BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043061
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 81/179 (45%), Gaps = 25/179 (13%)
Query: 139 NFRVEGGGTIDGNGKV--------WWR-------KSCKVNKSLAVTFYGCKNVRVSSLRF 183
N + G GTIDG G V WW K K N + KN + ++
Sbjct: 110 NSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSL 169
Query: 184 RNSQKMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIV 243
NS H+ F A + P + NTDGI ++NI I I TGDD ++I
Sbjct: 170 INSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIK 229
Query: 244 S--GSKNVRATDII---CGPGHGISIGSLGAGNSEAFVSNVLVNRARLSGTTNGVRIKT 297
+ G R I+ G GHG+SIGS G V NV V+ +++GTTNG+RIK+
Sbjct: 230 AYKGRAETRNISILHNDFGTGHGMSIGSETMG-----VYNVTVDDLKMNGTTNGLRIKS 283
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 12/161 (7%)
Query: 145 GGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLR---FRNSQKMHLTFQYCVNVRA 201
G IDG+G WW F +V S+ + +N+ ++ Q NV
Sbjct: 77 GAVIDGDGSRWWDSKGTNGGKTKPKFMYIHDVEDSTFKGINIKNTPVQAISVQ-ATNVH- 134
Query: 202 LNLLVIAPGNSP-----NTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIIC 256
LN I + NTDG ++ + + I ++ DDCI+I SG +++ T C
Sbjct: 135 LNDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINSG-ESISFTGGTC 193
Query: 257 GPGHGISIGSLGAGNSEAFVSNVLVNRARLSGTTNGVRIKT 297
GHG+SIGS+G G + V NV ++ + +S + NGVRIKT
Sbjct: 194 SGGHGLSIGSVG-GRDDNTVKNVTISDSTVSNSANGVRIKT 233
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 125/331 (37%), Gaps = 97/331 (29%)
Query: 43 PASSTKIVNVDDFEAKADG-TDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPITFSG 101
P + VN+ DF A+ DG TD S++F A EE S + L+VP + +G
Sbjct: 21 PQIPDREVNLLDFGARGDGRTDCSESFKRAIEE-LSKQGGGRLIVPEG-------VFLTG 72
Query: 102 P--CKSDLTMKIYGTIKASVRLSDYSRDPRHWLV-----FENVN--------------NF 140
P KS++ + + GTIK + DP +L FE + N
Sbjct: 73 PIHLKSNIELHVKGTIK-------FIPDPERYLPVVLTRFEGIELYNYSPLVYALDCENV 125
Query: 141 RVEGGGTIDG--NGKVWW-----------------RKSCKVNKSLA-------------- 167
+ G G +DG + + WW ++ K K +A
Sbjct: 126 AITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKG 185
Query: 168 -------VTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHV 220
V FY C+NV V ++ NS + NV N+ + + G PN DGI
Sbjct: 186 HYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISSTG--PNNDGIDP 243
Query: 221 TGTQNILIKNCVIRTGDDCISIVSGSKN-------------VRATDIICGPGH-GISIGS 266
+ +LI+ C TGDD + I SG VR +I H G+ IGS
Sbjct: 244 ESCKYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGS 303
Query: 267 LGAGNSEAFVSNVLVNRARLSGTTNGVRIKT 297
+G V NV+ +R+KT
Sbjct: 304 EMSGG----VRNVVARNNVYMNVERALRLKT 330
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 10/174 (5%)
Query: 132 LVFENVN-NFRVEGGGTIDGNGKVWW-RKSCKVNKSLAVTFYG--CKNVRVSSLRFRNSQ 187
+ F N N G +ID G WW K K+ FY K+ + L N+
Sbjct: 63 ISFSGTNININGASGHSIDCQGSRWWDSKGSNGGKTKPKFFYAHSLKSSNIKGLNVLNTP 122
Query: 188 KMHLTFQYCVNVRALNLLVI-APGNSP---NTDGIHVTGTQNILIKNCVIRTGDDCISIV 243
+ + ++++ + G+S NTD V + + I ++ DDC++I
Sbjct: 123 VQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAIN 182
Query: 244 SGSKNVRATDIICGPGHGISIGSLGAGNSEAFVSNVLVNRARLSGTTNGVRIKT 297
SG+ N+ T C GHG+SIGS+G G S+ V V ++ +++ + NGVRIKT
Sbjct: 183 SGT-NITFTGGTCSGGHGLSIGSVG-GRSDNTVKTVTISNSKIVNSDNGVRIKT 234
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
Resolution
pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With A Galacturonate At 1.00 A Resolution.
pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With Two Galacturonate At 1.15 A Resolution
Length = 335
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
Query: 214 NTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIGSLGAGNSE 273
NTDG V+ N+ I+NC+++ DDCI+I G+ N+R + C GHGISIGS+ G
Sbjct: 151 NTDGFDVS-ANNVTIQNCIVKNQDDCIAINDGN-NIRFENNQCSGGHGISIGSIATGK-- 206
Query: 274 AFVSNVLVNRARLSGTTNGVRIK 296
VSNV++ ++ + GVRIK
Sbjct: 207 -HVSNVVIKGNTVTRSMYGVRIK 228
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 30/176 (17%)
Query: 145 GGTIDGNGKVWWR-KSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQ----YCVNV 199
G IDGNG+ +W K N + + V NS+ +L Q +C ++
Sbjct: 78 GHVIDGNGQAYWDGKGSNSNSNQKPDHF-----IVVQKTTGNSKITNLNIQNWPVHCFDI 132
Query: 200 RALNLLVIA-------PGNSPN-----------TDGIHVTGTQNILIKNCVIRTGDDCIS 241
+ L I+ G+ PN TDG ++ + ++ + N + DDC++
Sbjct: 133 TGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQDDCVA 192
Query: 242 IVSGSKNVRATDIICGPGHGISIGSLGAGNSEAFVSNVLVNRARLSGTTNGVRIKT 297
+ SG+ N+ +++ C GHG+SIGS+G G S+ V V +++ + NG RIK+
Sbjct: 193 VTSGT-NIVVSNMYCSGGHGLSIGSVG-GKSDNVVDGVQFLSSQVVNSQNGCRIKS 246
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 11/160 (6%)
Query: 145 GGTIDGNGKVWWRKSCKVNKSLAVTFY--GCKNVRVSSLRFRNSQKMHLTFQYCVNVRAL 202
G I+ +G WW K FY G + ++ L +N+ M + Q N
Sbjct: 104 GHLINCDGARWWDGKGTSGKKKPKFFYAHGLDSSSITGLNIKNTPLMAFSVQ--ANDITF 161
Query: 203 NLLVI--APGNSP---NTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICG 257
+ I A G++ NTD V + + I + DDC+++ SG +N+ T C
Sbjct: 162 TDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSG-ENIWFTGGTCI 220
Query: 258 PGHGISIGSLGAGNSEAFVSNVLVNRARLSGTTNGVRIKT 297
GHG+SIGS+G S V NV + + +S + N VRIKT
Sbjct: 221 GGHGLSIGSVGD-RSNNVVKNVTIEHSTVSNSENAVRIKT 259
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 71/163 (43%), Gaps = 15/163 (9%)
Query: 145 GGTIDGNGKVWWRKSCKVNKSLAVTFYGCK---NVRVSSLRFRNSQKMHLTFQYCVNVRA 201
G +I+G+G WW F+ N +S L+ NS +
Sbjct: 81 GHSINGDGSRWWDGEGGNGGKTKPKFFAAHSLTNSVISGLKIVNSPVQVFSVA---GSDY 137
Query: 202 LNLLVIAPGNSP-------NTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDI 254
L L I NS NTD + + + I + DDC+++ SG +N+ +
Sbjct: 138 LTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSG-ENIYFSGG 196
Query: 255 ICGPGHGISIGSLGAGNSEAFVSNVLVNRARLSGTTNGVRIKT 297
C GHG+SIGS+G G S+ V NV + + + NGVRIKT
Sbjct: 197 YCSGGHGLSIGSVG-GRSDNTVKNVTFVDSTIINSDNGVRIKT 238
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 17/227 (7%)
Query: 46 STKIVNVDDFEAKAD-GTDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCK 104
+TK N+ + A AD TD A AW AC S ++ +P+ +T +G
Sbjct: 17 ATKTCNILSYGAVADNSTDVGPAITSAWA-ACKSG--GLVYIPSGNYALNTWVTLTGGSA 73
Query: 105 SDLTMK--IYGTIKASVRLSDYSRDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCKV 162
+ + + IY T AS + + D + +F + + G + G G V+ +
Sbjct: 74 TAIQLDGIIYRTGTASGNMIAVT-DTTDFELFSSTSK------GAVQGFGYVYHAEGTYG 126
Query: 163 NKSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVTG 222
+ L +T + V + ++ H T C + N+ I GN DGI V G
Sbjct: 127 ARILRLT--DVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNM-AIRGGNEGGLDGIDVWG 183
Query: 223 TQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIGSLGA 269
+ NI + + + D+C+++ S + N+ I C G ++GSLGA
Sbjct: 184 S-NIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA 229
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 105/278 (37%), Gaps = 92/278 (33%)
Query: 44 ASSTKIVNVDDFEAKADG-TDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPITFSGP 102
++ +IVNV DF A DG T ++KA +A + +C P ++ SG
Sbjct: 151 SAKPQIVNVRDFGAIDDGKTLNTKAIQQAID-SCK---------PGCRVEIPAGTYKSGA 200
Query: 103 C--KSDLTMKIY-GTI----------KASVRLSDYSRDPRHWLVFENVN----------N 139
KSD+T+ + G I A RL YS R + ++ N
Sbjct: 201 LWLKSDMTLNLQAGAILLGSENPDDYPAGYRLYPYSTIERPASLINAIDPNNSKPGTFRN 260
Query: 140 FRVEGGGTIDGNGKVWWR--------------------KSCKVN---------------- 163
R+ G G IDGNG W R K+ KV+
Sbjct: 261 IRITGSGVIDGNG--WLRAKTAEITDELGRSLPQYVASKNSKVHEDGILAKNQVEKAVSD 318
Query: 164 -----------KSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNL----LVIA 208
+S +T G +NV ++ RN F +N+ N+ L+
Sbjct: 319 GMDLKNAYGQRRSSLMTLRGVENVYLAGFTVRNP-----AFHGIMNLENHNVVANGLIHQ 373
Query: 209 PGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGS 246
++ N DGI +QN+++ N TGDDCI+ +G+
Sbjct: 374 TYDANNGDGIEFGNSQNVMVFNNFFDTGDDCINFAAGT 411
>pdb|1H80|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1H80|B Chain B, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1KTW|A Chain A, Iota-carrageenase Complexed To Iota-carrageenan Fragments
pdb|1KTW|B Chain B, Iota-carrageenase Complexed To Iota-carrageenan Fragments
Length = 464
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 105/252 (41%), Gaps = 34/252 (13%)
Query: 52 VDDFEAKA-DGTDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMK 110
VDDF A D +DDS A A N L++PN YH I KS++ ++
Sbjct: 25 VDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNG-TYHFLGIQM----KSNVHIR 79
Query: 111 IYGTIKASVRLSDYSRDPRHWLVFEN--VNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAV 168
+ + + ++ R + V N V NF +G GNG + K + +K+LAV
Sbjct: 80 VESDVIIKPTWNGDGKNHRLFEVGVNNIVRNFSFQGL----GNGFLVDFKDSR-DKNLAV 134
Query: 169 TFYG-CKNVRVSSLRFRNSQKMHLTFQYCVNVR------ALNLLV--IAPGNSPNTDG-I 218
G +N ++S+ +++ + + V R + N ++ I N+ G I
Sbjct: 135 FKLGDVRNYKISNFTIDDNKTIFASILVDVTERNGRLHWSRNGIIERIKQNNALFGYGLI 194
Query: 219 HVTGTQNILIKNC------VIRTGDDCISIVS----GSKNVRATDIICGPG-HGISIGSL 267
G NIL +N +R D + + + G +N+ A +I C G + G
Sbjct: 195 QTYGADNILFRNLHSEGGIALRMETDNLLMKNYKQGGIRNIFADNIRCSKGLAAVMFGPH 254
Query: 268 GAGNSEAFVSNV 279
N + V+NV
Sbjct: 255 FMKNGDVQVTNV 266
>pdb|3LMW|A Chain A, Crystal Structure Of Iota-Carrageenase Family Gh82 From A.
Fortis In Absence Of Chloride Ions
pdb|3LMW|B Chain B, Crystal Structure Of Iota-Carrageenase Family Gh82 From A.
Fortis In Absence Of Chloride Ions
Length = 473
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 105/252 (41%), Gaps = 34/252 (13%)
Query: 52 VDDFEAKA-DGTDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMK 110
VDDF A D +DDS A A N L++PN YH I KS++ ++
Sbjct: 26 VDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNG-TYHFLGIQM----KSNVHIR 80
Query: 111 IYGTIKASVRLSDYSRDPRHWLVFEN--VNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAV 168
+ + + ++ R + V N V NF +G GNG + K + +K+LAV
Sbjct: 81 VESDVIIKPTWNGDGKNHRLFEVGVNNIVRNFSFQGL----GNGFLVDFKDSR-DKNLAV 135
Query: 169 TFYG-CKNVRVSSLRFRNSQKMHLTFQYCVNVR------ALNLLV--IAPGNSPNTDG-I 218
G +N ++S+ +++ + + V R + N ++ I N+ G I
Sbjct: 136 FKLGDVRNYKISNFTIDDNKTIFASILVDVTERNGRLHWSRNGIIERIKQNNALFGYGLI 195
Query: 219 HVTGTQNILIKNC------VIRTGDDCISIVS----GSKNVRATDIICGPG-HGISIGSL 267
G NIL +N +R D + + + G +N+ A +I C G + G
Sbjct: 196 QTYGADNILFRNLHSEGGIALRMETDNLLMKNYKQGGIRNIFADNIRCSKGLAAVMFGPH 255
Query: 268 GAGNSEAFVSNV 279
N + V+NV
Sbjct: 256 FMKNGDVQVTNV 267
>pdb|1PQU|A Chain A, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
pdb|1PQU|B Chain B, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
pdb|1PQU|C Chain C, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
pdb|1PQU|D Chain D, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
Length = 371
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 69 MEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASV-RLSDYSRD 127
+E E+ +S NE V V+PN+K L+ +T + K+ GT+ V RL +
Sbjct: 291 LEEIEQIIASHNEWVKVIPNDKEITLRELTPA---------KVTGTLSVPVGRLRKLAMG 341
Query: 128 PRHWLVF 134
P + F
Sbjct: 342 PEYLAAF 348
>pdb|1PU2|A Chain A, Crystal Structure Of The K246r Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Length = 371
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 69 MEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASV-RLSDYSRD 127
+E E+ +S NE V V+PN+K L+ +T + K+ GT+ V RL +
Sbjct: 291 LEEIEQIIASHNEWVKVIPNDKEITLRELTPA---------KVTGTLSVPVGRLRKLAMG 341
Query: 128 PRHWLVF 134
P + F
Sbjct: 342 PEYLAAF 348
>pdb|1NWH|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Haemophilus Influenzae As A Tetrahedral
Hemithioacetal Reaction Intermediate At 2.0 A
pdb|1NWH|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Haemophilus Influenzae As A Tetrahedral
Hemithioacetal Reaction Intermediate At 2.0 A
pdb|1NX6|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Haemophilus Influenzae As A Tetrahedral
Hemithiocetal Reaction Intermediate With Phosphate At
2.15 A
Length = 371
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 69 MEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASV-RLSDYSRD 127
+E E+ +S NE V V+PN+K L+ +T + K+ GT+ V RL +
Sbjct: 291 LEEIEQIIASHNEWVKVIPNDKEITLRELTPA---------KVTGTLSVPVGRLRKLAMG 341
Query: 128 PRHWLVF 134
P + F
Sbjct: 342 PEYLAAF 348
>pdb|1PQP|A Chain A, Crystal Structure Of The C136s Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Aspartate Semialdehyde And Phosphate
Length = 371
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 69 MEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASV-RLSDYSRD 127
+E E+ +S NE V V+PN+K L+ +T + K+ GT+ V RL +
Sbjct: 291 LEEIEQIIASHNEWVKVIPNDKEITLRELTPA---------KVTGTLSVPVGRLRKLAMG 341
Query: 128 PRHWLVF 134
P + F
Sbjct: 342 PEYLAAF 348
>pdb|1Q2X|A Chain A, Crystal Structure Of The E243d Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Substrate Aspartate Semialdehyde
pdb|1Q2X|B Chain B, Crystal Structure Of The E243d Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Substrate Aspartate Semialdehyde
Length = 371
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 69 MEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASV-RLSDYSRD 127
+E E+ +S NE V V+PN+K L+ +T + K+ GT+ V RL +
Sbjct: 291 LEEIEQIIASHNEWVKVIPNDKEITLRELTPA---------KVTGTLSVPVGRLRKLAMG 341
Query: 128 PRHWLVF 134
P + F
Sbjct: 342 PEYLAAF 348
>pdb|1OZA|A Chain A, Crystal Structure Of The R103l Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Length = 371
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 69 MEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASV-RLSDYSRD 127
+E E+ +S NE V V+PN+K L+ +T + K+ GT+ V RL +
Sbjct: 291 LEEIEQIIASHNEWVKVIPNDKEITLRELTPA---------KVTGTLSVPVGRLRKLAMG 341
Query: 128 PRHWLVF 134
P + F
Sbjct: 342 PEYLAAF 348
>pdb|1NWC|A Chain A, Crystal Structure Of Aspartate-Semialdehyde Dehydrogenase
From Haemophilus Influenzae
pdb|1NWC|B Chain B, Crystal Structure Of Aspartate-Semialdehyde Dehydrogenase
From Haemophilus Influenzae
pdb|1TA4|A Chain A, Crystal Structure Of Aspartate-Semialdehyde Dehydrogenase
From Haemophilus Influenzae With A Bound Arsenate
pdb|1TB4|A Chain A, Crystal Structure Of Aspartate-Semialdehyde Dehydrogenase
From Haemophilus Influenzae With A Bound Periodate
Length = 371
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 69 MEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASV-RLSDYSRD 127
+E E+ +S NE V V+PN+K L+ +T + K+ GT+ V RL +
Sbjct: 291 LEEIEQIIASHNEWVKVIPNDKEITLRELTPA---------KVTGTLSVPVGRLRKLAMG 341
Query: 128 PRHWLVF 134
P + F
Sbjct: 342 PEYLAAF 348
>pdb|1PR3|A Chain A, Crystal Structure Of The R103k Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Length = 371
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 69 MEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASV-RLSDYSRD 127
+E E+ +S NE V V+PN+K L+ +T + K+ GT+ V RL +
Sbjct: 291 LEEIEQIIASHNEWVKVIPNDKEITLRELTPA---------KVTGTLSVPVGRLRKLAMG 341
Query: 128 PRHWLVF 134
P + F
Sbjct: 342 PEYLAAF 348
>pdb|1PS8|A Chain A, Crystal Structure Of The R270k Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Length = 371
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 69 MEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASV-RLSDYSRD 127
+E E+ +S NE V V+PN+K L+ +T + K+ GT+ V RL +
Sbjct: 291 LEEIEQIIASHNEWVKVIPNDKEITLRELTPA---------KVTGTLSVPVGRLRKLAMG 341
Query: 128 PRHWLVF 134
P + F
Sbjct: 342 PEYLAAF 348
>pdb|3GZA|A Chain A, Crystal Structure Of Putative Alpha-L-Fucosidase
(Np_812709.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 1.60 A Resolution
pdb|3GZA|B Chain B, Crystal Structure Of Putative Alpha-L-Fucosidase
(Np_812709.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 1.60 A Resolution
Length = 443
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 131 WLVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYG 172
W ++NF+ EG G N + W+++ C+ + T YG
Sbjct: 133 WNSLLGIHNFKAEGEGAFARNRQAWYKRLCEKXVTELCTRYG 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,367,570
Number of Sequences: 62578
Number of extensions: 384343
Number of successful extensions: 825
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 30
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)