Query 043060
Match_columns 707
No_of_seqs 837 out of 5086
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 21:54:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 6.4E-44 2.2E-48 397.3 38.3 484 72-569 61-581 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.6E-39 8.7E-44 360.2 29.6 480 59-550 81-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.9E-26 1E-30 240.1 38.7 371 136-553 5-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-25 6.3E-30 234.0 38.3 353 203-568 6-369 (388)
5 4g26_A Pentatricopeptide repea 99.9 2.8E-26 9.6E-31 244.5 22.7 183 300-484 27-222 (501)
6 4g26_A Pentatricopeptide repea 99.9 1E-26 3.4E-31 247.9 17.7 211 113-347 8-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 3.7E-23 1.3E-27 225.1 34.2 437 97-544 8-489 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 6.3E-22 2.2E-26 211.5 34.5 335 195-563 25-405 (450)
9 2gw1_A Mitochondrial precursor 99.9 1.6E-22 5.5E-27 220.0 30.2 427 131-569 7-480 (514)
10 3fp2_A TPR repeat-containing p 99.9 7.5E-23 2.6E-27 224.1 27.6 432 95-540 25-498 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 2.3E-21 7.9E-26 207.1 35.0 366 162-557 23-444 (450)
12 3fp2_A TPR repeat-containing p 99.9 4.5E-21 1.5E-25 209.9 33.2 422 131-569 26-493 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 2.9E-18 1E-22 176.6 36.0 305 233-568 3-336 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 2.7E-18 9.2E-23 176.9 33.6 324 195-551 2-353 (359)
15 3hym_B Cell division cycle pro 99.8 5.3E-18 1.8E-22 172.6 30.1 286 265-555 19-322 (330)
16 2ooe_A Cleavage stimulation fa 99.8 1E-16 3.5E-21 174.7 39.6 394 164-568 12-493 (530)
17 3hym_B Cell division cycle pro 99.8 4.3E-17 1.5E-21 165.8 29.2 265 297-568 20-300 (330)
18 2xm6_A Protein corresponding t 99.8 4.3E-16 1.5E-20 168.0 38.6 365 164-550 38-452 (490)
19 1fch_A Peroxisomal targeting s 99.8 1.2E-17 4.1E-22 173.0 24.5 279 279-564 36-356 (368)
20 1xi4_A Clathrin heavy chain; a 99.8 9E-15 3.1E-19 164.8 48.7 382 129-559 984-1376(1630)
21 1b89_A Protein (clathrin heavy 99.8 8.1E-18 2.8E-22 170.6 21.8 344 177-562 15-367 (449)
22 1b89_A Protein (clathrin heavy 99.8 2.1E-16 7.3E-21 160.2 31.9 281 75-423 14-304 (449)
23 3mkr_A Coatomer subunit epsilo 99.8 5E-17 1.7E-21 161.6 25.4 267 279-559 10-286 (291)
24 2ooe_A Cleavage stimulation fa 99.8 2.2E-15 7.4E-20 164.2 36.6 405 94-536 12-495 (530)
25 4eqf_A PEX5-related protein; a 99.8 2.7E-17 9.3E-22 170.2 20.4 259 298-563 64-352 (365)
26 1fch_A Peroxisomal targeting s 99.8 1.6E-16 5.4E-21 164.5 25.8 299 207-532 36-358 (368)
27 2xm6_A Protein corresponding t 99.7 9.8E-15 3.4E-19 157.3 39.7 352 194-569 37-434 (490)
28 4g1t_A Interferon-induced prot 99.7 2.5E-15 8.7E-20 161.2 33.0 369 165-578 51-470 (472)
29 4eqf_A PEX5-related protein; a 99.7 7.6E-17 2.6E-21 166.8 20.3 232 333-568 64-311 (365)
30 1xi4_A Clathrin heavy chain; a 99.7 2.9E-13 1E-17 152.7 49.0 402 98-552 988-1415(1630)
31 3cv0_A Peroxisome targeting si 99.7 2.1E-16 7.3E-21 160.4 21.4 272 269-565 22-313 (327)
32 3mkr_A Coatomer subunit epsilo 99.7 1.2E-15 4E-20 151.7 25.2 248 306-569 6-266 (291)
33 4g1t_A Interferon-induced prot 99.7 1.5E-14 5.2E-19 155.2 28.6 341 167-545 96-471 (472)
34 3cv0_A Peroxisome targeting si 99.7 3.2E-15 1.1E-19 151.6 20.7 274 232-535 20-317 (327)
35 2pl2_A Hypothetical conserved 99.6 1.4E-14 4.7E-19 137.4 19.9 192 369-564 4-211 (217)
36 3spa_A Mtrpol, DNA-directed RN 99.6 3E-16 1E-20 171.4 9.4 129 369-498 126-262 (1134)
37 3uq3_A Heat shock protein STI1 99.6 1.8E-14 6.1E-19 140.5 19.6 155 402-567 80-236 (258)
38 3uq3_A Heat shock protein STI1 99.6 2.7E-14 9.3E-19 139.2 20.7 236 299-547 5-256 (258)
39 3spa_A Mtrpol, DNA-directed RN 99.6 1.5E-16 5.2E-21 173.7 4.0 151 58-210 123-286 (1134)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.4E-14 1.9E-18 138.7 20.8 241 311-561 17-269 (275)
41 3u4t_A TPR repeat-containing p 99.6 2.6E-13 8.8E-18 133.6 23.2 245 269-552 4-269 (272)
42 3e4b_A ALGK; tetratricopeptide 99.6 2.4E-13 8.1E-18 144.2 24.4 374 136-566 9-420 (452)
43 2h6f_A Protein farnesyltransfe 99.5 2.8E-13 9.7E-18 139.1 21.2 242 301-550 99-365 (382)
44 2ho1_A Type 4 fimbrial biogene 99.5 2.7E-12 9.2E-17 124.7 26.1 168 370-539 71-244 (252)
45 2ho1_A Type 4 fimbrial biogene 99.5 7.1E-13 2.4E-17 128.8 20.7 197 370-569 37-240 (252)
46 2h6f_A Protein farnesyltransfe 99.5 3.8E-13 1.3E-17 138.2 19.4 227 335-568 98-349 (382)
47 1ouv_A Conserved hypothetical 99.5 5.8E-12 2E-16 124.1 27.2 224 298-569 5-253 (273)
48 2vq2_A PILW, putative fimbrial 99.5 1.2E-12 4.2E-17 124.4 21.6 197 369-568 7-212 (225)
49 2q7f_A YRRB protein; TPR, prot 99.5 4E-13 1.4E-17 129.6 18.3 160 403-566 59-221 (243)
50 3vtx_A MAMA; tetratricopeptide 99.5 8.1E-13 2.8E-17 121.6 19.4 166 400-569 4-172 (184)
51 2q7f_A YRRB protein; TPR, prot 99.5 3.5E-13 1.2E-17 130.1 17.1 215 332-551 21-240 (243)
52 3u4t_A TPR repeat-containing p 99.5 2.7E-12 9.2E-17 126.2 23.1 227 233-464 3-249 (272)
53 2vq2_A PILW, putative fimbrial 99.5 4.3E-12 1.5E-16 120.6 23.5 207 299-544 8-222 (225)
54 1ouv_A Conserved hypothetical 99.5 6.9E-12 2.4E-16 123.5 24.9 224 267-537 5-255 (273)
55 3e4b_A ALGK; tetratricopeptide 99.5 6.3E-12 2.2E-16 133.3 26.1 343 202-569 9-389 (452)
56 2pl2_A Hypothetical conserved 99.5 3E-12 1E-16 121.2 20.7 110 415-529 98-210 (217)
57 4abn_A Tetratricopeptide repea 99.5 4.9E-13 1.7E-17 142.8 16.5 207 352-564 86-318 (474)
58 4e6h_A MRNA 3'-END-processing 99.5 3.4E-10 1.2E-14 124.0 39.0 415 93-538 64-575 (679)
59 3sf4_A G-protein-signaling mod 99.5 6.3E-13 2.2E-17 139.1 16.7 290 235-556 11-365 (406)
60 3sf4_A G-protein-signaling mod 99.5 1.7E-12 5.7E-17 135.9 19.7 199 369-567 86-336 (406)
61 4a1s_A PINS, partner of inscut 99.5 6.5E-13 2.2E-17 139.5 16.0 268 269-567 49-372 (411)
62 3ro2_A PINS homolog, G-protein 99.5 2.8E-12 9.5E-17 130.1 19.7 266 271-567 8-332 (338)
63 1xnf_A Lipoprotein NLPI; TPR, 99.4 4.1E-12 1.4E-16 125.1 18.9 216 302-527 46-269 (275)
64 4a1s_A PINS, partner of inscut 99.4 2.7E-12 9.4E-17 134.7 16.5 270 233-535 48-374 (411)
65 4gyw_A UDP-N-acetylglucosamine 99.4 4.2E-12 1.4E-16 140.9 18.4 163 400-566 8-173 (723)
66 3vtx_A MAMA; tetratricopeptide 99.4 7.7E-12 2.6E-16 114.9 17.2 166 369-538 4-175 (184)
67 3ro2_A PINS homolog, G-protein 99.4 8.4E-12 2.9E-16 126.5 18.2 270 235-536 7-335 (338)
68 4e6h_A MRNA 3'-END-processing 99.4 1.5E-09 5.2E-14 118.9 36.7 215 352-569 327-572 (679)
69 3ulq_A Response regulator aspa 99.4 4.4E-11 1.5E-15 124.2 23.6 230 274-533 109-368 (383)
70 2ond_A Cleavage stimulation fa 99.4 4.4E-11 1.5E-15 120.0 21.8 162 402-567 100-270 (308)
71 2ond_A Cleavage stimulation fa 99.3 3.7E-10 1.3E-14 113.2 27.0 216 316-538 33-275 (308)
72 3nf1_A KLC 1, kinesin light ch 99.3 6.4E-12 2.2E-16 126.1 13.2 55 512-566 252-306 (311)
73 3ulq_A Response regulator aspa 99.3 5.6E-11 1.9E-15 123.4 20.1 229 305-566 109-367 (383)
74 3as5_A MAMA; tetratricopeptide 99.3 7.3E-11 2.5E-15 108.0 17.3 161 405-568 12-174 (186)
75 1hz4_A MALT regulatory protein 99.3 1.2E-09 4.1E-14 112.8 28.1 196 372-567 95-322 (373)
76 4i17_A Hypothetical protein; T 99.3 1.9E-10 6.7E-15 109.6 20.0 203 333-548 6-224 (228)
77 4i17_A Hypothetical protein; T 99.3 1.1E-10 3.6E-15 111.5 17.8 189 369-568 6-210 (228)
78 4abn_A Tetratricopeptide repea 99.3 1.1E-10 3.9E-15 124.4 18.4 179 386-569 84-289 (474)
79 3q15_A PSP28, response regulat 99.3 1.6E-09 5.6E-14 112.0 26.3 163 403-566 184-364 (378)
80 3as5_A MAMA; tetratricopeptide 99.2 3.7E-10 1.3E-14 103.2 18.3 168 369-540 7-180 (186)
81 3nf1_A KLC 1, kinesin light ch 99.2 1E-10 3.4E-15 117.3 14.8 58 479-536 251-310 (311)
82 3q15_A PSP28, response regulat 99.2 8.4E-10 2.9E-14 114.2 21.9 306 228-534 5-366 (378)
83 4gyw_A UDP-N-acetylglucosamine 99.2 2.3E-10 7.9E-15 127.0 16.3 163 369-535 8-176 (723)
84 3qky_A Outer membrane assembly 99.2 1.3E-09 4.4E-14 106.3 18.8 203 369-613 14-247 (261)
85 3edt_B KLC 2, kinesin light ch 99.1 4.7E-10 1.6E-14 110.5 14.3 222 345-566 12-280 (283)
86 4ga2_A E3 SUMO-protein ligase 99.1 1.9E-10 6.4E-15 101.5 8.7 140 410-553 6-149 (150)
87 2yhc_A BAMD, UPF0169 lipoprote 99.1 6.7E-09 2.3E-13 98.6 19.9 182 369-570 3-216 (225)
88 1hz4_A MALT regulatory protein 99.1 2.2E-08 7.5E-13 103.2 24.8 165 371-535 136-324 (373)
89 1qqe_A Vesicular transport pro 99.1 2.9E-09 1E-13 105.6 16.7 211 283-537 32-273 (292)
90 3mv2_B Coatomer subunit epsilo 99.1 7.5E-08 2.6E-12 93.6 26.0 176 389-569 85-284 (310)
91 1qqe_A Vesicular transport pro 99.1 1.5E-09 5.3E-14 107.7 14.3 188 377-566 44-268 (292)
92 2pzi_A Probable serine/threoni 99.0 6.4E-09 2.2E-13 116.0 19.7 168 381-553 402-583 (681)
93 3edt_B KLC 2, kinesin light ch 99.0 5.3E-09 1.8E-13 102.8 16.7 165 369-533 84-281 (283)
94 2fo7_A Synthetic consensus TPR 99.0 5.6E-09 1.9E-13 89.5 14.1 125 442-568 7-133 (136)
95 3qou_A Protein YBBN; thioredox 99.0 5.2E-09 1.8E-13 103.5 15.6 175 386-565 102-282 (287)
96 3qky_A Outer membrane assembly 99.0 1.5E-08 5E-13 98.7 18.3 204 333-556 14-250 (261)
97 4ga2_A E3 SUMO-protein ligase 98.9 2.1E-09 7.1E-14 94.7 8.8 124 442-568 3-130 (150)
98 2fo7_A Synthetic consensus TPR 98.9 3.4E-08 1.2E-12 84.4 15.8 131 403-536 3-135 (136)
99 3mv2_B Coatomer subunit epsilo 98.9 1.7E-07 5.8E-12 91.1 21.5 241 278-541 23-290 (310)
100 2r5s_A Uncharacterized protein 98.9 7.4E-09 2.5E-13 94.0 11.4 77 490-566 92-172 (176)
101 2vsy_A XCC0866; transferase, g 98.9 1.2E-08 4E-13 111.9 14.8 159 383-545 2-169 (568)
102 3rjv_A Putative SEL1 repeat pr 98.9 9E-08 3.1E-12 89.7 18.4 172 389-569 5-199 (212)
103 2pzi_A Probable serine/threoni 98.9 3.4E-08 1.2E-12 110.2 18.0 189 345-540 402-609 (681)
104 2vsy_A XCC0866; transferase, g 98.9 7.7E-08 2.6E-12 105.3 20.0 145 348-498 3-154 (568)
105 4gco_A Protein STI-1; structur 98.9 2E-08 6.7E-13 85.3 11.8 108 438-547 15-124 (126)
106 3urz_A Uncharacterized protein 98.8 5.1E-08 1.8E-12 91.1 15.4 126 407-537 60-190 (208)
107 3gyz_A Chaperone protein IPGC; 98.8 1.5E-08 5E-13 88.8 10.8 103 467-569 30-135 (151)
108 3urz_A Uncharacterized protein 98.8 2.9E-08 9.9E-13 92.8 13.3 161 404-569 7-188 (208)
109 2vgx_A Chaperone SYCD; alterna 98.8 9.1E-09 3.1E-13 90.2 9.1 99 471-569 20-120 (148)
110 3dra_A Protein farnesyltransfe 98.8 4.8E-07 1.6E-11 89.0 22.2 209 352-566 51-286 (306)
111 2uy1_A Cleavage stimulation fa 98.8 3.8E-06 1.3E-10 89.3 28.0 366 107-531 6-411 (493)
112 3u3w_A Transcriptional activat 98.8 9.5E-07 3.3E-11 87.4 21.9 161 406-566 80-265 (293)
113 4gco_A Protein STI-1; structur 98.7 5.2E-08 1.8E-12 82.6 10.8 101 468-568 8-111 (126)
114 2ifu_A Gamma-SNAP; membrane fu 98.7 1.7E-07 5.7E-12 93.6 16.4 180 377-559 43-253 (307)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.4E-07 4.9E-12 88.3 14.8 125 440-569 10-152 (213)
116 2xcb_A PCRH, regulatory protei 98.7 9.9E-08 3.4E-12 82.9 12.3 98 471-568 17-116 (142)
117 2yhc_A BAMD, UPF0169 lipoprote 98.7 2.8E-07 9.7E-12 87.2 16.4 185 334-539 4-219 (225)
118 2ifu_A Gamma-SNAP; membrane fu 98.7 4.1E-08 1.4E-12 98.1 10.9 171 383-565 29-222 (307)
119 2qfc_A PLCR protein; TPR, HTH, 98.7 4.1E-07 1.4E-11 90.1 17.7 165 402-566 76-265 (293)
120 2r5s_A Uncharacterized protein 98.7 2.1E-07 7.3E-12 84.2 14.4 157 372-532 8-172 (176)
121 3dra_A Protein farnesyltransfe 98.7 4.4E-06 1.5E-10 82.1 24.6 225 315-547 49-302 (306)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.7 8E-07 2.7E-11 83.1 17.5 144 373-537 9-154 (213)
123 1a17_A Serine/threonine protei 98.7 2.6E-07 8.8E-12 82.4 13.3 126 439-566 16-145 (166)
124 3qou_A Protein YBBN; thioredox 98.7 6.7E-07 2.3E-11 88.2 17.1 116 345-464 128-247 (287)
125 2c2l_A CHIP, carboxy terminus 98.6 7.1E-08 2.4E-12 94.9 9.8 191 369-567 3-199 (281)
126 2e2e_A Formate-dependent nitri 98.6 1.7E-07 5.9E-12 84.9 11.7 121 447-569 21-146 (177)
127 2vyi_A SGTA protein; chaperone 98.6 3.5E-07 1.2E-11 77.6 12.4 116 438-555 14-131 (131)
128 1na0_A Designed protein CTPR3; 98.6 4.5E-07 1.5E-11 76.1 12.9 113 438-552 11-125 (125)
129 3rjv_A Putative SEL1 repeat pr 98.6 1.7E-06 6E-11 80.8 18.0 173 353-536 5-200 (212)
130 2lni_A Stress-induced-phosphop 98.6 3.3E-07 1.1E-11 78.1 11.2 112 440-553 20-133 (133)
131 4f3v_A ESX-1 secretion system 98.6 3.3E-07 1.1E-11 87.9 11.7 183 382-569 18-239 (282)
132 1p5q_A FKBP52, FK506-binding p 98.6 2.8E-07 9.6E-12 93.1 12.0 144 400-565 146-292 (336)
133 3upv_A Heat shock protein STI1 98.6 2.8E-07 9.6E-12 78.0 10.2 97 472-568 4-102 (126)
134 2vgx_A Chaperone SYCD; alterna 98.6 1.2E-07 4.1E-12 83.0 8.0 115 424-542 10-127 (148)
135 2uy1_A Cleavage stimulation fa 98.6 3.2E-05 1.1E-09 82.2 28.0 339 78-429 28-412 (493)
136 3gyz_A Chaperone protein IPGC; 98.6 3.6E-07 1.2E-11 79.9 10.7 105 432-538 31-138 (151)
137 4f3v_A ESX-1 secretion system 98.6 6.4E-07 2.2E-11 85.9 13.3 139 404-547 105-250 (282)
138 1hxi_A PEX5, peroxisome target 98.5 2.2E-07 7.7E-12 78.0 8.5 96 474-569 19-116 (121)
139 1wao_1 Serine/threonine protei 98.5 5.4E-07 1.9E-11 95.7 13.1 118 444-563 14-135 (477)
140 2fbn_A 70 kDa peptidylprolyl i 98.5 7.1E-08 2.4E-12 89.3 5.5 174 374-568 8-187 (198)
141 3sz7_A HSC70 cochaperone (SGT) 98.5 1.3E-06 4.4E-11 77.9 13.0 98 471-568 10-109 (164)
142 2kck_A TPR repeat; tetratricop 98.5 5.4E-07 1.8E-11 74.0 9.8 99 471-569 5-108 (112)
143 3q49_B STIP1 homology and U bo 98.5 9.8E-07 3.3E-11 75.8 11.4 99 470-568 7-107 (137)
144 2xcb_A PCRH, regulatory protei 98.5 2.9E-07 1E-11 79.9 8.0 106 438-545 20-127 (142)
145 3u3w_A Transcriptional activat 98.5 1.7E-05 5.8E-10 78.3 21.5 159 375-533 80-266 (293)
146 4gcn_A Protein STI-1; structur 98.5 5.2E-07 1.8E-11 76.5 9.1 94 473-566 9-111 (127)
147 1elw_A TPR1-domain of HOP; HOP 98.4 2.6E-06 8.9E-11 70.5 12.6 106 440-547 8-115 (118)
148 2e2e_A Formate-dependent nitri 98.4 8.1E-07 2.8E-11 80.3 10.2 126 412-541 21-152 (177)
149 3gw4_A Uncharacterized protein 98.4 4E-06 1.4E-10 77.5 15.1 155 382-565 4-174 (203)
150 2lni_A Stress-induced-phosphop 98.4 1.5E-06 5.2E-11 73.9 11.2 99 470-568 14-114 (133)
151 1wao_1 Serine/threonine protei 98.4 1.5E-06 5.2E-11 92.2 13.6 120 373-496 9-134 (477)
152 2qfc_A PLCR protein; TPR, HTH, 98.4 7.2E-06 2.5E-10 81.0 17.5 164 370-533 75-266 (293)
153 3upv_A Heat shock protein STI1 98.4 1.9E-06 6.6E-11 72.8 11.3 109 438-548 6-122 (126)
154 1elw_A TPR1-domain of HOP; HOP 98.4 1.7E-06 5.9E-11 71.6 10.8 99 471-569 3-103 (118)
155 3gw4_A Uncharacterized protein 98.4 4.9E-06 1.7E-10 76.8 15.0 117 448-566 4-135 (203)
156 3q7a_A Farnesyltransferase alp 98.4 2E-05 6.8E-10 78.2 19.9 193 370-566 88-330 (349)
157 1na0_A Designed protein CTPR3; 98.4 2.1E-06 7E-11 71.9 10.8 97 472-568 9-107 (125)
158 3rkv_A Putative peptidylprolyl 98.4 2.7E-06 9.3E-11 75.6 12.1 65 504-568 63-127 (162)
159 3sz7_A HSC70 cochaperone (SGT) 98.4 2.6E-06 8.7E-11 75.9 11.8 107 438-546 13-121 (164)
160 2dba_A Smooth muscle cell asso 98.3 7.5E-06 2.6E-10 71.0 14.0 78 473-550 66-145 (148)
161 2dba_A Smooth muscle cell asso 98.3 4E-06 1.4E-10 72.8 12.1 99 470-568 26-129 (148)
162 2c2l_A CHIP, carboxy terminus 98.3 4.6E-06 1.6E-10 81.8 13.8 181 343-534 13-200 (281)
163 2hr2_A Hypothetical protein; a 98.3 1.8E-06 6.2E-11 74.6 9.3 93 475-567 14-131 (159)
164 3dss_A Geranylgeranyl transfer 98.3 5.7E-05 1.9E-09 74.6 21.3 179 386-568 90-305 (331)
165 1a17_A Serine/threonine protei 98.3 7.7E-06 2.6E-10 72.6 13.8 127 402-532 14-145 (166)
166 2xev_A YBGF; tetratricopeptide 98.3 2.9E-06 1E-10 71.8 10.2 91 478-568 8-106 (129)
167 3q7a_A Farnesyltransferase alp 98.3 0.00017 5.8E-09 71.5 23.8 230 309-546 64-345 (349)
168 2vyi_A SGTA protein; chaperone 98.3 3.5E-06 1.2E-10 71.2 10.3 98 471-568 11-110 (131)
169 1p5q_A FKBP52, FK506-binding p 98.3 5.5E-06 1.9E-10 83.6 13.1 112 348-463 127-257 (336)
170 3q49_B STIP1 homology and U bo 98.3 4.5E-06 1.5E-10 71.5 10.4 99 436-536 9-109 (137)
171 3dss_A Geranylgeranyl transfer 98.2 0.00013 4.4E-09 72.0 21.5 192 350-548 90-319 (331)
172 3k9i_A BH0479 protein; putativ 98.2 9.4E-07 3.2E-11 73.6 5.2 84 484-567 2-90 (117)
173 1hxi_A PEX5, peroxisome target 98.2 6.2E-06 2.1E-10 69.0 9.5 98 439-538 20-119 (121)
174 2kck_A TPR repeat; tetratricop 98.2 9.9E-06 3.4E-10 66.2 10.6 99 438-538 8-111 (112)
175 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.1E-05 3.8E-10 85.1 13.5 145 400-566 267-414 (457)
176 2fbn_A 70 kDa peptidylprolyl i 98.2 2.3E-06 8E-11 79.0 7.2 146 341-492 11-176 (198)
177 1elr_A TPR2A-domain of HOP; HO 98.2 5.8E-06 2E-10 69.8 8.8 96 473-568 5-109 (131)
178 1dce_A Protein (RAB geranylger 98.1 9.7E-05 3.3E-09 79.8 20.0 167 386-556 45-244 (567)
179 4b4t_Q 26S proteasome regulato 98.1 2E-05 6.7E-10 82.7 14.3 164 403-566 57-244 (434)
180 4gcn_A Protein STI-1; structur 98.1 1.1E-05 3.7E-10 68.2 10.0 100 403-535 10-114 (127)
181 1elr_A TPR2A-domain of HOP; HO 98.1 7.7E-06 2.6E-10 69.0 9.2 105 442-549 10-123 (131)
182 3ro3_A PINS homolog, G-protein 98.1 1.5E-05 5E-10 70.2 10.6 93 474-566 51-157 (164)
183 2xev_A YBGF; tetratricopeptide 98.1 3.6E-05 1.2E-09 64.9 12.6 104 442-545 8-117 (129)
184 3n71_A Histone lysine methyltr 98.1 1.8E-05 6.1E-10 83.4 12.3 124 446-569 319-466 (490)
185 3ro3_A PINS homolog, G-protein 98.1 2.5E-05 8.6E-10 68.6 11.6 131 404-534 12-159 (164)
186 3rkv_A Putative peptidylprolyl 98.1 8.4E-06 2.9E-10 72.3 8.4 123 401-548 11-142 (162)
187 1ihg_A Cyclophilin 40; ppiase 98.1 1.8E-05 6.2E-10 80.7 11.6 137 401-559 223-362 (370)
188 2l6j_A TPR repeat-containing p 98.1 1.8E-06 6.2E-11 70.8 3.2 93 471-563 3-103 (111)
189 3k9i_A BH0479 protein; putativ 98.0 3.7E-06 1.3E-10 69.9 5.1 93 449-542 3-99 (117)
190 2if4_A ATFKBP42; FKBP-like, al 98.0 1E-05 3.5E-10 81.6 9.2 149 402-570 180-331 (338)
191 2if4_A ATFKBP42; FKBP-like, al 98.0 5.5E-06 1.9E-10 83.6 7.0 115 438-569 181-295 (338)
192 2hr2_A Hypothetical protein; a 98.0 1.3E-05 4.5E-10 69.2 7.8 115 403-543 13-141 (159)
193 4b4t_Q 26S proteasome regulato 98.0 7E-05 2.4E-09 78.5 14.9 158 409-566 12-203 (434)
194 1ihg_A Cyclophilin 40; ppiase 97.9 4.9E-05 1.7E-09 77.5 12.2 112 438-568 225-337 (370)
195 3ma5_A Tetratricopeptide repea 97.9 3.2E-05 1.1E-09 62.0 8.5 65 503-567 6-70 (100)
196 2kat_A Uncharacterized protein 97.9 2.5E-05 8.4E-10 64.5 7.8 78 490-567 3-82 (115)
197 1zu2_A Mitochondrial import re 97.9 6.8E-06 2.3E-10 70.8 4.2 87 483-569 13-122 (158)
198 1na3_A Designed protein CTPR2; 97.9 3.7E-05 1.3E-09 60.0 8.3 81 472-552 9-91 (91)
199 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.0001 3.5E-09 77.7 13.0 111 349-463 249-378 (457)
200 3n71_A Histone lysine methyltr 97.7 0.00014 4.9E-09 76.5 11.8 114 481-612 318-449 (490)
201 1zu2_A Mitochondrial import re 97.7 4.5E-05 1.5E-09 65.7 5.5 74 488-568 62-148 (158)
202 3qwp_A SET and MYND domain-con 97.7 0.00023 7.8E-09 73.8 11.8 116 479-612 294-427 (429)
203 1dce_A Protein (RAB geranylger 97.6 0.0005 1.7E-08 74.2 14.3 151 415-569 43-223 (567)
204 3bee_A Putative YFRE protein; 97.6 0.00027 9.3E-09 55.3 8.9 69 502-570 4-75 (93)
205 2l6j_A TPR repeat-containing p 97.6 0.00019 6.5E-09 58.3 7.9 67 503-569 3-69 (111)
206 2kat_A Uncharacterized protein 97.5 0.00033 1.1E-08 57.5 8.1 80 455-536 4-85 (115)
207 1klx_A Cysteine rich protein B 97.5 0.0011 3.7E-08 56.6 11.5 86 482-569 35-128 (138)
208 3qww_A SET and MYND domain-con 97.4 0.0004 1.4E-08 71.8 8.8 82 485-566 311-410 (433)
209 1na3_A Designed protein CTPR2; 97.3 0.00062 2.1E-08 52.8 7.9 65 504-568 9-73 (91)
210 1klx_A Cysteine rich protein B 97.3 0.0012 4.1E-08 56.3 10.1 113 414-535 8-128 (138)
211 3ly7_A Transcriptional activat 97.3 0.0039 1.3E-07 61.7 14.6 145 397-569 190-341 (372)
212 3qww_A SET and MYND domain-con 97.3 0.0015 5E-08 67.6 11.6 94 449-542 311-425 (433)
213 1pc2_A Mitochondria fission pr 97.2 0.0022 7.6E-08 54.5 10.3 90 502-617 30-124 (152)
214 3qwp_A SET and MYND domain-con 97.2 0.0027 9.2E-08 65.7 12.5 71 473-543 330-415 (429)
215 2kc7_A BFR218_protein; tetratr 97.1 0.0016 5.4E-08 51.5 8.1 79 478-564 6-87 (99)
216 3lvg_A Clathrin heavy chain 1; 97.1 0.00019 6.4E-09 72.3 2.8 433 61-560 53-534 (624)
217 3ma5_A Tetratricopeptide repea 97.1 0.0018 6.1E-08 51.5 8.2 63 400-464 6-69 (100)
218 2kc7_A BFR218_protein; tetratr 97.0 0.0014 4.8E-08 51.8 6.5 61 509-569 5-66 (99)
219 1wy6_A Hypothetical protein ST 96.9 0.039 1.3E-06 44.9 13.6 140 412-570 18-157 (172)
220 3mkq_A Coatomer beta'-subunit; 96.7 0.12 4.1E-06 58.6 22.4 154 204-395 607-761 (814)
221 3u64_A Protein TP_0956; tetrat 96.6 0.0075 2.5E-07 57.2 9.2 87 488-574 179-276 (301)
222 3ly7_A Transcriptional activat 96.6 0.02 6.7E-07 56.7 12.3 39 530-568 269-307 (372)
223 3bee_A Putative YFRE protein; 96.3 0.016 5.5E-07 45.0 8.3 69 469-537 3-76 (93)
224 3mkq_A Coatomer beta'-subunit; 96.3 0.087 3E-06 59.8 17.8 46 381-428 663-708 (814)
225 2v5f_A Prolyl 4-hydroxylase su 96.2 0.032 1.1E-06 44.5 9.8 73 472-544 5-86 (104)
226 3mkq_B Coatomer subunit alpha; 96.0 0.15 5.2E-06 44.4 13.3 129 378-530 13-141 (177)
227 1pc2_A Mitochondria fission pr 95.9 0.033 1.1E-06 47.3 8.4 88 452-541 14-108 (152)
228 1nzn_A CGI-135 protein, fissio 95.8 0.043 1.5E-06 44.8 8.6 65 502-566 33-102 (126)
229 3mkq_B Coatomer subunit alpha; 95.6 0.88 3E-05 39.6 16.6 128 277-427 14-141 (177)
230 1qsa_A Protein (soluble lytic 95.5 3.4 0.00012 44.4 30.1 254 268-532 72-347 (618)
231 1y8m_A FIS1; mitochondria, unk 95.3 0.43 1.5E-05 39.6 12.9 91 501-617 36-130 (144)
232 2v5f_A Prolyl 4-hydroxylase su 94.8 0.097 3.3E-06 41.6 7.7 67 503-569 4-77 (104)
233 3lvg_A Clathrin heavy chain 1; 93.9 0.0054 1.9E-07 61.9 -1.9 238 164-422 53-325 (624)
234 1nzn_A CGI-135 protein, fissio 93.6 0.57 1.9E-05 38.2 9.8 90 451-542 16-112 (126)
235 3u64_A Protein TP_0956; tetrat 93.6 0.47 1.6E-05 45.0 10.6 111 382-497 133-265 (301)
236 4h7y_A Dual specificity protei 93.2 0.3 1E-05 40.9 7.5 53 517-569 73-125 (161)
237 4gns_B Protein CSD3, chitin bi 93.0 0.79 2.7E-05 50.3 12.8 55 511-565 344-398 (754)
238 3o48_A Mitochondria fission 1 92.9 0.51 1.7E-05 38.6 8.4 65 502-566 38-106 (134)
239 4h7y_A Dual specificity protei 92.5 0.96 3.3E-05 37.9 9.6 111 397-541 9-131 (161)
240 4ady_A RPN2, 26S proteasome re 91.9 19 0.00065 40.4 26.9 255 243-507 384-664 (963)
241 4ady_A RPN2, 26S proteasome re 89.9 29 0.00099 39.0 29.7 251 276-531 382-656 (963)
242 2qx5_A Nucleoporin NIC96; mRNA 88.8 12 0.0004 40.4 16.7 82 304-397 299-383 (661)
243 3lpz_A GET4 (YOR164C homolog); 88.6 19 0.00064 35.0 19.5 168 372-566 37-215 (336)
244 1wy6_A Hypothetical protein ST 88.4 9.3 0.00032 31.3 14.8 136 381-535 18-156 (172)
245 3ffl_A Anaphase-promoting comp 87.8 3.3 0.00011 35.4 9.2 26 438-463 65-90 (167)
246 3ffl_A Anaphase-promoting comp 87.6 2.2 7.4E-05 36.5 8.0 26 539-564 123-148 (167)
247 2p58_C Putative type III secre 87.3 8.3 0.00028 29.5 10.2 86 248-338 22-107 (116)
248 2wpv_A GET4, UPF0363 protein Y 86.9 23 0.00078 34.1 22.6 170 270-465 35-217 (312)
249 2ff4_A Probable regulatory pro 86.8 1.6 5.4E-05 44.2 8.2 67 507-573 174-245 (388)
250 2uwj_G Type III export protein 86.3 7.9 0.00027 29.5 9.3 86 248-338 21-106 (115)
251 4gns_B Protein CSD3, chitin bi 84.2 3.3 0.00011 45.4 9.6 50 411-462 347-397 (754)
252 3lpz_A GET4 (YOR164C homolog); 84.0 32 0.0011 33.3 22.8 168 271-464 38-215 (336)
253 3txn_A 26S proteasome regulato 83.5 39 0.0013 33.8 16.5 160 372-532 21-209 (394)
254 4b4t_P 26S proteasome regulato 83.3 34 0.0012 35.0 16.4 185 312-498 29-244 (445)
255 2wpv_A GET4, UPF0363 protein Y 83.1 34 0.0012 32.9 18.6 131 168-311 36-177 (312)
256 3o48_A Mitochondria fission 1 83.1 8.8 0.0003 31.4 9.2 71 470-540 38-114 (134)
257 1y8m_A FIS1; mitochondria, unk 82.4 16 0.00056 30.2 10.7 72 469-540 36-113 (144)
258 1v54_E Cytochrome C oxidase po 79.7 8 0.00027 29.7 7.2 63 416-480 25-87 (109)
259 1zbp_A Hypothetical protein VP 77.4 16 0.00055 34.0 10.2 51 446-498 7-57 (273)
260 2ff4_A Probable regulatory pro 76.8 17 0.00057 36.6 11.3 68 405-474 175-247 (388)
261 4fhn_B Nucleoporin NUP120; pro 76.7 18 0.00062 42.3 13.2 163 169-351 816-988 (1139)
262 1v54_E Cytochrome C oxidase po 75.3 12 0.00042 28.7 7.2 63 314-378 25-87 (109)
263 4fhn_B Nucleoporin NUP120; pro 74.7 18 0.00062 42.3 12.4 65 506-570 901-970 (1139)
264 4b4t_P 26S proteasome regulato 73.6 83 0.0029 32.0 21.7 195 282-496 30-262 (445)
265 1zbp_A Hypothetical protein VP 71.6 4.2 0.00014 37.9 4.8 59 480-538 5-65 (273)
266 1wdy_A 2-5A-dependent ribonucl 70.8 49 0.0017 30.7 12.8 206 74-292 12-240 (285)
267 2y69_E Cytochrome C oxidase su 70.1 17 0.00058 29.6 7.2 62 417-480 69-130 (152)
268 3mv2_A Coatomer subunit alpha; 68.9 49 0.0017 31.7 11.5 60 495-568 196-257 (325)
269 1qsa_A Protein (soluble lytic 67.9 1.3E+02 0.0045 32.1 36.0 364 167-558 74-470 (618)
270 4b4t_R RPN7, 26S proteasome re 66.5 29 0.00098 35.4 10.4 91 474-564 133-234 (429)
271 2uwj_G Type III export protein 65.1 44 0.0015 25.6 8.5 76 143-222 19-94 (115)
272 3ltm_A Alpha-REP4; protein eng 65.0 73 0.0025 28.1 16.8 9 318-326 175-183 (211)
273 2p58_C Putative type III secre 64.2 47 0.0016 25.5 9.1 76 143-222 20-95 (116)
274 2y69_E Cytochrome C oxidase su 64.1 35 0.0012 27.9 7.9 60 113-173 71-130 (152)
275 3esl_A Checkpoint serine/threo 61.0 88 0.003 27.6 13.2 88 504-617 80-169 (202)
276 4b4t_R RPN7, 26S proteasome re 60.1 67 0.0023 32.6 11.8 58 406-463 136-195 (429)
277 3ltj_A Alpharep-4; protein eng 60.0 87 0.003 27.3 19.3 153 163-326 26-178 (201)
278 3ltm_A Alpha-REP4; protein eng 52.8 1.2E+02 0.0041 26.6 18.8 17 333-349 156-172 (211)
279 1k1a_A B-cell lymphoma 3-encod 48.2 1.5E+02 0.0051 26.4 11.4 15 278-292 157-171 (241)
280 4a1g_A Mitotic checkpoint seri 46.6 1.1E+02 0.0039 25.5 8.8 49 521-569 82-132 (152)
281 3ltj_A Alpharep-4; protein eng 46.1 1.5E+02 0.005 25.7 19.8 79 267-349 27-105 (201)
282 3esl_A Checkpoint serine/threo 45.0 1.3E+02 0.0046 26.4 9.4 59 247-305 93-152 (202)
283 4a1g_A Mitotic checkpoint seri 44.3 1.4E+02 0.0048 25.0 9.1 60 147-206 82-142 (152)
284 2nsz_A Programmed cell death p 44.3 73 0.0025 25.8 7.2 64 373-436 10-78 (129)
285 2wvi_A Mitotic checkpoint seri 41.2 1.5E+02 0.0051 25.2 8.8 59 505-569 67-127 (164)
286 3jxi_A Vanilloid receptor-rela 40.2 44 0.0015 30.7 6.3 117 104-220 11-161 (260)
287 2qx5_A Nucleoporin NIC96; mRNA 39.2 3.9E+02 0.013 28.7 20.0 32 472-503 533-569 (661)
288 1n11_A Ankyrin; clathrin, BAND 37.1 1.9E+02 0.0066 28.8 11.1 19 483-502 352-370 (437)
289 2d2s_A Exocyst complex compone 35.9 59 0.002 29.7 6.0 20 203-222 25-44 (235)
290 3txn_A 26S proteasome regulato 35.3 3.4E+02 0.012 26.9 26.3 88 469-569 253-345 (394)
291 2ion_A PDCD4, programmed cell 35.3 70 0.0024 26.9 5.9 63 373-435 12-79 (152)
292 4gq2_M Nucleoporin NUP120; bet 35.2 3.3E+02 0.011 30.9 13.3 91 442-538 816-932 (950)
293 3bqo_A Telomeric repeat-bindin 34.9 1.7E+02 0.0057 25.7 8.0 60 488-547 94-160 (211)
294 2nsz_A Programmed cell death p 34.8 1.8E+02 0.0061 23.4 8.4 62 271-332 10-76 (129)
295 1wdy_A 2-5A-dependent ribonucl 34.3 2.7E+02 0.0092 25.3 12.8 47 347-394 192-240 (285)
296 2zu6_B Programmed cell death p 34.2 3E+02 0.01 26.2 10.8 55 168-222 6-64 (307)
297 3eiq_C Programmed cell death p 34.1 2.8E+02 0.0097 27.1 10.8 184 200-387 58-305 (358)
298 2l0z_A Glycoprotein G2; zinc-b 32.8 14 0.00048 22.6 0.8 10 697-706 20-29 (42)
299 3mkr_B Coatomer subunit alpha; 32.4 1.1E+02 0.0037 29.3 7.2 60 495-568 187-248 (320)
300 2d2s_A Exocyst complex compone 30.4 1.4E+02 0.0048 27.2 7.6 87 407-497 24-116 (235)
301 3i5p_A Nucleoporin NUP170; hel 29.9 2.9E+02 0.01 28.6 10.6 68 501-568 175-247 (525)
302 4gq2_M Nucleoporin NUP120; bet 29.8 4.2E+02 0.014 30.1 13.0 127 171-313 816-950 (950)
303 1oyz_A Hypothetical protein YI 29.6 3.3E+02 0.011 24.9 20.8 9 420-428 253-261 (280)
304 1n11_A Ankyrin; clathrin, BAND 29.5 4.3E+02 0.015 26.2 14.0 18 174-191 119-136 (437)
305 4aez_C MAD3, mitotic spindle c 29.3 73 0.0025 28.7 5.2 49 521-569 131-181 (223)
306 1k1a_A B-cell lymphoma 3-encod 29.3 1.8E+02 0.006 25.9 8.4 20 244-263 17-36 (241)
307 4b4t_S RPN3, 26S proteasome re 28.3 3E+02 0.01 28.4 10.2 62 504-567 231-299 (523)
308 1oyz_A Hypothetical protein YI 28.0 3.5E+02 0.012 24.7 22.1 61 470-534 204-264 (280)
309 2pk8_A Uncharacterized protein 27.9 26 0.0009 26.0 1.7 31 594-624 12-42 (103)
310 1ya0_A SMG-7 transcript varian 27.0 1.3E+02 0.0045 31.1 7.4 76 475-550 155-232 (497)
311 3ygs_P Procaspase 9; apoptosis 25.6 97 0.0033 23.5 4.7 39 282-320 51-89 (97)
312 2ion_A PDCD4, programmed cell 25.5 1.2E+02 0.0039 25.5 5.6 24 199-222 12-35 (152)
313 3hra_A Ankyrin repeat family p 25.1 2.7E+02 0.0093 23.7 8.6 15 253-267 158-172 (201)
314 3kea_A K1L; tropism, ANK repea 25.0 2.5E+02 0.0087 26.0 8.8 14 279-292 137-150 (285)
315 3ygs_P Procaspase 9; apoptosis 25.0 65 0.0022 24.5 3.6 38 78-115 51-88 (97)
316 3kea_A K1L; tropism, ANK repea 24.6 3.6E+02 0.012 24.9 9.9 22 239-260 164-185 (285)
317 3b7b_A Euchromatic histone-lys 24.2 1.8E+02 0.0063 25.7 7.5 16 175-190 84-99 (237)
318 2rfa_A Transient receptor pote 23.5 2.2E+02 0.0075 25.1 7.8 25 240-264 158-182 (232)
319 2wvi_A Mitotic checkpoint seri 23.0 1.2E+02 0.0042 25.7 5.2 24 411-434 106-129 (164)
320 4b4t_S RPN3, 26S proteasome re 22.9 2.1E+02 0.0073 29.5 7.9 61 438-498 233-296 (523)
321 2zu6_B Programmed cell death p 22.9 4.9E+02 0.017 24.7 13.3 66 404-471 169-236 (307)
322 3eu9_A Huntingtin-interacting 22.3 2E+02 0.0068 25.4 7.3 212 115-331 22-239 (240)
323 2pnn_A Transient receptor pote 21.8 3.3E+02 0.011 24.7 9.0 124 94-220 10-169 (273)
324 3bu8_A Telomeric repeat-bindin 21.1 4.1E+02 0.014 23.7 8.1 69 452-520 88-163 (235)
325 3ljn_A Hypothetical protein; a 21.0 2.4E+02 0.0082 27.2 8.1 18 277-294 59-76 (364)
326 3re2_A Predicted protein; meni 20.7 4.6E+02 0.016 25.5 8.9 83 470-557 294-394 (472)
327 2lo3_A SAGA-associated factor 20.7 22 0.00076 21.9 0.1 12 663-674 16-27 (44)
328 2fe3_A Peroxide operon regulat 20.6 1.8E+02 0.0063 23.9 6.0 63 425-489 11-73 (145)
329 2etb_A Transient receptor pote 20.6 1.8E+02 0.006 26.4 6.6 115 104-220 8-157 (256)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.4e-44 Score=397.32 Aligned_cols=484 Identities=11% Similarity=0.016 Sum_probs=403.8
Q ss_pred hcccCCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHH
Q 043060 72 CAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151 (707)
Q Consensus 72 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 151 (707)
..+.++|.+..+...|+.++.+++..|+.++..+.+.|++++|+.+|++|.. ..||..++..++.+|.+.|++++|..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 4567788999999999999999999999999999999999999999999985 46788999999999999999999999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCC-------------------CeehHHHHHHHHHhCCCh
Q 043060 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-------------------DAVSYTALITGYASRGYL 212 (707)
Q Consensus 152 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~~g~~ 212 (707)
+++.+... +++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99988644 688999999999999999999999999965443 378999999999999999
Q ss_pred hHHHHHHHhCccccCCCCCCH-hhHHHHHHHHhccCCchH--HHHH-HHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHH
Q 043060 213 DDARQLFDEMPIREENFVPNE-STVVTVLSACAHMGSLEL--GNWV-CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288 (707)
Q Consensus 213 ~~A~~l~~~m~~~~~~~~p~~-~t~~~ll~~~~~~g~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 288 (707)
++|+++|++|.. ..|+. ..+..+...+...+..+. +..+ +..+...+......+++.++.+|.+.|++++|.
T Consensus 217 ~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 292 (597)
T 2xpi_A 217 DRAKECYKEALM----VDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE 292 (597)
T ss_dssp HHHHHHHHHHHH----HCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHH----hCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 999999999963 33543 334444433332222111 1111 444454555556677888899999999999999
Q ss_pred HHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCC
Q 043060 289 DLFESIEK--RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK 366 (707)
Q Consensus 289 ~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 366 (707)
++|+++.+ ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++...|+.++|..++..+.+..+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 371 (597)
T 2xpi_A 293 DYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371 (597)
T ss_dssp HHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc
Confidence 99999987 799999999999999999999999999999865 337788999999999999999999999999987665
Q ss_pred CCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 043060 367 LNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443 (707)
Q Consensus 367 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 443 (707)
+..+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++
T Consensus 372 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 448 (597)
T 2xpi_A 372 --KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLG 448 (597)
T ss_dssp --SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHH
T ss_pred --cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHH
Confidence 88999999999999999999999999873 4578899999999999999999999999999842 34667999999
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHH
Q 043060 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-------EMKPD--AAIWTSLLGAC 514 (707)
Q Consensus 444 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~ 514 (707)
.+|.+.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 9999999999999999999874 3457889999999999999999999999987 45787 78999999999
Q ss_pred HhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.+.|++++|.+.++++++.+|+++.+|..++.+|.+.|++++|.++++++.+...
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999987544
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-39 Score=360.20 Aligned_cols=480 Identities=10% Similarity=0.023 Sum_probs=410.2
Q ss_pred CCchhhhhhhchhhcccCCCChHHHHHHHhcCC--CCCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHH
Q 043060 59 HNTQFALSKLIEICAVSPFGDLSYALLVFETIR--EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136 (707)
Q Consensus 59 ~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 136 (707)
.+++..++.++ ..|.+.|++++|..+|+++. .||..+|+.++.+|.+.|++++|+.+|+++... +++..+++.+
T Consensus 81 ~~~~~~~~~~~--~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 81 LSREDYLRLWR--HDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp -CHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 36788899999 99999999999999999986 378899999999999999999999999998653 6788999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHh---------------CCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCC---Ceeh
Q 043060 137 LKSCAKISAISEGKQIHAHVLKL---------------GLESDPFVHTSLINMYAQNGELESARLVFNKSSLR---DAVS 198 (707)
Q Consensus 137 l~~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~ 198 (707)
+.++.+.|++++|.++|+++... |.+.+..+++.++.+|.+.|++++|.++|+++... +...
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence 99999999999999999853211 22335789999999999999999999999988643 4455
Q ss_pred HHHHHHHHHhCCChhHHHHH---HHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHH
Q 043060 199 YTALITGYASRGYLDDARQL---FDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALI 275 (707)
Q Consensus 199 ~~~li~~~~~~g~~~~A~~l---~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 275 (707)
|..+...+...+..+.+... +..+.. .+..++..+|..++..|.+.|++++|.++++.+.+. +++..+++.++
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSK--EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHG--GGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCccccc--chHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence 66565555444333222211 333321 344455566777788899999999999999998876 58899999999
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchH
Q 043060 276 DMYSKCGDLVKARDLFESIEK---RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL 352 (707)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 352 (707)
.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..++..+...+.+.|++++
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999863 477899999999999999999999999998653 4567889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043060 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIG 429 (707)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (707)
|.++++.+.+..+. +..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+
T Consensus 392 A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQ--FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999987765 78899999999999999999999999873 45788999999999999999999999999998
Q ss_pred CCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-
Q 043060 430 EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY---KISPK--LQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP- 502 (707)
Q Consensus 430 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p- 502 (707)
.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ ...|
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 42 3356799999999999999999999999997643 55777 789999999999999999999999997 4445
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhh
Q 043060 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAG 550 (707)
Q Consensus 503 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 550 (707)
+..+|..++.+|...|++++|.+.++++++++|+++.++..|+++|..
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999999998864
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.9e-26 Score=240.13 Aligned_cols=371 Identities=14% Similarity=0.160 Sum_probs=281.5
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCC---CCCeehHHHHHHHHHhCCCh
Q 043060 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS---LRDAVSYTALITGYASRGYL 212 (707)
Q Consensus 136 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 212 (707)
+...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++... ..+..+|..+...|.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 3455677888999999888888774 4445667777778888888888888887543 33667788888888888888
Q ss_pred hHHHHHHHhCccccCCCCCC-HhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHH
Q 043060 213 DDARQLFDEMPIREENFVPN-ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLF 291 (707)
Q Consensus 213 ~~A~~l~~~m~~~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 291 (707)
++|++.|+++.. ..|+ ..++..+..++...|++++|...+..+.+.. +.+..++..+...|...|++++|.+.|
T Consensus 84 ~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 84 QEAIEHYRHALR----LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 888888888742 3344 3457777777777788888887777777663 334455666666677777777777776
Q ss_pred HhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCC
Q 043060 292 ESIEK---RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN 368 (707)
Q Consensus 292 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 368 (707)
+++.+ .+..+|+.+...|.+.|++++|+..|+++.+. ++.
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----------------------------------~p~-- 201 (388)
T 1w3b_A 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----------------------------------DPN-- 201 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----------------------------------CTT--
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------------------------------CCC--
Confidence 66542 24456666666666666666666666666553 222
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcC---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGM---GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD-DITFVGVLS 444 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 444 (707)
+...+..+...+...|++++|...|++. ...+..+|..+...|...|++++|++.|+++.+ ..|+ ..++..+..
T Consensus 202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 279 (388)
T 1w3b_A 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLAN 279 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHH
Confidence 4555666777777777777777777654 234567788888888888889999999998888 4555 457888888
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 043060 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLEL 522 (707)
Q Consensus 445 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 522 (707)
++.+.|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...|+ ..+|..++..+.+.|++++
T Consensus 280 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 357 (388)
T 1w3b_A 280 ALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 899999999999999988873 4567788999999999999999999999986 55665 7889999999999999999
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHhhhcCC
Q 043060 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGR 553 (707)
Q Consensus 523 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 553 (707)
|...+++++++.|+++.+|..++.++...|+
T Consensus 358 A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 358 ALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999999999887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.8e-25 Score=234.02 Aligned_cols=353 Identities=16% Similarity=0.161 Sum_probs=301.8
Q ss_pred HHHHHhCCChhHHHHHHHhCccccCCCCCC-HhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhc
Q 043060 203 ITGYASRGYLDDARQLFDEMPIREENFVPN-ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC 281 (707)
Q Consensus 203 i~~~~~~g~~~~A~~l~~~m~~~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 281 (707)
...+.+.|++++|++.+.++.. ..|+ ...+..+...+...|+++.|...+....+.. +.+..++..+...|.+.
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWR----QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC
Confidence 4556778888888888888742 3444 3445556666778888999988888888764 55778899999999999
Q ss_pred CCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChh-hHHhHHHHHhccCCchHHHHHH
Q 043060 282 GDLVKARDLFESIEK---RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV-TFLSVLPACAYLGALDLGKWIH 357 (707)
Q Consensus 282 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~ 357 (707)
|++++|...|+++.+ .+..+|..+..++.+.|++++|++.|+++.+. .|+.. .+..+...+...|++++|...+
T Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 999999999998753 35567999999999999999999999999875 35444 4556667788889999999999
Q ss_pred HHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 043060 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434 (707)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 434 (707)
..+.+..+. +..++..+...|.+.|++++|...|+++. ..+...|..+...+...|++++|+..|++... ..|
T Consensus 159 ~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p 234 (388)
T 1w3b_A 159 LKAIETQPN--FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSP 234 (388)
T ss_dssp HHHHHHCTT--CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCT
T ss_pred HHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCc
Confidence 999988766 78899999999999999999999999874 44677899999999999999999999999998 567
Q ss_pred C-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 043060 435 D-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLL 511 (707)
Q Consensus 435 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 511 (707)
+ ..++..+..++...|++++|...|+.+.+ ..+.+...|..++.+|.+.|++++|.+.++++ ...| +..+|..+.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 312 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHH
Confidence 5 45888999999999999999999999986 33346788999999999999999999999997 3344 588999999
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 512 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
..+...|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+..
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999998743
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=2.8e-26 Score=244.47 Aligned_cols=183 Identities=15% Similarity=0.159 Sum_probs=154.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCC---------chHHHHHHHHHHHhCCCCCcH
Q 043060 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA---------LDLGKWIHAYIDKNHQKLNNV 370 (707)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 370 (707)
..++.+|.+|++.|+.++|+++|++|.+.|++||..||+++|.+|+..+. ++.|.++|+.|.+.|..| |.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-d~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-NE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-CH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-CH
Confidence 35677788888888888888888888888888888888888888876654 467888888888888876 88
Q ss_pred HHHhHHhhHHHhcCCHHHHHHHHhcCC----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 043060 371 SLWTSLIDMYAKCGNIKAAEQVFDGMG----YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446 (707)
Q Consensus 371 ~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 446 (707)
.+|++||.+|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++|+.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 888888888888888888888888874 4688889999999999999999999999999999999999999999999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH
Q 043060 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484 (707)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 484 (707)
++.|++++|.++|++|.+. +..|+..||+.+++.|..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred hhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 9999999999999998765 888999999988888765
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=1e-26 Score=247.95 Aligned_cols=211 Identities=11% Similarity=0.108 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHCCCCCCcc-cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcC
Q 043060 113 VAIKFYVRMILSGFVPNTY-TFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKS 191 (707)
Q Consensus 113 ~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~ 191 (707)
.+..+.+++.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+..+++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 4555667777776655443 57888999999999999999999999999999999999999998887754322
Q ss_pred CCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHH
Q 043060 192 SLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271 (707)
Q Consensus 192 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 271 (707)
.+.+..++|.++|++|.. .|+.||..||+++|.+|++.|+++.|.++++.|.+.|+.||..+|
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~--~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 143 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIV--DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY 143 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee
Confidence 234557889999999954 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhcc
Q 043060 272 NALIDMYSKCGDLVKARDLFESIE----KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347 (707)
Q Consensus 272 ~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 347 (707)
++||.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..++..
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999996 4799999999999999999999999999999999999999999999988754
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.7e-23 Score=225.09 Aligned_cols=437 Identities=12% Similarity=0.005 Sum_probs=263.2
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 043060 97 IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYA 176 (707)
Q Consensus 97 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 176 (707)
.|......+.+.|++++|+..|+++.+.. ||..++..+..++...|++++|.+.++.+++.. +.+..++..+...|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45666777888888888888888888764 677888888888888888888888888888775 445677888888888
Q ss_pred hCCChhHHHHHHhcCCC---CCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHH
Q 043060 177 QNGELESARLVFNKSSL---RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253 (707)
Q Consensus 177 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 253 (707)
+.|++++|...|+++.. .+......++..+........+.+.+..+.. .+..|+...+..-..............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDT--ATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------CCCCHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhccCChhhHHHhhccCCchhH
Confidence 88888888888876542 2333444444444433333333333322210 111111111111100000111111111
Q ss_pred HHHHHHHHcCC---------CchhHHHHHHHHHHHh---cCCHHHHHHHHHhcCC----------------C-ChhhHHH
Q 043060 254 WVCSLIEGHGL---------GSNLHVTNALIDMYSK---CGDLVKARDLFESIEK----------------R-DVISWNV 304 (707)
Q Consensus 254 ~~~~~~~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~ 304 (707)
.+...+..... +.+...+..+...+.. .|++++|...|+++.+ + +..+|..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 11111111100 2234444444444443 6777777777776544 1 2446677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcC
Q 043060 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384 (707)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 384 (707)
+...+...|++++|+..|+++.+.. |+...+..+...+...|+++.|...+..+.+..+. +..++..+...|...|
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN--NSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT--CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC--CHHHHHHHHHHHHHhC
Confidence 7777778888888888888777654 33556666667777777777777777777766554 5556677777777777
Q ss_pred CHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHH
Q 043060 385 NIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFN 460 (707)
Q Consensus 385 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~ 460 (707)
++++|...|+++. ..+...|..+...|...|++++|+..|+++.+ ..| +..++..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777776542 33556677777777777777777777777766 333 33466666667777777777777777
Q ss_pred HhHHhcCCCCC----hHHHHHHHHHHHH---cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043060 461 AMIQDYKISPK----LQHYGCMVDLLGR---AGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLL 531 (707)
Q Consensus 461 ~~~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 531 (707)
.+.+...-.++ ...+..+...|.+ .|++++|.+.++++ ...|+ ..+|..+...+...|++++|...+++++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 66553222222 3366666777777 77777777777664 33343 5666677777777777777777777777
Q ss_pred ccCCCCchhHHHH
Q 043060 532 ELEPENPGAYVLL 544 (707)
Q Consensus 532 ~~~p~~~~~~~~l 544 (707)
+++|+++..+..+
T Consensus 477 ~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 477 DLARTMEEKLQAI 489 (514)
T ss_dssp HHCSSHHHHHHHH
T ss_pred HhccccHHHHHHH
Confidence 7777666555544
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=6.3e-22 Score=211.48 Aligned_cols=335 Identities=13% Similarity=0.038 Sum_probs=229.7
Q ss_pred CeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHH
Q 043060 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274 (707)
Q Consensus 195 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 274 (707)
+...|..+...+.+.|++++|+.+|+++.. ..+.+..++..+..++...|++++|...+..+++.+ +.+..++..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVD---GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 344555556666666666666666665532 112234444555555555555555555555555443 2234444444
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCC---h---hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccC
Q 043060 275 IDMYSKCGDLVKARDLFESIEKRD---V---ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348 (707)
Q Consensus 275 i~~~~~~g~~~~A~~~~~~~~~~~---~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 348 (707)
..+|.+.|++++|...|+++.+.+ . ..|..++..+... .+......+...|
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcC
Confidence 555555555555555554443321 1 3333332221100 0111123355667
Q ss_pred CchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 043060 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFS 425 (707)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 425 (707)
+++.|...+..+.+..+. +..++..++.+|.+.|++++|.+.|+++. ..+..+|..++..|...|++++|+..|+
T Consensus 158 ~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVCVW--DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777777776654 67788888888999999999988888764 3577889999999999999999999999
Q ss_pred HHHHCCCCCCHhH-HHHH------------HHHHhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHHcCC
Q 043060 426 RMIGEGLQPDDIT-FVGV------------LSACNHAGLLDIGRQYFNAMIQDYKISPK-----LQHYGCMVDLLGRAGL 487 (707)
Q Consensus 426 ~m~~~g~~p~~~t-~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~ 487 (707)
++.+ ..|+... +..+ ...|.+.|++++|...|+.+.+. .|+ ..+|..++.+|.+.|+
T Consensus 236 ~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 236 ECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp HHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCC
Confidence 9987 5666553 3333 78899999999999999999874 343 4578899999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHH------------HHhhhcC-
Q 043060 488 FDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS------------NMYAGAG- 552 (707)
Q Consensus 488 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g- 552 (707)
+++|++.++++ ...| +..+|..++.+|...|++++|...++++++++|+++.++..++ +.|...|
T Consensus 311 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 99999999986 5556 4899999999999999999999999999999999999999998 5576667
Q ss_pred ----ChhhHHHHHHH
Q 043060 553 ----RWDDVATIRTR 563 (707)
Q Consensus 553 ----~~~~a~~~~~~ 563 (707)
+.+++.+.+++
T Consensus 391 ~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRK 405 (450)
T ss_dssp STTCCTTHHHHHHHH
T ss_pred CccCCHHHHHHHHHH
Confidence 45566666665
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.6e-22 Score=220.05 Aligned_cols=427 Identities=10% Similarity=0.001 Sum_probs=319.5
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCC---CCCeehHHHHHHHHH
Q 043060 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS---LRDAVSYTALITGYA 207 (707)
Q Consensus 131 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~ 207 (707)
..+......+.+.|++++|...++.+++.. |+..++..+...|.+.|++++|...|+++. ..+..+|..+...|.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 345566677889999999999999999986 689999999999999999999999998764 346778999999999
Q ss_pred hCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHH---HHHHHHhcCCH
Q 043060 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA---LIDMYSKCGDL 284 (707)
Q Consensus 208 ~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~---li~~~~~~g~~ 284 (707)
+.|++++|+..|+++.. .+ +++......++..+........+.+.+..+...+..|+...... ...........
T Consensus 85 ~~g~~~~A~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSL--NG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HTTCHHHHHHHHHHHHH--SS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHhhHHHHHHHHHHHHh--cC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 99999999999999864 22 23444444444444333322233222222221111111111000 00111111122
Q ss_pred HHHHHHHHhcCC---------C-ChhhHHHHHHHHHh---cCCHHHHHHHHHHHhh-----cCCCC--------ChhhHH
Q 043060 285 VKARDLFESIEK---------R-DVISWNVMIGGYTH---TSDYKEALMLFRQMLQ-----SNIEP--------NDVTFL 338 (707)
Q Consensus 285 ~~A~~~~~~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~ 338 (707)
..+...+..... + +...|......+.. .|++++|+..|+++.+ ....| +..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 222222222221 1 24445555555554 8999999999999987 31122 345667
Q ss_pred hHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcC
Q 043060 339 SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHG 415 (707)
Q Consensus 339 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 415 (707)
.+...+...|+++.|...+..+.+..+. ..++..+...|...|++++|.+.|+++. ..+...|..+...|...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR---VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc---HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhC
Confidence 7778889999999999999999998754 7788999999999999999999999864 346778999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 043060 416 KADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494 (707)
Q Consensus 416 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 494 (707)
++++|+..|+++.+. .|+ ..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.
T Consensus 319 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 319 NYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp CTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999984 454 458888999999999999999999999874 334667889999999999999999999
Q ss_pred HHhC----CCCCC----HHHHHHHHHHHHh---cCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHH
Q 043060 495 LKTM----EMKPD----AAIWTSLLGACRV---HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563 (707)
Q Consensus 495 ~~~~----~~~p~----~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 563 (707)
++++ +..|+ ..+|..+...+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|.+.+++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9986 22222 4489999999999 99999999999999999999999999999999999999999999999
Q ss_pred HhhCCC
Q 043060 564 LNDKGM 569 (707)
Q Consensus 564 m~~~~~ 569 (707)
..+...
T Consensus 475 a~~~~~ 480 (514)
T 2gw1_A 475 SADLAR 480 (514)
T ss_dssp HHHHCS
T ss_pred HHHhcc
Confidence 987544
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=7.5e-23 Score=224.07 Aligned_cols=432 Identities=12% Similarity=0.049 Sum_probs=280.0
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 043060 95 QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINM 174 (707)
Q Consensus 95 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 174 (707)
...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.++.+++.. +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567888889999999999999999999864 4467788899999999999999999999999886 5567889999999
Q ss_pred HHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCcccc----CCCCCCHhhHHHHHHHHhccCCch
Q 043060 175 YAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE----ENFVPNESTVVTVLSACAHMGSLE 250 (707)
Q Consensus 175 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~----~~~~p~~~t~~~ll~~~~~~g~~~ 250 (707)
|...|++++|...|+.+ ..+....+..+..+...+...+|+..++++.... ....|+...+.. +....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HHHhcChH
Confidence 99999999999999744 2333333444556666777788999999885421 122334333333 22233333
Q ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhc--------CCHHHHHHHHHhcCCCC----------hhhHHHHHHHHHhc
Q 043060 251 LGNWVCSLIEGHGLGSNLHVTNALIDMYSKC--------GDLVKARDLFESIEKRD----------VISWNVMIGGYTHT 312 (707)
Q Consensus 251 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~----------~~~~~~li~~~~~~ 312 (707)
.+...+...... -.........+...+... |++++|..+|+++.+.+ ..+|..+...+...
T Consensus 178 ~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNY-DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSS-CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcccc-ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhc
Confidence 222211111100 011112333333333322 46788888888776532 12466666777788
Q ss_pred CCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHH
Q 043060 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392 (707)
Q Consensus 313 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 392 (707)
|++++|+..|+++.+. .|+...+..+...+...|+++.|...+..+.+..+. +..++..+...|...|++++|.+.
T Consensus 257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE--YPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8888888888888775 355666777777777888888888888888777665 666777777777777888877777
Q ss_pred HhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 043060 393 FDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468 (707)
Q Consensus 393 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 468 (707)
|+++. ..+...|..+...|...|++++|+..|+++.+ ..|+ ...+..+...+...|++++|...|+.+.+....
T Consensus 333 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL--KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 77652 33556777777777777777777777777776 3344 336666777777777777777777776553211
Q ss_pred CC----ChHHHHHHHHHHHHc----------CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 043060 469 SP----KLQHYGCMVDLLGRA----------GLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 469 ~p----~~~~~~~li~~~~~~----------g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
.+ ....+..+...|.+. |++++|...++++ ...|+ ..+|..+...+...|++++|...++++++
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 112233444556666 7777777777665 33343 56667777777777777777777777777
Q ss_pred cCCCCchh
Q 043060 533 LEPENPGA 540 (707)
Q Consensus 533 ~~p~~~~~ 540 (707)
+.|.++..
T Consensus 491 ~~~~~~~~ 498 (537)
T 3fp2_A 491 LARTMDEK 498 (537)
T ss_dssp HC--CHHH
T ss_pred hCCCcHHH
Confidence 77665544
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=2.3e-21 Score=207.11 Aligned_cols=366 Identities=12% Similarity=0.025 Sum_probs=262.5
Q ss_pred CCChhHHHHHHHHHHhCCChhHHHHHHhcCC---CCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHH
Q 043060 162 ESDPFVHTSLINMYAQNGELESARLVFNKSS---LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVT 238 (707)
Q Consensus 162 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ 238 (707)
+.+...+..+...|.+.|++++|..+|+++. ..+..+|..+...|...|++++|+..|+++... -+.+...+..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 99 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL---KMDFTAARLQ 99 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCcHHHHHH
Confidence 4567789999999999999999999999765 347889999999999999999999999999642 1235678889
Q ss_pred HHHHHhccCCchHHHHHHHHHHHcCCCchh---HHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 043060 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNL---HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315 (707)
Q Consensus 239 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 315 (707)
+...+...|++++|...+..+.+.. +.+. ..+..++..+...+ +..+...+.+.|++
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-------------------~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQR-------------------LRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHcCCH
Confidence 9999999999999999999999864 3344 66666655532211 22233445556666
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhc
Q 043060 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395 (707)
Q Consensus 316 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 395 (707)
++|+..|+++.+.. +.+...+..+...+...|+++.|...+..+.+..+. +..++..++.+|.+.|++++|...|++
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND--NTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666666665532 224455555666666666666666666666665444 566677777777777777777777766
Q ss_pred CC---CCChHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----hHHHHHHHHHhccCCHHHH
Q 043060 396 MG---YKTLASWNAM------------ISGLAMHGKADKALSLFSRMIGEGLQPDD-----ITFVGVLSACNHAGLLDIG 455 (707)
Q Consensus 396 ~~---~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a 455 (707)
+. ..+...|..+ +..+...|++++|+..|+++.+ ..|+. ..+..+..++.+.|++++|
T Consensus 237 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 237 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 52 2234444444 7888899999999999999988 56663 3677788889999999999
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC---
Q 043060 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGA------------CRVHG--- 518 (707)
Q Consensus 456 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~------------~~~~g--- 518 (707)
...++.+.+. .+.+...|..+..+|...|++++|.+.++++ ...|+ ..++..+..+ |...|
T Consensus 315 ~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~ 392 (450)
T 2y4t_A 315 IRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392 (450)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSST
T ss_pred HHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCc
Confidence 9999988763 3346788889999999999999999999986 66676 6666666633 33334
Q ss_pred --ChhHHHHHHHH-HHccCCCCch----------hHHHHHHHhhhcCChhhH
Q 043060 519 --RLELGESVAKH-LLELEPENPG----------AYVLLSNMYAGAGRWDDV 557 (707)
Q Consensus 519 --~~~~A~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~a 557 (707)
+.+++.+.+++ +++..|++.. .+..+..+|...|+.++.
T Consensus 393 ~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 393 NAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp TCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 56778888886 6777775321 444555566555555443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=4.5e-21 Score=209.88 Aligned_cols=422 Identities=11% Similarity=0.047 Sum_probs=324.9
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCC---CCCeehHHHHHHHHH
Q 043060 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS---LRDAVSYTALITGYA 207 (707)
Q Consensus 131 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~ 207 (707)
..+..+...+.+.|++++|...++.+++.. +.++.++..+...|.+.|++++|.+.|+++. ..+..+|..+...+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 456677788889999999999999999886 5678899999999999999999999999764 347788999999999
Q ss_pred hCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcC--CCchhHHHHHHHHHHHhcCCHH
Q 043060 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG--LGSNLHVTNALIDMYSKCGDLV 285 (707)
Q Consensus 208 ~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~ 285 (707)
..|++++|++.|+.+. ..|+... ..+..+...+....+...+..+.+.. ..+........+..|....+.+
T Consensus 105 ~~g~~~~A~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLS-----LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHTCHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HcCCHHHHHHHHHHHh-----cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 9999999999997542 2222211 11223334444566777777775531 0111112234455566778888
Q ss_pred HHHHHHHhcCCCChh---hHHHHHHHHHhc--------CCHHHHHHHHHHHhhcCCCCCh--------hhHHhHHHHHhc
Q 043060 286 KARDLFESIEKRDVI---SWNVMIGGYTHT--------SDYKEALMLFRQMLQSNIEPND--------VTFLSVLPACAY 346 (707)
Q Consensus 286 ~A~~~~~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~--------~t~~~ll~~~~~ 346 (707)
.+...+......+.. .+..+...+... |++++|+.+|+++.+.. |+. .++..+...+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHh
Confidence 888877776655443 344444333332 47899999999998753 442 245566677888
Q ss_pred cCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHH
Q 043060 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSL 423 (707)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 423 (707)
.|+++.|...+..+.+..+ +..++..+...|...|++++|.+.|+++. ..+..+|..+...|...|++++|+..
T Consensus 256 ~~~~~~A~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHP---TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCC---CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCC---CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999999765 46788899999999999999999999763 45778999999999999999999999
Q ss_pred HHHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC----
Q 043060 424 FSRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM---- 498 (707)
Q Consensus 424 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---- 498 (707)
|+++.+ ..|+ ..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++
T Consensus 333 ~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 333 FQKAQS--LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHH--HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 999998 4554 458888999999999999999999999874 3446778899999999999999999999986
Q ss_pred CCCC----CHHHHHHHHHHHHhc----------CChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHH
Q 043060 499 EMKP----DAAIWTSLLGACRVH----------GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564 (707)
Q Consensus 499 ~~~p----~~~~~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 564 (707)
+..+ ....+..+...+... |++++|...++++++.+|+++.++..++.+|.+.|++++|.+.+++.
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1111 233355566777777 99999999999999999999999999999999999999999999999
Q ss_pred hhCCC
Q 043060 565 NDKGM 569 (707)
Q Consensus 565 ~~~~~ 569 (707)
.+...
T Consensus 489 l~~~~ 493 (537)
T 3fp2_A 489 AILAR 493 (537)
T ss_dssp HHHC-
T ss_pred HHhCC
Confidence 87554
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=2.9e-18 Score=176.65 Aligned_cols=305 Identities=11% Similarity=0.036 Sum_probs=209.2
Q ss_pred HhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHH
Q 043060 233 ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK---RDVISWNVMIGGY 309 (707)
Q Consensus 233 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 309 (707)
...+..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4456666777777888888888888777764 34566777777788888888888888777653 3556777777778
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCC---Ch-hhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCC
Q 043060 310 THTSDYKEALMLFRQMLQSNIEP---ND-VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385 (707)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~g~~p---~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 385 (707)
...|++++|+..|+++.+. .| +. ..+..+.... ....+..+...+...|+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~------------------------~~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD------------------------EMQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHTTC
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH------------------------HHHHHHHHHHHHHHccC
Confidence 8888888888888877764 34 22 1221111000 11112333566667777
Q ss_pred HHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHH
Q 043060 386 IKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFNA 461 (707)
Q Consensus 386 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~ 461 (707)
+++|.+.|+++. ..+...|..+...+...|++++|+..++++.+. .| +..++..+...+...|++++|...|+.
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777776652 345566777777777777777777777777763 33 344666677777777777777777777
Q ss_pred hHHhcCCCCChHHHH------------HHHHHHHHcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCChhHH
Q 043060 462 MIQDYKISPKLQHYG------------CMVDLLGRAGLFDEAEALLKTM-EMKPD-A----AIWTSLLGACRVHGRLELG 523 (707)
Q Consensus 462 ~~~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~ll~~~~~~g~~~~A 523 (707)
+.+.. +.+...+. .+...+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++|
T Consensus 214 a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 214 CLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 66531 12222222 2366688889999999988886 33444 2 2355677888889999999
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 524 ESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 524 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
...++++++.+|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999899999999999999999999999999888643
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=2.7e-18 Score=176.90 Aligned_cols=324 Identities=11% Similarity=-0.012 Sum_probs=244.2
Q ss_pred CeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHH
Q 043060 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274 (707)
Q Consensus 195 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 274 (707)
|+..|..+...+...|++++|+..|+++... .+.+..++..+...+...|+++.|...+..+.+.. +.+..++..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 77 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG---DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHH
Confidence 3456888899999999999999999999632 22356788889999999999999999999999874 4467889999
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccC
Q 043060 275 IDMYSKCGDLVKARDLFESIEKRDV------ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348 (707)
Q Consensus 275 i~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 348 (707)
..+|.+.|++++|...|++..+.++ ..+..+...+. ...+......+...|
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 9999999999999999999875433 23333321100 001122233444555
Q ss_pred CchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 043060 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFS 425 (707)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 425 (707)
+++.|...+..+.+..+. +..++..+...|...|++++|...|+++. ..+...|..+...|...|++++|+..|+
T Consensus 135 ~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVCVW--DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555555555443 56677778888888888888888887653 3466788888888888888888888888
Q ss_pred HHHHCCCCCCHhH-HH------------HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh----HHHHHHHHHHHHcCCH
Q 043060 426 RMIGEGLQPDDIT-FV------------GVLSACNHAGLLDIGRQYFNAMIQDYKISPKL----QHYGCMVDLLGRAGLF 488 (707)
Q Consensus 426 ~m~~~g~~p~~~t-~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~ 488 (707)
+..+ ..|+... +. .+...+...|++++|...++.+.+... .+. ..+..+...|.+.|++
T Consensus 213 ~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 213 ECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP--SVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--SSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHHccCH
Confidence 8887 4455432 22 235668889999999999999887422 222 2355678899999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhc
Q 043060 489 DEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA 551 (707)
Q Consensus 489 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 551 (707)
++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++.++..+..++...
T Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9999999986 4456 4889999999999999999999999999999999999888887776543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=5.3e-18 Score=172.58 Aligned_cols=286 Identities=13% Similarity=0.111 Sum_probs=216.6
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHH
Q 043060 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEK---RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341 (707)
Q Consensus 265 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 341 (707)
+.+..++..++..+...|++++|.++|+++.+ .+...+..++..+...|++++|+..++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 44556666777777777777777777777653 244566667777777788888888888777643 22455666666
Q ss_pred HHHhccC-CchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCH
Q 043060 342 PACAYLG-ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKA 417 (707)
Q Consensus 342 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 417 (707)
..+...| +++.|...+..+.+..+. +...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKT--YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTT--CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 6777777 777788877777776655 56678888888888888888888888763 33556777788888889999
Q ss_pred HHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-------CCCChHHHHHHHHHHHHcCCHH
Q 043060 418 DKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYK-------ISPKLQHYGCMVDLLGRAGLFD 489 (707)
Q Consensus 418 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~ 489 (707)
++|++.|++..+ ..|+ ...+..+...+...|++++|...++.+.+... .+.....+..+..+|.+.|+++
T Consensus 176 ~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999998887 4444 45778888888889999999998888876421 1334578888999999999999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh-hhcCChh
Q 043060 490 EAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY-AGAGRWD 555 (707)
Q Consensus 490 ~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 555 (707)
+|.+.+++. ...|+ ..+|..+...+...|++++|...++++++++|+++.++..++.++ ...|+.+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999886 33444 788889999999999999999999999999999999999999888 4555543
No 16
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=1e-16 Score=174.66 Aligned_cols=394 Identities=12% Similarity=0.100 Sum_probs=249.5
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHhcCCCC---CeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHH
Q 043060 164 DPFVHTSLINMYAQNGELESARLVFNKSSLR---DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240 (707)
Q Consensus 164 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll 240 (707)
+...|..++. +.+.|++++|+.+|+++... +...|..++..+.+.|++++|.++|++.+. ..|+...|...+
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~----~~p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM----KVLHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----TCCCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCChHHHHHHH
Confidence 3444444444 24445555555555544321 334455555555555555555555555531 224433333333
Q ss_pred HHH-hccCCchHHHH----HHHHHHHc-CCCc-hhHHHHHHHHHHHh---------cCCHHHHHHHHHhcCC-CC---hh
Q 043060 241 SAC-AHMGSLELGNW----VCSLIEGH-GLGS-NLHVTNALIDMYSK---------CGDLVKARDLFESIEK-RD---VI 300 (707)
Q Consensus 241 ~~~-~~~g~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~-~~---~~ 300 (707)
... ...|+.+.|.+ +++..++. |..| +..+|..++....+ .|+++.|..+|++..+ |+ ..
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 211 22344444333 44433332 3222 34455555554433 4566666666666543 11 11
Q ss_pred hHHHHHHHH-------------HhcCCHHHHHHHHHHH------hhcC---CCCCh--------hhHHhHHHHHhcc---
Q 043060 301 SWNVMIGGY-------------THTSDYKEALMLFRQM------LQSN---IEPND--------VTFLSVLPACAYL--- 347 (707)
Q Consensus 301 ~~~~li~~~-------------~~~g~~~~A~~~~~~m------~~~g---~~p~~--------~t~~~ll~~~~~~--- 347 (707)
.|....... .+.+++++|..++.++ .+.. +.|+. ..|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 222211100 1245567777776652 2221 23431 2333333222211
Q ss_pred -CCc----hHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHh-------cCCHH-------HHHHHHhcCCC----CChHHH
Q 043060 348 -GAL----DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK-------CGNIK-------AAEQVFDGMGY----KTLASW 404 (707)
Q Consensus 348 -~~~----~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~----~~~~~~ 404 (707)
++. +.+..+++.++...+. +..+|..++..+.+ .|+++ +|..+|++... .+...|
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~p~--~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 222 3667788888888765 78889999988876 69977 89999998753 367799
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-
Q 043060 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDD--ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL- 481 (707)
Q Consensus 405 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~- 481 (707)
..++..+.+.|++++|..+|+++++ +.|+. ..|..++..+.+.|++++|..+|+...+. .+.+...|...+.+
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHH
Confidence 9999999999999999999999999 67764 37888888888999999999999999763 22233334333322
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch----hHHHHHHHhhhcCChh
Q 043060 482 LGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG----AYVLLSNMYAGAGRWD 555 (707)
Q Consensus 482 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~ 555 (707)
+...|+.++|.++|++. ...|+ ...|..++..+...|+.+.|..+++++++..|.++. .|...+......|+.+
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 480 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred HHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 34689999999999985 44464 889999999999999999999999999998776655 7878888888899999
Q ss_pred hHHHHHHHHhhCC
Q 043060 556 DVATIRTRLNDKG 568 (707)
Q Consensus 556 ~a~~~~~~m~~~~ 568 (707)
.+..+.+++.+.-
T Consensus 481 ~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 481 SILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
Confidence 9999999987654
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=4.3e-17 Score=165.83 Aligned_cols=265 Identities=11% Similarity=0.091 Sum_probs=231.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHH
Q 043060 297 RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376 (707)
Q Consensus 297 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 376 (707)
.+...+..++..+...|++++|+++|+++.+.. +.+...+..+...+...|+++.|...+..+.+..+. +..++..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS--NPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--STHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC--CHHHHHHH
Confidence 466678888899999999999999999998764 234456666778889999999999999999998776 77889999
Q ss_pred hhHHHhcC-CHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCC
Q 043060 377 IDMYAKCG-NIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGL 451 (707)
Q Consensus 377 i~~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 451 (707)
...|...| ++++|.+.|+++. ..+...|..+...+...|++++|+..|+++.+ ..|+ ...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ--LMKGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHhh
Confidence 99999999 9999999999864 34677899999999999999999999999998 4454 4577778899999999
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCCh
Q 043060 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EM----------KPDAAIWTSLLGACRVHGRL 520 (707)
Q Consensus 452 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~ll~~~~~~g~~ 520 (707)
+++|...++.+.+ ..+.+...+..+...|.+.|++++|.+.++++ .. ..+..+|..+...+...|++
T Consensus 175 ~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 175 SKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999976 33456788999999999999999999999886 11 22367999999999999999
Q ss_pred hHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 521 ELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 521 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
++|...++++++..|+++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999999877643
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=4.3e-16 Score=167.95 Aligned_cols=365 Identities=10% Similarity=0.007 Sum_probs=255.7
Q ss_pred ChhHHHHHHHHHHh----CCChhHHHHHHhcCCC-CCeehHHHHHHHHHh----CCChhHHHHHHHhCccccCCCCCCHh
Q 043060 164 DPFVHTSLINMYAQ----NGELESARLVFNKSSL-RDAVSYTALITGYAS----RGYLDDARQLFDEMPIREENFVPNES 234 (707)
Q Consensus 164 ~~~~~~~li~~~~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~~p~~~ 234 (707)
++..+..|...|.. .+++++|...|++..+ .+..++..|...|.. .+++++|++.|++... .+ +..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~--~~---~~~ 112 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL--KG---LPQ 112 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TT---CHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--CC---CHH
Confidence 34444445555554 5555555555554332 244455555555555 5666666666666532 22 334
Q ss_pred hHHHHHHHHhc----cCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhhHHHH
Q 043060 235 TVVTVLSACAH----MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK----CGDLVKARDLFESIEK-RDVISWNVM 305 (707)
Q Consensus 235 t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l 305 (707)
.+..+...+.. .+++++|...+....+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~L 189 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQL 189 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44445555544 556666776666666654 45556666666766 6677777777776543 356677777
Q ss_pred HHHHHh----cCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhc----cCCchHHHHHHHHHHHhCCCCCcHHHHhHHh
Q 043060 306 IGGYTH----TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY----LGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377 (707)
Q Consensus 306 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 377 (707)
...|.. .+++++|+++|++..+.| +...+..+...+.. .++.+.|...+....+.+ +...+..|.
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg 262 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG----NSIAQFRLG 262 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT----CHHHHHHHH
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHH
Confidence 777776 777888888887777654 34445555555543 667778888877777654 555677777
Q ss_pred hHHHh----cCCHHHHHHHHhcCCC-CChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 043060 378 DMYAK----CGNIKAAEQVFDGMGY-KTLASWNAMISGLAMH-----GKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447 (707)
Q Consensus 378 ~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 447 (707)
.+|.. .++.++|.+.|++... .+...+..+...|... +++++|+..|++..+.| +...+..+...+.
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 339 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYF 339 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 78877 8899999999988754 4677888888888887 89999999999998864 4456666777776
Q ss_pred ccC---CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 043060 448 HAG---LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR----AGLFDEAEALLKTMEMKPDAAIWTSLLGACRV---- 516 (707)
Q Consensus 448 ~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~---- 516 (707)
..| +.++|.++|+...+. .+...+..|..+|.. .+++++|.+.|++.-...+...+..|...|..
T Consensus 340 ~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 340 RLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred hCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCC
Confidence 656 889999999998774 467788889999998 89999999999986323467888899999988
Q ss_pred cCChhHHHHHHHHHHccCCC---CchhHHHHHHHhhh
Q 043060 517 HGRLELGESVAKHLLELEPE---NPGAYVLLSNMYAG 550 (707)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 550 (707)
.++.++|...++++.+.+|+ ++.+...|+.++..
T Consensus 416 ~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 89999999999999999854 77777777776654
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=1.2e-17 Score=172.97 Aligned_cols=279 Identities=13% Similarity=0.034 Sum_probs=213.5
Q ss_pred HhcCCHHHHHH-HHHhcCC---C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCc
Q 043060 279 SKCGDLVKARD-LFESIEK---R----DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350 (707)
Q Consensus 279 ~~~g~~~~A~~-~~~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 350 (707)
.-.|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34467777777 7765442 1 24557777778888888888888888887753 23555667777777788888
Q ss_pred hHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHH---------------HHHHHH
Q 043060 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNA---------------MISGLA 412 (707)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~---------------li~~~~ 412 (707)
+.|...+..+.+..+. +..++..+...|...|++++|.+.|+++.. .+...+.. .+..+.
T Consensus 115 ~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 115 LLAISALRRCLELKPD--NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 8888888888777655 677788888888888888888888876532 12222221 133334
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHH
Q 043060 413 MHGKADKALSLFSRMIGEGLQPD---DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489 (707)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 489 (707)
..|++++|+..|+++.+ ..|+ ..++..+...+...|++++|...|+.+.+. .+.+...|..+...|.+.|+++
T Consensus 193 ~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVR--LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHH--HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred hcccHHHHHHHHHHHHH--hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHH
Confidence 88999999999999998 4555 668889999999999999999999999873 3446788999999999999999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC-----------chhHHHHHHHhhhcCChhh
Q 043060 490 EAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN-----------PGAYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 490 ~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~ 556 (707)
+|.+.++++ ...|+ ..+|..+...+...|++++|...+++++++.|++ ..+|..++.+|...|++++
T Consensus 269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 999999986 44555 8899999999999999999999999999998877 7899999999999999999
Q ss_pred HHHHHHHH
Q 043060 557 VATIRTRL 564 (707)
Q Consensus 557 a~~~~~~m 564 (707)
|..++++.
T Consensus 349 A~~~~~~~ 356 (368)
T 1fch_A 349 YGAADARD 356 (368)
T ss_dssp HHHHHTTC
T ss_pred HHHhHHHH
Confidence 99987643
No 20
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=9e-15 Score=164.76 Aligned_cols=382 Identities=13% Similarity=0.115 Sum_probs=296.5
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHH
Q 043060 129 NTYTFPFILKSCAKISAISEGKQIHAHVLKLG--LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGY 206 (707)
Q Consensus 129 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 206 (707)
|+.-.....+++...|.+.++.++++.++-.+ +..+....+.|+.+..+. +......+.++...-+ ...+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 33445667788889999999999999988432 123456677777777776 5566666666554223 45577888
Q ss_pred HhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHH
Q 043060 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286 (707)
Q Consensus 207 ~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 286 (707)
...|.+++|..+|++... .....+.++. ..+++++|.++...+ .+..+|..+..++.+.|++++
T Consensus 1060 i~lglyEEAf~IYkKa~~-------~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDV-------NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HhCCCHHHHHHHHHHcCC-------HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHH
Confidence 899999999999998621 1122233322 667889888888765 357899999999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCC
Q 043060 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK 366 (707)
Q Consensus 287 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 366 (707)
|...|.+. .|...|..++..+.+.|++++|++.|....+.. ++....+.+..+|++.++++....+. + +
T Consensus 1124 AIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~-~-- 1192 (1630)
T 1xi4_A 1124 AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N-G-- 1192 (1630)
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-C--
Confidence 99999774 678888999999999999999999999887754 33333335888899998887544332 1 1
Q ss_pred CCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 043060 367 LNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446 (707)
Q Consensus 367 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 446 (707)
++...+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|++.+++. -+..+|..+..+|
T Consensus 1193 -~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1193 -PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 1260 (1630)
T ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHH
Confidence 15556677999999999999999999985 48999999999999999999999977 3457899999999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh--cCChhH
Q 043060 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRV--HGRLEL 522 (707)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~--~g~~~~ 522 (707)
...|++..|......+ ..+...+..++..|.+.|.+++|+.+++.. +.+|. ...|.-|...+.+ -++..+
T Consensus 1261 ve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred hhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHH
Confidence 9999999998876543 346677789999999999999999999875 55554 5677666666665 457777
Q ss_pred HHHHHHHHHccCC-----CCchhHHHHHHHhhhcCChhhHHH
Q 043060 523 GESVAKHLLELEP-----ENPGAYVLLSNMYAGAGRWDDVAT 559 (707)
Q Consensus 523 A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 559 (707)
+.+.|..-..+.| .+...|..+.-.|.+.|+|+.|..
T Consensus 1335 hlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1335 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 8888887777666 677889999999999999999984
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=8.1e-18 Score=170.60 Aligned_cols=344 Identities=13% Similarity=0.094 Sum_probs=156.0
Q ss_pred hCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHH
Q 043060 177 QNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256 (707)
Q Consensus 177 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 256 (707)
+.|++++|.+.++++..+ .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 678899999999999655 48999999999999999999999654 47778999999999999999999988
Q ss_pred HHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhh
Q 043060 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVT 336 (707)
Q Consensus 257 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 336 (707)
....+. .+++.+.+.|+.+|.++|+++++.++++. ++..+|+.+...|...|++++|...|.++ ..
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TC
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 877774 55678899999999999999998888853 67779999999999999999999999977 36
Q ss_pred HHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 043060 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGK 416 (707)
Q Consensus 337 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 416 (707)
|..+..++.+.|+++.|.+.+..+ . ++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|+
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~-~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------N-STRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGY 222 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------T-CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------C-CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCC
Confidence 888899999999999999888877 2 78889999999999999999977777654 444445568889999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHh-HHHHHHHHH--hccCCHHHHHHHHHHhHHhcCCCC------ChHHHHHHHHHHHHcCC
Q 043060 417 ADKALSLFSRMIGEGLQPDDI-TFVGVLSAC--NHAGLLDIGRQYFNAMIQDYKISP------KLQHYGCMVDLLGRAGL 487 (707)
Q Consensus 417 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~--~~~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~ 487 (707)
+++|+.+++.... ..+... .|+.+..++ .+.+++.+..+.|..- -+++| +...|.-++-.|...++
T Consensus 223 ~eEai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e 297 (449)
T 1b89_A 223 FEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEE 297 (449)
T ss_dssp HHHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhch
Confidence 9999999998876 444433 444444444 4456666666666532 24444 35678889999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHH
Q 043060 488 FDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562 (707)
Q Consensus 488 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 562 (707)
++.|....-+-+ |+..--..+.....+..+.|.--+...-.++..| .....|..++...=+...+.++++
T Consensus 298 ~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~~ 367 (449)
T 1b89_A 298 YDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFS 367 (449)
T ss_dssp HHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHHH
Confidence 999888665542 2222222333344444554444333333333333 334444444444334444444433
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=2.1e-16 Score=160.23 Aligned_cols=281 Identities=14% Similarity=0.168 Sum_probs=111.8
Q ss_pred cCCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHH
Q 043060 75 SPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154 (707)
Q Consensus 75 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 154 (707)
-+.|++++|.+.++++++|+ +|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 47889999999999997775 8999999999999999999999653 588899999999999999999999888
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHh
Q 043060 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNES 234 (707)
Q Consensus 155 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~ 234 (707)
..++. .+++.+.+.|+.+|.+.|+++++.++++. ++..+|+.+...|...|++++|..+|..+ .
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----------~ 149 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----------S 149 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----------T
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----------h
Confidence 77774 45678899999999999999999988864 56779999999999999999999999987 2
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 043060 235 TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314 (707)
Q Consensus 235 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 314 (707)
.|..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|+
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGY 222 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCC
Confidence 4777777777777777777777665 256677777777777777777766555543 333334456666777777
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHh--cCCHHHHHHH
Q 043060 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK--CGNIKAAEQV 392 (707)
Q Consensus 315 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~--~g~~~~A~~~ 392 (707)
+++|+.+++...... +. ....|+-|.-+|++ -+++.+..+.
T Consensus 223 ~eEai~lLe~aL~le-~a------------------------------------h~~~ftel~il~~ky~p~k~~ehl~~ 265 (449)
T 1b89_A 223 FEELITMLEAALGLE-RA------------------------------------HMGMFTELAILYSKFKPQKMREHLEL 265 (449)
T ss_dssp HHHHHHHHHHHTTST-TC------------------------------------CHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc-HH------------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 777777776665432 11 34444555445544 3455555555
Q ss_pred HhcCCC--------CChHHHHHHHHHHHHcCCHHHHHHH
Q 043060 393 FDGMGY--------KTLASWNAMISGLAMHGKADKALSL 423 (707)
Q Consensus 393 ~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~ 423 (707)
|..-.. .+...|..++-.|.+.++++.|...
T Consensus 266 ~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 266 FWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 553221 1445788888999999999988763
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=5e-17 Score=161.62 Aligned_cols=267 Identities=13% Similarity=0.048 Sum_probs=189.9
Q ss_pred HhcCCHHHHHHHHHhcCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHH
Q 043060 279 SKCGDLVKARDLFESIEKRDV----ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGK 354 (707)
Q Consensus 279 ~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 354 (707)
...|+++.|+..++.....++ .....+..+|...|++++|+..++.. -.|+..++..+...+...++.+.+.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 344555555555555443321 12233445555555555555544321 2334444555555555555555555
Q ss_pred HHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 043060 355 WIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434 (707)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 434 (707)
+.++.+...+..|.+..++..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|++.|+++.+ ..|
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~~p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD--QDE 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCT
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCc
Confidence 55555555443222667788888999999999999999998 56788999999999999999999999999998 457
Q ss_pred CHhHH---HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHH
Q 043060 435 DDITF---VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTS 509 (707)
Q Consensus 435 ~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ 509 (707)
+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|.+.+++. ...|+ ..+|..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 75422 12334445569999999999999884 4568889999999999999999999999995 55665 888999
Q ss_pred HHHHHHhcCChhH-HHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHH
Q 043060 510 LLGACRVHGRLEL-GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559 (707)
Q Consensus 510 ll~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 559 (707)
++..+...|+.++ +.+.++++++++|+++.+. +...+.+.++++..
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 9999999999876 5789999999999987644 44555555665544
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=2.2e-15 Score=164.20 Aligned_cols=405 Identities=12% Similarity=0.131 Sum_probs=282.8
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043060 94 NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLIN 173 (707)
Q Consensus 94 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 173 (707)
|...|..++. +.+.|++++|..+|+++.+. .|-+...|...+..+.+.|+++.|+.+|+.+++.. |+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 6678998888 47789999999999999875 34456678888888889999999999999988763 67777777775
Q ss_pred HH-HhCCChhHHHH----HHhcCC------CCCeehHHHHHHHHHh---------CCChhHHHHHHHhCccccCCCCCCH
Q 043060 174 MY-AQNGELESARL----VFNKSS------LRDAVSYTALITGYAS---------RGYLDDARQLFDEMPIREENFVPNE 233 (707)
Q Consensus 174 ~~-~~~g~~~~A~~----~f~~~~------~~~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~~~~~~p~~ 233 (707)
.. ...|+.+.|++ +|++.. ..+...|...+....+ .|++++|..+|++.+. .|+.
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-----~P~~ 162 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-----NPMI 162 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-----SCCT
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-----chhh
Confidence 33 45677776654 665431 2356678887776654 6788888888888752 2332
Q ss_pred ---hhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHh-------cC------CC
Q 043060 234 ---STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES-------IE------KR 297 (707)
Q Consensus 234 ---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~------~~ 297 (707)
..|..........+. .+...++. .+.++++.|..++.. +. .+
T Consensus 163 ~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred hHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 222221111000010 01111110 123445556555543 11 11
Q ss_pred C--------hhhHHHHHHHHHhc----CCH----HHHHHHHHHHhhcCCCCChhhHHhHHHHHhc-------cCCch---
Q 043060 298 D--------VISWNVMIGGYTHT----SDY----KEALMLFRQMLQSNIEPNDVTFLSVLPACAY-------LGALD--- 351 (707)
Q Consensus 298 ~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~--- 351 (707)
+ ...|...+.-.... ++. ++|+.+|++..... +-+...|......+.. .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 1 24566555433322 222 47788898888752 2345566666666554 68887
Q ss_pred ----HHHHHHHHHHH-hCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCh-HHHHHHHHHHHHcCCHHHHHH
Q 043060 352 ----LGKWIHAYIDK-NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTL-ASWNAMISGLAMHGKADKALS 422 (707)
Q Consensus 352 ----~a~~~~~~~~~-~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~-~~~~~li~~~~~~g~~~~A~~ 422 (707)
.|..+++..++ ..+. +..++..++..+.+.|++++|..+|+++. ..+. ..|..++..+.+.|+.++|.+
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~--~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKK--NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 88999999887 4443 78899999999999999999999999863 2343 589999999999999999999
Q ss_pred HHHHHHHCCCCCCH-hHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--
Q 043060 423 LFSRMIGEGLQPDD-ITFVGVLSA-CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-- 498 (707)
Q Consensus 423 ~~~~m~~~g~~p~~-~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-- 498 (707)
+|++..+. .|+. ..|...... +...|+.++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++.
T Consensus 378 ~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 378 IFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 99999984 4442 233332222 346899999999999988753 346788999999999999999999999986
Q ss_pred --CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 043060 499 --EMKPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 499 --~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 536 (707)
+..|+ ...|...+.....+|+.+.+..+.+++.+..|+
T Consensus 454 ~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 454 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp SCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 23343 558999999999999999999999999998884
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=2.7e-17 Score=170.19 Aligned_cols=259 Identities=10% Similarity=-0.017 Sum_probs=208.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHh
Q 043060 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377 (707)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 377 (707)
+...|..+...+.+.|++++|++.|+++.+.. +.+..++..+...+...|+++.|...+..+.+..+. +..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN--NLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHHHHH
Confidence 44557888888888888888888888887754 235667777888888888888888888888887665 677888899
Q ss_pred hHHHhcCCHHHHHHHHhcCCCCC-------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHhHHHH
Q 043060 378 DMYAKCGNIKAAEQVFDGMGYKT-------------LASWNAMISGLAMHGKADKALSLFSRMIGEGLQP---DDITFVG 441 (707)
Q Consensus 378 ~~y~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ 441 (707)
..|...|++++|.+.|+++...+ ...+..+...+...|++++|+..|+++.+ ..| +..++..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH--QNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHH--HSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH--hCcCccCHHHHHH
Confidence 99999999999999988774321 22344567889999999999999999998 455 4668899
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 043060 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGR 519 (707)
Q Consensus 442 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~ 519 (707)
+...+...|++++|...|+.+.+. .+.+...|..+..+|.+.|++++|++.|+++ ...|+ ..+|..+...+...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 999999999999999999999873 3456789999999999999999999999986 45565 8899999999999999
Q ss_pred hhHHHHHHHHHHccCCC------------CchhHHHHHHHhhhcCChhhHHHHHHH
Q 043060 520 LELGESVAKHLLELEPE------------NPGAYVLLSNMYAGAGRWDDVATIRTR 563 (707)
Q Consensus 520 ~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 563 (707)
+++|...+++++++.|+ +..+|..|+.++...|+.+.+.++.++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999998876 367899999999999999998877654
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=1.6e-16 Score=164.50 Aligned_cols=299 Identities=11% Similarity=0.028 Sum_probs=191.4
Q ss_pred HhCCChhHHHH-HHHhCccccCCC-CCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCH
Q 043060 207 ASRGYLDDARQ-LFDEMPIREENF-VPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284 (707)
Q Consensus 207 ~~~g~~~~A~~-l~~~m~~~~~~~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 284 (707)
...|++++|++ .|++........ ..+...+..+...+...|++++|...+..+++.. +.+..++..+...|.+.|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34577888887 777664211111 1134557777778888888888888888888764 45677888888889999999
Q ss_pred HHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHH
Q 043060 285 VKARDLFESIE---KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361 (707)
Q Consensus 285 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 361 (707)
++|...|+++. ..+..+|..+...|...|++++|++.|+++.... |+........... .
T Consensus 115 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~------~---------- 176 (368)
T 1fch_A 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG------A---------- 176 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC----------------------
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH------h----------
Confidence 99999888765 3467788889999999999999999999988753 3322211110000 0
Q ss_pred HhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-
Q 043060 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YK--TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD- 435 (707)
Q Consensus 362 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 435 (707)
+... ....+..+...+ ..|++++|...|+++. .. +..+|..+...|...|++++|+..|+++.+ ..|+
T Consensus 177 --~~~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~ 250 (368)
T 1fch_A 177 --GGAG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPND 250 (368)
T ss_dssp ------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred --hhhc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCC
Confidence 0000 001112222233 6677777777776652 22 456777777777777777777777777776 3444
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC------------
Q 043060 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP------------ 502 (707)
Q Consensus 436 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p------------ 502 (707)
..++..+...+...|++++|...|+.+.+. .+.+...+..+..+|.+.|++++|.+.++++ ...|
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 446777777777778888888877777653 2335667777778888888888888877765 1111
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 043060 503 DAAIWTSLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 503 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
...+|..+..++...|+.++|..++++.++
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 157888888888888888888887775554
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.75 E-value=9.8e-15 Score=157.31 Aligned_cols=352 Identities=12% Similarity=-0.000 Sum_probs=295.8
Q ss_pred CCeehHHHHHHHHHh----CCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhc----cCCchHHHHHHHHHHHcCCC
Q 043060 194 RDAVSYTALITGYAS----RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH----MGSLELGNWVCSLIEGHGLG 265 (707)
Q Consensus 194 ~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~ 265 (707)
.+..++..+...|.. .+++++|+..|++... .+ +...+..+-..+.. .++.++|...+....+.|
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~--~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 109 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE--QG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-- 109 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH--CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence 366777778888888 8999999999999853 32 55677777777877 899999999999999876
Q ss_pred chhHHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-ChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCChhh
Q 043060 266 SNLHVTNALIDMYSK----CGDLVKARDLFESIEKR-DVISWNVMIGGYTH----TSDYKEALMLFRQMLQSNIEPNDVT 336 (707)
Q Consensus 266 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t 336 (707)
+...+..|..+|.. .+++++|...|++..+. +..++..+...|.. .+++++|++.|++..+.| +...
T Consensus 110 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 110 -LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 66778889999988 88999999999987654 67788888888887 889999999999998875 5566
Q ss_pred HHhHHHHHhc----cCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHh----cCCHHHHHHHHhcCC-CCChHHHHHH
Q 043060 337 FLSVLPACAY----LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK----CGNIKAAEQVFDGMG-YKTLASWNAM 407 (707)
Q Consensus 337 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~-~~~~~~~~~l 407 (707)
+..+...+.. .++.+.|...+....+.+ +...+..|..+|.. .++.++|.+.|++.. ..+...+..+
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l 261 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRL 261 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6677777766 789999999999998875 56678889999986 899999999999874 4567788888
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc-----CCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 043060 408 ISGLAM----HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA-----GLLDIGRQYFNAMIQDYKISPKLQHYGCM 478 (707)
Q Consensus 408 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 478 (707)
...|.. .++.++|+..|++..+.| +...+..+...+... +++++|..+|+...+. .+...+..|
T Consensus 262 g~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~l 334 (490)
T 2xm6_A 262 GYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANL 334 (490)
T ss_dssp HHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHH
Confidence 888888 899999999999998754 455666777777776 8999999999998774 355677888
Q ss_pred HHHHHHcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCCCchhHHHHHHHhhh-
Q 043060 479 VDLLGRAG---LFDEAEALLKTMEMKPDAAIWTSLLGACRV----HGRLELGESVAKHLLELEPENPGAYVLLSNMYAG- 550 (707)
Q Consensus 479 i~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~- 550 (707)
..+|.+.| ++++|++.|++.-...+...+..|...+.. .+++++|...++++.+.+ ++.++..|+.+|..
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g 412 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYG 412 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcC
Confidence 88888877 789999999987323578899999999998 899999999999998865 57899999999998
Q ss_pred ---cCChhhHHHHHHHHhhCCC
Q 043060 551 ---AGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 551 ---~g~~~~a~~~~~~m~~~~~ 569 (707)
.++.++|...+++..+.+.
T Consensus 413 ~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 413 LGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998774
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=2.5e-15 Score=161.22 Aligned_cols=369 Identities=12% Similarity=0.002 Sum_probs=202.2
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHhcCC------------CCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCC
Q 043060 165 PFVHTSLINMYAQNGELESARLVFNKSS------------LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPN 232 (707)
Q Consensus 165 ~~~~~~li~~~~~~g~~~~A~~~f~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~ 232 (707)
...||.|...|...|+.++|++.|++.. ....++|+.+...|...|++++|...+++.........
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~-- 128 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS-- 128 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc--
Confidence 4456777777777777777766664321 11334555555555556666666555555421000000
Q ss_pred HhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhc--CCHHHHHHHHHhcCC---CChhhHHHHHH
Q 043060 233 ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC--GDLVKARDLFESIEK---RDVISWNVMIG 307 (707)
Q Consensus 233 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~---~~~~~~~~li~ 307 (707)
...-.....++..+..++.+. +++++|...|++..+ .++..+..+..
T Consensus 129 ----------------------------~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~ 180 (472)
T 4g1t_A 129 ----------------------------SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAI 180 (472)
T ss_dssp ----------------------------CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred ----------------------------cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 000001123333333333332 346666666665442 23334444333
Q ss_pred H---HHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHh----ccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHH
Q 043060 308 G---YTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA----YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMY 380 (707)
Q Consensus 308 ~---~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y 380 (707)
. +...++.++|++.|++..+.. +.+...+..+...+. ..++.+.|.+.+.......+. +..++..+...|
T Consensus 181 ~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~--~~~~~~~lg~~~ 257 (472)
T 4g1t_A 181 ASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG--VTDVLRSAAKFY 257 (472)
T ss_dssp HHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS--CHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc--HHHHHHHHHHHH
Confidence 3 234455666676666666542 112333333333332 234566677777776666555 566667777777
Q ss_pred HhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHH-------------------cCCHHHHHHHHHHHHHCCCCCCH-h
Q 043060 381 AKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAM-------------------HGKADKALSLFSRMIGEGLQPDD-I 437 (707)
Q Consensus 381 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~~p~~-~ 437 (707)
.+.|++++|...|++.. ..+..+|..+...|.. .+..++|+..|++..+ ..|+. .
T Consensus 258 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~ 335 (472)
T 4g1t_A 258 RRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFR 335 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCC
T ss_pred HHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhh
Confidence 77777777777776652 2344555555554432 2346788888888887 45554 4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh--HHHHHHHHH-HHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL--QHYGCMVDL-LGRAGLFDEAEALLKTM-EMKPDAAIWTSLLGA 513 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~ 513 (707)
++..+...+...|++++|...|++..+. ...+.. ..+..+... +...|+.++|+..|++. .+.|+...+..
T Consensus 336 ~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---- 410 (472)
T 4g1t_A 336 VCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---- 410 (472)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH----
T ss_pred hhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH----
Confidence 7888899999999999999999998763 222221 123333332 34679999999999885 66777543332
Q ss_pred HHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCccCCcccEE
Q 043060 514 CRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSI 578 (707)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 578 (707)
..+.+..++++.++.+|+++.+|..|+.+|...|++++|++.|++..+.+.......+|+
T Consensus 411 -----~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 411 -----MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp -----HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred -----HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 234566778888999999999999999999999999999999999998776544444554
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=7.6e-17 Score=166.79 Aligned_cols=232 Identities=12% Similarity=0.029 Sum_probs=198.9
Q ss_pred ChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHH
Q 043060 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMIS 409 (707)
Q Consensus 333 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 409 (707)
+...+......+...|+++.|...++.+++..+. +..++..+..+|.+.|++++|.+.|+++. ..+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG--DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4455788888999999999999999999998876 78899999999999999999999999874 457889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHh-----------HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 043060 410 GLAMHGKADKALSLFSRMIGEGLQPDDI-----------TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478 (707)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 478 (707)
.|...|++++|+..|+++.+ ..|+.. .+..+...+...|++++|..+|+.+.+.....++...+..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 99999999999999999998 455433 22345778899999999999999998753332368899999
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhh
Q 043060 479 VDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 556 (707)
...|.+.|++++|++.++++ ...|+ ..+|..++..+...|++++|+..+++++++.|+++.++..++.+|.+.|++++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999986 44554 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCC
Q 043060 557 VATIRTRLNDKG 568 (707)
Q Consensus 557 a~~~~~~m~~~~ 568 (707)
|.+.++++.+..
T Consensus 300 A~~~~~~al~~~ 311 (365)
T 4eqf_A 300 AVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999999998754
No 30
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=2.9e-13 Score=152.68 Aligned_cols=402 Identities=12% Similarity=0.105 Sum_probs=222.7
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHCCC--CCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 043060 98 WNNIIRGHSLSSSPVVAIKFYVRMILSGF--VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMY 175 (707)
Q Consensus 98 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 175 (707)
-...+++|...|.+.+|+++|++....+- .-+...-+.++.+..+. +..++.++...+-+ .....+...+
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHH
Confidence 34566777777777777777777763310 01122233344333333 44444444444321 1123355556
Q ss_pred HhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHH
Q 043060 176 AQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255 (707)
Q Consensus 176 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 255 (707)
...|.+++|..+|++.. ......+.++. ..+++++|.++.++.. +..+|..+..++.+.|++++|...
T Consensus 1060 i~lglyEEAf~IYkKa~-~~~~A~~VLie---~i~nldrAiE~Aervn--------~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERCN--------EPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCHHHHHHH
Confidence 66677777777776653 11111222221 5566777777666551 245666666777777777777666
Q ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC
Q 043060 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK--RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333 (707)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 333 (707)
|... .|...|..++..+.+.|++++|.+.|....+ ++....+.++.+|++.+++++ ++-|. . .|+
T Consensus 1128 YiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee-le~fI---~---~~n 1194 (1630)
T 1xi4_A 1128 YIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE-LEEFI---N---GPN 1194 (1630)
T ss_pred HHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH-HHHHH---h---CCC
Confidence 6442 3555666667777777777777777655432 222233346666666666664 33221 1 234
Q ss_pred hhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 043060 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAM 413 (707)
Q Consensus 334 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 413 (707)
...+..+...|...|+++.|..+|..+ ..|..++..|.+.|++++|.+.+++. .+..+|..+..+|..
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhh
Confidence 445555666666777777777776653 24666777777777777777777655 455667666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHH--cCCHHH
Q 043060 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGR--AGLFDE 490 (707)
Q Consensus 414 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~--~g~~~~ 490 (707)
.|++..|...... +..+...+..++..|.+.|.+++|..+++... ++.+ ....|+-|..+|.+ -+++.+
T Consensus 1263 ~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred hhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHHHHHhCCHHHHHH
Confidence 6666666665443 22233344466666667777777777776554 2222 33445555555544 345555
Q ss_pred HHHHHHh-CCCCC------CHHHHHHHHHHHHhcCChhHHHHHHHHHHc------------cCCCCchhHHHHHHHhhhc
Q 043060 491 AEALLKT-MEMKP------DAAIWTSLLGACRVHGRLELGESVAKHLLE------------LEPENPGAYVLLSNMYAGA 551 (707)
Q Consensus 491 A~~~~~~-~~~~p------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~------------~~p~~~~~~~~l~~~~~~~ 551 (707)
+.++|.+ +.+.| +...|.-+...|.+.|+++.|....-+-.. ..+.|+..|...++.|...
T Consensus 1335 hlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~ 1414 (1630)
T 1xi4_A 1335 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF 1414 (1630)
T ss_pred HHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhh
Confidence 5555544 33322 355666666677777777766632211111 1344666666666666655
Q ss_pred C
Q 043060 552 G 552 (707)
Q Consensus 552 g 552 (707)
+
T Consensus 1415 ~ 1415 (1630)
T 1xi4_A 1415 K 1415 (1630)
T ss_pred C
Confidence 5
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=2.1e-16 Score=160.37 Aligned_cols=272 Identities=9% Similarity=-0.000 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHh
Q 043060 269 HVTNALIDMYSKCGDLVKARDLFESIEK---RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345 (707)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 345 (707)
..+..+...+.+.|++++|...|+++.+ .+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 3444555556666666666666655432 244455555555666666666666666555432 112333334444444
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHH-HH-HHHHcCCHHHHHHH
Q 043060 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM-IS-GLAMHGKADKALSL 423 (707)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~~~ 423 (707)
..|+++.|...+..+.+..+.. ...+..+.... ++......+ .. .+...|++++|+..
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQY--EQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTT--TTC--------------------------------------CCTTSHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCcc--HHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 4444444444444444433321 11111110000 000000111 22 36677889999999
Q ss_pred HHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 043060 424 FSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMK 501 (707)
Q Consensus 424 ~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 501 (707)
++++.+. .| +..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...
T Consensus 161 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 161 LHAALEM--NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 9998873 44 4568888888999999999999999998763 3346788899999999999999999999986 444
Q ss_pred CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC------------CchhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 502 PD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPE------------NPGAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 502 p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
|+ ..+|..+...+...|++++|...++++++..|. ++.++..++.+|.+.|++++|..++++..
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 54 889999999999999999999999999999998 78899999999999999999999887543
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=1.2e-15 Score=151.72 Aligned_cols=248 Identities=12% Similarity=0.060 Sum_probs=202.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCCh--hhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhc
Q 043060 306 IGGYTHTSDYKEALMLFRQMLQSNIEPND--VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383 (707)
Q Consensus 306 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 383 (707)
|.-....|++.+|+..+++.... .|+. .....+..++...|+++.|...++. ..+|+...+..+...|...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCC
Confidence 34456789999999999887553 3443 3445677899999999998875543 2344778889999999999
Q ss_pred CCHHHHHHHHhcCC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHH
Q 043060 384 GNIKAAEQVFDGMG-----YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQY 458 (707)
Q Consensus 384 g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 458 (707)
|+.++|.+.++++. ..+...+..+...+.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999862 23667788888999999999999999987 45666888899999999999999999
Q ss_pred HHHhHHhcCCCCChHH---HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 043060 459 FNAMIQDYKISPKLQH---YGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLEL 533 (707)
Q Consensus 459 ~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 533 (707)
|+.+.+. .|+... ...++..+...|++++|..+|+++ ...| +...|+.+..++...|++++|+..++++++.
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999875 254321 123445555669999999999997 3344 5889999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHhhhcCChhh-HHHHHHHHhhCCC
Q 043060 534 EPENPGAYVLLSNMYAGAGRWDD-VATIRTRLNDKGM 569 (707)
Q Consensus 534 ~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~~ 569 (707)
+|+++.++..++.++...|++++ +.++++++.+..+
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999987 5789999887554
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=1.5e-14 Score=155.15 Aligned_cols=341 Identities=11% Similarity=-0.019 Sum_probs=184.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHhcCC-------CC----CeehHHHHHHHHHh--CCChhHHHHHHHhCccccCCCCCCH
Q 043060 167 VHTSLINMYAQNGELESARLVFNKSS-------LR----DAVSYTALITGYAS--RGYLDDARQLFDEMPIREENFVPNE 233 (707)
Q Consensus 167 ~~~~li~~~~~~g~~~~A~~~f~~~~-------~~----~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~~~~~~p~~ 233 (707)
+|+.+...|...|++++|...|++.. .+ ...++..+..++.. .+++++|++.|++.+. +.|+.
T Consensus 96 ~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~----~~p~~ 171 (472)
T 4g1t_A 96 TWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE----KKPKN 171 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH----HSTTC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH----hCCCC
Confidence 44444555555555555544443221 11 12334444444443 3457788888887743 33443
Q ss_pred h-hHHHHHHH---HhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHh----cCCHHHHHHHHHhcC---CCChhhH
Q 043060 234 S-TVVTVLSA---CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK----CGDLVKARDLFESIE---KRDVISW 302 (707)
Q Consensus 234 ~-t~~~ll~~---~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~---~~~~~~~ 302 (707)
. .+..+..+ +...++.+.|.+.+...++.. +.+..++..+...+.. .|++++|.+.|++.. ..+..+|
T Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~ 250 (472)
T 4g1t_A 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHH
Confidence 2 23333222 345567777777777777764 3345555555544444 456778888887754 3466788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh-hhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHH
Q 043060 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPND-VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381 (707)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 381 (707)
..+...|...|++++|+..|++..+. .|+. .++..+...+...+ . ..... ..........
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~-----~----~~~~~--------~~~~~~~~~~ 311 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKV-----F----QVMNL--------RENGMYGKRK 311 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHH-----H----HHHHC--------------CHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHH-----H----HhhhH--------HHHHHHHHHH
Confidence 88999999999999999999998875 3443 33433333322110 0 00000 0011111122
Q ss_pred hcCCHHHHHHHHhcC---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh----HHHHHHH-HHhccCCHH
Q 043060 382 KCGNIKAAEQVFDGM---GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI----TFVGVLS-ACNHAGLLD 453 (707)
Q Consensus 382 ~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~-a~~~~g~~~ 453 (707)
..+..+.|...|++. ...+..+|..+...|...|++++|++.|++..+. .|+.. .+..+.. .....|+.+
T Consensus 312 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (472)
T 4g1t_A 312 LLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK--ELTPVAKQLLHLRYGNFQLYQMKCED 389 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred HHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHCCCHH
Confidence 233466777777765 3345668889999999999999999999999984 44433 2222222 345789999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043060 454 IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLL 531 (707)
Q Consensus 454 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 531 (707)
+|...|++..+ +.|+...... ....+.+++++. ...| +..+|..|+..+...|++++|++.|++++
T Consensus 390 ~Ai~~y~kal~---i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kAL 457 (472)
T 4g1t_A 390 KAIHHFIEGVK---INQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGL 457 (472)
T ss_dssp HHHHHHHHHHH---SCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHHh---cCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999998875 4455433222 223334444443 3345 47899999999999999999999999999
Q ss_pred ccCCCCchhHHHHH
Q 043060 532 ELEPENPGAYVLLS 545 (707)
Q Consensus 532 ~~~p~~~~~~~~l~ 545 (707)
+++|.+|.+...++
T Consensus 458 e~~~~~p~a~~~~G 471 (472)
T 4g1t_A 458 ESGSLIPSASSWNG 471 (472)
T ss_dssp --------------
T ss_pred hcCCCCCcHhhcCC
Confidence 99998887766554
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.66 E-value=3.2e-15 Score=151.63 Aligned_cols=274 Identities=12% Similarity=0.028 Sum_probs=192.3
Q ss_pred CHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHH
Q 043060 232 NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK---RDVISWNVMIGG 308 (707)
Q Consensus 232 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 308 (707)
+...+..+...+...|++++|..+++.+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 44567778888999999999999999999875 45778899999999999999999999998763 467789999999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCChh-hHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHH-hh-HHHhcCC
Q 043060 309 YTHTSDYKEALMLFRQMLQSNIEPNDV-TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL-ID-MYAKCGN 385 (707)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-i~-~y~~~g~ 385 (707)
|...|++++|++.|+++.+.. |+.. .+..+...+ + +......+ .. .+...|+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~----------------------~-~~~~~~~~~~~~~~~~~~~ 153 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQAD----------------------V-DIDDLNVQSEDFFFAAPNE 153 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTTTC-------------------------------------------CCTTSHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHH----------------------H-HHHHHHHHHHhHHHHHccc
Confidence 999999999999999998753 3322 222221000 0 11111122 11 2556666
Q ss_pred HHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHH
Q 043060 386 IKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQYFNA 461 (707)
Q Consensus 386 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 461 (707)
+++|.+.++++. ..+...|..+...|...|++++|+..++++.+ ..|+ ..++..+...+...|++++|...|+.
T Consensus 154 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 154 YRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVE--LRPDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777766552 33556677777777777777777777777776 3343 44677777777777788888877777
Q ss_pred hHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCChhHHHHHH
Q 043060 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-------------AAIWTSLLGACRVHGRLELGESVA 527 (707)
Q Consensus 462 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~ll~~~~~~g~~~~A~~~~ 527 (707)
+.+. .+.+...+..+...|.+.|++++|.+.++++ ...|+ ..+|..+..++...|+.++|...+
T Consensus 232 a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 232 ALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7653 2335667777778888888888888877765 22232 567888888888888888888887
Q ss_pred HHHHccCC
Q 043060 528 KHLLELEP 535 (707)
Q Consensus 528 ~~~~~~~p 535 (707)
+++++..|
T Consensus 310 ~~~l~~~~ 317 (327)
T 3cv0_A 310 AQNVEPFA 317 (327)
T ss_dssp TCCSHHHH
T ss_pred HHHHHhcc
Confidence 76665443
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=1.4e-14 Score=137.45 Aligned_cols=192 Identities=16% Similarity=0.044 Sum_probs=156.7
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLS 444 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~ 444 (707)
+...+..+...+.+.|++++|...|++.. ..+...|..+...+.+.|++++|+..|++..+ ..|+.. .+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHH
Confidence 66778888999999999999999998763 34777899999999999999999999999998 567654 7888888
Q ss_pred HHhcc-----------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 043060 445 ACNHA-----------GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPDAAIWTSLLG 512 (707)
Q Consensus 445 a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~ 512 (707)
++... |++++|...|+...+. .+.+...+..+..+|...|++++|++.|++. ....+...|..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Confidence 88888 9999999999999863 3336788889999999999999999999986 22267899999999
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHH
Q 043060 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564 (707)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 564 (707)
.+...|++++|...++++++++|+++.++..++.++...|++++|.+.+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988764
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=3e-16 Score=171.37 Aligned_cols=129 Identities=14% Similarity=0.180 Sum_probs=115.1
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMG-------YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVG 441 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 441 (707)
...+||+||++|+++|++++|.++|++|. .+|+++||+||.+|++.|+.++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45689999999999999999999997753 57999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCC-HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043060 442 VLSACNHAGL-LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498 (707)
Q Consensus 442 ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 498 (707)
+|.++++.|+ .++|.++|++|.++ |+.||..+|++++....|.+-++...++...+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999997 58899999999886 99999999999998888776655555553333
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.8e-14 Score=140.54 Aligned_cols=155 Identities=10% Similarity=0.022 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 043060 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481 (707)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 481 (707)
..|..+...|...|++++|+..|+++.+ ..|+. ..+...|++++|...++.+.+ ..+.+...+..+...
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~ 148 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHH
Confidence 4555566666666666666666666666 34443 234445666677776666654 222244566666677
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHH
Q 043060 482 LGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559 (707)
Q Consensus 482 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 559 (707)
|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+++.++..++.+|...|++++|.+
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 77777777777777665 3333 366677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhC
Q 043060 560 IRTRLNDK 567 (707)
Q Consensus 560 ~~~~m~~~ 567 (707)
.+++..+.
T Consensus 229 ~~~~a~~~ 236 (258)
T 3uq3_A 229 TLDAARTK 236 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776553
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.7e-14 Score=139.23 Aligned_cols=236 Identities=11% Similarity=0.026 Sum_probs=202.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCC-c----HHHH
Q 043060 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN-N----VSLW 373 (707)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~~~ 373 (707)
...|..+...+...|++++|+..|+++.+.. .+...+..+...+...|+++.|...+..+.+..+..+ + ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4578889999999999999999999999887 7788899999999999999999999999988654320 1 6789
Q ss_pred hHHhhHHHhcCCHHHHHHHHhcCCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccC
Q 043060 374 TSLIDMYAKCGNIKAAEQVFDGMGY--KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAG 450 (707)
Q Consensus 374 ~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g 450 (707)
..+...|.+.|++++|.+.|+++.. ++ ...+...|++++|+..++++.. ..|+.. .+..+...+...|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhc
Confidence 9999999999999999999998743 33 3456778899999999999998 556554 7888888999999
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHH
Q 043060 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAK 528 (707)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~ 528 (707)
++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...|+ ..+|..+...+...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999874 3446788999999999999999999999986 44555 8899999999999999999999999
Q ss_pred HHHccC------CCCchhHHHHHHH
Q 043060 529 HLLELE------PENPGAYVLLSNM 547 (707)
Q Consensus 529 ~~~~~~------p~~~~~~~~l~~~ 547 (707)
+++++. |.+...+..+..+
T Consensus 232 ~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 232 AARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHhChhhcCCCchHHHHHHHHHh
Confidence 999998 8777777666554
No 39
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=1.5e-16 Score=173.65 Aligned_cols=151 Identities=14% Similarity=0.114 Sum_probs=128.8
Q ss_pred CCCchhhhhhhchhhcccCCCChHHHHHHHhcCC-------CCCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCc
Q 043060 58 LHNTQFALSKLIEICAVSPFGDLSYALLVFETIR-------EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNT 130 (707)
Q Consensus 58 ~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 130 (707)
...-..+||+|| +.|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.
T Consensus 123 ~~~~~~TynaLI--dglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv 200 (1134)
T 3spa_A 123 LSGQQQRLLAFF--KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200 (1134)
T ss_dssp CCHHHHHHHHHH--HHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred HHhHHHHHHHHH--HHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH
Confidence 334456899999 99999999999999997763 589999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhccCCh-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCC-----CeehHHHHHH
Q 043060 131 YTFPFILKSCAKISAI-SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-----DAVSYTALIT 204 (707)
Q Consensus 131 ~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~ 204 (707)
.||+++|.++++.|+. ++|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+ .+.+.+.|..
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHH
Confidence 9999999999999985 789999999999999999999999999988887777777776655432 2333444555
Q ss_pred HHHhCC
Q 043060 205 GYASRG 210 (707)
Q Consensus 205 ~~~~~g 210 (707)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 555544
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=5.4e-14 Score=138.66 Aligned_cols=241 Identities=12% Similarity=-0.056 Sum_probs=185.7
Q ss_pred hcCCHHHHHHHHHHHhhcCCC--C-ChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHH
Q 043060 311 HTSDYKEALMLFRQMLQSNIE--P-NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387 (707)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 387 (707)
..|++++|+..|+++.+.... | +..++..+...+...|+++.|...+..+.+..+. +..++..+...|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHccCHH
Confidence 346677777777777765321 1 3445666666777777777777777777777655 6778888999999999999
Q ss_pred HHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 043060 388 AAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 388 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
+|.+.|+++. ..+...|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999998763 34678899999999999999999999999998 667776666666667788999999999988876
Q ss_pred hcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 043060 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-----AAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 465 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 538 (707)
. .+++...+. ++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++.+|++.
T Consensus 173 ~--~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 K--SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp H--SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred c--CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 4 334444443 777788888999999999886 33332 57889999999999999999999999999999775
Q ss_pred hhHHHHHHHhhhcCChhhHHHHH
Q 043060 539 GAYVLLSNMYAGAGRWDDVATIR 561 (707)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~a~~~~ 561 (707)
..+ +.++...|++++|.+.+
T Consensus 250 ~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHH---HHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHhhHHHH
Confidence 544 66788889999988765
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=2.6e-13 Score=133.61 Aligned_cols=245 Identities=13% Similarity=0.051 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh--hhHHhHHHH
Q 043060 269 HVTNALIDMYSKCGDLVKARDLFESIEK---RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND--VTFLSVLPA 343 (707)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~ 343 (707)
.........+.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+.+..|+. ..+..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3455566777777888888887777643 24557777777777788888888877777763211111 124444555
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHH
Q 043060 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKADKA 420 (707)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 420 (707)
+...|+++.|...+..+.+..+. +..++..+...|...|++++|.+.|++... .+...|..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT--RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555443 344455555555555555555555554432 1333444444122222344444
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC---HHHHHHHHHh
Q 043060 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL---FDEAEALLKT 497 (707)
Q Consensus 421 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~ 497 (707)
++.|+++.+ ..|+ +...+..+..++...|+ +++|...+++
T Consensus 162 ~~~~~~a~~--~~p~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 162 DSSFVKVLE--LKPN-----------------------------------IYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHHHHHHHH--HSTT-----------------------------------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHHHHH--hCcc-----------------------------------chHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 444444444 2232 23444444555555554 4445555544
Q ss_pred C----CCCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcC
Q 043060 498 M----EMKPD------AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552 (707)
Q Consensus 498 ~----~~~p~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 552 (707)
. ...|+ ..+|..+...+...|++++|...++++++++|+++.+...+.......+
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 3 11122 2577788889999999999999999999999999888877776665544
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.57 E-value=2.4e-13 Score=144.23 Aligned_cols=374 Identities=9% Similarity=0.020 Sum_probs=216.9
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh---hHHHHHHhcCCCCCeehHHHHHHHHHhCC--
Q 043060 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGEL---ESARLVFNKSSLRDAVSYTALITGYASRG-- 210 (707)
Q Consensus 136 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-- 210 (707)
+...+.+.|++++|.++++...+.| ++..+..|..+|...|+. ++|...|++....+...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3444556677777777777777665 223344455555566666 77777777766556666777766555554
Q ss_pred ---ChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCc---hHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC--
Q 043060 211 ---YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL---ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG-- 282 (707)
Q Consensus 211 ---~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-- 282 (707)
++++|+..|++... .+.. ..+..+...|...+.. ..+.+.+......| +......|..+|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~--~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFA--NGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp CHHHHHHHHHHHHHHHH--TTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCcCHHHHHHHHHHHHH--CCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 66788888887743 3322 2444444445443332 23444444444444 3456666777777776
Q ss_pred --CHHHHHHHHHhcCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHH
Q 043060 283 --DLVKARDLFESIEKRDVISWNVMIGGYTHTS---DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357 (707)
Q Consensus 283 --~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 357 (707)
..+.+..+++.....++.++..+...|...| +.++|++.|++..+.|. +
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~------------------------- 211 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-V------------------------- 211 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-S-------------------------
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-H-------------------------
Confidence 4556666677777777778888888888888 77888888887777652 2
Q ss_pred HHHHHhCCCCCcHHHHhHHhhHHHhc----CCHHHHHHHHhcCCCCChHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHC
Q 043060 358 AYIDKNHQKLNNVSLWTSLIDMYAKC----GNIKAAEQVFDGMGYKTLASWNAMISG-L--AMHGKADKALSLFSRMIGE 430 (707)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~li~~y~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~ 430 (707)
+...+..|..+|... ++.++|.+.|++....+...+..+... | ...+++++|++.|++..+.
T Consensus 212 -----------~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~ 280 (452)
T 3e4b_A 212 -----------TAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA 280 (452)
T ss_dssp -----------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT
T ss_pred -----------HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence 222223344444333 567777777766553355566666665 3 3577888888888888876
Q ss_pred CCCCCHhHHHHHHHHHhccC-----CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHhCCCC
Q 043060 431 GLQPDDITFVGVLSACNHAG-----LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR----AGLFDEAEALLKTMEMK 501 (707)
Q Consensus 431 g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~ 501 (707)
| +...+..|...|. .| ++++|..+|+... ..+...+..|..+|.. ..++++|.+.|++.-..
T Consensus 281 g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 281 D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 5 4555556666665 44 8888888888764 3456677777777765 34888898888886323
Q ss_pred CCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 502 PDAAIWTSLLGACRV----HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 502 p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
-+......|...|.. ..|.++|...++++.+.++.........+......++.++|.++.++-.+
T Consensus 352 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 352 GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 345556666666654 45888999999998887764433333333333344566667766665544
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.55 E-value=2.8e-13 Score=139.14 Aligned_cols=242 Identities=11% Similarity=0.067 Sum_probs=161.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-ChhhHHhHHHHHhccCC-chHHHHHHHHHHHhCCCCCcHHHHhHHhh
Q 043060 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP-NDVTFLSVLPACAYLGA-LDLGKWIHAYIDKNHQKLNNVSLWTSLID 378 (707)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 378 (707)
.|+.+...+.+.|++++|++.|++.++. .| +...|..+...+...|+ +++|...+..+++..+. +..+|+.+..
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~--~~~a~~~~g~ 174 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK--NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC--CHHHHHHHHH
Confidence 3444455555555555555555555543 22 23334444444445553 55555555555555544 6666777777
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhc-cCCHH
Q 043060 379 MYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNH-AGLLD 453 (707)
Q Consensus 379 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~-~g~~~ 453 (707)
+|.+.|++++|+..|+++. ..+...|..+..++.+.|++++|+..|+++++ +.|+. ..|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence 7777777777777777653 44666777777778888888888888888887 55554 467777777777 55546
Q ss_pred HH-----HHHHHHhHHhcCCCCChHHHHHHHHHHHHcC--CHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC-------
Q 043060 454 IG-----RQYFNAMIQDYKISPKLQHYGCMVDLLGRAG--LFDEAEALLKTMEMKPD-AAIWTSLLGACRVHG------- 518 (707)
Q Consensus 454 ~a-----~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g------- 518 (707)
+| +..|+.+++. .+-+...|..+..+|.+.| ++++|++.++++...|+ ...+..++..+.+.|
T Consensus 253 eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 66 4677777652 2335677888888888877 58888888887755565 778888888888764
Q ss_pred --ChhHHHHHHHHH-HccCCCCchhHHHHHHHhhh
Q 043060 519 --RLELGESVAKHL-LELEPENPGAYVLLSNMYAG 550 (707)
Q Consensus 519 --~~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 550 (707)
.+++|+++++++ .+++|.....|..++..+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258899999999 89999888888887776653
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.53 E-value=2.7e-12 Score=124.68 Aligned_cols=168 Identities=13% Similarity=0.047 Sum_probs=83.7
Q ss_pred HHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHH
Q 043060 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSA 445 (707)
Q Consensus 370 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a 445 (707)
..++..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+.+..|+. ..+..+...
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~ 150 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLV 150 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHH
Confidence 3344444445555555555555554431 223444555555555555555555555555542233332 244445555
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 043060 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELG 523 (707)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A 523 (707)
+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...|+ ...+..+...+...|+.++|
T Consensus 151 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 228 (252)
T 2ho1_A 151 SLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTA 228 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHH
Confidence 55555555555555555442 1223444555555555555555555555553 22232 44455555555555555555
Q ss_pred HHHHHHHHccCCCCch
Q 043060 524 ESVAKHLLELEPENPG 539 (707)
Q Consensus 524 ~~~~~~~~~~~p~~~~ 539 (707)
.+.++++++..|+++.
T Consensus 229 ~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 229 ASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHHCCCCHH
Confidence 5555555555555543
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=7.1e-13 Score=128.81 Aligned_cols=197 Identities=8% Similarity=-0.027 Sum_probs=173.5
Q ss_pred HHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHH
Q 043060 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSA 445 (707)
Q Consensus 370 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a 445 (707)
...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+. .| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 5678888999999999999999998763 447789999999999999999999999999884 44 45688888999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 043060 446 CNHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLEL 522 (707)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 522 (707)
+...|++++|..+|+.+.+ .+..| +...+..+...|.+.|++++|.+.++++ ...|+ ..+|..++..+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999876 23445 5678888999999999999999999986 34454 8889999999999999999
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 523 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
|...++++++..|.++..+..++.+|...|++++|.++++++.+...
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999987654
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.52 E-value=3.8e-13 Score=138.15 Aligned_cols=227 Identities=11% Similarity=0.102 Sum_probs=196.2
Q ss_pred hhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCC-HHHHHHHHhcCC---CCChHHHHHHHHH
Q 043060 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN-IKAAEQVFDGMG---YKTLASWNAMISG 410 (707)
Q Consensus 335 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~ 410 (707)
..+..+...+...|+++.|...+..+++..+. +..+|+.+..+|.+.|+ +++|+..|+++. ..+...|+.+...
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~--~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc--CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 34566667788899999999999999999887 88999999999999997 999999999874 4578899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH-cCCH
Q 043060 411 LAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR-AGLF 488 (707)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~ 488 (707)
+...|++++|+..|+++++ +.|+.. .|..+..++...|++++|+..|+.+++. -+-+...|+.+..+|.+ .|..
T Consensus 176 ~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999 677654 8899999999999999999999999873 33477899999999999 6666
Q ss_pred HHH-----HHHHHhC-CCCCC-HHHHHHHHHHHHhcC--ChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcC-------
Q 043060 489 DEA-----EALLKTM-EMKPD-AAIWTSLLGACRVHG--RLELGESVAKHLLELEPENPGAYVLLSNMYAGAG------- 552 (707)
Q Consensus 489 ~~A-----~~~~~~~-~~~p~-~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 552 (707)
++| ++.+++. ...|+ ...|..+...+...| ++++|.+.++++ +.+|+++.++..|+++|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 887 4777764 56676 889999999999988 689999999998 889999999999999999975
Q ss_pred --ChhhHHHHHHHH-hhCC
Q 043060 553 --RWDDVATIRTRL-NDKG 568 (707)
Q Consensus 553 --~~~~a~~~~~~m-~~~~ 568 (707)
..++|+++++++ .+.+
T Consensus 331 ~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 358999999998 5543
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.52 E-value=5.8e-12 Score=124.08 Aligned_cols=224 Identities=12% Similarity=-0.008 Sum_probs=145.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHh
Q 043060 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377 (707)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 377 (707)
+..++..+...|...|++++|++.|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---------------------------------------~~~a~~~lg 45 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---------------------------------------ENSGCFNLG 45 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---------------------------------------CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---------------------------------------CHHHHHHHH
Confidence 34455556666666666666666666665521 233344444
Q ss_pred hHHHh----cCCHHHHHHHHhcCCC-CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 043060 378 DMYAK----CGNIKAAEQVFDGMGY-KTLASWNAMISGLAM----HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448 (707)
Q Consensus 378 ~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 448 (707)
.+|.. .|++++|.+.|++... .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 46 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 46 VLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHD 122 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHc
Confidence 55555 5555556555554422 245556666666666 667777777777766643 45566666666666
Q ss_pred ----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 043060 449 ----AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR----AGLFDEAEALLKTMEMKPDAAIWTSLLGACRV---- 516 (707)
Q Consensus 449 ----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~---- 516 (707)
.+++++|..+|+...+. + +...+..+...|.+ .+++++|.+.+++.-...+...+..+...+..
T Consensus 123 ~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 123 GKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp CSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred CCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence 67777777777776653 2 45556666677766 77777777777765212346677777777777
Q ss_pred cCChhHHHHHHHHHHccCCCCchhHHHHHHHhhh----cCChhhHHHHHHHHhhCCC
Q 043060 517 HGRLELGESVAKHLLELEPENPGAYVLLSNMYAG----AGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 569 (707)
.+++++|...++++++.+| +.++..|+.+|.. .|++++|.+.+++..+.|.
T Consensus 199 ~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 199 TKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 7888888888888887765 5677888888888 8888888888888877665
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=1.2e-12 Score=124.42 Aligned_cols=197 Identities=15% Similarity=0.070 Sum_probs=157.8
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLS 444 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 444 (707)
+..++..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+ ..| +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS--IKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChHHHHHHHH
Confidence 56677778888888888888888887653 34567888888888888888888888888887 344 4557778888
Q ss_pred HHhcc-CCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCh
Q 043060 445 ACNHA-GLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRL 520 (707)
Q Consensus 445 a~~~~-g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~ 520 (707)
.+... |++++|...++.+.+ .+..| +...+..+...|...|++++|.+.++++ ...|+ ...|..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 88888 899999998888876 23334 3567788888888999999999888876 33444 77888888889999999
Q ss_pred hHHHHHHHHHHccCC-CCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 521 ELGESVAKHLLELEP-ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 521 ~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
++|...++++++..| .++..+..++..+...|+.++|..+++.+.+..
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 999999999999888 888888888888899999999998888887644
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=4e-13 Score=129.63 Aligned_cols=160 Identities=12% Similarity=0.113 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 481 (707)
.|..+...|...|++++|+..|+++.+. .| +..++..+...+...|++++|...++.+.+. .+.+...+..+...
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 134 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTV 134 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3444444444444444444444444431 22 2223333444444444444444444444331 11233334444444
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHH
Q 043060 482 LGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559 (707)
Q Consensus 482 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 559 (707)
|.+.|++++|.+.++++ ...| +...|..++..+...|++++|...++++++..|+++.++..++.+|...|++++|.+
T Consensus 135 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 214 (243)
T 2q7f_A 135 LVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALE 214 (243)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHH
Confidence 44444444444444443 1122 234444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHhh
Q 043060 560 IRTRLND 566 (707)
Q Consensus 560 ~~~~m~~ 566 (707)
.++++.+
T Consensus 215 ~~~~~~~ 221 (243)
T 2q7f_A 215 MLDKAID 221 (243)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 4444443
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.51 E-value=8.1e-13 Score=121.56 Aligned_cols=166 Identities=13% Similarity=0.125 Sum_probs=136.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 043060 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478 (707)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 478 (707)
+...|..+...|.+.|++++|++.|++.++ +.|+.. ++..+..++.+.|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 456777888888888888888888888887 566554 7777888888888888888888887653 33456677777
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhh
Q 043060 479 VDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 556 (707)
...+...+++++|.+.+++. ...|+ ...|..+...+...|++++|++.++++++++|.++.+|..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88888899999999888875 44454 78888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCC
Q 043060 557 VATIRTRLNDKGM 569 (707)
Q Consensus 557 a~~~~~~m~~~~~ 569 (707)
|.+.+++..+...
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 9999999887543
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=3.5e-13 Score=130.10 Aligned_cols=215 Identities=9% Similarity=0.064 Sum_probs=166.2
Q ss_pred CChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHH
Q 043060 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMI 408 (707)
Q Consensus 332 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li 408 (707)
....++..+...+...|+++.|...+..+.+..+. +..++..+...|.+.|++++|.+.|+++. ..+...|..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE--DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 34556777778888999999999999999987765 78889999999999999999999999763 45778999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCH
Q 043060 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488 (707)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 488 (707)
..|...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999842 335568888899999999999999999999874 344678899999999999999
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhc
Q 043060 489 DEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA 551 (707)
Q Consensus 489 ~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 551 (707)
++|.+.++++ ...|+ ..+|..+...+...|++++|...++++++.+|+++.++..+..+....
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 9999999986 33444 889999999999999999999999999999999988888776655443
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=2.7e-12 Score=126.24 Aligned_cols=227 Identities=7% Similarity=-0.065 Sum_probs=177.2
Q ss_pred HhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh----hhHHHHH
Q 043060 233 ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK--RDV----ISWNVMI 306 (707)
Q Consensus 233 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li 306 (707)
...+......+...|+++.|...+..+++.. +.+..++..+...|.+.|++++|...|++..+ .+. .+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455667778889999999999999999874 44566899999999999999999999998765 222 2488999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHh-hHHHhcCC
Q 043060 307 GGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI-DMYAKCGN 385 (707)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~y~~~g~ 385 (707)
..|...|++++|+..|++..+.. +.+...+..+...+...|+++.|...+..+.+..+. +..++..+. ..|. .++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~-~~~ 157 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT--DPKVFYELGQAYYY-NKE 157 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC--CHHHHHHHHHHHHH-TTC
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC--cHHHHHHHHHHHHH-HHH
Confidence 99999999999999999998864 235578888889999999999999999999888655 778888888 5555 469
Q ss_pred HHHHHHHHhcCC---CCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCCH------hHHHHHHHHHhccCCH
Q 043060 386 IKAAEQVFDGMG---YKTLASWNAMISGLAMHGK---ADKALSLFSRMIGEG-LQPDD------ITFVGVLSACNHAGLL 452 (707)
Q Consensus 386 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~ 452 (707)
+++|.+.|+++. ..+...|..+...+...|+ +++|+..|++..+.. -.|+. .+|..+...+...|++
T Consensus 158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 999999999874 3456788888888888888 888999998887631 11331 2455555556666666
Q ss_pred HHHHHHHHHhHH
Q 043060 453 DIGRQYFNAMIQ 464 (707)
Q Consensus 453 ~~a~~~~~~~~~ 464 (707)
++|.+.|+.+.+
T Consensus 238 ~~A~~~~~~al~ 249 (272)
T 3u4t_A 238 VKADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666666554
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=4.3e-12 Score=120.59 Aligned_cols=207 Identities=14% Similarity=0.106 Sum_probs=150.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhh
Q 043060 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378 (707)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 378 (707)
...|..+...+...|++++|++.|+++.+. .+. +..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----------------------------------~~~--~~~~~~~l~~ 50 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKS-----------------------------------DPK--NELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------CTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----------------------------------Ccc--chHHHHHHHH
Confidence 445666666666666666666666666553 222 4445666666
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHH
Q 043060 379 MYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMH-GKADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLD 453 (707)
Q Consensus 379 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 453 (707)
.|...|++++|.+.|+++. ..+...|..+...|... |++++|+..|+++.+.+..|+ ...+..+...+...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 6677777777777776552 33566777777888888 888888888888877433444 346777778888888888
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043060 454 IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP--DAAIWTSLLGACRVHGRLELGESVAKHL 530 (707)
Q Consensus 454 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 530 (707)
+|...|+.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +...+..+...+...|+.+.|...++.+
T Consensus 131 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 888888888763 2335677888888999999999999998886 3334 4777777888889999999999999999
Q ss_pred HccCCCCchhHHHH
Q 043060 531 LELEPENPGAYVLL 544 (707)
Q Consensus 531 ~~~~p~~~~~~~~l 544 (707)
.+..|+++.....+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 99999887766554
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=6.9e-12 Score=123.51 Aligned_cols=224 Identities=13% Similarity=-0.004 Sum_probs=167.9
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCChhhHHhHH
Q 043060 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKR-DVISWNVMIGGYTH----TSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341 (707)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 341 (707)
+..++..+...|.+.|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------ 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------------ 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------------
Confidence 5567777888888889999999988887654 56678888888888 899999999998887654
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHh----cCCHHHHHHHHhcCCC-CChHHHHHHHHHHHH---
Q 043060 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK----CGNIKAAEQVFDGMGY-KTLASWNAMISGLAM--- 413 (707)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~--- 413 (707)
+...+..+..+|.. .+++++|.+.|++... .+..++..+...|..
T Consensus 73 ---------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~ 125 (273)
T 1ouv_A 73 ---------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKV 125 (273)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSS
T ss_pred ---------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCC
Confidence 23334445555555 6666666666665432 355566777777777
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH----
Q 043060 414 -HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH----AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR---- 484 (707)
Q Consensus 414 -~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~---- 484 (707)
.+++++|+..|++..+.+ +...+..+...+.. .+++++|...|+...+. .+...+..+..+|..
T Consensus 126 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 126 VTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSS
T ss_pred cccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCC
Confidence 788888888888887754 45566666677776 78888888888887763 245677778888888
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCCC
Q 043060 485 AGLFDEAEALLKTM-EMKPDAAIWTSLLGACRV----HGRLELGESVAKHLLELEPEN 537 (707)
Q Consensus 485 ~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~ 537 (707)
.+++++|.+.+++. ... +...+..+...+.. .+++++|.+.++++++.+|++
T Consensus 199 ~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 199 TKNFKEALARYSKACELE-NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 89999999988876 333 37778888888888 899999999999999999864
No 55
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.48 E-value=6.3e-12 Score=133.25 Aligned_cols=343 Identities=11% Similarity=-0.022 Sum_probs=180.6
Q ss_pred HHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCc---hHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 043060 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL---ELGNWVCSLIEGHGLGSNLHVTNALIDMY 278 (707)
Q Consensus 202 li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 278 (707)
+...+.+.|++++|+++|++... .+ +...+..+-..+...|+. ++|...+....+. ++..+..|..++
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~--~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAE--LG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HT---CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH--CC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 45566677777777777777643 33 222233333334445555 6677776666643 444555555544
Q ss_pred HhcC-----CHHHHHHHHHhcCCC-ChhhHHHHHHHHHhcCCHH---HHHHHHHHHhhcCCCCChhhHHhHHHHHhccCC
Q 043060 279 SKCG-----DLVKARDLFESIEKR-DVISWNVMIGGYTHTSDYK---EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA 349 (707)
Q Consensus 279 ~~~g-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 349 (707)
...| +.++|...|++..++ +..++..+...|...+..+ ++.+.+......|. ......+...+...+.
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGT 156 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTC
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCC
Confidence 4444 566777777665543 4446666666666554432 34444444444332 2333344444555554
Q ss_pred chHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcC---CHHHHHHHHhcCC---CCChHHHHHHHHHHHHc----CCHHH
Q 043060 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG---NIKAAEQVFDGMG---YKTLASWNAMISGLAMH----GKADK 419 (707)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~----g~~~~ 419 (707)
++.+......+.+.-... ++..+..|..+|.+.| +.++|.+.|++.. ..+...+..+...|... +++++
T Consensus 157 ~~~~~~~a~~~~~~a~~~-~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNT-TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GGGGHHHHHHHHHHHTTT-CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred cccCHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 444433333222222221 3336667777777777 7777777776553 22333445566666443 56777
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHH-H--hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcC-----CHHHH
Q 043060 420 ALSLFSRMIGEGLQPDDITFVGVLSA-C--NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAG-----LFDEA 491 (707)
Q Consensus 420 A~~~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A 491 (707)
|+..|++.. .| +...+..+... + ...+++++|..+|+...+. | +...+..|..+|. .| ++++|
T Consensus 236 A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 236 AQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 777777765 22 22344444444 2 4567777777777776653 2 5556666666665 44 77777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCCCchhHHHHHHHhhh----cCChhhHHHHHHH
Q 043060 492 EALLKTMEMKPDAAIWTSLLGACRV----HGRLELGESVAKHLLELEPENPGAYVLLSNMYAG----AGRWDDVATIRTR 563 (707)
Q Consensus 492 ~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 563 (707)
.+.|++.- .-+...+..|...|.. ..++++|...++++.+.+ ++.+...|+.+|.. ..+.++|...+++
T Consensus 307 ~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 307 EAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 77777766 4446666666666555 337777777777776643 45567777777764 3467777777777
Q ss_pred HhhCCC
Q 043060 564 LNDKGM 569 (707)
Q Consensus 564 m~~~~~ 569 (707)
..+.|.
T Consensus 384 A~~~g~ 389 (452)
T 3e4b_A 384 AKAQDT 389 (452)
T ss_dssp HHTTCC
T ss_pred HHHCCC
Confidence 777665
No 56
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.48 E-value=3e-12 Score=121.23 Aligned_cols=110 Identities=17% Similarity=0.139 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 043060 415 GKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493 (707)
Q Consensus 415 g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 493 (707)
|++++|+..|++..+ ..|+. ..+..+..++...|++++|...|+++.+. . .+...+..+..+|...|++++|+.
T Consensus 98 g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~ 172 (217)
T 2pl2_A 98 GYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALA 172 (217)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHH
Confidence 444444444444444 23332 23334444444444444444444444432 1 334444444444444444444444
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHH
Q 043060 494 LLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKH 529 (707)
Q Consensus 494 ~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~ 529 (707)
.|++. ...|+ ...+..+...+...|++++|...+++
T Consensus 173 ~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 173 QYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44443 22332 44444444444444444444444443
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=4.9e-13 Score=142.78 Aligned_cols=207 Identities=7% Similarity=-0.036 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCH-HHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043060 352 LGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI-KAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRM 427 (707)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 427 (707)
.+.+.+......... +...+..+...|...|++ ++|++.|++.. ..+...|..+...|...|++++|++.|++.
T Consensus 86 ~al~~l~~~~~~~~~--~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 86 KTLQQMEEVLGSAQV--EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHTTCCC--CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCch--hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444443333332 677788888888888888 88888888753 346778999999999999999999999999
Q ss_pred HHCCCCCCHhHHHHHHHHHhcc---------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc--------CCHHH
Q 043060 428 IGEGLQPDDITFVGVLSACNHA---------GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA--------GLFDE 490 (707)
Q Consensus 428 ~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~ 490 (707)
.+ ..|+...+..+...+... |++++|...|+++.+. .+.+...|..+..+|... |++++
T Consensus 164 l~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 98 678877888889999999 9999999999998873 334678899999999998 99999
Q ss_pred HHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHH
Q 043060 491 AEALLKTM-EMKP----DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564 (707)
Q Consensus 491 A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 564 (707)
|++.|++. ...| +...|..+...+...|++++|.+.++++++++|+++.++..++.++...|++++|.+.+.++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999986 4566 58899999999999999999999999999999999999999999999999999999765444
No 58
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.47 E-value=3.4e-10 Score=124.02 Aligned_cols=415 Identities=9% Similarity=0.021 Sum_probs=269.9
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCC---hHHHHHHHHHHHHhC-CCCChhHH
Q 043060 93 PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA---ISEGKQIHAHVLKLG-LESDPFVH 168 (707)
Q Consensus 93 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g-~~~~~~~~ 168 (707)
.|...|..++..+.+.+.++.+..+|+++... ++.....|..-+..-.+.++ ++.+.++|+..+... ..|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 47778888888888888888899999888875 34455667777777777777 888888888888654 13777788
Q ss_pred HHHHHHHHhCCCh--------hHHHHHHhcC-------CCCCeehHHHHHHHHHh---------CCChhHHHHHHHhCcc
Q 043060 169 TSLINMYAQNGEL--------ESARLVFNKS-------SLRDAVSYTALITGYAS---------RGYLDDARQLFDEMPI 224 (707)
Q Consensus 169 ~~li~~~~~~g~~--------~~A~~~f~~~-------~~~~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~ 224 (707)
...+....+.++. +...++|+.. ...+...|...+..... +++.+.+..+|++.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8777766665543 2334666642 11234567777766542 2345667777777742
Q ss_pred ccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHh-------cCC-
Q 043060 225 REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES-------IEK- 296 (707)
Q Consensus 225 ~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~~- 296 (707)
.....-..+|..........+ ...+..++.+. ..+++.|...+.. +..
T Consensus 223 --iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 223 --QPMDCLESMWQRYTQWEQDVN-QLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp --SCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred --CccHHHHHHHHHHHHHHHhcC-cchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhhc
Confidence 111111122221111111101 11122222111 1122333333322 110
Q ss_pred -------------C--C------hhhHHHHHHHHHhcC-------CHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccC
Q 043060 297 -------------R--D------VISWNVMIGGYTHTS-------DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348 (707)
Q Consensus 297 -------------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 348 (707)
| + ...|...+.---..+ ..+.+..+|++.+... +-+...|.....-+...|
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~ 357 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKN 357 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcC
Confidence 0 0 134555554433332 1234566788877652 335566666677777788
Q ss_pred CchHHH-HHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC-------------C------------ChH
Q 043060 349 ALDLGK-WIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-------------K------------TLA 402 (707)
Q Consensus 349 ~~~~a~-~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------------~------------~~~ 402 (707)
+.+.|. .+++..+...+. +..++..++...-+.|++++|.++|+++.. | ...
T Consensus 358 ~~~~a~r~il~rAi~~~P~--s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 358 TDSTVITKYLKLGQQCIPN--SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp CCTTHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 888996 999999987664 777888899999999999999999987642 2 123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHhc-cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGE-GLQPDDITFVGVLSACNH-AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 480 (707)
.|...+....+.|+.+.|..+|.+.++. +. +....|...+..-.+ .++.+.|..+|+...+.+ +.+...|...++
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~ 512 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHH
Confidence 6888888888899999999999999885 21 122334332222223 355899999999998854 345666778888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 043060 481 LLGRAGLFDEAEALLKTM-EMKP----DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 538 (707)
.....|+.+.|..+|++. ...| ....|..++..-..+|+.+.+..+.+++.+..|+++
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 888999999999999996 3333 257899999999999999999999999999999875
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=6.3e-13 Score=139.14 Aligned_cols=290 Identities=13% Similarity=0.060 Sum_probs=185.9
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHcCCCch---hHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C----ChhhH
Q 043060 235 TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN---LHVTNALIDMYSKCGDLVKARDLFESIEK-----R----DVISW 302 (707)
Q Consensus 235 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~ 302 (707)
.+......+...|++++|...+..+.+...... ..++..+...|...|++++|...|++..+ . ...+|
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 344444455555666666666655555431111 24556666667777777777766665431 1 13456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHH
Q 043060 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIE-PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381 (707)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 381 (707)
..+...|...|++++|+..+++..+.... ++... ...++..+...|.
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------------------------~~~~~~~l~~~~~ 138 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG--------------------------------EARALYNLGNVYH 138 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH--------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccc--------------------------------hHHHHHHHHHHHH
Confidence 66777777777777777777776542100 01000 1234555555566
Q ss_pred hcCC--------------------HHHHHHHHhcCC-------CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 043060 382 KCGN--------------------IKAAEQVFDGMG-------YK--TLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432 (707)
Q Consensus 382 ~~g~--------------------~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 432 (707)
..|+ +++|.+.+++.. .. ...+|..+...|...|++++|+..|++..+...
T Consensus 139 ~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 139 AKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred HcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 6666 666665555431 11 123677788888888888888888888765210
Q ss_pred -CCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC----C
Q 043060 433 -QPD----DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK----LQHYGCMVDLLGRAGLFDEAEALLKTM----E 499 (707)
Q Consensus 433 -~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~ 499 (707)
.++ ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.+.+++. +
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 122 126777788888899999999988877653211112 457778889999999999999998875 1
Q ss_pred CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCC------CCchhHHHHHHHhhhcCChhh
Q 043060 500 MKPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEP------ENPGAYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 500 ~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~ 556 (707)
..++ ..++..+...+...|++++|...+++++++.+ ....++..++.+|...|+...
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 1122 56788899999999999999999999988632 235678888889888887644
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.46 E-value=1.7e-12 Score=135.92 Aligned_cols=199 Identities=15% Similarity=0.051 Sum_probs=156.0
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCCC-----CC----hHHHHHHHHHHHHcCC--------------------HHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-----KT----LASWNAMISGLAMHGK--------------------ADK 419 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~ 419 (707)
...++..+...|...|++++|...|++... .+ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 345677788888888898888888876532 12 3478888999999999 999
Q ss_pred HHHHHHHHHHC----CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHHcCCHHH
Q 043060 420 ALSLFSRMIGE----GLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK----LQHYGCMVDLLGRAGLFDE 490 (707)
Q Consensus 420 A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 490 (707)
|+..+++..+. +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999887652 11222 236778888999999999999999988754222222 2378889999999999999
Q ss_pred HHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC------chhHHHHHHHhhhcCChhh
Q 043060 491 AEALLKTM----EMKPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN------PGAYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 491 A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~ 556 (707)
|.+.+++. +..++ ..++..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999875 11122 5678889999999999999999999999875432 5688899999999999999
Q ss_pred HHHHHHHHhhC
Q 043060 557 VATIRTRLNDK 567 (707)
Q Consensus 557 a~~~~~~m~~~ 567 (707)
|.+.+++..+.
T Consensus 326 A~~~~~~al~~ 336 (406)
T 3sf4_A 326 AMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988753
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.46 E-value=6.5e-13 Score=139.50 Aligned_cols=268 Identities=12% Similarity=0.057 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch----hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHH
Q 043060 269 HVTNALIDMYSKCGDLVKARDLFESIEK--R-DV----ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341 (707)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 341 (707)
..+..+...+...|++++|...|++..+ + +. ..|..+...|...|++++|+..|++..+...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----------- 117 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK----------- 117 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-----------
Confidence 3444556666777777777777766542 2 22 3566666667777777777777766654200
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCC---------ChHHHHHHHHHHH
Q 043060 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK---------TLASWNAMISGLA 412 (707)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~ 412 (707)
+.+..+....++..+...|...|++++|...|++.... ...+|..+...|.
T Consensus 118 --------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 118 --------------------SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp --------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred --------------------HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 00000003345556666666666666666666554211 2235666677777
Q ss_pred HcCC-----------------HHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 043060 413 MHGK-----------------ADKALSLFSRMIGE----GLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470 (707)
Q Consensus 413 ~~g~-----------------~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 470 (707)
..|+ +++|++.+++..+. +-.|. ..++..+...+...|++++|...+++..+...-.+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 7777 77777777765541 11121 22666777778888888888888887765321111
Q ss_pred C----hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC--
Q 043060 471 K----LQHYGCMVDLLGRAGLFDEAEALLKTM-EM---KPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEPE-- 536 (707)
Q Consensus 471 ~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~-- 536 (707)
+ ...+..+...|...|++++|.+.+++. .. ..+ ..++..+...+...|++++|...+++++++.+.
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 2 236777888888999999998888775 11 111 567888889999999999999999999886443
Q ss_pred ----CchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 537 ----NPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 537 ----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
...++..++.+|...|++++|.+.+++..+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 2348889999999999999999999988764
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.45 E-value=2.8e-12 Score=130.12 Aligned_cols=266 Identities=16% Similarity=0.090 Sum_probs=173.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--C-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHH
Q 043060 271 TNALIDMYSKCGDLVKARDLFESIEK--R-D----VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343 (707)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 343 (707)
+......+...|++++|...|++..+ + + ...|..+...|...|++++|++.+++..+..
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 73 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-------------- 73 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--------------
Confidence 33445555666666666666655432 1 2 2345555556666666666666665544310
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC-----CC----hHHHHHHHHHHHHc
Q 043060 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-----KT----LASWNAMISGLAMH 414 (707)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~ 414 (707)
.+.+..+....++..+...|...|++++|...|++... .+ ..++..+...|...
T Consensus 74 -----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 136 (338)
T 3ro2_A 74 -----------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 136 (338)
T ss_dssp -----------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHc
Confidence 00011110344566667777777777777776665421 12 23666777777777
Q ss_pred CC--------------------HHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 043060 415 GK--------------------ADKALSLFSRMIGE----GLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS 469 (707)
Q Consensus 415 g~--------------------~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 469 (707)
|+ +++|++.+++.... +..|. ..++..+...+...|++++|...++...+...-.
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 77 77887777776541 11121 2256677778888889998888888776432111
Q ss_pred CC----hHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 043060 470 PK----LQHYGCMVDLLGRAGLFDEAEALLKTM----EMKPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537 (707)
Q Consensus 470 p~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 537 (707)
++ ...+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...++++++..+..
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 22 236778888899999999999988875 11122 5678888899999999999999999998865432
Q ss_pred ------chhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 538 ------PGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 538 ------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
..++..++.+|.+.|++++|.+.+++..+.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 447889999999999999999999998764
No 63
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.43 E-value=4.1e-12 Score=125.07 Aligned_cols=216 Identities=10% Similarity=-0.153 Sum_probs=127.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHH
Q 043060 302 WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381 (707)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 381 (707)
|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|+++.|...+..+++..+. +..++..+..+|.
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~ 122 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT--YNYAHLNRGIALY 122 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc--ccHHHHHHHHHHH
Confidence 3344444444444444444444444322 112333444444444444444444444444444333 4556677777777
Q ss_pred hcCCHHHHHHHHhcCC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHH
Q 043060 382 KCGNIKAAEQVFDGMG--YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF 459 (707)
Q Consensus 382 ~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 459 (707)
+.|++++|.+.|+++. .++...+...+..+...|++++|+..+++.... .|+......++..+...++.++|...+
T Consensus 123 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~ 200 (275)
T 1xnf_A 123 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGWNIVEFYLGNISEQTLMERL 200 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHHHHHHHHTTSSCHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHhcCHHHHHHHH
Confidence 7777777777777653 222222333334445668889999999877763 333333344677777888888888888
Q ss_pred HHhHHhcCCCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043060 460 NAMIQDYKISPK-----LQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPDAAIWTSLLGACRVHGRLELGESVA 527 (707)
Q Consensus 460 ~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 527 (707)
..+.+ ..|+ ...+..+...|.+.|++++|.+.|+++ ...|+. +.....++...|++++|++.+
T Consensus 201 ~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 201 KADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 87653 2222 467888889999999999999999886 556643 223355667778888887765
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.41 E-value=2.7e-12 Score=134.71 Aligned_cols=270 Identities=13% Similarity=0.023 Sum_probs=194.8
Q ss_pred HhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchh----HHHHHHHHHHHhcCCHHHHHHHHHhcCCC---------Ch
Q 043060 233 ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL----HVTNALIDMYSKCGDLVKARDLFESIEKR---------DV 299 (707)
Q Consensus 233 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~ 299 (707)
...+..+...+...|++++|...+..+++.... +. .++..+...|...|++++|...|++..+. ..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 344556667788999999999999999997532 32 57888999999999999999998876531 34
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhh
Q 043060 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE-PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378 (707)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 378 (707)
.+|..+...|...|++++|+..|++..+.... .+.. ....++..+..
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------------------~~~~~~~~l~~ 174 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL--------------------------------SEGRALYNLGN 174 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH--------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchH--------------------------------HHHHHHHHHHH
Confidence 56788888999999999999999887653100 0000 03334555666
Q ss_pred HHHhcCC-----------------HHHHHHHHhcCC-------CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 043060 379 MYAKCGN-----------------IKAAEQVFDGMG-------YK--TLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432 (707)
Q Consensus 379 ~y~~~g~-----------------~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 432 (707)
.|...|+ +++|.+.+++.. .+ ....|..+...|...|++++|+..|++..+...
T Consensus 175 ~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 175 VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 6666666 666666665432 11 223677788888888888888888888766211
Q ss_pred -CCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHhC-----
Q 043060 433 -QPD----DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP----KLQHYGCMVDLLGRAGLFDEAEALLKTM----- 498 (707)
Q Consensus 433 -~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~----- 498 (707)
.++ ..++..+...+...|++++|...++...+...-.. ....+..+..+|.+.|++++|.+.+++.
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 012 12677788888899999999999887765321111 1456778889999999999999999875
Q ss_pred --CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 043060 499 --EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEP 535 (707)
Q Consensus 499 --~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 535 (707)
+..+. ..++..+...+...|++++|...+++++++.+
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 11111 45788899999999999999999999998876
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.40 E-value=4.2e-12 Score=140.90 Aligned_cols=163 Identities=17% Similarity=0.222 Sum_probs=136.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 043060 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478 (707)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 478 (707)
+..+|+.+...|.+.|++++|++.|++.++ +.|+.. ++..+..++.+.|++++|.+.|++..+. -+-+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 345777888888888888888888888887 667654 7788888888888888888888888763 22356788888
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhh
Q 043060 479 VDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 556 (707)
..+|.+.|++++|++.|++. .+.|+ ...|..+..++...|++++|++.|+++++++|+++.++..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88999999999999988885 56676 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 043060 557 VATIRTRLND 566 (707)
Q Consensus 557 a~~~~~~m~~ 566 (707)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888764
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.40 E-value=7.7e-12 Score=114.92 Aligned_cols=166 Identities=13% Similarity=0.079 Sum_probs=144.8
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLS 444 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 444 (707)
+..+|..|...|.+.|++++|++.|++.. ..+..+|..+...|.+.|++++|+..+++... ..|+. ..+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHH
Confidence 67789999999999999999999999763 45778999999999999999999999999988 45544 46777778
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 043060 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLEL 522 (707)
Q Consensus 445 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 522 (707)
.+...++++.+...+....+. .+.+...+..+..+|.+.|++++|++.|++. ...|+ ..+|..+...+...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 889999999999999998763 3446788899999999999999999999986 55665 8899999999999999999
Q ss_pred HHHHHHHHHccCCCCc
Q 043060 523 GESVAKHLLELEPENP 538 (707)
Q Consensus 523 A~~~~~~~~~~~p~~~ 538 (707)
|+..++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999753
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.39 E-value=8.4e-12 Score=126.52 Aligned_cols=270 Identities=13% Similarity=0.067 Sum_probs=185.8
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHcCCCch---hHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---------ChhhH
Q 043060 235 TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN---LHVTNALIDMYSKCGDLVKARDLFESIEKR---------DVISW 302 (707)
Q Consensus 235 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~ 302 (707)
.+......+...|+++.|...++.+.+...... ..++..+...|...|++++|...|++..+. ...++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 445556677889999999999999998742221 467888999999999999999999876421 24567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHH
Q 043060 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIE-PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381 (707)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 381 (707)
..+...|...|++++|+..+++..+.... ++... ...++..+...|.
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------------------------~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG--------------------------------EARALYNLGNVYH 134 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH--------------------------------HHHHHHHHHHHHH
Confidence 78888899999999999999887653111 11100 1223444555555
Q ss_pred hcCC--------------------HHHHHHHHhcCC-------CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 043060 382 KCGN--------------------IKAAEQVFDGMG-------YK--TLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432 (707)
Q Consensus 382 ~~g~--------------------~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 432 (707)
..|+ +++|.+.+++.. .+ ....+..+...|...|++++|+..+++..+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5555 555555554431 11 123567777778888888888888887765210
Q ss_pred -CCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC-----
Q 043060 433 -QPD----DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK----LQHYGCMVDLLGRAGLFDEAEALLKTM----- 498 (707)
Q Consensus 433 -~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~----- 498 (707)
.++ ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 111 126677777888888888888888877643211122 456777888899999999999988875
Q ss_pred --CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 043060 499 --EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 499 --~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 536 (707)
+..+. ..++..+...+...|++++|...+++++++.+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 11111 457888899999999999999999999987654
No 68
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.38 E-value=1.5e-09 Score=118.90 Aligned_cols=215 Identities=8% Similarity=-0.032 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHH-HHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043060 352 LGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE-QVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRM 427 (707)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 427 (707)
....+++.++...+. ...+|...+..+...|+.++|. ++|++.. ..+...|-..+....+.|++++|.++|+++
T Consensus 327 Rv~~~Ye~aL~~~p~--~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCF--APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 355678888887766 7888999999999999999996 9998763 346677888899999999999999999999
Q ss_pred HHCC---------CCCC------------HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcC
Q 043060 428 IGEG---------LQPD------------DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAG 486 (707)
Q Consensus 428 ~~~g---------~~p~------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 486 (707)
+... -.|+ ...|...+....+.|.++.|+.+|..+.+.. ..+....|...+.+-.+.|
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhC
Confidence 8631 0142 2257777777778899999999999998741 1123344544444444554
Q ss_pred -CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC---CchhHHHHHHHhhhcCChhhHHHH
Q 043060 487 -LFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPE---NPGAYVLLSNMYAGAGRWDDVATI 560 (707)
Q Consensus 487 -~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~ 560 (707)
+.+.|.++|+.. ..-| +...|...+......|+.+.|..+|+++++..|+ ....|..++..-.+.|..+.+.++
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 589999999985 3234 4778889999888999999999999999998873 456788888888999999999999
Q ss_pred HHHHhhCCC
Q 043060 561 RTRLNDKGM 569 (707)
Q Consensus 561 ~~~m~~~~~ 569 (707)
.+++.+.-.
T Consensus 564 ~~R~~~~~P 572 (679)
T 4e6h_A 564 EKRFFEKFP 572 (679)
T ss_dssp HHHHHHHST
T ss_pred HHHHHHhCC
Confidence 999988655
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.38 E-value=4.4e-11 Score=124.16 Aligned_cols=230 Identities=11% Similarity=0.052 Sum_probs=128.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHH
Q 043060 274 LIDMYSKCGDLVKARDLFESIEK-----RD----VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344 (707)
Q Consensus 274 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 344 (707)
....+...|++++|...|++..+ +| ..+|..+...|...|++++|+..+.+..+.-...+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~----------- 177 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE----------- 177 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS-----------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc-----------
Confidence 45556677777777777766543 11 24566666777777777777777766654210000
Q ss_pred hccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC-----CC----hHHHHHHHHHHHHcC
Q 043060 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-----KT----LASWNAMISGLAMHG 415 (707)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g 415 (707)
+. .+....+++.+...|...|++++|.+.|++... .+ ..++..+...|...|
T Consensus 178 ----~~---------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 238 (383)
T 3ulq_A 178 ----AY---------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS 238 (383)
T ss_dssp ----TT---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ----cc---------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC
Confidence 00 000234566677777777777777777765421 11 135666777777777
Q ss_pred CHHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcC---CCCChHHHHHHHHHHHHcCC
Q 043060 416 KADKALSLFSRMIGE----GLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYK---ISPKLQHYGCMVDLLGRAGL 487 (707)
Q Consensus 416 ~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~ 487 (707)
++++|+..|++..+. +..|+ ..++..+...+...|++++|...++...+... .+.....+..+...|...|+
T Consensus 239 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 777777777776651 22132 23566666667777777777777666544211 11111223445555555665
Q ss_pred ---HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 043060 488 ---FDEAEALLKTMEMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLEL 533 (707)
Q Consensus 488 ---~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 533 (707)
+++|+.++++.+..|+ ..++..+...+...|++++|...+++++++
T Consensus 319 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 319 EEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5556666665543333 334445555555555555555555555543
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.37 E-value=4.4e-11 Score=119.96 Aligned_cols=162 Identities=12% Similarity=0.081 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 043060 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI--TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479 (707)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 479 (707)
..|..++..+.+.|++++|..+|+++++ +.|+.. .|..+...+.+.|++++|..+|+.+.+. .+++...|...+
T Consensus 100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a 175 (308)
T 2ond_A 100 LLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAA 175 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 3444444444445555555555555544 333321 3444444444445555555555544431 112222332222
Q ss_pred HHHH-HcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcc---CCC-CchhHHHHHHHhhhcC
Q 043060 480 DLLG-RAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLEL---EPE-NPGAYVLLSNMYAGAG 552 (707)
Q Consensus 480 ~~~~-~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g 552 (707)
.... ..|++++|.++|++. ...|+ ...|..++..+...|++++|..+|+++++. .|+ ....|..++..+.+.|
T Consensus 176 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g 255 (308)
T 2ond_A 176 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 255 (308)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 2211 135555555555443 22222 445555555555555555555555555553 221 3344445555555555
Q ss_pred ChhhHHHHHHHHhhC
Q 043060 553 RWDDVATIRTRLNDK 567 (707)
Q Consensus 553 ~~~~a~~~~~~m~~~ 567 (707)
+.++|..+++++.+.
T Consensus 256 ~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 256 DLASILKVEKRRFTA 270 (308)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 555555555555443
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.35 E-value=3.7e-10 Score=113.21 Aligned_cols=216 Identities=12% Similarity=0.090 Sum_probs=162.7
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHhHHHHHh-------ccCCc-------hHHHHHHHHHHH-hCCCCCcHHHHhHHhhHH
Q 043060 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACA-------YLGAL-------DLGKWIHAYIDK-NHQKLNNVSLWTSLIDMY 380 (707)
Q Consensus 316 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~~li~~y 380 (707)
++|+..|++..... +-+...|......+. ..|+. ++|..+++..++ ..+. +..+|..++..+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~--~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK--NMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc--cHHHHHHHHHHH
Confidence 45666666665532 123334444444333 34665 777777777777 3544 677888999999
Q ss_pred HhcCCHHHHHHHHhcCCC---CChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHh-ccCCHHH
Q 043060 381 AKCGNIKAAEQVFDGMGY---KTLA-SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACN-HAGLLDI 454 (707)
Q Consensus 381 ~~~g~~~~A~~~~~~~~~---~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~-~~g~~~~ 454 (707)
.+.|++++|.++|+++.. .+.. .|..++..+.+.|++++|..+|++..+. .|+. ..|........ ..|++++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999987643 2444 8999999999999999999999999984 3433 34443333322 3799999
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C---CCCC--HHHHHHHHHHHHhcCChhHHHHHHH
Q 043060 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-E---MKPD--AAIWTSLLGACRVHGRLELGESVAK 528 (707)
Q Consensus 455 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~ 528 (707)
|..+|+...+.. +.+...|..++..+.+.|++++|..+|++. . ..|+ ...|..++......|+.+.|..+++
T Consensus 188 A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 188 AFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998743 346788999999999999999999999986 2 3553 6789999999999999999999999
Q ss_pred HHHccCCCCc
Q 043060 529 HLLELEPENP 538 (707)
Q Consensus 529 ~~~~~~p~~~ 538 (707)
++++..|+++
T Consensus 266 ~a~~~~p~~~ 275 (308)
T 2ond_A 266 RRFTAFREEY 275 (308)
T ss_dssp HHHHHTTTTT
T ss_pred HHHHHccccc
Confidence 9999999765
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=6.4e-12 Score=126.07 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=30.2
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 512 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
..+...+.+.++...++++....|..+.++..++.+|.+.|++++|.+++++..+
T Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 252 GKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3334455566666677777777777777788888888888888888888877654
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.32 E-value=5.6e-11 Score=123.38 Aligned_cols=229 Identities=10% Similarity=0.047 Sum_probs=166.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCC-CCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhc
Q 043060 305 MIGGYTHTSDYKEALMLFRQMLQSNI-EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383 (707)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 383 (707)
....+...|++++|+..|++..+.-. .+|... ...++..+...|...
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------------------------~a~~~~~lg~~~~~~ 156 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIE--------------------------------KAEFFFKMSESYYYM 156 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH--------------------------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHH--------------------------------HHHHHHHHHHHHHHc
Confidence 44556677777777777777765310 112111 345567777788888
Q ss_pred CCHHHHHHHHhcCC-----CC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----hHHHHHHHHHhc
Q 043060 384 GNIKAAEQVFDGMG-----YK-----TLASWNAMISGLAMHGKADKALSLFSRMIGEGL-QPDD----ITFVGVLSACNH 448 (707)
Q Consensus 384 g~~~~A~~~~~~~~-----~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~ 448 (707)
|++++|...+++.. .. ...+++.+...|...|++++|+..|++..+..- .++. .++..+...+..
T Consensus 157 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 236 (383)
T 3ulq_A 157 KQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS 236 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 88888777776542 11 134788899999999999999999999876311 1221 378888999999
Q ss_pred cCCHHHHHHHHHHhHHhc---CC-CCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhc
Q 043060 449 AGLLDIGRQYFNAMIQDY---KI-SPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EM-----KPD-AAIWTSLLGACRVH 517 (707)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~---~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~ll~~~~~~ 517 (707)
.|++++|...|++..+-. +. +....++..+...|.+.|++++|.+.+++. .. .|. ...+..+...+...
T Consensus 237 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~ 316 (383)
T 3ulq_A 237 QSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSG 316 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC
Confidence 999999999999887621 22 234567888999999999999999999885 11 222 33456777888888
Q ss_pred CC---hhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 518 GR---LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 518 g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
|+ +++|...+++. ...|.....+..++.+|...|++++|...+++..+
T Consensus 317 ~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 317 PDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88 77777777766 33344556888999999999999999999999865
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.30 E-value=7.3e-11 Score=108.03 Aligned_cols=161 Identities=17% Similarity=0.138 Sum_probs=97.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH
Q 043060 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484 (707)
Q Consensus 405 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 484 (707)
..+...+...|++++|+..|+++.+. .+.+..++..+...+...|++++|...++.+.+. .+.+...+..+...|..
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHH
Confidence 33344444444444444444444331 1112234444444444555555555555544432 12244555556666666
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHH
Q 043060 485 AGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562 (707)
Q Consensus 485 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 562 (707)
.|++++|.+.++++ ...| +...|..++..+...|++++|...++++++..|.++.++..++.+|...|++++|.+.++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666654 2223 466777777788888888888888888888888888888888888888888888888888
Q ss_pred HHhhCC
Q 043060 563 RLNDKG 568 (707)
Q Consensus 563 ~m~~~~ 568 (707)
+..+..
T Consensus 169 ~~~~~~ 174 (186)
T 3as5_A 169 KANELD 174 (186)
T ss_dssp HHHHHH
T ss_pred HHHHcC
Confidence 776543
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.30 E-value=1.2e-09 Score=112.81 Aligned_cols=196 Identities=16% Similarity=0.055 Sum_probs=137.5
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCC-------C---C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--C--CH
Q 043060 372 LWTSLIDMYAKCGNIKAAEQVFDGMG-------Y---K-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ--P--DD 436 (707)
Q Consensus 372 ~~~~li~~y~~~g~~~~A~~~~~~~~-------~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~ 436 (707)
.+..+...|...|++++|.+.+++.. . + ....+..+...+...|++++|...+++.....-. + ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 35566777778888888877776542 1 1 1235666777888889999999999888763211 1 12
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HH
Q 043060 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG-----CMVDLLGRAGLFDEAEALLKTM-EMKPD-----AA 505 (707)
Q Consensus 437 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~ 505 (707)
.++..+...+...|++++|...++..............+. ..+..+...|++++|...+++. ...|. ..
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 3566777788889999999999988765322211111222 2344577899999999999986 22221 23
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCC-----C-chhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 506 IWTSLLGACRVHGRLELGESVAKHLLELEPE-----N-PGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 506 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
.+..+...+...|++++|...++++++..+. + ..++..++.++...|+.++|...+++..+.
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5677888899999999999999998875432 1 236778899999999999999999887653
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.29 E-value=1.9e-10 Score=109.59 Aligned_cols=203 Identities=9% Similarity=0.020 Sum_probs=111.9
Q ss_pred ChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHH
Q 043060 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMIS 409 (707)
Q Consensus 333 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 409 (707)
|...+......+...|++++|...+..+++..+.. +...+..+..+|.+.|++++|.+.|++.. ..+...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ-DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 33455555555666666666666666666655422 44445556666666666666666666542 223445666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHh--------HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC---hHHHHHH
Q 043060 410 GLAMHGKADKALSLFSRMIGEGLQPDDI--------TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK---LQHYGCM 478 (707)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 478 (707)
.|...|++++|+..|++..+ ..|+.. .|..+...+...|++++|...|+.+.+ ..|+ ...|..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 66666666666666666665 344322 344445555566666666666666543 2333 3445555
Q ss_pred HHHHHHcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh
Q 043060 479 VDLLGRAGLF--DEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548 (707)
Q Consensus 479 i~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 548 (707)
..+|...|+. ++|..+ . ..+...+..+. ....+.+++|...++++++++|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 5555444432 111111 0 11222222222 22344568888888888888888887777666554
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=1.1e-10 Score=111.46 Aligned_cols=189 Identities=12% Similarity=-0.018 Sum_probs=96.1
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCC---C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMG---Y-KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVL 443 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll 443 (707)
++..+..+...|.+.|++++|.+.|++.. . ++...|..+..++...|++++|+..|++..+ ..|+.. .+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 44555555556666666666666655432 1 4444554555555566666666666666555 444433 455555
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHHHHHHHH
Q 043060 444 SACNHAGLLDIGRQYFNAMIQDYKISPKL-------QHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD---AAIWTSLLG 512 (707)
Q Consensus 444 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~ 512 (707)
..+...|++++|...|+...+.. +.+. ..|..+...+.+.|++++|++.|++. ...|+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 55555566666666655555421 1122 23444555555555555555555553 33443 234444444
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
.+... +...++++..+.+.++..|..+ .....|.+++|...+++..+..
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 44322 2333444444444443333222 2233344578888888777643
No 78
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.26 E-value=1.1e-10 Score=124.35 Aligned_cols=179 Identities=10% Similarity=0.026 Sum_probs=158.1
Q ss_pred HHHHHHHHhcC---CCCChHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHH
Q 043060 386 IKAAEQVFDGM---GYKTLASWNAMISGLAMHGKA-DKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQYFN 460 (707)
Q Consensus 386 ~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 460 (707)
++++...+++. ...+...|..+...|...|++ ++|++.|++..+ ..|+ ...+..+..++...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55666666554 334778899999999999999 999999999998 5666 4589999999999999999999999
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHHc---------CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc--------CChh
Q 043060 461 AMIQDYKISPKLQHYGCMVDLLGRA---------GLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVH--------GRLE 521 (707)
Q Consensus 461 ~~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~--------g~~~ 521 (707)
.+.+ ..|+...+..+..+|... |++++|++.+++. ...|+ ...|..+..++... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9874 457788899999999999 9999999999986 55565 88999999999999 9999
Q ss_pred HHHHHHHHHHccCC---CCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 522 LGESVAKHLLELEP---ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 522 ~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+|+..++++++++| .++.+|..++.+|...|++++|.+.+++..+...
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999 9999999999999999999999999999987544
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.25 E-value=1.6e-09 Score=112.02 Aligned_cols=163 Identities=10% Similarity=0.016 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCCChHH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGE----GLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDY---KISPKLQH 474 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~ 474 (707)
+++.+...|...|++++|++.|++..+. +-.+. ..++..+...+...|++++|...|++..+.. +.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 4455555555555555555555554431 10111 1245555556666666666666665554311 11122445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHHccCCCCchhHHHH
Q 043060 475 YGCMVDLLGRAGLFDEAEALLKTM----EM--KPD-AAIWTSLLGACRVHGR---LELGESVAKHLLELEPENPGAYVLL 544 (707)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l 544 (707)
+..+...|.+.|++++|.+.+++. .. .|. ...+..+...+...++ +++|...+++. ...|.....+..+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHH
Confidence 556666666666666666666653 11 122 2334444444555555 55555555441 1223333455667
Q ss_pred HHHhhhcCChhhHHHHHHHHhh
Q 043060 545 SNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 545 ~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
+..|...|++++|...+++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777666643
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=3.7e-10 Score=103.25 Aligned_cols=168 Identities=14% Similarity=0.082 Sum_probs=144.8
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLS 444 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 444 (707)
....+..+...|...|++++|.+.|+++.. .+...|..+...+...|++++|+..++++.+. .| +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 84 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 345677888899999999999999998854 36778999999999999999999999999884 44 4568888889
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 043060 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLEL 522 (707)
Q Consensus 445 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 522 (707)
.+...|++++|.+.++.+.+. .+.+...+..+...|...|++++|.+.++++ ...| +..+|..+...+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999874 3457788889999999999999999999986 3344 47899999999999999999
Q ss_pred HHHHHHHHHccCCCCchh
Q 043060 523 GESVAKHLLELEPENPGA 540 (707)
Q Consensus 523 A~~~~~~~~~~~p~~~~~ 540 (707)
|...++++++..|+++..
T Consensus 163 A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 163 ALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHHcCCCchhh
Confidence 999999999998877643
No 81
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.22 E-value=1e-10 Score=117.26 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=35.7
Q ss_pred HHHHHHcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 043060 479 VDLLGRAGLFDEAEALLKTME-MKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 536 (707)
...+...+.+.+|...++... ..|+ ..+|..+...+...|++++|.+.+++++++.|+
T Consensus 251 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 251 KGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 344555666667777777653 3344 678999999999999999999999999988774
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.22 E-value=8.4e-10 Score=114.24 Aligned_cols=306 Identities=11% Similarity=0.039 Sum_probs=217.6
Q ss_pred CCCCCHhhHHHHHHHH--hccCCchHHHHHHHHHHHcC--C--CchhHHHHHHHHHH-----HhcCCHH------HHHHH
Q 043060 228 NFVPNESTVVTVLSAC--AHMGSLELGNWVCSLIEGHG--L--GSNLHVTNALIDMY-----SKCGDLV------KARDL 290 (707)
Q Consensus 228 ~~~p~~~t~~~ll~~~--~~~g~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~~-----~~~g~~~------~A~~~ 290 (707)
.+.|+...-..+-..| ...+++++|.++.+.+.+.. + ..+...|-.|+..- ....... .....
T Consensus 5 ~~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~ 84 (378)
T 3q15_A 5 QAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL 84 (378)
T ss_dssp -CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHH
Confidence 4556665555666666 78899999999999887642 2 33445555555431 1111122 11144
Q ss_pred HHhcC---CC-C-hh---hHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CCC----hhhHHhHHHHHhccCCchHHHHHH
Q 043060 291 FESIE---KR-D-VI---SWNVMIGGYTHTSDYKEALMLFRQMLQSNI-EPN----DVTFLSVLPACAYLGALDLGKWIH 357 (707)
Q Consensus 291 ~~~~~---~~-~-~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~ 357 (707)
++.+. .+ + .. .|......+...|++++|+..|++..+... .++ ..++..+...+...|+++.|...+
T Consensus 85 l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~ 164 (378)
T 3q15_A 85 LETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI 164 (378)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 44432 22 1 11 233345567889999999999999876421 123 345667778889999999999999
Q ss_pred HHHHHhCCCCC-----cHHHHhHHhhHHHhcCCHHHHHHHHhcCCC-----CC----hHHHHHHHHHHHHcCCHHHHHHH
Q 043060 358 AYIDKNHQKLN-----NVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-----KT----LASWNAMISGLAMHGKADKALSL 423 (707)
Q Consensus 358 ~~~~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~ 423 (707)
....+.....+ ...+++.+...|...|++++|.+.|++... .+ ..+++.+...|...|++++|+..
T Consensus 165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 98877532211 355788899999999999999999987632 22 24788899999999999999999
Q ss_pred HHHHHH-----CCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC---CChHHHHHHHHHHHHcCC---HHHHH
Q 043060 424 FSRMIG-----EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS---PKLQHYGCMVDLLGRAGL---FDEAE 492 (707)
Q Consensus 424 ~~~m~~-----~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~---~~~A~ 492 (707)
|++..+ .. +....++..+...+.+.|++++|..+++...+...-. .....+..+...|...|+ +++|+
T Consensus 245 ~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al 323 (378)
T 3q15_A 245 FQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLL 323 (378)
T ss_dssp HHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 999887 32 2224578888999999999999999999987753322 223456677777888888 99999
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 043060 493 ALLKTMEMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELE 534 (707)
Q Consensus 493 ~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 534 (707)
..+++.+..|+ ...+..+...|...|++++|...++++++..
T Consensus 324 ~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 324 SYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 99999765555 5577789999999999999999999988653
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.18 E-value=2.3e-10 Score=127.00 Aligned_cols=163 Identities=17% Similarity=0.182 Sum_probs=143.6
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLS 444 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~ 444 (707)
+...++.|...|.+.|++++|++.|++.. ..+..+|+.+...|.+.|++++|++.|++.++ +.|+.. .|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 67789999999999999999999999763 45678999999999999999999999999998 677754 8899999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 043060 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLEL 522 (707)
Q Consensus 445 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 522 (707)
++...|++++|.+.|++..+. -+-+...|..+..+|.+.|++++|++.|++. .+.|+ ...|..++..+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999998863 2336788999999999999999999999986 66776 8899999999999999999
Q ss_pred HHHHHHHHHccCC
Q 043060 523 GESVAKHLLELEP 535 (707)
Q Consensus 523 A~~~~~~~~~~~p 535 (707)
|.+.+++++++.|
T Consensus 164 A~~~~~kal~l~~ 176 (723)
T 4gyw_A 164 YDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCh
Confidence 9999999987644
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.16 E-value=1.3e-09 Score=106.30 Aligned_cols=203 Identities=11% Similarity=-0.016 Sum_probs=119.3
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCCC--C-C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HhH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGY--K-T---LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD----DIT 438 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t 438 (707)
+...+..+...+.+.|++++|...|+++.. | + ...|..+..+|.+.|++++|+..|++.++ ..|+ ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ--IYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--HCCCCchhHHH
Confidence 444555555555566666666666655432 1 2 34455555555666666666666666555 2231 123
Q ss_pred HHHHHHHHhc--------cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 043060 439 FVGVLSACNH--------AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510 (707)
Q Consensus 439 ~~~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 510 (707)
+..+..++.. .|++++|...|+.+.+.+.- +......+.......+.+ ...+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN--HELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT--CTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC--chhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 3444444444 55555555555555543211 111111111100000000 1124667
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCC---chhHHHHHHHhhhc----------CChhhHHHHHHHHhhCCCccCCcccE
Q 043060 511 LGACRVHGRLELGESVAKHLLELEPEN---PGAYVLLSNMYAGA----------GRWDDVATIRTRLNDKGMKKVPGCSS 577 (707)
Q Consensus 511 l~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~ 577 (707)
...+...|++++|+..++++++..|++ +.++..++.+|... |++++|...++++.+...
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p-------- 226 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP-------- 226 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC--------
Confidence 888999999999999999999999984 45889999999877 999999999999987544
Q ss_pred EeECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHH
Q 043060 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEK 613 (707)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 613 (707)
.+|...+....+.++...+.+
T Consensus 227 ---------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ---------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ---------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CChHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666553
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.13 E-value=4.7e-10 Score=110.48 Aligned_cols=222 Identities=15% Similarity=0.168 Sum_probs=159.3
Q ss_pred hccCCchHHHHHHHHHHHh-----CCC-CCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC--------CC---ChHHHHHH
Q 043060 345 AYLGALDLGKWIHAYIDKN-----HQK-LNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG--------YK---TLASWNAM 407 (707)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~-----~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--------~~---~~~~~~~l 407 (707)
...|+++.|...++..++. +.. +....++..+...|...|++++|...|+++. .. ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4568888888888877663 111 2256788899999999999999999998763 11 34578889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC------CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhc-----CCCC-ChHH
Q 043060 408 ISGLAMHGKADKALSLFSRMIGE------GLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDY-----KISP-KLQH 474 (707)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~ 474 (707)
...|...|++++|+..|++..+. .-.|+ ..++..+...+...|++++|..+|+++.+.. ...| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998873 11233 3478888889999999999999999887641 1122 3567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC----------CCCCC-HHHHHHHHHHHHhcCChh------HHHHHHHHHHccCCCC
Q 043060 475 YGCMVDLLGRAGLFDEAEALLKTM----------EMKPD-AAIWTSLLGACRVHGRLE------LGESVAKHLLELEPEN 537 (707)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~----------~~~p~-~~~~~~ll~~~~~~g~~~------~A~~~~~~~~~~~p~~ 537 (707)
+..+..+|.+.|++++|.+.+++. ...+. ...|..+.......+... .+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999999875 12333 445555554444444333 2333333332334556
Q ss_pred chhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 538 PGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
+.++..++.+|...|++++|.+++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67899999999999999999999998875
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.10 E-value=1.9e-10 Score=101.45 Aligned_cols=140 Identities=11% Similarity=0.054 Sum_probs=100.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCH
Q 043060 410 GLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488 (707)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 488 (707)
.+...|++++|+..+++... ..|+.. .+..+...|...|++++|.+.|+...+. .+-+...|..+..+|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 34445666666666666554 334332 4555666677777777777777766652 223566777788888888888
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHH-HHHHHccCCCCchhHHHHHHHhhhcCC
Q 043060 489 DEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESV-AKHLLELEPENPGAYVLLSNMYAGAGR 553 (707)
Q Consensus 489 ~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 553 (707)
++|+..|++. .+.|+ ..+|..+...+.+.|+.++|.+. ++++++++|+++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888775 55665 78899999999999998776654 689999999999999999988888775
No 87
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.09 E-value=6.7e-09 Score=98.61 Aligned_cols=182 Identities=11% Similarity=-0.017 Sum_probs=111.7
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCCC--C-C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh----H
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGY--K-T---LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI----T 438 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 438 (707)
+...+..+...+.+.|++++|...|+++.. | + ...+..+..+|.+.|++++|+..|+++.+ ..|+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHH
Confidence 344555566667777777777777776532 2 1 23566667777777777777777777776 344432 2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHH----------
Q 043060 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAI---------- 506 (707)
Q Consensus 439 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~---------- 506 (707)
+..+..++...|.. .+ ..|..+...+...|++++|...|+++ ...|+ ...
T Consensus 81 ~~~~g~~~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~ 142 (225)
T 2yhc_A 81 MYMRGLTNMALDDS-----AL-------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFL 142 (225)
T ss_dssp HHHHHHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhh-----hh-------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH
Confidence 33333333321100 00 00001111112234455555555443 22233 111
Q ss_pred -------HHHHHHHHHhcCChhHHHHHHHHHHccCCCCc---hhHHHHHHHhhhcCChhhHHHHHHHHhhCCCc
Q 043060 507 -------WTSLLGACRVHGRLELGESVAKHLLELEPENP---GAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570 (707)
Q Consensus 507 -------~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 570 (707)
...+...+...|+++.|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 143 KDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 13456678899999999999999999999876 57999999999999999999999999887764
No 88
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.08 E-value=2.2e-08 Score=103.25 Aligned_cols=165 Identities=14% Similarity=0.034 Sum_probs=106.7
Q ss_pred HHHhHHhhHHHhcCCHHHHHHHHhcCC----CC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHH-
Q 043060 371 SLWTSLIDMYAKCGNIKAAEQVFDGMG----YK----TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFV- 440 (707)
Q Consensus 371 ~~~~~li~~y~~~g~~~~A~~~~~~~~----~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~- 440 (707)
..+..+...|...|++++|...+++.. .. ...+|..+...+...|++++|...+++.....-.++. ..+.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 345556677777777777777776541 11 1245667777788888888888888887653112111 1111
Q ss_pred ----HHHHHHhccCCHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCH-HH
Q 043060 441 ----GVLSACNHAGLLDIGRQYFNAMIQDYKISP--KLQHYGCMVDLLGRAGLFDEAEALLKTM-------EMKPDA-AI 506 (707)
Q Consensus 441 ----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~ 506 (707)
..+..+...|++++|...++.........+ ....+..+...+...|++++|.+.+++. +..++. .+
T Consensus 216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 295 (373)
T 1hz4_A 216 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 295 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHH
Confidence 223346678888888888887754211011 1224567778888889999988888775 111122 36
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 043060 507 WTSLLGACRVHGRLELGESVAKHLLELEP 535 (707)
Q Consensus 507 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 535 (707)
+..+..++...|+.++|...+++++++.+
T Consensus 296 ~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 296 LLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 66677788889999999999998887653
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.06 E-value=2.9e-09 Score=105.62 Aligned_cols=211 Identities=12% Similarity=-0.019 Sum_probs=121.0
Q ss_pred CHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHH
Q 043060 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362 (707)
Q Consensus 283 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 362 (707)
++++|...|++. ...|...|++++|++.|.+..+... ..|+.
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~---------------~~~~~------------ 73 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQK---------------KAGNE------------ 73 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHH---------------HTTCH------------
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHH---------------HhCCH------------
Confidence 477777666553 5667777777777777776654210 00000
Q ss_pred hCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC-----CC----hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCC
Q 043060 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-----KT----LASWNAMISGLAMH-GKADKALSLFSRMIGEGL 432 (707)
Q Consensus 363 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~ 432 (707)
.....+++.+..+|.+.|++++|...|++... .+ ..+|+.+...|... |++++|+..|++..+ +
T Consensus 74 ----~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~ 147 (292)
T 1qqe_A 74 ----DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE--W 147 (292)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--H
T ss_pred ----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--H
Confidence 00133455666666666666666666554421 11 23566677777775 777777777777765 2
Q ss_pred CCC-------HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 043060 433 QPD-------DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL-----QHYGCMVDLLGRAGLFDEAEALLKTM-E 499 (707)
Q Consensus 433 ~p~-------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~ 499 (707)
.|+ ..++..+...+...|++++|...|+.+.+...-.+.. ..|..+..+|...|++++|...+++. .
T Consensus 148 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 221 2356666777777777777777777776532111111 14556666777777777777777775 4
Q ss_pred CCCCH------HHHHHHHHHHH--hcCChhHHHHHHHHHHccCCCC
Q 043060 500 MKPDA------AIWTSLLGACR--VHGRLELGESVAKHLLELEPEN 537 (707)
Q Consensus 500 ~~p~~------~~~~~ll~~~~--~~g~~~~A~~~~~~~~~~~p~~ 537 (707)
+.|+. ..+..++.++. ..+++++|...|+++.+++|.+
T Consensus 228 l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 228 EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 44431 12344455553 3456777777777776666644
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.06 E-value=7.5e-08 Score=93.60 Aligned_cols=176 Identities=9% Similarity=0.010 Sum_probs=110.2
Q ss_pred HHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 043060 389 AEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 389 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
|...|++.. .++..++..+..++...|++++|++++.+.+..|-.++. ..+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 455555443 234445556666777777777777777776654332233 3566666777777777777777777754
Q ss_pred hcCCCC-----ChHHHHHHHHH--HHHcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcc-
Q 043060 465 DYKISP-----KLQHYGCMVDL--LGRAG--LFDEAEALLKTM-EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL- 533 (707)
Q Consensus 465 ~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~- 533 (707)
. .| +..+...|..+ ....| +..+|..+|+++ ...|+..+-..++.++...|++++|++.++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2 34 23444444444 22333 777788888776 33354333334444677788888888888777665
Q ss_pred ---------CCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 534 ---------EPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 534 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+|+++.++..++.+....|+ +|.++++++.+..+
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 47777777777777777776 77788887776544
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=1.5e-09 Score=107.67 Aligned_cols=188 Identities=7% Similarity=-0.017 Sum_probs=139.2
Q ss_pred hhHHHhcCCHHHHHHHHhcCCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-------HhHHH
Q 043060 377 IDMYAKCGNIKAAEQVFDGMGY-----KT----LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD-------DITFV 440 (707)
Q Consensus 377 i~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~t~~ 440 (707)
+..|...|++++|.+.|++... .+ ..+|+.+...|...|++++|+..|++..+ +.|+ ..++.
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~~~~g~~~~~a~~~~ 121 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ--IFTHRGQFRRGANFKF 121 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHcCCHHHHHHHHH
Confidence 5567788999999888876521 12 45889999999999999999999999876 2221 24788
Q ss_pred HHHHHHhcc-CCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---H-----HH
Q 043060 441 GVLSACNHA-GLLDIGRQYFNAMIQDYKISPK----LQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD---A-----AI 506 (707)
Q Consensus 441 ~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~-----~~ 506 (707)
.+...|... |++++|...|++..+...-..+ ...+..+...|.+.|++++|++.|++. ...|+ . ..
T Consensus 122 ~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 888899996 9999999999988764211111 356888999999999999999999986 33332 1 15
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCCchh-----HHHHHHHhh--hcCChhhHHHHHHHHhh
Q 043060 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGA-----YVLLSNMYA--GAGRWDDVATIRTRLND 566 (707)
Q Consensus 507 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~m~~ 566 (707)
|..++..+...|+++.|...++++++++|..... +..++..|. ..+++++|.+.|+++.+
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 7788888999999999999999999999975543 345566664 56778888887766543
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.03 E-value=6.4e-09 Score=116.03 Aligned_cols=168 Identities=11% Similarity=-0.039 Sum_probs=140.1
Q ss_pred HhcCCHHHHHHHHhcCC-----------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhc
Q 043060 381 AKCGNIKAAEQVFDGMG-----------YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNH 448 (707)
Q Consensus 381 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~ 448 (707)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..+ ..|+. ..+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 67889999999888765 34667888889999999999999999999988 56654 478888888999
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 043060 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESV 526 (707)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~ 526 (707)
.|++++|...|+++.+. .+.+...|..+..+|.+.|++++ ++.|++. ...|+ ...|..+..++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998863 23366788889999999999999 9888886 55665 78899999999999999999999
Q ss_pred HHHHHccCCCCchhHHHHHHHhhhcCC
Q 043060 527 AKHLLELEPENPGAYVLLSNMYAGAGR 553 (707)
Q Consensus 527 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 553 (707)
++++++++|++..++..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999988666
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.02 E-value=5.3e-09 Score=102.82 Aligned_cols=165 Identities=15% Similarity=0.128 Sum_probs=99.5
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCCC----------C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------C
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGY----------K-TLASWNAMISGLAMHGKADKALSLFSRMIGE------G 431 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 431 (707)
...++..+...|...|++++|.+.|++... + ...+|..+...|...|++++|+..|+++.+. +
T Consensus 84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 163 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP 163 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344566666666677777777666665421 1 2346677777777778888888877777663 1
Q ss_pred CCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHHhc------CCCC-ChHHHHHHHHHHHHcC------CHHHHHHHHHh
Q 043060 432 LQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQDY------KISP-KLQHYGCMVDLLGRAG------LFDEAEALLKT 497 (707)
Q Consensus 432 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p-~~~~~~~li~~~~~~g------~~~~A~~~~~~ 497 (707)
-.|+. .++..+...+...|++++|..+++.+.+.. ...+ ....|..+...+...+ .+.++...++.
T Consensus 164 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (283)
T 3edt_B 164 DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKA 243 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------C
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Confidence 13332 366777778888888888888888776531 1122 2233333333333322 24444555555
Q ss_pred CC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 043060 498 ME-MKPD-AAIWTSLLGACRVHGRLELGESVAKHLLEL 533 (707)
Q Consensus 498 ~~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 533 (707)
.. ..|+ ..++..+...+...|++++|...++++++.
T Consensus 244 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 244 CKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 43 2233 667888999999999999999999998875
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.00 E-value=5.6e-09 Score=89.46 Aligned_cols=125 Identities=20% Similarity=0.289 Sum_probs=78.0
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 043060 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGR 519 (707)
Q Consensus 442 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 519 (707)
+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|.+.++++ ...| +...|..+...+...|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence 333344444444444444444331 1123344445555555556666666655554 2223 35667777777778888
Q ss_pred hhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 520 LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 520 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
+++|...++++++..|.++.++..++.+|...|++++|.+.++++.+..
T Consensus 85 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888777788888888888888888888887776543
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.00 E-value=5.2e-09 Score=103.47 Aligned_cols=175 Identities=14% Similarity=0.012 Sum_probs=139.4
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHH
Q 043060 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 386 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
.+...+.+......+...+..+...+.+.|++++|+..|++..+ ..|+.. .+..+...+...|++++|...++.+..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 33444455554445556777788888899999999999999988 567554 778888899999999999999998865
Q ss_pred hcCCCCChHHHHHH-HHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC--ch
Q 043060 465 DYKISPKLQHYGCM-VDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN--PG 539 (707)
Q Consensus 465 ~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~--~~ 539 (707)
. .|+....... ...+.+.|+.++|.+.+++. ...|+ ...+..+...+...|++++|...++++++.+|++ ..
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 3 3554433332 33466788888898888875 45565 8899999999999999999999999999999987 88
Q ss_pred hHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 540 AYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 540 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
++..|+.+|...|+.++|...+++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999999999887754
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.99 E-value=1.5e-08 Score=98.75 Aligned_cols=204 Identities=12% Similarity=0.046 Sum_probs=148.4
Q ss_pred ChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCc-HHHHhHHhhHHHhcCCHHHHHHHHhcCCC--C----ChHHHH
Q 043060 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNN-VSLWTSLIDMYAKCGNIKAAEQVFDGMGY--K----TLASWN 405 (707)
Q Consensus 333 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~----~~~~~~ 405 (707)
+...+......+...|+++.|...+..+++..+..+. ..++..+..+|.+.|++++|...|++... | ....+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 4456666777888999999999999999998766311 67888999999999999999999998742 1 234677
Q ss_pred HHHHHHHH--------cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 043060 406 AMISGLAM--------HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477 (707)
Q Consensus 406 ~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 477 (707)
.+..++.. .|++++|+..|++.++ ..|+..... .+...+..+... ....+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~-------------~a~~~~~~~~~~-----~~~~~~~ 153 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVD-------------DATQKIRELRAK-----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHH-------------HHHHHHHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHH-------------HHHHHHHHHHHH-----HHHHHHH
Confidence 88888888 9999999999999998 556543211 111111111110 1123556
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CChhHHHHHHHHHHccCCCCch---
Q 043060 478 MVDLLGRAGLFDEAEALLKTM-EMKPD----AAIWTSLLGACRVH----------GRLELGESVAKHLLELEPENPG--- 539 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~--- 539 (707)
+...|.+.|++++|+..|+++ ...|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 233 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT 233 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence 788899999999999999886 33343 45777788888766 8899999999999999998864
Q ss_pred hHHHHHHHhhhcCChhh
Q 043060 540 AYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 540 ~~~~l~~~~~~~g~~~~ 556 (707)
+...+..++.+.|++++
T Consensus 234 a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 234 AEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 34455555555554444
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.94 E-value=2.1e-09 Score=94.68 Aligned_cols=124 Identities=11% Similarity=-0.014 Sum_probs=103.3
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 043060 442 VLSACNHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHG 518 (707)
Q Consensus 442 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g 518 (707)
|...+...|++++|++.++.... ..| +...+-.+..+|.+.|++++|++.|++. .+.|+ ..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34456677899999999988753 333 3345667899999999999999999986 66676 889999999999999
Q ss_pred ChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHH-HHHHhhCC
Q 043060 519 RLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATI-RTRLNDKG 568 (707)
Q Consensus 519 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~~ 568 (707)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+..
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999987776 47776643
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.92 E-value=3.4e-08 Score=84.43 Aligned_cols=131 Identities=18% Similarity=0.289 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 482 (707)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677777888888888888888887732 224456777777888888888888888888763 234566777888888
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 043060 483 GRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 483 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 536 (707)
.+.|++++|.+.++++ ...| +..+|..++..+...|++++|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8899999999888876 3334 4778888899999999999999999999988875
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.90 E-value=1.7e-07 Score=91.14 Aligned_cols=241 Identities=11% Similarity=0.024 Sum_probs=164.2
Q ss_pred HHhcCCHHHHHHHHHhcCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHH
Q 043060 278 YSKCGDLVKARDLFESIEKRDV-ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356 (707)
Q Consensus 278 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 356 (707)
..-.|.+..++.-...+...+. ..-.-+..+|...|+++.. ..-.|....+..+. .+...+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc----HHHH
Confidence 4456777777776665543322 2222344677777766531 11223322322222 233322 4556
Q ss_pred HHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 043060 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-----KTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431 (707)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 431 (707)
++..+..+.. +......+..+|...|++++|++++.+... .+...+-.++..+.+.|+.+.|.+.+++|.+
T Consensus 89 l~~l~~~~~~--~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~-- 164 (310)
T 3mv2_B 89 LENLLKDKQN--SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN-- 164 (310)
T ss_dssp HHHTTTTSCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHhcCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 6666555433 455556888999999999999999988622 3556788889999999999999999999988
Q ss_pred CCC-----CHhHHHHHHHHH--hccC--CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-
Q 043060 432 LQP-----DDITFVGVLSAC--NHAG--LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EM- 500 (707)
Q Consensus 432 ~~p-----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~- 500 (707)
..| +..+...+..++ ...| ++++|..+|+++.+. .|+......+..++.+.|++++|.+.++.+ ..
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 678 356666676663 3334 899999999998753 355334444555899999999999999865 21
Q ss_pred ---------CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhH
Q 043060 501 ---------KPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541 (707)
Q Consensus 501 ---------~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 541 (707)
.|+ +.+...++......|+ .|.++++++.+..|++|.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 255 6777677766667786 88999999999999987544
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.90 E-value=7.4e-09 Score=94.00 Aligned_cols=77 Identities=14% Similarity=0.080 Sum_probs=62.7
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC--chhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 490 EAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN--PGAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 490 ~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
+|++.+++. ...|+ ...+..+...+...|++++|...++++++.+|+. +.++..++.+|...|+.++|...+++..
T Consensus 92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 92 PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 355555554 34565 7888889999999999999999999999999864 5689999999999999999999888765
Q ss_pred h
Q 043060 566 D 566 (707)
Q Consensus 566 ~ 566 (707)
.
T Consensus 172 ~ 172 (176)
T 2r5s_A 172 Y 172 (176)
T ss_dssp H
T ss_pred H
Confidence 4
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.89 E-value=1.2e-08 Score=111.85 Aligned_cols=159 Identities=11% Similarity=0.044 Sum_probs=126.2
Q ss_pred cCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHHH
Q 043060 383 CGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQY 458 (707)
Q Consensus 383 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 458 (707)
.|++++|.+.|++... .+...|..+...|.+.|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998753 3677899999999999999999999999998 5665 45888899999999999999999
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc---CChhHHHHHHHHHHcc
Q 043060 459 FNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVH---GRLELGESVAKHLLEL 533 (707)
Q Consensus 459 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~---g~~~~A~~~~~~~~~~ 533 (707)
+++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...|+ ...+..+...+... |+.++|.+.++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999874 3346788999999999999999999999986 44554 78899999999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 043060 534 EPENPGAYVLLS 545 (707)
Q Consensus 534 ~p~~~~~~~~l~ 545 (707)
+|.+...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988888776
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.88 E-value=9e-08 Score=89.71 Aligned_cols=172 Identities=10% Similarity=-0.064 Sum_probs=132.6
Q ss_pred HHHHHhcCC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC----CHHHHHHHHHHhH
Q 043060 389 AEQVFDGMG-YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG----LLDIGRQYFNAMI 463 (707)
Q Consensus 389 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 463 (707)
|.+.|++.. ..++.++..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|..+|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344444332 3466677777777777888888888888887754 45566666666776 6 7888888888886
Q ss_pred HhcCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCChhHHHHHHHHHH
Q 043060 464 QDYKISPKLQHYGCMVDLLGR----AGLFDEAEALLKTM-EMKPD---AAIWTSLLGACRV----HGRLELGESVAKHLL 531 (707)
Q Consensus 464 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~----~g~~~~A~~~~~~~~ 531 (707)
+. .+...+..|..+|.. .+++++|++.|++. ...|+ +..+..|...|.. .+++++|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 53 356677778888876 78999999999886 44443 7888888888888 789999999999999
Q ss_pred ccCCCCchhHHHHHHHhhhc-C-----ChhhHHHHHHHHhhCCC
Q 043060 532 ELEPENPGAYVLLSNMYAGA-G-----RWDDVATIRTRLNDKGM 569 (707)
Q Consensus 532 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 569 (707)
+. |.++.++..|+.+|... | ++++|...+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 66778999999999764 3 89999999999988775
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.88 E-value=3.4e-08 Score=110.18 Aligned_cols=189 Identities=12% Similarity=0.036 Sum_probs=146.4
Q ss_pred hccCCchHHHHHHHHHH--------HhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHH
Q 043060 345 AYLGALDLGKWIHAYID--------KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAM 413 (707)
Q Consensus 345 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 413 (707)
...|++++|.+.++.+. +..+. +...+..+...|.+.|++++|.+.|+++. ..+...|..+...|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE--SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT--CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc--chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 56777788888887777 44333 67788889999999999999999998774 4577899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHH
Q 043060 414 HGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492 (707)
Q Consensus 414 ~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 492 (707)
.|++++|+..|++..+ ..|+. ..+..+..++...|++++ .+.|+++.+. .+.+...|..+..+|.+.|++++|+
T Consensus 480 ~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998 66755 478888899999999999 9999998863 3346778999999999999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHhcCC-----hhHHHHHHHHHHccCCCCchh
Q 043060 493 ALLKTM-EMKPD-AAIWTSLLGACRVHGR-----LELGESVAKHLLELEPENPGA 540 (707)
Q Consensus 493 ~~~~~~-~~~p~-~~~~~~ll~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~~ 540 (707)
+.|++. ...|+ ...|..+..++...++ .+...++.+.+.++.+.++..
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 999997 67787 6788888888766555 233344444444454444443
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.86 E-value=7.7e-08 Score=105.33 Aligned_cols=145 Identities=11% Similarity=0.009 Sum_probs=81.7
Q ss_pred CCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHH
Q 043060 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLF 424 (707)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 424 (707)
|++++|...++.+.+..+. +...+..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|++.|
T Consensus 3 g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ--DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5566666666666665544 56666667777777777777777776543 234556666677777777777777777
Q ss_pred HHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc---CCHHHHHHHHHhC
Q 043060 425 SRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA---GLFDEAEALLKTM 498 (707)
Q Consensus 425 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 498 (707)
++..+ ..|+ ...+..+..++...|++++|.+.|++..+. .+.+...+..+..+|... |+.++|.+.+++.
T Consensus 81 ~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 77666 3444 336666666677777777777777766652 223455666666667666 7777777766664
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.86 E-value=2e-08 Score=85.28 Aligned_cols=108 Identities=11% Similarity=0.023 Sum_probs=65.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACR 515 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~ 515 (707)
.+......+.+.|++++|.+.|++.++. .+.+...|..+..+|.+.|++++|++.+++. .+.|+ ...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4444555555666666666666555542 2234555556666666666666666666654 33444 566666777777
Q ss_pred hcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 043060 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNM 547 (707)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 547 (707)
..|++++|++.++++++++|+++.++..|.++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 77777777777777777777776666665544
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.85 E-value=5.1e-08 Score=91.10 Aligned_cols=126 Identities=10% Similarity=0.031 Sum_probs=96.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc
Q 043060 407 MISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485 (707)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 485 (707)
+...|.+.|++++|+..|++.++ ..|+. ..+..+..++...|++++|...|+++.+. -+.+...|..+...|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 88888999999999999999988 56654 47888888999999999999999998863 334677888888888766
Q ss_pred CC--HHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 043060 486 GL--FDEAEALLKTMEMKPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537 (707)
Q Consensus 486 g~--~~~A~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 537 (707)
|+ .+++...++... .|+ ...|..+..++...|++++|+..+++++++.|++
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 54 344556665552 344 3345556667778899999999999999999963
No 107
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.84 E-value=1.5e-08 Score=88.82 Aligned_cols=103 Identities=7% Similarity=-0.034 Sum_probs=91.2
Q ss_pred CCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHH
Q 043060 467 KISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVL 543 (707)
Q Consensus 467 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 543 (707)
.+.| +...+..+...+.+.|++++|++.|++. ...|+ ...|..+..++...|++++|+..|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3445 4456777888899999999999999986 55665 8899999999999999999999999999999999999999
Q ss_pred HHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 544 LSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 544 l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
++.+|.+.|++++|.+.|++..+...
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999987543
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.84 E-value=2.9e-08 Score=92.83 Aligned_cols=161 Identities=13% Similarity=0.055 Sum_probs=121.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHH----------------HHHHHhccCCHHHHHHHHHHhHHhc
Q 043060 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVG----------------VLSACNHAGLLDIGRQYFNAMIQDY 466 (707)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~----------------ll~a~~~~g~~~~a~~~~~~~~~~~ 466 (707)
+-.....+...|++++|+..|++..+ ..|+.. .+.. +..++...|++++|...|+...+.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 83 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK- 83 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 33344556677888888888888877 556544 4555 788899999999999999999873
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC--hhHHHHHHHHHHccCCCCchhHH
Q 043060 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGR--LELGESVAKHLLELEPENPGAYV 542 (707)
Q Consensus 467 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~ 542 (707)
.+.+...+..+..+|...|++++|++.|++. ...|+ ..+|..+...+...|+ .+.+...++++....| ....+.
T Consensus 84 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~ 161 (208)
T 3urz_A 84 -APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARY 161 (208)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHH
Confidence 3347788999999999999999999999996 56676 8889999988876654 4455566666554333 223566
Q ss_pred HHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 543 LLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 543 ~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.++.++...|++++|+..+++..+..+
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 778888999999999999999987544
No 109
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.83 E-value=9.1e-09 Score=90.24 Aligned_cols=99 Identities=9% Similarity=0.088 Sum_probs=87.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 548 (707)
+...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4556777888899999999999999886 4455 4889999999999999999999999999999999999999999999
Q ss_pred hhcCChhhHHHHHHHHhhCCC
Q 043060 549 AGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~~~ 569 (707)
...|++++|.+.+++..+...
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHHCc
Confidence 999999999999999877543
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.83 E-value=4.8e-07 Score=88.96 Aligned_cols=209 Identities=14% Similarity=0.172 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcC--CHHHHHHHHhcCC---CCChHHHHHHHHHH----HHc---CCHHH
Q 043060 352 LGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG--NIKAAEQVFDGMG---YKTLASWNAMISGL----AMH---GKADK 419 (707)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~----~~~---g~~~~ 419 (707)
+|..+...++..++. +..+|+.-...+...| +++++++.++.+. .++..+|+.-...+ ... +++++
T Consensus 51 ~aL~~t~~~L~~nP~--~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 51 RALHITELGINELAS--HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHCTT--CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHCcH--HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 444444444444444 4444555555555555 5666666555542 23444555443333 333 56666
Q ss_pred HHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCCHH--HHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC------HHH
Q 043060 420 ALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGLLD--IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL------FDE 490 (707)
Q Consensus 420 A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~ 490 (707)
++.+++++.+ ..|.. .++..-.....+.|.++ +++++++.+.+. -+-+...|+.-..++.+.|+ +++
T Consensus 129 EL~~~~~~l~--~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 129 EFDILEAMLS--SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 6666666666 34433 35554444555555555 666666666652 22345555555555555554 667
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-hHHHHHHHHHHccC---CCCchhHHHHHHHhhhcCChhhHHHHHHHH
Q 043060 491 AEALLKTM-EMKP-DAAIWTSLLGACRVHGRL-ELGESVAKHLLELE---PENPGAYVLLSNMYAGAGRWDDVATIRTRL 564 (707)
Q Consensus 491 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 564 (707)
+++.++++ ...| |...|+-+...+.+.|+. +.....++++++++ |.++.++..++++|.+.|+.++|.++++.+
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 77766664 3444 377777777777776663 33455666666665 667777777777777777778888777777
Q ss_pred hh
Q 043060 565 ND 566 (707)
Q Consensus 565 ~~ 566 (707)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 111
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.76 E-value=3.8e-06 Score=89.33 Aligned_cols=366 Identities=10% Similarity=-0.019 Sum_probs=172.6
Q ss_pred cCC-CchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC-hhHH
Q 043060 107 LSS-SPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE-LESA 184 (707)
Q Consensus 107 ~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A 184 (707)
+.| +...|..+|+.+... -|. ++++.+.++|+..+.. .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377788888877753 233 8889999999988874 4688888888887776653 3444
Q ss_pred HHHHhcCC------CCCeehHHHHHHHHH----hCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHh---ccCCchH
Q 043060 185 RLVFNKSS------LRDAVSYTALITGYA----SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA---HMGSLEL 251 (707)
Q Consensus 185 ~~~f~~~~------~~~~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~---~~g~~~~ 251 (707)
..+|+... ..+...|...+..+. .+++.+.+.++|++.+. +++.. +..+-..|. ...+...
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~----~P~~~--~~~lw~~Y~~fE~~~~~~~ 141 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ----TPMGS--LSELWKDFENFELELNKIT 141 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT----SCCTT--HHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh----Chhhh--HHHHHHHHHHHHHHhcccc
Confidence 55555322 225566776666543 23556677777777742 22111 111111111 1111111
Q ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhhHHHHHHHHHhcC--C-----HHHHHH
Q 043060 252 GNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE----KRDVISWNVMIGGYTHTS--D-----YKEALM 320 (707)
Q Consensus 252 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g--~-----~~~A~~ 320 (707)
+..+..... +.+..|+.+++.+. ..+...|...+.--...+ - .+.+..
T Consensus 142 ~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~ 200 (493)
T 2uy1_A 142 GKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHF 200 (493)
T ss_dssp HHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHH
Confidence 222111110 12222333322221 113334554444322221 0 234556
Q ss_pred HHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHH-HHHHhcCC--
Q 043060 321 LFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA-EQVFDGMG-- 397 (707)
Q Consensus 321 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A-~~~~~~~~-- 397 (707)
+|++++... +.+...|...+.-+...|+.+.|..+++..++. +. +...+.. |+...+.++. ..+.+...
T Consensus 201 ~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~--~~~l~~~----y~~~~e~~~~~~~l~~~~~~~ 272 (493)
T 2uy1_A 201 IHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SD--GMFLSLY----YGLVMDEEAVYGDLKRKYSMG 272 (493)
T ss_dssp HHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC--SSHHHHH----HHHHTTCTHHHHHHHHHTC--
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC--cHHHHHH----HHhhcchhHHHHHHHHHHHhh
Confidence 777766542 233455555555666677777777777777777 33 3333322 2221111111 11111100
Q ss_pred ----------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh-ccCCHHHHHHHHHHhHHhc
Q 043060 398 ----------YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN-HAGLLDIGRQYFNAMIQDY 466 (707)
Q Consensus 398 ----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~~~~~~ 466 (707)
......|-..+..+.+.++.+.|..+|++. .. ...+...|......-. ..++.+.|..+|+...+.+
T Consensus 273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 273 EAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred ccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 001134555555555555666666666666 21 1112222221111111 1224666666666665543
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043060 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLL 531 (707)
Q Consensus 467 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 531 (707)
+- +...+...++...+.|+.+.|..+|+++. .....|...+..-..+|+.+.+..++++..
T Consensus 351 ~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 351 PD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp TT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 21 22334445555555666666666666652 134555555555555555555555555444
No 112
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.75 E-value=9.5e-07 Score=87.43 Aligned_cols=161 Identities=7% Similarity=-0.034 Sum_probs=122.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHh----HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHH
Q 043060 406 AMISGLAMHGKADKALSLFSRMIGEGL-QPDDI----TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK----LQHYG 476 (707)
Q Consensus 406 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 476 (707)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...|+.+.+...-.++ ...++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678889999999999999887321 22211 2334666677788999999999998863222233 23688
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCC-------CC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC------chhH
Q 043060 477 CMVDLLGRAGLFDEAEALLKTME-------MK-PD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN------PGAY 541 (707)
Q Consensus 477 ~li~~~~~~g~~~~A~~~~~~~~-------~~-p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 541 (707)
.+...|...|++++|++.++++- .. +. ..++..++..|...|++++|...+++++++.+.. +.+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999888751 11 22 4588899999999999999999999999865332 5789
Q ss_pred HHHHHHhhhcCC-hhhHHHHHHHHhh
Q 043060 542 VLLSNMYAGAGR-WDDVATIRTRLND 566 (707)
Q Consensus 542 ~~l~~~~~~~g~-~~~a~~~~~~m~~ 566 (707)
..++.+|.+.|+ +++|.+.+++..+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999988764
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.75 E-value=5.2e-08 Score=82.63 Aligned_cols=101 Identities=10% Similarity=0.105 Sum_probs=90.8
Q ss_pred CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHH
Q 043060 468 ISPK-LQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL 544 (707)
Q Consensus 468 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 544 (707)
+.|+ ...+......|.+.|++++|++.|++. ...|+ ..+|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3443 356778899999999999999999986 55665 88999999999999999999999999999999999999999
Q ss_pred HHHhhhcCChhhHHHHHHHHhhCC
Q 043060 545 SNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 545 ~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
+.+|...|++++|.+.+++..+..
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999998754
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.75 E-value=1.7e-07 Score=93.63 Aligned_cols=180 Identities=12% Similarity=0.069 Sum_probs=119.7
Q ss_pred hhHHHhcCCHHHHHHHHhcCCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HhHHHHH
Q 043060 377 IDMYAKCGNIKAAEQVFDGMGY-----KT----LASWNAMISGLAMHGKADKALSLFSRMIGEGL---QPD--DITFVGV 442 (707)
Q Consensus 377 i~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~l 442 (707)
...|...|++++|...|.+... .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555666666655554321 11 23677777788888888888888887765210 121 2366777
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HHHHHHH
Q 043060 443 LSACNHAGLLDIGRQYFNAMIQDYKISPK----LQHYGCMVDLLGRAGLFDEAEALLKTM-EM---KPD----AAIWTSL 510 (707)
Q Consensus 443 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l 510 (707)
...|.. |++++|...|++..+.+.-..+ ...+..+...|.+.|++++|++.|++. .+ .++ ...+..+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 778877 9999999988887653211111 356778889999999999999999875 11 112 2366777
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCchh-----HHHHHHHhhhcCChhhHHH
Q 043060 511 LGACRVHGRLELGESVAKHLLELEPENPGA-----YVLLSNMYAGAGRWDDVAT 559 (707)
Q Consensus 511 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 559 (707)
+..+...|++++|...+++++ +.|..... ...++..+ ..|+.+...+
T Consensus 202 g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 778888899999999999999 88865432 34455555 5677665554
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=1.4e-07 Score=88.27 Aligned_cols=125 Identities=12% Similarity=-0.022 Sum_probs=97.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 043060 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVH 517 (707)
Q Consensus 440 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~ 517 (707)
..+...+...|++++|...|+... .|+...|..+...|.+.|++++|++.+++. ...|+ ...|..+...+...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 344555666677777777776542 356667777777777778888877777765 33444 77888888889999
Q ss_pred CChhHHHHHHHHHHccCCCCc----------------hhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 518 GRLELGESVAKHLLELEPENP----------------GAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 518 g~~~~A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
|++++|...++++++..|.+. .++..++.+|.+.|++++|.+.+++..+...
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 999999999999999888776 8899999999999999999999999887654
No 116
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.73 E-value=9.9e-08 Score=82.93 Aligned_cols=98 Identities=12% Similarity=0.034 Sum_probs=85.6
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 548 (707)
+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+..++...|++++|...++++++++|+++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3455666778888999999999999886 44554 888999999999999999999999999999999999999999999
Q ss_pred hhcCChhhHHHHHHHHhhCC
Q 043060 549 AGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~~ 568 (707)
...|++++|.+.+++..+..
T Consensus 97 ~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999987653
No 117
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.73 E-value=2.8e-07 Score=87.23 Aligned_cols=185 Identities=13% Similarity=-0.011 Sum_probs=130.5
Q ss_pred hhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCC-cHHHHhHHhhHHHhcCCHHHHHHHHhcCCC--C-Ch---HHHHH
Q 043060 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN-NVSLWTSLIDMYAKCGNIKAAEQVFDGMGY--K-TL---ASWNA 406 (707)
Q Consensus 334 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~---~~~~~ 406 (707)
...+......+...|+++.|...++.+++..+..+ ....+..+..+|.+.|++++|...|++... | +. .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455566778899999999999999999876542 246788899999999999999999998732 2 22 24555
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHHHCCCCCCHhH-HHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 043060 407 MISGLAM------------------HGKADKALSLFSRMIGEGLQPDDIT-FVGVLSACNHAGLLDIGRQYFNAMIQDYK 467 (707)
Q Consensus 407 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 467 (707)
+..++.. .|++++|+..|+++++ ..|+... ...... . ..+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~----l------~~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKR----L------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHH----H------HHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHH----H------HHHHHHH-----
Confidence 5555554 4677788888888777 4565542 111100 0 0000111
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 043060 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG 539 (707)
Q Consensus 468 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 539 (707)
......+...|.+.|++++|+..|+++ ...|+ ...+..+..++.+.|+.++|.+.++.+....|++..
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 011234677899999999999999986 34454 357888999999999999999999999988887643
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.72 E-value=4.1e-08 Score=98.09 Aligned_cols=171 Identities=6% Similarity=-0.065 Sum_probs=134.6
Q ss_pred cCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHhccCCHHHHHH
Q 043060 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE----GLQPD-DITFVGVLSACNHAGLLDIGRQ 457 (707)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 457 (707)
.+++++|...|.+ ....|...|++++|+..|.+..+. |-.+. ..+|..+...|...|++++|..
T Consensus 29 ~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 29 KPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp SCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred CCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4788888888765 366788999999999999988763 11111 2378888889999999999999
Q ss_pred HHHHhHHhcCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC---CC----HHHHHHHHHHHHhcCChhHHHH
Q 043060 458 YFNAMIQDYKISPK----LQHYGCMVDLLGRAGLFDEAEALLKTM-EMK---PD----AAIWTSLLGACRVHGRLELGES 525 (707)
Q Consensus 458 ~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~---p~----~~~~~~ll~~~~~~g~~~~A~~ 525 (707)
.|+...+-+.-..+ ..++..+..+|.+ |++++|++.+++. .+. .+ ..++..+...+...|++++|+.
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99987654321111 3577888899988 9999999999885 111 11 4678899999999999999999
Q ss_pred HHHHHHccCCCCc------hhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 526 VAKHLLELEPENP------GAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 526 ~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
.+++++++.|.+. ..+..++.++...|++++|...+++..
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999865443 367778888999999999999999987
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.71 E-value=4.1e-07 Score=90.12 Aligned_cols=165 Identities=7% Similarity=-0.025 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CCC--h
Q 043060 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-----ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI--SPK--L 472 (707)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~ 472 (707)
..+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...++...+...- .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555677788899999999999888874222111 12334555667888999999999887653111 111 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC------C
Q 043060 473 QHYGCMVDLLGRAGLFDEAEALLKTM----EMKPD-----AAIWTSLLGACRVHGRLELGESVAKHLLELEPE------N 537 (707)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------~ 537 (707)
..|+.+...|...|++++|.+.+++. ...|+ ..++..++..|...|++++|...+++++++.++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 57888999999999999999998875 11222 258889999999999999999999999886432 1
Q ss_pred chhHHHHHHHhhhcCChhhH-HHHHHHHhh
Q 043060 538 PGAYVLLSNMYAGAGRWDDV-ATIRTRLND 566 (707)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 566 (707)
..+|..++.+|.+.|++++| ...+++..+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56889999999999999999 777877653
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.71 E-value=2.1e-07 Score=84.22 Aligned_cols=157 Identities=10% Similarity=-0.022 Sum_probs=115.3
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH-Hh
Q 043060 372 LWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA-CN 447 (707)
Q Consensus 372 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~ 447 (707)
....+...+.+.|++++|...|++... .+...|..+...+...|++++|+..|++... ..|+......+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChHHHHHHHHHHHH
Confidence 345667778888999999999988753 3667888888889999999999999988876 44543322221111 12
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChhHH
Q 043060 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD---AAIWTSLLGACRVHGRLELG 523 (707)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~A 523 (707)
..+...+|...++...+. .+.+...+..+...|...|++++|.+.|+++ ...|+ ...|..+...+...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 222233467778877652 2335788888999999999999999999886 55554 56888999999999999999
Q ss_pred HHHHHHHHc
Q 043060 524 ESVAKHLLE 532 (707)
Q Consensus 524 ~~~~~~~~~ 532 (707)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 121
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.71 E-value=4.4e-06 Score=82.07 Aligned_cols=225 Identities=12% Similarity=0.057 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHhhcCCCCChhh-HHhHHHHHhccC--CchHHHHHHHHHHHhCCCCCcHHHHhHHhhHH----Hhc---C
Q 043060 315 YKEALMLFRQMLQSNIEPNDVT-FLSVLPACAYLG--ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMY----AKC---G 384 (707)
Q Consensus 315 ~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y----~~~---g 384 (707)
.++|++++.+++.. .|+..| ++.--..+...+ .++++...+..++...+. +..+|+.-...+ .+. +
T Consensus 49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk--~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 49 SERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK--NYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT--CCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc--cHHHHHHHHHHHHHHHHhccccC
Confidence 34566666666553 333332 333334444445 566666666666666555 444454443333 344 6
Q ss_pred CHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCC------H
Q 043060 385 NIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKAD--KALSLFSRMIGEGLQPD-DITFVGVLSACNHAGL------L 452 (707)
Q Consensus 385 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~------~ 452 (707)
++++++++++++. .++..+|+--.-.+.+.|.++ ++++.++++++ ..|. ...++.-.....+.+. +
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhhH
Confidence 7888888888773 557778888888888888888 99999999998 4454 3466665556666665 8
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCChhHHHHH
Q 043060 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE-AEALLKTM-EM----KPDAAIWTSLLGACRVHGRLELGESV 526 (707)
Q Consensus 453 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~ll~~~~~~g~~~~A~~~ 526 (707)
+++++.++.++. ..+-|...|+.+..++.+.|+..+ +.++.+++ .. ..+...+..++..+.+.|+.++|.++
T Consensus 203 ~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 999999998886 344578889999999999998555 55577765 22 23578899999999999999999999
Q ss_pred HHHHHc-cCCCCchhHHHHHHH
Q 043060 527 AKHLLE-LEPENPGAYVLLSNM 547 (707)
Q Consensus 527 ~~~~~~-~~p~~~~~~~~l~~~ 547 (707)
++.+.+ .+|.....|...+..
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHhccChHHHHHHHHHHhh
Confidence 999996 799887777765544
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.67 E-value=8e-07 Score=83.10 Aligned_cols=144 Identities=9% Similarity=0.008 Sum_probs=89.7
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCC
Q 043060 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGL 451 (707)
Q Consensus 373 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 451 (707)
+..+...|...|++++|.+.|++...++...|..+...|...|++++|+..|++..+ ..|+ ...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHccc
Confidence 445566666777777777777776666666677777777777777777777777666 2333 3355555556666666
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043060 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD-AAIWTSLLGACRVHGRLELGESVAKHL 530 (707)
Q Consensus 452 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~ 530 (707)
+++|...|+.+.+...-.+... +...| +...|+ ...|..+...+...|++++|...++++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666665554211000000 00000 012333 467888888899999999999999999
Q ss_pred HccCCCC
Q 043060 531 LELEPEN 537 (707)
Q Consensus 531 ~~~~p~~ 537 (707)
+++.|++
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 9998876
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.66 E-value=2.6e-07 Score=82.43 Aligned_cols=126 Identities=8% Similarity=0.021 Sum_probs=89.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 043060 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRV 516 (707)
Q Consensus 439 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 516 (707)
+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 344444555555666666555555442 2234556666777777777777777777764 3344 37788888999999
Q ss_pred cCChhHHHHHHHHHHccCCCCchhHHHHHHH--hhhcCChhhHHHHHHHHhh
Q 043060 517 HGRLELGESVAKHLLELEPENPGAYVLLSNM--YAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~~ 566 (707)
.|++++|...++++++..|.++..+..+..+ +.+.|++++|.+.++...+
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999988887554444 8888999999999887653
No 124
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.65 E-value=6.7e-07 Score=88.17 Aligned_cols=116 Identities=8% Similarity=-0.019 Sum_probs=50.1
Q ss_pred hccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC--CChHHH-HHHHHHHHHcCCHHHHH
Q 043060 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY--KTLASW-NAMISGLAMHGKADKAL 421 (707)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~-~~li~~~~~~g~~~~A~ 421 (707)
...|+++.|...++.+.+..+. +...+..+...|.+.|++++|...|+++.. ++.... ......+.+.++.++|+
T Consensus 128 ~~~g~~~~A~~~~~~al~~~P~--~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~ 205 (287)
T 3qou_A 128 MQESNYTDALPLLXDAWQLSNQ--NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEI 205 (287)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTS--CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCc--chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccH
Confidence 3334444444444444333333 444455555555555555555555555432 222111 11112233444444455
Q ss_pred HHHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 043060 422 SLFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 422 ~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
..|++..+ ..|+. ..+..+..++...|++++|...|..+.+
T Consensus 206 ~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~ 247 (287)
T 3qou_A 206 QQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLR 247 (287)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55555544 23332 2344444444444444444444444443
No 125
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.64 E-value=7.1e-08 Score=94.86 Aligned_cols=191 Identities=7% Similarity=-0.036 Sum_probs=126.8
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLS 444 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 444 (707)
+...+..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..+++..+ ..|+. ..+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45566777777888888888888887652 34667788888888888888888888888877 45554 46777777
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 043060 445 ACNHAGLLDIGRQYFNAMIQDYKISPKL-QHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELG 523 (707)
Q Consensus 445 a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A 523 (707)
++...|++++|...|+...+.. |+. ..+...+....+.++...... .......++......+.. + ..|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence 8888888888888888766531 110 011111111111111111111 222233344444444433 2 36899999
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHhhhc-CChhhHHHHHHHHhhC
Q 043060 524 ESVAKHLLELEPENPGAYVLLSNMYAGA-GRWDDVATIRTRLNDK 567 (707)
Q Consensus 524 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 567 (707)
.+.++++++++|++......+...+.+. +++++|.++|.++.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999998887777887777776 7899999999988764
No 126
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.64 E-value=1.7e-07 Score=84.87 Aligned_cols=121 Identities=8% Similarity=0.098 Sum_probs=93.6
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCh--h
Q 043060 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGA-CRVHGRL--E 521 (707)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~~--~ 521 (707)
...|++++|...++...+. .+.+...|..+...|...|++++|.+.|++. ...| +...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 4466777777777776653 2345677778888888888888888888875 3344 47778888888 7788988 9
Q ss_pred HHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 522 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+|...++++++.+|.++.++..++.+|...|++++|...++++.+...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999999887654
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.62 E-value=3.5e-07 Score=77.59 Aligned_cols=116 Identities=10% Similarity=0.010 Sum_probs=84.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACR 515 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~ 515 (707)
.+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|.+.+++. ...|+ ...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 4445555555666666666666665542 2234556666777777777777777777764 33444 778888888999
Q ss_pred hcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChh
Q 043060 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555 (707)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 555 (707)
..|++++|...++++++..|+++..+..++.++...|+++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999998888753
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.62 E-value=4.5e-07 Score=76.13 Aligned_cols=113 Identities=21% Similarity=0.283 Sum_probs=79.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACR 515 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 515 (707)
.+..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|...++++ ...| +..+|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4445555555666666666666655542 2234556666777777777777777777765 2233 4778888888888
Q ss_pred hcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcC
Q 043060 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552 (707)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 552 (707)
..|++++|...++++++..|.++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999988888888888776544
No 129
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.61 E-value=1.7e-06 Score=80.81 Aligned_cols=173 Identities=7% Similarity=-0.139 Sum_probs=131.5
Q ss_pred HHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC-CChHHHHHHHHHHHHcC----CHHHHHHHHHHH
Q 043060 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-KTLASWNAMISGLAMHG----KADKALSLFSRM 427 (707)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m 427 (707)
|.+.+....+.| ++..+..|..+|...+++++|.+.|++... .+..++..+...|.. + ++++|++.|++.
T Consensus 5 A~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 334444444443 667778888888888888899888887643 466778888887777 6 899999999999
Q ss_pred HHCCCCCCHhHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHHH----cCCHHHHHHHHH
Q 043060 428 IGEGLQPDDITFVGVLSACNH----AGLLDIGRQYFNAMIQDYKISPK---LQHYGCMVDLLGR----AGLFDEAEALLK 496 (707)
Q Consensus 428 ~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~ 496 (707)
.+.| +...+..|...|.. .+++++|..+|+...+ ..|. ...+..|..+|.. .+++++|.+.|+
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8754 55567777777776 8899999999998864 2332 6778888889988 889999999999
Q ss_pred hC-CCCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHccCCC
Q 043060 497 TM-EMKPDAAIWTSLLGACRVH-G-----RLELGESVAKHLLELEPE 536 (707)
Q Consensus 497 ~~-~~~p~~~~~~~ll~~~~~~-g-----~~~~A~~~~~~~~~~~p~ 536 (707)
+. ...++...+..|...|... | +.++|...++++.+.+..
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 86 3334566777888877653 3 899999999999988753
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.58 E-value=3.3e-07 Score=78.08 Aligned_cols=112 Identities=12% Similarity=0.027 Sum_probs=66.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 043060 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVH 517 (707)
Q Consensus 440 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 517 (707)
..+...+...|++++|...|+...+ ..+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+...
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 97 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAM 97 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 3333334444444444444444332 11123344444555555555555555555543 2233 366777777888888
Q ss_pred CChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCC
Q 043060 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGR 553 (707)
Q Consensus 518 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 553 (707)
|++++|...++++++.+|.+...+..++.++...|+
T Consensus 98 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 98 KDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp TCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888888888888888888888888887776653
No 131
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.57 E-value=3.3e-07 Score=87.94 Aligned_cols=183 Identities=10% Similarity=-0.018 Sum_probs=131.2
Q ss_pred hcCCHHHHHHHHhcCC---CCChHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHh--------------
Q 043060 382 KCGNIKAAEQVFDGMG---YKTLASWNAM-------ISGLAMHGKADKALSLFSRMIGEGLQPDDI-------------- 437 (707)
Q Consensus 382 ~~g~~~~A~~~~~~~~---~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------------- 437 (707)
..++...|.+.|.++. ......|+.+ ...+...++..+++..+++-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 4677778888887663 3345577777 4555555566666666655554 444322
Q ss_pred --------HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH----H
Q 043060 438 --------TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA----A 505 (707)
Q Consensus 438 --------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~ 505 (707)
....+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 123355677888999999999988754 2354335566677888999999999999876444432 3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccC--CC-CchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 506 IWTSLLGACRVHGRLELGESVAKHLLELE--PE-NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 506 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|..+|+++.....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 67788889999999999999999988533 44 445788899999999999999999999887543
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.57 E-value=2.8e-07 Score=93.13 Aligned_cols=144 Identities=13% Similarity=0.037 Sum_probs=109.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 043060 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479 (707)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 479 (707)
+...|..+...|.+.|++++|+..|++.++ +.|+...+ ..+++.+.-. .....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~~~~---------~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF-----------SNEEAQKAQA---------LRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC-----------CSHHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccC-----------ChHHHHHHHH---------HHHHHHHHHH
Confidence 445777788888888888888888888877 44443210 0011111000 1235677788
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhH
Q 043060 480 DLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557 (707)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 557 (707)
.+|.+.|++++|++.+++. ...|+ ...|..+..++...|++++|+..++++++++|+++.++..++.++.+.|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999988886 45554 889999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHh
Q 043060 558 -ATIRTRLN 565 (707)
Q Consensus 558 -~~~~~~m~ 565 (707)
...++.|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 45666664
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.57 E-value=2.8e-07 Score=78.02 Aligned_cols=97 Identities=10% Similarity=0.016 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhh
Q 043060 472 LQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549 (707)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 549 (707)
...+..+...+.+.|++++|++.|++. ...|+ ...|..+..++...|++++|+..++++++++|+++.+|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666778888899999999988875 44554 7889999999999999999999999999999999999999999999
Q ss_pred hcCChhhHHHHHHHHhhCC
Q 043060 550 GAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 550 ~~g~~~~a~~~~~~m~~~~ 568 (707)
..|++++|.+.+++..+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 9999999999999887644
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.57 E-value=1.2e-07 Score=83.02 Aligned_cols=115 Identities=13% Similarity=0.012 Sum_probs=85.4
Q ss_pred HHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 043060 424 FSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMK 501 (707)
Q Consensus 424 ~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 501 (707)
|+++.. +.|+.. .+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|++.|++. ...
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 444443 445443 5556666777778888888887777652 2346677777888888888888888888875 445
Q ss_pred CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHH
Q 043060 502 PD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV 542 (707)
Q Consensus 502 p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 542 (707)
|+ ...|..+..++...|++++|+..+++++++.|+++....
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 54 778888999999999999999999999999998776533
No 135
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.56 E-value=3.2e-05 Score=82.19 Aligned_cols=339 Identities=12% Similarity=-0.009 Sum_probs=180.8
Q ss_pred CChHHHHHHHhcCCC--CCcchHHHHHHHHHcCCC-chHHHHHHHHHHHC-CCCC-CcccHHHHHHHHh----ccCChHH
Q 043060 78 GDLSYALLVFETIRE--PNQVIWNNIIRGHSLSSS-PVVAIKFYVRMILS-GFVP-NTYTFPFILKSCA----KISAISE 148 (707)
Q Consensus 78 g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~p-~~~t~~~ll~~~~----~~~~~~~ 148 (707)
|..+.+..+|++... |++..|..-+.-..+.+. .+....+|+..+.. |..| +...|...+..+. ..++++.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 556666666665443 566666655554444432 23445555555542 3222 3334444444332 1244556
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHh-------------CCChhHHHHHHhcCC----CCCeehHHHHHHHHHhCCC
Q 043060 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQ-------------NGELESARLVFNKSS----LRDAVSYTALITGYASRGY 211 (707)
Q Consensus 149 a~~~~~~~~~~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~ 211 (707)
++.+++..+......-...|......-.. .+.+..|+.+++.+. ..+...|...+.--...+.
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 66666666653211111122211111000 011222333322211 1133356555544322211
Q ss_pred -------hhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCH
Q 043060 212 -------LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284 (707)
Q Consensus 212 -------~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 284 (707)
.+.+..+|++++. ..+-+...|...+.-+.+.|+.+.|..+++..++. +.+...+...... .+.++.
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~---~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~~~ 261 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILD---SFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEEAV 261 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHH---HTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCTHH
T ss_pred cCcchhhHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchhHH
Confidence 2345667777652 22334556666666677788888888888888887 4444444322221 011111
Q ss_pred HHHHHHHHhcC--C-------C---ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHH-hccCCch
Q 043060 285 VKARDLFESIE--K-------R---DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC-AYLGALD 351 (707)
Q Consensus 285 ~~A~~~~~~~~--~-------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~~~ 351 (707)
...+.+... + + ....|-..+..+.+.+..+.|..+|.+. .. ...+...|......- ...++.+
T Consensus 262 --~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~ 337 (493)
T 2uy1_A 262 --YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRA 337 (493)
T ss_dssp --HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSH
T ss_pred --HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChH
Confidence 111222110 0 0 1245666677777778899999999888 32 112333333211111 1233688
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043060 352 LGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG 429 (707)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (707)
.|+.+++...+..+. ++..+...++...+.|+.+.|..+|+++. +....|...+.--...|+.+.+..+++++..
T Consensus 338 ~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 338 TPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999998887654 45566777888888899999999999884 4567788888777778888888888887764
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.56 E-value=3.6e-07 Score=79.89 Aligned_cols=105 Identities=6% Similarity=-0.031 Sum_probs=88.2
Q ss_pred CCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHH
Q 043060 432 LQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWT 508 (707)
Q Consensus 432 ~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~ 508 (707)
+.|+.. .+..+...+.+.|++++|...|+.+.+. -+.+...|..+..+|.+.|++++|++.|++. .+.|+ +..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 455554 6777788888999999999999988863 3346788889999999999999999999986 55665 78899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 043060 509 SLLGACRVHGRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 509 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 538 (707)
.+..++...|++++|+..|++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999998654
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.56 E-value=6.4e-07 Score=85.92 Aligned_cols=139 Identities=15% Similarity=-0.026 Sum_probs=103.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHH
Q 043060 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK--LQHYGCMVDL 481 (707)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~ 481 (707)
+-.....+...|++++|.++|+.+.. ..|+......+...+.+.+++++|+..|+...+. ..|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHH
Confidence 34456677788888888888888776 3466555555566788889999999988865431 1121 2356778889
Q ss_pred HHHcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 043060 482 LGRAGLFDEAEALLKTME---MKPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547 (707)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 547 (707)
+.+.|++++|++.|++.. ..|. ...+..+..++.+.|+.++|...|++++..+|+ +.++..|.+.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 999999999999999872 2254 447778888999999999999999999999998 7666666443
No 138
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.54 E-value=2.2e-07 Score=78.00 Aligned_cols=96 Identities=11% Similarity=-0.002 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhc
Q 043060 474 HYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA 551 (707)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 551 (707)
.+..+...+.+.|++++|+..|++. ...|+ ...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3455677888999999999999886 55564 889999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHhhCCC
Q 043060 552 GRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 552 g~~~~a~~~~~~m~~~~~ 569 (707)
|++++|...+++..+...
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999887543
No 139
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.52 E-value=5.4e-07 Score=95.65 Aligned_cols=118 Identities=8% Similarity=0.045 Sum_probs=92.8
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChh
Q 043060 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLE 521 (707)
Q Consensus 444 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~ 521 (707)
..+.+.|++++|.+.|+++.+. .+.+...|..+..+|.+.|++++|++.+++. ...|+ ..+|..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3455677777777777777653 2335677888888888888888888888875 55565 788999999999999999
Q ss_pred HHHHHHHHHHccCCCCchhHHHHHHH--hhhcCChhhHHHHHHH
Q 043060 522 LGESVAKHLLELEPENPGAYVLLSNM--YAGAGRWDDVATIRTR 563 (707)
Q Consensus 522 ~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 563 (707)
+|++.++++++++|+++.++..++.+ +.+.|++++|++.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999888 8899999999999874
No 140
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.52 E-value=7.1e-08 Score=89.33 Aligned_cols=174 Identities=9% Similarity=-0.025 Sum_probs=108.4
Q ss_pred hHHhhHHHhcCCHHHHHHHHhcCCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC
Q 043060 374 TSLIDMYAKCGNIKAAEQVFDGMGYK---TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450 (707)
Q Consensus 374 ~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 450 (707)
+..+......|++++|.+.++..... ....|..+...+...|++++|+..|++..+ ..|+...+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~-------- 77 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ-------- 77 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------
Confidence 44455556667777777777644322 344677778888888999999999988887 33432211000
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHH
Q 043060 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAK 528 (707)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~ 528 (707)
..+.-. .. .....|..+..+|.+.|++++|+..+++. ...|+ ...|..+..++...|++++|...++
T Consensus 78 ~~~~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 78 ILLDKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHHHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 000000 00 01356667788888899999999888875 44554 7889999999999999999999999
Q ss_pred HHHccCCCCchhHHHHHHHhhhcCChhhHH-HHHHHHhhCC
Q 043060 529 HLLELEPENPGAYVLLSNMYAGAGRWDDVA-TIRTRLNDKG 568 (707)
Q Consensus 529 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~~ 568 (707)
++++++|+++.++..++.++...|+.+++. ..++.|...+
T Consensus 147 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 147 KAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999988888877 5555554443
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.50 E-value=1.3e-06 Score=77.92 Aligned_cols=98 Identities=10% Similarity=0.065 Sum_probs=77.6
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 548 (707)
+...+..+...|.+.|++++|++.|++. ...| +...|..+...+...|++++|+..++++++++|+++.+|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3456666777778888888888888775 4445 4778888888888888888888888888888888888888888888
Q ss_pred hhcCChhhHHHHHHHHhhCC
Q 043060 549 AGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~~ 568 (707)
...|++++|.+.+++..+..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC
Confidence 88888888888888887644
No 142
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.49 E-value=5.4e-07 Score=73.98 Aligned_cols=99 Identities=14% Similarity=0.131 Sum_probs=82.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC--CchhHHHHHH
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPE--NPGAYVLLSN 546 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 546 (707)
+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|. ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3445566777778888888888888775 3334 4778888999999999999999999999999999 8999999999
Q ss_pred Hhhhc-CChhhHHHHHHHHhhCCC
Q 043060 547 MYAGA-GRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 547 ~~~~~-g~~~~a~~~~~~m~~~~~ 569 (707)
+|... |++++|.+.+++..+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999999887654
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.48 E-value=9.8e-07 Score=75.77 Aligned_cols=99 Identities=17% Similarity=0.080 Sum_probs=86.5
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 043060 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547 (707)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 547 (707)
.+...+..+...+...|++++|...|++. ...|+ ...|..+...+...|++++|...++++++++|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45677888888888999999999888875 44454 78899999999999999999999999999999999999999999
Q ss_pred hhhcCChhhHHHHHHHHhhCC
Q 043060 548 YAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~~~ 568 (707)
|...|++++|...+++..+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999987654
No 144
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.48 E-value=2.9e-07 Score=79.90 Aligned_cols=106 Identities=15% Similarity=0.027 Sum_probs=78.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACR 515 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~ 515 (707)
.+..+...+...|++++|...|+.+.+. .+.+...|..+..+|.+.|++++|+..|++. ...|+ ...|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4445555666777777777777776652 2335666777778888888888888888775 44454 677888888999
Q ss_pred hcCChhHHHHHHHHHHccCCCCchhHHHHH
Q 043060 516 VHGRLELGESVAKHLLELEPENPGAYVLLS 545 (707)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 545 (707)
..|++++|...+++++++.|+++.......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 999999999999999999988876655433
No 145
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.46 E-value=1.7e-05 Score=78.30 Aligned_cols=159 Identities=9% Similarity=-0.041 Sum_probs=120.4
Q ss_pred HHhhHHHhcCCHHHHHHHHhcCCCC---ChH------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCH----hHHH
Q 043060 375 SLIDMYAKCGNIKAAEQVFDGMGYK---TLA------SWNAMISGLAMHGKADKALSLFSRMIGEGLQ-PDD----ITFV 440 (707)
Q Consensus 375 ~li~~y~~~g~~~~A~~~~~~~~~~---~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~ 440 (707)
..+..+...|++++|.+.+++.... +.. .+..+...+...|++++|+..|++..+.... ++. .+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788899999999999876332 111 2334666677788999999999999984322 222 2688
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhc----CCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHH
Q 043060 441 GVLSACNHAGLLDIGRQYFNAMIQDY----KISPK-LQHYGCMVDLLGRAGLFDEAEALLKTM-------EMKPD-AAIW 507 (707)
Q Consensus 441 ~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~ 507 (707)
.+...|...|++++|..+|+.+.+.. +..+. ..+|..+...|.+.|++++|.+.+++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999999887532 11121 247788999999999999999998875 22233 6789
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHcc
Q 043060 508 TSLLGACRVHGR-LELGESVAKHLLEL 533 (707)
Q Consensus 508 ~~ll~~~~~~g~-~~~A~~~~~~~~~~ 533 (707)
..+...+...|+ +++|.+.+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 999999999995 69999999998864
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.46 E-value=5.2e-07 Score=76.47 Aligned_cols=94 Identities=10% Similarity=0.038 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc-------hhHHH
Q 043060 473 QHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENP-------GAYVL 543 (707)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~~ 543 (707)
..+..+...+.+.|++++|++.|++. .+.|+ ..+|..+..++...|++++|+..++++++++|++. .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667888899999999999999885 55665 88899999999999999999999999999988654 36788
Q ss_pred HHHHhhhcCChhhHHHHHHHHhh
Q 043060 544 LSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 544 l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
++.+|...|++++|++.|++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 89999999999999999998765
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.44 E-value=2.6e-06 Score=70.50 Aligned_cols=106 Identities=19% Similarity=0.134 Sum_probs=55.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 043060 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVH 517 (707)
Q Consensus 440 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~ 517 (707)
..+...+...|++++|...|+...+. .+.+...+..+...|.+.|++++|.+.+++. ...|+ ...|..+...+...
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 33334444444444444444444331 1123444444555555555555555555543 22332 55566666666666
Q ss_pred CChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 043060 518 GRLELGESVAKHLLELEPENPGAYVLLSNM 547 (707)
Q Consensus 518 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 547 (707)
|++++|...++++++.+|+++..+..++.+
T Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 666666666666666666666555555444
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.43 E-value=8.1e-07 Score=80.33 Aligned_cols=126 Identities=8% Similarity=0.086 Sum_probs=93.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-HHHcCCH-
Q 043060 412 AMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL-LGRAGLF- 488 (707)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~- 488 (707)
...|++++|+..|++..+ ..| +...+..+...+...|++++|...|+.+.+. .+.+...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 345677778888877776 344 3457777777888888888888888887763 22356677777777 7788888
Q ss_pred -HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhH
Q 043060 489 -DEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541 (707)
Q Consensus 489 -~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 541 (707)
++|...+++. ...|+ ...|..+...+...|++++|...++++++..|+++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8999888876 44555 77888899999999999999999999999999876543
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.43 E-value=4e-06 Score=77.48 Aligned_cols=155 Identities=14% Similarity=0.054 Sum_probs=70.9
Q ss_pred hcCCHHHHHH---HHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHhccCCHH
Q 043060 382 KCGNIKAAEQ---VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE----GLQPD-DITFVGVLSACNHAGLLD 453 (707)
Q Consensus 382 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~ 453 (707)
..|++++|.+ .+..-+.....++..+...+...|++++|+..+++..+. +..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3456666666 443333233445666666666666666666666665541 11111 123344444444555555
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043060 454 IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP-D-AAIWTSLLGACRVHGRLELGESVAKHLL 531 (707)
Q Consensus 454 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 531 (707)
+|...+++..+...-.+ ..| . ..++..+...+...|++++|...+++++
T Consensus 84 ~A~~~~~~al~~~~~~~-----------------------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 84 AARRCFLEERELLASLP-----------------------------EDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHSC-----------------------------CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-----------------------------ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55554444333211011 011 0 2334445555555555555555555555
Q ss_pred ccC--CCCc----hhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 532 ELE--PENP----GAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 532 ~~~--p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
++. ..++ .++..++.+|...|++++|.+.+++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 432 1111 123455555666666666655555554
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.43 E-value=1.5e-06 Score=73.89 Aligned_cols=99 Identities=11% Similarity=0.078 Sum_probs=90.2
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 043060 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547 (707)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 547 (707)
.+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++..|.++.++..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 35677888999999999999999999986 5566 488999999999999999999999999999999999999999999
Q ss_pred hhhcCChhhHHHHHHHHhhCC
Q 043060 548 YAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~~~ 568 (707)
|...|++++|.+.+++..+..
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999988754
No 151
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.43 E-value=1.5e-06 Score=92.19 Aligned_cols=120 Identities=10% Similarity=-0.005 Sum_probs=64.5
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhc
Q 043060 373 WTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNH 448 (707)
Q Consensus 373 ~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~ 448 (707)
+..+...|.+.|++++|.+.|++.. ..+..+|..+..+|.+.|++++|++.|++..+ +.|+. .++..+..++..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 3444555666666666666666542 33455666666666666666666666666666 34433 355556666666
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH--HHHcCCHHHHHHHHH
Q 043060 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL--LGRAGLFDEAEALLK 496 (707)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 496 (707)
.|++++|.+.|+++.+... .+...+..+..+ +.+.|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHST--TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666666666554311 122233333333 555566666666555
No 152
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.42 E-value=7.2e-06 Score=81.00 Aligned_cols=164 Identities=9% Similarity=-0.034 Sum_probs=121.4
Q ss_pred HHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--
Q 043060 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTL------ASWNAMISGLAMHGKADKALSLFSRMIGEGL---QPD-- 435 (707)
Q Consensus 370 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~-- 435 (707)
...+...+..+...|++++|.+.+++.. .... ..+..+...+...|++++|+..|++..+... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3345566778889999999998887542 1111 2344456667788999999999999886321 122
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHhC-C------CCCC
Q 043060 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK-----LQHYGCMVDLLGRAGLFDEAEALLKTM-E------MKPD 503 (707)
Q Consensus 436 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~------~~p~ 503 (707)
..+++.+...|...|++++|..+|+++.+.....|+ ...+..+...|.+.|++++|++.+++. . ....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 237888899999999999999999988732212222 257888999999999999999999875 1 1112
Q ss_pred -HHHHHHHHHHHHhcCChhHH-HHHHHHHHcc
Q 043060 504 -AAIWTSLLGACRVHGRLELG-ESVAKHLLEL 533 (707)
Q Consensus 504 -~~~~~~ll~~~~~~g~~~~A-~~~~~~~~~~ 533 (707)
..+|..+...+...|++++| ...+++++++
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 67889999999999999999 7778888764
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.41 E-value=1.9e-06 Score=72.76 Aligned_cols=109 Identities=11% Similarity=-0.043 Sum_probs=76.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACR 515 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~ 515 (707)
.+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|++.+++. ...|+ ...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444455555666666666666665542 2234566667777777777777777777765 44554 778888888999
Q ss_pred hcCChhHHHHHHHHHHccC------CCCchhHHHHHHHh
Q 043060 516 VHGRLELGESVAKHLLELE------PENPGAYVLLSNMY 548 (707)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~ 548 (707)
..|++++|...++++++++ |.++.....+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 9999999999999999988 77777766666554
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.41 E-value=1.7e-06 Score=71.60 Aligned_cols=99 Identities=10% Similarity=0.105 Sum_probs=88.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 548 (707)
....+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|.++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3456777888999999999999999986 4445 5888999999999999999999999999999999999999999999
Q ss_pred hhcCChhhHHHHHHHHhhCCC
Q 043060 549 AGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~~~ 569 (707)
...|++++|.+.+++..+.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHhhHHHHHHHHHHHHHcCC
Confidence 999999999999999887543
No 155
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.40 E-value=4.9e-06 Score=76.82 Aligned_cols=117 Identities=12% Similarity=0.023 Sum_probs=80.4
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCC
Q 043060 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-------EMKPD-AAIWTSLLGACRVHGR 519 (707)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~ 519 (707)
..|++++|.+.++.+.. ........+..+...|...|++++|.+.+++. +..|. ..++..+...+...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 34566666664433322 11123455666666677777777776666654 22222 5678888899999999
Q ss_pred hhHHHHHHHHHHcc---CCCC----chhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 520 LELGESVAKHLLEL---EPEN----PGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 520 ~~~A~~~~~~~~~~---~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
+++|...+++++++ .+++ ..++..++.+|...|++++|.+.+++..+
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999886 3423 35688999999999999999999988864
No 156
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.40 E-value=2e-05 Score=78.20 Aligned_cols=193 Identities=13% Similarity=0.164 Sum_probs=98.3
Q ss_pred HHHHhHHhhHHHhcC-CHHHHHHHHhcCC---CCChHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHCCCCCCH-hHHHHH
Q 043060 370 VSLWTSLIDMYAKCG-NIKAAEQVFDGMG---YKTLASWNAMISGLAMH-G-KADKALSLFSRMIGEGLQPDD-ITFVGV 442 (707)
Q Consensus 370 ~~~~~~li~~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~p~~-~t~~~l 442 (707)
..+|+.--..+...| .+++++++++.+. .++..+|+.-...+.+. + ++++++++++++.+ ..|.. ..+..-
T Consensus 88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~--~dpkNy~AW~~R 165 (349)
T 3q7a_A 88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL--PDPKNYHTWAYL 165 (349)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS--SCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 333444333333444 2455555444432 22444454444444443 4 45555555555554 23322 233332
Q ss_pred HHHHhccCCHH--------HHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC-------HHHHHHHHHhC-CCCCC-HH
Q 043060 443 LSACNHAGLLD--------IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL-------FDEAEALLKTM-EMKPD-AA 505 (707)
Q Consensus 443 l~a~~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~~-~~~p~-~~ 505 (707)
.....+.|.++ +++++++.+++. .+-+...|+....++.+.++ ++++++.++++ ...|+ ..
T Consensus 166 ~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~S 243 (349)
T 3q7a_A 166 HWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS 243 (349)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHH
Confidence 22222222222 555666655542 22355555555555555554 56666666554 33443 66
Q ss_pred HHHHHHHHHHhcCCh--------------------hHHHHHHHHHHccC------CCCchhHHHHHHHhhhcCChhhHHH
Q 043060 506 IWTSLLGACRVHGRL--------------------ELGESVAKHLLELE------PENPGAYVLLSNMYAGAGRWDDVAT 559 (707)
Q Consensus 506 ~~~~ll~~~~~~g~~--------------------~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~ 559 (707)
.|+-+-..+.+.|+. .........+.... +..+.+...|+++|...|+.++|.+
T Consensus 244 aW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~ 323 (349)
T 3q7a_A 244 AWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAK 323 (349)
T ss_dssp HHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHH
Confidence 676666666555543 22222222222222 4677788899999999999999999
Q ss_pred HHHHHhh
Q 043060 560 IRTRLND 566 (707)
Q Consensus 560 ~~~~m~~ 566 (707)
+++.+.+
T Consensus 324 ~~~~l~~ 330 (349)
T 3q7a_A 324 VFEKLSS 330 (349)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999864
No 157
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.38 E-value=2.1e-06 Score=71.94 Aligned_cols=97 Identities=23% Similarity=0.347 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhh
Q 043060 472 LQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549 (707)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 549 (707)
...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|.++.++..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999986 3344 47889999999999999999999999999999999999999999999
Q ss_pred hcCChhhHHHHHHHHhhCC
Q 043060 550 GAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 550 ~~g~~~~a~~~~~~m~~~~ 568 (707)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999988754
No 158
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.38 E-value=2.7e-06 Score=75.56 Aligned_cols=65 Identities=15% Similarity=0.114 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 504 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
..+|..+..++...|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 56888899999999999999999999999999999999999999999999999999999987743
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.38 E-value=2.6e-06 Score=75.92 Aligned_cols=107 Identities=8% Similarity=-0.018 Sum_probs=78.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACR 515 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~ 515 (707)
.+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|++.|++. ...|+ ...|..+..++.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4555555566666666666666666542 2235566777777778888888888877775 44555 888999999999
Q ss_pred hcCChhHHHHHHHHHHccCCCCchhHHHHHH
Q 043060 516 VHGRLELGESVAKHLLELEPENPGAYVLLSN 546 (707)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 546 (707)
..|++++|...++++++++|+++..+...+.
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 9999999999999999999999886665543
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=7.5e-06 Score=71.04 Aligned_cols=78 Identities=19% Similarity=0.061 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhh
Q 043060 473 QHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAG 550 (707)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 550 (707)
..|..+...|...|++++|++.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..+..+..+
T Consensus 66 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 66 VLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 34445555556666666666666553 2334 366777777888888888888888888888888877777666665443
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=4e-06 Score=72.78 Aligned_cols=99 Identities=14% Similarity=0.059 Sum_probs=89.0
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHH
Q 043060 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL 544 (707)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 544 (707)
.+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|+++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 35677788888899999999999999886 66677 67889999999999999999999999999999999999999
Q ss_pred HHHhhhcCChhhHHHHHHHHhhCC
Q 043060 545 SNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 545 ~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
+.+|...|++++|.+.+++..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999988754
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.34 E-value=4.6e-06 Score=81.79 Aligned_cols=181 Identities=9% Similarity=-0.036 Sum_probs=112.4
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHH
Q 043060 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKADK 419 (707)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 419 (707)
.+...|+++.|...+..+++..+. +...+..+..+|.+.|++++|...+++... .+...|..+..+|...|++++
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 90 (281)
T 2c2l_A 13 RLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDE 90 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 333444444444444444444333 667788888899999999999999987643 366788889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043060 420 ALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498 (707)
Q Consensus 420 A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 498 (707)
|+..|++..+ ..|+.. .+...+....+ ..++..... ... .....+......+...+ .|+.++|++.+++.
T Consensus 91 A~~~~~~al~--l~p~~~~~~~~~~~~~~~---~~~~~~~~~-~~~-~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~a 161 (281)
T 2c2l_A 91 AIANLQRAYS--LAKEQRLNFGDDIPSALR---IAKKKRWNS-IEE-RRIHQESELHSYLTRLI--AAERERELEECQRN 161 (281)
T ss_dssp HHHHHHHHHH--HHHHTTCCCCSHHHHHHH---HHHHHHHHH-HHH-TCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGG
T ss_pred HHHHHHHHHH--hCccchhhHHHHHHHHHH---HHHHHHHHH-HHH-HHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhh
Confidence 9999999887 344321 11111111111 111112111 222 24445555555554433 68999999988875
Q ss_pred -CCCCCH-HHHHHHHHHHHhc-CChhHHHHHHHHHHccC
Q 043060 499 -EMKPDA-AIWTSLLGACRVH-GRLELGESVAKHLLELE 534 (707)
Q Consensus 499 -~~~p~~-~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~ 534 (707)
...|+. .....+...+... +.+++|.++|+++.+..
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 162 HEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp GTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred hccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 667764 4444444445444 67888999999887743
No 163
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.34 E-value=1.8e-06 Score=74.63 Aligned_cols=93 Identities=16% Similarity=0.063 Sum_probs=74.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCChhHHHHHHHHHHcc-------
Q 043060 475 YGCMVDLLGRAGLFDEAEALLKTM-EMKPD-------------AAIWTSLLGACRVHGRLELGESVAKHLLEL------- 533 (707)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------- 533 (707)
+......+.+.|++++|++.|++. .+.|+ ...|..+..++.+.|++++|+..+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 334455566666777776666664 22222 338999999999999999999999999999
Q ss_pred CCCCchhH----HHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 534 EPENPGAY----VLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 534 ~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
+|++..+| +.++.++...|++++|+..|++..+.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999 99999999999999999999998764
No 164
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.34 E-value=5.7e-05 Score=74.62 Aligned_cols=179 Identities=14% Similarity=0.103 Sum_probs=103.1
Q ss_pred HHHHHHHHhcC---CCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCC-HHHHHHH
Q 043060 386 IKAAEQVFDGM---GYKTLASWNAMISGLAMHG--KADKALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGL-LDIGRQY 458 (707)
Q Consensus 386 ~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~-~~~a~~~ 458 (707)
++++..+++.+ ..++..+|+.-.-.+...| ++++++..++++.+ ..|.. ..++.-.......|. +++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 34444444443 2345555655555555555 35666666666666 33332 244444444445555 4666666
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHHc--------------CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc-----
Q 043060 459 FNAMIQDYKISPKLQHYGCMVDLLGRA--------------GLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVH----- 517 (707)
Q Consensus 459 ~~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~----- 517 (707)
++.+++. .+-|...|+....++.+. +.++++++.+++. ...|+ ...|+-+-..+...
T Consensus 168 ~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 6666652 233555555555444443 3467777777664 34454 77776555555444
Q ss_pred ------CChhHHHHHHHHHHccCCCCchhHHHHHHH---hhhcCChhhHHHHHHHHhhCC
Q 043060 518 ------GRLELGESVAKHLLELEPENPGAYVLLSNM---YAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 518 ------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~~ 568 (707)
+.++++++.++++++++|++.-++..++.. ....|..++....+.++.+-+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 457888888999999999875544444332 234677778888888887644
No 165
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.32 E-value=7.7e-06 Score=72.59 Aligned_cols=127 Identities=13% Similarity=0.043 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 043060 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480 (707)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 480 (707)
..|..+...+...|++++|+..|++..+ ..| +..++..+...+...|++++|...++...+. .+.+...+..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 3566677777788888888888888777 344 3456777777788888888888888887763 2345677778888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC-HHHHH--HHHHHHHhcCChhHHHHHHHHHHc
Q 043060 481 LLGRAGLFDEAEALLKTM-EMKPD-AAIWT--SLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~--~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
+|.+.|++++|.+.+++. ...|+ ...+. .++..+...|++++|...+++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888888875 33443 44553 334446778888888888877654
No 166
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.31 E-value=2.9e-06 Score=71.82 Aligned_cols=91 Identities=16% Similarity=0.215 Sum_probs=66.3
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC---chhHHHHHHHhh
Q 043060 478 MVDLLGRAGLFDEAEALLKTM-EMKPD-A---AIWTSLLGACRVHGRLELGESVAKHLLELEPEN---PGAYVLLSNMYA 549 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~ 549 (707)
+...+.+.|++++|.+.|++. ...|+ . ..+..+...+...|++++|...++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 455666777777777777764 22333 2 467777777888888888888888888888877 666788888888
Q ss_pred hcCChhhHHHHHHHHhhCC
Q 043060 550 GAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 550 ~~g~~~~a~~~~~~m~~~~ 568 (707)
..|++++|...++++.+..
T Consensus 88 ~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHHHC
Confidence 8888888888888777643
No 167
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.30 E-value=0.00017 Score=71.53 Aligned_cols=230 Identities=13% Similarity=0.111 Sum_probs=152.7
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCChh-hHHhHHHHHhccC-CchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhc-C-
Q 043060 309 YTHTSDYKEALMLFRQMLQSNIEPNDV-TFLSVLPACAYLG-ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC-G- 384 (707)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~-g- 384 (707)
..+.+..++|++++.+++.. .|+.. .++.--..+...+ .++++...+..++...+. +..+|+.-...+.+. +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK--ny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK--SYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHCCS
T ss_pred HHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhcCC
Confidence 33444556677777777664 34333 3444444444555 467777777777776666 677777766666665 6
Q ss_pred CHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCC-
Q 043060 385 NIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKAD--------KALSLFSRMIGEGLQP-DDITFVGVLSACNHAGL- 451 (707)
Q Consensus 385 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~- 451 (707)
++++++++++++.. +|..+|+--.-.+.+.|.++ ++++.++++++ ..| |...++.......+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcccc
Confidence 77888888888754 35667776666665555555 89999999988 445 44467777667777665
Q ss_pred ------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCH--------------------HHHHHHHHhC-CC----
Q 043060 452 ------LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF--------------------DEAEALLKTM-EM---- 500 (707)
Q Consensus 452 ------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~-~~---- 500 (707)
+++++++++.++. ..+-|...|+-+-..+.+.|+. .+..++..++ ..
T Consensus 218 ~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred ccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence 7888888888876 3344777888877788777764 3334444443 11
Q ss_pred ---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-ccCCCCchhHHHHHH
Q 043060 501 ---KPDAAIWTSLLGACRVHGRLELGESVAKHLL-ELEPENPGAYVLLSN 546 (707)
Q Consensus 501 ---~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~~ 546 (707)
.+....+..|+..|...|+.++|.++++.+. +.+|-....|...+.
T Consensus 296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 2457888899999999999999999999987 678866555554433
No 168
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.30 E-value=3.5e-06 Score=71.20 Aligned_cols=98 Identities=10% Similarity=0.107 Sum_probs=88.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 548 (707)
+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567778889999999999999999986 4445 4888999999999999999999999999999999999999999999
Q ss_pred hhcCChhhHHHHHHHHhhCC
Q 043060 549 AGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~~ 568 (707)
...|++++|.+.+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999988754
No 169
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.28 E-value=5.5e-06 Score=83.56 Aligned_cols=112 Identities=13% Similarity=0.069 Sum_probs=67.8
Q ss_pred CCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCC---------------hHHHHHHHH
Q 043060 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKT---------------LASWNAMIS 409 (707)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~---------------~~~~~~li~ 409 (707)
++++.|...+.......+. +...+..+...|.+.|++++|...|++.. ..+ ...|..+..
T Consensus 127 ~~~~~A~~~~~~a~~~~p~--~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLE--QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHHHHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333322 67788999999999999999999998763 222 356666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhH
Q 043060 410 GLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMI 463 (707)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 463 (707)
+|.+.|++++|+..|++.++ +.|+. ..+..+..++...|++++|...|+.+.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 257 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALE--LDSNNEKGLSRRGEAHLAVNDFELARADFQKVL 257 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666666666666666666 33432 244444444445555555555444444
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.27 E-value=4.5e-06 Score=71.50 Aligned_cols=99 Identities=8% Similarity=-0.133 Sum_probs=68.4
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 043060 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGA 513 (707)
Q Consensus 436 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~ 513 (707)
...+..+...+...|++++|...|+...+. .+.+...|..+..+|...|++++|...+++. ...|+ ...|..+...
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 345555566666666666666666665542 2234566666777777777777777777765 33444 7788888888
Q ss_pred HHhcCChhHHHHHHHHHHccCCC
Q 043060 514 CRVHGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~p~ 536 (707)
+...|++++|...+++++++.|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888888776
No 171
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.25 E-value=0.00013 Score=72.04 Aligned_cols=192 Identities=10% Similarity=0.021 Sum_probs=130.8
Q ss_pred chHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcC--CHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCC-HHHHHHH
Q 043060 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG--NIKAAEQVFDGMG---YKTLASWNAMISGLAMHGK-ADKALSL 423 (707)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~ 423 (707)
++.+..++..+....+. +..+|+.-.-.+.+.| .++++..+++++. .+|..+|+--.-.+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK--ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK--SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 45666667777776665 6777777666666777 4788888888763 4577788877777777777 5888888
Q ss_pred HHHHHHCCCCCCH-hHHHHHHHHHhcc--------------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc---
Q 043060 424 FSRMIGEGLQPDD-ITFVGVLSACNHA--------------GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA--- 485 (707)
Q Consensus 424 ~~~m~~~g~~p~~-~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--- 485 (707)
++++++ ..|+. ..++.....+.+. +.++++++++..... -.+-|...|+-+-..+.+.
T Consensus 168 ~~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 168 TDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCc
Confidence 888887 44443 3555444444333 457888888888775 3344667777665555554
Q ss_pred --------CCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh
Q 043060 486 --------GLFDEAEALLKTM-EMKPDAAIWTSLLGAC-----RVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548 (707)
Q Consensus 486 --------g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~-----~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 548 (707)
+.++++++.++++ ...||. .|..+..+. ...|..++....+.++.+++|...+-|..+...+
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 4578888888886 567774 444322222 2357788899999999999998777776665444
No 172
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.23 E-value=9.4e-07 Score=73.62 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=61.4
Q ss_pred HcCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHH
Q 043060 484 RAGLFDEAEALLKTM-EM---KPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVA 558 (707)
Q Consensus 484 ~~g~~~~A~~~~~~~-~~---~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 558 (707)
..|++++|+..|++. .. .|+ ..+|..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 356777777777765 33 244 5677778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhhC
Q 043060 559 TIRTRLNDK 567 (707)
Q Consensus 559 ~~~~~m~~~ 567 (707)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888877654
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.20 E-value=6.2e-06 Score=69.01 Aligned_cols=98 Identities=11% Similarity=-0.013 Sum_probs=68.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 043060 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRV 516 (707)
Q Consensus 439 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~ 516 (707)
+..+...+.+.|++++|...|+.+.+. .+.+...|..+..++.+.|++++|+..+++. ...|+ ...|..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344455666677777777777776652 2335667777777888888888888888775 45565 7788888888999
Q ss_pred cCChhHHHHHHHHHHccCCCCc
Q 043060 517 HGRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~p~~~ 538 (707)
.|++++|...++++++.+|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999888654
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.19 E-value=9.9e-06 Score=66.16 Aligned_cols=99 Identities=13% Similarity=0.032 Sum_probs=70.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP---DAAIWTSLLGA 513 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~ 513 (707)
.+..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4555566666677777777777666552 2235566677777777888888888877775 3334 46778888888
Q ss_pred HHhc-CChhHHHHHHHHHHccCCCCc
Q 043060 514 CRVH-GRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 514 ~~~~-g~~~~A~~~~~~~~~~~p~~~ 538 (707)
+... |++++|.+.++++++..|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888999999888888888654
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.19 E-value=1.1e-05 Score=85.15 Aligned_cols=145 Identities=11% Similarity=0.024 Sum_probs=106.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 043060 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479 (707)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 479 (707)
....|..+...|.+.|++++|+..|++.++ +.|+...+ .-+...+ ... .....|..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~-~~~--------~~~~~~~nla 324 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL-----------SEKESKA-SES--------FLLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC-----------CHHHHHH-HHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC-----------ChHHHHH-HHH--------HHHHHHHHHH
Confidence 345788888889999999999999998887 34443210 0011110 000 1235677788
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhH
Q 043060 480 DLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557 (707)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 557 (707)
.+|.+.|++++|+..+++. ...|+ ...|..+..++...|++++|+..|+++++++|++..++..++.++.+.|+++++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998886 45554 888999999999999999999999999999999999999999999999999988
Q ss_pred HH-HHHHHhh
Q 043060 558 AT-IRTRLND 566 (707)
Q Consensus 558 ~~-~~~~m~~ 566 (707)
.+ .++.|..
T Consensus 405 ~~~~~~~~f~ 414 (457)
T 1kt0_A 405 DRRIYANMFK 414 (457)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 74 4555543
No 176
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.18 E-value=2.3e-06 Score=78.95 Aligned_cols=146 Identities=11% Similarity=-0.015 Sum_probs=81.7
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CCh----------------
Q 043060 341 LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTL---------------- 401 (707)
Q Consensus 341 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~---------------- 401 (707)
.......|.++.+++.+......... ....+..+...|.+.|++++|...|++... .+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQ--SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -----------CCCSGGGCCHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 33445566677777666654433322 455678889999999999999999987632 232
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 043060 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480 (707)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 480 (707)
..|..+..+|...|++++|+..+++.++ ..|+ ...+..+..++...|++++|...|+...+. .+.+...+..+..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHH
Confidence 5666666777777777777777777766 3443 335555555666666666666666655542 1123344444444
Q ss_pred HHHHcCCHHHHH
Q 043060 481 LLGRAGLFDEAE 492 (707)
Q Consensus 481 ~~~~~g~~~~A~ 492 (707)
++...|+.+++.
T Consensus 165 ~~~~~~~~~~~~ 176 (198)
T 2fbn_A 165 CVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.16 E-value=5.8e-06 Score=69.84 Aligned_cols=96 Identities=16% Similarity=0.161 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC-------chhHHH
Q 043060 473 QHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN-------PGAYVL 543 (707)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~ 543 (707)
..+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|.+ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45667778888888999998888875 3334 47888889999999999999999999999988766 788999
Q ss_pred HHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 544 LSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 544 l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
++.+|...|++++|.+.+++..+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC
Confidence 9999999999999999999988743
No 178
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.15 E-value=9.7e-05 Score=79.76 Aligned_cols=167 Identities=9% Similarity=0.029 Sum_probs=130.1
Q ss_pred HHHHHHHHhcCC---CCChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccC-
Q 043060 386 IKAAEQVFDGMG---YKTLASWNAMISGLAMHGK----------ADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAG- 450 (707)
Q Consensus 386 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g- 450 (707)
-++|.+.++++. ..+..+|+.--..+...|+ ++++++.++++.+ ..|... +|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccc
Confidence 355666666553 3455677766666666666 8889999998888 556554 6777777777788
Q ss_pred -CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcC-CHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc---------
Q 043060 451 -LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAG-LFDEAEALLKTM-EMKPD-AAIWTSLLGACRVH--------- 517 (707)
Q Consensus 451 -~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~--------- 517 (707)
+++++.+.++.+.+. -+-+...|+.-..++.+.| .++++++.++++ ...|+ ...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 779999999998873 3346777888778888888 889999998887 56665 88898888877663
Q ss_pred -----CChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhh
Q 043060 518 -----GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 518 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 556 (707)
+.++++.+.++++++.+|++..+|..+..++.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999998665
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=2e-05 Score=82.73 Aligned_cols=164 Identities=9% Similarity=-0.097 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHh----HHHHHHHHHhccCCHHHHHHHHHHhHHh---cCCCC-ChH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGEG-LQPDDI----TFVGVLSACNHAGLLDIGRQYFNAMIQD---YKISP-KLQ 473 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~ 473 (707)
++..++..|...|++++|.+.+.++...- ..++.. +.+.+-..+...|+.+++..++...... .+..+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35667788888888888888888766521 112221 2223333445678888888888766542 12222 245
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccC---CCC----c
Q 043060 474 HYGCMVDLLGRAGLFDEAEALLKTM-----E--MKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELE---PEN----P 538 (707)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~-----~--~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---p~~----~ 538 (707)
.+..+...|...|++++|..++++. . .+|. ..++..++..|...|++++|...+++++... +.+ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7778899999999999999998875 1 1233 5688889999999999999999999988753 222 2
Q ss_pred hhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 539 GAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
..+..++..+...|++++|...+.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4567788889999999999988877753
No 180
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.14 E-value=1.1e-05 Score=68.22 Aligned_cols=100 Identities=13% Similarity=0.072 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 481 (707)
.|..+...+.+.|++++|++.|++.++ +.|+.. .|..+..+|...|++++|++.|+..++.. |+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~---~~---------- 74 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG---RE---------- 74 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HH----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC---cc----------
Confidence 455566666666666666666666665 444432 45555555555555555555555544310 00
Q ss_pred HHHcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 043060 482 LGRAGLFDEAEALLKTMEMKPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEP 535 (707)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 535 (707)
..++ ..+|..+..++...|++++|++.++++++..|
T Consensus 75 ------------------~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 75 ------------------TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp ------------------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred ------------------cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 0011 23566667777777888888888888777766
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.14 E-value=7.7e-06 Score=69.04 Aligned_cols=105 Identities=8% Similarity=0.034 Sum_probs=58.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC----CCC----HHHHHHHHH
Q 043060 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EM----KPD----AAIWTSLLG 512 (707)
Q Consensus 442 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ll~ 512 (707)
+...+...|++++|...|+...+. .+.+...+..+...|.+.|++++|...+++. .. .++ ..+|..+..
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 333444444444444444444331 1223344444555555555555555555543 11 122 556777777
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhh
Q 043060 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549 (707)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 549 (707)
.+...|++++|...++++++..| ++.....+..+..
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 88888888888888888888877 5666666555543
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.11 E-value=1.5e-05 Score=70.17 Aligned_cols=93 Identities=18% Similarity=0.139 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCC------CCch
Q 043060 474 HYGCMVDLLGRAGLFDEAEALLKTM----EMKPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEP------ENPG 539 (707)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p------~~~~ 539 (707)
.+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...++++++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444555555566666665555543 00111 44666777777888888888888888776532 1235
Q ss_pred hHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 540 AYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 540 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
++..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677888888899999999888887764
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.10 E-value=3.6e-05 Score=64.89 Aligned_cols=104 Identities=16% Similarity=0.065 Sum_probs=67.3
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHH
Q 043060 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPK-LQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD----AAIWTSLLGACR 515 (707)
Q Consensus 442 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~ 515 (707)
+...+...|++++|...|+.+.+...-.+. ...+..+..+|.+.|++++|.+.+++. ...|+ ..++..+...+.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344455566666666666665543211110 135556667777777777777777765 22333 556777888888
Q ss_pred hcCChhHHHHHHHHHHccCCCCchhHHHHH
Q 043060 516 VHGRLELGESVAKHLLELEPENPGAYVLLS 545 (707)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 545 (707)
..|++++|...++++++..|+++.+.....
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 899999999999999998888766554443
No 184
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.08 E-value=1.8e-05 Score=83.37 Aligned_cols=124 Identities=10% Similarity=0.111 Sum_probs=90.7
Q ss_pred HhccCCHHHHHHHHHHhHHhcC--CC---C-ChHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 043060 446 CNHAGLLDIGRQYFNAMIQDYK--IS---P-KLQHYGCMVDLLGRAGLFDEAEALLKTM---------EMKPD-AAIWTS 509 (707)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~--~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 509 (707)
+..+|++++|..++++..+... +. | ...+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3455666666666655544321 11 1 2246777777788888888887777664 34466 678999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHc-----cCCCCchh---HHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 510 LLGACRVHGRLELGESVAKHLLE-----LEPENPGA---YVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 510 ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
|...|..+|++++|+.+++++++ ++|++|.+ ...|..++...|++++|..++.++++.-.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999986 47777654 45788889999999999999999987653
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.08 E-value=2.5e-05 Score=68.63 Aligned_cols=131 Identities=12% Similarity=0.077 Sum_probs=74.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCH----hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHH
Q 043060 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQ-PDD----ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK----LQH 474 (707)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~ 474 (707)
+..+...|...|++++|+..+++..+.... ++. .++..+...+...|++++|...++...+...-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444444455555555555555554431000 111 24445555556666666666666655432111111 335
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 043060 475 YGCMVDLLGRAGLFDEAEALLKTM-------EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELE 534 (707)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 534 (707)
+..+...+...|++++|.+.+++. +..+. ..++..+...+...|++++|...+++++++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 556667777777777777777664 11111 4567778888888999999999988887754
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.08 E-value=8.4e-06 Score=72.31 Aligned_cols=123 Identities=13% Similarity=0.073 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHH
Q 043060 401 LASWNAMISGLAMHGKADKALSLFSRMIGEG------LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQH 474 (707)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 474 (707)
...|......+.+.|++++|+..|++.+..- -.|+...+ ..+ .+.+...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~-----~~~~~~~ 65 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VEL-----DRKNIPL 65 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHH-----HHTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHH-----HHHHHHH
Confidence 3456667777777778888877777776520 01111100 000 0123457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc-hhHHHHHHHh
Q 043060 475 YGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENP-GAYVLLSNMY 548 (707)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~ 548 (707)
|..+..+|.+.|++++|+..+++. ...|+ ...|..+..++...|++++|...++++++++|+++ .....+..+.
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 778888899999999999998885 55565 88999999999999999999999999999999887 4444554443
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.06 E-value=1.8e-05 Score=80.72 Aligned_cols=137 Identities=11% Similarity=0.025 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHH
Q 043060 401 LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMV 479 (707)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 479 (707)
...|..+...+.+.|++++|+..|++.++ ..|+.. .....+++. ...| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~--~~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLR--YVEGSR----------AAAEDADGA----------KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHH----------HHSCHHHHG----------GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhhcCc----------cccChHHHH----------HHHHHHHHHHHHHH
Confidence 44678888888899999999999988876 111110 000111111 1112 456788889
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhH
Q 043060 480 DLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557 (707)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 557 (707)
.+|.+.|++++|++.+++. ...|+ ...|..+..++...|++++|+..++++++++|++..++..+..++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986 66675 889999999999999999999999999999999999999999999988888877
Q ss_pred HH
Q 043060 558 AT 559 (707)
Q Consensus 558 ~~ 559 (707)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.05 E-value=1.8e-06 Score=70.81 Aligned_cols=93 Identities=12% Similarity=0.054 Sum_probs=78.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC------chhHH
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN------PGAYV 542 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 542 (707)
+...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777888888999999999988885 4455 48889999999999999999999999999999998 77888
Q ss_pred HHHHHhhhcCChhhHHHHHHH
Q 043060 543 LLSNMYAGAGRWDDVATIRTR 563 (707)
Q Consensus 543 ~l~~~~~~~g~~~~a~~~~~~ 563 (707)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 899999988888887665443
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.05 E-value=3.7e-06 Score=69.93 Aligned_cols=93 Identities=17% Similarity=0.168 Sum_probs=64.9
Q ss_pred cCCHHHHHHHHHHhHHhcC--CCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHH
Q 043060 449 AGLLDIGRQYFNAMIQDYK--ISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGE 524 (707)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~ 524 (707)
.|++++|...|++..+. + -+.+...+..+..+|.+.|++++|++.|++. ...|+ ..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45566666666665531 1 1123456677777788888888888888775 44555 778888888999999999999
Q ss_pred HHHHHHHccCCCCchhHH
Q 043060 525 SVAKHLLELEPENPGAYV 542 (707)
Q Consensus 525 ~~~~~~~~~~p~~~~~~~ 542 (707)
..++++++..|+++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999999888876543
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.04 E-value=1e-05 Score=81.62 Aligned_cols=149 Identities=10% Similarity=0.006 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 043060 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481 (707)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 481 (707)
..|..+...+.+.|++++|+..|++.+. ..|+... +...|+.+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 3566777788888999999999999887 5565542 223344444433221 1367778889
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh-hhcCChhhHH
Q 043060 482 LGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY-AGAGRWDDVA 558 (707)
Q Consensus 482 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~ 558 (707)
|.+.|++++|+..+++. ...|+ ...|..+..++...|++++|+..++++++++|+++.++..|..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999885 45564 788999999999999999999999999999999999999888884 4567778888
Q ss_pred HHHHHHhhCCCc
Q 043060 559 TIRTRLNDKGMK 570 (707)
Q Consensus 559 ~~~~~m~~~~~~ 570 (707)
..+++|.+....
T Consensus 320 ~~~~~~l~~~p~ 331 (338)
T 2if4_A 320 EMYKGIFKGKDE 331 (338)
T ss_dssp ------------
T ss_pred HHHHHhhCCCCC
Confidence 899888766543
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.03 E-value=5.5e-06 Score=83.64 Aligned_cols=115 Identities=12% Similarity=0.000 Sum_probs=89.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 517 (707)
.+..+...+.+.|++++|...|+...+. .|+... +...|+.+++...+. ..+|..+..++.+.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence 3555667788889999999998887653 233221 233444555544332 24788999999999
Q ss_pred CChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 518 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+...
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p 295 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999876554
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.01 E-value=1.3e-05 Score=69.20 Aligned_cols=115 Identities=17% Similarity=0.054 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC-CChHHHHHHHHH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS-PKLQHYGCMVDL 481 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~ 481 (707)
.+......+.+.|++++|+..|++.++ +.|+...- ++. ... .+...|..+..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~--------------~a~----------~~~~~~a~a~~n~g~a 66 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPE--------------EAF----------DHAGFDAFCHAGLAEA 66 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTT--------------SCC----------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcch--------------hhh----------hhccchHHHHHHHHHH
Confidence 455566667777888888888888777 45541100 000 000 012255555566
Q ss_pred HHHcCCHHHHHHHHHhC--------CCCCC-HHHH----HHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHH
Q 043060 482 LGRAGLFDEAEALLKTM--------EMKPD-AAIW----TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVL 543 (707)
Q Consensus 482 ~~~~g~~~~A~~~~~~~--------~~~p~-~~~~----~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 543 (707)
+.+.|++++|+..+++. .+.|+ ...| .....++...|++++|+..|+++++++|++...+..
T Consensus 67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 66666666666655553 34887 7788 999999999999999999999999999988765433
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=7e-05 Score=78.45 Aligned_cols=158 Identities=9% Similarity=0.012 Sum_probs=119.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC----------------HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh
Q 043060 409 SGLAMHGKADKALSLFSRMIGEGLQPD----------------DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL 472 (707)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 472 (707)
..+.+.|++++|++.|.++.+..-... ...+..+...|...|++++|.+++..+.+..+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 446678899999999999887422211 1136788899999999999999999887654433333
Q ss_pred H----HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccC------
Q 043060 473 Q----HYGCMVDLLGRAGLFDEAEALLKTM-------EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELE------ 534 (707)
Q Consensus 473 ~----~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------ 534 (707)
. ..+.+...+...|++++|.+++++. +..+. ..++..|...+...|++++|...+++++..-
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2 2334445556678999999988764 23333 6688899999999999999999999987631
Q ss_pred CCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 535 PENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 535 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
|....++..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22345888999999999999999999988764
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.94 E-value=4.9e-05 Score=77.51 Aligned_cols=112 Identities=8% Similarity=0.065 Sum_probs=82.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD-AAIWTSLLGACRV 516 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~ 516 (707)
.+..+...+.+.|++++|...|+++.+.. +. .......+++. ...|. ..+|..+..++.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~----------~~~~~~~~~~~------~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EG----------SRAAAEDADGA------KLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HH----------HHHHSCHHHHG------GGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hc----------CccccChHHHH------HHHHHHHHHHHHHHHHHHh
Confidence 45566666667777777777776665410 00 00000111111 12333 6789999999999
Q ss_pred cCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 517 HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+..
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999988754
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.94 E-value=3.2e-05 Score=62.01 Aligned_cols=65 Identities=20% Similarity=0.240 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 503 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|++.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 37889999999999999999999999999999999999999999999999999999999988764
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.92 E-value=2.5e-05 Score=64.53 Aligned_cols=78 Identities=14% Similarity=0.143 Sum_probs=67.1
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 490 EAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 490 ~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
+|++.|++. ...|+ ...|..+...+...|++++|+..++++++.+|+++.+|..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666654 45565 7889999999999999999999999999999999999999999999999999999999988764
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.91 E-value=6.8e-06 Score=70.84 Aligned_cols=87 Identities=16% Similarity=0.147 Sum_probs=70.0
Q ss_pred HHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC----------hhHHHHHHHHHHccCCCCchhHHHHHHHhhh
Q 043060 483 GRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGR----------LELGESVAKHLLELEPENPGAYVLLSNMYAG 550 (707)
Q Consensus 483 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 550 (707)
.|.+.+++|.+.+++. ...|+ ...|..+..++...++ +++|+..|+++++++|++..+|..++++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3455677777777664 44554 6777777777777665 4599999999999999999999999999998
Q ss_pred cC-----------ChhhHHHHHHHHhhCCC
Q 043060 551 AG-----------RWDDVATIRTRLNDKGM 569 (707)
Q Consensus 551 ~g-----------~~~~a~~~~~~m~~~~~ 569 (707)
.| ++++|++.|++..+...
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 75 89999999999988654
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.91 E-value=3.7e-05 Score=60.02 Aligned_cols=81 Identities=25% Similarity=0.326 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhh
Q 043060 472 LQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549 (707)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 549 (707)
...+..+...|.+.|++++|++.+++. ...| +..+|..+...+...|++++|...++++++++|.++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456677778888888888888888875 3344 47788889999999999999999999999999999999999888887
Q ss_pred hcC
Q 043060 550 GAG 552 (707)
Q Consensus 550 ~~g 552 (707)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 199
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.85 E-value=0.0001 Score=77.68 Aligned_cols=111 Identities=13% Similarity=0.086 Sum_probs=62.9
Q ss_pred CchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CC---------------hHHHHHHHHH
Q 043060 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KT---------------LASWNAMISG 410 (707)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~---------------~~~~~~li~~ 410 (707)
+++.|...+.......+. ....+..+...|.+.|++++|...|++... .+ ...|..+..+
T Consensus 249 ~~~~A~~~~~~~~~~~~~--~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLE--QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEECCCCGGGSCHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333332222 566788899999999999999999987631 22 3455555555
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhH
Q 043060 411 LAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMI 463 (707)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 463 (707)
|.+.|++++|+..|++.++ +.|+. ..|..+..++...|++++|...|+.+.
T Consensus 327 ~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al 378 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALG--LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 5566666666666655555 33332 234444444444444444444444443
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.74 E-value=0.00014 Score=76.50 Aligned_cols=114 Identities=13% Similarity=0.069 Sum_probs=89.2
Q ss_pred HHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc-----cCCCCc---hhHH
Q 043060 481 LLGRAGLFDEAEALLKTM---------EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLE-----LEPENP---GAYV 542 (707)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~~~ 542 (707)
.+..+|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|++| .++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 466789999999998874 23355 66899999999999999999999999986 356655 4688
Q ss_pred HHHHHhhhcCChhhHHHHHHHHhhCCCccCCcccEEeECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHH
Q 043060 543 LLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE 612 (707)
Q Consensus 543 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 612 (707)
.|+.+|...|++++|..++++..+.-.+ .-...||...++..++......+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998753211 012379998888777776665554
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.67 E-value=4.5e-05 Score=65.71 Aligned_cols=74 Identities=11% Similarity=0.133 Sum_probs=49.6
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc-----------CChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCCh
Q 043060 488 FDEAEALLKTM-EMKPD-AAIWTSLLGACRVH-----------GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554 (707)
Q Consensus 488 ~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 554 (707)
+++|+..|++. .+.|+ ..+|..+..+|... |++++|++.|+++++++|++...... +. ..
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a-l~------~~ 134 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS-LE------MT 134 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH-HH------HH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH-HH------HH
Confidence 34777777764 55665 66777777777766 48999999999999999987533222 22 22
Q ss_pred hhHHHHHHHHhhCC
Q 043060 555 DDVATIRTRLNDKG 568 (707)
Q Consensus 555 ~~a~~~~~~m~~~~ 568 (707)
++|.+++-.+-..+
T Consensus 135 ~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 135 AKAPQLHAEAYKQG 148 (158)
T ss_dssp HTHHHHHHHHHHSS
T ss_pred HhCHhccCcccccc
Confidence 45555555554443
No 202
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.66 E-value=0.00023 Score=73.79 Aligned_cols=116 Identities=14% Similarity=0.151 Sum_probs=87.7
Q ss_pred HHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc-----cCCCCc---hh
Q 043060 479 VDLLGRAGLFDEAEALLKTM---------EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLE-----LEPENP---GA 540 (707)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~ 540 (707)
+.-+.++|++++|++++++. +..|+ ..+++.|+.+|...|++++|+.+++++++ ++|++| ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455678888888887764 12233 56888999999999999999999999986 355555 46
Q ss_pred HHHHHHHhhhcCChhhHHHHHHHHhhCCCccCCcccEEeECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHH
Q 043060 541 YVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE 612 (707)
Q Consensus 541 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 612 (707)
+..|+.+|...|++++|..++++..+.-.. .-...||...++...|.+....|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999998753210 012479999998888888777665
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.63 E-value=0.0005 Score=74.15 Aligned_cols=151 Identities=11% Similarity=0.033 Sum_probs=123.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCC----------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 043060 415 GKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGL----------LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLG 483 (707)
Q Consensus 415 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 483 (707)
...++|++.+++++. ..|+.. .|+.--.++.+.|+ ++++.+.++.+.+. .+.+...|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 346789999999999 788876 45554555555566 99999999999873 4457788888888888
Q ss_pred HcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHHccCCCCchhHHHHHHHhhhc-------
Q 043060 484 RAG--LFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHG-RLELGESVAKHLLELEPENPGAYVLLSNMYAGA------- 551 (707)
Q Consensus 484 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 551 (707)
+.| ++++|++.++++ ...| +..+|+.-..+....| .++++.+.++++++.+|.|..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999997 4455 4889999999999999 899999999999999999999999999998774
Q ss_pred -------CChhhHHHHHHHHhhCCC
Q 043060 552 -------GRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 552 -------g~~~~a~~~~~~m~~~~~ 569 (707)
++++++.+++++..+...
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCC
Confidence 567888888888775443
No 204
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.62 E-value=0.00027 Score=55.33 Aligned_cols=69 Identities=17% Similarity=0.075 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCc
Q 043060 502 PDAAIWTSLLGACRVHGR---LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570 (707)
Q Consensus 502 p~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 570 (707)
+|+..|..+..++...++ .++|...++++++++|+++.+...++..+.+.|++++|+..|+++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 457888888888876555 799999999999999999999999999999999999999999999987663
No 205
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00019 Score=58.34 Aligned_cols=67 Identities=10% Similarity=0.037 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 503 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+...|..+...+...|++++|...++++++.+|+++.++..++.+|...|++++|++.+++..+...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 4678889999999999999999999999999999999999999999999999999999999987554
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.47 E-value=0.00033 Score=57.52 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=56.1
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 043060 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 455 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
+...|+...+ ..+.+...+..+...|.+.|++++|++.+++. ...|+ ...|..+...+...|++++|...++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555543 22235566777777777777777777777775 34454 67788888888888888888888888888
Q ss_pred cCCC
Q 043060 533 LEPE 536 (707)
Q Consensus 533 ~~p~ 536 (707)
+.|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 7764
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.46 E-value=0.0011 Score=56.60 Aligned_cols=86 Identities=7% Similarity=-0.121 Sum_probs=45.8
Q ss_pred HHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCCCchhHHHHHHHhhh----cCC
Q 043060 482 LGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRV----HGRLELGESVAKHLLELEPENPGAYVLLSNMYAG----AGR 553 (707)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~ 553 (707)
|...+..++|.+.|++.-..-+...+..|...|.. .+++++|.+.++++.+. .++.++..|+.+|.. .++
T Consensus 35 y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d 112 (138)
T 1klx_A 35 SNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKN 112 (138)
T ss_dssp TCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred HHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcC
Confidence 33333334444444433111234444555555544 45666666666666554 345566666666666 666
Q ss_pred hhhHHHHHHHHhhCCC
Q 043060 554 WDDVATIRTRLNDKGM 569 (707)
Q Consensus 554 ~~~a~~~~~~m~~~~~ 569 (707)
+++|.+.+++..+.|.
T Consensus 113 ~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 113 EKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCC
Confidence 6666666666666554
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.37 E-value=0.0004 Score=71.81 Aligned_cols=82 Identities=9% Similarity=0.040 Sum_probs=65.3
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc-----cCCCCc---hhHHHHHH
Q 043060 485 AGLFDEAEALLKTM---------EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLE-----LEPENP---GAYVLLSN 546 (707)
Q Consensus 485 ~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~~~~l~~ 546 (707)
.|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|++| .+++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45667777766653 23344 56888999999999999999999999986 356555 46889999
Q ss_pred HhhhcCChhhHHHHHHHHhh
Q 043060 547 MYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 547 ~~~~~g~~~~a~~~~~~m~~ 566 (707)
+|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999876
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.35 E-value=0.00062 Score=52.78 Aligned_cols=65 Identities=25% Similarity=0.361 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 504 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
...|..+...+...|++++|+..++++++.+|.++.++..++.+|...|++++|.+.+++..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 56788899999999999999999999999999999999999999999999999999999988754
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.33 E-value=0.0012 Score=56.34 Aligned_cols=113 Identities=9% Similarity=-0.108 Sum_probs=92.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH----cCCHH
Q 043060 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR----AGLFD 489 (707)
Q Consensus 414 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~ 489 (707)
.+++++|++.|++..+.| .|+.. +...|...+.+++|.++|+...+. .+...+..|..+|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 356889999999999877 33333 667777788899999999998764 467788888889988 89999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCC
Q 043060 490 EAEALLKTMEMKPDAAIWTSLLGACRV----HGRLELGESVAKHLLELEP 535 (707)
Q Consensus 490 ~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p 535 (707)
+|.+.|++.-..-++..+..|...|.. .++.++|...++++.+.+.
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999987333578888889999988 8999999999999998864
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.30 E-value=0.0039 Score=61.74 Aligned_cols=145 Identities=13% Similarity=0.049 Sum_probs=76.1
Q ss_pred CCCChHHHHHHHHHHH--HcCC---HHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 043060 397 GYKTLASWNAMISGLA--MHGK---ADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470 (707)
Q Consensus 397 ~~~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 470 (707)
...+...|...+.+.. ..++ ..+|+.+|++.++ ..|+.. .+..+..++.. . ...+. .
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~----------~----~~~~~-~ 252 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIV----------R----HSQHP-L 252 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH----------H----HHHSC-C
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH----------H----hccCC-C
Confidence 3446777877776643 3333 5789999999998 788754 44444444430 0 00010 0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhh
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 549 (707)
+..... ....|.+....+...| ++.+|..+...+...|++++|...++++++++| +...|..++.++.
T Consensus 253 ~~~~~~----------~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~ 321 (372)
T 3ly7_A 253 DEKQLA----------ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYE 321 (372)
T ss_dssp CHHHHH----------HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred chhhHH----------HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 100000 0112222222222222 355555555555555666666666666666664 3455556666666
Q ss_pred hcCChhhHHHHHHHHhhCCC
Q 043060 550 GAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 550 ~~g~~~~a~~~~~~m~~~~~ 569 (707)
-.|++++|.+.+++....+.
T Consensus 322 ~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 322 MKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HTTCHHHHHHHHHHHHHHSC
T ss_pred HCCCHHHHHHHHHHHHhcCC
Confidence 66666666666666655443
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.26 E-value=0.0015 Score=67.56 Aligned_cols=94 Identities=10% Similarity=-0.029 Sum_probs=63.9
Q ss_pred cCCHHHHHHHHHHhHHhcC--CCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHH
Q 043060 449 AGLLDIGRQYFNAMIQDYK--ISPK----LQHYGCMVDLLGRAGLFDEAEALLKTM---------EMKPD-AAIWTSLLG 512 (707)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~ 512 (707)
.|++++|..++++..+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 3455555555555443211 1111 245667777777777777777777664 34566 678999999
Q ss_pred HHHhcCChhHHHHHHHHHHc-----cCCCCchhHH
Q 043060 513 ACRVHGRLELGESVAKHLLE-----LEPENPGAYV 542 (707)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~ 542 (707)
.|..+|++++|+.+++++++ ++|++|.+-.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 99999999999999999987 4788775443
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.23 E-value=0.0022 Score=54.52 Aligned_cols=90 Identities=16% Similarity=0.102 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHccC-C-CCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCccCCccc
Q 043060 502 PDAAIWTSLLGACRVHG---RLELGESVAKHLLELE-P-ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCS 576 (707)
Q Consensus 502 p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 576 (707)
++..+.-.+..++.+.+ ++++|+.+++.+++.+ | ++...++.|+-+|.+.|++++|+++++.+.+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie-------- 101 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE-------- 101 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------
Confidence 56777778888888877 6678999999998888 6 457788889999999999999999999887633
Q ss_pred EEeECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCc
Q 043060 577 SIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFV 617 (707)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 617 (707)
|...++......+.+.+.+.|.+
T Consensus 102 ------------------P~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 102 ------------------PQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHHHTTCC
T ss_pred ------------------CCCHHHHHHHHHHHHHHHHhhHH
Confidence 33445555556667777777765
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.17 E-value=0.0027 Score=65.72 Aligned_cols=71 Identities=14% Similarity=0.036 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc-----cCCCC
Q 043060 473 QHYGCMVDLLGRAGLFDEAEALLKTM---------EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLE-----LEPEN 537 (707)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~ 537 (707)
.+++.|..+|...|++++|+.++++. +..|+ ..+++.|...|..+|++++|+.+++++++ ++|++
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H 409 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 409 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555666666666666666666553 34466 66889999999999999999999999986 47887
Q ss_pred chhHHH
Q 043060 538 PGAYVL 543 (707)
Q Consensus 538 ~~~~~~ 543 (707)
|.+-..
T Consensus 410 p~~~~~ 415 (429)
T 3qwp_A 410 SLIEDL 415 (429)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 765443
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.11 E-value=0.0016 Score=51.52 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=59.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-HH-HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCCh
Q 043060 478 MVDLLGRAGLFDEAEALLKTM-EMKPD-AA-IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 554 (707)
....+.+.|++++|++.+++. ...|+ .. .|..+...+...|++++|+..++++++++|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 455677888888888888875 44554 66 88888999999999999999999999999988877632 444
Q ss_pred hhHHHHHHHH
Q 043060 555 DDVATIRTRL 564 (707)
Q Consensus 555 ~~a~~~~~~m 564 (707)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 216
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.11 E-value=0.00019 Score=72.25 Aligned_cols=433 Identities=12% Similarity=0.076 Sum_probs=231.3
Q ss_pred chhhhhhhchhhcccCCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 043060 61 TQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSC 140 (707)
Q Consensus 61 ~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 140 (707)
.+.+|..|- .++.+.|++.+|+..|-+. .|...|..+|.+..+.|.+++-+..+...++. .-++..=+.|+-+|
T Consensus 53 ~p~VWs~Lg--kAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLA--KAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHH--HHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHH
T ss_pred CccHHHHHH--HHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHH
Confidence 445666666 6777777777776655443 35555677777777777777777766544433 22344445677777
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCC------------------------CCe
Q 043060 141 AKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL------------------------RDA 196 (707)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~------------------------~~~ 196 (707)
++.+++.+-.+.+. .|+..-...+.+-+...|.++.|.-+|..+.. .++
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 77776655443332 35555556666667777777777777765531 256
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHH
Q 043060 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALID 276 (707)
Q Consensus 197 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 276 (707)
.+|-.+-.+|...+.+.-|.-+--.+.. ... .+..++.-|-..|.+++-..+++...... ......++-|.-
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIv-had------eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaI 271 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVV-HAD------ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 271 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSS------CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcc-cHH------HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 6777777777777776655433222211 011 12233444566677776666666554221 235677888888
Q ss_pred HHHhcCCHHHHHHHHHhcC----CC-------ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHh
Q 043060 277 MYSKCGDLVKARDLFESIE----KR-------DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345 (707)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~~----~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 345 (707)
.|+|-. .++-.+-++..- -| ....|.-++-.|.+-.+++.|... |.+. .|+...-........
T Consensus 272 LYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h--~~~Aw~h~~Fkdii~ 345 (624)
T 3lvg_A 272 LYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIIT 345 (624)
T ss_dssp HHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSC--HHHHCCGGGGTTTGG
T ss_pred HHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhC--ChhhccHHHHHHHHH
Confidence 888874 333333333221 12 445688899999988888877543 3221 111111111111122
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhh-------------HHHhcCCHHHHHHHHhcCCCCChHHHH-HHHHHH
Q 043060 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID-------------MYAKCGNIKAAEQVFDGMGYKTLASWN-AMISGL 411 (707)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~-------------~y~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~ 411 (707)
+..+.+.--+....-++..+ ...+-|+. ++.+.|++.-....+......|...-| ++-..|
T Consensus 346 KVaN~EiyYKAi~FYL~e~P-----~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~ 420 (624)
T 3lvg_A 346 KVANVELYYRAIQFYLEFKP-----LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLF 420 (624)
T ss_dssp GCSCSHHHHHHHHHHTTSCC-----TTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHH
T ss_pred HcchHHHHHHHHHHHHHhCh-----HHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 23333322222222222221 12333333 444444444444444444455544433 344456
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHH
Q 043060 412 AMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491 (707)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 491 (707)
....|++.-. . -+..|-+-..+.-|.++ +++ +-.+.-..-...|.+.++++++
T Consensus 421 IEEEDy~~LR----~---------------SId~ydNFD~i~LA~rL-----EkH---eL~eFRrIAA~LYkkn~rw~qs 473 (624)
T 3lvg_A 421 ITEEDYQALR----T---------------SIDAYDNFDNISLAQRL-----EKH---ELIEFRRIAAYLFKGNNRWKQS 473 (624)
T ss_dssp HHTTCCHHHH----H---------------TTSSCCCSCTTHHHHHH-----HTC---SSHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhhhHHHHH----H---------------HHHHhccccHHHHHHHH-----hhC---chHHHHHHHHHHHHhcccHHHH
Confidence 6666654221 1 11122222222222221 111 1222223344568888999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHH
Q 043060 492 EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATI 560 (707)
Q Consensus 492 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 560 (707)
+++.++=+.-.| .+......|+.+.++++++-.++.+. ...+...+-.|...=+.|-+.++
T Consensus 474 i~l~KkDklykD------AietAa~S~~~elaeeLL~yFv~~g~--~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 474 VELCKKDSLYKD------AMQYASESKDTELAEELLQWFLQEEK--RECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp SSCSSTTCCTTG------GGTTTTTCCCTTHHHHHHHHHHHHCS--THHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHhcccHHH------HHHHHHHcCCHHHHHHHHHHHHHcCc--hHHHHHHHHHHhhccChHHHHHH
Confidence 887665333223 23345677888888888888777653 35777777777777777766654
No 217
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.10 E-value=0.0018 Score=51.53 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=37.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 043060 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
+...|..+...|...|++++|+..|++.++ ..|+. ..|..+..++...|++++|.+.|+...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445566666666666666666666666665 33432 3555566666666666666666665543
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.96 E-value=0.0014 Score=51.82 Aligned_cols=61 Identities=20% Similarity=0.300 Sum_probs=55.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHccCCCCch-hHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 509 SLLGACRVHGRLELGESVAKHLLELEPENPG-AYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 509 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.....+...|++++|...++++++.+|+++. .+..++.+|...|++++|.+.+++..+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3456778899999999999999999999999 999999999999999999999999987654
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.87 E-value=0.039 Score=44.91 Aligned_cols=140 Identities=11% Similarity=0.085 Sum_probs=98.4
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHH
Q 043060 412 AMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491 (707)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 491 (707)
.-.|..++..++..+... ..+..-|+.++.-....-+-+-..+.++.+-+-+.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 345777777777777665 223445666665555555666666666665443222 234555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCc
Q 043060 492 EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570 (707)
Q Consensus 492 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 570 (707)
..-+-.++ .+......-++....+|+-+.-.+++..++.-++.+|.....++++|.+.|+..+|.+++.+.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55555543 245556677888899999999999999987777778999999999999999999999999999999984
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.71 E-value=0.12 Score=58.63 Aligned_cols=154 Identities=13% Similarity=0.180 Sum_probs=95.1
Q ss_pred HHHHhCCChhHHHH-HHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC
Q 043060 204 TGYASRGYLDDARQ-LFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282 (707)
Q Consensus 204 ~~~~~~g~~~~A~~-l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 282 (707)
......+++++|.+ ++..+ |+...+..++..+.+.|..+.|.++.+. +. .-.......|
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i--------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~ 666 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV--------EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVG 666 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC--------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHT
T ss_pred hHHHHhCCHHHHHHHHHhcC--------CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcC
Confidence 34445777777776 54333 1122235666666677777776655421 11 1134557789
Q ss_pred CHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHH
Q 043060 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362 (707)
Q Consensus 283 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 362 (707)
++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+....+-+....
T Consensus 667 ~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 667 QLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp CHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999887663 567899999999999999999999998754 23344444446666655555444444
Q ss_pred hCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhc
Q 043060 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395 (707)
Q Consensus 363 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 395 (707)
.|. ++.-..+|.+.|++++|.+++.+
T Consensus 736 ~~~-------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 736 TGK-------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp TTC-------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCc-------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 332 23344456667777777666543
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.61 E-value=0.0075 Score=57.15 Aligned_cols=87 Identities=16% Similarity=0.235 Sum_probs=73.4
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHHccCCCC-chhHHHHHHHhhhc-CChhh
Q 043060 488 FDEAEALLKTM-EMKPD---AAIWTSLLGACRV-----HGRLELGESVAKHLLELEPEN-PGAYVLLSNMYAGA-GRWDD 556 (707)
Q Consensus 488 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 556 (707)
..+|...+++. .+.|+ ...|..|+..|.. -|+.++|++.|+++++++|+. ..+++.+++.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45566666664 56776 6689999999988 499999999999999999974 99999999999985 99999
Q ss_pred HHHHHHHHhhCCCccCCc
Q 043060 557 VATIRTRLNDKGMKKVPG 574 (707)
Q Consensus 557 a~~~~~~m~~~~~~~~~~ 574 (707)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999988765565
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.57 E-value=0.02 Score=56.74 Aligned_cols=39 Identities=13% Similarity=-0.101 Sum_probs=34.7
Q ss_pred HHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 530 LLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 530 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
.+..+|.++.+|..++..+...|++++|...++++.+.+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 345679999999999999988999999999999999876
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.34 E-value=0.016 Score=45.05 Aligned_cols=69 Identities=16% Similarity=0.096 Sum_probs=56.4
Q ss_pred CCChHHHHHHHHHHHHcCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 043060 469 SPKLQHYGCMVDLLGRAGL---FDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537 (707)
Q Consensus 469 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 537 (707)
+.+...+..+..++...++ .++|..++++. ...|+ +..+..+...+...|++++|+..|+++++.+|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3567777888888765555 68999998886 56676 7788888889999999999999999999999874
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.30 E-value=0.087 Score=59.76 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=26.2
Q ss_pred HhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043060 381 AKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMI 428 (707)
Q Consensus 381 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 428 (707)
..+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.
T Consensus 663 l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 44556666665555442 34556666666666666666666666553
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.22 E-value=0.032 Score=44.49 Aligned_cols=73 Identities=21% Similarity=0.158 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-----C---C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHH
Q 043060 472 LQHYGCMVDLLGRAGLFDEAEALLKTM-----E---M-KPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV 542 (707)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~~~~~~-----~---~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 542 (707)
..-+-.|...+.+.|+++.|...++.. + . .+...++..|..++.+.|+++.|...++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 334445666666666666666666653 1 1 123678899999999999999999999999999999877655
Q ss_pred HH
Q 043060 543 LL 544 (707)
Q Consensus 543 ~l 544 (707)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.15 Score=44.39 Aligned_cols=129 Identities=15% Similarity=0.143 Sum_probs=77.7
Q ss_pred hHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHH
Q 043060 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457 (707)
Q Consensus 378 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 457 (707)
+....+|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+... |..+.-.|.-.|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445678888888777665 4566788888888888888888888876653 3444445555666665554
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043060 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHL 530 (707)
Q Consensus 458 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 530 (707)
+-+....+ | -++.-...+.-.|+++++.+++.+.+.-|.... ....+|-.+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 44433221 1 123334445567888888888777654332221 123355566666665544
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.86 E-value=0.033 Score=47.32 Aligned_cols=88 Identities=17% Similarity=-0.033 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChhHHH
Q 043060 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAG---LFDEAEALLKTM-EMK-P--DAAIWTSLLGACRVHGRLELGE 524 (707)
Q Consensus 452 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~A~ 524 (707)
+..+++.|.+..+ .-.++..+.-.+..++.+.+ +.++++.++++. ... | +...+-.|.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~--~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 3444455554443 22255566556666666666 455677666664 222 4 2556667788899999999999
Q ss_pred HHHHHHHccCCCCchhH
Q 043060 525 SVAKHLLELEPENPGAY 541 (707)
Q Consensus 525 ~~~~~~~~~~p~~~~~~ 541 (707)
+.++.+++.+|+|..+.
T Consensus 92 ~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHhcCCCCHHHH
Confidence 99999999999886543
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.83 E-value=0.043 Score=44.79 Aligned_cols=65 Identities=9% Similarity=-0.084 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHhcCChhH---HHHHHHHHHccC-C-CCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 502 PDAAIWTSLLGACRVHGRLEL---GESVAKHLLELE-P-ENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 502 p~~~~~~~ll~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
|+..+--.+..++.+..+... ++.+++.++..+ | ......+.|+-++.+.|++++|.++.+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444445555555443333 555555555554 3 2344555666666666666666666666554
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.88 Score=39.59 Aligned_cols=128 Identities=15% Similarity=0.166 Sum_probs=72.1
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHH
Q 043060 277 MYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356 (707)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 356 (707)
....+|+++.|.++.+.+ .+...|..+.....+.|+++-|.+.|.+..+ |..+.-.|...|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345667777777776665 3566777777777777887777777777643 23333344445555555444
Q ss_pred HHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043060 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427 (707)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 427 (707)
-+.....|. ++.-...+.-.|+++++.++|.+...-.. -+......|..+.|.++.+++
T Consensus 83 a~iA~~~g~-------~n~af~~~l~lGdv~~~i~lL~~~~r~~e-----A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTRED-------FGSMLLNTFYNNSTKERSSIFAEGGSLPL-----AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHTTC-------HHHHHHHHHHHTCHHHHHHHHHHTTCHHH-----HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHCcc-------HHHHHHHHHHcCCHHHHHHHHHHCCChHH-----HHHHHHHcCcHHHHHHHHHHh
Confidence 444444332 33444445566777777777665433111 111122345566666665544
No 230
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.47 E-value=3.4 Score=44.35 Aligned_cols=254 Identities=9% Similarity=-0.025 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhcc
Q 043060 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347 (707)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 347 (707)
...-+.-+..+.+.+++.....++.. ...+...-.....+....|+..+|....+.+-..| .........++..+...
T Consensus 72 ~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 72 RTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHC
Confidence 34445556667777777777776665 33344444455666677777777777666665444 22333444555555544
Q ss_pred CCchHHH--HHHHHHHHhCCC-----------CCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChH---HHHHHHHHH
Q 043060 348 GALDLGK--WIHAYIDKNHQK-----------LNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA---SWNAMISGL 411 (707)
Q Consensus 348 ~~~~~a~--~~~~~~~~~~~~-----------~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~ 411 (707)
|.+.... +=...+...+.. +........++..+.+-. .+....... .++.. .+..-+.-+
T Consensus 150 g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~---~~~~~~~~~-~~~~~~~~~~~~~~~rl 225 (618)
T 1qsa_A 150 GKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPN---TVLTFARTT-GATDFTRQMAAVAFASV 225 (618)
T ss_dssp TCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGG---GHHHHHHHS-CCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChH---hHHHHHhcc-CCChhhHHHHHHHHHHH
Confidence 4432211 111111111100 001111122222222111 111111111 11111 111112223
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHhHH----HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC
Q 043060 412 AMHGKADKALSLFSRMIGEGLQPDDITF----VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487 (707)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 487 (707)
++ .+.+.|..+|......+ ..+.... ..+.......+...++...+...... .++.....-.+....+.|+
T Consensus 226 ar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d 300 (618)
T 1qsa_A 226 AR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGD 300 (618)
T ss_dssp HH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTC
T ss_pred Hh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCC
Confidence 33 37788888888876532 2232222 22222333445355566666654332 2333333334444557789
Q ss_pred HHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 043060 488 FDEAEALLKTMEMKP-D-AAIWTSLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 488 ~~~A~~~~~~~~~~p-~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
++.|...|+.|+..+ + ....-=+..+....|+.++|...|+++.+
T Consensus 301 ~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 301 RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999999886443 2 22122244466778888889888888875
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.32 E-value=0.43 Score=39.60 Aligned_cols=91 Identities=8% Similarity=0.029 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHccCCC-CchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCccCCccc
Q 043060 501 KPDAAIWTSLLGACRVHG---RLELGESVAKHLLELEPE-NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCS 576 (707)
Q Consensus 501 ~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 576 (707)
.|+..+--.+..++.+.. +..+++.+++.++..+|. .....+.|+-++.+.|++++|.++.+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e-------- 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE-------- 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC--------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--------
Confidence 355555556666666654 345677788887777763 44566778888888888888888888777632
Q ss_pred EEeECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCc
Q 043060 577 SIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFV 617 (707)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 617 (707)
|...++...-..+.++|.+.|.+
T Consensus 108 ------------------P~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 108 ------------------RNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp ------------------CCCHHHHHHHHHHHHHHHHTTTT
T ss_pred ------------------CCcHHHHHHHHHHHHHHHHhchh
Confidence 33344444445566677777754
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.78 E-value=0.097 Score=41.57 Aligned_cols=67 Identities=13% Similarity=-0.014 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccC-------CCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELE-------PENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 503 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+..-...|+..+...|+++.|...++++++.. +..+.++..|+.+|.+.|++++|..++++..+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 34556678899999999999999999999752 34567899999999999999999999999987443
No 233
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.94 E-value=0.0054 Score=61.92 Aligned_cols=238 Identities=12% Similarity=0.128 Sum_probs=151.6
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHH
Q 043060 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC 243 (707)
Q Consensus 164 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~ 243 (707)
.+.+|+.|..++.+.+++.+|..-|= +..|...|..+|....+.|.+++-+..+.... +..- +...=+.|+-+|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaR--k~~k--e~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMAR--KKAR--ESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTS--TTCC--STTTTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHhc--ccccHHHHHHHH
Confidence 34567777777777777777665553 33466677777777777777777777776652 2222 233334677777
Q ss_pred hccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC------------------------CCh
Q 043060 244 AHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK------------------------RDV 299 (707)
Q Consensus 244 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~ 299 (707)
++.+++.+-++++. .||..-.....+-+...|.++.|.-+|..+.. .++
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 77777655433321 34555555666667777777777777766542 266
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhH
Q 043060 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379 (707)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 379 (707)
.+|-.+-.+|...+.+.-|.-.--.+. +.|| .+..++..|-..|.+++-..+++.-. |.+......++-|.-.
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaIL 272 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAIL 272 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHH
Confidence 788888888888888776644433333 1222 22344556777788888777777655 4444478889999999
Q ss_pred HHhcCCHHHHHHHHhc----CCCC-------ChHHHHHHHHHHHHcCCHHHHHH
Q 043060 380 YAKCGNIKAAEQVFDG----MGYK-------TLASWNAMISGLAMHGKADKALS 422 (707)
Q Consensus 380 y~~~g~~~~A~~~~~~----~~~~-------~~~~~~~li~~~~~~g~~~~A~~ 422 (707)
|+|- ++++-.+-++. +.-| ....|..++-.|.+..+++.|..
T Consensus 273 YsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 9876 34444444443 2222 33469999999999888887754
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.61 E-value=0.57 Score=38.16 Aligned_cols=90 Identities=17% Similarity=-0.033 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChhHH
Q 043060 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE---AEALLKTM-EMK-P--DAAIWTSLLGACRVHGRLELG 523 (707)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~A 523 (707)
.+..+.+-|...... +. ++..+--.+..++.+.....+ ++.+++.. ... | .....-.|.-++.+.|+++.|
T Consensus 16 ~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 334444455544332 22 555555556666777666555 67777765 222 4 234455677789999999999
Q ss_pred HHHHHHHHccCCCCchhHH
Q 043060 524 ESVAKHLLELEPENPGAYV 542 (707)
Q Consensus 524 ~~~~~~~~~~~p~~~~~~~ 542 (707)
.+.++.+++.+|+|..+..
T Consensus 94 ~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHH
Confidence 9999999999999875443
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.57 E-value=0.47 Score=44.97 Aligned_cols=111 Identities=13% Similarity=0.070 Sum_probs=60.2
Q ss_pred hcCCHHHHHHHHhcCCCCChH--HHHHHHHH-HHHc--CC------HHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHh
Q 043060 382 KCGNIKAAEQVFDGMGYKTLA--SWNAMISG-LAMH--GK------ADKALSLFSRMIGEGLQPD---DITFVGVLSACN 447 (707)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~~~~--~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~ 447 (707)
+.|+..+-.+.+.+....++. .|..++.+ +... |+ ...|...+++.++ +.|+ ...|..+...|.
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHH
Confidence 344555555566666544443 56666553 3332 22 4566666666666 5666 335555555555
Q ss_pred cc-----CCHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHHHc-CCHHHHHHHHHh
Q 043060 448 HA-----GLLDIGRQYFNAMIQDYKISP--KLQHYGCMVDLLGRA-GLFDEAEALLKT 497 (707)
Q Consensus 448 ~~-----g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~-g~~~~A~~~~~~ 497 (707)
.. |+.++|.+.|++..+- .| +..++....+.|++. |+.++|.+.+++
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~k 265 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLNNRAGFDEALDR 265 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred hCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 53 6666666666666542 23 244555555555553 555555555555
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.21 E-value=0.3 Score=40.88 Aligned_cols=53 Identities=4% Similarity=-0.056 Sum_probs=39.6
Q ss_pred cCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 517 HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.+|+++|.++|+.++.+...-+..|...+..-.+.|+...|++++.+....+.
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 36788888888888776555566777777777888888888888888777554
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.97 E-value=0.79 Score=50.27 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=50.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 511 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
...|...|+++.|+++++++...-|.+..+|..|+.+|...|+|+.|+-.+..+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4567788999999999999999999999999999999999999999999888874
No 238
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.88 E-value=0.51 Score=38.60 Aligned_cols=65 Identities=8% Similarity=-0.031 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHccCCC-CchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 502 PDAAIWTSLLGACRVHG---RLELGESVAKHLLELEPE-NPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 502 p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
|+..+--.+..++.+.. +..+|+.+++.+++.+|. ....+..|+-++.+.|++++|.++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444444444444443 334566666666665552 345566666666666666666666666654
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.49 E-value=0.96 Score=37.86 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=67.8
Q ss_pred CCCChHHHHHHHHHHHHcCCH------HHHHHHHHHHHHCCCCCCHh----HHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 043060 397 GYKTLASWNAMISGLAMHGKA------DKALSLFSRMIGEGLQPDDI----TFVGVLSACNHAGLLDIGRQYFNAMIQDY 466 (707)
Q Consensus 397 ~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 466 (707)
...|..+|-..+...-+.|+. ++.+++|++.... ++|+.. .|..+.--|
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrY-------------------- 67 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRF-------------------- 67 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHH--------------------
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHH--------------------
Confidence 345677777777777777777 6666777766653 555421 111111100
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhH
Q 043060 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541 (707)
Q Consensus 467 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 541 (707)
. .+...++.++|.++|+.+ ..... ..+|.....--.++|+++.|.+++.+++.+.|......
T Consensus 68 ---------A----~~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 68 ---------A----ELKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp ---------H----HHHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred ---------H----HHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 0 112235666666666665 11111 77888888888889999999999999999888764433
No 240
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.94 E-value=19 Score=40.40 Aligned_cols=255 Identities=10% Similarity=0.007 Sum_probs=113.9
Q ss_pred HhccCCchHHHHHHHHHHHcC--CCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC----------hhhHHHHHHHH
Q 043060 243 CAHMGSLELGNWVCSLIEGHG--LGSNLHVTNALIDMYSKCGDLVKARDLFESIEK-RD----------VISWNVMIGGY 309 (707)
Q Consensus 243 ~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~----------~~~~~~li~~~ 309 (707)
....|+.+++..++...+..+ -.+.+.....+.-+...+|..+++..++..... .+ +..-.++.-|+
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 445666666666655544311 122233444444445555555555555444321 11 11122233333
Q ss_pred HhcCC-HHHHHHHHHHHhhcCCCCChhh--HH--hHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHH--Hh
Q 043060 310 THTSD-YKEALMLFRQMLQSNIEPNDVT--FL--SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMY--AK 382 (707)
Q Consensus 310 ~~~g~-~~~A~~~~~~m~~~g~~p~~~t--~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y--~~ 382 (707)
+-.|. -+++.+.+..+.... +... .. ++.-.+...|+.+....++..+.... +..+...++.+. ..
T Consensus 464 a~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~----~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ----HGNITRGLAVGLALIN 536 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS----CHHHHHHHHHHHHHHT
T ss_pred HhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC----cHHHHHHHHHHHHhhh
Confidence 33332 245556665555421 1111 11 11122345566666666666665432 222233333333 34
Q ss_pred cCCHHHHHHHHhcCC-CCChH-HHH---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHH
Q 043060 383 CGNIKAAEQVFDGMG-YKTLA-SWN---AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457 (707)
Q Consensus 383 ~g~~~~A~~~~~~~~-~~~~~-~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 457 (707)
.|+.+.+..+++.+. ..+.. -|. ++..+|+..|+.....++++.+... ...+......+.-+....|+.+.+.+
T Consensus 537 ~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 537 YGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 566666665555543 12322 232 2334566677765555577777653 11111122222223334455555555
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHHcCCH-HHHHHHHHhCCCCCCHHHH
Q 043060 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLF-DEAEALLKTMEMKPDAAIW 507 (707)
Q Consensus 458 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~p~~~~~ 507 (707)
+++.+.+ ...|.+..-.++.-+....|.. .+|.+++..+...+|..+-
T Consensus 616 lv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vr 664 (963)
T 4ady_A 616 IVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVR 664 (963)
T ss_dssp HTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHH
Confidence 5554443 2234443333444344444443 5666777776445554433
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.90 E-value=29 Score=38.96 Aligned_cols=251 Identities=10% Similarity=0.009 Sum_probs=133.1
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC----Ch--hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--CC---Ch-hh-HHhHHH
Q 043060 276 DMYSKCGDLVKARDLFESIEKR----DV--ISWNVMIGGYTHTSDYKEALMLFRQMLQSNI--EP---ND-VT-FLSVLP 342 (707)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~-~t-~~~ll~ 342 (707)
-+....|+.++++.+++..... +. ..-..+.-|....|..++++.++.......- .- +. .. -..+--
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3456678888899998887642 22 2333445566777777788888877665321 00 01 11 111112
Q ss_pred HHhccCC-chHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC-CCChH--HHHHHHHHHHHcCCHH
Q 043060 343 ACAYLGA-LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG-YKTLA--SWNAMISGLAMHGKAD 418 (707)
Q Consensus 343 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~--~~~~li~~~~~~g~~~ 418 (707)
+.+..|. -+.+...+..++............-+|...|.-.|+-+....++..+. ..+.. -.-.+.-++...|+.+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 2223332 234444444444432110011223344555666788777777766542 12222 2333444455789998
Q ss_pred HHHHHHHHHHHCCCCCCHh-HHH---HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 043060 419 KALSLFSRMIGEGLQPDDI-TFV---GVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494 (707)
Q Consensus 419 ~A~~~~~~m~~~g~~p~~~-t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 494 (707)
.+..+.+.+... .|.. -|. .+.-+|+..|+.....+++..+..+ ...++.....+.-++.-.|+.+.+.++
T Consensus 542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 888888888873 2332 333 3455788999998888899988763 223333333333344446777667777
Q ss_pred HHhCCCCCCHHHHH--HHHHHHHhcCCh-hHHHHHHHHHH
Q 043060 495 LKTMEMKPDAAIWT--SLLGACRVHGRL-ELGESVAKHLL 531 (707)
Q Consensus 495 ~~~~~~~p~~~~~~--~ll~~~~~~g~~-~~A~~~~~~~~ 531 (707)
++.+....|..+-. .+.-+....|+. ..+...+..+.
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 76552223433333 233333334433 45666666664
No 242
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=88.81 E-value=12 Score=40.40 Aligned_cols=82 Identities=10% Similarity=0.047 Sum_probs=42.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHh-
Q 043060 304 VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK- 382 (707)
Q Consensus 304 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~- 382 (707)
.....+.-.|+++.|++.+... ...|.+.+...+..+.-.+ ....++.. .... ...-+..||..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~---~~~~lls~----~~~~-~~lN~arLI~~Yt~~ 366 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFK---IDSSTRLT----KKPK-RDIRFANILANYTKS 366 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC-------------------------CHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCcc---CCCccccc----CCCc-ccccHHHHHHHHHHH
Confidence 3556667789999999987754 2456666665555443332 21111111 1011 11225567777764
Q ss_pred --cCCHHHHHHHHhcCC
Q 043060 383 --CGNIKAAEQVFDGMG 397 (707)
Q Consensus 383 --~g~~~~A~~~~~~~~ 397 (707)
..+..+|.+.|--+.
T Consensus 367 F~~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 367 FRYSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTTTCHHHHHHHHHGGG
T ss_pred hhcCCHHHHHHHHHHHh
Confidence 577788887776553
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.58 E-value=19 Score=34.98 Aligned_cols=168 Identities=14% Similarity=0.118 Sum_probs=101.8
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHH----HHHHHCCCCCCHhHHHHHHHHHh
Q 043060 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF----SRMIGEGLQPDDITFVGVLSACN 447 (707)
Q Consensus 372 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~ 447 (707)
.|.++..=|.+.+++++|.+++.. -...+.++|+..-|-++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456667778889999999987643 233455667765554443 45555678888877777777665
Q ss_pred ccCCHH-HHHHHHHHhH---HhcC--CCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 043060 448 HAGLLD-IGRQYFNAMI---QDYK--ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521 (707)
Q Consensus 448 ~~g~~~-~a~~~~~~~~---~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 521 (707)
....-+ +=..+.+.++ .++| ..-|......+...|.+.|++.+|..-|= .+.++.+..+..++.-+...+.
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~-- 182 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE-- 182 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC--
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC--
Confidence 544211 0111222221 1123 23466777788899999999999988773 3434344666666554444332
Q ss_pred HHHHHHHHHHccCCCCchhHHHHH-HHhhhcCChhhHHHHHHHHhh
Q 043060 522 LGESVAKHLLELEPENPGAYVLLS-NMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 522 ~A~~~~~~~~~~~p~~~~~~~~l~-~~~~~~g~~~~a~~~~~~m~~ 566 (707)
|.....|..-+ --|...|+...|..+++...+
T Consensus 183 -------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22333444333 336778899999888777654
No 244
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=88.40 E-value=9.3 Score=31.31 Aligned_cols=136 Identities=14% Similarity=0.060 Sum_probs=97.4
Q ss_pred HhcCCHHHHHHHHhcCCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHH
Q 043060 381 AKCGNIKAAEQVFDGMGY-KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF 459 (707)
Q Consensus 381 ~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 459 (707)
.-.|.+++..++..+... .+..-||-+|.-....-+-+-..+.++..-. --|. ...|++.....-+
T Consensus 18 ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi~C~ 84 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVVECG 84 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHHHHH
Confidence 346778888888887643 4566677777777777777766666665543 1121 2334555544444
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHh-C-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 043060 460 NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT-M-EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEP 535 (707)
Q Consensus 460 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 535 (707)
-.+ ..+......-++.+..+|+-++-.+++.. . ..+|++...-.+..+|.+.|+..+|.+++.++-+.+-
T Consensus 85 ~~~------n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 85 VIN------NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHT------TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHh------cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 433 13556667778889999999999999999 4 4567899999999999999999999999999988764
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.81 E-value=3.3 Score=35.42 Aligned_cols=26 Identities=8% Similarity=-0.046 Sum_probs=13.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhH
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMI 463 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~ 463 (707)
++..+.+++...+++.+|...|+...
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34444555555555555555555543
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.56 E-value=2.2 Score=36.50 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=22.9
Q ss_pred hhHHHHHHHhhhcCChhhHHHHHHHH
Q 043060 539 GAYVLLSNMYAGAGRWDDVATIRTRL 564 (707)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~a~~~~~~m 564 (707)
+.-+.++.+|.+.|++++|+.+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 56678999999999999999998775
No 247
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.27 E-value=8.3 Score=29.47 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=61.4
Q ss_pred CchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043060 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327 (707)
Q Consensus 248 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (707)
.-++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||.+.|-++-.. +.|..+++...+..+..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 35667677776666653 333333334457889999999999999999999999887654 67888888888888877
Q ss_pred cCCCCChhhHH
Q 043060 328 SNIEPNDVTFL 338 (707)
Q Consensus 328 ~g~~p~~~t~~ 338 (707)
.| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 76 45444443
No 248
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.89 E-value=23 Score=34.09 Aligned_cols=170 Identities=10% Similarity=0.074 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHH----HHHHhhcCCCCChhhHHhHHHHHh
Q 043060 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALML----FRQMLQSNIEPNDVTFLSVLPACA 345 (707)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 345 (707)
.+.++..=|.+.+++++|.+++.. -...+.+.|+...|.++ .+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344555668888899998888643 23345566776665554 344445577888777777776665
Q ss_pred ccCCc-----hHHHHHHHHHHHhCC-CCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHc---CC
Q 043060 346 YLGAL-----DLGKWIHAYIDKNHQ-KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMH---GK 416 (707)
Q Consensus 346 ~~~~~-----~~a~~~~~~~~~~~~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 416 (707)
....- .-.......-.+.|. ...++.....+...|.+.|++.+|+.-|-.-...+...+..|+.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 53321 122222333333332 2337888899999999999999999887633322455555555444443 43
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 043060 417 ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465 (707)
Q Consensus 417 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 465 (707)
..++--..- .++ --|.-.|++..|..+|+...+.
T Consensus 184 ~~e~dlf~~--------------RaV-L~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTVAEFFS--------------RLV-FNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHH--------------HHH-HHHHHTTBHHHHHHHHHHHHHH
T ss_pred cchHHHHHH--------------HHH-HHHHHhcCHHHHHHHHHHHHHH
Confidence 333211111 112 2344567888888888876553
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.81 E-value=1.6 Score=44.18 Aligned_cols=67 Identities=19% Similarity=0.111 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh-----CCCccCC
Q 043060 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND-----KGMKKVP 573 (707)
Q Consensus 507 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~ 573 (707)
...++.++...|+.+++...++.++..+|-+...|..|+.+|.+.|+..+|.+.|++..+ .|+.+.|
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 345667777888888888888888888888888888888888889999988888877653 4664433
No 250
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.31 E-value=7.9 Score=29.55 Aligned_cols=86 Identities=13% Similarity=0.036 Sum_probs=61.4
Q ss_pred CchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043060 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327 (707)
Q Consensus 248 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (707)
.-++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||.+.|-++-.. +.|..+++...+..+..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 35666666666666653 333333334457889999999999999999999999887654 78888888888888877
Q ss_pred cCCCCChhhHH
Q 043060 328 SNIEPNDVTFL 338 (707)
Q Consensus 328 ~g~~p~~~t~~ 338 (707)
.| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 76 45444443
No 251
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.24 E-value=3.3 Score=45.40 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=39.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHh
Q 043060 411 LAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAM 462 (707)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~ 462 (707)
+...|+++.|+++-++... ..|+.+ +|..|..+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4567888888888888877 677765 7888888888888888888887776
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.99 E-value=32 Score=33.31 Aligned_cols=168 Identities=13% Similarity=0.026 Sum_probs=96.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHH----HHHhhcCCCCChhhHHhHHHHHhc
Q 043060 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF----RQMLQSNIEPNDVTFLSVLPACAY 346 (707)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~ 346 (707)
+.++..=|.+.+++++|.+++.. -...+.+.|+...|.++- +-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44455668888999999887643 233455566665554443 344456777887777777776665
Q ss_pred cCCchH-----HHHHHHHHHHhC-CCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHH
Q 043060 347 LGALDL-----GKWIHAYIDKNH-QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420 (707)
Q Consensus 347 ~~~~~~-----a~~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 420 (707)
...-+. .......-.+.| ...-++.....+...|.+.+++.+|+.-|-.-....+..+..|+.-+...+...+
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e- 185 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT- 185 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG-
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc-
Confidence 543221 112222333333 2233788888999999999999999988853222223555555444433332111
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 043060 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 421 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
+|.+.-.++ --|.-.+++..|..+|+...+
T Consensus 186 -------------~dlfiaRaV-L~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 -------------APLYCARAV-LPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------HHHHHHHHH-HHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHH-HHHHHhCCHHHHHHHHHHHHH
Confidence 111222222 235556788888887766654
No 253
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.48 E-value=39 Score=33.79 Aligned_cols=160 Identities=9% Similarity=-0.028 Sum_probs=90.2
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCCCC--------ChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHhHH---
Q 043060 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYK--------TLASWNAMISGLAMH-GKADKALSLFSRMIGEGLQPDDITF--- 439 (707)
Q Consensus 372 ~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~--- 439 (707)
....|...|.+.|+.++..+++.....- ....-..++..+... +..+.-.++..+..+.. +-+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3556777777778777777777665321 223455666666553 33344444444444311 1112233
Q ss_pred ---HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCCHHHH
Q 043060 440 ---VGVLSACNHAGLLDIGRQYFNAMIQDYKISPK----LQHYGCMVDLLGRAGLFDEAEALLKTM-----EMKPDAAIW 507 (707)
Q Consensus 440 ---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~ 507 (707)
..++..|...|++.+|..++..+.+...-..| .+.|..-+.+|...|++.++...+.+. .+.|++.+-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 14666777788888887777777664322112 234555666777788887777777654 122333222
Q ss_pred ----HHHHHHHH-hcCChhHHHHHHHHHHc
Q 043060 508 ----TSLLGACR-VHGRLELGESVAKHLLE 532 (707)
Q Consensus 508 ----~~ll~~~~-~~g~~~~A~~~~~~~~~ 532 (707)
..-+-.+. ..+++..|...|-+.++
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 22223345 67788888777766654
No 254
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.26 E-value=34 Score=35.03 Aligned_cols=185 Identities=12% Similarity=0.101 Sum_probs=117.2
Q ss_pred cCCHHHHHHHHHHHhhc-----CCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHH----Hh
Q 043060 312 TSDYKEALMLFRQMLQS-----NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMY----AK 382 (707)
Q Consensus 312 ~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y----~~ 382 (707)
.|++++|++.+..+.+. ...........++..|...++++...+....+.+..... ......+++.+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhc
Confidence 37789998887666542 234445567788889999999998888777766544332 23333444332 22
Q ss_pred cCC--HHHHHHHHhcCCC---C----C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCH---hHHHHHHHH
Q 043060 383 CGN--IKAAEQVFDGMGY---K----T---LASWNAMISGLAMHGKADKALSLFSRMIGE--GLQPDD---ITFVGVLSA 445 (707)
Q Consensus 383 ~g~--~~~A~~~~~~~~~---~----~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~t~~~ll~a 445 (707)
... .+.-..+.+.... . . ......|...|...|++.+|..++.++... |..+.. ..+...+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 332 2223334433321 1 1 113456778888999999999999998753 222221 245666778
Q ss_pred HhccCCHHHHHHHHHHhHHhc-CCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043060 446 CNHAGLLDIGRQYFNAMIQDY-KISPK----LQHYGCMVDLLGRAGLFDEAEALLKTM 498 (707)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~-~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 498 (707)
|...+++..|..++.++.... ...+. ...|.+++..+...+++.+|...|.++
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 889999999999998874321 12222 245677888888889998888876664
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.14 E-value=34 Score=32.88 Aligned_cols=131 Identities=10% Similarity=0.048 Sum_probs=74.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHH----HHhCccccCCCCCCHhhHHHHHHHH
Q 043060 168 HTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQL----FDEMPIREENFVPNESTVVTVLSAC 243 (707)
Q Consensus 168 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~~~~~~p~~~t~~~ll~~~ 243 (707)
|.++..-|.+.+++++|.+++..- ...+.+.|+...|-++ .+-. .+.+++++......++..+
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~--~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVY--DLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHH--HHcCCCCCHHHHHHHHHHH
Confidence 445566677778888887776432 2334555665554443 2222 2256666766666666655
Q ss_pred hccCCch-HHHHHHHHH----HHcC--CCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHh
Q 043060 244 AHMGSLE-LGNWVCSLI----EGHG--LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311 (707)
Q Consensus 244 ~~~g~~~-~a~~~~~~~----~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 311 (707)
.....-+ .-.++...+ .+.| -..++.....+...|.+.|++.+|+.-|-.-...|...+..++.-+..
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 4432111 112333333 3333 234778888999999999999999988763332245555544444333
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.13 E-value=8.8 Score=31.35 Aligned_cols=71 Identities=14% Similarity=0.057 Sum_probs=47.3
Q ss_pred CChHHHHHHHHHHHHcCCH---HHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchh
Q 043060 470 PKLQHYGCMVDLLGRAGLF---DEAEALLKTM-EMKPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540 (707)
Q Consensus 470 p~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 540 (707)
|+..+--.+..++.+.... .+++.++++. ...|. ...+--|.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4444444445555555543 3456666554 22342 4556677778999999999999999999999988643
No 257
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.41 E-value=16 Score=30.20 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=48.5
Q ss_pred CCChHHHHHHHHHHHHcCCHH---HHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchh
Q 043060 469 SPKLQHYGCMVDLLGRAGLFD---EAEALLKTM-EMKPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540 (707)
Q Consensus 469 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 540 (707)
.|+..+--.+..++.+..+.+ +++.+++.. ...|+ ....-.|.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 355555445555666655433 455566554 22342 3445566778999999999999999999999988643
No 258
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=79.70 E-value=8 Score=29.72 Aligned_cols=63 Identities=13% Similarity=0.170 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 043060 416 KADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480 (707)
Q Consensus 416 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 480 (707)
+.-+..+-++.+....+-|+.....+.+.||-+.+++..|.++|+.++.+.+. ...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence 34466666777777778899999999999999999999999999988775433 3445665553
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.40 E-value=16 Score=34.03 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=29.4
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043060 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498 (707)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 498 (707)
..+.|+++++++....-++ .-+-|...-..|+..|+-.|+++.|.+-++..
T Consensus 7 ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3455566666665555554 33345555566666666666666666655554
No 260
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=76.83 E-value=17 Score=36.56 Aligned_cols=68 Identities=12% Similarity=0.115 Sum_probs=42.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCCCChHH
Q 043060 405 NAMISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFNAMIQ----DYKISPKLQH 474 (707)
Q Consensus 405 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 474 (707)
..++..+...|++++|+..++.+.. ..| +...+..++.++.+.|+..+|.+.|+...+ +.|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3445566667777777777777665 333 455677777777777777777777766533 2355555443
No 261
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.72 E-value=18 Score=42.33 Aligned_cols=163 Identities=9% Similarity=-0.001 Sum_probs=84.6
Q ss_pred HHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCC
Q 043060 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS 248 (707)
Q Consensus 169 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~ 248 (707)
..++..+.+.+..+.|..+..-.+. +...--.+...|...|++++|.++|.+.- .++..+......+
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa---~~~~~~~~l~~~~--------- 882 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS---LVLYSHTSQFAVL--------- 882 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC---CSCTTCCCSCSSH---------
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh---hhhcccchhhhhh---------
Confidence 3455666677777777776655443 44444556678888999999999998873 3332221100000
Q ss_pred chHHHHHHHHHHHc-C-CCchhHHHHHHHHHHHhcCCHHHHHHHHHh----cCCCCh----hhHHHHHHHHHhcCCHHHH
Q 043060 249 LELGNWVCSLIEGH-G-LGSNLHVTNALIDMYSKCGDLVKARDLFES----IEKRDV----ISWNVMIGGYTHTSDYKEA 318 (707)
Q Consensus 249 ~~~a~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~~~----~~~~~li~~~~~~g~~~~A 318 (707)
. . ...+... . ...-..-|.-++..+.+.|.++.+.++-.. ....+. ..|..+..++...|++++|
T Consensus 883 -~---~-~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 883 -R---E-FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp -H---H-HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred -c---c-cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 0 0 0000100 0 011122344555555566655555444322 222221 2466777777777777777
Q ss_pred HHHHHHHhhcCCCCChhhHHhHHHHHhccCCch
Q 043060 319 LMLFRQMLQSNIEPNDVTFLSVLPACAYLGALD 351 (707)
Q Consensus 319 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 351 (707)
...+-.+.....+ ...+..++..++..+..+
T Consensus 958 y~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 958 HVALMVLSTTPLK--KSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp GHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHH
T ss_pred HHHHHhCCCHHHH--HHHHHHHHHHHHhCCChh
Confidence 7777666554332 334455555555555443
No 262
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=75.33 E-value=12 Score=28.70 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhh
Q 043060 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378 (707)
Q Consensus 314 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 378 (707)
+.=+..+-++.+....+.|++......+.||.+.+++..|..+++-+...... ...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence 34456666777777788899988899999999999999998888887765443 2335655543
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.65 E-value=18 Score=42.34 Aligned_cols=65 Identities=9% Similarity=-0.031 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCC-CCc----hhHHHHHHHhhhcCChhhHHHHHHHHhhCCCc
Q 043060 506 IWTSLLGACRVHGRLELGESVAKHLLELEP-ENP----GAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570 (707)
Q Consensus 506 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p-~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 570 (707)
-|..++..+.++|.++.+.+..+.+++..+ +++ ..|..+-..+...|++++|-..+-.+.+...+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 456666777777777777777777776543 222 14566677777778888887777666554443
No 264
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.57 E-value=83 Score=32.05 Aligned_cols=195 Identities=10% Similarity=0.025 Sum_probs=110.7
Q ss_pred CCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCCChhhHHhHHHHH----hcc
Q 043060 282 GDLVKARDLFESIEK-----RD----VISWNVMIGGYTHTSDYKEALMLFRQMLQS-NIEPNDVTFLSVLPAC----AYL 347 (707)
Q Consensus 282 g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~----~~~ 347 (707)
|+++.|.+.+-.+.+ .| ......++..+...|+++...+.+.-+... |..+... ..++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai--~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSI--QYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHH--HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcC
Confidence 678888877655442 22 344667888899999999988877766543 3322222 2333322 233
Q ss_pred CCchHHHHHHHHHHHh------CCCCC---cHHHHhHHhhHHHhcCCHHHHHHHHhcCCC----C-C----hHHHHHHHH
Q 043060 348 GALDLGKWIHAYIDKN------HQKLN---NVSLWTSLIDMYAKCGNIKAAEQVFDGMGY----K-T----LASWNAMIS 409 (707)
Q Consensus 348 ~~~~~a~~~~~~~~~~------~~~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~-~----~~~~~~li~ 409 (707)
...+.... ...... |...- ...+...|...|...|++.+|.+++.++.. . + +..+..-+.
T Consensus 108 ~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33332111 111111 11100 223456788999999999999999987631 1 1 235667778
Q ss_pred HHHHcCCHHHHHHHHHHHHH----CCCCCCHh--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 043060 410 GLAMHGKADKALSLFSRMIG----EGLQPDDI--TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLG 483 (707)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~----~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 483 (707)
.|...+++..|..+++++.. ....|+.. .+...+..+...+++.+|.+ .|..+...+.
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~----------------~y~e~~~~~~ 249 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQ----------------YLQEIYQTDA 249 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHH----------------HHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHH----------------HHHHHHhccc
Confidence 88999999999999988743 21222211 23444444555555555432 2444555566
Q ss_pred HcCCHHHHHHHHH
Q 043060 484 RAGLFDEAEALLK 496 (707)
Q Consensus 484 ~~g~~~~A~~~~~ 496 (707)
..++.......+.
T Consensus 250 ~~~d~~~~~~~L~ 262 (445)
T 4b4t_P 250 IKSDEAKWKPVLS 262 (445)
T ss_dssp HHSCHHHHHHHHH
T ss_pred ccCCHHHHHHHHH
Confidence 6666555444433
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=71.59 E-value=4.2 Score=37.89 Aligned_cols=59 Identities=22% Similarity=0.300 Sum_probs=44.3
Q ss_pred HHHHHcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 043060 480 DLLGRAGLFDEAEALLKT-MEMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 538 (707)
..+.+.|.+++|++.... +..+| |...-..|+..++-.|++++|.+-++...+++|...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 345678888888886665 34455 466667788888888888888888888888888643
No 266
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=70.76 E-value=49 Score=30.71 Aligned_cols=206 Identities=13% Similarity=0.089 Sum_probs=92.1
Q ss_pred ccCCCChHHHHHHHhcCCCCCc----chHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCccc--HHHHHHHHhccCChH
Q 043060 74 VSPFGDLSYALLVFETIREPNQ----VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYT--FPFILKSCAKISAIS 147 (707)
Q Consensus 74 y~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~ 147 (707)
.++.|+++....+++.-...+. ..++.| ...+..|+. ++++.+.+.|..++... -.+.+...+..|+.+
T Consensus 12 A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L-~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 86 (285)
T 1wdy_A 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPL-HNAVQMSRE----DIVELLLRHGADPVLRKKNGATPFLLAAIAGSVK 86 (285)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHH-HHHHHTTCH----HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHcCCCcccccCCCCCcHH-HHHHHcCCH----HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHH
Confidence 3455666666656554433221 122333 223344443 34444455565544321 112233333445543
Q ss_pred HHHHHHHHHHHhCCCCChh--HHHHHHHHHHhCCChhHHHHHHhcCCCCCee-------------hHHHHHHHHHhCCCh
Q 043060 148 EGKQIHAHVLKLGLESDPF--VHTSLINMYAQNGELESARLVFNKSSLRDAV-------------SYTALITGYASRGYL 212 (707)
Q Consensus 148 ~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-------------~~~~li~~~~~~g~~ 212 (707)
+.+.+++.|..++.. .....+...+..|+.+-...+++.-...+.. .+ +.+...+..|+.
T Consensus 87 ----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~-t~L~~A~~~~~~ 161 (285)
T 1wdy_A 87 ----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA-TALMDAAEKGHV 161 (285)
T ss_dssp ----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCC-CHHHHHHHHTCH
T ss_pred ----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCC-cHHHHHHHcCCH
Confidence 344444555444321 1112334445667777777777654432211 11 233344456666
Q ss_pred hHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhH--HHHHHHHHHHhcCCHHHHHHH
Q 043060 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH--VTNALIDMYSKCGDLVKARDL 290 (707)
Q Consensus 213 ~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~ 290 (707)
+-+..+++.... .--..|..-.+.+..+ +..+.......+.+.+.+.|..++.. ...+.+...++.|+.+-+..+
T Consensus 162 ~~v~~Ll~~~~~--~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 238 (285)
T 1wdy_A 162 EVLKILLDEMGA--DVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238 (285)
T ss_dssp HHHHHHHHTSCC--CTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcCC--CCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 665555554210 1011122222223322 33455445566677777777655432 122334444556666666666
Q ss_pred HH
Q 043060 291 FE 292 (707)
Q Consensus 291 ~~ 292 (707)
++
T Consensus 239 l~ 240 (285)
T 1wdy_A 239 LE 240 (285)
T ss_dssp HH
T ss_pred Hh
Confidence 55
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=70.11 E-value=17 Score=29.63 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 043060 417 ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480 (707)
Q Consensus 417 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 480 (707)
.-+..+-++.+....+-|+.......+.+|-+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 345566666777777899999999999999999999999999998877543 34556665553
No 268
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=68.92 E-value=49 Score=31.68 Aligned_cols=60 Identities=12% Similarity=0.207 Sum_probs=44.4
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 495 LKTMEMKPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 495 ~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
|...+++|. ..+..+-+..+.+++|+..|..+.++++++.|... ..++|.++...-.+.+
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 334466665 56778888899999999999999999999998532 2355777776665543
No 269
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=67.88 E-value=1.3e+02 Score=32.07 Aligned_cols=364 Identities=11% Similarity=0.019 Sum_probs=181.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhcc
Q 043060 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHM 246 (707)
Q Consensus 167 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~ 246 (707)
.-+.-+..+.+.+++......+.. +..+...--....+....|+..+|......+-. .... .......++..+.+.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~-~~~~--~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWL-TGKS--QPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHS-CSSC--CCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh-CCCC--CcHHHHHHHHHHHHC
Confidence 344556667778888888887776 434554445566677778887777776666532 1222 233445555555544
Q ss_pred CCchH--HHHHHHHHHHcC-----------CCchh-HHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhh---HHHHHHHH
Q 043060 247 GSLEL--GNWVCSLIEGHG-----------LGSNL-HVTNALIDMYSKCGDLVKARDLFESIEKRDVIS---WNVMIGGY 309 (707)
Q Consensus 247 g~~~~--a~~~~~~~~~~g-----------~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~ 309 (707)
|.+.. ..+=+..+...| ++++. .....++..+.+-..+ ....... .++... ....+.-+
T Consensus 150 g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rl 225 (618)
T 1qsa_A 150 GKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASV 225 (618)
T ss_dssp TCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHH
Confidence 44322 111112222211 11111 1112222222211111 1111111 111111 11122223
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHH----HHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCC
Q 043060 310 THTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP----ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385 (707)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 385 (707)
.+ .+.+.|...|....... ..+......+-. .....+....+...+........ +.....-.+....+.|+
T Consensus 226 ar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~~~r~Alr~~d 300 (618)
T 1qsa_A 226 AR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ---STSLIERRVRMALGTGD 300 (618)
T ss_dssp HH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC---CHHHHHHHHHHHHHHTC
T ss_pred Hh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC---ChHHHHHHHHHHHHCCC
Confidence 33 37789999998886543 223332222222 22333424455555555443322 33334455555667899
Q ss_pred HHHHHHHHhcCCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 043060 386 IKAAEQVFDGMGYKT---LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462 (707)
Q Consensus 386 ~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 462 (707)
++.|...|+.|.... ....-=+..++...|+.++|..+|+++.. +. +|-.++.+ .+.|..-. .
T Consensus 301 ~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~~--~fYg~lAa-~~Lg~~~~-------~ 366 (618)
T 1qsa_A 301 RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QR--GFYPMVAA-QRIGEEYE-------L 366 (618)
T ss_dssp HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SC--SHHHHHHH-HHTTCCCC-------C
T ss_pred HHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc----CC--ChHHHHHH-HHcCCCCC-------C
Confidence 999999999997642 22233355677889999999999999875 22 44444422 22221000 0
Q ss_pred HHhcCCCCC-hH-----HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCC-
Q 043060 463 IQDYKISPK-LQ-----HYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEP- 535 (707)
Q Consensus 463 ~~~~~~~p~-~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p- 535 (707)
......+. .. .-..-+..+...|...+|...+..+.-..+......+.......|..+.+.....+....+.
T Consensus 367 -~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~ 445 (618)
T 1qsa_A 367 -KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHL 445 (618)
T ss_dssp -CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCH
T ss_pred -CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcch
Confidence 00000010 00 11123456778899999988887763233444444555556678888887766654332220
Q ss_pred --CCchhHHHHHHHhhhcCChhhHH
Q 043060 536 --ENPGAYVLLSNMYAGAGRWDDVA 558 (707)
Q Consensus 536 --~~~~~~~~l~~~~~~~g~~~~a~ 558 (707)
.-|..|..++.-+++.-.++...
T Consensus 446 ~~~~P~~y~~~i~~~a~~~gv~~~l 470 (618)
T 1qsa_A 446 EERFPLAYNDLFKRYTSGKEIPQSY 470 (618)
T ss_dssp HHHSCCTTHHHHHHHHTTSSSCHHH
T ss_pred hhhCCcchHHHHHHHHHHcCCCHHH
Confidence 11234555555666555555543
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.46 E-value=29 Score=35.36 Aligned_cols=91 Identities=7% Similarity=-0.049 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccC--CCCch----hHH
Q 043060 474 HYGCMVDLLGRAGLFDEAEALLKTM-----EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE--PENPG----AYV 542 (707)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~~~~----~~~ 542 (707)
....+.+.|.+.|++++|.+.+.++ +..--...+...+..+...+|+..+...+.++..+. ..++. ...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4455667777777777777777665 111125566666777777777777777777765431 11222 122
Q ss_pred HHHHHhhhcCChhhHHHHHHHH
Q 043060 543 LLSNMYAGAGRWDDVATIRTRL 564 (707)
Q Consensus 543 ~l~~~~~~~g~~~~a~~~~~~m 564 (707)
.-+..+...++|.+|.+.|-..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 3344456667777777766554
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=65.12 E-value=44 Score=25.55 Aligned_cols=76 Identities=16% Similarity=0.090 Sum_probs=53.9
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhC
Q 043060 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222 (707)
Q Consensus 143 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 222 (707)
....++|..+-+.+...+- ...+--.-+..+...|++++|..+.+....||..+|-+|-.. +.|..+++..-+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 3456788888887776653 333333444556788999999999998888888888877653 567777777766665
No 272
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=65.04 E-value=73 Score=28.06 Aligned_cols=9 Identities=0% Similarity=0.043 Sum_probs=3.5
Q ss_pred HHHHHHHHh
Q 043060 318 ALMLFRQML 326 (707)
Q Consensus 318 A~~~~~~m~ 326 (707)
+...+.++.
T Consensus 175 ~~~~L~~~l 183 (211)
T 3ltm_A 175 VRAAMEKLA 183 (211)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=64.16 E-value=47 Score=25.48 Aligned_cols=76 Identities=17% Similarity=0.082 Sum_probs=54.3
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhC
Q 043060 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222 (707)
Q Consensus 143 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 222 (707)
....++|..+-+.+...+- ...+--.-+..+...|++++|..+.+....||...|-+|-.. +.|..+++..-+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 3456788888887777653 333334444556788999999999999988899998887654 556677777766666
No 274
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=64.13 E-value=35 Score=27.88 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043060 113 VAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLIN 173 (707)
Q Consensus 113 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 173 (707)
+..+-++.+....+.|++....+.+++|.+.+|+..|.++++-+...- .+...+|..++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 455666666677788999999999999999999999999998776442 333455665554
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.98 E-value=88 Score=27.62 Aligned_cols=88 Identities=11% Similarity=0.170 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHc--cCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCccCCcccEEeEC
Q 043060 504 AAIWTSLLGACRVHGRLELGESVAKHLLE--LEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVG 581 (707)
Q Consensus 504 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~ 581 (707)
...|..++..| ..++...+..+|..+.. ++-.-+..|...+..+...|++.+|.++++.-.+++-+|
T Consensus 80 LklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P---------- 148 (202)
T 3esl_A 80 LKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP---------- 148 (202)
T ss_dssp HHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS----------
T ss_pred HHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc----------
Confidence 44666666554 24446688899998876 556778889999999999999999999999988776532
Q ss_pred CEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCc
Q 043060 582 SVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFV 617 (707)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 617 (707)
.+.+......+..+|.+.+++
T Consensus 149 ---------------~~rL~~~~~~F~~R~~~~~~~ 169 (202)
T 3esl_A 149 ---------------YNRLLRSLSNYEDRLREMNIV 169 (202)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHTTCC
T ss_pred ---------------HHHHHHHHHHHHHHHHhcCCC
Confidence 233444556777788888773
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.08 E-value=67 Score=32.57 Aligned_cols=58 Identities=9% Similarity=0.004 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHhccCCHHHHHHHHHHhH
Q 043060 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDD--ITFVGVLSACNHAGLLDIGRQYFNAMI 463 (707)
Q Consensus 406 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~ 463 (707)
.+..-|.+.|++++|.+.|.++...-..+.. ..+..++..+...+++..+...++++.
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444444444445555555544443222222 134444445555555555555555443
No 277
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=60.02 E-value=87 Score=27.26 Aligned_cols=153 Identities=10% Similarity=0.043 Sum_probs=61.3
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHH
Q 043060 163 SDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSA 242 (707)
Q Consensus 163 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~ 242 (707)
+|..+....+..+.+.|..+....+.+.+..+|...-...+.++.+.|..+..-.+...+ . .++...-...+.+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l----~--d~~~~vr~~a~~a 99 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKAL----K--DEDGWVRQSAAVA 99 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHT----T--CSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHH----c--CCCHHHHHHHHHH
Confidence 344444444444444444333333444444444444444444555555433322222222 1 1344444445555
Q ss_pred HhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 043060 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF 322 (707)
Q Consensus 243 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 322 (707)
+...++.+....+... .+ .++..+....+.++.+.|+.+....+.+.+..++...-...+.++.+.|. .++...+
T Consensus 100 L~~~~~~~~~~~L~~~-l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L 174 (201)
T 3ltj_A 100 LGQIGDERAVEPLIKA-LK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAM 174 (201)
T ss_dssp HHHHCCGGGHHHHHHH-TT---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHH
T ss_pred HHHhCcHHHHHHHHHH-Hc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHH
Confidence 5555543322222221 11 33444444555555555543322223333333343333333444444433 2334444
Q ss_pred HHHh
Q 043060 323 RQML 326 (707)
Q Consensus 323 ~~m~ 326 (707)
..+.
T Consensus 175 ~~~l 178 (201)
T 3ltj_A 175 EKLA 178 (201)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 278
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=52.84 E-value=1.2e+02 Score=26.61 Aligned_cols=17 Identities=18% Similarity=0.079 Sum_probs=7.0
Q ss_pred ChhhHHhHHHHHhccCC
Q 043060 333 NDVTFLSVLPACAYLGA 349 (707)
Q Consensus 333 ~~~t~~~ll~~~~~~~~ 349 (707)
+...-...+.++...+.
T Consensus 156 ~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 156 DGWVRQSAADALGEIGG 172 (211)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33333344444444443
No 279
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=48.23 E-value=1.5e+02 Score=26.40 Aligned_cols=15 Identities=13% Similarity=0.091 Sum_probs=6.8
Q ss_pred HHhcCCHHHHHHHHH
Q 043060 278 YSKCGDLVKARDLFE 292 (707)
Q Consensus 278 ~~~~g~~~~A~~~~~ 292 (707)
.++.|+.+-+..+++
T Consensus 157 A~~~~~~~~v~~Ll~ 171 (241)
T 1k1a_A 157 AVENNSLSMVQLLLQ 171 (241)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 344455544444444
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=46.65 E-value=1.1e+02 Score=25.51 Aligned_cols=49 Identities=8% Similarity=0.079 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHc--cCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 521 ELGESVAKHLLE--LEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 521 ~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+.+..+|..+.. ++-.-+..|...+..+...|++.+|.++++.-.+++-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 337788888876 4566777888999999999999999999988887765
No 281
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=46.07 E-value=1.5e+02 Score=25.71 Aligned_cols=79 Identities=16% Similarity=0.141 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhc
Q 043060 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346 (707)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 346 (707)
|..+....+..+.+.|..+....+.+.+..+|...-...+.++...|.. ++...+.++.. .++...-...+.++..
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 3444444444444444433333334444444444433444444444432 23333333332 2333333344444444
Q ss_pred cCC
Q 043060 347 LGA 349 (707)
Q Consensus 347 ~~~ 349 (707)
.++
T Consensus 103 ~~~ 105 (201)
T 3ltj_A 103 IGD 105 (201)
T ss_dssp HCC
T ss_pred hCc
Confidence 444
No 282
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=45.04 E-value=1.3e+02 Score=26.45 Aligned_cols=59 Identities=10% Similarity=0.177 Sum_probs=39.1
Q ss_pred CCchHHHHHHHHHHHcCCCch-hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHH
Q 043060 247 GSLELGNWVCSLIEGHGLGSN-LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVM 305 (707)
Q Consensus 247 g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 305 (707)
++......+|..|...|+... ...|......+...|++.+|.++|+.-.+.+......|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL 152 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRL 152 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 335677888888888877654 44567777777777888888777776554444333333
No 283
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=44.29 E-value=1.4e+02 Score=24.97 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHH
Q 043060 147 SEGKQIHAHVLKLGLESD-PFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGY 206 (707)
Q Consensus 147 ~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 206 (707)
+.+..+|..|.+.|+... ...|......+-..|++.+|..+|+.-.+++......|...|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~ 142 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQY 142 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 447788888887776544 445777777777788888888888766555555555554433
No 284
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=44.25 E-value=73 Score=25.83 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=43.9
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCCCCC---hHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCH
Q 043060 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKT---LASWNAMISGLAMHGK--ADKALSLFSRMIGEGLQPDD 436 (707)
Q Consensus 373 ~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 436 (707)
.+.++.-|...|+.++|.+.++++..+. ......+..++-+.++ .+....++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4667888888999999999999887552 2344555556655442 35677888888776654433
No 285
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=41.22 E-value=1.5e+02 Score=25.19 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHc--cCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 505 AIWTSLLGACRVHGRLELGESVAKHLLE--LEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 505 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.+|..++..| +.+..+|..+.. ++-.-+..|...+..+...|++.+|.++++.-++++-
T Consensus 67 klWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 67 NLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 3555444443 336677877775 4566778888999999999999999999998888765
No 286
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=40.24 E-value=44 Score=30.72 Aligned_cols=117 Identities=9% Similarity=-0.095 Sum_probs=62.3
Q ss_pred HHHcCCCchHHHHHHHHHHHCCCCCCcc-------cHHHHHHHHh--ccCChHHHHHHHHHHHHhC---------CCCCh
Q 043060 104 GHSLSSSPVVAIKFYVRMILSGFVPNTY-------TFPFILKSCA--KISAISEGKQIHAHVLKLG---------LESDP 165 (707)
Q Consensus 104 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---------~~~~~ 165 (707)
..++.|+.+....+++.+.+.|..++.. -.+.|..++. +.|+.+-++.+++.-...+ +....
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 90 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY 90 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc
Confidence 3345677887777777777766555533 2234444432 5677777777766544311 10000
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHhcCCCCCee----------------hHHHHHHHHHhCCChhHHHHHHH
Q 043060 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAV----------------SYTALITGYASRGYLDDARQLFD 220 (707)
Q Consensus 166 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~----------------~~~~li~~~~~~g~~~~A~~l~~ 220 (707)
....+.+...+..|+.+-+..+++.-...+.. .-.+.+...+..|+.+-+.-+++
T Consensus 91 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 91 YRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp EESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 01122344456678888888777754433221 12233444456677665555555
No 287
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=39.22 E-value=3.9e+02 Score=28.67 Aligned_cols=32 Identities=9% Similarity=0.134 Sum_probs=23.2
Q ss_pred hHHHHHHHHH-----HHHcCCHHHHHHHHHhCCCCCC
Q 043060 472 LQHYGCMVDL-----LGRAGLFDEAEALLKTMEMKPD 503 (707)
Q Consensus 472 ~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~~p~ 503 (707)
..++..|.++ +...|++++|++.++++++-|.
T Consensus 533 ~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 533 KEICMLLLNISSIRELYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 3455544433 4789999999999999977774
No 288
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=37.12 E-value=1.9e+02 Score=28.83 Aligned_cols=19 Identities=32% Similarity=0.358 Sum_probs=8.9
Q ss_pred HHcCCHHHHHHHHHhCCCCC
Q 043060 483 GRAGLFDEAEALLKTMEMKP 502 (707)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~p 502 (707)
.+.|+.+-+.-+++ .+..|
T Consensus 352 ~~~g~~~iv~~Ll~-~ga~~ 370 (437)
T 1n11_A 352 AQQGHTDIVTLLLK-NGASP 370 (437)
T ss_dssp HHTTCHHHHHHHHH-TTCCS
T ss_pred HHCChHHHHHHHHH-CcCCC
Confidence 34566554444444 34333
No 289
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=35.93 E-value=59 Score=29.69 Aligned_cols=20 Identities=15% Similarity=0.076 Sum_probs=11.7
Q ss_pred HHHHHhCCChhHHHHHHHhC
Q 043060 203 ITGYASRGYLDDARQLFDEM 222 (707)
Q Consensus 203 i~~~~~~g~~~~A~~l~~~m 222 (707)
++.+....++++|++++++.
T Consensus 25 LDv~IA~r~feeAv~lle~~ 44 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDI 44 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 44555566666666666554
No 290
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=35.30 E-value=3.4e+02 Score=26.88 Aligned_cols=88 Identities=10% Similarity=0.080 Sum_probs=51.6
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHH---HHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHH
Q 043060 469 SPKLQHYGCMVDLLGRAGLFDEAEALLKTME--MKPDAAIWT---SLLGACRVHGRLELGESVAKHLLELEPENPGAYVL 543 (707)
Q Consensus 469 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~---~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 543 (707)
.|....+..++.+| +.+++.+..++++... +..|..... .|..... ...+.++ ..|-.......
T Consensus 253 ~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~~~L~~i--~~pYsrIsl~~ 321 (394)
T 3txn_A 253 GRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------EQNLCRI--IEPYSRVQVAH 321 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------HHHHHHH--HTTCSEEEHHH
T ss_pred CccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------HHHHHHH--hHhhceeeHHH
Confidence 45555566666654 5678888888887762 444554321 1111111 1111122 24666667777
Q ss_pred HHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 544 LSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 544 l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
++..+.- ..+++....-+|...|.
T Consensus 322 iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 322 VAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 7777654 67899999999988776
No 291
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=35.29 E-value=70 Score=26.86 Aligned_cols=63 Identities=17% Similarity=0.224 Sum_probs=42.7
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCCCCC---hHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCC
Q 043060 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKT---LASWNAMISGLAMHGK--ADKALSLFSRMIGEGLQPD 435 (707)
Q Consensus 373 ~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 435 (707)
.+.++.-|...|+.++|.+.++++..+. ......+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4667888888899999999999887552 2344555555555333 4557777877777665443
No 292
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.22 E-value=3.3e+02 Score=30.90 Aligned_cols=91 Identities=7% Similarity=-0.127 Sum_probs=52.1
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCC-----------------
Q 043060 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM--EMKP----------------- 502 (707)
Q Consensus 442 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p----------------- 502 (707)
++..|...|..+-+.++..-. +.+...--.+..+|...|++++|...|+++ ++.+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 555666666666655433221 123222224556677777777777777765 2110
Q ss_pred ---C---HHHHHHHHHHHHhcCChhHHHHHHHHHHcc-CCCCc
Q 043060 503 ---D---AAIWTSLLGACRVHGRLELGESVAKHLLEL-EPENP 538 (707)
Q Consensus 503 ---~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~p~~~ 538 (707)
+ ..-|..++..+.+++-++-+.+..+.+++. .++++
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 0 124566666777777777777777777753 34443
No 293
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=34.93 E-value=1.7e+02 Score=25.68 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=33.0
Q ss_pred HHHHHHHHHhCCCCCC--HH-----HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 043060 488 FDEAEALLKTMEMKPD--AA-----IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547 (707)
Q Consensus 488 ~~~A~~~~~~~~~~p~--~~-----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 547 (707)
++.|+.+|+.+.-.-| .. .--..+..|.+.|.+++|.+++++.....+.+...-.-|..+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4566777776643322 11 112345678888999999999888887776555444444433
No 294
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.77 E-value=1.8e+02 Score=23.44 Aligned_cols=62 Identities=18% Similarity=0.332 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHhcCC--HHHHHHHHHHHhhcCCCC
Q 043060 271 TNALIDMYSKCGDLVKARDLFESIEKRD---VISWNVMIGGYTHTSD--YKEALMLFRQMLQSNIEP 332 (707)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 332 (707)
.+.++.=|...|+.++|.+.++++..|. .+....+..++-+.+. .+.+..++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3456777778888888888888887552 2334444455555432 356777777777666443
No 295
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=34.26 E-value=2.7e+02 Score=25.31 Aligned_cols=47 Identities=6% Similarity=-0.015 Sum_probs=21.4
Q ss_pred cCCchHHHHHHHHHHHhCCCCCcHH--HHhHHhhHHHhcCCHHHHHHHHh
Q 043060 347 LGALDLGKWIHAYIDKNHQKLNNVS--LWTSLIDMYAKCGNIKAAEQVFD 394 (707)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~y~~~g~~~~A~~~~~ 394 (707)
.+.......+.+.+.+.|... +.. ...+.+...++.|+.+-+..+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 344444455555566555433 111 11122333445566665555555
No 296
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=34.18 E-value=3e+02 Score=26.19 Aligned_cols=55 Identities=11% Similarity=0.154 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHhcCCCCC--eehHHHHHHHHHhCCCh--hHHHHHHHhC
Q 043060 168 HTSLINMYAQNGELESARLVFNKSSLRD--AVSYTALITGYASRGYL--DDARQLFDEM 222 (707)
Q Consensus 168 ~~~li~~~~~~g~~~~A~~~f~~~~~~~--~~~~~~li~~~~~~g~~--~~A~~l~~~m 222 (707)
...++.-|...|+.++|...++++..+. ...-..+|......++. +.+-.++..+
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L 64 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDL 64 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4567888888889999999998887663 12222333333333332 3344555555
No 297
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=34.10 E-value=2.8e+02 Score=27.05 Aligned_cols=184 Identities=14% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 043060 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYS 279 (707)
Q Consensus 200 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 279 (707)
..+|.-|...++.++|...++++ ......|..+....-...=.+...-+.+-.++..+.. ++-+.......+...+.
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL--~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~lle 134 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDL--NLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDKLLK 134 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT--TCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh--CCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Q ss_pred hcCCHH-------------HHHHHHHhcCCCChhh---------------------------------------------
Q 043060 280 KCGDLV-------------KARDLFESIEKRDVIS--------------------------------------------- 301 (707)
Q Consensus 280 ~~g~~~-------------~A~~~~~~~~~~~~~~--------------------------------------------- 301 (707)
...++. -|+.+.+.+..+....
T Consensus 135 ~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~~~ve 214 (358)
T 3eiq_C 135 DLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQPVN 214 (358)
T ss_dssp THHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC---------CCCCCCSSSCHH
T ss_pred hhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCCccHH
Q ss_pred -----HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhc-cCCchHHHHHHHHHHHhCCCCCcHHHHhH
Q 043060 302 -----WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY-LGALDLGKWIHAYIDKNHQKLNNVSLWTS 375 (707)
Q Consensus 302 -----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 375 (707)
.+.++.-|...|+.++|.+.++++..-...+..+.....+..-.. ....+...+++..+.+.+... .......
T Consensus 215 elkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls-~~q~~~G 293 (358)
T 3eiq_C 215 HLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT-IDQMKRG 293 (358)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC-HHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC-HHHHHHH
Q ss_pred HhhHHHhcCCHH
Q 043060 376 LIDMYAKCGNIK 387 (707)
Q Consensus 376 li~~y~~~g~~~ 387 (707)
+...+....++.
T Consensus 294 f~~vl~~ldDl~ 305 (358)
T 3eiq_C 294 YERIYNEIPDIN 305 (358)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhccHhh
No 298
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=32.77 E-value=14 Score=22.58 Aligned_cols=10 Identities=40% Similarity=1.152 Sum_probs=8.5
Q ss_pred cCccccCCCC
Q 043060 697 KDGNCSCNDY 706 (707)
Q Consensus 697 ~~g~~s~~~~ 706 (707)
.+|-|||+-|
T Consensus 20 ~~~~C~CG~y 29 (42)
T 2l0z_A 20 SLGGCRCGKY 29 (42)
T ss_dssp TTSSBTTTTB
T ss_pred CCceeccccc
Confidence 6899999876
No 299
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=32.38 E-value=1.1e+02 Score=29.29 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=43.5
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 495 LKTMEMKPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 495 ~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
|...+++|. ..+..+-+..+.+++++..|..+.++++++.|... ..++|.++...-.+.+
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 333456664 55777888889999999999999999999987522 2345777776665544
No 300
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.45 E-value=1.4e+02 Score=27.16 Aligned_cols=87 Identities=13% Similarity=0.124 Sum_probs=43.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC--CCCC----CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 043060 407 MISGLAMHGKADKALSLFSRMIGE--GLQP----DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480 (707)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 480 (707)
-+..+..+.++++|++++++..+. +.++ +.......+..-.....-.-+..+.+.+ . . .++.......+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~--~-~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-L--S-SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-H--T-CSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-H--h-cCCHHHHHHHHH
Confidence 345566667777777776655431 1221 1112222222222222222233333333 2 1 345555666678
Q ss_pred HHHHcCCHHHHHHHHHh
Q 043060 481 LLGRAGLFDEAEALLKT 497 (707)
Q Consensus 481 ~~~~~g~~~~A~~~~~~ 497 (707)
.+.|.|+.++|.++|-+
T Consensus 100 ~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHH
Confidence 88888888888887754
No 301
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=29.89 E-value=2.9e+02 Score=28.62 Aligned_cols=68 Identities=16% Similarity=0.038 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHH----HHHHHH-ccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 501 KPDAAIWTSLLGACRVHGRLELGES----VAKHLL-ELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 501 ~p~~~~~~~ll~~~~~~g~~~~A~~----~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
.+|......|-.-+..+|..++-.+ .++.-+ +..|++......|-.-|.+.|++-+|.+++..+...+
T Consensus 175 s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred CChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 3465555566666666666543322 111111 2334555566677777899999999999998888763
No 302
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.85 E-value=4.2e+02 Score=30.06 Aligned_cols=127 Identities=8% Similarity=-0.089 Sum_probs=74.1
Q ss_pred HHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCch
Q 043060 171 LINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250 (707)
Q Consensus 171 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~ 250 (707)
++..+...|..+-|.++..-.+. +...--.+..+|...|++++|.++|++.- .|+..+....... .
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA---~gl~~~~~~~~~~----------~ 881 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS---LVLYSHTSQFAVL----------R 881 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC---CTTCSSCCSCGGG----------H
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh---hhcccCcccccch----------h
Confidence 66677778888888877766664 44444456788899999999999999973 4443322111000 0
Q ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHh----cCCCCh----hhHHHHHHHHHhcC
Q 043060 251 LGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES----IEKRDV----ISWNVMIGGYTHTS 313 (707)
Q Consensus 251 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~~~----~~~~~li~~~~~~g 313 (707)
....++.... .-.....-|.-++..+-+.+.++.+.++-+. +...|. ..|+.+..+.+..|
T Consensus 882 ~~~~ll~~~e--~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 882 EFQEIAEKYH--HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHTT--TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhccCccc--ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0001111000 0011234677788888888888776655433 333333 35777777766554
No 303
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=29.62 E-value=3.3e+02 Score=24.94 Aligned_cols=9 Identities=22% Similarity=0.534 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 043060 420 ALSLFSRMI 428 (707)
Q Consensus 420 A~~~~~~m~ 428 (707)
++..+.++.
T Consensus 253 ~~~~L~~~l 261 (280)
T 1oyz_A 253 LLPVLDTML 261 (280)
T ss_dssp GHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 344444443
No 304
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=29.54 E-value=4.3e+02 Score=26.18 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=9.8
Q ss_pred HHHhCCChhHHHHHHhcC
Q 043060 174 MYAQNGELESARLVFNKS 191 (707)
Q Consensus 174 ~~~~~g~~~~A~~~f~~~ 191 (707)
..++.|+.+.+..+++.-
T Consensus 119 ~A~~~g~~~~v~~Ll~~~ 136 (437)
T 1n11_A 119 IAAREGHVETVLALLEKE 136 (437)
T ss_dssp HHHHHTCHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHhCC
Confidence 334556666666665543
No 305
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=29.33 E-value=73 Score=28.66 Aligned_cols=49 Identities=10% Similarity=0.124 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHc--cCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 521 ELGESVAKHLLE--LEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 521 ~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+.+..+|..+.. ++-.-+..|...+..+...|++.+|.++|+.-++++-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 466678887775 4566778888999999999999999999988877665
No 306
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=29.30 E-value=1.8e+02 Score=25.90 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=9.4
Q ss_pred hccCCchHHHHHHHHHHHcC
Q 043060 244 AHMGSLELGNWVCSLIEGHG 263 (707)
Q Consensus 244 ~~~g~~~~a~~~~~~~~~~g 263 (707)
+..|+.+..+.+++.+.+.|
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 33455555555544444444
No 307
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.30 E-value=3e+02 Score=28.43 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC-------chhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN-------PGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 504 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
...+|.++..|...+.++.|..+..+.. .|.+ ...++.++.++.-.+++.+|.+.+.....+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5567777777777777777777777664 3322 123445677888888888888877776543
No 308
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=28.04 E-value=3.5e+02 Score=24.74 Aligned_cols=61 Identities=11% Similarity=-0.040 Sum_probs=25.3
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 043060 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534 (707)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 534 (707)
++...-...+.++++.|..+....+.+.+. .|+ +-...+.++...|+ ..+...+.++++..
T Consensus 204 ~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~-d~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~~ 264 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRKDKRVLSVLCDELK-KNT--VYDDIIEAAGELGD-KTLLPVLDTMLYKF 264 (280)
T ss_dssp SCHHHHHHHHHHHHHTTCGGGHHHHHHHHT-SSS--CCHHHHHHHHHHCC-GGGHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHhCCHhhHHHHHHHhc-Ccc--HHHHHHHHHHhcCc-hhhhHHHHHHHhcC
Confidence 344444444455555554333323333332 123 22233444455554 24445555555433
No 309
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=27.86 E-value=26 Score=26.02 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=25.0
Q ss_pred CcChHHHHHHHHHHHHHHHHcCCccCCcccc
Q 043060 594 HPQSKHIYEMLDEIDALLEKSGFVPDTSEVL 624 (707)
Q Consensus 594 ~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~ 624 (707)
.++..++.+.+++-...++..||.||...+-
T Consensus 12 rgdlirIl~~ieekinELk~dG~ePDIiL~G 42 (103)
T 2pk8_A 12 RGDLIRILGEIEEKMNELKMDGFNPDIILFG 42 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCCCeEEEc
Confidence 3456678888888899999999999987554
No 310
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=27.01 E-value=1.3e+02 Score=31.09 Aligned_cols=76 Identities=12% Similarity=0.047 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhh
Q 043060 475 YGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAG 550 (707)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 550 (707)
.-+|.+...-.+.++.|...|.++ .+.|+ ...||.|.-.....|+.-.|.-.|-+.+....+.+.+..+|...+.+
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 334555555566677777777765 44555 66777777777777777777777777666554466666666665543
No 311
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.63 E-value=97 Score=23.54 Aligned_cols=39 Identities=21% Similarity=0.173 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHH
Q 043060 282 GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALM 320 (707)
Q Consensus 282 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 320 (707)
...+.|.++++.++.++..+|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 468889999999999999999999999987777655533
No 312
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=25.53 E-value=1.2e+02 Score=25.49 Aligned_cols=24 Identities=21% Similarity=0.420 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhC
Q 043060 199 YTALITGYASRGYLDDARQLFDEM 222 (707)
Q Consensus 199 ~~~li~~~~~~g~~~~A~~l~~~m 222 (707)
.+.++.-|...|+.++|.+.++++
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh
Confidence 345666777777777777777776
No 313
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.05 E-value=2.7e+02 Score=23.68 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=8.1
Q ss_pred HHHHHHHHHcCCCch
Q 043060 253 NWVCSLIEGHGLGSN 267 (707)
Q Consensus 253 ~~~~~~~~~~g~~~~ 267 (707)
.++.+.+++.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 455555566655443
No 314
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=25.02 E-value=2.5e+02 Score=25.99 Aligned_cols=14 Identities=7% Similarity=0.031 Sum_probs=5.7
Q ss_pred HhcCCHHHHHHHHH
Q 043060 279 SKCGDLVKARDLFE 292 (707)
Q Consensus 279 ~~~g~~~~A~~~~~ 292 (707)
+..|+.+-+..+++
T Consensus 137 ~~~~~~~~v~~Ll~ 150 (285)
T 3kea_A 137 VMLNDVSIVSYFLS 150 (285)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHcCCHHHHHHHHh
Confidence 33444444433333
No 315
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.01 E-value=65 Score=24.52 Aligned_cols=38 Identities=8% Similarity=-0.052 Sum_probs=29.3
Q ss_pred CChHHHHHHHhcCCCCCcchHHHHHHHHHcCCCchHHH
Q 043060 78 GDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAI 115 (707)
Q Consensus 78 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 115 (707)
.+.+.|+++++.++.+...+|..++.++...|...-|-
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 56788888888888888888888888887666655443
No 316
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=24.57 E-value=3.6e+02 Score=24.88 Aligned_cols=22 Identities=5% Similarity=0.135 Sum_probs=11.5
Q ss_pred HHHHHhccCCchHHHHHHHHHH
Q 043060 239 VLSACAHMGSLELGNWVCSLIE 260 (707)
Q Consensus 239 ll~~~~~~g~~~~a~~~~~~~~ 260 (707)
.+...+..|..+-+..+++.-.
T Consensus 164 ~L~~A~~~g~~~~v~~Ll~~ga 185 (285)
T 3kea_A 164 CIHITIKNGHVDMMILLLDYMT 185 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHcCC
Confidence 3334445566666665555543
No 317
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=24.18 E-value=1.8e+02 Score=25.73 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=8.2
Q ss_pred HHhCCChhHHHHHHhc
Q 043060 175 YAQNGELESARLVFNK 190 (707)
Q Consensus 175 ~~~~g~~~~A~~~f~~ 190 (707)
.+..|+.+-+..+++.
T Consensus 84 A~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 84 AAKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHHTTCHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHhC
Confidence 3445555555555544
No 318
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=23.54 E-value=2.2e+02 Score=25.12 Aligned_cols=25 Identities=8% Similarity=-0.093 Sum_probs=14.1
Q ss_pred HHHHhccCCchHHHHHHHHHHHcCC
Q 043060 240 LSACAHMGSLELGNWVCSLIEGHGL 264 (707)
Q Consensus 240 l~~~~~~g~~~~a~~~~~~~~~~g~ 264 (707)
+...+..|+.+.+..+++.+.+.|.
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCC
Confidence 3334455666666666666666554
No 319
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=23.00 E-value=1.2e+02 Score=25.71 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=10.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC
Q 043060 411 LAMHGKADKALSLFSRMIGEGLQP 434 (707)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~g~~p 434 (707)
+...|++.+|.++|+.-++.+.+|
T Consensus 106 lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 106 YEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCc
Confidence 333444444444444444444444
No 320
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.93 E-value=2.1e+02 Score=29.53 Aligned_cols=61 Identities=7% Similarity=0.019 Sum_probs=35.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh--HH-HHHHHHHHHHcCCHHHHHHHHHhC
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL--QH-YGCMVDLLGRAGLFDEAEALLKTM 498 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~-~~~li~~~~~~g~~~~A~~~~~~~ 498 (707)
.++.++..|.+.+.++.|..+.....--....++. .. +-.+...+.-.+++.+|.+.+...
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 56667777788888888888877652100001111 11 223455666778888887777664
No 321
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=22.90 E-value=4.9e+02 Score=24.66 Aligned_cols=66 Identities=5% Similarity=0.159 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCC--HHHHHHHHHHhHHhcCCCCC
Q 043060 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL--LDIGRQYFNAMIQDYKISPK 471 (707)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~ 471 (707)
.+.++.-|...|+.++|.+.++++......+ .+....+..+..+.++ .+....++..+.+. ++-+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~-~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKS-STITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH-CSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHC-CCCCH
Confidence 4456666666677777777776664211111 1233344444444322 34455566665544 44333
No 322
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=22.27 E-value=2e+02 Score=25.39 Aligned_cols=212 Identities=9% Similarity=-0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCcccHH--HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCC
Q 043060 115 IKFYVRMILSGFVPNTYTFP--FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS 192 (707)
Q Consensus 115 ~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 192 (707)
.++++.+.+.|..++..... +.+...+..|+.+-.+.+++.-.... ..+.......+...+..|+.+-+..+++.-.
T Consensus 22 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~ 100 (240)
T 3eu9_A 22 YERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD-QLGGDLNSTPLHWATRQGHLSMVVQLMKYGA 100 (240)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBTTTTBCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred hHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcch-hhcCCcCCChhHHHHHcCCHHHHHHHHHcCC
Q ss_pred CCCeehHH--HHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHH
Q 043060 193 LRDAVSYT--ALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270 (707)
Q Consensus 193 ~~~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 270 (707)
..+..... +.+...+..|+.+-+..+++.- ..+......-.+.+...+..+......+++...-..--..+...
T Consensus 101 ~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~----~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~ 176 (240)
T 3eu9_A 101 DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG----QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYH 176 (240)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTT
T ss_pred CCcccCCCCCCHHHHHHHcCHHHHHHHHHhcC----CCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccC
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHH--HHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043060 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWN--VMIGGYTHTSDYKEALMLFRQMLQSNIE 331 (707)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~ 331 (707)
..+.+...++.|+.+-+..+++.-...+..... +-+....+.|+.+-+.-+++...+.+..
T Consensus 177 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~ 239 (240)
T 3eu9_A 177 KNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239 (240)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC------
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccCcC
No 323
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=21.84 E-value=3.3e+02 Score=24.73 Aligned_cols=124 Identities=10% Similarity=-0.074 Sum_probs=63.5
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCC-------CcccHHHHHHHHh--ccCChHHHHHHHHHHHHhC----
Q 043060 94 NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVP-------NTYTFPFILKSCA--KISAISEGKQIHAHVLKLG---- 160 (707)
Q Consensus 94 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-------~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---- 160 (707)
|..-++.|..+ ++.|+.+....+++.....+... |..-.+.|..++. +.|+.+-++.+++.-...+
T Consensus 10 d~~g~t~L~~A-~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~ 88 (273)
T 2pnn_A 10 RLYDRRSIFDA-VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ 88 (273)
T ss_dssp -CCCHHHHHHH-HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred CcccchHHHHH-HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence 33444444444 45677777777777666555332 3334445555543 3467766666666543211
Q ss_pred -----CC-CChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCe-----------------ehHHHHHHHHHhCCChhHHHH
Q 043060 161 -----LE-SDPFVHTSLINMYAQNGELESARLVFNKSSLRDA-----------------VSYTALITGYASRGYLDDARQ 217 (707)
Q Consensus 161 -----~~-~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~-----------------~~~~~li~~~~~~g~~~~A~~ 217 (707)
.. .|..-.+ .+...+..|+.+-+..+++.-...+. .-++ .+...+..|+.+-+.-
T Consensus 89 ~i~~~~~~~d~~g~t-pL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~t-pL~~A~~~g~~~~v~~ 166 (273)
T 2pnn_A 89 FVNASYTDSYYKGQT-ALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGEL-PLSLAACTNQLAIVKF 166 (273)
T ss_dssp HHTCCCCSTTTTTCC-HHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBS-HHHHHHHTTCHHHHHH
T ss_pred HhhcccccccCCCCC-HHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCC-HHHHHHHcCCHHHHHH
Confidence 10 1112222 33344567888888777776443322 1223 3344455677665555
Q ss_pred HHH
Q 043060 218 LFD 220 (707)
Q Consensus 218 l~~ 220 (707)
+++
T Consensus 167 Ll~ 169 (273)
T 2pnn_A 167 LLQ 169 (273)
T ss_dssp HHH
T ss_pred HHh
Confidence 555
No 324
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=21.11 E-value=4.1e+02 Score=23.66 Aligned_cols=69 Identities=14% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHhcCCCCCh------HHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCh
Q 043060 452 LDIGRQYFNAMIQDYKISPKL------QHYGCMVDLLGRAGLFDEAEALLKT-MEMKPDAAIWTSLLGACRVHGRL 520 (707)
Q Consensus 452 ~~~a~~~~~~~~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~ll~~~~~~g~~ 520 (707)
++.|..+|+.+.+...+..+. ..--..+-.|.+.|.+++|.+++++ ++..|+..-...-+....+.+|.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc
No 325
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=21.01 E-value=2.4e+02 Score=27.23 Aligned_cols=18 Identities=22% Similarity=0.080 Sum_probs=8.8
Q ss_pred HHHhcCCHHHHHHHHHhc
Q 043060 277 MYSKCGDLVKARDLFESI 294 (707)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~ 294 (707)
..+..|+.+-+..+++.-
T Consensus 59 ~A~~~g~~~~v~~Ll~~g 76 (364)
T 3ljn_A 59 LACKFGCVDTAKYLASVG 76 (364)
T ss_dssp HHHHHCCHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHCC
Confidence 334455555555555443
No 326
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=20.67 E-value=4.6e+02 Score=25.46 Aligned_cols=83 Identities=17% Similarity=0.263 Sum_probs=50.6
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcc-C------
Q 043060 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTM-------E-MKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL-E------ 534 (707)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~------ 534 (707)
-.+.-|..+...+.|.+++.+|++.+.+. . .+-|..+|.-++..-.. .-=.+++++.+. +
T Consensus 294 ~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAne-----liP~~~k~a~~~~~~~G~~~ 368 (472)
T 3re2_A 294 HHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEIAND-----LIPNILKDAVAKADPSGTGS 368 (472)
T ss_dssp CCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHT-----HHHHHHHHHHTCC-------
T ss_pred CCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHH-----HhhHHHHhhhhccCCCCcch
Confidence 35567888899999999999999988775 1 22356666555432211 000111211111 2
Q ss_pred ---CCCchhHHHHHHHhhhcCChhhH
Q 043060 535 ---PENPGAYVLLSNMYAGAGRWDDV 557 (707)
Q Consensus 535 ---p~~~~~~~~l~~~~~~~g~~~~a 557 (707)
-+||..+..|+..|-...+|+|.
T Consensus 369 ~siL~DpecfA~LLrFYDgIC~WEEG 394 (472)
T 3re2_A 369 TNLTSDPKFFALVLQFYDGICLWEEG 394 (472)
T ss_dssp -CGGGCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhccChHHHHHHHHHhhcceecccC
Confidence 13778888888888777777664
No 327
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=20.67 E-value=22 Score=21.90 Aligned_cols=12 Identities=33% Similarity=0.819 Sum_probs=9.5
Q ss_pred cccccCchhHHH
Q 043060 663 NLRVCGNCHSAT 674 (707)
Q Consensus 663 ~~~~c~~~~~~~ 674 (707)
+.|+|.+|+.-+
T Consensus 16 ~YRvC~~CgkPi 27 (44)
T 2lo3_A 16 QYRVCEKCGKPL 27 (44)
T ss_dssp CEEECTTTCCEE
T ss_pred cchhhcccCCcc
Confidence 789999998543
No 328
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.62 E-value=1.8e+02 Score=23.85 Aligned_cols=63 Identities=8% Similarity=0.059 Sum_probs=38.0
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHH
Q 043060 425 SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489 (707)
Q Consensus 425 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 489 (707)
+.+.+.|++++..=. .++..+...+..-.|.++++.+.+. +...+..|..--++.+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEE
Confidence 345667777665422 2334444445556677788877654 44456666556677888888753
No 329
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=20.61 E-value=1.8e+02 Score=26.37 Aligned_cols=115 Identities=8% Similarity=-0.064 Sum_probs=61.8
Q ss_pred HHHcCCCchHHHHHHHHHHHCCCCCCc-------ccHHHHHHHHhc--cCChHHHHHHHHHHHHhCCCC----------C
Q 043060 104 GHSLSSSPVVAIKFYVRMILSGFVPNT-------YTFPFILKSCAK--ISAISEGKQIHAHVLKLGLES----------D 164 (707)
Q Consensus 104 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~----------~ 164 (707)
..++.|+.+....+++.+.+.|..++. .-.+.|..++.. .|+.+-++.+++.-...+... |
T Consensus 8 ~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 87 (256)
T 2etb_A 8 SVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEF 87 (256)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTT
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccccccc
Confidence 345567777777777777776655443 233344433322 277776766666544432111 1
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHhcCCCCCee----------------hHHHHHHHHHhCCChhHHHHHHH
Q 043060 165 PFVHTSLINMYAQNGELESARLVFNKSSLRDAV----------------SYTALITGYASRGYLDDARQLFD 220 (707)
Q Consensus 165 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~----------------~~~~li~~~~~~g~~~~A~~l~~ 220 (707)
.. ..+.+...+..|+.+-+..+++.-...+.. -++. +...+..|+.+-+.-+++
T Consensus 88 ~~-g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tp-L~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 88 YQ-GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP-LSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp TT-TCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSH-HHHHHHTTCHHHHHHHHH
T ss_pred cc-CCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCH-HHHHHHcCCHHHHHHHHh
Confidence 11 223344456778888888888764433221 2333 344456677766655555
Done!