hHHHHHHHHHHHh----C-CCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC--------CC-------hHHHHHHHHH
Q 043060 351 DLGKWIHAYIDKN----H-QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY--------KT-------LASWNAMISG 410 (707)
Q Consensus 351 ~~a~~~~~~~~~~----~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~~ 410 (707)
+.-...++.-... . ... -..+-+-|...|...|.+.+-.+++.++.. .| ...|..=|..
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRL-WFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERL-WFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred HHHHHHHHHHHHHHHhhhccee-eeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 5555555433221 1 111 122345677788888888877777776521 11 2367777888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh-----ccCCHHHHHHHHHHhHHhcCCCCCh-----HHHHHHHH
Q 043060 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN-----HAGLLDIGRQYFNAMIQDYKISPKL-----QHYGCMVD 480 (707)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~ 480 (707)
|..+.+-.+-..+|++.+.-.-.........++.-|. +.|.+++|-.-|-++.+.|.-..++ .-|-.|.+
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLAN 280 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLAN 280 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHH
Confidence 8888888888888888765322222334456666664 5688888876555555544433222 23556667
Q ss_pred HHHHcCCHHHHHHHHHh--C-CCC--CCHHHHHHHHHHHHhc
Q 043060 481 LLGRAGLFDEAEALLKT--M-EMK--PDAAIWTSLLGACRVH 517 (707)
Q Consensus 481 ~~~~~g~~~~A~~~~~~--~-~~~--p~~~~~~~ll~~~~~~ 517 (707)
++.+.|-- -|+. . |.+ |.......|+.+|-..
T Consensus 281 MLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 281 MLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhcc
Confidence 77776621 1111 1 233 4566777888888654
No 301
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.03 E-value=5.1 Score=35.70 Aligned_cols=65 Identities=14% Similarity=0.220 Sum_probs=41.8
Q ss_pred CCCCC-HHHHHHHHHHHHhcC-----------ChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 499 EMKPD-AAIWTSLLGACRVHG-----------RLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 499 ~~~p~-~~~~~~ll~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
.++|+ ..++..+..++..++ .+++|...|+++.+.+|.| ..|..-+.+. ++|-+++.++.+
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~ 135 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHK 135 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHH
Confidence 45676 456666666665543 2677788888888899977 5666555554 368888888888
Q ss_pred CCCc
Q 043060 567 KGMK 570 (707)
Q Consensus 567 ~~~~ 570 (707)
++..
T Consensus 136 ~~~~ 139 (186)
T PF06552_consen 136 QGLG 139 (186)
T ss_dssp SSS-
T ss_pred HHhh
Confidence 7763
No 302
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.88 E-value=3.4 Score=28.54 Aligned_cols=51 Identities=14% Similarity=0.239 Sum_probs=37.1
Q ss_pred hHHHHHHHhhhcCChhhHHHHHHHHhhCCCccCCcccEEeECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCC
Q 043060 540 AYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGF 616 (707)
Q Consensus 540 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 616 (707)
....++-++.+.|++++|.++.+.+.+. .|...++......+.+.|.+.|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 4567888999999999999999998863 34455555555667777777763
No 303
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.86 E-value=22 Score=36.42 Aligned_cols=67 Identities=18% Similarity=0.294 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCC----CCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEP----ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 503 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
...+|..++..+++.|+++.|...+.++...++ ..+.....-+..+...|+.++|...++...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 377899999999999999999999999988652 2567788889999999999999999988887443
No 304
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.80 E-value=51 Score=36.80 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=17.1
Q ss_pred chhHHHHHHH-----hhhcCChhhHHHHHHHH
Q 043060 538 PGAYVLLSNM-----YAGAGRWDDVATIRTRL 564 (707)
Q Consensus 538 ~~~~~~l~~~-----~~~~g~~~~a~~~~~~m 564 (707)
..++..|.++ +...|+|++|.+.++++
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 3445544443 57789999998777664
No 305
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.27 E-value=23 Score=32.19 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHCCCCCCHhHHH--HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH-----HHHHHHHcCCHHHH
Q 043060 419 KALSLFSRMIGEGLQPDDITFV--GVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC-----MVDLLGRAGLFDEA 491 (707)
Q Consensus 419 ~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A 491 (707)
+.....+++....-+....++. .+...+...+++++|..-++..... |....+.. |.......|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 5555555665532121122222 2344567788888888887765432 33344443 34567788999999
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 043060 492 EALLKTMEMKPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 492 ~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 536 (707)
++.++... .++ ......-.+.+...|+-++|+..|+++++.++.
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 99888753 122 222334456788899999999999999888753
No 306
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.94 E-value=21 Score=31.78 Aligned_cols=133 Identities=12% Similarity=0.132 Sum_probs=77.4
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhC-CChhHHHHHHhcCC
Q 043060 115 IKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF-VHTSLINMYAQN-GELESARLVFNKSS 192 (707)
Q Consensus 115 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~-g~~~~A~~~f~~~~ 192 (707)
++..+.+.+.+++|+...+..++..+.+.|.+..-. +++..++-+|.. +-..|++.-.+. .-..-|..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 345556667788888888888999988888765444 344445444443 333333322111 11233444444443
Q ss_pred CCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHH
Q 043060 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261 (707)
Q Consensus 193 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 261 (707)
..+..++..+...|++-+|+++.+... + -+......++.+..+.+|...-..++.....
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~----~--~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYH----K--VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcC----C--cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356677888889999999999988752 1 1222234455665566665555555554444
No 307
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.85 E-value=3.9 Score=39.65 Aligned_cols=76 Identities=14% Similarity=0.196 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCChhhHHh
Q 043060 268 LHVTNALIDMYSKCGDLVKARDLFESIEKR---DVISWNVMIGGYTHTSDYKEALMLFRQMLQ-----SNIEPNDVTFLS 339 (707)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 339 (707)
..++..++..+..+|+.+.+...++++... |...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456788999999999999999999988754 667899999999999999999999998865 578887666544
Q ss_pred HHHH
Q 043060 340 VLPA 343 (707)
Q Consensus 340 ll~~ 343 (707)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4333
No 308
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.68 E-value=1.1 Score=27.66 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=18.6
Q ss_pred HHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHH
Q 043060 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390 (707)
Q Consensus 359 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 390 (707)
..++..+. +..+|+.|...|...|++++|+
T Consensus 4 kAie~~P~--n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELNPN--NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHCCC--CHHHHHHHHHHHHHCcCHHhhc
Confidence 34444444 6666777777777777776664
No 309
>PRK10941 hypothetical protein; Provisional
Probab=86.39 E-value=5 Score=39.00 Aligned_cols=64 Identities=17% Similarity=0.152 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 506 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
..+.|-.++.+.++++.|.++.+.++.+.|+++.-+.-.+-+|.+.|.+..|..=++.-.++-.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 4566777889999999999999999999999999899999999999999999998888776543
No 310
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.12 E-value=1.8 Score=26.23 Aligned_cols=31 Identities=19% Similarity=0.495 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 435 (707)
.|..+...|...|++++|++.|++..+ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 456667777777888888888877776 4554
No 311
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.03 E-value=2.9 Score=40.87 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=63.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc
Q 043060 407 MISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485 (707)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 485 (707)
-.+-|.++|.+++|+..|.+.+. +.| |.+++..-..+|.+...+..|..-.+.++.- -..-...|+.-+.+-...
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHH
Confidence 35679999999999999999888 777 8899999999999999998888777766541 001112233323333334
Q ss_pred CCHHHHHHHHHhC-CCCCC
Q 043060 486 GLFDEAEALLKTM-EMKPD 503 (707)
Q Consensus 486 g~~~~A~~~~~~~-~~~p~ 503 (707)
|...||.+-++.. .++|+
T Consensus 179 g~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPK 197 (536)
T ss_pred hhHHHHHHhHHHHHhhCcc
Confidence 5566666655553 56676
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.71 E-value=1.7 Score=27.98 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHc
Q 043060 506 IWTSLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 506 ~~~~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 444555555555555555555555543
No 313
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.63 E-value=1 Score=25.73 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=18.2
Q ss_pred hhHHHHHHHhhhcCChhhHHHHHH
Q 043060 539 GAYVLLSNMYAGAGRWDDVATIRT 562 (707)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~a~~~~~ 562 (707)
.+...|+.++...|++++|.++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456677888888888888887764
No 314
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.18 E-value=10 Score=34.37 Aligned_cols=95 Identities=13% Similarity=0.049 Sum_probs=67.3
Q ss_pred HHHHhHHhhHHHhcCCHHHHHHHHhcCCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHH---
Q 043060 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT------LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFV--- 440 (707)
Q Consensus 370 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--- 440 (707)
...+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+....--.+......
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3467789999999999999999999986552 2367778888889999999988888776532222222211
Q ss_pred HHHH--HHhccCCHHHHHHHHHHhHH
Q 043060 441 GVLS--ACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 441 ~ll~--a~~~~g~~~~a~~~~~~~~~ 464 (707)
.+.. ++...+++.+|-+.|-....
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCc
Confidence 1222 23457899999888877654
No 315
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.02 E-value=34 Score=32.07 Aligned_cols=62 Identities=10% Similarity=0.048 Sum_probs=35.4
Q ss_pred HHHHHHHHc-CCHHHHHHHHHhC-----CCCCCHHHHHHHH---HHHHhcCChhHHHHHHHHHHccCCCCc
Q 043060 477 CMVDLLGRA-GLFDEAEALLKTM-----EMKPDAAIWTSLL---GACRVHGRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 477 ~li~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~ll---~~~~~~g~~~~A~~~~~~~~~~~p~~~ 538 (707)
.+.+.|... .++++|+..++.. +-+.+...-..++ .--...+++.+|+.+|+++....-+|+
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 445555544 5667777777665 1112222222333 233556888999999998877554443
No 316
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.74 E-value=23 Score=33.32 Aligned_cols=57 Identities=9% Similarity=-0.094 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcc------CCCCchhHHHHHHHhhhcCChhhHHHHHHH
Q 043060 507 WTSLLGACRVHGRLELGESVAKHLLEL------EPENPGAYVLLSNMYAGAGRWDDVATIRTR 563 (707)
Q Consensus 507 ~~~ll~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 563 (707)
+......+.+...+++|-..+.+-... -|.--..|+..+-+|....++..|.+.++.
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 333444555555555555544443221 122223466666666667777777666544
No 317
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.43 E-value=2 Score=25.81 Aligned_cols=25 Identities=12% Similarity=0.082 Sum_probs=12.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCC
Q 043060 511 LGACRVHGRLELGESVAKHLLELEP 535 (707)
Q Consensus 511 l~~~~~~g~~~~A~~~~~~~~~~~p 535 (707)
..++.+.|+.++|.+.++++++..|
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3344444555555555555554444
No 318
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=84.18 E-value=11 Score=31.81 Aligned_cols=63 Identities=14% Similarity=0.044 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhc---CChhHHHHHHHHHHc-cCCC-CchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 504 AAIWTSLLGACRVH---GRLELGESVAKHLLE-LEPE-NPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 504 ~~~~~~ll~~~~~~---g~~~~A~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
..+--.+..++.+. .+..+++.+++.+++ -.|. .....+.|+-++.+.|+++.++++.+...+
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 33333444444443 345566667777665 2232 233445566667777777777777766655
No 319
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.52 E-value=0.17 Score=44.14 Aligned_cols=84 Identities=13% Similarity=0.185 Sum_probs=41.0
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 043060 101 IIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180 (707)
Q Consensus 101 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 180 (707)
+|..+.+.+.+.....+++.+...+...+....+.++..|++.+..+....+++ ..+.+-...++..+-+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcch
Confidence 345555555666666666666654433445555566666666655455544443 1111222344444555555
Q ss_pred hhHHHHHHhcC
Q 043060 181 LESARLVFNKS 191 (707)
Q Consensus 181 ~~~A~~~f~~~ 191 (707)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555544443
No 320
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=83.23 E-value=2.3 Score=29.43 Aligned_cols=32 Identities=31% Similarity=0.325 Sum_probs=25.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHccCCCCchh
Q 043060 509 SLLGACRVHGRLELGESVAKHLLELEPENPGA 540 (707)
Q Consensus 509 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 540 (707)
.+.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45667899999999999999999999998643
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.22 E-value=1.9 Score=27.70 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=24.5
Q ss_pred hhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 539 GAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4788999999999999999999999875
No 322
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.03 E-value=15 Score=33.25 Aligned_cols=61 Identities=16% Similarity=0.113 Sum_probs=41.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 043060 478 MVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 538 (707)
-..++.+.+.++.|++-..+. .+.|. .....--..+|.+...++.|++-|+++++.+|...
T Consensus 140 raaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 140 RAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred hHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 344566677777777665553 45554 33333345577788889999999999999999754
No 323
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.38 E-value=2.5 Score=24.59 Aligned_cols=29 Identities=24% Similarity=0.205 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 043060 507 WTSLLGACRVHGRLELGESVAKHLLELEP 535 (707)
Q Consensus 507 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 535 (707)
|..+...+...|+++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44444555555555555555555555444
No 324
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.36 E-value=1.4 Score=26.49 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=25.8
Q ss_pred hHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 540 AYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 540 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
++..++.+|.+.|++++|.+.++++.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 56789999999999999999999998754
No 325
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.21 E-value=14 Score=31.89 Aligned_cols=85 Identities=18% Similarity=0.085 Sum_probs=46.3
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHH
Q 043060 446 CNHAGLLDIGRQYFNAMIQDYKISPKL-QHYGCMVDLLGRAGLFDEAEALLKTMEMKP-DAAIWTSLLGACRVHGRLELG 523 (707)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A 523 (707)
-...++.+++..++..|. -+.|+. ..-..-+-.+.+.|++++|..+|++..-.+ ....-..|+..|.....-..=
T Consensus 20 aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEW 96 (153)
T ss_pred HHhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHH
Confidence 345778888888888775 344433 222223445677888888888888874333 333334455555443322223
Q ss_pred HHHHHHHHcc
Q 043060 524 ESVAKHLLEL 533 (707)
Q Consensus 524 ~~~~~~~~~~ 533 (707)
.....++++.
T Consensus 97 r~~A~~~le~ 106 (153)
T TIGR02561 97 HVHADEVLAR 106 (153)
T ss_pred HHHHHHHHHh
Confidence 3334444443
No 326
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=81.94 E-value=24 Score=38.63 Aligned_cols=183 Identities=16% Similarity=0.257 Sum_probs=104.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChh----------hHHhHHHHHhccCCchHHHHHHHHHHH-hCCCCCc
Q 043060 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV----------TFLSVLPACAYLGALDLGKWIHAYIDK-NHQKLNN 369 (707)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~ 369 (707)
+-..++-.|....+++..+++.+.+... ||.. .|.-.++---+-|+-+.|..+.--+++ .|...|
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap- 278 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP- 278 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC-
Confidence 3445666777788888888888887653 3322 222223222344666666665554444 344332
Q ss_pred HHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhH---HHHHHHHH
Q 043060 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT---FVGVLSAC 446 (707)
Q Consensus 370 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a~ 446 (707)
++||-||++ ++.|- +-+.|...+..+.|.+.|++..+ +.|+..+ +..|+.+-
T Consensus 279 --------Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 279 --------DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred --------ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Confidence 456667653 22221 11234445566788899999888 7887653 33444332
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 043060 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526 (707)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 526 (707)
.+ .++.-.++ +. .--.|-.+++|.|.++.-.+.|+- . ..+.+-.-.+|+.+|.++
T Consensus 334 G~--~Fens~El-q~------------IgmkLn~LlgrKG~leklq~YWdV-------~---~y~~asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 334 GE--HFENSLEL-QQ------------IGMKLNSLLGRKGALEKLQEYWDV-------A---TYFEASVLANDYQKAIQA 388 (1226)
T ss_pred hh--hccchHHH-HH------------HHHHHHHHhhccchHHHHHHHHhH-------H---HhhhhhhhccCHHHHHHH
Confidence 21 11111111 00 111244567888888887777653 2 234455567788889999
Q ss_pred HHHHHccCCCC
Q 043060 527 AKHLLELEPEN 537 (707)
Q Consensus 527 ~~~~~~~~p~~ 537 (707)
.+.|.++.|+.
T Consensus 389 ae~mfKLk~P~ 399 (1226)
T KOG4279|consen 389 AEMMFKLKPPV 399 (1226)
T ss_pred HHHHhccCCce
Confidence 99999888764
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.82 E-value=2.7 Score=25.56 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=25.5
Q ss_pred hhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 539 GAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
.+|..++.+|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4788999999999999999999998875
No 328
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.87 E-value=26 Score=27.81 Aligned_cols=85 Identities=15% Similarity=0.116 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 043060 250 ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329 (707)
Q Consensus 250 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 329 (707)
++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+.-||...|-++-.. +.|..+++..-+..|...|
T Consensus 22 qEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 22 QEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 4455555544444311 222222233456788999999999999988999999877654 6777777777777777766
Q ss_pred CCCChhhHH
Q 043060 330 IEPNDVTFL 338 (707)
Q Consensus 330 ~~p~~~t~~ 338 (707)
.|...+|.
T Consensus 99 -~p~lq~Fa 106 (115)
T TIGR02508 99 -DPRLQTFV 106 (115)
T ss_pred -CHHHHHHH
Confidence 45444443
No 329
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=80.42 E-value=1e+02 Score=34.40 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=34.9
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccC
Q 043060 94 NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS 144 (707)
Q Consensus 94 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 144 (707)
+...| ++|--+.|.|++++|.++..+... +.......|...+..+....
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTT
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCC
Confidence 44456 567788999999999999965553 34566678888888887653
No 330
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.39 E-value=17 Score=37.47 Aligned_cols=120 Identities=20% Similarity=0.225 Sum_probs=62.1
Q ss_pred HcCCHHHHH-HHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHH
Q 043060 413 MHGKADKAL-SLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491 (707)
Q Consensus 413 ~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 491 (707)
..|+.-.|- +++.-+....-.|+.+-+.+.+ ..+.|+++.+.+.+....+ -+.....+..+++....+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 345544443 3444444443445544433333 4556667766666665543 3334445556666666666666666
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 043060 492 EALLKTM-EMK-PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 492 ~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 536 (707)
..+-+.| +.+ -++.+...-.......|-++++.-.+++++.+.|+
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 6666555 111 12333333333344455566666666666666654
No 331
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.98 E-value=5.7 Score=35.44 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCC
Q 043060 520 LELGESVAKHLLELEPENPGAYVLLSNMYAGAGR 553 (707)
Q Consensus 520 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 553 (707)
+++|+.-+++++.++|+...++..++++|...+.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 5678888889999999999999999999987664
No 332
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.85 E-value=1e+02 Score=33.97 Aligned_cols=79 Identities=13% Similarity=-0.004 Sum_probs=44.3
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHHccCCCCchhHHHHHHHhhhc-C--ChhhHHH
Q 043060 487 LFDEAEALLKTMEMKPDAAIWTSLLGACRVH----GRLELGESVAKHLLELEPENPGAYVLLSNMYAGA-G--RWDDVAT 559 (707)
Q Consensus 487 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~a~~ 559 (707)
+.+.+..++.+...+-+......|.+.|..- .+.+.|...+.++.+.. +.....|+.++... | .+..|.+
T Consensus 454 ~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~ 530 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKR 530 (552)
T ss_pred chhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHH
Confidence 3444555555543333444444444444332 35677777777666655 56666777776442 1 2577777
Q ss_pred HHHHHhhCC
Q 043060 560 IRTRLNDKG 568 (707)
Q Consensus 560 ~~~~m~~~~ 568 (707)
++++..+.+
T Consensus 531 ~~~~~~~~~ 539 (552)
T KOG1550|consen 531 YYDQASEED 539 (552)
T ss_pred HHHHHHhcC
Confidence 777766543
No 333
>PRK12798 chemotaxis protein; Reviewed
Probab=79.77 E-value=79 Score=32.62 Aligned_cols=181 Identities=17% Similarity=0.252 Sum_probs=119.5
Q ss_pred cCCHHHHHHHHhcCCCC----ChHHHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCHh----HHHHHHHHHhccCCHH
Q 043060 383 CGNIKAAEQVFDGMGYK----TLASWNAMISGL-AMHGKADKALSLFSRMIGEGLQPDDI----TFVGVLSACNHAGLLD 453 (707)
Q Consensus 383 ~g~~~~A~~~~~~~~~~----~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~ 453 (707)
.|+.++|.+.+..+... .+..+-.|+.+- ....+..+|+++|++..- .-|... ....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 68899999999888543 445677777664 456789999999999876 566543 3444455678899999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHH-HHHHHHHHcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043060 454 IGRQYFNAMIQDYKISPKLQHYG-CMVDLLGRAG---LFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKH 529 (707)
Q Consensus 454 ~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 529 (707)
++..+-..-.+.|...|-...|. .++..+.+.+ ..+.-..++..|.-.-...+|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98888777777777777554433 3334444433 3444445555553222267899999999999999999999999
Q ss_pred HHccCCCCchhHHHHHHHhh-----hcCChhhHHHHHHHHhh
Q 043060 530 LLELEPENPGAYVLLSNMYA-----GAGRWDDVATIRTRLND 566 (707)
Q Consensus 530 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~m~~ 566 (707)
++.+... ...-...+..|. -..+.+++.+.+..+..
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 9987632 222223333332 23446666665555433
No 334
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.71 E-value=44 Score=29.72 Aligned_cols=121 Identities=17% Similarity=0.206 Sum_probs=77.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChH-HHHHH--HHHHHHcC
Q 043060 411 LAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQ-HYGCM--VDLLGRAG 486 (707)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--i~~~~~~g 486 (707)
+++.+..++|+.-|..+.+.|...-.+ ............|+-..|...|+++-.+. ..|-.. -..-| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-SIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-CCcchhhHHHHHHHHHHHhccc
Confidence 456677888888888888766543222 22233445567888888888888886542 222221 11111 12356678
Q ss_pred CHHHHHHHHHhCCCC--CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 043060 487 LFDEAEALLKTMEMK--PD-AAIWTSLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 487 ~~~~A~~~~~~~~~~--p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
.+++.....+.+... |= ...-.+|.-+-.+.|++..|...|+++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 888888777776322 22 44556777788889999999999988876
No 335
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=79.47 E-value=3.4 Score=42.57 Aligned_cols=86 Identities=19% Similarity=0.156 Sum_probs=66.2
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHH
Q 043060 481 LLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVA 558 (707)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 558 (707)
-+...+.++.|..++.++ ..+|+ +..|..-..++.+.+++..|..=+.++++.+|.....|+.-+.++.+.+++.+|.
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 344566777788777775 66776 4444444577888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhh
Q 043060 559 TIRTRLND 566 (707)
Q Consensus 559 ~~~~~m~~ 566 (707)
..++....
T Consensus 93 ~~l~~~~~ 100 (476)
T KOG0376|consen 93 LDLEKVKK 100 (476)
T ss_pred HHHHHhhh
Confidence 88877654
No 336
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.84 E-value=17 Score=35.42 Aligned_cols=99 Identities=14% Similarity=0.173 Sum_probs=71.6
Q ss_pred CCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---------ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC
Q 043060 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR---------DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333 (707)
Q Consensus 263 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 333 (707)
|.+....+...++..-....++++++..+-.+... ..++|--+ +-.-++++++-++..=++.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhccccc
Confidence 44555556666677667777888888877766532 22233222 233467799999998889999999
Q ss_pred hhhHHhHHHHHhccCCchHHHHHHHHHHHhCC
Q 043060 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365 (707)
Q Consensus 334 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 365 (707)
.+|++.+++.+.+.+++..|.++.-.++....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 99999999999999998888887777666543
No 337
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.28 E-value=1.4 Score=43.15 Aligned_cols=85 Identities=16% Similarity=0.243 Sum_probs=44.4
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHH
Q 043060 485 AGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562 (707)
Q Consensus 485 ~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 562 (707)
.|.+++|++.|... ...|. ...+.--.+++.+.++...|++-+..+++++|+...-|-.-..+....|+|++|...+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 34455555555443 33333 33344444455555555555555555555555555555555555555555555555555
Q ss_pred HHhhCCC
Q 043060 563 RLNDKGM 569 (707)
Q Consensus 563 ~m~~~~~ 569 (707)
...+.++
T Consensus 207 ~a~kld~ 213 (377)
T KOG1308|consen 207 LACKLDY 213 (377)
T ss_pred HHHhccc
Confidence 5555554
No 338
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.99 E-value=17 Score=29.01 Aligned_cols=60 Identities=12% Similarity=0.232 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 043060 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480 (707)
Q Consensus 419 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 480 (707)
+..+-+..+....+-|+.....+.+.||-+.+++..|.++|+.++.+.+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 555666666667788999999999999999999999999999887754433 336665553
No 339
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.85 E-value=27 Score=37.31 Aligned_cols=163 Identities=15% Similarity=0.131 Sum_probs=90.4
Q ss_pred CeehHHHHHHH-----HHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhH
Q 043060 195 DAVSYTALITG-----YASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH 269 (707)
Q Consensus 195 ~~~~~~~li~~-----~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~ 269 (707)
++++|..++.. ..-.|+++.|-.++..+. ...-+.+...+.+.|-.++|.++ .+|..
T Consensus 580 nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~---------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d 641 (794)
T KOG0276|consen 580 NVISYKILLEVLEYQTLVLRRDLEVADGVLPTIP---------KEIRTKVAHFLESQGMKEQALEL---------STDPD 641 (794)
T ss_pred ceEeEeeehHHHHHHHHhhhccccccccccccCc---------hhhhhhHHhHhhhccchHhhhhc---------CCChh
Confidence 45555544432 334566666655444331 12234444555555655555443 22221
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCC
Q 043060 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA 349 (707)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 349 (707)
.. -+...+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|..... |.+++-.+...|+
T Consensus 642 ~r---Felal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~ 707 (794)
T KOG0276|consen 642 QR---FELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGN 707 (794)
T ss_pred hh---hhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCC
Confidence 11 23345677888887775543 4567788888888888888888888877654 3445555556666
Q ss_pred chHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcC
Q 043060 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396 (707)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 396 (707)
-+....+-....+.|.. |.-.-+|...|+++++.+++.+-
T Consensus 708 ~~~l~~la~~~~~~g~~-------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 708 AEGLAVLASLAKKQGKN-------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hhHHHHHHHHHHhhccc-------chHHHHHHHcCCHHHHHHHHHhc
Confidence 55544444444444443 22233455566666666666543
No 340
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=77.71 E-value=17 Score=28.59 Aligned_cols=62 Identities=13% Similarity=0.224 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 043060 416 KADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479 (707)
Q Consensus 416 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 479 (707)
|.-++.+-++.+....+-|+.....+.+.||-+.+++..|.++|+.++.+.+. +...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 34456666677777778899999999999999999999999999987654332 344565554
No 341
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.41 E-value=35 Score=31.02 Aligned_cols=89 Identities=12% Similarity=0.025 Sum_probs=59.2
Q ss_pred HHHhccCCchHHHHHHHHHHHcCCCch--hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhh--HHHHHHHHHhcCCHH
Q 043060 241 SACAHMGSLELGNWVCSLIEGHGLGSN--LHVTNALIDMYSKCGDLVKARDLFESIEKRDVIS--WNVMIGGYTHTSDYK 316 (707)
Q Consensus 241 ~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~ 316 (707)
..+...++++.|...+...+...-..+ ..+--.|.......|.+|+|+..++....++-.+ ...-.+.+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 344555666666666665554321111 1223346677788899999999998887765433 334457788999999
Q ss_pred HHHHHHHHHhhcC
Q 043060 317 EALMLFRQMLQSN 329 (707)
Q Consensus 317 ~A~~~~~~m~~~g 329 (707)
+|..-|.+.++.+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 9999999988865
No 342
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.75 E-value=55 Score=29.17 Aligned_cols=52 Identities=17% Similarity=0.184 Sum_probs=21.9
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 043060 413 MHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
.+|-+++.....+.+-..|-.-....--.|.-+-.+.|++..|.+.|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3444554444444443322222222223333344455555555555554443
No 343
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=76.74 E-value=7.7 Score=36.19 Aligned_cols=82 Identities=16% Similarity=0.164 Sum_probs=59.6
Q ss_pred cCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHH
Q 043060 485 AGLFDEAEALLKTM-EMKPDA-AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562 (707)
Q Consensus 485 ~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 562 (707)
..+++.|+.-+.+. .+.|.+ .-|..-+-.+.+..+++.+..-..+++++.|+.....+.|+........+++|+..+.
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 34555565555443 566774 5556666667778888888888888888888888888888888888888888888887
Q ss_pred HHhh
Q 043060 563 RLND 566 (707)
Q Consensus 563 ~m~~ 566 (707)
+..+
T Consensus 103 ra~s 106 (284)
T KOG4642|consen 103 RAYS 106 (284)
T ss_pred HHHH
Confidence 7743
No 344
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=76.46 E-value=82 Score=31.03 Aligned_cols=160 Identities=12% Similarity=0.015 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-CCCChHHHHH
Q 043060 403 SWNAMISGLAMHGKA---DKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYK-ISPKLQHYGC 477 (707)
Q Consensus 403 ~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~ 477 (707)
+...++.+|...+.. ++|..+++.+... .|+ ...+..-+..+.+.++.+++.+.+..|+.... ...+....-.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 566677777776654 4566666666553 344 33555556667778888888888888887533 1122222222
Q ss_pred HHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHH--HH---HHHHhcCC------hhHHHHHHHHHHc--cCCCCchh-
Q 043060 478 MVDLLGRAGLFDEAEALLKTM---EMKPDAAIWTS--LL---GACRVHGR------LELGESVAKHLLE--LEPENPGA- 540 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~--ll---~~~~~~g~------~~~A~~~~~~~~~--~~p~~~~~- 540 (707)
.+.-+..... ..|...+..+ .+.|....|.. ++ ......++ ++....+++.+.+ ..|-++.+
T Consensus 164 ~i~~l~~~~~-~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEKSP-ELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhhCc-HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 2222333333 3444444433 23333210211 11 11122222 3333333443222 12323222
Q ss_pred --HH----HHHHHhhhcCChhhHHHHHHHHh
Q 043060 541 --YV----LLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 541 --~~----~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
.. .-+..+.+.++|++|.+.++...
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22 22455788999999999987543
No 345
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.27 E-value=19 Score=33.88 Aligned_cols=91 Identities=14% Similarity=0.097 Sum_probs=67.5
Q ss_pred HHHHHHcCCHHHHHHHHHhC---------CCCCCHHHH-----------HHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 043060 479 VDLLGRAGLFDEAEALLKTM---------EMKPDAAIW-----------TSLLGACRVHGRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~---------~~~p~~~~~-----------~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 538 (707)
.+-+.+.|++.||..-+++. .-+|-..-| ..+-..+...|++-++++...+++..+|.|.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 34466677777776665543 234443333 3334455678999999999999999999999
Q ss_pred hhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 539 GAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.+|+.-+.+.+..=+.++|.+=|....+...
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 9999999999988888899988888876543
No 346
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=76.08 E-value=11 Score=35.23 Aligned_cols=66 Identities=18% Similarity=0.158 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhcCChh-------HHHHHHHHHHccC--CC----CchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 504 AAIWTSLLGACRVHGRLE-------LGESVAKHLLELE--PE----NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 504 ~~~~~~ll~~~~~~g~~~-------~A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
..++.-+.+.|+..|+.+ .|.+.|+++.+.+ |. .......++.++.+.|+.++|.+.|.++...+-
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 456666777788887744 4555555555433 22 235677899999999999999999999987543
No 347
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=76.07 E-value=1.4e+02 Score=33.46 Aligned_cols=49 Identities=16% Similarity=0.319 Sum_probs=29.2
Q ss_pred cCChhHHHHHHHHHHccC---CCCc-hhHH-----HHHHHhhhcCChhhHHHHHHHHh
Q 043060 517 HGRLELGESVAKHLLELE---PENP-GAYV-----LLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~---p~~~-~~~~-----~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
.|+..+..+.......+- |+.. ..|. .+.+.|...|+.++|.....+..
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 677777666555555432 2212 2332 44555777888888888777654
No 348
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=76.02 E-value=1.1e+02 Score=32.34 Aligned_cols=162 Identities=11% Similarity=0.132 Sum_probs=74.8
Q ss_pred HHHhHHhhHHHhcCCHHHHHHHHhcCC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 043060 371 SLWTSLIDMYAKCGNIKAAEQVFDGMG--YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448 (707)
Q Consensus 371 ~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 448 (707)
...-++++.++..-.+.-.+.+-.+|. ..+-..+-.++..|.++ ..++-..+|+++.+ ..-|.+.+..-+..+..
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa~~yE 143 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELADKYE 143 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHHHHHH
Confidence 334445555555544444444444442 22344555566666655 44555666666665 33344444444444444
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcC
Q 043060 449 AGLLDIGRQYFNAMIQDYKISPK------LQHYGCMVDLLGRAGLFDEAEALLKTM----EMKPDAAIWTSLLGACRVHG 518 (707)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g 518 (707)
.++.+.+..+|..+... +.|. .+.|.-|+..- ..+.+.-+.+..++ +...-.+.+.-+-.-|....
T Consensus 144 kik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 144 KIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 45666666666655432 2221 12333333211 12333333333332 11112333333334455556
Q ss_pred ChhHHHHHHHHHHccCCCCch
Q 043060 519 RLELGESVAKHLLELEPENPG 539 (707)
Q Consensus 519 ~~~~A~~~~~~~~~~~p~~~~ 539 (707)
++++|++++..+++.+..|..
T Consensus 220 N~~eai~Ilk~il~~d~k~~~ 240 (711)
T COG1747 220 NWTEAIRILKHILEHDEKDVW 240 (711)
T ss_pred CHHHHHHHHHHHhhhcchhhh
Confidence 666666666666665544433
No 349
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.99 E-value=15 Score=33.64 Aligned_cols=68 Identities=21% Similarity=0.212 Sum_probs=44.9
Q ss_pred HHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCC----CCchhHHHHHHHhhhcCChhhH
Q 043060 489 DEAEALLKTMEMKP---DAAIWTSLLGACRVHGRLELGESVAKHLLELEP----ENPGAYVLLSNMYAGAGRWDDV 557 (707)
Q Consensus 489 ~~A~~~~~~~~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a 557 (707)
++|.+.|-.+.-.| ++....+| ..|....|.++++.++-+++++.+ .|+..+..|+.+|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aL-AtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYAL-ATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHH-HHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 45666665553232 33333333 444456778888888888887642 3678888888888888888876
No 350
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.92 E-value=26 Score=37.47 Aligned_cols=162 Identities=17% Similarity=0.103 Sum_probs=92.9
Q ss_pred CcchHHHHHHH-----HHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHH
Q 043060 94 NQVIWNNIIRG-----HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVH 168 (707)
Q Consensus 94 ~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 168 (707)
++++|..++.. ..-.|+++.|-.++.... ...-+.+...+.++|..++|+++- ..||.
T Consensus 580 nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s-------~D~d~--- 642 (794)
T KOG0276|consen 580 NVISYKILLEVLEYQTLVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS-------TDPDQ--- 642 (794)
T ss_pred ceEeEeeehHHHHHHHHhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC-------CChhh---
Confidence 55555544432 233455555544333222 223344555555566555555432 12221
Q ss_pred HHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCC
Q 043060 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS 248 (707)
Q Consensus 169 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~ 248 (707)
-.....+.|+++.|.++..+.. +..-|..|..+..+.|++..|.+.|.... -|..|+-.+...|+
T Consensus 643 --rFelal~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----------d~~~LlLl~t~~g~ 707 (794)
T KOG0276|consen 643 --RFELALKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRAR-----------DLGSLLLLYTSSGN 707 (794)
T ss_pred --hhhhhhhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhc-----------chhhhhhhhhhcCC
Confidence 1233456788888877765543 56778888888888999988888888773 16677777777777
Q ss_pred chHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043060 249 LELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293 (707)
Q Consensus 249 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 293 (707)
-+....+-....+.|.. |.-..+|...|+++++.+++.+
T Consensus 708 ~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 708 AEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 66655555555555421 2222345556666666666544
No 351
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.92 E-value=57 Score=31.15 Aligned_cols=179 Identities=11% Similarity=0.128 Sum_probs=113.3
Q ss_pred cCCHHHHHHHHhcCC----CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCC--CCHhHHHHHHHHHhccC
Q 043060 383 CGNIKAAEQVFDGMG----YK---TLASWNAMISGLAMHGKADKALSLFSRMIGE---GLQ--PDDITFVGVLSACNHAG 450 (707)
Q Consensus 383 ~g~~~~A~~~~~~~~----~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~--p~~~t~~~ll~a~~~~g 450 (707)
...+++|+.-|++.. ++ ...+...||..+.+.|++++.++.|++|... .+. -+..+.++++.--+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 346777777777652 12 3345567888888899999999888888642 122 23346777777777666
Q ss_pred CHHHHHHHHHHhHHhc----CCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCC--C-----CCC-------HHHHHHHHH
Q 043060 451 LLDIGRQYFNAMIQDY----KISPKLQHYGCMVDLLGRAGLFDEAEALLKTME--M-----KPD-------AAIWTSLLG 512 (707)
Q Consensus 451 ~~~~a~~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-----~p~-------~~~~~~ll~ 512 (707)
+.+--.++++.-.... +-..-..+-+-|...|...|.+..-.++++++. . ..| ..+|..-+.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 6666655555433221 111222344567778888888888888887751 0 011 346667778
Q ss_pred HHHhcCChhHHHHHHHHHHccCC--CCchhHHH----HHHHhhhcCChhhHHHHH
Q 043060 513 ACRVHGRLELGESVAKHLLELEP--ENPGAYVL----LSNMYAGAGRWDDVATIR 561 (707)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~----l~~~~~~~g~~~~a~~~~ 561 (707)
.|..+++-..-..+|++++.... +.|...-. =+.+..+.|+|++|..-|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHH
Confidence 88888888888889999887542 23322222 235577889999987544
No 352
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.68 E-value=72 Score=30.01 Aligned_cols=55 Identities=13% Similarity=0.314 Sum_probs=29.7
Q ss_pred HHcCCHHHHHHHHHhC---CCCCCHHHHHH---HH--HHHHh-cCChhHHHHHHHHHHccCCCC
Q 043060 483 GRAGLFDEAEALLKTM---EMKPDAAIWTS---LL--GACRV-HGRLELGESVAKHLLELEPEN 537 (707)
Q Consensus 483 ~~~g~~~~A~~~~~~~---~~~p~~~~~~~---ll--~~~~~-~g~~~~A~~~~~~~~~~~p~~ 537 (707)
+..|++.+|+++|++. .+..+..-|.. ++ ..|.- ..|.-.+...+++-.+++|.-
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 3456667777777665 22222222321 11 11222 256666777888888888863
No 353
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=74.62 E-value=7.1 Score=30.66 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=34.6
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 524 ESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 524 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
...+++.++.+|+|...-..++..+...|++++|.+.+-.+.++..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 3456677778888888888999999999999999888888876543
No 354
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=73.67 E-value=6.7 Score=22.25 Aligned_cols=22 Identities=27% Similarity=0.194 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 043060 271 TNALIDMYSKCGDLVKARDLFE 292 (707)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~~~~ 292 (707)
...+...+...|+.++|+.+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445556666666666666654
No 355
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=73.63 E-value=2e+02 Score=34.08 Aligned_cols=255 Identities=9% Similarity=-0.069 Sum_probs=118.1
Q ss_pred HHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCC
Q 043060 289 DLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN 368 (707)
Q Consensus 289 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 368 (707)
.+.+.+.++|+..-...+..+.+.+. +++...+.++... +|...=...+.++...+........+..+... +
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~----~ 696 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS----P 696 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC----C
Confidence 44444455565555555555555554 3344444444432 22222223333333332111111122222221 1
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 448 (707)
+..+....++.+...+.- ....+...+..+|...-...+.++.+.+..+. +..+. -.++...-.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHH
Confidence 555555555555543311 12234445556666655566666665544322 12222 24455444555555555
Q ss_pred cCCHHH-HHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043060 449 AGLLDI-GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527 (707)
Q Consensus 449 ~g~~~~-a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 527 (707)
.+..+. +...+..+.++ ++...-...+..+.+.|..+.+...+..+-..+|..+-...+.++...+. +++...+
T Consensus 769 ~~~~~~~~~~~L~~ll~D----~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 769 LGAGGAPAGDAVRALTGD----PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred hccccchhHHHHHHHhcC----CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHH
Confidence 554332 23334444332 55666667777777777665543333333234555555566666666654 3344544
Q ss_pred HHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 528 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
..+++ +| +..+-..-+.++.+.+.-.++...+....+
T Consensus 844 ~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 844 VEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 44443 22 344555555555554323345555554443
No 356
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.12 E-value=1.5e+02 Score=32.61 Aligned_cols=51 Identities=29% Similarity=0.374 Sum_probs=30.8
Q ss_pred CChhHHHHHHHHHHccCCCCchhHHHHHHHhhhc-CChhhHHHHHHHHhhCCCc
Q 043060 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGA-GRWDDVATIRTRLNDKGMK 570 (707)
Q Consensus 518 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~ 570 (707)
.+.+.|...+.++-+.++ +.+...+...+.-. ++++.+.-.+..+.+.|..
T Consensus 378 r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYE 429 (552)
T ss_pred CCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhh
Confidence 366777777777777762 33344444433222 7777777777777766654
No 357
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=72.73 E-value=21 Score=28.19 Aligned_cols=60 Identities=13% Similarity=0.207 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHh
Q 043060 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377 (707)
Q Consensus 316 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 377 (707)
=++.+-++.+....+.|++....+.++||.+.+++..|..+++-+...... +...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 345566666777778888888888899999999988888888877643322 223455444
No 358
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=72.07 E-value=1.2e+02 Score=31.09 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=50.5
Q ss_pred CHHHHHHH---HHHHHhcCChhHHHHHHHHHHccCCC-CchhHHHHHHHhh-hcCChhhHHHHHHHHhh
Q 043060 503 DAAIWTSL---LGACRVHGRLELGESVAKHLLELEPE-NPGAYVLLSNMYA-GAGRWDDVATIRTRLND 566 (707)
Q Consensus 503 ~~~~~~~l---l~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 566 (707)
|...|.++ +..+.+.|-+..|.+..+-++.++|. ||......++.|+ ++++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 34444444 56778899999999999999999998 8888888888874 67888878888777654
No 359
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=71.18 E-value=24 Score=36.49 Aligned_cols=130 Identities=16% Similarity=0.147 Sum_probs=75.3
Q ss_pred HhcCCHHHHH-HHHhcCC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHH
Q 043060 381 AKCGNIKAAE-QVFDGMG--YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457 (707)
Q Consensus 381 ~~~g~~~~A~-~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 457 (707)
...|++..|- ++|.-+. +.++.........+...|+++.+...+...... +.....+...++....+.|++++|..
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 3456665554 3443332 123333233333456778888888887766543 44556677888888888889999888
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 043060 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGA 513 (707)
Q Consensus 458 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 513 (707)
.-..|..+ .+. +.+....-...--..|-++++.-.+++. .+.| ...-|-..++.
T Consensus 379 ~a~~~l~~-eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 379 TAEMMLSN-EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHHHhcc-ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 88877653 222 2332222222233457788888888875 3333 34445555443
No 360
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=71.04 E-value=1.5e+02 Score=31.51 Aligned_cols=159 Identities=12% Similarity=0.127 Sum_probs=104.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHh
Q 043060 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377 (707)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 377 (707)
|....-+++..+.++-.+.-...+-.+|...| -+...|..++..|... .-+.-..+++++++.... ++.....|+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn--Dvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN--DVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch--hHHHHHHHH
Confidence 33455567777888877777788888888754 4566777777777776 556677888888888877 777778888
Q ss_pred hHHHhcCCHHHHHHHHhcCCCC------Ch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHh
Q 043060 378 DMYAKCGNIKAAEQVFDGMGYK------TL---ASWNAMISGLAMHGKADKALSLFSRMIGE-GLQPDDITFVGVLSACN 447 (707)
Q Consensus 378 ~~y~~~g~~~~A~~~~~~~~~~------~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~ 447 (707)
+.|-+ ++.+.+...|.++..+ +. ..|.-++..- ..+.+..+.+..+.... |..--.+.+--+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 88877 8888888888765311 11 1455544321 23455566665555542 33333444555556677
Q ss_pred ccCCHHHHHHHHHHhHH
Q 043060 448 HAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 448 ~~g~~~~a~~~~~~~~~ 464 (707)
...++++|.+++..+.+
T Consensus 217 ~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 217 ENENWTEAIRILKHILE 233 (711)
T ss_pred cccCHHHHHHHHHHHhh
Confidence 77777788777776665
No 361
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.31 E-value=16 Score=33.75 Aligned_cols=64 Identities=19% Similarity=0.155 Sum_probs=51.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 043060 475 YGCMVDLLGRAGLFDEAEALLKT-MEMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~-~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 538 (707)
.+.-+..+.+.+.+++|+...+. ...+|. ...-..|+..++..|++++|..-++-+-++.|++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34456678889999999998776 456664 66777888999999999999999999999988754
No 362
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=69.98 E-value=44 Score=30.67 Aligned_cols=21 Identities=5% Similarity=0.184 Sum_probs=9.1
Q ss_pred ChHHHHHHHHHHHHcCCHHHH
Q 043060 471 KLQHYGCMVDLLGRAGLFDEA 491 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A 491 (707)
|+..+.+|+..|.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 344444444444444444443
No 363
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=68.82 E-value=27 Score=27.93 Aligned_cols=60 Identities=13% Similarity=0.206 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhh
Q 043060 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378 (707)
Q Consensus 317 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 378 (707)
+..+-+..+....+.|++......+.+|.+.+++..|..+++-+....... ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 455566667777788888888888999999999988888888877654432 225555543
No 364
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=68.29 E-value=1.7e+02 Score=31.06 Aligned_cols=96 Identities=14% Similarity=0.203 Sum_probs=46.5
Q ss_pred CCCHhHH-HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH---HHcCCHHHHHHHHHhC--CCCCCHHH
Q 043060 433 QPDDITF-VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL---GRAGLFDEAEALLKTM--EMKPDAAI 506 (707)
Q Consensus 433 ~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~~--~~~p~~~~ 506 (707)
.|+..|+ +.++.-+.+.|-+.+|+..+..+.. -.+|+...|..+|..= ..+| +..+.+.++.| .+-.|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHH
Confidence 4444443 2344444555555666666655543 3334555555555432 2222 44455555554 12245555
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 043060 507 WTSLLGACRVHGRLELGESVAKHLL 531 (707)
Q Consensus 507 ~~~ll~~~~~~g~~~~A~~~~~~~~ 531 (707)
|...+.--..+|..+.+-.++.++.
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHH
Confidence 5555555555555555555544444
No 365
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=67.83 E-value=82 Score=30.77 Aligned_cols=68 Identities=9% Similarity=0.156 Sum_probs=38.6
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C---CCCCHHHHHHHHHHHHhcCChhHHH
Q 043060 457 QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-E---MKPDAAIWTSLLGACRVHGRLELGE 524 (707)
Q Consensus 457 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p~~~~~~~ll~~~~~~g~~~~A~ 524 (707)
++.+.+...++-.++..+..+.++.++..+++.+-.++++.. + ..-|...|..++..-...||.....
T Consensus 187 EvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ 258 (292)
T PF13929_consen 187 EVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMR 258 (292)
T ss_pred HHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHH
Confidence 333344444455566666666667777777777766666654 1 1224556666666666666544333
No 366
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=67.28 E-value=1.3e+02 Score=29.45 Aligned_cols=112 Identities=13% Similarity=0.169 Sum_probs=70.8
Q ss_pred CchHHHHHHHHHHH-CCCCCCcccHHHHHHHHhc-cC-ChHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHhCCChhHHH
Q 043060 110 SPVVAIKFYVRMIL-SGFVPNTYTFPFILKSCAK-IS-AISEGKQIHAHVLKL-GLESDPFVHTSLINMYAQNGELESAR 185 (707)
Q Consensus 110 ~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~-~~-~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~ 185 (707)
...+|+.+|+.... ..+--|......+++.... .+ ....--++.+.+... |-.++..+....+..+++.+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666663222 2244466666666666554 11 222233344444432 34667777888888888888888888
Q ss_pred HHHhcCC-----CCCeehHHHHHHHHHhCCChhHHHHHHHh
Q 043060 186 LVFNKSS-----LRDAVSYTALITGYASRGYLDDARQLFDE 221 (707)
Q Consensus 186 ~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 221 (707)
++++... ..|...|...|....+.|+..-...+.++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 8887443 34788888888888888888777777664
No 367
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.15 E-value=9.3 Score=25.19 Aligned_cols=27 Identities=15% Similarity=0.325 Sum_probs=22.6
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 542 VLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 542 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
..|+.+|...|+.+.|+++++++.+.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 457889999999999999999888644
No 368
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=67.09 E-value=8.4 Score=22.07 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=25.4
Q ss_pred hhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 539 GAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
.++..++..|...|++++|...++...+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46888999999999999999999887654
No 369
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=66.90 E-value=67 Score=25.99 Aligned_cols=86 Identities=15% Similarity=0.100 Sum_probs=53.8
Q ss_pred CchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043060 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327 (707)
Q Consensus 248 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (707)
..++|..|.+.+...+- ....+.-.-+..+.+.|++++|...=.....||...|-++-. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45677777777777653 333344444556788999999955555555678888877654 478888888888888876
Q ss_pred cCCCCChhhH
Q 043060 328 SNIEPNDVTF 337 (707)
Q Consensus 328 ~g~~p~~~t~ 337 (707)
.| .|....|
T Consensus 98 ~g-~~~~q~F 106 (116)
T PF09477_consen 98 SG-SPELQAF 106 (116)
T ss_dssp -S-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 65 3443333
No 370
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=66.73 E-value=12 Score=22.09 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=22.4
Q ss_pred CChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 043060 518 GRLELGESVAKHLLELEPENPGAYVLLSNM 547 (707)
Q Consensus 518 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 547 (707)
|+.+.+..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467788888888888888777777766543
No 371
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=66.47 E-value=31 Score=34.10 Aligned_cols=91 Identities=15% Similarity=0.136 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-C---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 043060 474 HYGCMVDLLGRAGLFDEAEALLKTM-E---MKPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547 (707)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 547 (707)
+|.-=.+-|.+..++..|...|.+- . -.|| .+.|+.-..+-...|++..|+.-..+++.++|.+..+|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3444456688888999999988874 1 2344 67888888888889999999999999999999999999999999
Q ss_pred hhhcCChhhHHHHHHHH
Q 043060 548 YAGAGRWDDVATIRTRL 564 (707)
Q Consensus 548 ~~~~g~~~~a~~~~~~m 564 (707)
+....++++|....++.
T Consensus 163 ~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999977777655544
No 372
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=66.13 E-value=1.7e+02 Score=30.40 Aligned_cols=59 Identities=19% Similarity=0.310 Sum_probs=44.8
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 043060 373 WTSLIDMYAKCGNIKAAEQVFDGMGYK---TLASWNAMISGLAMHGKADKALSLFSRMIGEG 431 (707)
Q Consensus 373 ~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 431 (707)
...|+.-|.-.|++.+|...++++.-| ..+.+.+++.+.-+.|+-+.-+.++++.-..|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 345777888889999999988887654 55678888888888888777777777666554
No 373
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=66.03 E-value=99 Score=27.61 Aligned_cols=31 Identities=16% Similarity=0.317 Sum_probs=18.0
Q ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcCCHHH
Q 043060 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286 (707)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 286 (707)
...+.+.+++++..++..+++.+.+.|++..
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3344455666666666666666666665443
No 374
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=65.87 E-value=1.6e+02 Score=30.04 Aligned_cols=100 Identities=17% Similarity=0.160 Sum_probs=73.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH------------HHHHHHhcCChhHHHHHHHHHHccCCCC-------
Q 043060 477 CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS------------LLGACRVHGRLELGESVAKHLLELEPEN------- 537 (707)
Q Consensus 477 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~------------ll~~~~~~g~~~~A~~~~~~~~~~~p~~------- 537 (707)
.|...+-.+|+.++|..++.+.+++ ||.+ -+..|...+|+-.|.-+-+++....-++
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lK 211 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELK 211 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHH
Confidence 4667788999999999999987533 3333 2467788899999888877776532221
Q ss_pred chhHHHHHHHhhhcCChhhHHHHHHHHhhCCCccCCcccEEeE
Q 043060 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEV 580 (707)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~ 580 (707)
...|..+.....+.+.+=++-+.++.+-+.|..+...--|+.+
T Consensus 212 lkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~v 254 (439)
T KOG1498|consen 212 LKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEV 254 (439)
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhh
Confidence 1357788888999999999999999998887766543446554
No 375
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=65.78 E-value=68 Score=25.63 Aligned_cols=59 Identities=24% Similarity=0.330 Sum_probs=39.7
Q ss_pred hHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 043060 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439 (707)
Q Consensus 378 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 439 (707)
..+...|++++|..+.+....||+..|-++-. .+.|..+++..-+.+|..+| .|...+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34556788888888888888888888876643 35566666666676776664 3444444
No 376
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=63.35 E-value=2.1e+02 Score=30.40 Aligned_cols=239 Identities=9% Similarity=0.054 Sum_probs=126.6
Q ss_pred HHHHHHHhhcCCCCChhhHHhHHHHHhccC------CchHHHHHHHHHHHhC-CCCCcHHHHhHHhhHHHhcCCHHHHH-
Q 043060 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLG------ALDLGKWIHAYIDKNH-QKLNNVSLWTSLIDMYAKCGNIKAAE- 390 (707)
Q Consensus 319 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~------~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~- 390 (707)
..+|++..+. -|+...+...|..|...- .+.....+++...+.+ ........|..+.-++.+.....++.
T Consensus 302 ~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~ 379 (568)
T KOG2396|consen 302 CAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAV 379 (568)
T ss_pred HHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHH
Confidence 3455554432 234444444444443222 2223333444444432 22224556677776676665544433
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHc-CCHHH-HHHHHHHHHHCCCCCCHhHHHHHHHHHhccCC-HHHHH--HHHHHhHHh
Q 043060 391 QVFDGMGYKTLASWNAMISGLAMH-GKADK-ALSLFSRMIGEGLQPDDITFVGVLSACNHAGL-LDIGR--QYFNAMIQD 465 (707)
Q Consensus 391 ~~~~~~~~~~~~~~~~li~~~~~~-g~~~~-A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~--~~~~~~~~~ 465 (707)
.+-.+.-..+...|-.-+....+. .+++- -.++|......-..+-...+++.. .|+ .+... .++.....
T Consensus 380 ~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s- 453 (568)
T KOG2396|consen 380 KLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS- 453 (568)
T ss_pred HhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH-
Confidence 333344455666776655555432 22221 122233333321222222333222 122 21111 12222222
Q ss_pred cCCCCChHH-HHHHHHHHHHcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHh--cCChhHHHHHHHHHHccCCCCchh
Q 043060 466 YKISPKLQH-YGCMVDLLGRAGLFDEAEALLKTMEM-K-PDAAIWTSLLGACRV--HGRLELGESVAKHLLELEPENPGA 540 (707)
Q Consensus 466 ~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~ll~~~~~--~g~~~~A~~~~~~~~~~~p~~~~~ 540 (707)
-..|+..+ -+.+++-+.+.|-..+|...+.++.. . |+...+..++..-.. .-++.-+...|+.++...-.++..
T Consensus 454 -~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 454 -VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDL 532 (568)
T ss_pred -hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHH
Confidence 22344433 45678888899999999999999733 2 357777777764432 345777888999888754478888
Q ss_pred HHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 541 YVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 541 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
|......-...|+.+.+-.++-+..+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 88887777788888888777766553
No 377
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.91 E-value=2.6e+02 Score=31.42 Aligned_cols=170 Identities=14% Similarity=0.123 Sum_probs=97.7
Q ss_pred HHHHHcCCCchHHHHHHHHHHHCCCCCC---cccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 043060 102 IRGHSLSSSPVVAIKFYVRMILSGFVPN---TYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN 178 (707)
Q Consensus 102 i~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 178 (707)
|.-+.+.+.+++|+.+-+.-. |..|- .......+..+...|++++|-.+.-.|. ..+..-|---+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhccc
Confidence 556778888899988876544 33332 2335556666677788888777776665 23455555556666666
Q ss_pred CChhHHHHHHhcCCCC-CeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHH
Q 043060 179 GELESARLVFNKSSLR-DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS 257 (707)
Q Consensus 179 g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 257 (707)
+...+...++-.-+.+ +...|..++..+.. .+...-.++..+ .+++...-..++++ +..
T Consensus 437 ~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~-------Wp~~Lys~l~iisa------------~~~ 496 (846)
T KOG2066|consen 437 DQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKE-------WPGHLYSVLTIISA------------TEP 496 (846)
T ss_pred cccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHh-------CChhhhhhhHHHhh------------cch
Confidence 6655444443333332 56678888888877 333333333322 22232222222222 111
Q ss_pred HHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh
Q 043060 258 LIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV 299 (707)
Q Consensus 258 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 299 (707)
+..+. ..+..+...|+..|...+++++|...+-...+.++
T Consensus 497 q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 497 QIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 11111 12223344499999999999999999988776644
No 378
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=62.29 E-value=70 Score=25.09 Aligned_cols=61 Identities=20% Similarity=0.153 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC--CchhHHHHHHHhhhcCChh-hHHHHHHHH
Q 043060 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPE--NPGAYVLLSNMYAGAGRWD-DVATIRTRL 564 (707)
Q Consensus 504 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 564 (707)
....-.+...+...|+++.|.+.+-.+++.++. +..+-..|+.++.-.|.-+ -+.+++++|
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 566677777888888888888888888877653 4566677777777777644 444444444
No 379
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=62.27 E-value=14 Score=34.24 Aligned_cols=56 Identities=29% Similarity=0.471 Sum_probs=40.8
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 043060 482 LGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537 (707)
Q Consensus 482 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 537 (707)
....|+.+.|.+++.+. ...|+ ...|--+...-.+.|+++.|.+.+++.++++|++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 44567777777777765 55555 6677777777778888888888888888877754
No 380
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=61.84 E-value=1.3e+02 Score=32.40 Aligned_cols=128 Identities=19% Similarity=0.261 Sum_probs=66.2
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCCCC--ChH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 043060 373 WTSLIDMYAKCGNIKAAEQVFDGMGYK--TLA---SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447 (707)
Q Consensus 373 ~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 447 (707)
...|+.-|.+.+++++|..++..|.-. ... +.+.+.+.+.+..-.++....++.+...=..|....-......|.
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~ 490 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYR 490 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHH
Confidence 345777899999999999999988633 222 334444455555445555555555554322232221111111111
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 043060 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGE 524 (707)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 524 (707)
. -=.+-|+++ ..-+.|.+++++|..+--.++ +...+.-+-..-...|+.+.|.
T Consensus 491 d-~V~~~aRRf--------------------FhhLLR~~rfekAFlLAvdi~---~~DLFmdlh~~A~~~ge~~La~ 543 (545)
T PF11768_consen 491 D-PVSDLARRF--------------------FHHLLRYQRFEKAFLLAVDIG---DRDLFMDLHYLAKDKGELALAE 543 (545)
T ss_pred H-HHHHHHHHH--------------------HHHHHHhhHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhhhh
Confidence 1 001112222 333456778888888776665 3333433434444556655554
No 381
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=61.11 E-value=35 Score=29.44 Aligned_cols=66 Identities=18% Similarity=0.182 Sum_probs=47.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhh
Q 043060 488 FDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 488 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 556 (707)
-+.|.++.+-|+ ...............|++..|.++.+.++..+|+|..+-...+++|.+.|.-.+
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 456777777775 344445556667789999999999999999999999988888888877665433
No 382
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=60.95 E-value=33 Score=33.38 Aligned_cols=60 Identities=18% Similarity=0.299 Sum_probs=42.8
Q ss_pred HHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHH
Q 043060 483 GRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV 542 (707)
Q Consensus 483 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 542 (707)
.+.|+.++|..+|+.. ...|+ +.+..-+......++++-+|-+.|-+++.+.|.|..+..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 4678888888888764 55565 555555666666677788888888888888887766544
No 383
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=60.54 E-value=19 Score=23.73 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=15.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 043060 407 MISGLAMHGKADKALSLFSRMIGE 430 (707)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~m~~~ 430 (707)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666667777777777766653
No 384
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=60.52 E-value=3.5e+02 Score=32.06 Aligned_cols=255 Identities=9% Similarity=-0.068 Sum_probs=142.1
Q ss_pred HHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCC
Q 043060 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264 (707)
Q Consensus 185 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 264 (707)
..+.+.+..+|...-...+..+.+.+..+ +...+...+. .+|...-...+.++...+........+..+++.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~-----D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~-- 695 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALG-----DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS-- 695 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc-----CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC--
Confidence 35555556677777777777777777543 4444444431 123333334444444443211112233333332
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHH
Q 043060 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344 (707)
Q Consensus 265 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 344 (707)
+|..+....++.+...+.- ....+...+..+|...-...+.++.+.+..+. +..... .++...=.....++
T Consensus 696 -~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL 766 (897)
T PRK13800 696 -PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGL 766 (897)
T ss_pred -CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHH
Confidence 5666666666766654321 12345556667777666666777766654432 222222 34444444555566
Q ss_pred hccCCchH-HHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHH-HHHhcCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 043060 345 AYLGALDL-GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE-QVFDGMGYKTLASWNAMISGLAMHGKADKALS 422 (707)
Q Consensus 345 ~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 422 (707)
...+..+. +...+..+.+ +. +..+..+.+..+.+.|..+.+. .+...+..++...-...+.++...+. +++..
T Consensus 767 ~~~~~~~~~~~~~L~~ll~---D~-d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~ 841 (897)
T PRK13800 767 ATLGAGGAPAGDAVRALTG---DP-DPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVP 841 (897)
T ss_pred HHhccccchhHHHHHHHhc---CC-CHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHH
Confidence 66655432 2233333322 22 6778888888888888765553 34445556666666667777777765 46777
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 043060 423 LFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 423 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
.+..+.+ .|+...=...+.++.+...-..+...+..+.+
T Consensus 842 ~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 842 ALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 7777764 56666666677777775444566666666655
No 385
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.93 E-value=1.5e+02 Score=30.76 Aligned_cols=53 Identities=8% Similarity=0.111 Sum_probs=36.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHh--HHHHHHHHHh--ccCCHHHHHHHHHHhHH
Q 043060 411 LAMHGKADKALSLFSRMIGEGLQPDDI--TFVGVLSACN--HAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~ 464 (707)
+...+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34678899999999999886 555554 3344444443 46678888888887765
No 386
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=58.80 E-value=25 Score=26.54 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=8.5
Q ss_pred HHHHHHHHHHcCCHHHHHH
Q 043060 475 YGCMVDLLGRAGLFDEAEA 493 (707)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~ 493 (707)
..+|+.+|+..|++.++++
T Consensus 46 lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 387
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=58.76 E-value=2.2e+02 Score=29.26 Aligned_cols=90 Identities=8% Similarity=0.052 Sum_probs=51.1
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH-HcCCHHHHHHHHHhCCC---------CCCHHHHHHHHH
Q 043060 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLG-RAGLFDEAEALLKTMEM---------KPDAAIWTSLLG 512 (707)
Q Consensus 443 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~---------~p~~~~~~~ll~ 512 (707)
+..+.+.|-+..|.++.+-+..- ...-|+.....+|+.|+ ++++++--+++.+.... -|+ ..|+.-+.
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsL-dp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~aLA 187 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSL-DPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIALA 187 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhc-CCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHHHH
Confidence 44566777777777777766531 22224444445566665 66667666666665422 122 23333333
Q ss_pred HHHhcCCh---------------hHHHHHHHHHHccCC
Q 043060 513 ACRVHGRL---------------ELGESVAKHLLELEP 535 (707)
Q Consensus 513 ~~~~~g~~---------------~~A~~~~~~~~~~~p 535 (707)
+...++. +.|...+.+++...|
T Consensus 188 -~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 188 -YFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred -HHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 3333333 788888888888877
No 388
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=58.49 E-value=29 Score=26.21 Aligned_cols=47 Identities=9% Similarity=0.065 Sum_probs=33.9
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC-Hh-HHHHHHHHHhccCCHHHHHHHH
Q 043060 413 MHGKADKALSLFSRMIGEGLQPD-DI-TFVGVLSACNHAGLLDIGRQYF 459 (707)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~g~~p~-~~-t~~~ll~a~~~~g~~~~a~~~~ 459 (707)
...+.++|+..|+..++.-..|. .+ ++..++.+++..|++++.+.+-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888888877543333 22 6777888888888888877653
No 389
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.28 E-value=64 Score=25.01 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=28.7
Q ss_pred hcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHH
Q 043060 382 KCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKAL 421 (707)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 421 (707)
..|+.+.|.+++..++ +....|..++.++...|..+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4577778888888877 77777788888877777655543
No 390
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=58.14 E-value=51 Score=31.84 Aligned_cols=87 Identities=13% Similarity=0.063 Sum_probs=47.5
Q ss_pred HHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHh--
Q 043060 203 ITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK-- 280 (707)
Q Consensus 203 i~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-- 280 (707)
|.+++..+++.+++...-+--...+.++|...-..++ .|++.+....+.++-+...+.--..+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 5666777777776654433321224455544333333 355667776666666665554333333446666655543
Q ss_pred ---cCCHHHHHHHH
Q 043060 281 ---CGDLVKARDLF 291 (707)
Q Consensus 281 ---~g~~~~A~~~~ 291 (707)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 47777777665
No 391
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.05 E-value=3.5e+02 Score=31.37 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043060 301 SWNVMIGGYTHTSDYKEALMLFRQMLQ 327 (707)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (707)
-|..|+..|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 477889999999999999999998876
No 392
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.04 E-value=86 Score=25.61 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043060 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQ 327 (707)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (707)
.-|..++.-|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588999999999999999999999877
No 393
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=57.91 E-value=57 Score=30.28 Aligned_cols=57 Identities=18% Similarity=0.095 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHh
Q 043060 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAM 462 (707)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~ 462 (707)
.+.-++.+.+.+..++|+.+.++-++ -+|... +-..++..++-.|++++|..-++-.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 34456667777778888877777666 345443 4555667777777887777666544
No 394
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=56.65 E-value=38 Score=36.13 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=65.4
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHH
Q 043060 448 HAGLLDIGRQYFNAMIQDYKISPK--LQHYGCMVDLLGRAGLFDEAEALLKTM-EMK-PDAAIWTSLLGACRVHGRLELG 523 (707)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~A 523 (707)
..|+...|...+..+. ...|. ......|.+.+.+.|...+|-.++.+. .+. -.+.++.++..++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 3566677766665553 33332 223445666677777777777776653 222 2366777788888888888888
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHhh
Q 043060 524 ESVAKHLLELEPENPGAYVLLSNMYA 549 (707)
Q Consensus 524 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 549 (707)
++.++.+++++|+++..-..|..+-+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 88888888888888877666655433
No 395
>PRK10941 hypothetical protein; Provisional
Probab=56.57 E-value=78 Score=30.91 Aligned_cols=65 Identities=12% Similarity=0.000 Sum_probs=52.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhH
Q 043060 477 CMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541 (707)
Q Consensus 477 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 541 (707)
.+-.+|.+.++++.|++..+.+ .+.|+ +.-|.--+-.|.+.|.+..|..-++..++.-|+++.+-
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 4556788889999999888886 56666 66677777788999999999999999999888887543
No 396
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.24 E-value=1e+02 Score=25.15 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIG 429 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (707)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 578888889999999999999998877
No 397
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=54.86 E-value=1.5e+02 Score=28.11 Aligned_cols=116 Identities=7% Similarity=-0.091 Sum_probs=56.8
Q ss_pred HHhcCCHHHHHHHHhcCC--CCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhH-HHHHHHHHhccCCHHHH
Q 043060 380 YAKCGNIKAAEQVFDGMG--YKTL-ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT-FVGVLSACNHAGLLDIG 455 (707)
Q Consensus 380 y~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a 455 (707)
|....++..|...+.+.. .|++ .-|+.-+..+.+..+++.+..--++.++ +.||.+- ...+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 334455666666555442 3333 2345556666666666666666666666 5666653 22333344555566666
Q ss_pred HHHHHHhHH---hcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q 043060 456 RQYFNAMIQ---DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT 497 (707)
Q Consensus 456 ~~~~~~~~~---~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 497 (707)
+..+.+... ...+++.......|.++=...-...++.++.++
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 666555421 123333334444444433333333344444443
No 398
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=54.83 E-value=31 Score=27.30 Aligned_cols=53 Identities=8% Similarity=0.088 Sum_probs=36.6
Q ss_pred HHhcCChhHHHHHHHHHHccCCC----C-----chhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 514 CRVHGRLELGESVAKHLLELEPE----N-----PGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
..+.||+..|.+.+.+.+..... . ..+...++.++...|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34567777777776666653211 1 23455677888899999999999988765
No 399
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=54.55 E-value=39 Score=21.12 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCChhHHHHH--HHHHHccCC
Q 043060 507 WTSLLGACRVHGRLELGESV--AKHLLELEP 535 (707)
Q Consensus 507 ~~~ll~~~~~~g~~~~A~~~--~~~~~~~~p 535 (707)
|-.+...+-..|++++|+.+ ++-+..++|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 34455555566666666666 335544444
No 400
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.53 E-value=1.5e+02 Score=28.92 Aligned_cols=87 Identities=23% Similarity=0.187 Sum_probs=45.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC--CCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH-
Q 043060 408 ISGLAMHGKADKALSLFSRMIGE--GLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR- 484 (707)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~- 484 (707)
|.+++..+++.+++...-+--+. .++|.. .-.-|-.|++.+......++-..-.+..+. -+..-|.++++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~N-q~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSN-QSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCccc-CCchhhHHHHHHHHHH
Confidence 55666666666665544333221 123322 222233466667666666666555543221 222336666665543
Q ss_pred ----cCCHHHHHHHHHh
Q 043060 485 ----AGLFDEAEALLKT 497 (707)
Q Consensus 485 ----~g~~~~A~~~~~~ 497 (707)
.|.++||+++...
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 5778888777743
No 401
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=54.53 E-value=17 Score=33.78 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=51.6
Q ss_pred HHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 514 CRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
..+.++.+.+.+++.+++++-|+....|..++..-.++|+++.|.+.+++..+.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 45678999999999999999999999999999999999999999999999987665
No 402
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=53.96 E-value=56 Score=34.00 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=29.6
Q ss_pred hCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 043060 497 TMEMKPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537 (707)
Q Consensus 497 ~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 537 (707)
...++|. ..++.+-+..+.+++|+..|..+.++++++.|..
T Consensus 291 hc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 291 HCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp CS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 3355554 4567777888899999999999999999999864
No 403
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=53.92 E-value=2.1e+02 Score=28.47 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=36.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHccC-CCCc
Q 043060 478 MVDLLGRAGLFDEAEALLKTM-EMKPDA---AIWTSLLGACRVHGRLELGESVAKHLLELE-PENP 538 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~-~~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 538 (707)
|.-+-.+.|++.||.+.|+.+ ...|-. .+-..|+.+|....-+.....++-+.-++. |.+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA 346 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSA 346 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchH
Confidence 444445689999999999886 333422 233457777777666665555555554544 5443
No 404
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.88 E-value=45 Score=30.66 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 043060 499 EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEP 535 (707)
Q Consensus 499 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 535 (707)
...|++.++..++.++...|+.++|.+..+++..+.|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4568888888888888888888888888888888888
No 405
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=51.08 E-value=34 Score=33.29 Aligned_cols=52 Identities=19% Similarity=0.276 Sum_probs=44.7
Q ss_pred HHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 514 CRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
..+.|+.++|..+|+.++.+.|.++.+...++.......+.-+|..++-+..
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence 4678999999999999999999999999999888887778878877776543
No 406
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=50.75 E-value=2.8e+02 Score=28.00 Aligned_cols=77 Identities=14% Similarity=0.088 Sum_probs=56.5
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhh---cCChhhHHHHHHHH
Q 043060 490 EAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAG---AGRWDDVATIRTRL 564 (707)
Q Consensus 490 ~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m 564 (707)
.-+.+++++ ...|+ ...+..++..+.+..+.+...+.+++++..+|.++..|..+++.... .-.+++...+|.+.
T Consensus 49 ~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 49 RKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 344455553 33565 77888888888888888888888999999999988888887777554 34566777777666
Q ss_pred hh
Q 043060 565 ND 566 (707)
Q Consensus 565 ~~ 566 (707)
.+
T Consensus 129 l~ 130 (321)
T PF08424_consen 129 LR 130 (321)
T ss_pred HH
Confidence 54
No 407
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=49.67 E-value=2.6e+02 Score=27.24 Aligned_cols=89 Identities=13% Similarity=0.045 Sum_probs=42.3
Q ss_pred HHcCCCchHHHHHHHHH----HHCCCCCCcccHHHHHHHHhccCChH-HHHHHHHHHHH---hC--CCCChhHHHHHHHH
Q 043060 105 HSLSSSPVVAIKFYVRM----ILSGFVPNTYTFPFILKSCAKISAIS-EGKQIHAHVLK---LG--LESDPFVHTSLINM 174 (707)
Q Consensus 105 ~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~---~g--~~~~~~~~~~li~~ 174 (707)
+.+.|+...|-++-.-| .+.++++|......++..+...+.-+ .-.++...+++ .| -..|+.....+...
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~ 99 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEK 99 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 44555555444433222 23455555555455555444332211 12223333332 22 23467788888889
Q ss_pred HHhCCChhHHHHHHhcCCC
Q 043060 175 YAQNGELESARLVFNKSSL 193 (707)
Q Consensus 175 ~~~~g~~~~A~~~f~~~~~ 193 (707)
|.+.|++.+|+.-|-.-..
T Consensus 100 ~~~e~~~~~A~~Hfl~~~~ 118 (260)
T PF04190_consen 100 LWKEGNYYEAERHFLLGTD 118 (260)
T ss_dssp HHHTT-HHHHHHHHHTS-H
T ss_pred HHhhccHHHHHHHHHhcCC
Confidence 9999999999888755443
No 408
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=48.93 E-value=4.3e+02 Score=29.61 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=36.8
Q ss_pred HhcCChhHHHHHHHHHHccC---CC------CchhHHHHHHHhhhcCChhhHHHHHH
Q 043060 515 RVHGRLELGESVAKHLLELE---PE------NPGAYVLLSNMYAGAGRWDDVATIRT 562 (707)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~---p~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 562 (707)
...+++..|....+.+.+.. |+ .+..+...+-.+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 45788999999988887642 22 34566677777788999999999997
No 409
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=48.78 E-value=60 Score=34.74 Aligned_cols=134 Identities=19% Similarity=0.112 Sum_probs=90.5
Q ss_pred CCCHhHHHHHHHHHhcc--CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH-cCCHHHHHHHHHhC-CCCCC--HHH
Q 043060 433 QPDDITFVGVLSACNHA--GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR-AGLFDEAEALLKTM-EMKPD--AAI 506 (707)
Q Consensus 433 ~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~-~~~p~--~~~ 506 (707)
-|+..+...++.-...- ..-+-|-.++..|.+ .+.|--...| +..+|-| .|+...|.+.+... ...|. .+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 46666665555444332 223345555555533 3333322222 2334444 78999999987775 44443 344
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 507 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.-.|.....+.|-.-.|-.++.+.+.+....|-++..++++|....+.+.|++.|+...+...
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 556777777788888899999999998877889999999999999999999999998887654
No 410
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=48.18 E-value=97 Score=26.86 Aligned_cols=88 Identities=9% Similarity=0.172 Sum_probs=50.1
Q ss_pred HHhCCCCch--hhhhhhchhhcccCCCChHHHHHHHhcCCC---------CCcchHHHHHHHHHcCCC-chHHHHHHHHH
Q 043060 54 IKTGLHNTQ--FALSKLIEICAVSPFGDLSYALLVFETIRE---------PNQVIWNNIIRGHSLSSS-PVVAIKFYVRM 121 (707)
Q Consensus 54 ~~~~~~~~~--~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~-~~~A~~~~~~m 121 (707)
.+.+..++. ...|.++ +-.+..+.+...+++++.+.. .+..+|+.++.+.+.... ---+..+|..|
T Consensus 29 ~~~~~~~~~k~~fiN~iL--~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 29 QEENASQSTKTIFINCIL--NHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred hhcccChhHHHHHHHHHH--HHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 334444433 2355555 444445555555555555431 355567777777755544 33466677777
Q ss_pred HHCCCCCCcccHHHHHHHHhcc
Q 043060 122 ILSGFVPNTYTFPFILKSCAKI 143 (707)
Q Consensus 122 ~~~g~~p~~~t~~~ll~~~~~~ 143 (707)
.+.+.+++..-|..++++|.+.
T Consensus 107 k~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHHcC
Confidence 7666667777777777766554
No 411
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.78 E-value=72 Score=29.31 Aligned_cols=31 Identities=23% Similarity=0.131 Sum_probs=16.7
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043060 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498 (707)
Q Consensus 468 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 498 (707)
..|+...|..++..+...|+.++|.+..+++
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455555555555555555555555555554
No 412
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=47.34 E-value=5e+02 Score=29.91 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=11.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC
Q 043060 477 CMVDLLGRAGLFDEAEALLKTM 498 (707)
Q Consensus 477 ~li~~~~~~g~~~~A~~~~~~~ 498 (707)
.|+.++...|++++|...++++
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~ 644 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDEL 644 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHH
Confidence 3444555555555555555543
No 413
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.30 E-value=21 Score=35.40 Aligned_cols=117 Identities=17% Similarity=0.157 Sum_probs=74.8
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHH
Q 043060 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGES 525 (707)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~ 525 (707)
..|.+++|++.|...++ ..++....|.--..++.+.++...|++=+... .+.|| ..-|-.-..+-+..|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 45566777777666654 33344455555566677777777777766654 56666 3345445556677888888888
Q ss_pred HHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 526 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
.+..+.+++-+ ..+-..|-...-..+..++-...+++.++.
T Consensus 204 dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 204 DLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHHHH
Confidence 88888887752 234445556666666666666666655543
No 414
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=47.08 E-value=4.4e+02 Score=29.20 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=27.7
Q ss_pred CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCC--CCHHHHHHHHH
Q 043060 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK--PDAAIWTSLLG 512 (707)
Q Consensus 435 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~ll~ 512 (707)
+.....-++..|.+.|..+.+.++.+.+-.+ +.+.|++.+|+..+-+.+-. -+..+| .++.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~----------------~~~~~~~g~AL~~~~ra~d~~~v~~i~~-~ll~ 466 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQR----------------LLKEGRYGEALSWFIRAGDYSLVTRIAD-RLLE 466 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHH------------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------HHHCCCHHHHHHHHHHCCCHHHHHHHHH-HHHH
Confidence 3345566677777777777777777655432 34455666666666555311 122333 2334
Q ss_pred HHHhcCChhHHHHHHHHHHccC--CCCchhHHHHHHHh--hhcCChhhHHHHHHHHhhCCCccCCcccEE
Q 043060 513 ACRVHGRLELGESVAKHLLELE--PENPGAYVLLSNMY--AGAGRWDDVATIRTRLNDKGMKKVPGCSSI 578 (707)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 578 (707)
.|...|... ...+.+.+..-. .+.-..|..+-+.| .+.|++.+|.+.+-.+.+..+ .|..-|.
T Consensus 467 ~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~--~Pk~f~~ 533 (566)
T PF07575_consen 467 EYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPI--APKSFWP 533 (566)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCC--CcHHHHH
Confidence 444444322 111111111100 01111222222232 345778888777666665554 4444444
No 415
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=46.72 E-value=2.4e+02 Score=27.98 Aligned_cols=52 Identities=12% Similarity=0.054 Sum_probs=28.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh---HHHHHHHHHhccCCHHHHHHHHH
Q 043060 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDI---TFVGVLSACNHAGLLDIGRQYFN 460 (707)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~ 460 (707)
+..+-.+.|+..+|.+.|+.+.+. .|-.. .-..|+.+|.....+.+...++.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445677788888877777653 23111 12345556655555554444443
No 416
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=46.66 E-value=1.6e+02 Score=23.97 Aligned_cols=78 Identities=15% Similarity=0.180 Sum_probs=38.8
Q ss_pred chHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043060 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG 429 (707)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (707)
.++|..|.+.+...+.. ...+--.-+..+...|++++|...=.....+|...|-++- -.+.|-.+++...+.++..
T Consensus 22 H~EA~tIa~wL~~~~~~--~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 22 HQEANTIADWLEQEGEM--EEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLAS 97 (116)
T ss_dssp HHHHHHHHHHHHHTTTT--HHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCcH--HHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 45555555555555442 2223333344455667777774444444556666665553 2355666666666666654
Q ss_pred CC
Q 043060 430 EG 431 (707)
Q Consensus 430 ~g 431 (707)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 43
No 417
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=46.57 E-value=70 Score=25.23 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 043060 506 IWTSLLGACRVHGRLELGESVAKHLLELE 534 (707)
Q Consensus 506 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 534 (707)
....+.......|+.++|...+++++++-
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34445566777899999999999888753
No 418
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=45.49 E-value=1.3e+02 Score=25.64 Aligned_cols=63 Identities=19% Similarity=0.125 Sum_probs=40.1
Q ss_pred HHHHHHHHcCCH---HHHHHHHHhC-C-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 043060 477 CMVDLLGRAGLF---DEAEALLKTM-E-MKPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG 539 (707)
Q Consensus 477 ~li~~~~~~g~~---~~A~~~~~~~-~-~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 539 (707)
.+..++.+..+. .+-+.++++. + -.|+ ....--|.-++.+.|+++.+++..+.+++.+|+|..
T Consensus 37 ~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 37 NLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred HHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 344444444433 3344455554 2 2233 333345666789999999999999999999998764
No 419
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=45.18 E-value=1.3e+02 Score=25.40 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=33.7
Q ss_pred HHHHHHHHHHc--cCCCCchhHHHHHHHhhhcCChhhHHHHHHH
Q 043060 522 LGESVAKHLLE--LEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563 (707)
Q Consensus 522 ~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 563 (707)
.+.++|+.+.. ++-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 78888888876 4566778888999999999999999998875
No 420
>PRK11619 lytic murein transglycosylase; Provisional
Probab=44.99 E-value=5e+02 Score=29.27 Aligned_cols=244 Identities=10% Similarity=-0.033 Sum_probs=123.1
Q ss_pred cCCHHHHHHHHHHHhhcC-CCCChhh--HHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHH
Q 043060 312 TSDYKEALMLFRQMLQSN-IEPNDVT--FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388 (707)
Q Consensus 312 ~g~~~~A~~~~~~m~~~g-~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 388 (707)
..+.+.|..++....... ..++... ...+....+..+....+...+........ +..+...-+....+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~---~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ---STSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC---CcHHHHHHHHHHHHccCHHH
Confidence 445677888887764432 2222221 22222222222113444444443332221 33344555556667888888
Q ss_pred HHHHHhcCCCC--C-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHH-HHHHHHhHH
Q 043060 389 AEQVFDGMGYK--T-LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG-RQYFNAMIQ 464 (707)
Q Consensus 389 A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a-~~~~~~~~~ 464 (707)
+...|..|+.. + ..-.-=+..++...|+.++|...|+++.. . .+|-.++.+- +.|..-.- ......-..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~---~~fYG~LAa~-~Lg~~~~~~~~~~~~~~~ 403 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---Q---RGFYPMVAAQ-RLGEEYPLKIDKAPKPDS 403 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---C---CCcHHHHHHH-HcCCCCCCCCCCCCchhh
Confidence 88888888532 2 22233356666678888888888888743 1 2344443321 11211000 000000000
Q ss_pred hcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccC---CCCchhH
Q 043060 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE---PENPGAY 541 (707)
Q Consensus 465 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~ 541 (707)
.....| -..-+..+...|+..+|...+..+-...+......+.......|..+.+..........+ -.-|..|
T Consensus 404 ~~~~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~ 479 (644)
T PRK11619 404 ALTQGP----EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAW 479 (644)
T ss_pred hhccCh----HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcch
Confidence 000001 112345567789999999888876333455566666666778888888887765543211 1123346
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 542 VLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 542 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
......+.+.-.++.+.-.---..|.+.
T Consensus 480 ~~~~~~~a~~~~v~~~lv~ai~rqES~f 507 (644)
T PRK11619 480 NDEFRRYTSGKGIPQSYAMAIARQESAW 507 (644)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcCC
Confidence 6666666666666665532222235555
No 421
>PRK09169 hypothetical protein; Validated
Probab=44.69 E-value=8.4e+02 Score=31.78 Aligned_cols=469 Identities=12% Similarity=0.029 Sum_probs=254.6
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHHHHC-----CCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHh-------CCC
Q 043060 95 QVIWNNIIRGHSLSSSPVVAIKFYVRMILS-----GFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKL-------GLE 162 (707)
Q Consensus 95 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-------g~~ 162 (707)
...|..+.+.+++.-+.....+.+..+-.. .-..+...+..+++++++-.+-..+...-..+... -..
T Consensus 122 ~~~~a~l~n~lsK~~d~~aC~~a~a~ia~q~~~~~~~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~a 201 (2316)
T PRK09169 122 LAQLAHLGNKLSKYPDRPACMAAIAWIAGQLLDALREALDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQA 201 (2316)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHh
Confidence 344555666666555544433333322211 11346677888899998877666555444443211 012
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHHhcCC-----------CCCeehHHHHHHHHHhCCChhHH---HHHHHhCccccCC
Q 043060 163 SDPFVHTSLINMYAQNGELESARLVFNKSS-----------LRDAVSYTALITGYASRGYLDDA---RQLFDEMPIREEN 228 (707)
Q Consensus 163 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-----------~~~~~~~~~li~~~~~~g~~~~A---~~l~~~m~~~~~~ 228 (707)
.+..-...++++++|.-+-......-..+. .-+......++++++|-.+-+.+ ...+..-+..+.+
T Consensus 202 l~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~ 281 (2316)
T PRK09169 202 MDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPG 281 (2316)
T ss_pred cchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChh
Confidence 344455667778887665544433332221 11455667788888886654433 2222222212222
Q ss_pred C--CCCHhhHHHHHHHHhccCCchHHHHHHH----HHHH---cCCCchhHHHHHHHHHHHhcCCHHHHH----HHHHhcC
Q 043060 229 F--VPNESTVVTVLSACAHMGSLELGNWVCS----LIEG---HGLGSNLHVTNALIDMYSKCGDLVKAR----DLFESIE 295 (707)
Q Consensus 229 ~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~----~~~~---~g~~~~~~~~~~li~~~~~~g~~~~A~----~~~~~~~ 295 (707)
. .-|..-+...++++++..+-+.+...-. .+.. ..-..+..-....+++++|..+.+.+. .+-+++.
T Consensus 282 lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~ 361 (2316)
T PRK09169 282 LRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLA 361 (2316)
T ss_pred hhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 2 2466678889999998876654433322 2211 112345566667788888888766533 3333332
Q ss_pred C-------CChhhHHHHHHHHHhcCCHHH----HHHHHHHHhhc-C--CCCChhhHHhHHHHHhccCCchHHHHHHHHHH
Q 043060 296 K-------RDVISWNVMIGGYTHTSDYKE----ALMLFRQMLQS-N--IEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361 (707)
Q Consensus 296 ~-------~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~-g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 361 (707)
. -|..-....++++.+-++-+. |..+...+... + -..|..-...++.+|++-+.-+.+......+.
T Consensus 362 ~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA 441 (2316)
T PRK09169 362 RDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALA 441 (2316)
T ss_pred hChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 1 144455667788888766432 23333333221 1 23566778889999998877664443332221
Q ss_pred H---h----CCCCCcHHHHhHHhhHHHhcCCHHH----HHHHHhcCC-------CCChHHHHHHHHHHHHcCCHHHHHH-
Q 043060 362 K---N----HQKLNNVSLWTSLIDMYAKCGNIKA----AEQVFDGMG-------YKTLASWNAMISGLAMHGKADKALS- 422 (707)
Q Consensus 362 ~---~----~~~~~~~~~~~~li~~y~~~g~~~~----A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~- 422 (707)
. . .... +..-....+.+++|.++-+. +..+...+. .-+..-....+.++++-++.+.+..
T Consensus 442 ~rl~~~a~lr~~f-n~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~a 520 (2316)
T PRK09169 442 ARLAADARLRNAL-SAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAA 520 (2316)
T ss_pred HHHhhchhhhhhC-CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHH
Confidence 1 1 1222 56667778888888776442 233333331 1244556777888888887655433
Q ss_pred ---HHHHHHHC---CCCCCHhHHHHHHHHHhccCCHHHHH----HHHHHhHHhc--CCCCChHHHHHHHHHHHHcCCHH-
Q 043060 423 ---LFSRMIGE---GLQPDDITFVGVLSACNHAGLLDIGR----QYFNAMIQDY--KISPKLQHYGCMVDLLGRAGLFD- 489 (707)
Q Consensus 423 ---~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~----~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~- 489 (707)
+..++... --.-+..-+...+.++++-.+.+.+. .+...+.++- .-..+.......++++.+-+.-.
T Consensus 521 A~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~a 600 (2316)
T PRK09169 521 AEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDA 600 (2316)
T ss_pred HHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchh
Confidence 33333221 11234455677888899877643332 3333332221 11235567777888898877643
Q ss_pred ---HHHHHHHhCCCC------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHc---cC-----CCCchhHHHHHHHhhhcC
Q 043060 490 ---EAEALLKTMEMK------PDAAIWTSLLGACRVHGRLELGESVAKHLLE---LE-----PENPGAYVLLSNMYAGAG 552 (707)
Q Consensus 490 ---~A~~~~~~~~~~------p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~-----p~~~~~~~~l~~~~~~~g 552 (707)
.|..+...+... -|..-+...++++.+-.+.+........+-. .+ --++.-..++++++++-.
T Consensus 601 cr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp 680 (2316)
T PRK09169 601 CRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWP 680 (2316)
T ss_pred HHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCC
Confidence 233344443111 2566778888999988776665544433332 11 125556677778888877
Q ss_pred ChhhHHHHHHHH
Q 043060 553 RWDDVATIRTRL 564 (707)
Q Consensus 553 ~~~~a~~~~~~m 564 (707)
+.+.+.+....+
T Consensus 681 ~~~~c~~Aa~aL 692 (2316)
T PRK09169 681 DEAACRAAALAL 692 (2316)
T ss_pred CcHHHHHHHHHH
Confidence 766555544444
No 422
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=42.80 E-value=1.4e+02 Score=23.14 Aligned_cols=66 Identities=12% Similarity=0.154 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHH
Q 043060 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDAR 216 (707)
Q Consensus 149 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 216 (707)
+.++++.+.+.|+- +......+-..-...|+.+.|+++++.++ +....|...+.++-+.|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 34555566655532 11122222222224577788888888877 77777777777777777655443
No 423
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=42.12 E-value=1.7e+02 Score=24.64 Aligned_cols=71 Identities=15% Similarity=0.252 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043060 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498 (707)
Q Consensus 419 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 498 (707)
+..+-+.......+-|+....-..+.||-+.+++..|.++|+.++.+ ..+....|-.++ ++-..+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v---------~elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV---------KELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH---------HHHHHHHHHh
Confidence 34445556666678899999999999999999999999999988653 333333455444 3344555555
Q ss_pred CC
Q 043060 499 EM 500 (707)
Q Consensus 499 ~~ 500 (707)
++
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 54
No 424
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=41.96 E-value=35 Score=28.84 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=23.9
Q ss_pred HcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 043060 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSC 140 (707)
Q Consensus 106 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 140 (707)
...|.-..|-.+|++|+++|-+|| .|+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 344666778889999999988776 466666554
No 425
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=41.77 E-value=98 Score=26.07 Aligned_cols=53 Identities=15% Similarity=0.320 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHc--cCCCCchhHHHHHHHhhhcCChhhHHHHHH
Q 043060 504 AAIWTSLLGACRVHGRLELGESVAKHLLE--LEPENPGAYVLLSNMYAGAGRWDDVATIRT 562 (707)
Q Consensus 504 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 562 (707)
..+|-.++..| +...++|..+.. ++...+..|...+..+...|++.+|.++++
T Consensus 69 LkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 69 LKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34565555543 335667777765 445667788888999999999999998876
No 426
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=41.22 E-value=3.8e+02 Score=26.81 Aligned_cols=10 Identities=40% Similarity=0.697 Sum_probs=7.1
Q ss_pred HHHHHHHhhc
Q 043060 641 EKLAIAYGLI 650 (707)
Q Consensus 641 ~~la~~~~~~ 650 (707)
+.||.+||.-
T Consensus 321 ~~MA~aFgVS 330 (393)
T KOG0687|consen 321 ESMAKAFGVS 330 (393)
T ss_pred HHHHHHhCch
Confidence 6678888763
No 427
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.87 E-value=51 Score=32.31 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 443 (707)
-||..|..-.+.||+++|+.++++..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788999999999999999999999988776555665443
No 428
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=40.34 E-value=19 Score=19.01 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=9.2
Q ss_pred CchhHHHHHHhh
Q 043060 668 GNCHSATKLISK 679 (707)
Q Consensus 668 ~~~~~~~~~~s~ 679 (707)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 457899998874
No 429
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=40.16 E-value=3.9e+02 Score=26.69 Aligned_cols=97 Identities=16% Similarity=0.062 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHhHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043060 451 LLDIGRQYFNAMIQDYKI---SPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVA 527 (707)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 527 (707)
-.++|.+.|+........ ..+......+.....+.|..++-..+++.....++...-..++.+.....+.+.-.+++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 367788888888763122 34566666777777788887776666666655567888888999998888998888899
Q ss_pred HHHHccC-CCCchhHHHHHHH
Q 043060 528 KHLLELE-PENPGAYVLLSNM 547 (707)
Q Consensus 528 ~~~~~~~-p~~~~~~~~l~~~ 547 (707)
+.++.-+ -.....+..+..+
T Consensus 225 ~~~l~~~~v~~~d~~~~~~~~ 245 (324)
T PF11838_consen 225 DLLLSNDKVRSQDIRYVLAGL 245 (324)
T ss_dssp HHHHCTSTS-TTTHHHHHHHH
T ss_pred HHHcCCcccccHHHHHHHHHH
Confidence 9888843 2233344444433
No 430
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=39.12 E-value=2.3e+02 Score=23.65 Aligned_cols=62 Identities=21% Similarity=0.138 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHc-------cCCCCchh----HHHHHHHhhhcCChhhHHHHHHHH
Q 043060 503 DAAIWTSLLGACRVHGRLELGESVAKHLLE-------LEPENPGA----YVLLSNMYAGAGRWDDVATIRTRL 564 (707)
Q Consensus 503 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~----~~~l~~~~~~~g~~~~a~~~~~~m 564 (707)
|...+..|..++...|++++++...++++. ++.+.... ...-+.++...|+.++|...|+..
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 345666677777888888777776666653 34433333 334567788899999999888654
No 431
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.03 E-value=5.5e+02 Score=28.00 Aligned_cols=123 Identities=14% Similarity=0.166 Sum_probs=0.0
Q ss_pred HhccCCHHHHHHHHHHhHHhc----------CCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC----------CCCCCH-
Q 043060 446 CNHAGLLDIGRQYFNAMIQDY----------KISPKLQHYGCMVDLLGRAGLFDEAEALLKTM----------EMKPDA- 504 (707)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~----------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----------~~~p~~- 504 (707)
+.+...++++...|...+..+ ..+-.+.+.-.+.+++..+|+.+-|.+++++. .+.|..
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Q ss_pred ---------------HHHHHHHHHHHhcCChhHHHHHHHHHHccCCC-CchhHHHHHHHh-hhcCChhhHHHHHHHHhhC
Q 043060 505 ---------------AIWTSLLGACRVHGRLELGESVAKHLLELEPE-NPGAYVLLSNMY-AGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 505 ---------------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~-~~~g~~~~a~~~~~~m~~~ 567 (707)
.+.-..+....+.|-+..|.+..+.++.++|. ||.....+++.| .++.++.=-+++++.....
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q ss_pred C
Q 043060 568 G 568 (707)
Q Consensus 568 ~ 568 (707)
+
T Consensus 408 n 408 (665)
T KOG2422|consen 408 N 408 (665)
T ss_pred c
No 432
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=38.45 E-value=2.4e+02 Score=23.75 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhc
Q 043060 352 LGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395 (707)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 395 (707)
.+.++|..|...|........|..-...+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77778888887776665677788888888888888888888763
No 433
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=38.38 E-value=4.3e+02 Score=26.60 Aligned_cols=127 Identities=13% Similarity=0.163 Sum_probs=81.8
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc------cCCHHHHHHHHHHhHHhcCCCCCh
Q 043060 399 KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH------AGLLDIGRQYFNAMIQDYKISPKL 472 (707)
Q Consensus 399 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~------~g~~~~a~~~~~~~~~~~~~~p~~ 472 (707)
.|-..|+- +-.++++.++++....+. |..+.....|.+|-. .-+|.....+|+.+.. +.|++
T Consensus 262 QDr~lW~r--------~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSP 329 (415)
T COG4941 262 QDRSLWDR--------ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSP 329 (415)
T ss_pred cchhhhhH--------HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCC
Confidence 45556653 235688888888888764 888887777776632 3467777777776643 34443
Q ss_pred H-HHHHHHHHHHHcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 043060 473 Q-HYGCMVDLLGRAGLFDEAEALLKTMEMKPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 473 ~-~~~~li~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 538 (707)
. +.|- .-+++...-.+.++.+++.+.-+|. ...+..-.+.+.+.|+.++|...|++++.+.++..
T Consensus 330 vV~LNR-AVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 330 VVTLNR-AVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred eEeehH-HHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 2 2222 2233444446667777776644432 33455566778889999999999999998877543
No 434
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=37.98 E-value=6.4e+02 Score=28.46 Aligned_cols=118 Identities=12% Similarity=0.100 Sum_probs=56.1
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHh--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCH
Q 043060 411 LAMHGKADKALSLFSRMIGEGLQPDDI--TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488 (707)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 488 (707)
+..-|+-++|-.+.++|.... .|--. -..++..+|+-.|+.....+++.-.+. ....|+.-+..+.-++.-..++
T Consensus 511 L~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc--ccchHHHHHHHHHheeeEecCh
Confidence 344566667777777776532 22111 122344566666666666666655443 3333444444333344444555
Q ss_pred HHHHHHHHhC--CCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHc
Q 043060 489 DEAEALLKTM--EMKPDAA--IWTSLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 489 ~~A~~~~~~~--~~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
+....+.+-+ ...|.+. +-.+|.-+|.-.|+ .+|..+++-+..
T Consensus 588 ~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 5554444443 1223322 22334444544443 445555555544
No 435
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=37.56 E-value=4.1e+02 Score=26.12 Aligned_cols=50 Identities=16% Similarity=0.104 Sum_probs=27.1
Q ss_pred CHHHHHHHHHhcCCCC-hhhHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCC
Q 043060 283 DLVKARDLFESIEKRD-VISWNVMIGGYTH----TSDYKEALMLFRQMLQSNIEP 332 (707)
Q Consensus 283 ~~~~A~~~~~~~~~~~-~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p 332 (707)
+...|..+|...-+.+ ......|...|.. ..+..+|..+|++..+.|..+
T Consensus 92 ~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~ 146 (292)
T COG0790 92 DKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVE 146 (292)
T ss_pred cHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChh
Confidence 3555666666544432 2333334444433 236677777777777776544
No 436
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=37.06 E-value=2.4e+02 Score=27.43 Aligned_cols=61 Identities=25% Similarity=0.223 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 508 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
..+=.++...++++.|....++.+.++|+++.-..--+-+|.+.|-..-|++-++...+.-
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 3444567888999999999999999999998888888889999999998888877765543
No 437
>PHA02875 ankyrin repeat protein; Provisional
Probab=36.93 E-value=5.1e+02 Score=27.07 Aligned_cols=20 Identities=5% Similarity=0.283 Sum_probs=11.6
Q ss_pred HHHHHhCCChhHHHHHHhcC
Q 043060 172 INMYAQNGELESARLVFNKS 191 (707)
Q Consensus 172 i~~~~~~g~~~~A~~~f~~~ 191 (707)
+...++.|+.+.+..+++.-
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~ 91 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLG 91 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcC
Confidence 34445666766666666543
No 438
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.92 E-value=3.5e+02 Score=29.80 Aligned_cols=85 Identities=13% Similarity=0.114 Sum_probs=57.8
Q ss_pred HHcCCHHHHHHHHHh-CCCCC-C------HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCCh
Q 043060 483 GRAGLFDEAEALLKT-MEMKP-D------AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554 (707)
Q Consensus 483 ~~~g~~~~A~~~~~~-~~~~p-~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 554 (707)
.+..++..+.++|.. |..-| | ......|--.|....++|.|.++++++-+.+|.++-.-.....+....|.-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 455666667776654 32111 1 334556666667777888888888888888888877777777788888888
Q ss_pred hhHHHHHHHHhhC
Q 043060 555 DDVATIRTRLNDK 567 (707)
Q Consensus 555 ~~a~~~~~~m~~~ 567 (707)
++|..+.......
T Consensus 445 e~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 445 EEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHhh
Confidence 8888777666543
No 439
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.26 E-value=58 Score=31.96 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHh
Q 043060 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS 339 (707)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 339 (707)
-|+..|..-.+.|++++|++++++..+.|+.--..||..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 367888888899999999999999988887654455443
No 440
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=36.12 E-value=5.4e+02 Score=27.07 Aligned_cols=172 Identities=9% Similarity=-0.009 Sum_probs=80.9
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 043060 101 IIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180 (707)
Q Consensus 101 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 180 (707)
-|.++...| ..+++.+....... ++...+.....++....+......+.+.+. .++..+....+..+.+.+.
T Consensus 44 hLdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L~----d~~~~vr~aaa~ALg~i~~ 115 (410)
T TIGR02270 44 HVDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVLQ----AGPEGLCAGIQAALGWLGG 115 (410)
T ss_pred HHHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHhc----CCCHHHHHHHHHHHhcCCc
Confidence 366777777 45677666665432 233333333333332222221222222221 4555567777777777776
Q ss_pred hhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHH
Q 043060 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE 260 (707)
Q Consensus 181 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 260 (707)
.+....+..-....+.....+.+.++...+. .+...+...+ . .+|...-...+.+++..+..+....+ ..+.
T Consensus 116 ~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L---~--d~d~~Vra~A~raLG~l~~~~a~~~L-~~al 187 (410)
T TIGR02270 116 RQAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAAL---T--HEDALVRAAALRALGELPRRLSESTL-RLYL 187 (410)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHh---c--CCCHHHHHHHHHHHHhhccccchHHH-HHHH
Confidence 6666555555555555554455555544331 1222333322 1 23444445555555555543322222 2221
Q ss_pred HcCCCchhHHHHHHHHHHHhcCCHHHHHHHHH
Q 043060 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLFE 292 (707)
Q Consensus 261 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 292 (707)
-..|..+-..-+.+....|. ++|.....
T Consensus 188 ---~d~~~~VR~aA~~al~~lG~-~~A~~~l~ 215 (410)
T TIGR02270 188 ---RDSDPEVRFAALEAGLLAGS-RLAWGVCR 215 (410)
T ss_pred ---cCCCHHHHHHHHHHHHHcCC-HhHHHHHH
Confidence 13455555555555555555 44444433
No 441
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=35.87 E-value=5.7e+02 Score=27.25 Aligned_cols=103 Identities=14% Similarity=0.073 Sum_probs=60.3
Q ss_pred hhHHHhcCCHHHHHHHHhcCC---C------C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------CCCCCCHh
Q 043060 377 IDMYAKCGNIKAAEQVFDGMG---Y------K---TLASWNAMISGLAMHGKADKALSLFSRMIG-------EGLQPDDI 437 (707)
Q Consensus 377 i~~y~~~g~~~~A~~~~~~~~---~------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~~~ 437 (707)
.+.+.-.|++.+|.+++.... . + .-..||.|...+.+.|.+.-+..+|.+..+ .|++|...
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 344556788888888876542 1 1 223467777666677777766666666653 45555321
Q ss_pred -----------HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 043060 438 -----------TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482 (707)
Q Consensus 438 -----------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 482 (707)
+|+ ..-.+.+.|+.-.|.+-|...++.+. .++..|--|..++
T Consensus 327 ~tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~vfh--~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 327 FTLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHVFH--RNPRLWLRLAECC 379 (696)
T ss_pred eehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHH
Confidence 222 22245677777777777777766433 3444565555554
No 442
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.48 E-value=58 Score=36.68 Aligned_cols=95 Identities=17% Similarity=0.242 Sum_probs=60.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 043060 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493 (707)
Q Consensus 414 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 493 (707)
+.++++.+.+.+...--| .++|.-+.+.|-.+-|+.+.+.=..+ .++...+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHH
Confidence 445666655544332211 12344455666666666555433222 223456888998888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 043060 494 LLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 494 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
.-.+.. |..+|..|+.....+|+.+.|+..|++...
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 887765 678899999999999999988888887654
No 443
>PHA02875 ankyrin repeat protein; Provisional
Probab=35.24 E-value=5.4e+02 Score=26.87 Aligned_cols=115 Identities=13% Similarity=0.168 Sum_probs=52.4
Q ss_pred HHHHhCCChhHHHHHHhcCCCCCee--hHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCch
Q 043060 173 NMYAQNGELESARLVFNKSSLRDAV--SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250 (707)
Q Consensus 173 ~~~~~~g~~~~A~~~f~~~~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~ 250 (707)
...++.|+.+-+.-+++.-..++.. ...+.+...+..|+.+.+..+++.-.. ..-..+..-. +.+...+..|+.
T Consensus 40 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~g~-tpL~~A~~~~~~- 115 (413)
T PHA02875 40 KLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKF--ADDVFYKDGM-TPLHLATILKKL- 115 (413)
T ss_pred HHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCc--ccccccCCCC-CHHHHHHHhCCH-
Confidence 3334455555554444433222111 112234556677888776666654311 0000111111 223333445554
Q ss_pred HHHHHHHHHHHcCCCchhHH--HHHHHHHHHhcCCHHHHHHHHHhc
Q 043060 251 LGNWVCSLIEGHGLGSNLHV--TNALIDMYSKCGDLVKARDLFESI 294 (707)
Q Consensus 251 ~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~ 294 (707)
++.+.+.+.|..++... ..+.+...+..|+.+-+..+++.-
T Consensus 116 ---~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g 158 (413)
T PHA02875 116 ---DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK 158 (413)
T ss_pred ---HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 34555566665554321 223444556677777666666543
No 444
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.80 E-value=78 Score=22.72 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=8.7
Q ss_pred HHHHHhccCCHHHHHHHHHHh
Q 043060 442 VLSACNHAGLLDIGRQYFNAM 462 (707)
Q Consensus 442 ll~a~~~~g~~~~a~~~~~~~ 462 (707)
++.++...|++++|.++.+.+
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444443
No 445
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=34.72 E-value=1.4e+02 Score=20.02 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=22.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 043060 412 AMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444 (707)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 444 (707)
.+.|-.+++..++++|.+.|+.-+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 355666677777777777777766666655543
No 446
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=34.15 E-value=1.4e+02 Score=28.81 Aligned_cols=11 Identities=55% Similarity=0.709 Sum_probs=3.9
Q ss_pred cCCHHHHHHHH
Q 043060 414 HGKADKALSLF 424 (707)
Q Consensus 414 ~g~~~~A~~~~ 424 (707)
.|++++|+++|
T Consensus 191 ~g~~~~A~~~l 201 (247)
T PF11817_consen 191 LGDYDKALKLL 201 (247)
T ss_pred CCCHHHHHHHH
Confidence 33333333333
No 447
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=34.06 E-value=3.8e+02 Score=24.75 Aligned_cols=131 Identities=13% Similarity=0.158 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHH
Q 043060 401 LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL-QHYGCMV 479 (707)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li 479 (707)
+...+.++..+...|+++.|-+.|.-+++.. ..|.... +.-+.+++..- +-.... ..+..|+
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~------------W~iG~eIL~~~----~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSL------------WGIGAEILMRR----GEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhc------------chHHHHHHHcC----CCcchHHHHHHHHH
Confidence 3467888889999999999999999998742 3343322 33344444322 112222 4455555
Q ss_pred HHHHHcCCHHHHHHHHHhCC--------CCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHcc--CC---CCchhHHH
Q 043060 480 DLLGRAGLFDEAEALLKTME--------MKPD---AAIWTSLLGACRVHGRLELGESVAKHLLEL--EP---ENPGAYVL 543 (707)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~--------~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~p---~~~~~~~~ 543 (707)
..|.......+...-....+ ..|. ...|..++..-.+....+.+.++.+++-++ .| ++++.|..
T Consensus 104 ~~y~~~~~~~~~~~~~~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~~el~~i 183 (199)
T PF04090_consen 104 SFYPSRKAFNQYYNRRIIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSPPYMDDGELWFI 183 (199)
T ss_pred HHHHHhhhccchhhhhcccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHHH
Confidence 66654433333222211111 1132 223445555444444566677777777764 34 36666665
Q ss_pred HHHHh
Q 043060 544 LSNMY 548 (707)
Q Consensus 544 l~~~~ 548 (707)
.+-++
T Consensus 184 ~~m~~ 188 (199)
T PF04090_consen 184 RGMCH 188 (199)
T ss_pred HHHHH
Confidence 55443
No 448
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=33.85 E-value=87 Score=32.82 Aligned_cols=48 Identities=19% Similarity=0.124 Sum_probs=22.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHH-HHHHhccCCHHHHHHHHHHhH
Q 043060 414 HGKADKALSLFSRMIGEGLQPDDITFVGV-LSACNHAGLLDIGRQYFNAMI 463 (707)
Q Consensus 414 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~ 463 (707)
.++++.|+.++.+.++ +.||...|-+. ..++.+.+++..|..=+..++
T Consensus 17 ~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kai 65 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAI 65 (476)
T ss_pred cchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhh
Confidence 3445555555555555 44544433222 134445555555544444443
No 449
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=33.72 E-value=2.9e+02 Score=23.29 Aligned_cols=59 Identities=20% Similarity=0.102 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHH
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI-WTSLLGACRVHGRLELGESVAKH 529 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~ 529 (707)
...+--++..++.=.|..++|.++++..+.-+.-.. -.-++..|....+-++-.++-++
T Consensus 65 kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 65 KLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 334445566666667777777777776655444322 23456666666555554444333
No 450
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.65 E-value=5.9e+02 Score=26.79 Aligned_cols=165 Identities=12% Similarity=-0.029 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHC---CC-CCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHH
Q 043060 112 VVAIKFYVRMILS---GF-VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187 (707)
Q Consensus 112 ~~A~~~~~~m~~~---g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 187 (707)
++...++...... |+ ..+......++..+ .|+...+..+++.+... ........+..+...
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~-------------~~~It~~~v~~~~~~ 218 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALG-------------VDSITLELLEEALQK 218 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHc-------------cCCCCHHHHHHHHhh
Q ss_pred HhcCCCCCeehHHHHHHHHHh---CCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCC-----chHHHHHHHHH
Q 043060 188 FNKSSLRDAVSYTALITGYAS---RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS-----LELGNWVCSLI 259 (707)
Q Consensus 188 f~~~~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~-----~~~a~~~~~~~ 259 (707)
......++...+..+++++.+ .++++.|+..+..|.. .|..|....-..+..++-..|. ...+...++..
T Consensus 219 ~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~--~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~ 296 (413)
T PRK13342 219 RAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLE--AGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAV 296 (413)
T ss_pred hhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHH
Q ss_pred HHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043060 260 EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293 (707)
Q Consensus 260 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 293 (707)
...|++.-.......+-.++.+-+-..+...++.
T Consensus 297 ~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~ 330 (413)
T PRK13342 297 ERIGMPEGRIALAQAVIYLALAPKSNAAYTAINA 330 (413)
T ss_pred HHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHH
No 451
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=33.64 E-value=96 Score=30.47 Aligned_cols=77 Identities=8% Similarity=0.119 Sum_probs=50.3
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHH-HHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHH
Q 043060 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTS-LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545 (707)
Q Consensus 469 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~-ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 545 (707)
..|+..|...+.--.+.|.+.+.-.++.+. ...|. +..|-. -..-+..+++++.+..++.+.+.++|++|..|....
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 345555555554444556666666666664 34453 556643 223356788999999999999999999998776543
No 452
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=33.25 E-value=4.3e+02 Score=25.09 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=19.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCC-CCCH
Q 043060 412 AMHGKADKALSLFSRMIGEGL-QPDD 436 (707)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~g~-~p~~ 436 (707)
...|+++.|+++.+.+++.|. .|+.
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~ 119 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQ 119 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCcc
Confidence 457888999999998888875 3544
No 453
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.01 E-value=69 Score=22.98 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=20.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043060 400 TLASWNAMISGLAMHGKADKALSLFSRMIG 429 (707)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (707)
|..-.-.+|.+|.+.|++++|.+..+++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344567888888888888888887765
No 454
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=32.87 E-value=48 Score=28.04 Aligned_cols=34 Identities=29% Similarity=0.557 Sum_probs=25.2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 043060 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446 (707)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 446 (707)
....|.-.+|..+|++|++.|-+||. ++.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456677899999999999999985 45555543
No 455
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=32.00 E-value=6.2e+02 Score=26.58 Aligned_cols=58 Identities=12% Similarity=0.104 Sum_probs=43.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 043060 476 GCMVDLLGRAGLFDEAEALLKTME--MKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL 533 (707)
Q Consensus 476 ~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 533 (707)
..|+.-|...|+..||...+++++ +-...+++.+++.+..+.|+-+.-..+++..+.-
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s 572 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS 572 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 346777889999999999999974 3345788889998888888866555555555543
No 456
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=31.55 E-value=2.3e+02 Score=23.87 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=35.5
Q ss_pred HHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCC
Q 043060 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365 (707)
Q Consensus 318 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 365 (707)
..+-+.......+.|++...-..+++|.+.+++..|..+++-+...-.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g 115 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG 115 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc
Confidence 334455555667788888888888888888888888888887765433
No 457
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=31.47 E-value=1.4e+02 Score=20.02 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=15.6
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 043060 142 KISAISEGKQIHAHVLKLGLESDPFVHTSLI 172 (707)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 172 (707)
+.|-+.++..+++.|.+.|+.-+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555555544444443
No 458
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=30.61 E-value=5.4e+02 Score=25.41 Aligned_cols=54 Identities=15% Similarity=0.048 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043060 477 CMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHL 530 (707)
Q Consensus 477 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 530 (707)
.....|..+|.+.+|.++.++. ...| +...|..|+..+...||--.+.+-++++
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3445566667777777766664 3333 3556666666677766655555544444
No 459
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=30.57 E-value=2.2e+02 Score=30.28 Aligned_cols=89 Identities=12% Similarity=0.188 Sum_probs=58.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC--------CchhHH
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE--------NPGAYV 542 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~--------~~~~~~ 542 (707)
++..|-..+.-|...+++++|.++.+-.+ +...|.+|......+.+..-++..|..+.+.+.- -+..-.
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~ 648 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEE 648 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHH
Confidence 34456666677888888898888877654 5678888888888888887777777766654320 112223
Q ss_pred HHHHHhhhcCChhhHHHHHH
Q 043060 543 LLSNMYAGAGRWDDVATIRT 562 (707)
Q Consensus 543 ~l~~~~~~~g~~~~a~~~~~ 562 (707)
.++....-.|+..||..++.
T Consensus 649 ~mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 649 QMAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHHhccchhhhHHHH
Confidence 34444555677777776654
No 460
>PF15469 Sec5: Exocyst complex component Sec5
Probab=30.29 E-value=4.1e+02 Score=23.99 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=13.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhHH
Q 043060 442 VLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 442 ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
-|.-|.+.|+++.+...|..+..
T Consensus 92 ~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 92 NLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHH
Confidence 44555666666666666665544
No 461
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=30.23 E-value=1.9e+02 Score=31.94 Aligned_cols=62 Identities=13% Similarity=0.299 Sum_probs=24.8
Q ss_pred CHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043060 232 NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE 295 (707)
Q Consensus 232 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 295 (707)
+.....-++..|.+.|-.+.+..+...+-..-+ ...-|..-+..+.++|+......+-+.+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444556666677777766666666665544321 12234445555666666665555544433
No 462
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=30.08 E-value=5.2e+02 Score=25.10 Aligned_cols=82 Identities=17% Similarity=0.133 Sum_probs=44.0
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 448 (707)
++.....+...|.+.|++.+|+.-|-.-..++...+..++.-....|...++ |.+. ...+--|.-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi-~RaVL~yL~ 153 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFI-ARAVLQYLC 153 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHH-HHHHHHHHH
Confidence 7788889999999999999998887544333332222222222222222221 1111 222234555
Q ss_pred cCCHHHHHHHHHHhHHh
Q 043060 449 AGLLDIGRQYFNAMIQD 465 (707)
Q Consensus 449 ~g~~~~a~~~~~~~~~~ 465 (707)
.+++..|...++...+.
T Consensus 154 l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 154 LGNLRDANELFDTFTSK 170 (260)
T ss_dssp TTBHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 67788888877766553
No 463
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=29.64 E-value=5e+02 Score=24.72 Aligned_cols=139 Identities=18% Similarity=0.173 Sum_probs=73.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHH
Q 043060 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLG 353 (707)
Q Consensus 274 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 353 (707)
-+..|.+.-++.-|...++++.+|= .+- ..+--|.+..+.+---++.+-....++.-+..-+..++ +...|+..+|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEPI-QSR-CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQa 211 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEPI-QSR-CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQA 211 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhhH-Hhh-hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHH
Confidence 4566777777777766666666541 111 11222333333222223333333344444333333222 2334554444
Q ss_pred HHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 043060 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433 (707)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 433 (707)
...++.-... -| +-.+..+|+-..+|.+.....|+..+. .+++++|.+.+.++-+.|..
T Consensus 212 lNnLQst~~g-------------------~g-~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgys 270 (333)
T KOG0991|consen 212 LNNLQSTVNG-------------------FG-LVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYS 270 (333)
T ss_pred HHHHHHHhcc-------------------cc-ccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCC
Confidence 4333322111 11 112355666666777777777777654 56799999999999999988
Q ss_pred CCHh
Q 043060 434 PDDI 437 (707)
Q Consensus 434 p~~~ 437 (707)
|...
T Consensus 271 p~Di 274 (333)
T KOG0991|consen 271 PEDI 274 (333)
T ss_pred HHHH
Confidence 8765
No 464
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=29.44 E-value=3.9e+02 Score=26.52 Aligned_cols=51 Identities=24% Similarity=0.248 Sum_probs=27.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043060 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327 (707)
Q Consensus 275 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (707)
+..+-+.+++......+..+. .+..-...+..+...|++..|+++..+..+
T Consensus 105 l~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 105 LRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 334444444444444444432 223334456666777777777777776654
No 465
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=29.29 E-value=2.7e+02 Score=21.51 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHH
Q 043060 355 WIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420 (707)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 420 (707)
.++..+.+.|+-. . ...-...+...+.++|.++++.++.++..+|..+..++...|...-|
T Consensus 20 ~v~~~L~~~~Vlt--~---~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 20 YLWDHLLSRGVFT--P---DMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHhcCCCC--H---HHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3455555555442 1 12222233455678888888888888888888888888877765444
No 466
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=29.22 E-value=3.2e+02 Score=24.81 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=13.5
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCH
Q 043060 480 DLLGRAGLFDEAEALLKTMEMKPDA 504 (707)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~p~~ 504 (707)
-.|.+.|.+++|.+++++.-..|+.
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~d~~~ 143 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFSDPES 143 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhcCCCc
Confidence 3455666666666666664224443
No 467
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=28.67 E-value=1.8e+02 Score=26.37 Aligned_cols=31 Identities=26% Similarity=0.511 Sum_probs=25.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHccCCCCchh
Q 043060 509 SLLGACRVHGRLELGESVAKHLLELEPENPGA 540 (707)
Q Consensus 509 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 540 (707)
..+..|.+.|.+++|.+++++..+ +|++...
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 345679999999999999999998 7766543
No 468
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=28.13 E-value=4.7e+02 Score=23.99 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=28.5
Q ss_pred HHHhcCCHHHHHHHHhcCCC------CChHHHHHHHH-HHHHcCC--HHHHHHHHHHHHHC
Q 043060 379 MYAKCGNIKAAEQVFDGMGY------KTLASWNAMIS-GLAMHGK--ADKALSLFSRMIGE 430 (707)
Q Consensus 379 ~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~~ 430 (707)
.....|++++|..-++++.. +-...|..+.. +++.++. +-+|.-++.-....
T Consensus 38 ~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 34455667777766665532 12334555554 5665554 55666666655543
No 469
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=27.81 E-value=5.9e+02 Score=24.97 Aligned_cols=78 Identities=13% Similarity=-0.043 Sum_probs=45.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcC------------
Q 043060 489 DEAEALLKTMEMKPDAAIWTSLLGACRV----HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG------------ 552 (707)
Q Consensus 489 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------ 552 (707)
..|...+.++-..-+......|...|.. ..|.++|...|.++-+.+. ......+. .+...|
T Consensus 172 ~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~ 248 (292)
T COG0790 172 KKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAA 248 (292)
T ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccc
Confidence 3566666665222233333334433322 3477888888888888776 45666666 555444
Q ss_pred ---ChhhHHHHHHHHhhCCC
Q 043060 553 ---RWDDVATIRTRLNDKGM 569 (707)
Q Consensus 553 ---~~~~a~~~~~~m~~~~~ 569 (707)
+...|...+......+.
T Consensus 249 ~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 249 KEEDKKQALEWLQKACELGF 268 (292)
T ss_pred cCCCHHHHHHHHHHHHHcCC
Confidence 56666666666666554
No 470
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=27.37 E-value=4.5e+02 Score=28.57 Aligned_cols=91 Identities=20% Similarity=0.256 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccC-CCCchhHHHHHHHhhhc-
Q 043060 474 HYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE-PENPGAYVLLSNMYAGA- 551 (707)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~- 551 (707)
.-.+|-+-+....++.-|.++-++.++. ....|.+..-+|.+.+++..|.+-|.+++++. .+-|.+...+++.-...
T Consensus 558 asecLRdqLie~ErYqlaV~mckKc~iD-~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~ieGgp 636 (1141)
T KOG1811|consen 558 ASECLRDQLIEAERYQLAVEMCKKCGID-TFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINLIEGGP 636 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCC-cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHhhcCCC
Confidence 3445666666677777777777776653 35689999999999999999999999999875 33344445555443322
Q ss_pred -CChhhHHHHHHHHh
Q 043060 552 -GRWDDVATIRTRLN 565 (707)
Q Consensus 552 -g~~~~a~~~~~~m~ 565 (707)
.+..++.++++...
T Consensus 637 p~dVq~Vrem~dhla 651 (1141)
T KOG1811|consen 637 PRDVQDVREMLDHLA 651 (1141)
T ss_pred cchHHHHHHHHHHhc
Confidence 23444444444443
No 471
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=27.27 E-value=1.4e+02 Score=18.13 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHH
Q 043060 417 ADKALSLFSRMIGEGLQPDDITFV 440 (707)
Q Consensus 417 ~~~A~~~~~~m~~~g~~p~~~t~~ 440 (707)
++.|..+|++.+. +.|+..++.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 5566666666666 456655554
No 472
>PF15161 Neuropep_like: Neuropeptide-like
Probab=27.19 E-value=37 Score=23.28 Aligned_cols=17 Identities=24% Similarity=0.692 Sum_probs=11.9
Q ss_pred ccccccCchhHHHHHHhh
Q 043060 662 KNLRVCGNCHSATKLISK 679 (707)
Q Consensus 662 ~~~~~c~~~~~~~~~~s~ 679 (707)
-.-|-|.|||.+. |+.+
T Consensus 11 aesRPCVDCHAFe-fmqR 27 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQR 27 (65)
T ss_pred CCCCCchhhHHHH-HHHH
Confidence 3457899999765 6553
No 473
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.05 E-value=9.6e+02 Score=27.80 Aligned_cols=131 Identities=15% Similarity=0.149 Sum_probs=87.0
Q ss_pred hHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHH
Q 043060 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457 (707)
Q Consensus 378 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 457 (707)
.....+|+++.|++.-.++. |...|..|+..-..+|+.+-|...|++... |..|--.|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 34567899999988876654 556899999999999999999999988765 2233334556788877766
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 043060 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 458 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
+.+-+..+ .|... ....-.-.|+.++=.++++..+..|- .|. .-..+|.-++|.++.++.-.
T Consensus 720 m~~iae~r----~D~~~---~~qnalYl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 720 MMKIAEIR----NDATG---QFQNALYLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHhh----hhhHH---HHHHHHHhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 65544321 22211 11111235888888899988875542 221 12457878888888887765
No 474
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=26.75 E-value=5.1e+02 Score=27.10 Aligned_cols=61 Identities=15% Similarity=0.062 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGE------GLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMI 463 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~ 463 (707)
+.-.+++.++-.||+..|++.++.+--. .+.+-.+ +|-.+.-+|...+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677778888888887654211 1222222 55566667777788888888777653
No 475
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=26.64 E-value=6.2e+02 Score=24.84 Aligned_cols=137 Identities=14% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-------HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 043060 407 MISGLAMHGKADKALSLFSRMIGEGLQPD-------DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479 (707)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 479 (707)
+.+-..+.+++++|+..|.+....|+..| ..|...+...|...|+...-.+......+ .+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre-------------~m 75 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSRE-------------AM 75 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHH-------------HH
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHH
Q 043060 480 DLLGRAGLFDEAEALLKTMEMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVA 558 (707)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 558 (707)
.-+.+..-..-...+++..+..|| ..----++.+| ++-|.+--+.+++. ..-.-++.++.+.|++.+|.
T Consensus 76 ~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~-----iewA~rEkr~fLr~-----~Le~Kli~l~y~~~~Ysdal 145 (421)
T COG5159 76 EDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTAL-----IEWADREKRKFLRL-----ELECKLIYLLYKTGKYSDAL 145 (421)
T ss_pred HHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHH-----HHHHHHHHHHHHHH-----HHHHHHHHHHHhcccHHHHH
Q ss_pred HHHHHHhh
Q 043060 559 TIRTRLND 566 (707)
Q Consensus 559 ~~~~~m~~ 566 (707)
.+..-+..
T Consensus 146 alIn~ll~ 153 (421)
T COG5159 146 ALINPLLH 153 (421)
T ss_pred HHHHHHHH
No 476
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=26.48 E-value=2.9e+02 Score=23.96 Aligned_cols=29 Identities=17% Similarity=0.099 Sum_probs=12.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 043060 407 MISGLAMHGKADKALSLFSRMIGEGLQPD 435 (707)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 435 (707)
++..+.+.++.-.|.++|+++.+.+...+
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~is 54 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGIS 54 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCC
Confidence 33444444444444455555544433333
No 477
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.62 E-value=8.4e+02 Score=26.04 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcCCCCh----------hhHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCCChhh-------HHhHHH-HH
Q 043060 284 LVKARDLFESIEKRDV----------ISWNVMIGGYTHTSDYKEALMLFRQMLQSN-IEPNDVT-------FLSVLP-AC 344 (707)
Q Consensus 284 ~~~A~~~~~~~~~~~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t-------~~~ll~-~~ 344 (707)
.|+|+...++.++.|. .....++.+-.-.|++.+|++-..+|.+.- -.|.... ...++. -|
T Consensus 298 tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys 377 (629)
T KOG2300|consen 298 TDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS 377 (629)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh
Confidence 4556666666665551 123333444456899999999999998753 2233111 112222 23
Q ss_pred hccCCchHHHHHHHHHHHhCCCCCcHHH--HhHHhhHHHhcCCHHHHHHHHhcCCCCCh
Q 043060 345 AYLGALDLGKWIHAYIDKNHQKLNNVSL--WTSLIDMYAKCGNIKAAEQVFDGMGYKTL 401 (707)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 401 (707)
...+.++.|+.-|....+.-... +... -..+.-.|.+.|+.++-.++++.+..++.
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~~~-dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt 435 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTESI-DLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNT 435 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhhHH-HHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCC
Confidence 45566777776666665543332 3322 23455567777777777777777665543
No 478
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.40 E-value=2.6e+02 Score=25.04 Aligned_cols=60 Identities=10% Similarity=0.018 Sum_probs=30.8
Q ss_pred HHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHH
Q 043060 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489 (707)
Q Consensus 428 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 489 (707)
.+.|+++...-. .++......+..-.|.++++.+.+. +...+..|.---++.+.+.|-+.
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEE
Confidence 344555444322 2333333334455666677766554 44445544444556677777653
No 479
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=25.29 E-value=3.8e+02 Score=24.80 Aligned_cols=62 Identities=13% Similarity=0.128 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHH-HHHhhhcCChhhHHHHHHHHhh
Q 043060 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL-SNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 505 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
...+.++..|...||++.|.++|--++...+-|....-.+ +.++.+.+.-....+.++.|..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
Confidence 3455666677777777777777777776554443332222 3344444444444466665543
No 480
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=25.13 E-value=6.9e+02 Score=24.88 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=51.0
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH----------cCCHHH
Q 043060 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR----------AGLFDE 490 (707)
Q Consensus 421 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----------~g~~~~ 490 (707)
.++|+.|.+.++.|.-..|.-+.-.+++.=.+.+...+++.+..+ ..-|..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 478888888889999888888777777777888888888887653 2224444444332 467777
Q ss_pred HHHHHHhCC
Q 043060 491 AEALLKTME 499 (707)
Q Consensus 491 A~~~~~~~~ 499 (707)
-.++++.-+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 777776643
No 481
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=24.84 E-value=5.5e+02 Score=23.59 Aligned_cols=56 Identities=13% Similarity=0.179 Sum_probs=31.4
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHcCC--------------CchhHHHHHHHHHHHhcCCHHHHHHHHH
Q 043060 237 VTVLSACAHMGSLELGNWVCSLIEGHGL--------------GSNLHVTNALIDMYSKCGDLVKARDLFE 292 (707)
Q Consensus 237 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~ 292 (707)
.+++..|-+..++.+++++++.+.+..+ .+.-.+.|.-+..+.+.|.+|.|..+++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 3555666666677777777776655422 1223344555555555555555555554
No 482
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=24.49 E-value=2.9e+02 Score=24.73 Aligned_cols=35 Identities=6% Similarity=0.044 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 043060 146 ISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180 (707)
Q Consensus 146 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 180 (707)
.-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 41 hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 41 AISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 33444455544444433333333333344444443
No 483
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=24.09 E-value=7.6e+02 Score=24.97 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=72.3
Q ss_pred HHHHHHHHhcC---CCCChHHHHHHHHHHH------HcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHH
Q 043060 386 IKAAEQVFDGM---GYKTLASWNAMISGLA------MHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIG 455 (707)
Q Consensus 386 ~~~A~~~~~~~---~~~~~~~~~~li~~~~------~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a 455 (707)
++++..++++. ..+.+....+.|.++- ..-++.....+|+-+.. +.|+.+ +.|-.+ +.++..-.+.+
T Consensus 272 I~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAV-Ala~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAV-ALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHH-HHHHhhhHHhH
Confidence 45555555543 2345555555555542 23467777788888877 677766 454433 44555567777
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 043060 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD 503 (707)
Q Consensus 456 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 503 (707)
+...+.+..+..+.--...+..-.+.+.+.|+.++|..-|++. ...++
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~ 397 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARN 397 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCC
Confidence 8777777654333333334556678899999999999999985 44433
No 484
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.09 E-value=1.2e+03 Score=27.13 Aligned_cols=133 Identities=14% Similarity=0.063 Sum_probs=64.0
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHH
Q 043060 238 TVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKE 317 (707)
Q Consensus 238 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 317 (707)
++-..+...|+.+....+-..+. .|..++..+...+.+++|++++..-..+. ..-...-.+ ....+.+
T Consensus 509 tv~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~~~~e--l~yk~ap~L-i~~~p~~ 576 (911)
T KOG2034|consen 509 TVYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQRNPE--LFYKYAPEL-ITHSPKE 576 (911)
T ss_pred HHHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhccchh--hHHHhhhHH-HhcCcHH
Confidence 33344445566665555444433 34567777888888888888887653322 111111111 1112222
Q ss_pred HHHHHHHHhhcCCCCChhhHHhHHHHHhccCC---chHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCH
Q 043060 318 ALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA---LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386 (707)
Q Consensus 318 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 386 (707)
....+..+.+ ..+..-...++..+.+.+. ...+....+.....-... ++.++|.++..|++..+-
T Consensus 577 tV~~wm~~~d---~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~-~~~ihn~ll~lya~~~~~ 644 (911)
T KOG2034|consen 577 TVSAWMAQKD---LDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMT-NPAIHNSLLHLYAKHERD 644 (911)
T ss_pred HHHHHHHccc---cCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCc-CHHHHHHHHHHhhcCCcc
Confidence 2222222221 1122223344444444422 233333444443333333 788889999988876543
No 485
>PRK02287 hypothetical protein; Provisional
Probab=23.97 E-value=4.9e+02 Score=23.35 Aligned_cols=57 Identities=18% Similarity=0.093 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHH
Q 043060 473 QHYGCMVDLLGRAGLFDEAEALLKTMEMKPD-AAIWTSLLGACRVHGRLELGESVAKH 529 (707)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~ 529 (707)
.+.-+++.++.-.|..++|.++++....-+. ...-..++..|.+..+-++-.++-++
T Consensus 108 s~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~ 165 (171)
T PRK02287 108 SSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKE 165 (171)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 3444555566666666666666666544333 22223455555555555544444333
No 486
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=23.72 E-value=4.9e+02 Score=22.64 Aligned_cols=77 Identities=14% Similarity=0.230 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC---------CCChhhHHHHHHHHHhcCC-HHHHHHHHHHHhhcCCCCChhhHHhHH
Q 043060 272 NALIDMYSKCGDLVKARDLFESIE---------KRDVISWNVMIGGYTHTSD-YKEALMLFRQMLQSNIEPNDVTFLSVL 341 (707)
Q Consensus 272 ~~li~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll 341 (707)
|.++.-....+++.....+++.+. ..+-.+|..++.+..+..- ---+..+|.-|.+.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444445544444444432 1345678888888865555 345677888888878888888888888
Q ss_pred HHHhccC
Q 043060 342 PACAYLG 348 (707)
Q Consensus 342 ~~~~~~~ 348 (707)
.+|.+..
T Consensus 123 ~~~l~g~ 129 (145)
T PF13762_consen 123 KAALRGY 129 (145)
T ss_pred HHHHcCC
Confidence 8877653
No 487
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=23.70 E-value=4.1e+02 Score=29.35 Aligned_cols=72 Identities=8% Similarity=0.125 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHhHHHHHHHHHhccCCHH------HHHHHHHHhHHhcCCCCChHHHHH
Q 043060 406 AMISGLAMHGKADKALSLFSRMIGE--GLQPDDITFVGVLSACNHAGLLD------IGRQYFNAMIQDYKISPKLQHYGC 477 (707)
Q Consensus 406 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~------~a~~~~~~~~~~~~~~p~~~~~~~ 477 (707)
++..+|..+|++..+.++++.+... |-+.-...|+..+....+.|.++ .+.+.++.. .+.-|..+|..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a----~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA----RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----hcCCcchHHHH
Confidence 6778888888888888888877753 22222235666666677776543 233333332 34456666665
Q ss_pred HHHH
Q 043060 478 MVDL 481 (707)
Q Consensus 478 li~~ 481 (707)
|+.+
T Consensus 109 l~~~ 112 (1117)
T COG5108 109 LCQA 112 (1117)
T ss_pred HHHh
Confidence 5543
No 488
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=23.63 E-value=25 Score=25.42 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=16.4
Q ss_pred eEEEecCCccccccCccccCC
Q 043060 684 EIIARDRNRFHHFKDGNCSCN 704 (707)
Q Consensus 684 ~~~~~~~~~~h~~~~g~~s~~ 704 (707)
.|=|.|.+..|+|+||+-+-+
T Consensus 9 si~LkDGstvyiFKDGKMamE 29 (73)
T PF11525_consen 9 SIPLKDGSTVYIFKDGKMAME 29 (73)
T ss_dssp EEEBTTSEEEEEETTS-EEEE
T ss_pred eEecCCCCEEEEEcCCceehh
Confidence 566889999999999986643
No 489
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.54 E-value=1.2e+03 Score=27.23 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=23.9
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHHhCc
Q 043060 197 VSYTALITGYASRGYLDDARQLFDEMP 223 (707)
Q Consensus 197 ~~~~~li~~~~~~g~~~~A~~l~~~m~ 223 (707)
.-|..|+..|...|+.++|++++.+..
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~ 531 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLV 531 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHh
Confidence 358899999999999999999999985
No 490
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=23.25 E-value=1.9e+02 Score=22.65 Aligned_cols=63 Identities=5% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCCchHH
Q 043060 46 IKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVA 114 (707)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 114 (707)
...+...+++.|+-.+...- ...+...+.+.+.++++-++.+...+|..+..++-..+...-|
T Consensus 22 ~~~v~~~L~~~gvlt~~~~~------~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~~La 84 (90)
T cd08332 22 LDELLIHLLQKDILTDSMAE------SIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQEHLC 84 (90)
T ss_pred HHHHHHHHHHcCCCCHHHHH------HHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChHHHH
No 491
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=23.11 E-value=1.2e+03 Score=27.01 Aligned_cols=24 Identities=13% Similarity=-0.013 Sum_probs=13.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHH
Q 043060 441 GVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 441 ~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
.|.......|++++|...++++..
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344455556666666666655544
No 492
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=23.07 E-value=3.5e+02 Score=20.87 Aligned_cols=61 Identities=13% Similarity=0.223 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHH
Q 043060 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEA 318 (707)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 318 (707)
.++..+.+.|+-. ....-...+...+.+.|.++++.++.++..+|..+..++...|...-|
T Consensus 20 ~v~~~L~~~~Vlt----~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 20 YLWDHLLSRGVFT----PDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHhcCCCC----HHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 4555555555322 122222334445677888888888888888888888887776655433
No 493
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=22.98 E-value=6.7e+02 Score=23.94 Aligned_cols=162 Identities=12% Similarity=0.102 Sum_probs=79.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh-ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc
Q 043060 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN-HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485 (707)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 485 (707)
++..+-+.|++++++..++++...+...+..--+.+-.+|- ..|....+++++..+..+..-..+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 55666778888888888888888655555544444444442 234445556666555443222212 2222222222211
Q ss_pred ------CCHHHHHHHHHhC--CC--CCCH-HHHHHHH-HHHH----------hcCChhHHHHHHHHHHc-----cCCCCc
Q 043060 486 ------GLFDEAEALLKTM--EM--KPDA-AIWTSLL-GACR----------VHGRLELGESVAKHLLE-----LEPENP 538 (707)
Q Consensus 486 ------g~~~~A~~~~~~~--~~--~p~~-~~~~~ll-~~~~----------~~g~~~~A~~~~~~~~~-----~~p~~~ 538 (707)
.--.+.+.+++.. +. .+.. +.|.-+- +.|+ +..-.+.|.+.|+++.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 1123444445442 11 1221 1222221 1111 11124677778887765 456665
Q ss_pred hhHHH---HHHH-hhhcCChhhHHHHHHHHhhCCC
Q 043060 539 GAYVL---LSNM-YAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 539 ~~~~~---l~~~-~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.-.-. .+.. |--.|+.++|.++-+...+..+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 43222 2222 4668999999999888776554
No 494
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=22.58 E-value=2.5e+02 Score=29.45 Aligned_cols=145 Identities=17% Similarity=0.230 Sum_probs=66.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCC---hhhHH-HHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhH--HhHHHHHhc
Q 043060 273 ALIDMYSKCGDLVKARDLFESIEKRD---VISWN-VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTF--LSVLPACAY 346 (707)
Q Consensus 273 ~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~ 346 (707)
.=+.+.|-.|+++-...+.+.=-+++ ..-.+ .||.+| .|..+ +-+.+.+.|..++..++ ++.+.-|+.
T Consensus 119 tPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~y--kGh~~----I~qyLle~gADvn~ks~kGNTALH~caE 192 (615)
T KOG0508|consen 119 TPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACY--KGHVD----IAQYLLEQGADVNAKSYKGNTALHDCAE 192 (615)
T ss_pred ccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeec--cCchH----HHHHHHHhCCCcchhcccCchHHHhhhh
Confidence 34444455555555555554322221 11111 233333 34333 33444556666666655 567777888
Q ss_pred cCCchHHHHHHHHHHHhCCCCCcH--HHHhHHhhHHHhcCCHHHHHHHHhcCCCC--ChHHHHHHHHHHHHc-CCHHHHH
Q 043060 347 LGALDLGKWIHAYIDKNHQKLNNV--SLWTSLIDMYAKCGNIKAAEQVFDGMGYK--TLASWNAMISGLAMH-GKADKAL 421 (707)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~-g~~~~A~ 421 (707)
.|.++-.+.+. +.|... +. .-.+-|+ .....|..+....+.+.+..+ -+.....+...|... .|.-.|+
T Consensus 193 sG~vdivq~Ll----~~ga~i-~~d~~GmtPL~-~Aa~tG~~~iVe~L~~~~~sr~~riealEllGat~~dkk~D~~~al 266 (615)
T KOG0508|consen 193 SGSVDIVQLLL----KHGAKI-DVDGHGMTPLL-LAAVTGHTDIVERLLQCETSRESRIEALELLGATYVDKKRDLLGAL 266 (615)
T ss_pred cccHHHHHHHH----hCCcee-eecCCCCchHH-HHhhhcchHHHHHHhcCCcchhhHHHHHHHhcccccchhHHHHHHH
Confidence 88876544443 332221 11 1111122 223455555555555433322 122333344444432 2355666
Q ss_pred HHHHHHHH
Q 043060 422 SLFSRMIG 429 (707)
Q Consensus 422 ~~~~~m~~ 429 (707)
..|.+..+
T Consensus 267 ~~w~~aMe 274 (615)
T KOG0508|consen 267 KYWRRAME 274 (615)
T ss_pred HHHHHHHH
Confidence 66665443
No 495
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.55 E-value=3.3e+02 Score=23.65 Aligned_cols=45 Identities=7% Similarity=0.054 Sum_probs=21.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 043060 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180 (707)
Q Consensus 136 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 180 (707)
++..+...++.-.|..+++.+.+.+..-+..|--.-++.+...|-
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 344444444445555666655555544444333333444555443
No 496
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=22.50 E-value=4.7e+02 Score=25.10 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=27.4
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCC----CCChHHHHHHHHHHHHcCCHHHHHHH
Q 043060 442 VLSACNHAGLLDIGRQYFNAMIQDYKI----SPKLQHYGCMVDLLGRAGLFDEAEAL 494 (707)
Q Consensus 442 ll~a~~~~g~~~~a~~~~~~~~~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~ 494 (707)
+..-|.+.|++++|..+|+.+...+.- .+.......+..++.+.|+.++.+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 344555666666666666655444332 22333444455555566666555443
No 497
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=22.46 E-value=6.5e+02 Score=23.59 Aligned_cols=19 Identities=11% Similarity=0.123 Sum_probs=9.0
Q ss_pred HHhcCChhHHHHHHHHHHc
Q 043060 514 CRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~ 532 (707)
..+.|+.++|.+.+.+++.
T Consensus 175 ~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 175 NRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHhCCHHHHHHHHHHHHc
Confidence 3444444444444444444
No 498
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=22.41 E-value=8.2e+02 Score=24.75 Aligned_cols=71 Identities=7% Similarity=0.069 Sum_probs=41.3
Q ss_pred hhHHHhcCCHHHHHHHHhcCC-------CCChHHH--HHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHh-HHHH
Q 043060 377 IDMYAKCGNIKAAEQVFDGMG-------YKTLASW--NAMISGLAMHGKADKALSLFSRMIG-----EGLQPDDI-TFVG 441 (707)
Q Consensus 377 i~~y~~~g~~~~A~~~~~~~~-------~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~-t~~~ 441 (707)
+...-+.++.++|.++++++. .|+.+.| ..++..+...||..++.+++.+... .|+.|+.. .|..
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ 161 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYS 161 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHH
Confidence 333444556666666666552 3344433 4455666677888888777777666 56666554 4555
Q ss_pred HHHHHh
Q 043060 442 VLSACN 447 (707)
Q Consensus 442 ll~a~~ 447 (707)
+-+-|.
T Consensus 162 lssqYy 167 (380)
T KOG2908|consen 162 LSSQYY 167 (380)
T ss_pred HHHHHH
Confidence 544443
No 499
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=22.20 E-value=8.9e+02 Score=25.10 Aligned_cols=28 Identities=7% Similarity=-0.171 Sum_probs=17.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 043060 409 SGLAMHGKADKALSLFSRMIGEGLQPDD 436 (707)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 436 (707)
..+.+.+++..|.++|+++.+....|+.
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~ 165 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVN 165 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhh
Confidence 3455667777777777777765444443
No 500
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=21.45 E-value=1e+03 Score=25.49 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=35.1
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHH
Q 043060 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563 (707)
Q Consensus 512 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 563 (707)
.++....++..+++-.+.+....-+.+.....-++.+...|++.+|.+++..
T Consensus 214 r~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~ 265 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLV 265 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHh
Confidence 3444445555555555555555555666777778889999999999887654
Done!