Query 043061
Match_columns 299
No_of_seqs 164 out of 1505
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 12:26:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043061.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043061hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02218 polygalacturonase ADP 100.0 1.4E-65 3E-70 483.7 31.7 257 42-299 60-326 (431)
2 PLN02793 Probable polygalactur 100.0 8.8E-65 1.9E-69 480.2 32.4 254 46-299 49-311 (443)
3 PLN02155 polygalacturonase 100.0 2.5E-63 5.4E-68 463.5 30.6 261 36-299 14-279 (394)
4 PLN03003 Probable polygalactur 100.0 2.7E-63 5.8E-68 467.1 29.6 251 46-299 20-272 (456)
5 PLN03010 polygalacturonase 100.0 4.5E-62 9.7E-67 456.1 30.5 247 44-299 41-291 (409)
6 PLN02188 polygalacturonase/gly 100.0 1.3E-60 2.8E-65 447.1 31.4 251 45-299 32-289 (404)
7 PF00295 Glyco_hydro_28: Glyco 100.0 1E-46 2.2E-51 347.3 21.2 221 76-299 1-226 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 1.1E-41 2.4E-46 324.9 24.4 244 44-298 77-378 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 1.8E-25 4E-30 207.6 22.5 196 39-257 27-281 (455)
10 PF12708 Pectate_lyase_3: Pect 99.9 8.2E-23 1.8E-27 177.9 21.7 213 49-294 1-225 (225)
11 PLN02793 Probable polygalactur 99.7 3.4E-15 7.4E-20 142.2 23.8 173 104-298 142-339 (443)
12 PLN03003 Probable polygalactur 99.7 2.1E-15 4.5E-20 143.0 21.8 171 104-296 112-298 (456)
13 PLN02188 polygalacturonase/gly 99.7 5.3E-15 1.2E-19 139.4 22.8 174 104-297 121-318 (404)
14 PLN02218 polygalacturonase ADP 99.7 6.8E-15 1.5E-19 139.6 20.9 172 104-297 155-353 (431)
15 TIGR03805 beta_helix_1 paralle 99.7 6.3E-15 1.4E-19 135.2 19.1 190 68-289 1-203 (314)
16 PLN02155 polygalacturonase 99.7 2.3E-14 5.1E-19 134.5 22.1 170 104-296 114-306 (394)
17 PLN03010 polygalacturonase 99.6 8.2E-14 1.8E-18 131.2 22.8 167 104-297 138-318 (409)
18 PF00295 Glyco_hydro_28: Glyco 99.6 2.4E-14 5.2E-19 132.2 18.8 171 105-297 60-253 (326)
19 PF03718 Glyco_hydro_49: Glyco 99.5 5.5E-13 1.2E-17 126.0 16.7 182 82-289 233-441 (582)
20 COG5434 PGU1 Endopygalactoruna 99.2 1.7E-10 3.7E-15 111.3 15.5 147 129-290 238-399 (542)
21 PF12541 DUF3737: Protein of u 99.0 4.7E-09 1E-13 91.5 11.7 80 192-294 151-230 (277)
22 TIGR03805 beta_helix_1 paralle 98.9 8.9E-08 1.9E-12 88.1 16.5 157 131-298 79-252 (314)
23 PF05048 NosD: Periplasmic cop 98.8 2E-07 4.3E-12 82.2 15.2 90 167-263 59-150 (236)
24 PF13229 Beta_helix: Right han 98.8 1.5E-07 3.2E-12 76.7 12.7 139 132-296 3-145 (158)
25 PF13229 Beta_helix: Right han 98.7 1.1E-07 2.3E-12 77.6 10.4 117 167-297 2-121 (158)
26 COG3866 PelB Pectate lyase [Ca 98.6 2.2E-06 4.8E-11 76.3 16.5 130 107-258 77-228 (345)
27 PF05048 NosD: Periplasmic cop 98.6 1.7E-06 3.6E-11 76.3 14.6 133 132-294 16-150 (236)
28 PF07602 DUF1565: Protein of u 98.6 7.2E-06 1.6E-10 72.3 17.6 163 65-264 15-194 (246)
29 smart00656 Amb_all Amb_all dom 98.5 1.5E-06 3.2E-11 74.3 11.8 99 168-288 34-143 (190)
30 PF00544 Pec_lyase_C: Pectate 98.4 1.9E-06 4E-11 74.3 10.5 76 213-289 73-158 (200)
31 TIGR03808 RR_plus_rpt_1 twin-a 98.4 5.3E-06 1.1E-10 78.3 13.6 77 167-243 108-209 (455)
32 PF14592 Chondroitinas_B: Chon 98.3 6.4E-05 1.4E-09 70.9 17.8 45 64-112 3-49 (425)
33 PF12541 DUF3737: Protein of u 98.2 9.2E-06 2E-10 71.2 9.2 105 169-291 93-208 (277)
34 smart00656 Amb_all Amb_all dom 98.1 0.00025 5.5E-09 60.5 15.9 157 95-289 10-189 (190)
35 PLN02480 Probable pectinestera 98.0 0.00044 9.6E-09 64.1 17.4 50 60-113 55-106 (343)
36 PLN02773 pectinesterase 98.0 0.0018 4E-08 59.4 20.6 130 47-210 4-143 (317)
37 PRK10531 acyl-CoA thioesterase 98.0 0.0014 3E-08 62.1 19.4 178 58-257 87-301 (422)
38 COG3420 NosD Nitrous oxidase a 97.9 0.00071 1.5E-08 61.5 16.3 113 136-256 75-190 (408)
39 PRK10123 wcaM putative colanic 97.8 0.00065 1.4E-08 60.5 14.2 208 41-290 26-259 (464)
40 PF00544 Pec_lyase_C: Pectate 97.8 0.00053 1.2E-08 59.0 12.4 87 171-257 43-156 (200)
41 PLN02416 probable pectinestera 97.8 0.0046 9.9E-08 60.8 20.3 152 60-257 237-396 (541)
42 PLN02713 Probable pectinestera 97.8 0.0048 1E-07 61.1 20.4 151 60-256 257-418 (566)
43 PLN02170 probable pectinestera 97.8 0.0084 1.8E-07 58.5 21.6 154 60-257 232-392 (529)
44 PLN02933 Probable pectinestera 97.7 0.007 1.5E-07 59.2 21.0 50 60-113 225-276 (530)
45 PLN02506 putative pectinestera 97.7 0.0041 8.9E-08 61.1 19.5 153 60-257 239-398 (537)
46 PF03718 Glyco_hydro_49: Glyco 97.7 0.0041 9E-08 60.0 18.7 194 82-296 257-497 (582)
47 PLN02682 pectinesterase family 97.7 0.0065 1.4E-07 56.8 19.6 50 60-113 77-128 (369)
48 PLN02665 pectinesterase family 97.7 0.0082 1.8E-07 56.2 20.1 57 48-113 68-126 (366)
49 PLN02671 pectinesterase 97.7 0.0082 1.8E-07 55.9 20.0 50 60-113 66-117 (359)
50 PLN02484 probable pectinestera 97.7 0.0055 1.2E-07 60.9 19.7 153 60-257 279-439 (587)
51 PLN02488 probable pectinestera 97.7 0.017 3.7E-07 56.0 22.4 149 60-257 204-363 (509)
52 PLN02468 putative pectinestera 97.7 0.0055 1.2E-07 60.7 19.3 151 60-256 265-423 (565)
53 PLN02745 Putative pectinestera 97.7 0.011 2.4E-07 58.8 21.3 181 60-289 292-487 (596)
54 PLN02197 pectinesterase 97.7 0.009 1.9E-07 59.3 20.5 184 60-289 282-480 (588)
55 PLN03043 Probable pectinestera 97.6 0.0099 2.2E-07 58.5 20.4 151 60-256 230-391 (538)
56 PLN02916 pectinesterase family 97.6 0.014 3.1E-07 56.7 21.0 151 60-256 194-355 (502)
57 PLN02432 putative pectinestera 97.6 0.014 3.1E-07 53.0 19.8 59 46-113 9-69 (293)
58 PLN02217 probable pectinestera 97.6 0.011 2.4E-07 59.4 20.7 152 60-257 257-416 (670)
59 PLN02634 probable pectinestera 97.6 0.0094 2E-07 55.5 18.1 50 60-113 63-114 (359)
60 PLN02708 Probable pectinestera 97.6 0.0098 2.1E-07 58.7 19.1 183 60-289 248-449 (553)
61 PLN02301 pectinesterase/pectin 97.5 0.01 2.3E-07 58.4 19.1 181 60-289 243-438 (548)
62 PLN02314 pectinesterase 97.5 0.013 2.8E-07 58.4 19.6 151 60-256 285-443 (586)
63 PF01095 Pectinesterase: Pecti 97.5 0.0045 9.8E-08 56.6 15.3 50 60-113 7-58 (298)
64 PLN02990 Probable pectinestera 97.5 0.032 6.9E-07 55.4 21.8 152 60-256 266-425 (572)
65 PLN02313 Pectinesterase/pectin 97.5 0.013 2.8E-07 58.3 18.8 183 60-289 282-477 (587)
66 PLN02995 Probable pectinestera 97.5 0.0069 1.5E-07 59.6 16.7 153 60-257 230-391 (539)
67 PLN02201 probable pectinestera 97.4 0.013 2.8E-07 57.3 18.0 152 60-257 213-372 (520)
68 PF12708 Pectate_lyase_3: Pect 97.4 0.0086 1.9E-07 51.6 15.1 105 176-297 94-206 (225)
69 PLN02497 probable pectinestera 97.4 0.028 6E-07 52.0 18.7 50 60-113 39-90 (331)
70 PLN02176 putative pectinestera 97.4 0.02 4.3E-07 53.1 17.7 50 60-113 46-97 (340)
71 PLN02304 probable pectinestera 97.4 0.01 2.2E-07 55.6 15.7 50 60-113 82-133 (379)
72 PF01696 Adeno_E1B_55K: Adenov 97.3 0.046 1E-06 51.2 18.8 170 51-259 45-220 (386)
73 PF12218 End_N_terminal: N ter 97.0 0.00076 1.6E-08 45.7 3.1 37 57-97 1-38 (67)
74 COG3866 PelB Pectate lyase [Ca 96.8 0.025 5.5E-07 50.9 11.9 122 168-289 95-229 (345)
75 COG4677 PemB Pectin methyleste 96.6 0.07 1.5E-06 48.6 13.1 64 45-112 71-140 (405)
76 COG3420 NosD Nitrous oxidase a 96.2 0.073 1.6E-06 48.7 11.2 36 247-290 272-308 (408)
77 PF01696 Adeno_E1B_55K: Adenov 95.9 1.2 2.5E-05 42.0 18.2 88 170-264 117-206 (386)
78 TIGR03804 para_beta_helix para 95.0 0.042 9.1E-07 34.9 3.9 39 191-234 2-40 (44)
79 PF07602 DUF1565: Protein of u 95.0 0.23 5E-06 44.0 9.7 98 190-295 90-194 (246)
80 TIGR03804 para_beta_helix para 94.8 0.038 8.3E-07 35.1 3.3 40 217-257 1-40 (44)
81 PF08480 Disaggr_assoc: Disagg 92.2 6.1 0.00013 33.4 12.7 114 174-292 2-146 (198)
82 PF03211 Pectate_lyase: Pectat 91.2 1.9 4.1E-05 37.4 9.1 111 167-286 56-168 (215)
83 PF03211 Pectate_lyase: Pectat 88.7 15 0.00033 31.9 14.2 110 167-283 77-194 (215)
84 PLN02773 pectinesterase 85.7 12 0.00027 34.5 11.1 96 192-290 97-213 (317)
85 PRK09752 adhesin; Provisional 85.0 38 0.00083 36.6 15.4 119 167-288 114-265 (1250)
86 PLN02480 Probable pectinestera 84.6 20 0.00042 33.6 12.0 139 138-289 89-252 (343)
87 PLN02698 Probable pectinestera 82.7 32 0.0007 33.8 13.2 81 168-257 264-349 (497)
88 PF14592 Chondroitinas_B: Chon 81.7 18 0.00039 34.7 10.6 114 174-295 199-328 (425)
89 PF08480 Disaggr_assoc: Disagg 80.7 20 0.00043 30.4 9.3 90 197-290 2-110 (198)
90 smart00710 PbH1 Parallel beta- 79.8 2 4.2E-05 22.9 2.3 20 278-297 3-23 (26)
91 PF01095 Pectinesterase: Pecti 76.3 17 0.00036 33.3 8.5 112 168-289 81-202 (298)
92 PLN02506 putative pectinestera 75.0 28 0.0006 34.6 10.1 65 192-258 314-379 (537)
93 PLN02708 Probable pectinestera 74.6 33 0.00071 34.3 10.6 70 194-265 327-397 (553)
94 KOG1777 Putative Zn-finger pro 73.8 88 0.0019 30.2 12.5 27 81-112 48-74 (625)
95 PRK10123 wcaM putative colanic 73.2 11 0.00024 34.2 6.2 107 173-287 245-372 (464)
96 PLN02713 Probable pectinestera 72.5 39 0.00084 33.9 10.5 63 194-258 337-400 (566)
97 smart00722 CASH Domain present 71.7 36 0.00077 26.4 8.6 13 173-185 44-56 (146)
98 PLN02301 pectinesterase/pectin 71.5 38 0.00082 33.8 10.1 65 194-260 320-385 (548)
99 PLN02933 Probable pectinestera 71.0 36 0.00077 33.8 9.8 114 167-290 298-421 (530)
100 PLN02197 pectinesterase 70.6 36 0.00078 34.2 9.8 64 194-259 361-425 (588)
101 PLN02170 probable pectinestera 70.3 49 0.0011 32.8 10.5 66 191-258 307-373 (529)
102 smart00722 CASH Domain present 70.2 16 0.00034 28.4 6.2 69 171-242 73-145 (146)
103 PLN02416 probable pectinestera 69.1 41 0.00089 33.5 9.8 64 193-258 313-377 (541)
104 PLN02698 Probable pectinestera 68.8 39 0.00084 33.3 9.5 64 193-258 266-330 (497)
105 PLN02916 pectinesterase family 68.8 58 0.0013 32.1 10.6 96 193-290 273-393 (502)
106 PLN03043 Probable pectinestera 68.6 50 0.0011 32.9 10.3 64 193-258 309-373 (538)
107 PLN02201 probable pectinestera 68.3 65 0.0014 31.9 10.9 64 193-258 289-353 (520)
108 PLN02468 putative pectinestera 67.3 52 0.0011 33.0 10.2 63 194-258 342-405 (565)
109 PLN02314 pectinesterase 67.1 50 0.0011 33.3 10.1 96 193-290 361-481 (586)
110 PLN02313 Pectinesterase/pectin 66.5 50 0.0011 33.3 9.9 65 194-260 359-424 (587)
111 PLN02682 pectinesterase family 66.3 83 0.0018 29.8 10.8 111 167-289 156-280 (369)
112 PLN02745 Putative pectinestera 65.1 64 0.0014 32.6 10.4 65 194-260 369-434 (596)
113 PRK10531 acyl-CoA thioesterase 65.1 74 0.0016 30.6 10.3 68 191-258 200-282 (422)
114 PLN02484 probable pectinestera 64.7 53 0.0012 33.1 9.7 96 193-290 356-476 (587)
115 PLN02995 Probable pectinestera 64.7 52 0.0011 32.8 9.6 95 194-290 309-428 (539)
116 PLN02488 probable pectinestera 64.2 81 0.0017 31.1 10.6 95 194-290 281-400 (509)
117 PLN02176 putative pectinestera 63.0 71 0.0015 29.8 9.6 110 168-289 116-246 (340)
118 PLN02990 Probable pectinestera 61.5 74 0.0016 32.0 10.0 95 194-290 344-463 (572)
119 PLN02217 probable pectinestera 61.5 53 0.0011 33.6 9.1 95 194-290 334-453 (670)
120 PLN02665 pectinesterase family 60.9 79 0.0017 29.9 9.6 114 167-290 147-273 (366)
121 PLN02304 probable pectinestera 60.2 1.3E+02 0.0027 28.6 10.8 114 167-289 155-287 (379)
122 PLN02671 pectinesterase 59.8 84 0.0018 29.6 9.5 111 167-289 147-270 (359)
123 PLN02432 putative pectinestera 58.4 1.3E+02 0.0029 27.4 10.4 111 167-289 87-205 (293)
124 PF09251 PhageP22-tail: Salmon 57.6 21 0.00045 34.2 5.0 26 67-99 19-47 (549)
125 PLN02634 probable pectinestera 57.0 1.2E+02 0.0025 28.7 10.0 111 167-289 142-266 (359)
126 PLN02497 probable pectinestera 51.6 1.6E+02 0.0034 27.5 9.8 111 167-289 108-239 (331)
127 PF11429 Colicin_D: Colicin D; 50.1 29 0.00063 25.9 3.9 37 53-94 10-48 (92)
128 PF10162 G8: G8 domain; Inter 40.4 1.1E+02 0.0023 23.9 6.1 54 81-149 12-65 (125)
129 PRK09752 adhesin; Provisional 40.3 5.5E+02 0.012 28.4 13.8 117 132-257 115-264 (1250)
130 PF09251 PhageP22-tail: Salmon 34.4 1.1E+02 0.0024 29.4 6.0 23 195-221 262-284 (549)
131 PF07986 TBCC: Tubulin binding 32.3 2.3E+02 0.0051 21.8 7.1 31 132-179 23-53 (120)
132 PHA00672 hypothetical protein 30.8 83 0.0018 24.9 3.9 29 82-116 50-78 (152)
133 PF05342 Peptidase_M26_N: M26 29.8 1E+02 0.0022 27.4 4.8 9 87-96 154-162 (250)
134 COG0336 TrmD tRNA-(guanine-N1) 27.5 54 0.0012 28.8 2.6 46 48-93 34-93 (240)
135 TIGR03119 one_C_fhcD formylmet 27.2 68 0.0015 28.9 3.2 35 60-97 241-280 (287)
136 PF02741 FTR_C: FTR, proximal 25.8 69 0.0015 26.0 2.7 33 62-97 109-143 (150)
137 PF05687 DUF822: Plant protein 23.6 84 0.0018 25.5 2.8 25 68-94 47-71 (150)
138 cd07986 LPLAT_ACT14924-like Ly 20.6 1.1E+02 0.0024 26.0 3.2 26 63-91 83-108 (210)
139 PF06249 EutQ: Ethanolamine ut 20.4 1.8E+02 0.0038 23.9 4.2 11 114-124 140-150 (152)
No 1
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=1.4e-65 Score=483.69 Aligned_cols=257 Identities=55% Similarity=0.965 Sum_probs=241.1
Q ss_pred CCCCCCeEEEeecCCCCCCC-cccHHHHHHHHHHHhhcCCccEEEecCCeeEEeeeeeeeCCCccceEEEEeeEEEEeec
Q 043061 42 APASSTKIVNVDDFEAKADG-TDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVR 120 (299)
Q Consensus 42 ~~~~~~~~~~v~d~Ga~gdg-~Ddt~Aiq~Ai~~a~~~~gg~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~l~~~~~ 120 (299)
.+..++++++|+||||+||| +|||+|||+||++||++.|+++|+||+|++|+++++.|+|||+++++|+++|+|+++.+
T Consensus 60 ~~~~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l~g~L~~s~d 139 (431)
T PLN02218 60 ASLRTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQIFGTLSASQK 139 (431)
T ss_pred cccCCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCCCcEEEECCCCeEEEeeeEecCccCCceEEEEEEEEEeCCC
Confidence 44567889999999999999 99999999999878988887899999997799999999999999999999999999999
Q ss_pred cCCCCCCCceeEEEeeeecEEEEec--eEEeCCCccccccccc-------CCCceeEEEEccCcEEEEeEEEEcCCCceE
Q 043061 121 LSDYSRDPRHWLVFENVNNFRVEGG--GTIDGNGKVWWRKSCK-------VNKSLAVTFYGCKNVRVSSLRFRNSQKMHL 191 (299)
Q Consensus 121 ~~~~~~~~~~~i~~~~~~ni~I~G~--G~idG~g~~~w~~~~~-------~~~~~~i~~~~~~nv~I~~v~i~ns~~~~i 191 (299)
+.+|+. ...|+.+.+++||+|+|. |+|||+|+.||...+. ..+|.+|.|.+|+|++|++++++|+|+|++
T Consensus 140 ~~~y~~-~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w~i 218 (431)
T PLN02218 140 RSDYKD-ISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQI 218 (431)
T ss_pred hhhccc-cccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCEEE
Confidence 998853 457999999999999996 9999999999987542 236779999999999999999999999999
Q ss_pred EEeceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcCCceEEEeecCCCC
Q 043061 192 TFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIGSLGAGN 271 (299)
Q Consensus 192 ~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~~~Gi~igs~~~~~ 271 (299)
++..|+||+|+|++|.+|.+++|+||||+++|+||+|+||+|.+|||||+|+++++||+|+||+|.++|||+|||+|.+.
T Consensus 219 ~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g~~~ 298 (431)
T PLN02218 219 SIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDDN 298 (431)
T ss_pred EEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CcccEEEEEEEeeEEeCCceeEEEEecC
Q 043061 272 SEAFVSNVLVNRARLSGTTNGVRIKTWQ 299 (299)
Q Consensus 272 ~~~~v~nv~i~n~~~~~~~~gi~ik~~~ 299 (299)
..+.|+||+|+||+|.++.+|+||||||
T Consensus 299 ~~~~V~nV~v~n~~~~~t~nGvRIKT~~ 326 (431)
T PLN02218 299 SKAFVSGVTVDGAKLSGTDNGVRIKTYQ 326 (431)
T ss_pred CCceEEEEEEEccEEecCCcceEEeecC
Confidence 7789999999999999999999999996
No 2
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=8.8e-65 Score=480.21 Aligned_cols=254 Identities=50% Similarity=0.915 Sum_probs=238.3
Q ss_pred CCeEEEeecCCCCCCC-cccHHHHHHHHHHHhhcCCccEEEecCCeeEEeeeeeeeCCCccceEEEEeeEEEEeeccCCC
Q 043061 46 STKIVNVDDFEAKADG-TDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDY 124 (299)
Q Consensus 46 ~~~~~~v~d~Ga~gdg-~Ddt~Aiq~Ai~~a~~~~gg~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~l~~~~~~~~~ 124 (299)
.+++++|+||||+||| +|||+|||+||++||++.|+++|+||+|++|++++|.|.|||+++++|+++|+|+++.++..|
T Consensus 49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~g~l~~~~d~~~w 128 (443)
T PLN02793 49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQISGTIIAPKDPDVW 128 (443)
T ss_pred CceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccCCCeEEEEEEEEEccCChHHc
Confidence 3479999999999999 999999999998789877779999999966999999999999999999999999999999999
Q ss_pred CC-CCceeEEEeeeecEEEEeceEEeCCCccccccccc-------CCCceeEEEEccCcEEEEeEEEEcCCCceEEEece
Q 043061 125 SR-DPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCK-------VNKSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQYC 196 (299)
Q Consensus 125 ~~-~~~~~i~~~~~~ni~I~G~G~idG~g~~~w~~~~~-------~~~~~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~s 196 (299)
+. ..+.|+++.+++||+|+|.|+|||+|+.||...+. ..+|.+|.|.+|+|++|++++++|+|+|++++..|
T Consensus 129 ~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~~~ 208 (443)
T PLN02793 129 KGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNC 208 (443)
T ss_pred cCCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEEEEcc
Confidence 64 34679999999999999999999999999976432 12577999999999999999999999999999999
Q ss_pred eeEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcCCceEEEeecCCCCCcccE
Q 043061 197 VNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIGSLGAGNSEAFV 276 (299)
Q Consensus 197 ~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~~~Gi~igs~~~~~~~~~v 276 (299)
+|++|+|++|.+|..++|+||||+.+|++|+|+||+|.+|||||+++++++||+|+||+|.++|||+|||+|.+.+...|
T Consensus 209 ~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~~V 288 (443)
T PLN02793 209 RRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSEV 288 (443)
T ss_pred CcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987767889
Q ss_pred EEEEEEeeEEeCCceeEEEEecC
Q 043061 277 SNVLVNRARLSGTTNGVRIKTWQ 299 (299)
Q Consensus 277 ~nv~i~n~~~~~~~~gi~ik~~~ 299 (299)
+||+|+||+|.++.+|+|||||+
T Consensus 289 ~nV~v~n~~~~~t~~GirIKt~~ 311 (443)
T PLN02793 289 RDITVDGAFLSNTDNGVRIKTWQ 311 (443)
T ss_pred EEEEEEccEEeCCCceEEEEEeC
Confidence 99999999999999999999996
No 3
>PLN02155 polygalacturonase
Probab=100.00 E-value=2.5e-63 Score=463.52 Aligned_cols=261 Identities=40% Similarity=0.720 Sum_probs=237.6
Q ss_pred hhcCCCCCCCCCeEEEeecCCCCCCC-cccHHHHHHHHHHHhhcCCccEEEecCCeeEEeeeeeeeCCCccceEEEEeeE
Q 043061 36 LYGRASAPASSTKIVNVDDFEAKADG-TDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGT 114 (299)
Q Consensus 36 ~~~~~~~~~~~~~~~~v~d~Ga~gdg-~Ddt~Aiq~Ai~~a~~~~gg~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~ 114 (299)
.+..+-....+++++||+||||+||| +|||+|||+||++||++.||++|+||+| +|++++|.|+|||||+++|+++|+
T Consensus 14 ~~~~~~~~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G-~yl~g~i~l~gpcksnv~l~l~G~ 92 (394)
T PLN02155 14 LLTFIDVSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTG-TFLLKVITFGGPCKSKITFQVAGT 92 (394)
T ss_pred HHHHhhccccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCC-cEEEEEEEEcccCCCCceEEEeeE
Confidence 34444455557789999999999999 9999999999976888877799999999 999999999999999999999999
Q ss_pred EEEeeccCCCCCCCceeEEEeeeecEEEEeceEEeCCCccccccccc----CCCceeEEEEccCcEEEEeEEEEcCCCce
Q 043061 115 IKASVRLSDYSRDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCK----VNKSLAVTFYGCKNVRVSSLRFRNSQKMH 190 (299)
Q Consensus 115 l~~~~~~~~~~~~~~~~i~~~~~~ni~I~G~G~idG~g~~~w~~~~~----~~~~~~i~~~~~~nv~I~~v~i~ns~~~~ 190 (299)
|+++.+...|.. ...|+.+.+++|+.|+| |+|||+|+.||..... ..++.+|.|.+|+|++|++++++|||.|+
T Consensus 93 l~~~~d~~~~~~-~~~wi~~~~~~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~ 170 (394)
T PLN02155 93 VVAPEDYRTFGN-SGYWILFNKVNRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSH 170 (394)
T ss_pred EECccccccccc-cceeEEEECcCCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCCeE
Confidence 998887766643 34699999999999999 9999999999975322 12345899999999999999999999999
Q ss_pred EEEeceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcCCceEEEeecCCC
Q 043061 191 LTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIGSLGAG 270 (299)
Q Consensus 191 i~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~~~Gi~igs~~~~ 270 (299)
+++..|++++|++++|.+|.+++|+||||+.+|++|+|+||+|.+|||||+++++++||+|+||+|.++|||+|||+|++
T Consensus 171 i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~ 250 (394)
T PLN02155 171 MTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKE 250 (394)
T ss_pred EEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCcccEEEEEEEeeEEeCCceeEEEEecC
Q 043061 271 NSEAFVSNVLVNRARLSGTTNGVRIKTWQ 299 (299)
Q Consensus 271 ~~~~~v~nv~i~n~~~~~~~~gi~ik~~~ 299 (299)
.+...|+||+|+||+|.++.+|+|||||+
T Consensus 251 ~~~~~V~nV~v~n~~~~~t~~GirIKT~~ 279 (394)
T PLN02155 251 LNEDGVENVTVSSSVFTGSQNGVRIKSWA 279 (394)
T ss_pred CCCCcEEEEEEEeeEEeCCCcEEEEEEec
Confidence 55678999999999999999999999995
No 4
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=2.7e-63 Score=467.10 Aligned_cols=251 Identities=42% Similarity=0.832 Sum_probs=234.6
Q ss_pred CCeEEEeecCCCCCCC-cccHHHHHHHHHHHhhcCCccEEEecCCeeEEeeeeeeeCCCccc-eEEEEeeEEEEeeccCC
Q 043061 46 STKIVNVDDFEAKADG-TDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSD-LTMKIYGTIKASVRLSD 123 (299)
Q Consensus 46 ~~~~~~v~d~Ga~gdg-~Ddt~Aiq~Ai~~a~~~~gg~~v~iP~G~~Y~~~~l~l~~p~~sn-vtl~~~g~l~~~~~~~~ 123 (299)
.+.++||++|||+||| +|||+|||+||++||++.++++|+||+|++|++++|.|+|||++. ++++++|+++++.. ..
T Consensus 20 ~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~~-~~ 98 (456)
T PLN03003 20 SSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSK-GN 98 (456)
T ss_pred eeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhccCCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCcc-cc
Confidence 4678999999999999 999999999998879877778999999977999999999999885 88889999998764 45
Q ss_pred CCCCCceeEEEeeeecEEEEeceEEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCceEEEeceeeEEEEe
Q 043061 124 YSRDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALN 203 (299)
Q Consensus 124 ~~~~~~~~i~~~~~~ni~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~s~nv~i~~ 203 (299)
|......||.|.+++|++|+|.|+|||+|+.||... ..+|.++.|.+|+|++|++++++|+|+|++++..|++++|++
T Consensus 99 w~~~~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~--~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~c~nV~i~~ 176 (456)
T PLN03003 99 WKGDKDQWILFTDIEGLVIEGDGEINGQGSSWWEHK--GSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISS 176 (456)
T ss_pred ccCCCcceEEEEcccceEEeccceEeCCchhhhhcc--cCCceEEEEEecCCcEEeCeEEecCCcEEEEEeccccEEEEE
Confidence 765567899999999999999999999999999753 356779999999999999999999999999999999999999
Q ss_pred EEEECCCCCCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcCCceEEEeecCCCCCcccEEEEEEEe
Q 043061 204 LLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIGSLGAGNSEAFVSNVLVNR 283 (299)
Q Consensus 204 ~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~~~Gi~igs~~~~~~~~~v~nv~i~n 283 (299)
++|.+|.+++|+||||+++|++|+|+||.|.+|||||+|+++++||+|+||+|.++|||+|||+|++++.+.|+||+|+|
T Consensus 177 l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~v~n 256 (456)
T PLN03003 177 LRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQN 256 (456)
T ss_pred EEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeeccCCCCcceEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999988788999999999
Q ss_pred eEEeCCceeEEEEecC
Q 043061 284 ARLSGTTNGVRIKTWQ 299 (299)
Q Consensus 284 ~~~~~~~~gi~ik~~~ 299 (299)
|+|.++.+|+|||||+
T Consensus 257 ~~~~~T~nGvRIKT~~ 272 (456)
T PLN03003 257 CNFRGTMNGARIKTWQ 272 (456)
T ss_pred eEEECCCcEEEEEEeC
Confidence 9999999999999996
No 5
>PLN03010 polygalacturonase
Probab=100.00 E-value=4.5e-62 Score=456.08 Aligned_cols=247 Identities=43% Similarity=0.793 Sum_probs=231.5
Q ss_pred CCCCeEEEeecCCCCCCC-cccHHHHHHHHHHHhhcCC-ccEEEecCCeeEEeeeeeeeCCCc-cceEEEEeeEEEEeec
Q 043061 44 ASSTKIVNVDDFEAKADG-TDDSKAFMEAWEEACSSEN-EAVLVVPNNKIYHLKPITFSGPCK-SDLTMKIYGTIKASVR 120 (299)
Q Consensus 44 ~~~~~~~~v~d~Ga~gdg-~Ddt~Aiq~Ai~~a~~~~g-g~~v~iP~G~~Y~~~~l~l~~p~~-snvtl~~~g~l~~~~~ 120 (299)
..+++++||+||||+||| +|||+|||+||++||..+| +++|+||+|++|+++||.|++||+ ++++|+++|+|+++.+
T Consensus 41 ~~~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d 120 (409)
T PLN03010 41 LVNGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSN 120 (409)
T ss_pred cCCCcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCC
Confidence 346789999999999999 9999999999986775432 269999999779999999999997 5799999999999999
Q ss_pred cCCCCC-CCceeEEEeeeecEEEEeceEEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCceEEEeceeeE
Q 043061 121 LSDYSR-DPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNV 199 (299)
Q Consensus 121 ~~~~~~-~~~~~i~~~~~~ni~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~s~nv 199 (299)
+..|+. ....|+.|.+++|++|+|.|+|||+|+.||. +++|.+|+|++|++++++|+|+|++++..|+++
T Consensus 121 ~~~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~---------~l~~~~~~nv~v~gitl~nsp~~~i~i~~~~nv 191 (409)
T PLN03010 121 IVAWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE---------ALHISKCDNLTINGITSIDSPKNHISIKTCNYV 191 (409)
T ss_pred hhhccCCCCcceEEEecccccEEeeceEEeCCCccccc---------eEEEEeecCeEEeeeEEEcCCceEEEEeccccE
Confidence 999964 2457999999999999999999999999996 599999999999999999999999999999999
Q ss_pred EEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcCCceEEEeecCCCCCcccEEEE
Q 043061 200 RALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIGSLGAGNSEAFVSNV 279 (299)
Q Consensus 200 ~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~~~Gi~igs~~~~~~~~~v~nv 279 (299)
+|+|++|.+|..++|+||||+..|++|+|+||+|.+|||||+++++++++.|+++.|.++|||+|||+|++++.+.|+||
T Consensus 192 ~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV 271 (409)
T PLN03010 192 AISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANAKVSDV 271 (409)
T ss_pred EEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCCCCeeEEE
Confidence 99999999999899999999999999999999999999999999999999999999999999999999998888899999
Q ss_pred EEEeeEEeCCceeEEEEecC
Q 043061 280 LVNRARLSGTTNGVRIKTWQ 299 (299)
Q Consensus 280 ~i~n~~~~~~~~gi~ik~~~ 299 (299)
+|+||+|.++.+|+|||||+
T Consensus 272 ~v~n~~i~~t~~GirIKt~~ 291 (409)
T PLN03010 272 HVTHCTFNQTTNGARIKTWQ 291 (409)
T ss_pred EEEeeEEeCCCcceEEEEec
Confidence 99999999999999999996
No 6
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=1.3e-60 Score=447.12 Aligned_cols=251 Identities=42% Similarity=0.740 Sum_probs=229.8
Q ss_pred CCCeEEEeecCCCCCCC-cccHHHHHHHHHHHhhcCCccEEEecCCeeEEeeeeeeeCCCccceEEEEeeEEEEeeccCC
Q 043061 45 SSTKIVNVDDFEAKADG-TDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSD 123 (299)
Q Consensus 45 ~~~~~~~v~d~Ga~gdg-~Ddt~Aiq~Ai~~a~~~~gg~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~l~~~~~~~~ 123 (299)
....++||+||||+||| +|||+|||+||++||++.|+++|+||+| +|+++++.|+|||++...|.+ +|+++.++++
T Consensus 32 ~~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~Ggg~V~vP~G-~yl~g~i~lkgpc~~~s~v~l--~L~~s~d~~~ 108 (404)
T PLN02188 32 SSTFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPG-TYYIGPVQFHGPCTNVSSLTF--TLKAATDLSR 108 (404)
T ss_pred CCceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCCCeEEEECCC-eEEEEeEEeCCCcCcceeEEE--EEEcCCCHHH
Confidence 35679999999999999 9999999999987898888889999999 999999999999976544444 8999999999
Q ss_pred CCCCCceeEEEeeeecEEEEeceEEeCCCcccccccc------cCCCceeEEEEccCcEEEEeEEEEcCCCceEEEecee
Q 043061 124 YSRDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSC------KVNKSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQYCV 197 (299)
Q Consensus 124 ~~~~~~~~i~~~~~~ni~I~G~G~idG~g~~~w~~~~------~~~~~~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~s~ 197 (299)
|+. ...|+.+..++||+|+|.|+|||+|+.||+... ...+|.+|.|.+|+|++|++++++|+|+|++++..|+
T Consensus 109 y~~-~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~w~i~~~~~~ 187 (404)
T PLN02188 109 YGS-GNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVECR 187 (404)
T ss_pred CCC-ccceEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCCeEEEEEccc
Confidence 964 356899999999999999999999999996431 1235779999999999999999999999999999999
Q ss_pred eEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcCCceEEEeecCCCCCcccEE
Q 043061 198 NVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIGSLGAGNSEAFVS 277 (299)
Q Consensus 198 nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~~~Gi~igs~~~~~~~~~v~ 277 (299)
+++|++++|.+|.+++|+||||+++|++|+|+||+|.+|||||+++++++||+|+|+.|.++|||+|||+|++.+...|+
T Consensus 188 ~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~~~~V~ 267 (404)
T PLN02188 188 NFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDVT 267 (404)
T ss_pred cEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCcCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988765567799
Q ss_pred EEEEEeeEEeCCceeEEEEecC
Q 043061 278 NVLVNRARLSGTTNGVRIKTWQ 299 (299)
Q Consensus 278 nv~i~n~~~~~~~~gi~ik~~~ 299 (299)
||+|+||+|.++.+|+|||||+
T Consensus 268 nV~v~n~~~~~t~~GiriKt~~ 289 (404)
T PLN02188 268 GLVVRDCTFTGTTNGIRIKTWA 289 (404)
T ss_pred EEEEEeeEEECCCcEEEEEEec
Confidence 9999999999999999999995
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=1e-46 Score=347.34 Aligned_cols=221 Identities=40% Similarity=0.696 Sum_probs=195.9
Q ss_pred hhcCCccEEEecCCeeEEeeeeeeeCCCccceEEEEeeEEEEeeccCCCCCCCceeEEEeeeecEEEEeceEEeCCCccc
Q 043061 76 CSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENVNNFRVEGGGTIDGNGKVW 155 (299)
Q Consensus 76 ~~~~gg~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~l~~~~~~~~~~~~~~~~i~~~~~~ni~I~G~G~idG~g~~~ 155 (299)
|++.++++|+||+| +|+++++.|++++.+++++.++|++.++.....++. ..||++.+++|++|+|.|+|||+|+.|
T Consensus 1 C~~~~~~~v~vP~g-~~~~~~~~l~~~l~~~~~~~l~G~~~~~~~~~~~~~--~~~i~~~~~~ni~i~G~G~IDG~G~~w 77 (326)
T PF00295_consen 1 CSSIGGGTVVVPAG-TYLLGPLFLKSTLHSDVGLTLDGTINFSYDNWEGPN--SALIYAENAENITITGKGTIDGNGQAW 77 (326)
T ss_dssp HSEEEEESEEESTS-TEEEEETSEETECETTCEEEEESEEEEG-EESTSE---SEEEEEESEEEEECTTSSEEE--GGGT
T ss_pred CcCCcCCEEEECCC-CeEEceeEEEcccCCCeEEEEEEEEEeCCCcccCCc--cEEEEEEceEEEEecCCceEcCchhhh
Confidence 44556679999999 999999999766668999999999999866555532 789999999999999999999999999
Q ss_pred cccccc-----CCCceeEEEEccCcEEEEeEEEEcCCCceEEEeceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEe
Q 043061 156 WRKSCK-----VNKSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKN 230 (299)
Q Consensus 156 w~~~~~-----~~~~~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n 230 (299)
|+..+. ..+|.+|.|..|+|++|++++++|+|+|++++..|+|++|++++|.++...+|+|||++.+|++|+|+|
T Consensus 78 ~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n 157 (326)
T PF00295_consen 78 WDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIEN 157 (326)
T ss_dssp CSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEES
T ss_pred hccccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEE
Confidence 987654 456789999999999999999999999999999999999999999998888999999999999999999
Q ss_pred eEEEcCCccEEecCCcEeEEEEeeEEcCCceEEEeecCCCCCcccEEEEEEEeeEEeCCceeEEEEecC
Q 043061 231 CVIRTGDDCISIVSGSKNVRATDIICGPGHGISIGSLGAGNSEAFVSNVLVNRARLSGTTNGVRIKTWQ 299 (299)
Q Consensus 231 ~~i~~gDD~iai~sgs~ni~I~n~~~~~~~Gi~igs~~~~~~~~~v~nv~i~n~~~~~~~~gi~ik~~~ 299 (299)
|.+.++||||++++++.||+|+||+|.++|||+|||++.++....|+||+|+||+|.++.+|+|||||+
T Consensus 158 ~~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~ 226 (326)
T PF00295_consen 158 CFIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWP 226 (326)
T ss_dssp EEEESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEET
T ss_pred eecccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEec
Confidence 999999999999999999999999999999999999998876678999999999999999999999995
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.1e-41 Score=324.88 Aligned_cols=244 Identities=34% Similarity=0.533 Sum_probs=210.1
Q ss_pred CCCCeEEEeecCCCCCCC-cccHHHHHHHHHHHhhcCCccEEEecCCeeEEeeeeeeeCCCccceEEEEe-e-EEEEeec
Q 043061 44 ASSTKIVNVDDFEAKADG-TDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIY-G-TIKASVR 120 (299)
Q Consensus 44 ~~~~~~~~v~d~Ga~gdg-~Ddt~Aiq~Ai~~a~~~~gg~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~-g-~l~~~~~ 120 (299)
.+....++|.+|||+||| +++++|||+||+ +|++.+|++|+||+| +|+.++|.| ||+++|+++ | +|.++.+
T Consensus 77 ~~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~-~ca~a~Gg~V~lPaG-tylsg~l~L----KS~~~L~l~egatl~~~~~ 150 (542)
T COG5434 77 AATDTAFSVSDDGAVGDGATDNTAAIQAAID-ACASAGGGTVLLPAG-TYLSGPLFL----KSNVTLHLAEGATLLASSN 150 (542)
T ss_pred ccccceeeeccccccccCCccCHHHHHHHHH-hhhhhcCceEEECCc-eeEeeeEEE----ecccEEEecCCceeeCCCC
Confidence 356779999999999999 999999999995 677667789999999 999999999 999999995 5 9999999
Q ss_pred cCCCCC-------CCce----------eEEE-------------eeeecEE-EEeceEEeCCC----cccccccc----c
Q 043061 121 LSDYSR-------DPRH----------WLVF-------------ENVNNFR-VEGGGTIDGNG----KVWWRKSC----K 161 (299)
Q Consensus 121 ~~~~~~-------~~~~----------~i~~-------------~~~~ni~-I~G~G~idG~g----~~~w~~~~----~ 161 (299)
+.+|+. ...+ .+.. -..+|.. |.|.|+++|++ ..||.... .
T Consensus 151 p~~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~~~~~ 230 (542)
T COG5434 151 PKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAVETR 230 (542)
T ss_pred hhhccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccchhhc
Confidence 999873 0111 1211 1234444 78888999964 22664443 1
Q ss_pred --C--CCceeEEEEccCcEEEEeEEEEcCCCceEEEeceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEcCC
Q 043061 162 --V--NKSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGD 237 (299)
Q Consensus 162 --~--~~~~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~gD 237 (299)
. .++..+.+..|.||++++++|.+++.|.++++.|++++++|++|.++... |+|||++.+|+||+|++|+|.+||
T Consensus 231 i~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgD 309 (542)
T COG5434 231 IGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGD 309 (542)
T ss_pred ccccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecCC
Confidence 2 36679999999999999999999999999999999999999999998766 999999999999999999999999
Q ss_pred ccEEecCC-----------cEeEEEEeeEEcCCce-EEEeecCCCCCcccEEEEEEEeeEEeCCceeEEEEec
Q 043061 238 DCISIVSG-----------SKNVRATDIICGPGHG-ISIGSLGAGNSEAFVSNVLVNRARLSGTTNGVRIKTW 298 (299)
Q Consensus 238 D~iai~sg-----------s~ni~I~n~~~~~~~G-i~igs~~~~~~~~~v~nv~i~n~~~~~~~~gi~ik~~ 298 (299)
|||+++++ +++|.|+||++..+|| +.+|||+.++ |+||+++||.|.++.+|+||||-
T Consensus 310 D~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~gg----v~ni~ved~~~~~~d~GLRikt~ 378 (542)
T COG5434 310 DCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGG----VQNITVEDCVMDNTDRGLRIKTN 378 (542)
T ss_pred ceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCc----eeEEEEEeeeeccCcceeeeeee
Confidence 99999997 4899999999999994 8889999876 99999999999999999999984
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.94 E-value=1.8e-25 Score=207.59 Aligned_cols=196 Identities=17% Similarity=0.248 Sum_probs=157.6
Q ss_pred CCCCCCCCCeEEEeecCCCCCCC-cccHHHHHHHHHHHhhcCCccEEEecCCeeEEeeeeeeeCCCccceEEEEe-eEE-
Q 043061 39 RASAPASSTKIVNVDDFEAKADG-TDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIY-GTI- 115 (299)
Q Consensus 39 ~~~~~~~~~~~~~v~d~Ga~gdg-~Ddt~Aiq~Ai~~a~~~~gg~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~-g~l- 115 (299)
..++|.++.+.+++.+|||++|| +|+|+|||+||+ +|++++ .+|.+|+| +|+.++|.| +++++|.+. +..
T Consensus 27 ~~~~p~~p~r~~dv~~fGa~~dG~td~T~ALQaAId-aAa~gG-~tV~Lp~G-~Y~~G~L~L----~spltL~G~~gAt~ 99 (455)
T TIGR03808 27 ARAAPLTSTLGRDATQYGVRPNSPDDQTRALQRAID-EAARAQ-TPLALPPG-VYRTGPLRL----PSGAQLIGVRGATR 99 (455)
T ss_pred hhccCCCCccCCCHHHcCcCCCCcchHHHHHHHHHH-HhhcCC-CEEEECCC-ceecccEEE----CCCcEEEecCCcEE
Confidence 34455677888999999999999 999999999996 455444 69999999 999999999 899999987 321
Q ss_pred -EEeeccCCCCCCCceeEEEeeeecEEEEeceEEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCceEEEe
Q 043061 116 -KASVRLSDYSRDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQ 194 (299)
Q Consensus 116 -~~~~~~~~~~~~~~~~i~~~~~~ni~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~~i~~~ 194 (299)
.... ....+...+.++|+|+|- +|+|.|..|. .++.+|++..|++++|++++|+++..|+|.+.
T Consensus 100 ~vIdG--------~~~lIiai~A~nVTIsGL-tIdGsG~dl~------~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~ 164 (455)
T TIGR03808 100 LVFTG--------GPSLLSSEGADGIGLSGL-TLDGGGIPLP------QRRGLIHCQGGRDVRITDCEITGSGGNGIWLE 164 (455)
T ss_pred EEEcC--------CceEEEEecCCCeEEEee-EEEeCCCccc------CCCCEEEEccCCceEEEeeEEEcCCcceEEEE
Confidence 1211 145676788999999995 9999997552 33448999999999999999999999999999
Q ss_pred cee----------------------eEEEEeEEEECCCC--------------------------------CCCCCeeee
Q 043061 195 YCV----------------------NVRALNLLVIAPGN--------------------------------SPNTDGIHV 220 (299)
Q Consensus 195 ~s~----------------------nv~i~~~~I~~~~~--------------------------------~~~~DGi~~ 220 (299)
.|+ ++.|++.+|....+ ....+||++
T Consensus 165 ~~~~~I~~N~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~ 244 (455)
T TIGR03808 165 TVSGDISGNTITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINA 244 (455)
T ss_pred cCcceEecceEeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEE
Confidence 999 77777777765444 346788888
Q ss_pred eceecEEEEeeEEEcCC-ccEEecCCcEeEEEEeeEEc
Q 043061 221 TGTQNILIKNCVIRTGD-DCISIVSGSKNVRATDIICG 257 (299)
Q Consensus 221 ~~s~~v~I~n~~i~~gD-D~iai~sgs~ni~I~n~~~~ 257 (299)
+.+.+++|++++|+..+ |+|.+.+ ++|+.|++++|.
T Consensus 245 ~~a~~v~V~gN~I~~~r~dgI~~ns-ss~~~i~~N~~~ 281 (455)
T TIGR03808 245 FRAGNVIVRGNRIRNCDYSAVRGNS-ASNIQITGNSVS 281 (455)
T ss_pred EccCCeEEECCEEeccccceEEEEc-ccCcEEECcEee
Confidence 88888999999998888 8888877 456666666665
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.91 E-value=8.2e-23 Score=177.94 Aligned_cols=213 Identities=28% Similarity=0.470 Sum_probs=138.8
Q ss_pred EEEeecCCCCCCC-cccHHHHHHHHHHHhhcCCccEEEecCCeeEEeee-eeeeCCCccceEEEEee---EEEE-eeccC
Q 043061 49 IVNVDDFEAKADG-TDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKP-ITFSGPCKSDLTMKIYG---TIKA-SVRLS 122 (299)
Q Consensus 49 ~~~v~d~Ga~gdg-~Ddt~Aiq~Ai~~a~~~~gg~~v~iP~G~~Y~~~~-l~l~~p~~snvtl~~~g---~l~~-~~~~~ 122 (299)
.+||++|||+||| +|||+|||+||++ ++..++++|+||+| +|++.. +.+ +++++|+++| ++.. .....
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~-~~~~~g~~v~~P~G-~Y~i~~~l~~----~s~v~l~G~g~~~~~~~~~~~~~ 74 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDA-AAAAGGGVVYFPPG-TYRISGTLII----PSNVTLRGAGGNSTILFLSGSGD 74 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHH-HCSTTSEEEEE-SE-EEEESS-EEE-----TTEEEEESSTTTEEEEECTTTS
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhh-cccCCCeEEEEcCc-EEEEeCCeEc----CCCeEEEccCCCeeEEEecCccc
Confidence 4899999999999 9999999999954 44455699999999 999865 988 8999999975 3333 22222
Q ss_pred CCCCCCceeEEEee-eec--EEEEeceEEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCceEEEeceeeE
Q 043061 123 DYSRDPRHWLVFEN-VNN--FRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNV 199 (299)
Q Consensus 123 ~~~~~~~~~i~~~~-~~n--i~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~s~nv 199 (299)
.+.. ......+.. -.+ +.|++ -+|+++....- ....++.+..++++.|++|+++++...++.+..+...
T Consensus 75 ~~~~-~~~~~~~~~~~~~~~~~i~n-l~i~~~~~~~~------~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~~~~~~ 146 (225)
T PF12708_consen 75 SFSV-VPGIGVFDSGNSNIGIQIRN-LTIDGNGIDPN------NNNNGIRFNSSQNVSISNVRIENSGGDGIYFNTGTDY 146 (225)
T ss_dssp TSCC-EEEEEECCSCSCCEEEEEEE-EEEEETCGCE-------SCEEEEEETTEEEEEEEEEEEES-SS-SEEEECCEEC
T ss_pred cccc-ccceeeeecCCCCceEEEEe-eEEEcccccCC------CCceEEEEEeCCeEEEEeEEEEccCccEEEEEccccC
Confidence 2210 011111111 111 22444 34444332110 0123789999999999999999998888888866655
Q ss_pred EEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcC--CceEEEeecCCCCCcccE
Q 043061 200 RALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGP--GHGISIGSLGAGNSEAFV 276 (299)
Q Consensus 200 ~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~--~~Gi~igs~~~~~~~~~v 276 (299)
.+.+.... .++.+. ++.++.+.+|.+..+++++ ..+.++++|+||++.. .+||.+...
T Consensus 147 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~i~n~~~~~~~~~gi~i~~~--------- 207 (225)
T PF12708_consen 147 RIIGSTHV--------SGIFIDNGSNNVIVNNCIFNGGDNGI--ILGNNNITISNNTFEGNCGNGINIEGG--------- 207 (225)
T ss_dssp EEECCEEE--------EEEEEESCEEEEEEECEEEESSSCSE--ECEEEEEEEECEEEESSSSESEEEEEC---------
T ss_pred cEeecccc--------eeeeeccceeEEEECCccccCCCcee--EeecceEEEEeEEECCccceeEEEECC---------
Confidence 55444322 134444 3467888999999999994 4444899999999986 358988433
Q ss_pred EEEEEEeeEEeCCceeEE
Q 043061 277 SNVLVNRARLSGTTNGVR 294 (299)
Q Consensus 277 ~nv~i~n~~~~~~~~gi~ 294 (299)
.++.|+||+|.++..||.
T Consensus 208 ~~~~i~n~~i~~~~~g~~ 225 (225)
T PF12708_consen 208 SNIIISNNTIENCDDGID 225 (225)
T ss_dssp SEEEEEEEEEESSSEEEE
T ss_pred eEEEEEeEEEECCccCcC
Confidence 248899999999998873
No 11
>PLN02793 Probable polygalacturonase
Probab=99.71 E-value=3.4e-15 Score=142.24 Aligned_cols=173 Identities=18% Similarity=0.260 Sum_probs=138.4
Q ss_pred ccceEEEEeeEEEEeeccCCCCC-----------CCceeEEEeeeecEEEEeceEEeCCCcccccccccCCCceeEEEEc
Q 043061 104 KSDLTMKIYGTIKASVRLSDYSR-----------DPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYG 172 (299)
Q Consensus 104 ~snvtl~~~g~l~~~~~~~~~~~-----------~~~~~i~~~~~~ni~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~ 172 (299)
.++++|.+.|+|.+.... -|.. ..+.++.|.+++|++|+|- ++-. .+.| .+++.+
T Consensus 142 ~~ni~ItG~G~IDG~G~~-ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gi-tl~n-Sp~~-----------~i~~~~ 207 (443)
T PLN02793 142 VNHLTVEGGGTVNGMGHE-WWAQSCKINHTNPCRHAPTAITFHKCKDLRVENL-NVID-SQQM-----------HIAFTN 207 (443)
T ss_pred CceEEEEeceEEECCCcc-cccccccccCCCCccCCceEEEEEeeccEEEECe-EEEc-CCCe-----------EEEEEc
Confidence 468888888888765431 1210 1356899999999999993 3332 2222 599999
Q ss_pred cCcEEEEeEEEEcCC----CceEEEeceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCC--
Q 043061 173 CKNVRVSSLRFRNSQ----KMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSG-- 245 (299)
Q Consensus 173 ~~nv~I~~v~i~ns~----~~~i~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sg-- 245 (299)
|+||+|++++|.++. .-+|++..|+||+|+||.|.+ ..|+|-+. +++||+|+||++..|. +|+|++-
T Consensus 208 ~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~-----gDDcIaik~~s~nI~I~n~~c~~Gh-GisIGSlg~ 281 (443)
T PLN02793 208 CRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRT-----GDDCISIVGNSSRIKIRNIACGPGH-GISIGSLGK 281 (443)
T ss_pred cCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeC-----CCCeEEecCCcCCEEEEEeEEeCCc-cEEEecccC
Confidence 999999999998743 346999999999999999997 68999995 7899999999998875 7999983
Q ss_pred ------cEeEEEEeeEEcCC-ceEEEeecCCCCCcccEEEEEEEeeEEeCCceeEEEEec
Q 043061 246 ------SKNVRATDIICGPG-HGISIGSLGAGNSEAFVSNVLVNRARLSGTTNGVRIKTW 298 (299)
Q Consensus 246 ------s~ni~I~n~~~~~~-~Gi~igs~~~~~~~~~v~nv~i~n~~~~~~~~gi~ik~~ 298 (299)
.+||+|+||++.++ .|+.|.+.-.+ ...|+||+|+|++|.+..++|.|..+
T Consensus 282 ~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~--~G~v~nItf~ni~m~nv~~pI~I~q~ 339 (443)
T PLN02793 282 SNSWSEVRDITVDGAFLSNTDNGVRIKTWQGG--SGNASKITFQNIFMENVSNPIIIDQY 339 (443)
T ss_pred cCCCCcEEEEEEEccEEeCCCceEEEEEeCCC--CEEEEEEEEEeEEEecCCceEEEEee
Confidence 48999999999876 59999886322 24699999999999999999998653
No 12
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.71 E-value=2.1e-15 Score=143.02 Aligned_cols=171 Identities=23% Similarity=0.249 Sum_probs=138.2
Q ss_pred ccceEEEEeeEEEEeeccCCCC--CCCceeEEEeeeecEEEEeceEEeCCCcccccccccCCCceeEEEEccCcEEEEeE
Q 043061 104 KSDLTMKIYGTIKASVRLSDYS--RDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSL 181 (299)
Q Consensus 104 ~snvtl~~~g~l~~~~~~~~~~--~~~~~~i~~~~~~ni~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v 181 (299)
..+++|.+.|+|.+.... -|. ..++.++.|.+++|+.|+| -++-. .+. | .+++.+|+||+|+++
T Consensus 112 ~~~i~I~G~GtIDGqG~~-wW~~~~~rP~~l~f~~~~nv~I~g-itl~N-Sp~-w----------~i~i~~c~nV~i~~l 177 (456)
T PLN03003 112 IEGLVIEGDGEINGQGSS-WWEHKGSRPTALKFRSCNNLRLSG-LTHLD-SPM-A----------HIHISECNYVTISSL 177 (456)
T ss_pred ccceEEeccceEeCCchh-hhhcccCCceEEEEEecCCcEEeC-eEEec-CCc-E----------EEEEeccccEEEEEE
Confidence 568888888888766532 232 2345688999999999998 33322 222 2 599999999999999
Q ss_pred EEEcCC----CceEEEeceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCC--------cEe
Q 043061 182 RFRNSQ----KMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSG--------SKN 248 (299)
Q Consensus 182 ~i~ns~----~~~i~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sg--------s~n 248 (299)
+|.++. ..+|++..|+||+|+|+.|.+ ..|+|.+. +++||+|+||++..| .+|+|++- .+|
T Consensus 178 ~I~ap~~spNTDGIDi~~S~nV~I~n~~I~t-----GDDCIaiksgs~NI~I~n~~c~~G-HGISIGSlg~~g~~~~V~N 251 (456)
T PLN03003 178 RINAPESSPNTDGIDVGASSNVVIQDCIIAT-----GDDCIAINSGTSNIHISGIDCGPG-HGISIGSLGKDGETATVEN 251 (456)
T ss_pred EEeCCCCCCCCCcEeecCcceEEEEecEEec-----CCCeEEeCCCCccEEEEeeEEECC-CCeEEeeccCCCCcceEEE
Confidence 999743 236999999999999999997 68999987 678999999999876 58999883 589
Q ss_pred EEEEeeEEcCC-ceEEEeecCCCCCcccEEEEEEEeeEEeCCceeEEEE
Q 043061 249 VRATDIICGPG-HGISIGSLGAGNSEAFVSNVLVNRARLSGTTNGVRIK 296 (299)
Q Consensus 249 i~I~n~~~~~~-~Gi~igs~~~~~~~~~v~nv~i~n~~~~~~~~gi~ik 296 (299)
|+|+||++.++ .|+.|.+...+ ...|+||+|+|++|.+..++|.|-
T Consensus 252 V~v~n~~~~~T~nGvRIKT~~Gg--~G~v~nItf~nI~m~nV~~pI~Id 298 (456)
T PLN03003 252 VCVQNCNFRGTMNGARIKTWQGG--SGYARMITFNGITLDNVENPIIID 298 (456)
T ss_pred EEEEeeEEECCCcEEEEEEeCCC--CeEEEEEEEEeEEecCccceEEEE
Confidence 99999999886 59999886432 246999999999999999999884
No 13
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.69 E-value=5.3e-15 Score=139.37 Aligned_cols=174 Identities=19% Similarity=0.231 Sum_probs=138.0
Q ss_pred ccceEEEEeeEEEEeeccCCCC----------CCCceeEEEeeeecEEEEeceEEeCCCcccccccccCCCceeEEEEcc
Q 043061 104 KSDLTMKIYGTIKASVRLSDYS----------RDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGC 173 (299)
Q Consensus 104 ~snvtl~~~g~l~~~~~~~~~~----------~~~~~~i~~~~~~ni~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~ 173 (299)
..+++|.+.|+|.+.... -|. ..++.++.|.+++|+.|+| -++-.. + .| .+++.+|
T Consensus 121 ~~ni~I~G~G~IDG~G~~-ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~g-itl~nS-p-~w----------~i~~~~~ 186 (404)
T PLN02188 121 VNGLTLTGGGTFDGQGAA-AWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRG-ITSVNS-K-FF----------HIALVEC 186 (404)
T ss_pred eeeEEEEeeEEEeCCCcc-cccccccccCCCCCcCceEEEEEeeeeEEEeC-eEEEcC-C-Ce----------EEEEEcc
Confidence 367888888888776532 221 1135678999999999999 344322 2 23 6999999
Q ss_pred CcEEEEeEEEEcCC----CceEEEeceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecC----
Q 043061 174 KNVRVSSLRFRNSQ----KMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVS---- 244 (299)
Q Consensus 174 ~nv~I~~v~i~ns~----~~~i~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s---- 244 (299)
+||+|++++|.++. .-+|++..|+||+|+||.|.+ ..|+|.+. +++||+|+||.+..| .+|+|++
T Consensus 187 ~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~-----GDDcIaiksg~~nI~I~n~~c~~g-hGisiGSlG~~ 260 (404)
T PLN02188 187 RNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGT-----GDDCISIGQGNSQVTITRIRCGPG-HGISVGSLGRY 260 (404)
T ss_pred ccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeC-----CCcEEEEccCCccEEEEEEEEcCC-CcEEeCCCCCC
Confidence 99999999998643 236999999999999999997 68999996 678999999999777 5799988
Q ss_pred ----CcEeEEEEeeEEcCC-ceEEEeecCCCCCcccEEEEEEEeeEEeCCceeEEEEe
Q 043061 245 ----GSKNVRATDIICGPG-HGISIGSLGAGNSEAFVSNVLVNRARLSGTTNGVRIKT 297 (299)
Q Consensus 245 ----gs~ni~I~n~~~~~~-~Gi~igs~~~~~~~~~v~nv~i~n~~~~~~~~gi~ik~ 297 (299)
+-+||+|+||++.++ +|+.|.+....+....|+||+|+|++|.+..++|.|..
T Consensus 261 ~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~ 318 (404)
T PLN02188 261 PNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQ 318 (404)
T ss_pred CcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEc
Confidence 248999999999886 59999875322223579999999999999999999864
No 14
>PLN02218 polygalacturonase ADPG
Probab=99.67 E-value=6.8e-15 Score=139.59 Aligned_cols=172 Identities=19% Similarity=0.261 Sum_probs=135.6
Q ss_pred ccceEEEEe--eEEEEeeccCCCC-----------CCCceeEEEeeeecEEEEeceEEeCCCcccccccccCCCceeEEE
Q 043061 104 KSDLTMKIY--GTIKASVRLSDYS-----------RDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTF 170 (299)
Q Consensus 104 ~snvtl~~~--g~l~~~~~~~~~~-----------~~~~~~i~~~~~~ni~I~G~G~idG~g~~~w~~~~~~~~~~~i~~ 170 (299)
..|++|.+. |+|.+.... -|. ..++.++.|.+++|++|+| -++... +. | .+++
T Consensus 155 ~~ni~I~G~~~GtIDG~G~~-WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~g-itl~nS-p~-w----------~i~~ 220 (431)
T PLN02218 155 VNNLSVDGGSTGVVDGNGET-WWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKN-LRVRNA-QQ-I----------QISI 220 (431)
T ss_pred CcEEEEECCCCcEEeCCchh-hhhcccccCCcCccCcCCEEEEEEccccEEEeC-eEEEcC-CC-E----------EEEE
Confidence 467788775 777665421 121 1134578999999999999 444332 22 2 6999
Q ss_pred EccCcEEEEeEEEEcC---C-CceEEEeceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCC
Q 043061 171 YGCKNVRVSSLRFRNS---Q-KMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSG 245 (299)
Q Consensus 171 ~~~~nv~I~~v~i~ns---~-~~~i~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sg 245 (299)
.+|+||+|++++|.++ | .-+|++..|+||+|+||.|.+ ..|+|-+. +++||+|+||++..| .+|+|++-
T Consensus 221 ~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~t-----GDDcIaIksgs~nI~I~n~~c~~G-HGisIGS~ 294 (431)
T PLN02218 221 EKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGT-----GDDCISIESGSQNVQINDITCGPG-HGISIGSL 294 (431)
T ss_pred EceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEec-----CCceEEecCCCceEEEEeEEEECC-CCEEECcC
Confidence 9999999999999864 3 236999999999999999997 68999986 688999999999876 57999883
Q ss_pred --------cEeEEEEeeEEcCC-ceEEEeecCCCCCcccEEEEEEEeeEEeCCceeEEEEe
Q 043061 246 --------SKNVRATDIICGPG-HGISIGSLGAGNSEAFVSNVLVNRARLSGTTNGVRIKT 297 (299)
Q Consensus 246 --------s~ni~I~n~~~~~~-~Gi~igs~~~~~~~~~v~nv~i~n~~~~~~~~gi~ik~ 297 (299)
.+||+|+||++.++ .|+.|.+.-.+ ...|+||+|+|++|.+..++|.|..
T Consensus 295 g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg--~G~v~nI~f~ni~m~~V~~pI~Idq 353 (431)
T PLN02218 295 GDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGG--SGTASNIIFQNIQMENVKNPIIIDQ 353 (431)
T ss_pred CCCCCCceEEEEEEEccEEecCCcceEEeecCCC--CeEEEEEEEEeEEEEcccccEEEEe
Confidence 47999999999876 59999886322 2479999999999999999998863
No 15
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.66 E-value=6.3e-15 Score=135.17 Aligned_cols=190 Identities=19% Similarity=0.209 Sum_probs=122.6
Q ss_pred HHHHHHHHhhcCCccEEEecCCeeEEe-eeeeeeCCCccceEEEEeeE----EEEeeccCCCCCCCceeEEEeeeecEEE
Q 043061 68 FMEAWEEACSSENEAVLVVPNNKIYHL-KPITFSGPCKSDLTMKIYGT----IKASVRLSDYSRDPRHWLVFENVNNFRV 142 (299)
Q Consensus 68 iq~Ai~~a~~~~gg~~v~iP~G~~Y~~-~~l~l~~p~~snvtl~~~g~----l~~~~~~~~~~~~~~~~i~~~~~~ni~I 142 (299)
||+|++ +++ +| .+|+||+| +|.+ ++|.+. +++++|++.|. |.+..... ....+ ...+++|+|
T Consensus 1 iQ~Ai~-~A~-~G-DtI~l~~G-~Y~~~~~l~I~---~~~Iti~G~g~~~tvid~~~~~~-----~~~~i-~v~a~~VtI 67 (314)
T TIGR03805 1 LQEALI-AAQ-PG-DTIVLPEG-VFQFDRTLSLD---ADGVTIRGAGMDETILDFSGQVG-----GAEGL-LVTSDDVTL 67 (314)
T ss_pred CHhHHh-hCC-CC-CEEEECCC-EEEcceeEEEe---CCCeEEEecCCCccEEecccCCC-----CCceE-EEEeCCeEE
Confidence 699996 343 34 69999999 9986 788884 47899987652 33332110 01222 234677777
Q ss_pred EeceEEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEc-------CCCceEEEeceeeEEEEeEEEECCCCCCCC
Q 043061 143 EGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRN-------SQKMHLTFQYCVNVRALNLLVIAPGNSPNT 215 (299)
Q Consensus 143 ~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~n-------s~~~~i~~~~s~nv~i~~~~I~~~~~~~~~ 215 (299)
+| -++...+. .+|.+..|++++|+++++.. ...++|.+..|++++|+++.+... ..
T Consensus 68 ~~-ltI~~~~~------------~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~----~d 130 (314)
T TIGR03805 68 SD-LAVENTKG------------DGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGA----SD 130 (314)
T ss_pred Ee-eEEEcCCC------------CeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECC----Cc
Confidence 77 34433211 15777788888888888761 235678888888888888888752 23
Q ss_pred CeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcCC-ceEEEeecCCCCCcccEEEEEEEeeEEeCC
Q 043061 216 DGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPG-HGISIGSLGAGNSEAFVSNVLVNRARLSGT 289 (299)
Q Consensus 216 DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~~-~Gi~igs~~~~~~~~~v~nv~i~n~~~~~~ 289 (299)
+||.+..|++++|++|++.....||-+.. |.++.|+++++... .||.+.++-... ...-+++.|+++.+.+.
T Consensus 131 ~GIyv~~s~~~~v~nN~~~~n~~GI~i~~-S~~~~v~~N~~~~N~~Gi~v~~~p~~~-~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 131 AGIYVGQSQNIVVRNNVAEENVAGIEIEN-SQNADVYNNIATNNTGGILVFDLPGLP-QPGGSNVRVFDNIIFDN 203 (314)
T ss_pred ccEEECCCCCeEEECCEEccCcceEEEEe-cCCcEEECCEEeccceeEEEeecCCCC-cCCccceEEECCEEECC
Confidence 47888778888888888877777777764 56777777777643 477774432211 11235777777777654
No 16
>PLN02155 polygalacturonase
Probab=99.65 E-value=2.3e-14 Score=134.50 Aligned_cols=170 Identities=22% Similarity=0.287 Sum_probs=133.3
Q ss_pred ccceEEEEeeEEEEeeccCCC--C------CCCceeEEEeeeecEEEEeceEEeCCCcccccccccCCCceeEEEEccCc
Q 043061 104 KSDLTMKIYGTIKASVRLSDY--S------RDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKN 175 (299)
Q Consensus 104 ~snvtl~~~g~l~~~~~~~~~--~------~~~~~~i~~~~~~ni~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~n 175 (299)
..+++|.+ |++.+.... -| . .....++.|.+++|++|+| -++- +.+.| .+++.+|+|
T Consensus 114 ~~~i~i~G-G~iDGqG~~-ww~~~~~~~~~~~~p~~i~~~~~~nv~i~g-itl~-nSp~w-----------~i~~~~~~n 178 (394)
T PLN02155 114 VNRFSLVG-GTFDARANG-FWSCRKSGQNCPPGVRSISFNSAKDVIISG-VKSM-NSQVS-----------HMTLNGCTN 178 (394)
T ss_pred cCCCEEEc-cEEecCcee-EEEcccCCCCCCCcccceeEEEeeeEEEEC-eEEE-cCCCe-----------EEEEECeee
Confidence 46777776 776554321 11 1 0123568999999999998 3443 22222 699999999
Q ss_pred EEEEeEEEEcCCC----ceEEEeceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCC-----
Q 043061 176 VRVSSLRFRNSQK----MHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSG----- 245 (299)
Q Consensus 176 v~I~~v~i~ns~~----~~i~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sg----- 245 (299)
|+|++++|.++.. -+|++..|+||+|+|+.|.+ ..|+|.+. +++||+|+||++..| .+++|++.
T Consensus 179 v~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~-----gDDcIaik~gs~nI~I~n~~c~~G-hGisIGS~g~~~~ 252 (394)
T PLN02155 179 VVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQT-----GDDCVAIGPGTRNFLITKLACGPG-HGVSIGSLAKELN 252 (394)
T ss_pred EEEEEEEEECCCCCCCCCccccccceeEEEEeeEEec-----CCceEEcCCCCceEEEEEEEEECC-ceEEeccccccCC
Confidence 9999999987542 46999999999999999997 78999987 578999999999976 57999883
Q ss_pred ---cEeEEEEeeEEcCC-ceEEEeec-CCCCCcccEEEEEEEeeEEeCCceeEEEE
Q 043061 246 ---SKNVRATDIICGPG-HGISIGSL-GAGNSEAFVSNVLVNRARLSGTTNGVRIK 296 (299)
Q Consensus 246 ---s~ni~I~n~~~~~~-~Gi~igs~-~~~~~~~~v~nv~i~n~~~~~~~~gi~ik 296 (299)
.+||+|+||++.++ .|+.|.+. +.+ ...|+||+|+|++|.+..++|.|.
T Consensus 253 ~~~V~nV~v~n~~~~~t~~GirIKT~~~~~--gG~v~nI~f~ni~m~~v~~pI~i~ 306 (394)
T PLN02155 253 EDGVENVTVSSSVFTGSQNGVRIKSWARPS--TGFVRNVFFQDLVMKNVENPIIID 306 (394)
T ss_pred CCcEEEEEEEeeEEeCCCcEEEEEEecCCC--CEEEEEEEEEeEEEcCccccEEEE
Confidence 38999999999876 59999884 211 247999999999999999999985
No 17
>PLN03010 polygalacturonase
Probab=99.63 E-value=8.2e-14 Score=131.19 Aligned_cols=167 Identities=20% Similarity=0.277 Sum_probs=133.4
Q ss_pred ccceEEEEeeEEEEeeccCCCCCCCceeEEEeeeecEEEEeceEEeCCCcccccccccCCCceeEEEEccCcEEEEeEEE
Q 043061 104 KSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRF 183 (299)
Q Consensus 104 ~snvtl~~~g~l~~~~~~~~~~~~~~~~i~~~~~~ni~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i 183 (299)
.++++|.+.|+|.+... .|- .++.|.+++|++|+| -++-. .+. | .+++.+|+|++|++++|
T Consensus 138 v~nv~I~G~G~IDG~G~--~ww----~~l~~~~~~nv~v~g-itl~n-sp~-~----------~i~i~~~~nv~i~~i~I 198 (409)
T PLN03010 138 VSGLMIDGSGTIDGRGS--SFW----EALHISKCDNLTING-ITSID-SPK-N----------HISIKTCNYVAISKINI 198 (409)
T ss_pred ccccEEeeceEEeCCCc--ccc----ceEEEEeecCeEEee-eEEEc-CCc-e----------EEEEeccccEEEEEEEE
Confidence 47888888888876542 221 258899999999999 33322 222 2 59999999999999999
Q ss_pred EcCC----CceEEEeceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCC--------cEeEE
Q 043061 184 RNSQ----KMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSG--------SKNVR 250 (299)
Q Consensus 184 ~ns~----~~~i~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sg--------s~ni~ 250 (299)
.++. .-+|++..|++|+|+|+.|.+ ..|+|-+. ++.++.|+++.+..+ .+|+|++- -+||+
T Consensus 199 ~a~~~s~NTDGiDi~~s~nV~I~n~~I~~-----gDDcIaiksgs~ni~I~~~~C~~g-HGisIGS~g~~~~~~~V~nV~ 272 (409)
T PLN03010 199 LAPETSPNTDGIDISYSTNINIFDSTIQT-----GDDCIAINSGSSNINITQINCGPG-HGISVGSLGADGANAKVSDVH 272 (409)
T ss_pred eCCCCCCCCCceeeeccceEEEEeeEEec-----CCCeEEecCCCCcEEEEEEEeECc-CCEEEccCCCCCCCCeeEEEE
Confidence 9754 236999999999999999998 68999997 456888888888755 58999884 48999
Q ss_pred EEeeEEcCC-ceEEEeecCCCCCcccEEEEEEEeeEEeCCceeEEEEe
Q 043061 251 ATDIICGPG-HGISIGSLGAGNSEAFVSNVLVNRARLSGTTNGVRIKT 297 (299)
Q Consensus 251 I~n~~~~~~-~Gi~igs~~~~~~~~~v~nv~i~n~~~~~~~~gi~ik~ 297 (299)
|+||++.++ .|+.|.+...+ ...|+||+|+|++|.+..++|.|-.
T Consensus 273 v~n~~i~~t~~GirIKt~~G~--~G~v~nItf~nI~m~~v~~pI~I~q 318 (409)
T PLN03010 273 VTHCTFNQTTNGARIKTWQGG--QGYARNISFENITLINTKNPIIIDQ 318 (409)
T ss_pred EEeeEEeCCCcceEEEEecCC--CEEEEEeEEEeEEEecCCccEEEEe
Confidence 999999876 59999886322 2479999999999999999998853
No 18
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.63 E-value=2.4e-14 Score=132.24 Aligned_cols=171 Identities=25% Similarity=0.370 Sum_probs=131.6
Q ss_pred cceEEEEeeEEEEeeccCCCC---------CCCceeEEEeeeecEEEEeceEEeCCCcccccccccCCCceeEEEEccCc
Q 043061 105 SDLTMKIYGTIKASVRLSDYS---------RDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKN 175 (299)
Q Consensus 105 snvtl~~~g~l~~~~~~~~~~---------~~~~~~i~~~~~~ni~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~n 175 (299)
.++++.+.|++.+.... -|. ..++.++.+.+++|++|+| -++- +.+.| .+++..|+|
T Consensus 60 ~ni~i~G~G~IDG~G~~-w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~-i~~~-nsp~w-----------~~~~~~~~n 125 (326)
T PF00295_consen 60 ENITITGKGTIDGNGQA-WWDGSGDANNNGQRRPRLIRFNNCKNVTIEG-ITIR-NSPFW-----------HIHINDCDN 125 (326)
T ss_dssp EEEECTTSSEEE--GGG-TCSSCTTHCCSSSSSSESEEEEEEEEEEEES-EEEE-S-SSE-----------SEEEESEEE
T ss_pred EEEEecCCceEcCchhh-hhccccccccccccccceeeeeeecceEEEe-eEec-CCCee-----------EEEEEccCC
Confidence 35555555677665431 111 1245789999999999998 3333 23333 589999999
Q ss_pred EEEEeEEEEcCCC----ceEEEeceeeEEEEeEEEECCCCCCCCCeeeeecee-cEEEEeeEEEcCCccEEecCC-----
Q 043061 176 VRVSSLRFRNSQK----MHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQ-NILIKNCVIRTGDDCISIVSG----- 245 (299)
Q Consensus 176 v~I~~v~i~ns~~----~~i~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~-~v~I~n~~i~~gDD~iai~sg----- 245 (299)
++|++++|.++.. -+|++..|+|++|+||.|.+ ..|+|.+.+.+ +|+|+||++..+ .+++|++.
T Consensus 126 v~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~-----gDD~Iaiks~~~ni~v~n~~~~~g-hGisiGS~~~~~~ 199 (326)
T PF00295_consen 126 VTISNITINNPANSPNTDGIDIDSSKNVTIENCFIDN-----GDDCIAIKSGSGNILVENCTCSGG-HGISIGSEGSGGS 199 (326)
T ss_dssp EEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEES-----SSESEEESSEECEEEEESEEEESS-SEEEEEEESSSSE
T ss_pred eEEcceEEEecCCCCCcceEEEEeeeEEEEEEeeccc-----ccCcccccccccceEEEeEEEecc-ccceeeeccCCcc
Confidence 9999999998653 37999999999999999997 68999998666 999999999875 45998763
Q ss_pred ---cEeEEEEeeEEcCC-ceEEEeecCCCCCcccEEEEEEEeeEEeCCceeEEEEe
Q 043061 246 ---SKNVRATDIICGPG-HGISIGSLGAGNSEAFVSNVLVNRARLSGTTNGVRIKT 297 (299)
Q Consensus 246 ---s~ni~I~n~~~~~~-~Gi~igs~~~~~~~~~v~nv~i~n~~~~~~~~gi~ik~ 297 (299)
-+||+|+||++.++ .|+.|.+.-. ....|+||+|+|++|.+..++|.|..
T Consensus 200 ~~~i~nV~~~n~~i~~t~~gi~iKt~~~--~~G~v~nI~f~ni~~~~v~~pi~i~~ 253 (326)
T PF00295_consen 200 QNDIRNVTFENCTIINTDNGIRIKTWPG--GGGYVSNITFENITMENVKYPIFIDQ 253 (326)
T ss_dssp --EEEEEEEEEEEEESESEEEEEEEETT--TSEEEEEEEEEEEEEEEESEEEEEEE
T ss_pred ccEEEeEEEEEEEeeccceEEEEEEecc--cceEEeceEEEEEEecCCceEEEEEe
Confidence 27999999999876 5999988532 23579999999999999989998864
No 19
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.51 E-value=5.5e-13 Score=125.96 Aligned_cols=182 Identities=17% Similarity=0.249 Sum_probs=112.3
Q ss_pred cEEEecCCeeEEeee---eeeeCCCccce-EEEEe-eEEEEeeccCCCCCCCceeEEEeeeecEEEEeceEEeCCCcccc
Q 043061 82 AVLVVPNNKIYHLKP---ITFSGPCKSDL-TMKIY-GTIKASVRLSDYSRDPRHWLVFENVNNFRVEGGGTIDGNGKVWW 156 (299)
Q Consensus 82 ~~v~iP~G~~Y~~~~---l~l~~p~~snv-tl~~~-g~l~~~~~~~~~~~~~~~~i~~~~~~ni~I~G~G~idG~g~~~w 156 (299)
.+|||++| +|.++. +.| ++|+ ++.++ |..+.. ++.+....+|+.|.|.|+|.|....|-
T Consensus 233 ~~lYF~PG-Vy~ig~~~~l~L----~sn~~~VYlApGAyVkG-----------Af~~~~~~~nv~i~G~GVLSGe~Yvy~ 296 (582)
T PF03718_consen 233 DTLYFKPG-VYWIGSDYHLRL----PSNTKWVYLAPGAYVKG-----------AFEYTDTQQNVKITGRGVLSGEQYVYE 296 (582)
T ss_dssp SEEEE-SE-EEEEBCTC-EEE-----TT--EEEE-TTEEEES------------EEE---SSEEEEESSSEEE-TTS-TT
T ss_pred ceEEeCCc-eEEeCCCccEEE----CCCccEEEEcCCcEEEE-----------EEEEccCCceEEEEeeEEEcCcceeEe
Confidence 59999999 999875 788 6774 77776 544322 233346889999999999999887763
Q ss_pred cccccC----------CC--ceeEE---EEccCcEEEEeEEEEcCCCceEEEecee----eEEEEeEEEECCCCCCCCCe
Q 043061 157 RKSCKV----------NK--SLAVT---FYGCKNVRVSSLRFRNSQKMHLTFQYCV----NVRALNLLVIAPGNSPNTDG 217 (299)
Q Consensus 157 ~~~~~~----------~~--~~~i~---~~~~~nv~I~~v~i~ns~~~~i~~~~s~----nv~i~~~~I~~~~~~~~~DG 217 (299)
.+..+. .+ -.++. ...++++.+++++|.++|++.+.+...+ +..|+|.++-.. .-.++||
T Consensus 297 A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGa-W~~qtDG 375 (582)
T PF03718_consen 297 ADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGA-WYFQTDG 375 (582)
T ss_dssp BBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE----CTT---
T ss_pred ccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeee-EEeccCC
Confidence 221110 00 01344 4556799999999999999999998544 589999998853 2368999
Q ss_pred eeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcCCc-e--EEEeecCCCCCcccEEEEEEEeeEEeCC
Q 043061 218 IHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGH-G--ISIGSLGAGNSEAFVSNVLVNRARLSGT 289 (299)
Q Consensus 218 i~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~~~-G--i~igs~~~~~~~~~v~nv~i~n~~~~~~ 289 (299)
|.+. ++-+|+||.++..||+|-+-. +++.|+||+++..+ | |.+|-.. ..+++|.|+|+.+..+
T Consensus 376 i~ly--~nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW~p-----r~isnv~veni~IIh~ 441 (582)
T PF03718_consen 376 IELY--PNSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGWTP-----RNISNVSVENIDIIHN 441 (582)
T ss_dssp -B----TT-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--CS--------EEEEEEEEEEEEE-
T ss_pred cccc--CCCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeeccc-----cccCceEEeeeEEEee
Confidence 9886 567889999999999996654 69999999998644 3 7776553 3499999999999875
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.25 E-value=1.7e-10 Score=111.34 Aligned_cols=147 Identities=18% Similarity=0.290 Sum_probs=115.0
Q ss_pred ceeEEEeeeecEEEEeceEEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCC---ceEEEeceeeEEEEeEE
Q 043061 129 RHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQK---MHLTFQYCVNVRALNLL 205 (299)
Q Consensus 129 ~~~i~~~~~~ni~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~---~~i~~~~s~nv~i~~~~ 205 (299)
...+.+.+|.||.++|..+... .+| .+++..|+|++++|++|.+... -++.+..|+|+.|++|+
T Consensus 238 p~~~~l~~c~NV~~~g~~i~ns---~~~----------~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~ 304 (542)
T COG5434 238 PRTVVLKGCRNVLLEGLNIKNS---PLW----------TVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCR 304 (542)
T ss_pred CceEEEeccceEEEeeeEecCC---CcE----------EEeeecccCceecceEEECCCCCCCCccccccceeEEEeccE
Confidence 4567899999999999433322 224 5999999999999999987764 37999999999999999
Q ss_pred EECCCC------CCCCCe-eeeeceecEEEEeeEEEcCCccEEecCC----cEeEEEEeeEEcCC-ceEEEeecCCCCCc
Q 043061 206 VIAPGN------SPNTDG-IHVTGTQNILIKNCVIRTGDDCISIVSG----SKNVRATDIICGPG-HGISIGSLGAGNSE 273 (299)
Q Consensus 206 I~~~~~------~~~~DG-i~~~~s~~v~I~n~~i~~gDD~iai~sg----s~ni~I~n~~~~~~-~Gi~igs~~~~~~~ 273 (299)
|....+ +...|+ =....+++++|.||++..|..++.+.+. -+||++|||.+... .||.|++....+
T Consensus 305 fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~g-- 382 (542)
T COG5434 305 FDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRG-- 382 (542)
T ss_pred EecCCceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCcceeeeeeecccc--
Confidence 998332 122222 1223678999999999999988888774 59999999999874 699998854322
Q ss_pred ccEEEEEEEeeEEeCCc
Q 043061 274 AFVSNVLVNRARLSGTT 290 (299)
Q Consensus 274 ~~v~nv~i~n~~~~~~~ 290 (299)
..++||+|+++.|.+..
T Consensus 383 G~v~nI~~~~~~~~nv~ 399 (542)
T COG5434 383 GGVRNIVFEDNKMRNVK 399 (542)
T ss_pred eeEEEEEEecccccCcc
Confidence 56999999999999864
No 21
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=99.00 E-value=4.7e-09 Score=91.52 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=58.2
Q ss_pred EEeceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcCCceEEEeecCCCC
Q 043061 192 TFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIGSLGAGN 271 (299)
Q Consensus 192 ~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~~~Gi~igs~~~~~ 271 (299)
.+++|+||+|+|+++.+ .|. ++.|+||+|.++++. |=.+.-.|+|+++.||++.+.+|+..
T Consensus 151 ~Fq~~kNvei~ns~l~s------KDA--FWn~eNVtVyDS~i~----GEYLgW~SkNltliNC~I~g~QpLCY------- 211 (277)
T PF12541_consen 151 SFQYCKNVEIHNSKLDS------KDA--FWNCENVTVYDSVIN----GEYLGWNSKNLTLINCTIEGTQPLCY------- 211 (277)
T ss_pred EeeceeeEEEEccEEec------ccc--cccCCceEEEcceEe----eeEEEEEcCCeEEEEeEEeccCccEe-------
Confidence 35566666666666664 222 356666666666664 33555568999999999999999876
Q ss_pred CcccEEEEEEEeeEEeCCceeEE
Q 043061 272 SEAFVSNVLVNRARLSGTTNGVR 294 (299)
Q Consensus 272 ~~~~v~nv~i~n~~~~~~~~gi~ 294 (299)
+.|+..+||+|.+|+-.+.
T Consensus 212 ----~~~L~l~nC~~~~tdlaFE 230 (277)
T PF12541_consen 212 ----CDNLVLENCTMIDTDLAFE 230 (277)
T ss_pred ----ecceEEeCcEeecceeeee
Confidence 8999999999999876654
No 22
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.89 E-value=8.9e-08 Score=88.05 Aligned_cols=157 Identities=19% Similarity=0.171 Sum_probs=113.6
Q ss_pred eEEEeeeecEEEEeceEEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCceEEEeceeeEEEEeEEEECCC
Q 043061 131 WLVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPG 210 (299)
Q Consensus 131 ~i~~~~~~ni~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~s~nv~i~~~~I~~~~ 210 (299)
-+...++++++|++ -.+.+.+..-+ .+...+|++..|++++|+++++......+|.+..|++++|+++++..
T Consensus 79 GI~v~~s~~i~I~n-~~i~~~~~~~~-----~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~s~~~~v~nN~~~~-- 150 (314)
T TIGR03805 79 GVKVKGSDGIIIRR-LRVEWTGGPKS-----SNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQSQNIVVRNNVAEE-- 150 (314)
T ss_pred eEEEeCCCCEEEEe-eEEEeccCccc-----cCCcceEEEeccCCEEEECCEEECCCcccEEECCCCCeEEECCEEcc--
Confidence 35567788888888 35544332111 12234799999999999999999998889999999999999999985
Q ss_pred CCCCCCeeeeeceecEEEEeeEEEcCCccEEec-------CCcEeEEEEeeEEcCC--ceEEE-e----e--cCCCCCcc
Q 043061 211 NSPNTDGIHVTGTQNILIKNCVIRTGDDCISIV-------SGSKNVRATDIICGPG--HGISI-G----S--LGAGNSEA 274 (299)
Q Consensus 211 ~~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~-------sgs~ni~I~n~~~~~~--~Gi~i-g----s--~~~~~~~~ 274 (299)
+..||++..|.++.|+++.+.+...++.+. ..+++++|+++.+... ..+.+ | + .+.+=--.
T Consensus 151 ---n~~GI~i~~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~ 227 (314)
T TIGR03805 151 ---NVAGIEIENSQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVM 227 (314)
T ss_pred ---CcceEEEEecCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEEE
Confidence 678999999999999999999888899882 3478999999988632 11111 0 0 01100001
Q ss_pred cEEEEEEEeeEEeCC-ceeEEEEec
Q 043061 275 FVSNVLVNRARLSGT-TNGVRIKTW 298 (299)
Q Consensus 275 ~v~nv~i~n~~~~~~-~~gi~ik~~ 298 (299)
..+++.|+|+++.++ ..|+-+-++
T Consensus 228 ~~~~v~I~~N~i~~n~~~~i~~~~~ 252 (314)
T TIGR03805 228 ANRDVEIFGNVISNNDTANVLISSY 252 (314)
T ss_pred cccceEEECCEEeCCcceeEEEEec
Confidence 137889999999985 467766554
No 23
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.80 E-value=2e-07 Score=82.16 Aligned_cols=90 Identities=21% Similarity=0.177 Sum_probs=50.1
Q ss_pred eEEEEccCcEEEEeEEEEcCCCceEEEeceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEcCCccEEecCCc
Q 043061 167 AVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGS 246 (299)
Q Consensus 167 ~i~~~~~~nv~I~~v~i~ns~~~~i~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs 246 (299)
+|++..+.+++|++.++.+.. .++.+..+.+.+|++.+|.. +..||.+..+.+.+|++++|.+...+|.+...
T Consensus 59 GI~~~~s~~~~i~~n~i~~n~-~Gi~l~~s~~~~I~~N~i~~-----n~~GI~l~~s~~~~I~~N~i~~~~~GI~l~~s- 131 (236)
T PF05048_consen 59 GIHLMGSSNNTIENNTISNNG-YGIYLMGSSNNTISNNTISN-----NGYGIYLYGSSNNTISNNTISNNGYGIYLSSS- 131 (236)
T ss_pred EEEEEccCCCEEEeEEEEccC-CCEEEEcCCCcEEECCEecC-----CCceEEEeeCCceEEECcEEeCCCEEEEEEeC-
Confidence 455666666666666666555 55555555555666666554 33366665555566666666555555555543
Q ss_pred EeEEEEeeEEcCC--ceEE
Q 043061 247 KNVRATDIICGPG--HGIS 263 (299)
Q Consensus 247 ~ni~I~n~~~~~~--~Gi~ 263 (299)
.+.+|+++++... .||.
T Consensus 132 ~~n~I~~N~i~~n~~~Gi~ 150 (236)
T PF05048_consen 132 SNNTITGNTISNNTDYGIY 150 (236)
T ss_pred CCCEEECeEEeCCCccceE
Confidence 4555555555433 2554
No 24
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.78 E-value=1.5e-07 Score=76.71 Aligned_cols=139 Identities=24% Similarity=0.297 Sum_probs=82.5
Q ss_pred EEEeeeecEEEEeceEEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCceEEEeceeeEEEEeEEEECCCC
Q 043061 132 LVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGN 211 (299)
Q Consensus 132 i~~~~~~ni~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~s~nv~i~~~~I~~~~~ 211 (299)
+.+.+..+++|++ -+|...+. .+|++..+..++|++++|.+ .+.++.+....+++++++.+...
T Consensus 3 i~i~~~~~~~i~~-~~i~~~~~------------~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~-- 66 (158)
T PF13229_consen 3 ISINNGSNVTIRN-CTISNNGG------------DGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDN-- 66 (158)
T ss_dssp EEETTCEC-EEES-EEEESSSS------------ECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES---
T ss_pred EEEECCcCeEEee-eEEEeCCC------------eEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEc--
Confidence 3444555666666 44544321 15888888888888888888 66778888888888888888862
Q ss_pred CCCCCeeeeeceecEEEEeeEEEcCC-ccEEecCCcEeEEEEeeEEcC--CceEEEeecCCCCCcccEEEEEEEeeEEeC
Q 043061 212 SPNTDGIHVTGTQNILIKNCVIRTGD-DCISIVSGSKNVRATDIICGP--GHGISIGSLGAGNSEAFVSNVLVNRARLSG 288 (299)
Q Consensus 212 ~~~~DGi~~~~s~~v~I~n~~i~~gD-D~iai~sgs~ni~I~n~~~~~--~~Gi~igs~~~~~~~~~v~nv~i~n~~~~~ 288 (299)
..|+.+..+..++|++|.+.... .+|.+...+++++|++|++.. +.|+.+.... -.+++|++|++.+
T Consensus 67 ---~~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~-------~~~~~i~~n~i~~ 136 (158)
T PF13229_consen 67 ---GSGIYVSGSSNITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGS-------SPNVTIENNTISN 136 (158)
T ss_dssp ---SEEEECCS-CS-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC---------S-EEECEEEEC
T ss_pred ---cceEEEEecCCceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCC-------CCeEEEEEEEEEe
Confidence 26777777888888888887654 477777325678888888864 2577664332 1356777777777
Q ss_pred Cc-eeEEEE
Q 043061 289 TT-NGVRIK 296 (299)
Q Consensus 289 ~~-~gi~ik 296 (299)
.. +||.+.
T Consensus 137 ~~~~gi~~~ 145 (158)
T PF13229_consen 137 NGGNGIYLI 145 (158)
T ss_dssp ESSEEEE-T
T ss_pred CcceeEEEE
Confidence 54 777654
No 25
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.73 E-value=1.1e-07 Score=77.56 Aligned_cols=117 Identities=21% Similarity=0.263 Sum_probs=89.1
Q ss_pred eEEEEccCcEEEEeEEEEcCCCceEEEeceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEcCCccEEecCCc
Q 043061 167 AVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGS 246 (299)
Q Consensus 167 ~i~~~~~~nv~I~~v~i~ns~~~~i~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs 246 (299)
+|.+..+.+++|++++|.+....++.+..+..++|++++|.. ...|+.+....+++|++|++.....++.+. .+
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~-~~ 75 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVS-GS 75 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECC-S-
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEE-ec
Confidence 478888899999999999999999999999999999999997 678999999899999999999887667666 68
Q ss_pred EeEEEEeeEEcCC--ceEEEeecCCCCCcccEEEEEEEeeEEeCCc-eeEEEEe
Q 043061 247 KNVRATDIICGPG--HGISIGSLGAGNSEAFVSNVLVNRARLSGTT-NGVRIKT 297 (299)
Q Consensus 247 ~ni~I~n~~~~~~--~Gi~igs~~~~~~~~~v~nv~i~n~~~~~~~-~gi~ik~ 297 (299)
.+++|++|.+... .||.+.. .-++++|++|+|.+.. .|+.+..
T Consensus 76 ~~~~i~~~~i~~~~~~gi~~~~--------~~~~~~i~~n~~~~~~~~gi~~~~ 121 (158)
T PF13229_consen 76 SNITIENNRIENNGDYGIYISN--------SSSNVTIENNTIHNNGGSGIYLEG 121 (158)
T ss_dssp CS-EEES-EEECSSS-SCE-TC--------EECS-EEES-EEECCTTSSCEEEE
T ss_pred CCceecCcEEEcCCCccEEEec--------cCCCEEEEeEEEEeCcceeEEEEC
Confidence 9999999999864 3788742 1456899999999876 8887754
No 26
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.64 E-value=2.2e-06 Score=76.31 Aligned_cols=130 Identities=18% Similarity=0.188 Sum_probs=79.5
Q ss_pred eEEEEeeEEEEeeccCCCCCCCceeEEEeeeecEEEEece---EEeCCCcccccccccCCCceeEEEEccCcEEEEeEEE
Q 043061 107 LTMKIYGTIKASVRLSDYSRDPRHWLVFENVNNFRVEGGG---TIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRF 183 (299)
Q Consensus 107 vtl~~~g~l~~~~~~~~~~~~~~~~i~~~~~~ni~I~G~G---~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i 183 (299)
+.|.+.|++.++. |++ ..+....+.|.+|.|.| ++-|- .+.+..+.||.|+|++|
T Consensus 77 ~ii~v~Gti~~s~-ps~------~k~~iki~sNkTivG~g~~a~~~g~---------------gl~i~~a~NVIirNltf 134 (345)
T COG3866 77 VIIVVKGTITAST-PSD------KKITIKIGSNKTIVGSGADATLVGG---------------GLKIRDAGNVIIRNLTF 134 (345)
T ss_pred EEEEEcceEeccC-CCC------ceEEEeeccccEEEeeccccEEEec---------------eEEEEeCCcEEEEeeEE
Confidence 3455567666652 111 12667778899999854 44442 47788899999999999
Q ss_pred EcCC-----CceEEE-eceeeEEEEeEEEECCC---CCCCCCee-eee-ceecEEEEeeEEEcCCccEEecCCc------
Q 043061 184 RNSQ-----KMHLTF-QYCVNVRALNLLVIAPG---NSPNTDGI-HVT-GTQNILIKNCVIRTGDDCISIVSGS------ 246 (299)
Q Consensus 184 ~ns~-----~~~i~~-~~s~nv~i~~~~I~~~~---~~~~~DGi-~~~-~s~~v~I~n~~i~~gDD~iai~sgs------ 246 (299)
+..+ +-.|.+ ..+.|+.|++|++.... +....||. ++. .+..|+|.+|.|...|-+.-+....
T Consensus 135 ~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~ 214 (345)
T COG3866 135 EGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDD 214 (345)
T ss_pred EeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccC
Confidence 8877 345666 56667777777776522 11223332 232 4566777777776666655555431
Q ss_pred --EeEEEEeeEEcC
Q 043061 247 --KNVRATDIICGP 258 (299)
Q Consensus 247 --~ni~I~n~~~~~ 258 (299)
.+|++.+|.|.+
T Consensus 215 ~~~kvT~hhNyFkn 228 (345)
T COG3866 215 GKYKVTIHHNYFKN 228 (345)
T ss_pred CceeEEEecccccc
Confidence 346677666654
No 27
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.59 E-value=1.7e-06 Score=76.29 Aligned_cols=133 Identities=21% Similarity=0.211 Sum_probs=108.5
Q ss_pred EEEeeeecEEEEeceEEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCceEEEeceeeEEEEeEEEECCCC
Q 043061 132 LVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGN 211 (299)
Q Consensus 132 i~~~~~~ni~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~s~nv~i~~~~I~~~~~ 211 (299)
+++.+.++..|++. ++..... .+.+..+.+++|++.++.+. ..++++..|++++|+++.+..
T Consensus 16 i~l~~~~~~~i~~n-~i~~~~~-------------gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~--- 77 (236)
T PF05048_consen 16 IYLWNSSNNSIENN-TISNSRD-------------GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISN--- 77 (236)
T ss_pred EEEEeCCCCEEEcC-EEEeCCC-------------EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEc---
Confidence 66777788888773 3433221 58999999999999999999 789999999999999999997
Q ss_pred CCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcCC-ceEEEeecCCCCCcccEEEEEEEeeEEeCC-
Q 043061 212 SPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPG-HGISIGSLGAGNSEAFVSNVLVNRARLSGT- 289 (299)
Q Consensus 212 ~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~~-~Gi~igs~~~~~~~~~v~nv~i~n~~~~~~- 289 (299)
+..||.+..+.+.+|+++++.....+|.+.. +.+.+|+++++... .||.+... .+.+|+++++.+.
T Consensus 78 --n~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-s~~~~I~~N~i~~~~~GI~l~~s---------~~n~I~~N~i~~n~ 145 (236)
T PF05048_consen 78 --NGYGIYLMGSSNNTISNNTISNNGYGIYLYG-SSNNTISNNTISNNGYGIYLSSS---------SNNTITGNTISNNT 145 (236)
T ss_pred --cCCCEEEEcCCCcEEECCEecCCCceEEEee-CCceEEECcEEeCCCEEEEEEeC---------CCCEEECeEEeCCC
Confidence 5599999988878999999998877998876 56688999998743 58888432 4568888888887
Q ss_pred ceeEE
Q 043061 290 TNGVR 294 (299)
Q Consensus 290 ~~gi~ 294 (299)
..||+
T Consensus 146 ~~Gi~ 150 (236)
T PF05048_consen 146 DYGIY 150 (236)
T ss_pred ccceE
Confidence 88888
No 28
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.56 E-value=7.2e-06 Score=72.31 Aligned_cols=163 Identities=20% Similarity=0.187 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhhcCCccEEEecCCeeEEe-----eeeeeeCCCccceEEEEeeEEEEeeccCCCCCCCceeEEEeeeec
Q 043061 65 SKAFMEAWEEACSSENEAVLVVPNNKIYHL-----KPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENVNN 139 (299)
Q Consensus 65 t~Aiq~Ai~~a~~~~gg~~v~iP~G~~Y~~-----~~l~l~~p~~snvtl~~~g~l~~~~~~~~~~~~~~~~i~~~~~~n 139 (299)
-+-|++|++ ++. .| .+|++-+| +|.- .||.+ ++.++|.++..-+.. ...+...+-..
T Consensus 15 ~~Ti~~A~~-~a~-~g-~~i~l~~G-tY~~~~ge~fPi~i----~~gVtl~G~~~~kG~----------~~il~~g~~~~ 76 (246)
T PF07602_consen 15 FKTITKALQ-AAQ-PG-DTIQLAPG-TYSEATGETFPIII----KPGVTLIGNESNKGQ----------IDILITGGGTG 76 (246)
T ss_pred HHHHHHHHH-hCC-CC-CEEEECCc-eeccccCCcccEEe----cCCeEEeecccCCCc----------ceEEecCCceE
Confidence 456999995 343 34 69999999 9964 36778 789998876321111 00011111112
Q ss_pred EEEEeceEEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcC---CCceEEEeceeeEEEEeEEEECCCCCCCCC
Q 043061 140 FRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNS---QKMHLTFQYCVNVRALNLLVIAPGNSPNTD 216 (299)
Q Consensus 140 i~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns---~~~~i~~~~s~nv~i~~~~I~~~~~~~~~D 216 (299)
++|+| .+...- ...+.+....+.+|+++++.|+ .+.++++..+ +.+|+|++|.. ...+
T Consensus 77 ~~I~g------~~~~~~--------~qn~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~----~~~~ 137 (246)
T PF07602_consen 77 PTISG------GGPDLS--------GQNVTIILANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTN----NGRE 137 (246)
T ss_pred EeEec------cCcccc--------ceeEEEEecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEEC----Cccc
Confidence 23333 332100 1146677788999999999998 4556888777 99999999997 3467
Q ss_pred eeeeece------ecEEEEeeEEEcCCccEEecCCc--EeEEEEeeEEcC-CceEEE
Q 043061 217 GIHVTGT------QNILIKNCVIRTGDDCISIVSGS--KNVRATDIICGP-GHGISI 264 (299)
Q Consensus 217 Gi~~~~s------~~v~I~n~~i~~gDD~iai~sgs--~ni~I~n~~~~~-~~Gi~i 264 (299)
||.+.+. .+..|.++.+.....++++.... ....|+|+.+.. ..||.+
T Consensus 138 GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~i~~~~~~~~n~I~NN~I~~N~~Gi~~ 194 (246)
T PF07602_consen 138 GIFVTGTSANPGINGNVISGNSIYFNKTGISISDNAAPVENKIENNIIENNNIGIVA 194 (246)
T ss_pred cEEEEeeecCCcccceEeecceEEecCcCeEEEcccCCccceeeccEEEeCCcCeEe
Confidence 8876544 35566666666666677776532 224678888764 447664
No 29
>smart00656 Amb_all Amb_all domain.
Probab=98.52 E-value=1.5e-06 Score=74.29 Aligned_cols=99 Identities=17% Similarity=0.252 Sum_probs=49.2
Q ss_pred EEEEccCcEEEEeEEEEcCCCceEEEeceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEcC----------C
Q 043061 168 VTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTG----------D 237 (299)
Q Consensus 168 i~~~~~~nv~I~~v~i~ns~~~~i~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~g----------D 237 (299)
|.+..++||.|++|+|++.... ...+.|+|.+.++++|.|++|+|..+ |
T Consensus 34 l~i~~~~NVIirnl~i~~~~~~---------------------~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D 92 (190)
T smart00656 34 LTIKSVSNVIIRNLTIHDPKPV---------------------YGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYD 92 (190)
T ss_pred EEEEecceEEEeCCEEECCccC---------------------CCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCC
Confidence 5555566666666666654321 01244556655556666666666544 3
Q ss_pred ccEEecCCcEeEEEEeeEEcCCc-eEEEeecCCCCCcccEEEEEEEeeEEeC
Q 043061 238 DCISIVSGSKNVRATDIICGPGH-GISIGSLGAGNSEAFVSNVLVNRARLSG 288 (299)
Q Consensus 238 D~iai~sgs~ni~I~n~~~~~~~-Gi~igs~~~~~~~~~v~nv~i~n~~~~~ 288 (299)
..+.++.++.+++|.+|.|...+ |.-+|+...... ....+|++.+|.+.+
T Consensus 93 ~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~-~~~~~vT~h~N~~~~ 143 (190)
T smart00656 93 GLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTD-DGKMRVTIAHNYFGN 143 (190)
T ss_pred ccEEECcccccEEEECceEecCCEEEEEccCCCccc-cccceEEEECcEEcC
Confidence 33455555566666666665433 444443211110 113345555555544
No 30
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=98.44 E-value=1.9e-06 Score=74.26 Aligned_cols=76 Identities=25% Similarity=0.386 Sum_probs=45.5
Q ss_pred CCCCeeeeeceecEEEEeeEEEcC---------CccEEecCCcEeEEEEeeEEcCCc-eEEEeecCCCCCcccEEEEEEE
Q 043061 213 PNTDGIHVTGTQNILIKNCVIRTG---------DDCISIVSGSKNVRATDIICGPGH-GISIGSLGAGNSEAFVSNVLVN 282 (299)
Q Consensus 213 ~~~DGi~~~~s~~v~I~n~~i~~g---------DD~iai~sgs~ni~I~n~~~~~~~-Gi~igs~~~~~~~~~v~nv~i~ 282 (299)
...|+|.+..+++|.|++|++..+ |..+.++.++.+|+|.+|.|...+ +.-+|+......... .+|++.
T Consensus 73 ~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~h 151 (200)
T PF00544_consen 73 SDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFH 151 (200)
T ss_dssp CS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEE
T ss_pred cCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCC-ceEEEE
Confidence 456777777777888888887654 445777777788888888776532 444555322212233 777777
Q ss_pred eeEEeCC
Q 043061 283 RARLSGT 289 (299)
Q Consensus 283 n~~~~~~ 289 (299)
+|.+.++
T Consensus 152 hN~f~~~ 158 (200)
T PF00544_consen 152 HNYFANT 158 (200)
T ss_dssp S-EEEEE
T ss_pred eEEECch
Confidence 7777653
No 31
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.41 E-value=5.3e-06 Score=78.33 Aligned_cols=77 Identities=17% Similarity=0.213 Sum_probs=53.8
Q ss_pred eEEEEccCcEEEEeEEEEcCC------CceEEEeceeeEEEEeEEEECCC-C-----------------CCCCCeeeeec
Q 043061 167 AVTFYGCKNVRVSSLRFRNSQ------KMHLTFQYCVNVRALNLLVIAPG-N-----------------SPNTDGIHVTG 222 (299)
Q Consensus 167 ~i~~~~~~nv~I~~v~i~ns~------~~~i~~~~s~nv~i~~~~I~~~~-~-----------------~~~~DGi~~~~ 222 (299)
++.-..+++|+|++++|.++. ...|.+..|++++|++|+|.... . +....+|+++.
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~lw~ 187 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVSFD 187 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEEec
Confidence 466778999999999999876 33688899999999999999742 1 01122344444
Q ss_pred eecEEEEeeEEEc-CCccEEec
Q 043061 223 TQNILIKNCVIRT-GDDCISIV 243 (299)
Q Consensus 223 s~~v~I~n~~i~~-gDD~iai~ 243 (299)
+++++|++++|.. .|++|.+.
T Consensus 188 S~g~~V~~N~I~g~RD~gi~i~ 209 (455)
T TIGR03808 188 ALGLIVARNTIIGANDNGIEIL 209 (455)
T ss_pred cCCCEEECCEEEccCCCCeEEE
Confidence 4477777777654 34556554
No 32
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.29 E-value=6.4e-05 Score=70.91 Aligned_cols=45 Identities=16% Similarity=0.313 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHhhcCCccEEEecCCeeEEeeeeeeeCC--CccceEEEEe
Q 043061 64 DSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPITFSGP--CKSDLTMKIY 112 (299)
Q Consensus 64 dt~Aiq~Ai~~a~~~~gg~~v~iP~G~~Y~~~~l~l~~p--~~snvtl~~~ 112 (299)
+.++||+||+. +. +| .+|+++.| +|.-..|.+.+. .-..+||+.+
T Consensus 3 s~~~lq~Ai~~-a~-pG-D~I~L~~G-ty~~~~i~~~~~GT~~~PItl~Ae 49 (425)
T PF14592_consen 3 SVAELQSAIDN-AK-PG-DTIVLADG-TYKDVEIVFKGSGTAAKPITLRAE 49 (425)
T ss_dssp SHHHHHHHHHH----TT--EEEE-SE-EEET-EEEE-S--BTTB-EEEEES
T ss_pred CHHHHHHHHHh-CC-CC-CEEEECCc-eeecceEEEEecccCCCCEEEEec
Confidence 56899999964 43 44 79999999 997445555421 1224666654
No 33
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.20 E-value=9.2e-06 Score=71.19 Aligned_cols=105 Identities=17% Similarity=0.262 Sum_probs=73.3
Q ss_pred EEEccCcEEEEeEEEEcCCCceEEEeceeeEEEEeEEEECCCCCCC-----CCeeee------eceecEEEEeeEEEcCC
Q 043061 169 TFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGNSPN-----TDGIHV------TGTQNILIKNCVIRTGD 237 (299)
Q Consensus 169 ~~~~~~nv~I~~v~i~ns~~~~i~~~~s~nv~i~~~~I~~~~~~~~-----~DGi~~------~~s~~v~I~n~~i~~gD 237 (299)
.|+.|++++|+|++|.+++-. +..|++|+++|+.+.+.....+ -||+.+ ++++||.|+|+++.+-|
T Consensus 93 ~fR~~~~i~L~nv~~~~A~Et---~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKD 169 (277)
T PF12541_consen 93 MFRECSNITLENVDIPDADET---LWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKD 169 (277)
T ss_pred HhhcccCcEEEeeEeCCCccc---CEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEeccc
Confidence 456788888888888777743 2357777777777754332222 334433 47999999999998876
Q ss_pred ccEEecCCcEeEEEEeeEEcCCceEEEeecCCCCCcccEEEEEEEeeEEeCCce
Q 043061 238 DCISIVSGSKNVRATDIICGPGHGISIGSLGAGNSEAFVSNVLVNRARLSGTTN 291 (299)
Q Consensus 238 D~iai~sgs~ni~I~n~~~~~~~Gi~igs~~~~~~~~~v~nv~i~n~~~~~~~~ 291 (299)
|++. ++||+|.|..+.+- .+|=. -+|+++.||++.+++-
T Consensus 170 ---AFWn-~eNVtVyDS~i~GE---YLgW~--------SkNltliNC~I~g~Qp 208 (277)
T PF12541_consen 170 ---AFWN-CENVTVYDSVINGE---YLGWN--------SKNLTLINCTIEGTQP 208 (277)
T ss_pred ---cccc-CCceEEEcceEeee---EEEEE--------cCCeEEEEeEEeccCc
Confidence 4555 89999999887643 11111 4689999999998753
No 34
>smart00656 Amb_all Amb_all domain.
Probab=98.09 E-value=0.00025 Score=60.55 Aligned_cols=157 Identities=15% Similarity=0.100 Sum_probs=98.7
Q ss_pred eeeeeeCCCccceEEEEe---eEEEEeeccCCCCCCCceeEEEeeeecEEEEeceEEeCCCccc-ccccccCCCceeEEE
Q 043061 95 KPITFSGPCKSDLTMKIY---GTIKASVRLSDYSRDPRHWLVFENVNNFRVEGGGTIDGNGKVW-WRKSCKVNKSLAVTF 170 (299)
Q Consensus 95 ~~l~l~~p~~snvtl~~~---g~l~~~~~~~~~~~~~~~~i~~~~~~ni~I~G~G~idG~g~~~-w~~~~~~~~~~~i~~ 170 (299)
.+|.+ +|+.||.+. ++|+.. -|.+.+++||.|+. -++.+-.... |... +|.+
T Consensus 10 ~~i~v----~snkTI~G~~~~~~i~g~------------gl~i~~~~NVIirn-l~i~~~~~~~~~~~D-------~i~~ 65 (190)
T smart00656 10 GTIII----NSNKTIDGRGSKVEIKGG------------GLTIKSVSNVIIRN-LTIHDPKPVYGSDGD-------AISI 65 (190)
T ss_pred ceEEe----CCCCEEEecCCCcEEEee------------EEEEEecceEEEeC-CEEECCccCCCCCCC-------EEEE
Confidence 46777 899999876 344332 26677789999998 5555432211 2211 6888
Q ss_pred EccCcEEEEeEEEEcCC---------CceEEE-eceeeEEEEeEEEECCCCCCCCCeeeeec--------eecEEEEeeE
Q 043061 171 YGCKNVRVSSLRFRNSQ---------KMHLTF-QYCVNVRALNLLVIAPGNSPNTDGIHVTG--------TQNILIKNCV 232 (299)
Q Consensus 171 ~~~~nv~I~~v~i~ns~---------~~~i~~-~~s~nv~i~~~~I~~~~~~~~~DGi~~~~--------s~~v~I~n~~ 232 (299)
..+++|.|+.|+|.... --.+.+ ..++++++++|.+..... |.=+.+ ..+|++.+|.
T Consensus 66 ~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~-----~~liG~~d~~~~~~~~~vT~h~N~ 140 (190)
T smart00656 66 DGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWK-----VMLLGHSDSDTDDGKMRVTIAHNY 140 (190)
T ss_pred eCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCE-----EEEEccCCCccccccceEEEECcE
Confidence 99999999999998862 122333 357889999999875211 111111 2379999999
Q ss_pred EEcC-CccEEecCCcEeEEEEeeEEcCCceEEEeecCCCCCcccEEEEEEEeeEEeCC
Q 043061 233 IRTG-DDCISIVSGSKNVRATDIICGPGHGISIGSLGAGNSEAFVSNVLVNRARLSGT 289 (299)
Q Consensus 233 i~~g-DD~iai~sgs~ni~I~n~~~~~~~Gi~igs~~~~~~~~~v~nv~i~n~~~~~~ 289 (299)
+.+. ..+=.+..+ .+.+-|+.+.+.++.+++.... ..+.+|++.|.+.
T Consensus 141 ~~~~~~R~P~~r~g--~~hv~NN~~~n~~~~~~~~~~~-------~~v~~E~N~F~~~ 189 (190)
T smart00656 141 FGNLRQRAPRVRFG--YVHVYNNYYTGWTSYAIGGRMG-------ATILSEGNYFEAP 189 (190)
T ss_pred EcCcccCCCcccCC--EEEEEeeEEeCcccEeEecCCC-------cEEEEECeEEECC
Confidence 8653 222223333 6888888887765555543322 2667888877764
No 35
>PLN02480 Probable pectinesterase
Probab=98.03 E-value=0.00044 Score=64.09 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=33.2
Q ss_pred CCcccHHHHHHHHHHHhhcCC--ccEEEecCCeeEEeeeeeeeCCCccceEEEEee
Q 043061 60 DGTDDSKAFMEAWEEACSSEN--EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYG 113 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~~g--g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g 113 (299)
||..|-.-||+||+ +++... ..+|+|.+| +|. +.+.+.- .+.+++|++++
T Consensus 55 ~G~g~f~TIQ~AId-aap~~~~~~~~I~Ik~G-vY~-E~V~I~~-~kp~ItL~G~g 106 (343)
T PLN02480 55 NGKGDFTSVQSAID-AVPVGNSEWIIVHLRKG-VYR-EKVHIPE-NKPFIFMRGNG 106 (343)
T ss_pred CCCCCcccHHHHHh-hCccCCCceEEEEEcCc-EEE-EEEEECC-CCceEEEEecC
Confidence 55567888999996 454432 125889999 997 6666621 14568887664
No 36
>PLN02773 pectinesterase
Probab=98.00 E-value=0.0018 Score=59.36 Aligned_cols=130 Identities=15% Similarity=0.199 Sum_probs=68.9
Q ss_pred CeEEEeecCCCCCCCcccHHHHHHHHHHHhhcCC--ccEEEecCCeeEEeeeeeeeCCCccceEEEEee---EEEEeecc
Q 043061 47 TKIVNVDDFEAKADGTDDSKAFMEAWEEACSSEN--EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYG---TIKASVRL 121 (299)
Q Consensus 47 ~~~~~v~d~Ga~gdg~Ddt~Aiq~Ai~~a~~~~g--g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g---~l~~~~~~ 121 (299)
+.++.|.. ||+-|-.-||+||+ +++... .-+|+|.+| +|. ..|.+.- -+.+++|.+++ ++..-.+.
T Consensus 4 ~~~i~Va~-----dGsGdf~TIq~Aid-a~P~~~~~~~~I~Ik~G-~Y~-E~V~I~~-~k~~itl~G~~~~~TiI~~~~~ 74 (317)
T PLN02773 4 RRVLRVAQ-----DGSGDYCTVQDAID-AVPLCNRCRTVIRVAPG-VYR-QPVYVPK-TKNLITLAGLSPEATVLTWNNT 74 (317)
T ss_pred ceEEEECC-----CCCCCccCHHHHHh-hchhcCCceEEEEEeCc-eEE-EEEEECc-CCccEEEEeCCCCceEEEccCc
Confidence 34555543 55445778999996 454432 247899999 997 4555521 14578888763 22211110
Q ss_pred CCCCCCCceeEEEeeeecEEEEeceEEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCc----eEEE-ece
Q 043061 122 SDYSRDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKM----HLTF-QYC 196 (299)
Q Consensus 122 ~~~~~~~~~~i~~~~~~ni~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~----~i~~-~~s 196 (299)
.. ...-.+.....|.+ .. ..+-.+..++++.++||+|+|+... .+-+ ...
T Consensus 75 a~---------------~~~~~~~~~~~g~g-----T~-----~SaTv~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~g 129 (317)
T PLN02773 75 AT---------------KIDHHQASRVIGTG-----TF-----GCGTVIVEGEDFIAENITFENSAPEGSGQAVAIRVTA 129 (317)
T ss_pred cc---------------cccccccccccCcC-----cc-----CceEEEEECCCeEEEeeEEEeCCCCCCCcEEEEEecC
Confidence 00 00000000000000 00 0134555678889999999888432 2222 346
Q ss_pred eeEEEEeEEEECCC
Q 043061 197 VNVRALNLLVIAPG 210 (299)
Q Consensus 197 ~nv~i~~~~I~~~~ 210 (299)
+.+.+.+|++....
T Consensus 130 Dr~~f~~c~~~G~Q 143 (317)
T PLN02773 130 DRCAFYNCRFLGWQ 143 (317)
T ss_pred ccEEEEccEeeccc
Confidence 78888888888643
No 37
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=97.95 E-value=0.0014 Score=62.08 Aligned_cols=178 Identities=12% Similarity=0.139 Sum_probs=94.9
Q ss_pred CCCCcccHHHHHHHHHHHhhcCC--ccEEEecCCeeEEeeeeeeeCCCccceEEEEee-----E-EEEee----ccCCCC
Q 043061 58 KADGTDDSKAFMEAWEEACSSEN--EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYG-----T-IKASV----RLSDYS 125 (299)
Q Consensus 58 ~gdg~Ddt~Aiq~Ai~~a~~~~g--g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g-----~-l~~~~----~~~~~~ 125 (299)
.+||.-|-.-||+||+++.+... -.+|+|.+| +|.= .+.+.. .+.+++|+++| + |.... .+..|.
T Consensus 87 a~dGsGdf~TIQaAIdAa~~~~~~~r~~I~Ik~G-vY~E-kV~Ip~-~kp~ItL~G~G~~~~~TvIt~~~~~~~~~~~~~ 163 (422)
T PRK10531 87 AGTQGVTHTTVQAAVDAAIAKRTNKRQYIAVMPG-TYQG-TVYVPA-AAPPITLYGTGEKPIDVKIGLALDGEMSPADWR 163 (422)
T ss_pred CCCCCCCccCHHHHHhhccccCCCceEEEEEeCc-eeEE-EEEeCC-CCceEEEEecCCCCCceEEEecCcccccccccc
Confidence 45675567789999974443322 247899999 9963 344410 16789998764 2 22221 011111
Q ss_pred ----------CCCceeEEEeeeecEEEEeceEEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCC-------
Q 043061 126 ----------RDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQK------- 188 (299)
Q Consensus 126 ----------~~~~~~i~~~~~~ni~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~------- 188 (299)
...+.|+.++.+.+- .| .. +. ....+.....++++..+||+|+|+..
T Consensus 164 ~~~~~~g~~~~~~p~~y~~d~~~~~--~~------~~---~g-----T~~SATv~v~ad~F~a~NLTf~Ntag~~~~~~~ 227 (422)
T PRK10531 164 ANVNPRGKYMPGKPAWYMYDSCQSK--RA------AT---IG-----TLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGN 227 (422)
T ss_pred ccccccccccccccccccccccccc--cC------CC---cC-----ceeeEEEEEECCCEEEEeeEEEeCCCCCCCCCc
Confidence 011234444332110 00 00 00 00115666788999999999999953
Q ss_pred -ceEEE-eceeeEEEEeEEEECCCCCCCCC------eeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEc
Q 043061 189 -MHLTF-QYCVNVRALNLLVIAPGNSPNTD------GIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICG 257 (299)
Q Consensus 189 -~~i~~-~~s~nv~i~~~~I~~~~~~~~~D------Gi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~ 257 (299)
..+-+ ...+.+.+.+|+|....|.--.+ +.......+..+++|+|+..=|-| .|....+++||++.
T Consensus 228 ~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~VDFI---FG~g~AvFenC~I~ 301 (422)
T PRK10531 228 HPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEGDVDFV---FGRGAVVFDNTEFR 301 (422)
T ss_pred ceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEeecccEE---ccCceEEEEcCEEE
Confidence 22222 46789999999998744321110 110111225677777776543322 23456667777663
No 38
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.94 E-value=0.00071 Score=61.46 Aligned_cols=113 Identities=16% Similarity=0.101 Sum_probs=80.3
Q ss_pred eeecEEEEeceEEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCceEEEeceeeEEEEeEEEECCCC---C
Q 043061 136 NVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGN---S 212 (299)
Q Consensus 136 ~~~ni~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~s~nv~i~~~~I~~~~~---~ 212 (299)
..++++|+| -++.+.|..-....+. .+.-..+..-.|+...+..+. ++|.+..+.++.|++.+|....+ .
T Consensus 75 ~aP~~~v~G-l~vr~sg~~lp~m~ag-----I~v~~~at~A~Vr~N~l~~n~-~Gi~l~~s~d~~i~~n~i~G~~~~r~~ 147 (408)
T COG3420 75 AAPDVIVEG-LTVRGSGRSLPAMDAG-----IFVGRTATGAVVRHNDLIGNS-FGIYLHGSADVRIEGNTIQGLADLRVA 147 (408)
T ss_pred eCCCceeee-EEEecCCCCcccccce-----EEeccCcccceEEcccccccc-eEEEEeccCceEEEeeEEeeccccchh
Confidence 357788887 5666655433222221 233345666777777776554 78999999999999999987655 3
Q ss_pred CCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEE
Q 043061 213 PNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIIC 256 (299)
Q Consensus 213 ~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~ 256 (299)
...+||+++.+.+.+|..+.+.-+.|||.... |++-.|+++.+
T Consensus 148 ~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~-S~~~~~~gnr~ 190 (408)
T COG3420 148 ERGNGIYVYNAPGALVVGNDISYGRDGIYSDT-SQHNVFKGNRF 190 (408)
T ss_pred hccCceEEEcCCCcEEEcCccccccceEEEcc-cccceecccch
Confidence 47889999999999999999999999998877 33444444443
No 39
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=97.84 E-value=0.00065 Score=60.51 Aligned_cols=208 Identities=20% Similarity=0.321 Sum_probs=106.9
Q ss_pred CCCCCCCeEEEeecCCCCCCCcccHHHHHHHHHHHhhcCCccEEEecCCeeEE-e-eeeeeeCCCccceEEEEeeEEEEe
Q 043061 41 SAPASSTKIVNVDDFEAKADGTDDSKAFMEAWEEACSSENEAVLVVPNNKIYH-L-KPITFSGPCKSDLTMKIYGTIKAS 118 (299)
Q Consensus 41 ~~~~~~~~~~~v~d~Ga~gdg~Ddt~Aiq~Ai~~a~~~~gg~~v~iP~G~~Y~-~-~~l~l~~p~~snvtl~~~g~l~~~ 118 (299)
+.+.++...+++.||-. .|--++|..|+.+ +.+|++|+|-+.. + .++.+ +.+-||.+.|.|.+.
T Consensus 26 ~ra~~~~~~vni~dy~~----~dwiasfkqaf~e------~qtvvvpagl~cenint~ifi----p~gktl~v~g~l~gn 91 (464)
T PRK10123 26 ARALPARQSVNINDYNP----HDWIASFKQAFSE------GQTVVVPAGLVCDNINTGIFI----PPGKTLHILGSLRGN 91 (464)
T ss_pred hhhcCCCceeehhhcCc----ccHHHHHHHHhcc------CcEEEecCccEecccccceEe----CCCCeEEEEEEeecC
Confidence 34445788999999942 5667788888842 2699999994432 3 34666 778888888877765
Q ss_pred eccCCCCCCCceeEEEeeeecEEEEec--eEEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCC-CceEEEe-
Q 043061 119 VRLSDYSRDPRHWLVFENVNNFRVEGG--GTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQ-KMHLTFQ- 194 (299)
Q Consensus 119 ~~~~~~~~~~~~~i~~~~~~ni~I~G~--G~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~-~~~i~~~- 194 (299)
.. ..++.-++| .+.|. |.+.. ..+.+ ..+++.|+++.+..-. -..|.+-
T Consensus 92 gr--------grfvlqdg~---qv~ge~~g~~hn---------------itldv-rgsdc~ikgiamsgfgpvtqiyigg 144 (464)
T PRK10123 92 GR--------GRFVLQDGS---QVTGEEGGSMHN---------------ITLDV-RGSDCTIKGLAMSGFGPVTQIYIGG 144 (464)
T ss_pred Cc--------eeEEEecCC---EeecCCCceeee---------------EEEee-ccCceEEeeeeecccCceeEEEEcC
Confidence 31 222222222 22221 11110 01111 2245556665553211 1112221
Q ss_pred ----ceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEc-CCcc----EEecCC---cEeEEEEeeEEcCC---
Q 043061 195 ----YCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRT-GDDC----ISIVSG---SKNVRATDIICGPG--- 259 (299)
Q Consensus 195 ----~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~-gDD~----iai~sg---s~ni~I~n~~~~~~--- 259 (299)
--+|++|+++++...-.+--..|+|-. -..+.|.||.|.. ..|+ ++|... -++=+|+++.|.++
T Consensus 145 k~prvmrnl~id~itv~~anyailrqgfhnq-~dgaritn~rfs~lqgdaiewnvaindr~ilisdhvie~inctngkin 223 (464)
T PRK10123 145 KNKRVMRNLTIDNLTVSHANYAILRQGFHNQ-IIGANITNCKFSDLQGDAIEWNVAINDRDILISDHVIERINCTNGKIN 223 (464)
T ss_pred CCchhhhccEEccEEEeeccHHHHhhhhhhc-cccceeeccccccccCceEEEEEEecccceeeehheheeecccCCccc
Confidence 124566666666532111122333322 1355667777654 2233 233221 13335566667665
Q ss_pred ceEEEeecCCC-----CCcccEEEEEEEeeEEeCCc
Q 043061 260 HGISIGSLGAG-----NSEAFVSNVLVNRARLSGTT 290 (299)
Q Consensus 260 ~Gi~igs~~~~-----~~~~~v~nv~i~n~~~~~~~ 290 (299)
.||.||-.|+. .+...|.|..+-|++=.+|.
T Consensus 224 wgigiglagstydn~ype~q~vknfvvanitgs~cr 259 (464)
T PRK10123 224 WGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCR 259 (464)
T ss_pred ceeeeeeccccccCCCchhhhhhhEEEEeccCcChh
Confidence 48888766542 34455666666666655543
No 40
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.77 E-value=0.00053 Score=59.04 Aligned_cols=87 Identities=24% Similarity=0.284 Sum_probs=47.5
Q ss_pred EccCcEEEEeEEEEcC---------------CCceEEEeceeeEEEEeEEEECCCC---CCCCCe-eeee-ceecEEEEe
Q 043061 171 YGCKNVRVSSLRFRNS---------------QKMHLTFQYCVNVRALNLLVIAPGN---SPNTDG-IHVT-GTQNILIKN 230 (299)
Q Consensus 171 ~~~~nv~I~~v~i~ns---------------~~~~i~~~~s~nv~i~~~~I~~~~~---~~~~DG-i~~~-~s~~v~I~n 230 (299)
..++||.|++++|++. ..-.+.+..+++|.|++|++..... ....|| +++. .+.+|+|.+
T Consensus 43 ~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~ 122 (200)
T PF00544_consen 43 KGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISN 122 (200)
T ss_dssp ESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES
T ss_pred cCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEc
Confidence 3677777777777762 2334677777777777777775311 111444 4554 567777777
Q ss_pred eEEEcCCccEEecCC-------cEeEEEEeeEEc
Q 043061 231 CVIRTGDDCISIVSG-------SKNVRATDIICG 257 (299)
Q Consensus 231 ~~i~~gDD~iai~sg-------s~ni~I~n~~~~ 257 (299)
|.|.+.+.+..+++. ..++++-+|.+.
T Consensus 123 n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~ 156 (200)
T PF00544_consen 123 NIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFA 156 (200)
T ss_dssp -EEEEEEETCEESSCTTCGGGTTEEEEEES-EEE
T ss_pred hhccccccccccCCCCCccccCCceEEEEeEEEC
Confidence 777654444434332 246666666663
No 41
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.77 E-value=0.0046 Score=60.85 Aligned_cols=152 Identities=14% Similarity=0.185 Sum_probs=81.4
Q ss_pred CCcccHHHHHHHHHHHhhcCC--ccEEEecCCeeEEeeeeeeeCCCccceEEEEeeEEEEeeccCCCCCCCceeEEEeee
Q 043061 60 DGTDDSKAFMEAWEEACSSEN--EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENV 137 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~~g--g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~l~~~~~~~~~~~~~~~~i~~~~~ 137 (299)
||.-|-.-||+||+ +++... .-+|+|.+| +|. ..+.+.- .+.+++|.++|.
T Consensus 237 dGsG~f~TIq~Ai~-a~p~~~~~r~vI~Ik~G-vY~-E~V~i~~-~k~~i~l~G~g~----------------------- 289 (541)
T PLN02416 237 DGTGNFSTITDAIN-FAPNNSNDRIIIYVREG-VYE-ENVEIPI-YKTNIVLIGDGS----------------------- 289 (541)
T ss_pred CCCCCccCHHHHHH-hhhhcCCceEEEEEeCc-eeE-EEEecCC-CCccEEEEecCC-----------------------
Confidence 55455777999996 454432 237899999 996 3444410 157888887752
Q ss_pred ecEEEEece-EEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCc----eEEE-eceeeEEEEeEEEECCCC
Q 043061 138 NNFRVEGGG-TIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKM----HLTF-QYCVNVRALNLLVIAPGN 211 (299)
Q Consensus 138 ~ni~I~G~G-~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~----~i~~-~~s~nv~i~~~~I~~~~~ 211 (299)
+...|+++. ..+| |... ..+-.....+++..+|++|+|.... .+-+ ...+.+.+.+|+|....|
T Consensus 290 ~~TiIt~~~~~~~g-----~~T~-----~saT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QD 359 (541)
T PLN02416 290 DVTFITGNRSVVDG-----WTTF-----RSATLAVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQD 359 (541)
T ss_pred CceEEeCCCccCCC-----CCcc-----ceEEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccc
Confidence 011111110 0011 1100 0133444567888888888877532 1222 356778888888876433
Q ss_pred CCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEc
Q 043061 212 SPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICG 257 (299)
Q Consensus 212 ~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~ 257 (299)
-+... +.+...++|+|...=| +--|.....++||++.
T Consensus 360 -----TLy~~-~~Rqyy~~C~I~GtVD---FIFG~a~avfq~c~i~ 396 (541)
T PLN02416 360 -----TLYVH-SFRQFYRECDIYGTID---YIFGNAAVVFQACNIV 396 (541)
T ss_pred -----hhccC-CCceEEEeeEEeeccc---eeeccceEEEeccEEE
Confidence 22211 2345667777764323 2233456666666663
No 42
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.76 E-value=0.0048 Score=61.05 Aligned_cols=151 Identities=19% Similarity=0.199 Sum_probs=80.6
Q ss_pred CCcccHHHHHHHHHHHhhcC-----CccEEEecCCeeEEeeeeeeeCCCccceEEEEeeEEEEeeccCCCCCCCceeEEE
Q 043061 60 DGTDDSKAFMEAWEEACSSE-----NEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVF 134 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~~-----gg~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~l~~~~~~~~~~~~~~~~i~~ 134 (299)
||+-+-.-||+||+ +++.. +.-+|+|.+| +|. ..+.+.- .+.+++|.++|.
T Consensus 257 dGsG~f~TIq~Av~-a~p~~~~~~~~~~vI~Ik~G-~Y~-E~V~i~~-~k~~i~l~G~g~-------------------- 312 (566)
T PLN02713 257 NGTGNFTTINDAVA-AAPNNTDGSNGYFVIYVTAG-VYE-EYVSIPK-NKKYLMMIGDGI-------------------- 312 (566)
T ss_pred CCCCCCCCHHHHHH-hhhcccCCCCceEEEEEcCc-EEE-EEEEecC-CCceEEEEecCC--------------------
Confidence 56555777999996 55442 1247999999 996 3444410 156788887751
Q ss_pred eeeecEEEEece-EEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCc----eEEE-eceeeEEEEeEEEEC
Q 043061 135 ENVNNFRVEGGG-TIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKM----HLTF-QYCVNVRALNLLVIA 208 (299)
Q Consensus 135 ~~~~ni~I~G~G-~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~----~i~~-~~s~nv~i~~~~I~~ 208 (299)
...+|+|+. ..+| |..+ ..+-.....+++..+|++|+|.... .+-+ ...+...+.+|+|..
T Consensus 313 ---~~TiIt~~~~~~~g-----~~T~-----~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G 379 (566)
T PLN02713 313 ---NQTVITGNRSVVDG-----WTTF-----NSATFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEA 379 (566)
T ss_pred ---CCcEEEcCCcccCC-----Cccc-----cceeEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeecc
Confidence 111111110 0011 1100 0134444567888888888886432 2222 456777888888876
Q ss_pred CCCCCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEE
Q 043061 209 PGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIIC 256 (299)
Q Consensus 209 ~~~~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~ 256 (299)
. -|-+.... .+-..++|+|+..=| +--|.....++||.+
T Consensus 380 ~-----QDTLy~~~-~Rqyy~~C~I~GtVD---FIFG~a~avfq~C~i 418 (566)
T PLN02713 380 Y-----QDTLYTHS-LRQFYRECDIYGTVD---FIFGNAAVVFQNCNL 418 (566)
T ss_pred C-----CcceEECC-CCEEEEeeEEecccc---eecccceEEEeccEE
Confidence 3 23333222 245666666654322 223345566666665
No 43
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.76 E-value=0.0084 Score=58.52 Aligned_cols=154 Identities=14% Similarity=0.155 Sum_probs=81.3
Q ss_pred CCcccHHHHHHHHHHHhhcC--CccEEEecCCeeEEeeeeeeeCCCccceEEEEeeEEEEeeccCCCCCCCceeEEEeee
Q 043061 60 DGTDDSKAFMEAWEEACSSE--NEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENV 137 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~~--gg~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~l~~~~~~~~~~~~~~~~i~~~~~ 137 (299)
||+-|-.-||+||+++.+.. ..-+|+|.+| +|. ..+.+.. .+.+++|.++|.
T Consensus 232 dGsG~f~TIq~AI~a~~~~~~~~r~vI~Ik~G-vY~-E~V~I~~-~k~nItl~G~g~----------------------- 285 (529)
T PLN02170 232 DGSGTHKTIGEALLSTSLESGGGRTVIYLKAG-TYH-ENLNIPT-KQKNVMLVGDGK----------------------- 285 (529)
T ss_pred CCCCchhhHHHHHHhcccccCCceEEEEEeCC-eeE-EEEecCC-CCceEEEEEcCC-----------------------
Confidence 66556778999996433221 2357999999 996 3344410 157888887752
Q ss_pred ecEEEEeceEEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCc----eEEE-eceeeEEEEeEEEECCCCC
Q 043061 138 NNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKM----HLTF-QYCVNVRALNLLVIAPGNS 212 (299)
Q Consensus 138 ~ni~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~----~i~~-~~s~nv~i~~~~I~~~~~~ 212 (299)
+...|+|... .+.+ |... ..+-.....+++..+|++|+|.... .+-+ ...+...+.+|++....
T Consensus 286 ~~TiIt~~~~-~~~g---~~T~-----~SaTv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQ-- 354 (529)
T PLN02170 286 GKTVIVGSRS-NRGG---WTTY-----QTATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQ-- 354 (529)
T ss_pred CCeEEEeCCc-CCCC---Cccc-----cceEEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccC--
Confidence 1111111100 0000 0000 1134555667788888888877432 2222 45677788888887633
Q ss_pred CCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEc
Q 043061 213 PNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICG 257 (299)
Q Consensus 213 ~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~ 257 (299)
|-+.... .+-..++|+|...=| +--|.....++||++.
T Consensus 355 ---DTLy~~~-~Rqyy~~C~I~GtVD---FIFG~a~avFq~C~I~ 392 (529)
T PLN02170 355 ---DSLYTHS-KRQFYRETDITGTVD---FIFGNSAVVFQSCNIA 392 (529)
T ss_pred ---CcceeCC-CCEEEEeeEEccccc---eecccceEEEeccEEE
Confidence 3232222 244556676664322 2233345666666653
No 44
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=97.75 E-value=0.007 Score=59.19 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=33.5
Q ss_pred CCcccHHHHHHHHHHHhhcCC--ccEEEecCCeeEEeeeeeeeCCCccceEEEEee
Q 043061 60 DGTDDSKAFMEAWEEACSSEN--EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYG 113 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~~g--g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g 113 (299)
||.-+-.-||+||+ +++... .-+|+|.+| +|. ..+.+.- .+.+++|.++|
T Consensus 225 dGsG~f~TIq~Ai~-a~P~~~~~r~vI~Ik~G-vY~-E~V~I~~-~k~~itl~G~g 276 (530)
T PLN02933 225 DGTGNFTTINEAVS-AAPNSSETRFIIYIKGG-EYF-ENVELPK-KKTMIMFIGDG 276 (530)
T ss_pred CCCCCccCHHHHHH-hchhcCCCcEEEEEcCc-eEE-EEEEecC-CCceEEEEEcC
Confidence 55555778999996 454432 247999999 997 4555511 15678888775
No 45
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.75 E-value=0.0041 Score=61.08 Aligned_cols=153 Identities=14% Similarity=0.191 Sum_probs=82.4
Q ss_pred CCcccHHHHHHHHHHHhhcCC--ccEEEecCCeeEEeeeeeeeCCCccceEEEEeeEEEEeeccCCCCCCCceeEEEeee
Q 043061 60 DGTDDSKAFMEAWEEACSSEN--EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENV 137 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~~g--g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~l~~~~~~~~~~~~~~~~i~~~~~ 137 (299)
||.-+-.-||+||+ +++... .-+|+|.+| +|.=. +.+. ..+.+++|.++|.
T Consensus 239 dGsG~f~TIq~Av~-a~p~~~~~r~vI~Vk~G-vY~E~-V~I~-~~k~~i~l~G~g~----------------------- 291 (537)
T PLN02506 239 DGSGHYRTITEAIN-EAPNHSNRRYIIYVKKG-VYKEN-IDMK-KKKTNIMLVGDGI----------------------- 291 (537)
T ss_pred CCCCCccCHHHHHH-hchhcCCCcEEEEEeCC-eeeEE-Eecc-CCCceEEEEEcCC-----------------------
Confidence 66445778999996 454332 248999999 99542 2221 0156888887641
Q ss_pred ecEEEEeceEEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCc----eEEE-eceeeEEEEeEEEECCCCC
Q 043061 138 NNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKM----HLTF-QYCVNVRALNLLVIAPGNS 212 (299)
Q Consensus 138 ~ni~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~----~i~~-~~s~nv~i~~~~I~~~~~~ 212 (299)
....|++.... +.| |... ..+-....++++..+|++|+|.... .+-+ ...+++.+.+|+|....
T Consensus 292 ~~tiIt~~~~~-~~g---~~T~-----~saT~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~Q-- 360 (537)
T PLN02506 292 GQTVVTGNRNF-MQG---WTTF-----RTATVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQ-- 360 (537)
T ss_pred CCeEEEeCccc-cCC---CCcc-----cceEEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeccc--
Confidence 11111111000 000 0000 1134556678888888888887432 2222 45777888888887633
Q ss_pred CCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEc
Q 043061 213 PNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICG 257 (299)
Q Consensus 213 ~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~ 257 (299)
|-+.... .+-..++|+|...=| +--|.....++||++.
T Consensus 361 ---DTLy~~~-~rqyy~~C~I~GtVD---FIFG~a~avfq~C~i~ 398 (537)
T PLN02506 361 ---DTLYAHS-LRQFYRECEIYGTID---FIFGNGAAVLQNCKIY 398 (537)
T ss_pred ---ccceecC-CceEEEeeEEecccc---eEccCceeEEeccEEE
Confidence 3232222 245667777765323 2233455677777663
No 46
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=97.74 E-value=0.0041 Score=59.96 Aligned_cols=194 Identities=16% Similarity=0.181 Sum_probs=105.1
Q ss_pred cEEEecCCeeEEeeeeeeeCCCccceEEEEeeEEEEeecc------CCCCCC---------CceeEE---EeeeecEEEE
Q 043061 82 AVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRL------SDYSRD---------PRHWLV---FENVNNFRVE 143 (299)
Q Consensus 82 ~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~l~~~~~~------~~~~~~---------~~~~i~---~~~~~ni~I~ 143 (299)
..|||-+| .|.-+.+.+.+ ..+++.+.+-|+|.+..-. +.|... .-.++. ..+..++.+.
T Consensus 257 ~~VYlApG-AyVkGAf~~~~-~~~nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~ 334 (582)
T PF03718_consen 257 KWVYLAPG-AYVKGAFEYTD-TQQNVKITGRGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCE 334 (582)
T ss_dssp -EEEE-TT-EEEES-EEE----SSEEEEESSSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEE
T ss_pred cEEEEcCC-cEEEEEEEEcc-CCceEEEEeeEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEEE
Confidence 68999999 99989987752 1577777777888765421 122100 011232 3345677777
Q ss_pred eceEEeCCCcccccccccCCCceeEEEEccC----cEEEEeEEEEcCCCceEE-EeceeeEEEEeEEEECCCCCCCCCee
Q 043061 144 GGGTIDGNGKVWWRKSCKVNKSLAVTFYGCK----NVRVSSLRFRNSQKMHLT-FQYCVNVRALNLLVIAPGNSPNTDGI 218 (299)
Q Consensus 144 G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~----nv~I~~v~i~ns~~~~i~-~~~s~nv~i~~~~I~~~~~~~~~DGi 218 (299)
| -+|.-. .+| .+.+.+-. +..|++.++..+-+|.-+ ++-+.+-+|+||.+++ |.|+|
T Consensus 335 G-iTI~~p--P~~----------Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~nS~i~dcF~h~-----nDD~i 396 (582)
T PF03718_consen 335 G-ITINDP--PFH----------SMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYPNSTIRDCFIHV-----NDDAI 396 (582)
T ss_dssp S--EEE----SS-----------SEEEESSSGGGEEEEEEEEEEE---CTT----B--TT-EEEEEEEEE-----SS-SE
T ss_pred e-eEecCC--Ccc----------eEEecCCccccccceeeceeeeeeEEeccCCccccCCCeeeeeEEEe-----cCchh
Confidence 7 344321 112 35555433 589999999887776422 2334777889999998 89999
Q ss_pred eeeceecEEEEeeEEEcCCcc--EEecCC---cEeEEEEeeEEcC----------CceEEEeecC----CCCC----ccc
Q 043061 219 HVTGTQNILIKNCVIRTGDDC--ISIVSG---SKNVRATDIICGP----------GHGISIGSLG----AGNS----EAF 275 (299)
Q Consensus 219 ~~~~s~~v~I~n~~i~~gDD~--iai~sg---s~ni~I~n~~~~~----------~~Gi~igs~~----~~~~----~~~ 275 (299)
.+.. .++.|++|++-..+.+ |-++.. .+|+.|+|+.+-. ..+|---|-. +.+. .-.
T Consensus 397 KlYh-S~v~v~~~ViWk~~Ngpiiq~GW~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~t 475 (582)
T PF03718_consen 397 KLYH-SNVSVSNTVIWKNENGPIIQWGWTPRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMASTKTADPSTT 475 (582)
T ss_dssp E--S-TTEEEEEEEEEE-SSS-SEE--CS---EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS--BEEEEE
T ss_pred heee-cCcceeeeEEEecCCCCeEEeeccccccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCCCCCCcccc
Confidence 8887 5999999999764433 333222 4789999987621 2344332211 1111 335
Q ss_pred EEEEEEEeeEEeC-CceeEEEE
Q 043061 276 VSNVLVNRARLSG-TTNGVRIK 296 (299)
Q Consensus 276 v~nv~i~n~~~~~-~~~gi~ik 296 (299)
|++++|+|++..+ +..-+||+
T Consensus 476 i~~~~~~nv~~EG~~~~l~ri~ 497 (582)
T PF03718_consen 476 IRNMTFSNVRCEGMCPCLFRIY 497 (582)
T ss_dssp EEEEEEEEEEEECCE-ECEEE-
T ss_pred eeeEEEEeEEEecccceeEEEe
Confidence 6899999999998 44445554
No 47
>PLN02682 pectinesterase family protein
Probab=97.73 E-value=0.0065 Score=56.82 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=32.8
Q ss_pred CCcccHHHHHHHHHHHhhcCC--ccEEEecCCeeEEeeeeeeeCCCccceEEEEee
Q 043061 60 DGTDDSKAFMEAWEEACSSEN--EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYG 113 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~~g--g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g 113 (299)
||.-|-.-||+||+ +++... ..+|+|.+| +|. ..+.+.- .+.+++|+++|
T Consensus 77 ~gsGdf~TIQ~AId-avP~~~~~r~vI~Ik~G-~Y~-EkV~Ip~-~k~~Itl~G~g 128 (369)
T PLN02682 77 PAAGDFTTIQAAID-SLPVINLVRVVIKVNAG-TYR-EKVNIPP-LKAYITLEGAG 128 (369)
T ss_pred CCCCCccCHHHHHh-hccccCCceEEEEEeCc-eee-EEEEEec-cCceEEEEecC
Confidence 34445677999996 454332 247899999 996 3444410 16789998875
No 48
>PLN02665 pectinesterase family protein
Probab=97.71 E-value=0.0082 Score=56.17 Aligned_cols=57 Identities=23% Similarity=0.334 Sum_probs=35.9
Q ss_pred eEEEeecCCCCCCCcccHHHHHHHHHHHhhcCC--ccEEEecCCeeEEeeeeeeeCCCccceEEEEee
Q 043061 48 KIVNVDDFEAKADGTDDSKAFMEAWEEACSSEN--EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYG 113 (299)
Q Consensus 48 ~~~~v~d~Ga~gdg~Ddt~Aiq~Ai~~a~~~~g--g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g 113 (299)
.++-|.. ||.-|-.-||+||+ +++... .-+|+|.+| +|. ..+.+.- .+.+++|++++
T Consensus 68 ~~i~V~~-----dG~Gdf~TIq~AId-aiP~~~~~r~vI~Ik~G-vY~-EkV~Ip~-~kp~Itl~G~~ 126 (366)
T PLN02665 68 RIIKVRK-----DGSGDFKTITDAIK-SIPAGNTQRVIIDIGPG-EYN-EKITIDR-SKPFVTLYGSP 126 (366)
T ss_pred eEEEEcC-----CCCCCccCHHHHHh-hCcccCCceEEEEEeCc-EEE-EEEEecC-CCCEEEEEecC
Confidence 4555543 55445777999996 454432 237889999 997 3444410 15688888764
No 49
>PLN02671 pectinesterase
Probab=97.71 E-value=0.0082 Score=55.93 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=32.4
Q ss_pred CCcccHHHHHHHHHHHhhcCC--ccEEEecCCeeEEeeeeeeeCCCccceEEEEee
Q 043061 60 DGTDDSKAFMEAWEEACSSEN--EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYG 113 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~~g--g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g 113 (299)
||+-|-.-||+||+ +++... ..+|+|.+| +|. ..+.+.- .+.+++|++++
T Consensus 66 dGsGdf~TIQ~AId-avP~~~~~~~~I~Ik~G-vY~-EkV~I~~-~k~~Itl~G~g 117 (359)
T PLN02671 66 NGGGDSLTVQGAVD-MVPDYNSQRVKIYILPG-IYR-EKVLVPK-SKPYISFIGNE 117 (359)
T ss_pred CCCCCccCHHHHHH-hchhcCCccEEEEEeCc-eEE-EEEEECC-CCCeEEEEecC
Confidence 55445778999996 454322 247999999 996 3444410 16788888764
No 50
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=97.69 E-value=0.0055 Score=60.89 Aligned_cols=153 Identities=15% Similarity=0.163 Sum_probs=83.8
Q ss_pred CCcccHHHHHHHHHHHhhcCC--ccEEEecCCeeEEeeeeeeeCCCccceEEEEeeEEEEeeccCCCCCCCceeEEEeee
Q 043061 60 DGTDDSKAFMEAWEEACSSEN--EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENV 137 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~~g--g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~l~~~~~~~~~~~~~~~~i~~~~~ 137 (299)
||+-|-.-||+||+ +++... .-+|+|.+| +|.=+.+.+.- .+.+++|.++|.
T Consensus 279 dGsG~f~TIq~Ai~-a~P~~~~~r~vI~Ik~G-~Y~E~~v~i~~-~k~ni~l~G~g~----------------------- 332 (587)
T PLN02484 279 DGNGTFKTISEAIK-KAPEHSSRRTIIYVKAG-RYEENNLKVGR-KKTNLMFIGDGK----------------------- 332 (587)
T ss_pred CCCCCcccHHHHHH-hccccCCCcEEEEEeCC-EEEEEEEEECC-CCceEEEEecCC-----------------------
Confidence 55445677999996 554432 247899999 99764454410 156888887752
Q ss_pred ecEEEEeceE-EeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCc----eEEE-eceeeEEEEeEEEECCCC
Q 043061 138 NNFRVEGGGT-IDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKM----HLTF-QYCVNVRALNLLVIAPGN 211 (299)
Q Consensus 138 ~ni~I~G~G~-idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~----~i~~-~~s~nv~i~~~~I~~~~~ 211 (299)
....|+|.-. .++.+ . + ..+-.....+++..+||+|+|.... .+-+ ...+...+.+|+|....|
T Consensus 333 ~~TiIt~~~~~~~~~~-t-~--------~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QD 402 (587)
T PLN02484 333 GKTVITGGKSIFDNLT-T-F--------HTASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQD 402 (587)
T ss_pred CCeEEecCCcccCCCc-c-c--------ceEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCc
Confidence 1111111100 00000 0 0 0134445667888888888877532 2332 456778888888886432
Q ss_pred CCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEc
Q 043061 212 SPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICG 257 (299)
Q Consensus 212 ~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~ 257 (299)
-+... +.+-..++|+|...=| +--|.....++||++.
T Consensus 403 -----TLy~~-~~Rqyy~~C~I~GtVD---FIFG~a~avfq~C~i~ 439 (587)
T PLN02484 403 -----TLYVH-SNRQFFRECDIYGTVD---FIFGNAAVVLQNCSIY 439 (587)
T ss_pred -----ccccC-CCcEEEEecEEEeccc---eecccceeEEeccEEE
Confidence 22222 2345667777764322 3334456667777663
No 51
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.69 E-value=0.017 Score=56.02 Aligned_cols=149 Identities=17% Similarity=0.148 Sum_probs=78.3
Q ss_pred CCcccHHHHHHHHHHHhhcCC--ccEEEecCCeeEEeeeeeeeCCCccceEEEEee---EE-EEeeccCCCCCCCceeEE
Q 043061 60 DGTDDSKAFMEAWEEACSSEN--EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYG---TI-KASVRLSDYSRDPRHWLV 133 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~~g--g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g---~l-~~~~~~~~~~~~~~~~i~ 133 (299)
||+-+-.-||+||+ +++... .-+|+|.+| +|.= .+.+.- .+.+++|.++| ++ .......
T Consensus 204 dGsG~f~TIq~AI~-a~P~~~~~r~vI~Ik~G-vY~E-~V~I~~-~k~nItliGdg~~~TiIt~n~~~~----------- 268 (509)
T PLN02488 204 DGSGKYNTVNAAIA-AAPEHSRKRFVIYIKTG-VYDE-IVRIGS-TKPNLTLIGDGQDSTIITGNLSAS----------- 268 (509)
T ss_pred CCCCCccCHHHHHH-hchhcCCCcEEEEEeCC-eeEE-EEEecC-CCccEEEEecCCCceEEEEccccc-----------
Confidence 56556777999996 454432 247999999 9963 344410 16788888875 21 1111000
Q ss_pred EeeeecEEEEeceEEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCc----eEEE-eceeeEEEEeEEEEC
Q 043061 134 FENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKM----HLTF-QYCVNVRALNLLVIA 208 (299)
Q Consensus 134 ~~~~~ni~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~----~i~~-~~s~nv~i~~~~I~~ 208 (299)
.|.++. ..+-.....+++..+|++|+|.... .+-+ ..++...+.+|+|..
T Consensus 269 ---------~g~~T~----------------~SATv~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~G 323 (509)
T PLN02488 269 ---------NGKRTF----------------YTATVASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEG 323 (509)
T ss_pred ---------CCCCce----------------eeEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeec
Confidence 010000 0133444556777777777776432 2222 346677777777776
Q ss_pred CCCCCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEc
Q 043061 209 PGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICG 257 (299)
Q Consensus 209 ~~~~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~ 257 (299)
.. |-+... +.+-..++|+|...=|-| -|.....++||++.
T Consensus 324 yQ-----DTLy~~-~~RqyyrdC~I~GtVDFI---FG~a~avFq~C~I~ 363 (509)
T PLN02488 324 YQ-----DALYPH-RDRQFYRECFITGTVDFI---CGNAAAVFQFCQIV 363 (509)
T ss_pred cC-----cceeeC-CCCEEEEeeEEeeccceE---ecceEEEEEccEEE
Confidence 32 323222 234566666665432322 23455666666653
No 52
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=97.68 E-value=0.0055 Score=60.67 Aligned_cols=151 Identities=18% Similarity=0.186 Sum_probs=78.4
Q ss_pred CCcccHHHHHHHHHHHhhcCC--ccEEEecCCeeEEeeeeeeeCCCccceEEEEeeEEEEeeccCCCCCCCceeEEEeee
Q 043061 60 DGTDDSKAFMEAWEEACSSEN--EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENV 137 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~~g--g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~l~~~~~~~~~~~~~~~~i~~~~~ 137 (299)
||.-+-.-||+||+ +++... .-+|+|.+| +|. ..+.+.- .+.+++|.++|.
T Consensus 265 dGsg~f~tI~~Av~-a~p~~~~~~~vI~ik~G-vY~-E~V~i~~-~k~~i~~~G~g~----------------------- 317 (565)
T PLN02468 265 DGSGKYKTISEALK-DVPEKSEKRTIIYVKKG-VYF-ENVRVEK-KKWNVVMVGDGM----------------------- 317 (565)
T ss_pred CCCCCccCHHHHHH-hchhcCCCcEEEEEeCC-ceE-EEEEecC-CCCeEEEEecCC-----------------------
Confidence 55445677999996 454332 248999999 996 3444411 156788887751
Q ss_pred ecEEEEece-EEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCc----eEEE-eceeeEEEEeEEEECCCC
Q 043061 138 NNFRVEGGG-TIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKM----HLTF-QYCVNVRALNLLVIAPGN 211 (299)
Q Consensus 138 ~ni~I~G~G-~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~----~i~~-~~s~nv~i~~~~I~~~~~ 211 (299)
+.-.|+|.. ..||.. . | ..+-.....+++..+|++|+|.... .+-+ ...+...+.+|+|....|
T Consensus 318 ~~tiIt~~~~~~dg~~-t-~--------~saT~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QD 387 (565)
T PLN02468 318 SKTIVSGSLNFVDGTP-T-F--------STATFAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQD 387 (565)
T ss_pred CCCEEEeCCccCCCCC-c-c--------ceeeeeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccc
Confidence 011111100 001110 0 0 0123444557788888888777532 2222 456777788888776332
Q ss_pred CCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEE
Q 043061 212 SPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIIC 256 (299)
Q Consensus 212 ~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~ 256 (299)
-+.... .+-..++|+|...=| +--|....+++||.+
T Consensus 388 -----TLy~~~-~rq~y~~C~I~GtvD---FIFG~a~avfq~c~i 423 (565)
T PLN02468 388 -----TLYAHA-QRQFYRECNIYGTVD---FIFGNSAVVFQNCNI 423 (565)
T ss_pred -----hhccCC-CceEEEeeEEecccc---eeeccceEEEeccEE
Confidence 222222 244566666654322 223345566666665
No 53
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=97.66 E-value=0.011 Score=58.77 Aligned_cols=181 Identities=18% Similarity=0.200 Sum_probs=99.7
Q ss_pred CCcccHHHHHHHHHHHhhcCC--ccEEEecCCeeEEeeeeeeeCCCccceEEEEeeEEEEeeccCCCCCCCceeEEEeee
Q 043061 60 DGTDDSKAFMEAWEEACSSEN--EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENV 137 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~~g--g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~l~~~~~~~~~~~~~~~~i~~~~~ 137 (299)
||.-|-.-||+||+ +++... .-+|+|.+| +|.= .+.+.- .+.+++|.++|.
T Consensus 292 dGsG~f~TIq~Ai~-a~P~~~~~r~vI~Ik~G-vY~E-~V~I~~-~k~~i~l~G~g~----------------------- 344 (596)
T PLN02745 292 DGSGNFTTISDALA-AMPAKYEGRYVIYVKQG-IYDE-TVTVDK-KMVNVTMYGDGS----------------------- 344 (596)
T ss_pred CCCCCcccHHHHHH-hccccCCceEEEEEeCC-eeEE-EEEEcC-CCceEEEEecCC-----------------------
Confidence 55445778999996 554432 247999999 9973 344410 156888887752
Q ss_pred ecEEEEeceE-EeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCc----eEEE-eceeeEEEEeEEEECCCC
Q 043061 138 NNFRVEGGGT-IDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKM----HLTF-QYCVNVRALNLLVIAPGN 211 (299)
Q Consensus 138 ~ni~I~G~G~-idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~----~i~~-~~s~nv~i~~~~I~~~~~ 211 (299)
+...|+|... -+|- ..+ ..+-.....+++..+|++|+|+... .+-+ ..++...+.+|+|....
T Consensus 345 ~~TiIt~~~~~~~g~-----~T~-----~saT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~Q- 413 (596)
T PLN02745 345 QKTIVTGNKNFADGV-----RTF-----RTATFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQ- 413 (596)
T ss_pred CceEEEECCcccCCC-----cce-----eeEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecc-
Confidence 1111111000 0010 000 1134445678888889999887432 2333 45788888999888743
Q ss_pred CCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcC-----C-ce-EEEeecCCCCCcccEEEEEEEee
Q 043061 212 SPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGP-----G-HG-ISIGSLGAGNSEAFVSNVLVNRA 284 (299)
Q Consensus 212 ~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~-----~-~G-i~igs~~~~~~~~~v~nv~i~n~ 284 (299)
|-+... ..+-..++|+|...=| +--|.....++||++.. + .| |.- -++ .+...-..+.|.+|
T Consensus 414 ----DTLy~~-~~Rqyy~~C~I~GtVD---FIFG~a~avf~~C~i~~~~~~~~~~~~iTA--q~r-~~~~~~~Gfvf~~c 482 (596)
T PLN02745 414 ----DTLYAQ-THRQFYRSCVITGTID---FIFGDAAAIFQNCLIFVRKPLPNQQNTVTA--QGR-VDKFETTGIVLQNC 482 (596)
T ss_pred ----cccccC-CCcEEEEeeEEEeecc---EEecceeEEEEecEEEEecCCCCCCceEEe--cCC-CCCCCCceEEEEee
Confidence 323222 2356778888875433 33344677777877642 1 12 221 111 11233457778888
Q ss_pred EEeCC
Q 043061 285 RLSGT 289 (299)
Q Consensus 285 ~~~~~ 289 (299)
++.+.
T Consensus 483 ~i~~~ 487 (596)
T PLN02745 483 RIAPD 487 (596)
T ss_pred EEecC
Confidence 87764
No 54
>PLN02197 pectinesterase
Probab=97.66 E-value=0.009 Score=59.26 Aligned_cols=184 Identities=15% Similarity=0.173 Sum_probs=101.5
Q ss_pred CCcccHHHHHHHHHHHhhcCC--ccEEEecCCeeEEeeeeeeeCCCccceEEEEeeEEEEeeccCCCCCCCceeEEEeee
Q 043061 60 DGTDDSKAFMEAWEEACSSEN--EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENV 137 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~~g--g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~l~~~~~~~~~~~~~~~~i~~~~~ 137 (299)
||+-|-.-||+||+ +++... .-+|+|.+| +|.= .+.+.- .+.+++|.++|.
T Consensus 282 dGsG~f~TIq~Ai~-a~P~~~~~r~vI~Ik~G-vY~E-~V~I~~-~k~ni~l~G~g~----------------------- 334 (588)
T PLN02197 282 DGSGQFKTISQAVM-ACPDKNPGRCIIHIKAG-IYNE-QVTIPK-KKNNIFMFGDGA----------------------- 334 (588)
T ss_pred CCCCCcCCHHHHHH-hccccCCceEEEEEeCc-eEEE-EEEccC-CCceEEEEEcCC-----------------------
Confidence 55555777999996 454432 136899999 9963 343410 156888887752
Q ss_pred ecEEEEece---EEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCc----eEEE-eceeeEEEEeEEEECC
Q 043061 138 NNFRVEGGG---TIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKM----HLTF-QYCVNVRALNLLVIAP 209 (299)
Q Consensus 138 ~ni~I~G~G---~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~----~i~~-~~s~nv~i~~~~I~~~ 209 (299)
+...|++.- ..+|.+ ....+-.....+++..+|++|+|+... .+-+ ...+...+.+|+|...
T Consensus 335 ~~TiIt~~~~~~~~~g~~----------T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~Gy 404 (588)
T PLN02197 335 RKTVISYNRSVKLSPGTT----------TSLSGTVQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGY 404 (588)
T ss_pred CCeEEEeccccccCCCCc----------ccceeEEEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEec
Confidence 111111100 001100 001134555678899999999987532 2333 4578889999999873
Q ss_pred CCCCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcC---Cce--EEEeecCCCCCcccEEEEEEEee
Q 043061 210 GNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGP---GHG--ISIGSLGAGNSEAFVSNVLVNRA 284 (299)
Q Consensus 210 ~~~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~---~~G--i~igs~~~~~~~~~v~nv~i~n~ 284 (299)
-|-+.... .+-..++|+|+..=| +-.|.....++||++.. ..| -.|--.++......-..+.|.||
T Consensus 405 -----QDTLy~~~-~Rqyy~~C~I~GtVD---FIFG~a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C 475 (588)
T PLN02197 405 -----QDTLYVNN-GRQFYRNIVVSGTVD---FIFGKSATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNC 475 (588)
T ss_pred -----CcceEecC-CCEEEEeeEEEeccc---ccccceeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEcc
Confidence 34343332 356778888875433 33344567888887641 122 11211111100233457788888
Q ss_pred EEeCC
Q 043061 285 RLSGT 289 (299)
Q Consensus 285 ~~~~~ 289 (299)
++.+.
T Consensus 476 ~it~~ 480 (588)
T PLN02197 476 RIVPD 480 (588)
T ss_pred EEecC
Confidence 88764
No 55
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.64 E-value=0.0099 Score=58.52 Aligned_cols=151 Identities=15% Similarity=0.177 Sum_probs=82.4
Q ss_pred CCcccHHHHHHHHHHHhhcCC-----ccEEEecCCeeEEeeeeeeeCCCccceEEEEeeEEEEeeccCCCCCCCceeEEE
Q 043061 60 DGTDDSKAFMEAWEEACSSEN-----EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVF 134 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~~g-----g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~l~~~~~~~~~~~~~~~~i~~ 134 (299)
||+-+-.-||+||+ +++... --+|+|.+| +|. ..+.+.- .+.+++|.++|.
T Consensus 230 dGsG~f~TI~~Av~-a~p~~~~~~~~r~vI~vk~G-~Y~-E~V~i~~-~k~~i~l~G~g~-------------------- 285 (538)
T PLN03043 230 YGTDNFTTITDAIA-AAPNNSKPEDGYFVIYAREG-YYE-EYVVVPK-NKKNIMLIGDGI-------------------- 285 (538)
T ss_pred CCCCCCcCHHHHHH-hccccCCCCcceEEEEEcCe-eeE-EEEEeCC-CCCcEEEEecCC--------------------
Confidence 56555778999996 554432 238999999 996 3444410 156888887751
Q ss_pred eeeecEEEEece-EEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCc----eEEE-eceeeEEEEeEEEEC
Q 043061 135 ENVNNFRVEGGG-TIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKM----HLTF-QYCVNVRALNLLVIA 208 (299)
Q Consensus 135 ~~~~ni~I~G~G-~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~----~i~~-~~s~nv~i~~~~I~~ 208 (299)
+..+|+|+- ..|| |..+ ..+.+....+++..+|++|+|.... .+-+ ...+...+.+|+|..
T Consensus 286 ---~~tiIt~~~~~~dg-----~~T~-----~saT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~g 352 (538)
T PLN03043 286 ---NKTIITGNHSVVDG-----WTTF-----NSSTFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEG 352 (538)
T ss_pred ---CCeEEEeCCccCCC-----Cccc-----cceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEec
Confidence 111222210 0111 1111 1145555668888888888887532 2323 456778888888887
Q ss_pred CCCCCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEE
Q 043061 209 PGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIIC 256 (299)
Q Consensus 209 ~~~~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~ 256 (299)
..| -+... +.+-..++|+|...=| +--|.....++||++
T Consensus 353 yQD-----TLy~~-~~rq~y~~c~I~GtVD---FIFG~a~avfq~c~i 391 (538)
T PLN03043 353 YQD-----TLYVH-SLRQFYRECDIYGTVD---FIFGNAAAIFQNCNL 391 (538)
T ss_pred cCc-----ccccC-CCcEEEEeeEEeeccc---eEeecceeeeeccEE
Confidence 433 22222 2245566666654322 222334556666655
No 56
>PLN02916 pectinesterase family protein
Probab=97.63 E-value=0.014 Score=56.69 Aligned_cols=151 Identities=15% Similarity=0.149 Sum_probs=77.6
Q ss_pred CCcccHHHHHHHHHHHhhc-----CCccEEEecCCeeEEeeeeeeeCCCccceEEEEeeEEEEeeccCCCCCCCceeEEE
Q 043061 60 DGTDDSKAFMEAWEEACSS-----ENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVF 134 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~-----~gg~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~l~~~~~~~~~~~~~~~~i~~ 134 (299)
||+-|-.-||+||+ +++. ...-+|+|.+| +|. ..+.+.- .+.+++|.++|.
T Consensus 194 dGsG~f~TIq~AI~-a~P~~~~~~~~r~vI~Ik~G-vY~-E~V~I~~-~k~~i~l~G~g~-------------------- 249 (502)
T PLN02916 194 DGSGTHRTINQALA-ALSRMGKSRTNRVIIYVKAG-VYN-EKVEIDR-HMKNVMFVGDGM-------------------- 249 (502)
T ss_pred CCCCCccCHHHHHH-hcccccCCCCceEEEEEeCc-eee-EEEEecC-CCceEEEEecCC--------------------
Confidence 55455677999996 4542 11247999999 997 3444410 156888887751
Q ss_pred eeeecEEEEece-EEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCc----eEEE-eceeeEEEEeEEEEC
Q 043061 135 ENVNNFRVEGGG-TIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKM----HLTF-QYCVNVRALNLLVIA 208 (299)
Q Consensus 135 ~~~~ni~I~G~G-~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~----~i~~-~~s~nv~i~~~~I~~ 208 (299)
+..+|++.- .-+|.. . ...+-.....+++..+|++|+|.... .+-+ ..++...+.+|+|..
T Consensus 250 ---~~TiIt~~~~~~~g~~-T---------~~SAT~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G 316 (502)
T PLN02916 250 ---DKTIITNNRNVPDGST-T---------YSSATFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKG 316 (502)
T ss_pred ---CCcEEEeCCccCCCCc-c---------eeeEEEEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEec
Confidence 011111100 001100 0 01134445566777777777776432 2222 346777777777776
Q ss_pred CCCCCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEE
Q 043061 209 PGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIIC 256 (299)
Q Consensus 209 ~~~~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~ 256 (299)
.. |-+...+ .+-..++|+|+..=| +--|.....++||++
T Consensus 317 ~Q-----DTLy~~~-~Rqyy~~C~I~GtVD---FIFG~a~avFq~C~I 355 (502)
T PLN02916 317 YQ-----DTLFVHS-LRQFYRDCHIYGTID---FIFGDAAVVFQNCDI 355 (502)
T ss_pred cC-----ceeEeCC-CCEEEEecEEecccc---eeccCceEEEecCEE
Confidence 32 3232222 234556666654322 223344556666655
No 57
>PLN02432 putative pectinesterase
Probab=97.63 E-value=0.014 Score=53.00 Aligned_cols=59 Identities=22% Similarity=0.318 Sum_probs=36.0
Q ss_pred CCeEEEeecCCCCCCCcccHHHHHHHHHHHhhcCC--ccEEEecCCeeEEeeeeeeeCCCccceEEEEee
Q 043061 46 STKIVNVDDFEAKADGTDDSKAFMEAWEEACSSEN--EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYG 113 (299)
Q Consensus 46 ~~~~~~v~d~Ga~gdg~Ddt~Aiq~Ai~~a~~~~g--g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g 113 (299)
.+..+.|.. ||+-|-.-||+||+ +++... ..+|+|.+| +|. ..+.+.- .+.+++|.+++
T Consensus 9 ~~~~~~Va~-----~Gsg~f~TIq~Aid-a~p~~~~~~~~I~I~~G-~Y~-E~V~ip~-~k~~itl~G~~ 69 (293)
T PLN02432 9 TAILIRVDQ-----SGKGDFRKIQDAID-AVPSNNSQLVFIWVKPG-IYR-EKVVVPA-DKPFITLSGTQ 69 (293)
T ss_pred ceEEEEECC-----CCCCCccCHHHHHh-hccccCCceEEEEEeCc-eeE-EEEEEec-cCceEEEEEcC
Confidence 344555533 55445778999996 454433 247899999 994 3344410 16788888764
No 58
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.62 E-value=0.011 Score=59.36 Aligned_cols=152 Identities=14% Similarity=0.150 Sum_probs=80.6
Q ss_pred CCcccHHHHHHHHHHHhhcCC--ccEEEecCCeeEEeeeeeeeCCCccceEEEEeeEEEEeeccCCCCCCCceeEEEeee
Q 043061 60 DGTDDSKAFMEAWEEACSSEN--EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENV 137 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~~g--g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~l~~~~~~~~~~~~~~~~i~~~~~ 137 (299)
||.-|-.-||+||+ +++... .-+|+|.+| +|.= .+.+.- .+.+++|.++|.
T Consensus 257 dGsG~f~TIq~Av~-a~P~~~~~r~vI~Ik~G-vY~E-~V~I~~-~k~~i~l~Gdg~----------------------- 309 (670)
T PLN02217 257 DGSGQYKTINEALN-FVPKKKNTTFVVHIKAG-IYKE-YVQVNR-SMTHLVFIGDGP----------------------- 309 (670)
T ss_pred CCCCCccCHHHHHH-hccccCCceEEEEEeCC-ceEE-EEEEcC-CCCcEEEEecCC-----------------------
Confidence 56556778999996 554432 247999999 9954 333310 145777777651
Q ss_pred ecEEEEece-EEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCc----eEEE-eceeeEEEEeEEEECCCC
Q 043061 138 NNFRVEGGG-TIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKM----HLTF-QYCVNVRALNLLVIAPGN 211 (299)
Q Consensus 138 ~ni~I~G~G-~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~----~i~~-~~s~nv~i~~~~I~~~~~ 211 (299)
+...|+|+- .-||.+ . + ..+-.....+++..+||+|+|.... .+-+ ...+...+.+|+|....
T Consensus 310 ~~TiIt~~~~~~dg~~-T-~--------~SAT~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q- 378 (670)
T PLN02217 310 DKTVISGSKSYKDGIT-T-Y--------KTATVAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQ- 378 (670)
T ss_pred CCeEEEcCCccCCCCC-c-c--------ceEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeecc-
Confidence 111111100 001100 0 0 0134444567888888888877532 2332 45677888888887633
Q ss_pred CCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEc
Q 043061 212 SPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICG 257 (299)
Q Consensus 212 ~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~ 257 (299)
|-+... ..+-..++|+|...=| +--|....+++||++.
T Consensus 379 ----DTLy~~-~~Rqyy~~C~I~GtVD---FIFG~a~avfq~C~I~ 416 (670)
T PLN02217 379 ----DTLYAH-SHRQFYRDCTISGTID---FLFGDAAAVFQNCTLL 416 (670)
T ss_pred ----chhccC-CCcEEEEeCEEEEecc---EEecCceEEEEccEEE
Confidence 222222 2345666666664323 2223445666666663
No 59
>PLN02634 probable pectinesterase
Probab=97.56 E-value=0.0094 Score=55.51 Aligned_cols=50 Identities=16% Similarity=0.317 Sum_probs=32.8
Q ss_pred CCcccHHHHHHHHHHHhhcCC--ccEEEecCCeeEEeeeeeeeCCCccceEEEEee
Q 043061 60 DGTDDSKAFMEAWEEACSSEN--EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYG 113 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~~g--g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g 113 (299)
||+-|-.-||+||+ +++... ..+|+|-+| +|.= .+.+.- .+.+++|+++|
T Consensus 63 dGsGdf~TIQaAId-a~P~~~~~r~vI~Ik~G-vY~E-kV~Ip~-~k~~ItL~G~g 114 (359)
T PLN02634 63 NGHGDFRSVQDAVD-SVPKNNTMSVTIKINAG-FYRE-KVVVPA-TKPYITFQGAG 114 (359)
T ss_pred CCCCCccCHHHHHh-hCcccCCccEEEEEeCc-eEEE-EEEEcC-CCCeEEEEecC
Confidence 55445778999996 454432 247899999 9863 344410 16788998875
No 60
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.55 E-value=0.0098 Score=58.74 Aligned_cols=183 Identities=16% Similarity=0.155 Sum_probs=98.7
Q ss_pred CCcccHHHHHHHHHHHhhc-C--CccEEEecCCeeEEeeeeeeeCCCccceEEEEeeEEEEeeccCCCCCCCceeEEEee
Q 043061 60 DGTDDSKAFMEAWEEACSS-E--NEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFEN 136 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~-~--gg~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~l~~~~~~~~~~~~~~~~i~~~~ 136 (299)
||+-+-.-||+||+ +++. . +--+|+|.+| +|.= .+.+.- .+.+++|.++|.
T Consensus 248 dGsg~f~TIq~Av~-a~p~~~~~~r~vI~vk~G-vY~E-~V~i~~-~k~~v~l~G~g~---------------------- 301 (553)
T PLN02708 248 DGNCCYKTVQEAVN-AAPDNNGDRKFVIRIKEG-VYEE-TVRVPL-EKKNVVFLGDGM---------------------- 301 (553)
T ss_pred CCCCCccCHHHHHH-hhhhccCCccEEEEEeCc-eEEe-eeeecC-CCccEEEEecCC----------------------
Confidence 55555777999996 4544 2 2248999999 9973 344410 156888887752
Q ss_pred eecEEEEeceEEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCc----eEEE-eceeeEEEEeEEEECCCC
Q 043061 137 VNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKM----HLTF-QYCVNVRALNLLVIAPGN 211 (299)
Q Consensus 137 ~~ni~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~----~i~~-~~s~nv~i~~~~I~~~~~ 211 (299)
...+|+|.-.....| |. ....+-.....+++..+|++|+|.... .+-+ ...+.+.+.+|+|....
T Consensus 302 -~~TiIt~~~~~~~~g---~~-----T~~saT~~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~Q- 371 (553)
T PLN02708 302 -GKTVITGSLNVGQPG---IS-----TYNTATVGVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQ- 371 (553)
T ss_pred -CceEEEecCccCCCC---cC-----ccceEEEEEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeecc-
Confidence 111111110000000 00 001134445667888888888887642 2333 45778888888888743
Q ss_pred CCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcC---------Cc-e-EEEeecCCCCCcccEEEEE
Q 043061 212 SPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGP---------GH-G-ISIGSLGAGNSEAFVSNVL 280 (299)
Q Consensus 212 ~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~---------~~-G-i~igs~~~~~~~~~v~nv~ 280 (299)
|-+...+ .+...++|+|...=| +--|....+++||++.. +. + |.. -++ .+...-..+.
T Consensus 372 ----DTLy~~~-~rq~y~~C~I~GtVD---FIFG~a~avfq~c~i~~~~~~~~~~~~~~~~iTA--~~r-~~~~~~~G~v 440 (553)
T PLN02708 372 ----DTLYAHS-LRQFYKSCRIQGNVD---FIFGNSAAVFQDCAILIAPRQLKPEKGENNAVTA--HGR-TDPAQSTGFV 440 (553)
T ss_pred ----ccceeCC-CceEEEeeEEeecCC---EEecCceEEEEccEEEEeccccCCCCCCceEEEe--CCC-CCCCCCceEE
Confidence 3333322 345677787775433 22344567777777641 11 1 222 111 1223345677
Q ss_pred EEeeEEeCC
Q 043061 281 VNRARLSGT 289 (299)
Q Consensus 281 i~n~~~~~~ 289 (299)
|.||++.+.
T Consensus 441 f~~C~it~~ 449 (553)
T PLN02708 441 FQNCLINGT 449 (553)
T ss_pred EEccEEecC
Confidence 888877664
No 61
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=97.54 E-value=0.01 Score=58.38 Aligned_cols=181 Identities=14% Similarity=0.155 Sum_probs=95.7
Q ss_pred CCcccHHHHHHHHHHHhhcCCc--cEEEecCCeeEEeeeeeeeCCCccceEEEEeeEEEEeeccCCCCCCCceeEEEeee
Q 043061 60 DGTDDSKAFMEAWEEACSSENE--AVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENV 137 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~~gg--~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~l~~~~~~~~~~~~~~~~i~~~~~ 137 (299)
||.-|-.-||+||+ +++.... -+|+|.+| +|.= .+.+.- -+.+++|.++|.
T Consensus 243 dGsG~f~TIq~Ai~-a~P~~~~~r~vI~Ik~G-~Y~E-~V~i~~-~k~~i~l~G~g~----------------------- 295 (548)
T PLN02301 243 DGSGKYKTVKEAVA-SAPDNSKTRYVIYVKKG-TYKE-NVEIGK-KKKNLMLVGDGM----------------------- 295 (548)
T ss_pred CCCCCcccHHHHHH-hhhhcCCceEEEEEeCc-eeeE-EEEecC-CCceEEEEecCC-----------------------
Confidence 55455778999996 4544332 37999999 9963 444410 156888887752
Q ss_pred ecEEEEece-EEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCc----eEEE-eceeeEEEEeEEEECCCC
Q 043061 138 NNFRVEGGG-TIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKM----HLTF-QYCVNVRALNLLVIAPGN 211 (299)
Q Consensus 138 ~ni~I~G~G-~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~----~i~~-~~s~nv~i~~~~I~~~~~ 211 (299)
+.-+|+|.. ..||.+ ....+-.....+++..+|++|+|.... .+-+ ..++...+.+|+|....
T Consensus 296 ~~TiIt~~~~~~dg~~----------T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~Q- 364 (548)
T PLN02301 296 DSTIITGSLNVIDGST----------TFRSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQ- 364 (548)
T ss_pred CCcEEEeCCccCCCCC----------ceeeEEEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeecc-
Confidence 011111110 001110 001134455667888888888887532 2322 45678888888888743
Q ss_pred CCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcC-----C-ce-EEEeecCCCCCcccEEEEEEEee
Q 043061 212 SPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGP-----G-HG-ISIGSLGAGNSEAFVSNVLVNRA 284 (299)
Q Consensus 212 ~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~-----~-~G-i~igs~~~~~~~~~v~nv~i~n~ 284 (299)
|-+.... .+...++|+|...=| +--|.....++||++.. + .| |.- .++ .+...-..+.|.||
T Consensus 365 ----DTLy~~~-~Rqyy~~C~I~GtVD---FIFG~a~avfq~c~i~~~~~~~~~~~~iTA--qgr-~~~~~~tG~vf~~c 433 (548)
T PLN02301 365 ----DTLYAHS-LRQFYRDSYITGTVD---FIFGNAAVVFQNCKIVARKPMAGQKNMVTA--QGR-TDPNQNTGISIQKC 433 (548)
T ss_pred ----ccceecC-CcEEEEeeEEEeccc---eecccceeEEeccEEEEecCCCCCCceEEe--cCC-CCCCCCCEEEEEee
Confidence 3232222 345667777765323 23344566777776631 1 12 222 111 11223446677777
Q ss_pred EEeCC
Q 043061 285 RLSGT 289 (299)
Q Consensus 285 ~~~~~ 289 (299)
++...
T Consensus 434 ~i~~~ 438 (548)
T PLN02301 434 DIIAS 438 (548)
T ss_pred EEecC
Confidence 77654
No 62
>PLN02314 pectinesterase
Probab=97.52 E-value=0.013 Score=58.40 Aligned_cols=151 Identities=18% Similarity=0.174 Sum_probs=77.6
Q ss_pred CCcccHHHHHHHHHHHhhcCC--ccEEEecCCeeEEeeeeeeeCCCccceEEEEeeEEEEeeccCCCCCCCceeEEEeee
Q 043061 60 DGTDDSKAFMEAWEEACSSEN--EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENV 137 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~~g--g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~l~~~~~~~~~~~~~~~~i~~~~~ 137 (299)
||+-|-.-||+||+ +++... .-+|+|.+| +|.= .+.+.- .+.|++|.++|.
T Consensus 285 dGsg~f~TI~~Av~-a~p~~~~~r~vI~ik~G-~Y~E-~V~i~~-~k~~i~l~G~g~----------------------- 337 (586)
T PLN02314 285 DGSGDVKTINEAVA-SIPKKSKSRFVIYVKEG-TYVE-NVLLDK-SKWNVMIYGDGK----------------------- 337 (586)
T ss_pred CCCCCccCHHHHHh-hccccCCceEEEEEcCc-eEEE-EEEecC-CCceEEEEecCC-----------------------
Confidence 45345666999996 554432 237999999 9963 343411 156888887751
Q ss_pred ecEEEEece-EEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCc----eEEE-eceeeEEEEeEEEECCCC
Q 043061 138 NNFRVEGGG-TIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKM----HLTF-QYCVNVRALNLLVIAPGN 211 (299)
Q Consensus 138 ~ni~I~G~G-~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~----~i~~-~~s~nv~i~~~~I~~~~~ 211 (299)
+...|+|.. ..||.. .+ ..+-.....+++..+|++|+|.... .+-+ ...+...+.+|++....
T Consensus 338 ~~tiIt~~~~~~~g~~-t~---------~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~Q- 406 (586)
T PLN02314 338 DKTIISGSLNFVDGTP-TF---------STATFAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQ- 406 (586)
T ss_pred CCcEEEecCCcCCCCC-cc---------ceEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEecc-
Confidence 011111100 001110 00 0134445667777778888777432 2222 45667777777777633
Q ss_pred CCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEE
Q 043061 212 SPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIIC 256 (299)
Q Consensus 212 ~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~ 256 (299)
|-+... +..-..++|+|...=| +--|.....++||.+
T Consensus 407 ----DTLy~~-~~rq~y~~C~I~GtvD---FIFG~a~avf~~c~i 443 (586)
T PLN02314 407 ----DTLYAH-SNRQFYRDCDITGTID---FIFGNAAVVFQNCNI 443 (586)
T ss_pred ----chheeC-CCCEEEEeeEEEeccc---eeccCceeeeeccEE
Confidence 222222 2244556666654322 223334556666655
No 63
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.52 E-value=0.0045 Score=56.55 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=29.5
Q ss_pred CCcccHHHHHHHHHHHhhcCC--ccEEEecCCeeEEeeeeeeeCCCccceEEEEee
Q 043061 60 DGTDDSKAFMEAWEEACSSEN--EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYG 113 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~~g--g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g 113 (299)
||.-|-.-||+||++ ++... .-+|+|.+| +|. ..+.+.- .+.+++|.+++
T Consensus 7 dG~gdf~TIq~Aida-~p~~~~~~~~I~I~~G-~Y~-E~V~i~~-~k~~v~l~G~~ 58 (298)
T PF01095_consen 7 DGSGDFTTIQAAIDA-APDNNTSRYTIFIKPG-TYR-EKVTIPR-SKPNVTLIGEG 58 (298)
T ss_dssp TSTSSBSSHHHHHHH-S-SSSSS-EEEEE-SE-EEE---EEE-S-TSTTEEEEES-
T ss_pred CCCCCccCHHHHHHh-chhcCCceEEEEEeCe-eEc-cccEecc-ccceEEEEecC
Confidence 444456679999964 54433 247999999 996 3455521 14688888764
No 64
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=97.49 E-value=0.032 Score=55.37 Aligned_cols=152 Identities=15% Similarity=0.183 Sum_probs=76.9
Q ss_pred CCcccHHHHHHHHHHHhhcCC--ccEEEecCCeeEEeeeeeeeCCCccceEEEEeeEEEEeeccCCCCCCCceeEEEeee
Q 043061 60 DGTDDSKAFMEAWEEACSSEN--EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENV 137 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~~g--g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~l~~~~~~~~~~~~~~~~i~~~~~ 137 (299)
||+-+-.-||+||+ +++... .-+|+|.+| +|.= .+.+.- .+.+++|.++|.
T Consensus 266 dGsG~f~TIq~Av~-a~p~~~~~r~vI~Ik~G-vY~E-~V~i~~-~k~~i~l~G~g~----------------------- 318 (572)
T PLN02990 266 DGSGQYKTINEALN-AVPKANQKPFVIYIKQG-VYNE-KVDVTK-KMTHVTFIGDGP----------------------- 318 (572)
T ss_pred CCCCCCcCHHHHHh-hCcccCCceEEEEEeCc-eeEE-EEEecC-CCCcEEEEecCC-----------------------
Confidence 55445667999996 454432 247999999 9963 344410 157888888751
Q ss_pred ecEEEEece-EEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCc----eEEE-eceeeEEEEeEEEECCCC
Q 043061 138 NNFRVEGGG-TIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKM----HLTF-QYCVNVRALNLLVIAPGN 211 (299)
Q Consensus 138 ~ni~I~G~G-~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~----~i~~-~~s~nv~i~~~~I~~~~~ 211 (299)
....|+|.- .-+|. |..+ ..+-.....+++..+|++|+|.... .+-+ ...+...+.+|+|....|
T Consensus 319 ~~TiIt~~~~~~~g~----~~T~-----~saT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QD 389 (572)
T PLN02990 319 TKTKITGSLNFYIGK----VKTY-----LTATVAINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQD 389 (572)
T ss_pred CceEEEeccccCCCC----ccce-----eeeEEEEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccc
Confidence 011111100 00000 0000 0133444567777777777777532 2222 346677777777776332
Q ss_pred CCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEE
Q 043061 212 SPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIIC 256 (299)
Q Consensus 212 ~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~ 256 (299)
-+... +.+-..++|+|...=|-| .|.....++||++
T Consensus 390 -----TLy~~-~~Rqyy~~C~I~GtVDFI---FG~a~avf~~C~i 425 (572)
T PLN02990 390 -----TLYVH-SHRQFFRDCTVSGTVDFI---FGDAKVVLQNCNI 425 (572)
T ss_pred -----hhccC-CCcEEEEeeEEecccceE---ccCceEEEEccEE
Confidence 22221 124455666665432222 2334555566655
No 65
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=97.47 E-value=0.013 Score=58.30 Aligned_cols=183 Identities=16% Similarity=0.202 Sum_probs=94.9
Q ss_pred CCcccHHHHHHHHHHHhhcCC--ccEEEecCCeeEEeeeeeeeCCCccceEEEEeeEEEEeeccCCCCCCCceeEEEeee
Q 043061 60 DGTDDSKAFMEAWEEACSSEN--EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENV 137 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~~g--g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~l~~~~~~~~~~~~~~~~i~~~~~ 137 (299)
||+-|-.-||+||+ +++... .-+|+|.+| +|.= .+.+.- .+.+++|.++|.
T Consensus 282 dGsG~f~TI~~Av~-a~p~~~~~r~vI~ik~G-vY~E-~V~i~~-~k~ni~l~Gdg~----------------------- 334 (587)
T PLN02313 282 DGSGDFTTVAAAVA-AAPEKSNKRFVIHIKAG-VYRE-NVEVTK-KKKNIMFLGDGR----------------------- 334 (587)
T ss_pred CCCCCCccHHHHHH-hccccCCceEEEEEeCc-eeEE-EEEeCC-CCCeEEEEecCC-----------------------
Confidence 56556778999996 454432 248999999 9963 333310 156788887752
Q ss_pred ecEEEEece-EEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCc----eEEE-eceeeEEEEeEEEECCCC
Q 043061 138 NNFRVEGGG-TIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKM----HLTF-QYCVNVRALNLLVIAPGN 211 (299)
Q Consensus 138 ~ni~I~G~G-~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~----~i~~-~~s~nv~i~~~~I~~~~~ 211 (299)
+...|+|.- ..||.. . + ..+-.....+++..+|++|+|.... .+-+ ...+...+.+|+|....
T Consensus 335 ~~TiIt~~~~~~~g~~-t-~--------~sat~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~Q- 403 (587)
T PLN02313 335 GKTIITGSRNVVDGST-T-F--------HSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQ- 403 (587)
T ss_pred CccEEEeCCcccCCCC-c-e--------eeEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEeccc-
Confidence 111122110 011110 0 0 0134445567888888888887532 2222 45677888888888643
Q ss_pred CCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcC---Cce--EEEeecCCCCCcccEEEEEEEeeEE
Q 043061 212 SPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGP---GHG--ISIGSLGAGNSEAFVSNVLVNRARL 286 (299)
Q Consensus 212 ~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~---~~G--i~igs~~~~~~~~~v~nv~i~n~~~ 286 (299)
|-+.... .+-..++|+|...=|-| -|....+++||++.. ..| -.|---++. ++..-..+.|.||++
T Consensus 404 ----DTLy~~~-~rq~y~~c~I~GtvDFI---FG~a~avfq~c~i~~r~~~~~~~~~iTAqgr~-~~~~~tG~v~~~c~i 474 (587)
T PLN02313 404 ----DTLYVHS-NRQFFVKCHITGTVDFI---FGNAAAVLQDCDINARRPNSGQKNMVTAQGRS-DPNQNTGIVIQNCRI 474 (587)
T ss_pred ----chhccCC-CcEEEEeeEEeecccee---ccceeEEEEccEEEEecCCCCCcceEEecCCC-CCCCCceEEEEecEE
Confidence 2222222 34566777776543322 244566777776641 111 111111111 122345667777777
Q ss_pred eCC
Q 043061 287 SGT 289 (299)
Q Consensus 287 ~~~ 289 (299)
...
T Consensus 475 ~~~ 477 (587)
T PLN02313 475 GGT 477 (587)
T ss_pred ecC
Confidence 653
No 66
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=97.46 E-value=0.0069 Score=59.59 Aligned_cols=153 Identities=16% Similarity=0.181 Sum_probs=79.9
Q ss_pred CCcccHHHHHHHHHHHhhc----CCccEEEecCCeeEEeeeeeeeCCCccceEEEEeeEEEEeeccCCCCCCCceeEEEe
Q 043061 60 DGTDDSKAFMEAWEEACSS----ENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFE 135 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~----~gg~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~l~~~~~~~~~~~~~~~~i~~~ 135 (299)
||+-|-.-||+||+ +++. ...-+|+|.+| +|.=. +.+.- .+.+++|.++|.
T Consensus 230 dGsG~f~TIq~Ai~-a~p~~~~~~~r~vI~Ik~G-~Y~E~-V~i~~-~k~~i~l~G~g~--------------------- 284 (539)
T PLN02995 230 DGSGHFNTVQAAID-VAGRRKVTSGRFVIYVKRG-IYQEN-INVRL-NNDDIMLVGDGM--------------------- 284 (539)
T ss_pred CCCCCccCHHHHHH-hcccccCCCceEEEEEeCC-EeEEE-EEecC-CCCcEEEEEcCC---------------------
Confidence 56556778999996 4542 22357999999 99643 33310 167888888752
Q ss_pred eeecEEEEeceEEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCc----eEEE-eceeeEEEEeEEEECCC
Q 043061 136 NVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKM----HLTF-QYCVNVRALNLLVIAPG 210 (299)
Q Consensus 136 ~~~ni~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~----~i~~-~~s~nv~i~~~~I~~~~ 210 (299)
....|+|.-.. +.+ |.. ...+-.....+++..+|++|+|.... .+-+ ...+...+.+|+|....
T Consensus 285 --~~TvIt~~~~~-~~~---~~T-----~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~Q 353 (539)
T PLN02995 285 --RSTIITGGRSV-KGG---YTT-----YNSATAGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQ 353 (539)
T ss_pred --CCeEEEeCCcc-CCC---Ccc-----cceEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEeccc
Confidence 11111110000 000 000 00133444567788888888877532 2222 45677788888887643
Q ss_pred CCCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEc
Q 043061 211 NSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICG 257 (299)
Q Consensus 211 ~~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~ 257 (299)
| -+.... .+-..++|+|...=| +--|.....++||++.
T Consensus 354 D-----TLy~~~-~Rqyy~~C~I~GtVD---FIFG~a~avf~~C~i~ 391 (539)
T PLN02995 354 D-----TLMVHS-QRQFYRECYIYGTVD---FIFGNAAAVFQNCIIL 391 (539)
T ss_pred c-----hhccCC-CceEEEeeEEeeccc---eEecccceEEeccEEE
Confidence 3 222211 244666666654322 2223345666666653
No 67
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.43 E-value=0.013 Score=57.32 Aligned_cols=152 Identities=16% Similarity=0.180 Sum_probs=81.5
Q ss_pred CCcccHHHHHHHHHHHhhcCC--ccEEEecCCeeEEeeeeeeeCCCccceEEEEeeEEEEeeccCCCCCCCceeEEEeee
Q 043061 60 DGTDDSKAFMEAWEEACSSEN--EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENV 137 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~~g--g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~l~~~~~~~~~~~~~~~~i~~~~~ 137 (299)
||+-|-.-||+||+ +++... .-+|+|.+| +|. ..+.+.- .+.+++|.++|.
T Consensus 213 dGsG~f~TIq~Ai~-a~P~~~~~r~vI~Ik~G-vY~-E~V~I~~-~k~~i~l~G~g~----------------------- 265 (520)
T PLN02201 213 DGTGNFTTIMDAVL-AAPDYSTKRYVIYIKKG-VYL-ENVEIKK-KKWNIMMVGDGI----------------------- 265 (520)
T ss_pred CCCCCccCHHHHHH-hchhcCCCcEEEEEeCc-eeE-EEEEecC-CCceEEEEecCC-----------------------
Confidence 56556778999996 454322 248999999 996 3444410 156788887752
Q ss_pred ecEEEEece-EEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCc----eEEE-eceeeEEEEeEEEECCCC
Q 043061 138 NNFRVEGGG-TIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKM----HLTF-QYCVNVRALNLLVIAPGN 211 (299)
Q Consensus 138 ~ni~I~G~G-~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~----~i~~-~~s~nv~i~~~~I~~~~~ 211 (299)
+..+|+++. ..+| |..+ ..+-.....+++..+|++|+|+... .+-+ ...+...+.+|+|...
T Consensus 266 ~~TiIt~~~~~~~g-----~~T~-----~SAT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~-- 333 (520)
T PLN02201 266 DATVITGNRSFIDG-----WTTF-----RSATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGY-- 333 (520)
T ss_pred CCcEEEeCCccCCC-----Cccc-----ceEEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeecc--
Confidence 111111110 0011 0000 1134445567788888888877532 2222 4467778888888763
Q ss_pred CCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEc
Q 043061 212 SPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICG 257 (299)
Q Consensus 212 ~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~ 257 (299)
-|-+.... .+-..++|+|+..=| +--|.....++||++.
T Consensus 334 ---QDTLy~~~-~Rqyy~~C~I~GtVD---FIFG~a~avf~~C~i~ 372 (520)
T PLN02201 334 ---QDTLYTHT-MRQFYRECRITGTVD---FIFGDATAVFQNCQIL 372 (520)
T ss_pred ---CCeeEeCC-CCEEEEeeEEeeccc---EEecCceEEEEccEEE
Confidence 33333322 245556677664322 2233455666666653
No 68
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.40 E-value=0.0086 Score=51.56 Aligned_cols=105 Identities=24% Similarity=0.360 Sum_probs=73.1
Q ss_pred EEEEeEEEEcCCC------ceEEEeceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeE
Q 043061 176 VRVSSLRFRNSQK------MHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNV 249 (299)
Q Consensus 176 v~I~~v~i~ns~~------~~i~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni 249 (299)
+.|++++|..... .++.+..|+++.|+||++.. .+.+|+.+..+....+.++... .++.+..++.++
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~----~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 166 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIEN----SGGDGIYFNTGTDYRIIGSTHV---SGIFIDNGSNNV 166 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEE---EEEEEESCEEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEc----cCccEEEEEccccCcEeecccc---eeeeeccceeEE
Confidence 4488888875542 35888889999999999997 4678888875555555444332 134444456778
Q ss_pred EEEeeEEcCC-ceEEEeecCCCCCcccEEEEEEEeeEEeC-CceeEEEEe
Q 043061 250 RATDIICGPG-HGISIGSLGAGNSEAFVSNVLVNRARLSG-TTNGVRIKT 297 (299)
Q Consensus 250 ~I~n~~~~~~-~Gi~igs~~~~~~~~~v~nv~i~n~~~~~-~~~gi~ik~ 297 (299)
.+.|+.+..+ .|+..++ ++++++||.+.+ ...||.+..
T Consensus 167 ~~~~~~~~~~~~g~~~~~----------~~~~i~n~~~~~~~~~gi~i~~ 206 (225)
T PF12708_consen 167 IVNNCIFNGGDNGIILGN----------NNITISNNTFEGNCGNGINIEG 206 (225)
T ss_dssp EEECEEEESSSCSEECEE----------EEEEEECEEEESSSSESEEEEE
T ss_pred EECCccccCCCceeEeec----------ceEEEEeEEECCccceeEEEEC
Confidence 8888888765 4754432 699999999998 889998764
No 69
>PLN02497 probable pectinesterase
Probab=97.39 E-value=0.028 Score=51.95 Aligned_cols=50 Identities=16% Similarity=0.198 Sum_probs=32.8
Q ss_pred CCcccHHHHHHHHHHHhhcCCc--cEEEecCCeeEEeeeeeeeCCCccceEEEEee
Q 043061 60 DGTDDSKAFMEAWEEACSSENE--AVLVVPNNKIYHLKPITFSGPCKSDLTMKIYG 113 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~~gg--~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g 113 (299)
||+-|-.-||+||+ +++.... .+|+|-+| +|.= .+.+.- .+.+++|+++|
T Consensus 39 dGsGdf~TIq~AId-avP~~~~~~~~I~Ik~G-~Y~E-kV~Ip~-~k~~itl~G~g 90 (331)
T PLN02497 39 SGHGNFTTIQSAID-SVPSNNKHWFCINVKAG-LYRE-KVKIPY-DKPFIVLVGAG 90 (331)
T ss_pred CCCCCccCHHHHHh-hccccCCceEEEEEeCc-EEEE-EEEecC-CCCcEEEEecC
Confidence 56555778999996 5544332 36899999 9953 333310 16788888774
No 70
>PLN02176 putative pectinesterase
Probab=97.38 E-value=0.02 Score=53.09 Aligned_cols=50 Identities=20% Similarity=0.237 Sum_probs=33.3
Q ss_pred CCcccHHHHHHHHHHHhhcCC--ccEEEecCCeeEEeeeeeeeCCCccceEEEEee
Q 043061 60 DGTDDSKAFMEAWEEACSSEN--EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYG 113 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~~g--g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g 113 (299)
||.-|-.-||+||+ +++... .-+|+|++| +|. ..+.+.- .+.+++|+++|
T Consensus 46 dGsGdf~TIq~AId-avP~~~~~~~~I~Ik~G-vY~-EkV~Ip~-~k~~vtl~G~g 97 (340)
T PLN02176 46 NDARYFKTVQSAID-SIPLQNQNWIRILIQNG-IYR-EKVTIPK-EKGYIYMQGKG 97 (340)
T ss_pred CCCCCccCHHHHHh-hchhcCCceEEEEECCc-EEE-EEEEECC-CCccEEEEEcC
Confidence 56445778999996 454433 136899999 996 3444410 16789999875
No 71
>PLN02304 probable pectinesterase
Probab=97.36 E-value=0.01 Score=55.61 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=33.3
Q ss_pred CCcccHHHHHHHHHHHhhcCC--ccEEEecCCeeEEeeeeeeeCCCccceEEEEee
Q 043061 60 DGTDDSKAFMEAWEEACSSEN--EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYG 113 (299)
Q Consensus 60 dg~Ddt~Aiq~Ai~~a~~~~g--g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g 113 (299)
||+-|-.-||+||+ +++... ..+|+|.+| +|. ..+.+.- .+.+++|+++|
T Consensus 82 dGsGdf~TIQ~AId-avP~~~~~r~vI~Ik~G-vY~-EkV~Ip~-~K~~Itl~G~g 133 (379)
T PLN02304 82 NGCCNFTTVQSAVD-AVGNFSQKRNVIWINSG-IYY-EKVTVPK-TKPNITFQGQG 133 (379)
T ss_pred CCCCCccCHHHHHh-hCcccCCCcEEEEEeCe-EeE-EEEEECC-CCCcEEEEecC
Confidence 56455778999996 454422 247899999 996 3444410 16789998875
No 72
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.27 E-value=0.046 Score=51.18 Aligned_cols=170 Identities=16% Similarity=0.170 Sum_probs=89.9
Q ss_pred EeecCCCCCCCcccHHHHHHHHHHHhhcCCccEEEecCCeeEEe-eeeeeeCCCccceEEEEee-EEEEeec-cCCCC--
Q 043061 51 NVDDFEAKADGTDDSKAFMEAWEEACSSENEAVLVVPNNKIYHL-KPITFSGPCKSDLTMKIYG-TIKASVR-LSDYS-- 125 (299)
Q Consensus 51 ~v~d~Ga~gdg~Ddt~Aiq~Ai~~a~~~~gg~~v~iP~G~~Y~~-~~l~l~~p~~snvtl~~~g-~l~~~~~-~~~~~-- 125 (299)
.|+.|-..++. | +.+||+.- ..|.+-+|++|.+ +++.+ ++...|.+.| +++.... +..+.
T Consensus 45 qvkt~~~~P~e--D---le~~I~~h------aKVaL~Pg~~Y~i~~~V~I----~~~cYIiGnGA~V~v~~~~~~~f~v~ 109 (386)
T PF01696_consen 45 QVKTYWMEPGE--D---LEEAIRQH------AKVALRPGAVYVIRKPVNI----RSCCYIIGNGATVRVNGPDRVAFRVC 109 (386)
T ss_pred eEEEEEcCCCc--C---HHHHHHhc------CEEEeCCCCEEEEeeeEEe----cceEEEECCCEEEEEeCCCCceEEEE
Confidence 45566666663 3 55666421 2566666679987 68988 5677777765 4443221 11110
Q ss_pred -CCCceeEEEeeeecEEEEeceEEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCceEEEeceeeEEEEeE
Q 043061 126 -RDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNL 204 (299)
Q Consensus 126 -~~~~~~i~~~~~~ni~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~s~nv~i~~~ 204 (299)
....+ ...+..+|++.. =.+++.+. ..++.|....++++.|+.|.+..+..+... ....++||
T Consensus 110 ~~~~~P--~V~gM~~VtF~n-i~F~~~~~-----------~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~--~~~~VrGC 173 (386)
T PF01696_consen 110 MQSMGP--GVVGMEGVTFVN-IRFEGRDT-----------FSGVVFHANTNTLFHGCSFFGFHGTCLESW--AGGEVRGC 173 (386)
T ss_pred cCCCCC--eEeeeeeeEEEE-EEEecCCc-----------cceeEEEecceEEEEeeEEecCcceeEEEc--CCcEEeee
Confidence 00001 123344455444 23333220 115777777788888888877776665554 45677777
Q ss_pred EEECCCCCCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcCC
Q 043061 205 LVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPG 259 (299)
Q Consensus 205 ~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~~ 259 (299)
++.+ .--|+.-.+-..+.|.+|.|+--- +.|.+ ..+..|++|.+...
T Consensus 174 ~F~~-----C~~gi~~~~~~~lsVk~C~FekC~--igi~s-~G~~~i~hn~~~ec 220 (386)
T PF01696_consen 174 TFYG-----CWKGIVSRGKSKLSVKKCVFEKCV--IGIVS-EGPARIRHNCASEC 220 (386)
T ss_pred EEEE-----EEEEeecCCcceEEeeheeeeheE--EEEEe-cCCeEEecceeccc
Confidence 7765 223444444456666777765321 23322 23455555555544
No 73
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=97.00 E-value=0.00076 Score=45.72 Aligned_cols=37 Identities=32% Similarity=0.409 Sum_probs=21.9
Q ss_pred CCCCC-cccHHHHHHHHHHHhhcCCccEEEecCCeeEEeeee
Q 043061 57 AKADG-TDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPI 97 (299)
Q Consensus 57 a~gdg-~Ddt~Aiq~Ai~~a~~~~gg~~v~iP~G~~Y~~~~l 97 (299)
|+||| +|||+||.+|++ +. ..| .++=-.|.||.+.+|
T Consensus 1 A~GDGvtdDt~A~~a~l~-a~-~~g--~~IDg~GlTykVs~l 38 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALE-AS-PVG--RKIDGAGLTYKVSSL 38 (67)
T ss_dssp ---CCCCE-HHHHHHHHH-HS--TT--S-EE-TT-EEEESS-
T ss_pred CCCccccCcHHHHHHHHh-cc-CCC--eEEecCCceEEEeeC
Confidence 68999 999999999994 32 333 444566789998776
No 74
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=96.79 E-value=0.025 Score=50.93 Aligned_cols=122 Identities=17% Similarity=0.110 Sum_probs=97.0
Q ss_pred EEEEccCcEEEEeEEEE-cCCCceEEEeceeeEEEEeEEEECCCC-CCCCCeeee-eceecEEEEeeEEEc---------
Q 043061 168 VTFYGCKNVRVSSLRFR-NSQKMHLTFQYCVNVRALNLLVIAPGN-SPNTDGIHV-TGTQNILIKNCVIRT--------- 235 (299)
Q Consensus 168 i~~~~~~nv~I~~v~i~-ns~~~~i~~~~s~nv~i~~~~I~~~~~-~~~~DGi~~-~~s~~v~I~n~~i~~--------- 235 (299)
+.+.-|.|.+|.++--. ..-.+++.+.+..||.|+|++|..... -++-|+|.+ ..++|++|++|+|..
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h 174 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSH 174 (345)
T ss_pred EEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccC
Confidence 88899999999998521 223578899889999999999986442 234599999 688999999999976
Q ss_pred CCccEEecCCcEeEEEEeeEEcCCc-eEEEeecCCCCCcccEEEEEEEeeEEeCC
Q 043061 236 GDDCISIVSGSKNVRATDIICGPGH-GISIGSLGAGNSEAFVSNVLVNRARLSGT 289 (299)
Q Consensus 236 gDD~iai~sgs~ni~I~n~~~~~~~-Gi~igs~~~~~~~~~v~nv~i~n~~~~~~ 289 (299)
+|..+-|+.++..|+|.+|.|.... ++-+|+......+..-.+|++.+|.|.++
T Consensus 175 ~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 175 GDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred CCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccc
Confidence 4666889999999999999998754 77777765433334567899999999995
No 75
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=96.57 E-value=0.07 Score=48.58 Aligned_cols=64 Identities=14% Similarity=0.111 Sum_probs=35.0
Q ss_pred CCCeEEEeecCCCC----CCCcccHHHHHHHHHHHhhcCC--ccEEEecCCeeEEeeeeeeeCCCccceEEEEe
Q 043061 45 SSTKIVNVDDFEAK----ADGTDDSKAFMEAWEEACSSEN--EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIY 112 (299)
Q Consensus 45 ~~~~~~~v~d~Ga~----gdg~Ddt~Aiq~Ai~~a~~~~g--g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~ 112 (299)
+.+.++.+..|-++ .|| ++-.-||+|+++|....+ -..+.+.+| .|. +.+.+.-+ ...+||.++
T Consensus 71 ps~~~~~a~~~~avvsa~a~G-~~f~TIQaAvdaA~~~~~~kr~yI~vk~G-vY~-e~v~Vp~~-~~~ITLyGe 140 (405)
T COG4677 71 PSPITLPAQPDFAVVSAGAQG-VTFTTIQAAVDAAIIKRTNKRQYIAVKAG-VYQ-ETVYVPAA-PGGITLYGE 140 (405)
T ss_pred CCCceeccccceeEEecCCCc-cchHHHHHHHhhhcccCCCceEEEEEccc-eec-eeEEecCC-CCceeEEec
Confidence 44556666555333 233 455569999976655444 246778889 883 23333110 223677665
No 76
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=96.20 E-value=0.073 Score=48.72 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=19.4
Q ss_pred EeEEEEeeEEcCCc-eEEEeecCCCCCcccEEEEEEEeeEEeCCc
Q 043061 247 KNVRATDIICGPGH-GISIGSLGAGNSEAFVSNVLVNRARLSGTT 290 (299)
Q Consensus 247 ~ni~I~n~~~~~~~-Gi~igs~~~~~~~~~v~nv~i~n~~~~~~~ 290 (299)
..-.|++|+|.++. ||.+- -+ .+...|.++.|.+..
T Consensus 272 ~~~ki~~n~feg~~iGIhlt-ag-------segn~~~gNsFigNr 308 (408)
T COG3420 272 NYNKIRGNSFEGCAIGIHLT-AG-------SEGNEIIGNSFIGNR 308 (408)
T ss_pred chhhhccceeecceEEEEEe-cc-------ccCcEEecccccccc
Confidence 44566677776654 66551 11 334456666666643
No 77
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=95.94 E-value=1.2 Score=42.03 Aligned_cols=88 Identities=13% Similarity=0.133 Sum_probs=66.8
Q ss_pred EEccCcEEEEeEEEEcCC-CceEEEeceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEe
Q 043061 170 FYGCKNVRVSSLRFRNSQ-KMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKN 248 (299)
Q Consensus 170 ~~~~~nv~I~~v~i~ns~-~~~i~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~n 248 (299)
+.+=.+|++.|+.|...+ .-++.+....++++.||.+.+. +...+ +......|++|+|...--|| ...+...
T Consensus 117 V~gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf----~g~cl--~~~~~~~VrGC~F~~C~~gi-~~~~~~~ 189 (386)
T PF01696_consen 117 VVGMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGF----HGTCL--ESWAGGEVRGCTFYGCWKGI-VSRGKSK 189 (386)
T ss_pred EeeeeeeEEEEEEEecCCccceeEEEecceEEEEeeEEecC----cceeE--EEcCCcEEeeeEEEEEEEEe-ecCCcce
Confidence 344578999999999888 6678888889999999999973 33334 44468899999997655455 3445678
Q ss_pred EEEEeeEEcCCc-eEEE
Q 043061 249 VRATDIICGPGH-GISI 264 (299)
Q Consensus 249 i~I~n~~~~~~~-Gi~i 264 (299)
+.|++|+|.... ||..
T Consensus 190 lsVk~C~FekC~igi~s 206 (386)
T PF01696_consen 190 LSVKKCVFEKCVIGIVS 206 (386)
T ss_pred EEeeheeeeheEEEEEe
Confidence 999999999876 7743
No 78
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=95.02 E-value=0.042 Score=34.91 Aligned_cols=39 Identities=21% Similarity=0.150 Sum_probs=18.9
Q ss_pred EEEeceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEE
Q 043061 191 LTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIR 234 (299)
Q Consensus 191 i~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~ 234 (299)
|.+..|.+.+|++.+|.. +.|||++..+.+.+|+++++.
T Consensus 2 I~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~ 40 (44)
T TIGR03804 2 IYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTAS 40 (44)
T ss_pred EEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEE
Confidence 334444444455555543 344555555555555555443
No 79
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=94.98 E-value=0.23 Score=44.01 Aligned_cols=98 Identities=17% Similarity=0.189 Sum_probs=66.7
Q ss_pred eEEEeceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEc-CCccEEecC-----CcEeEEEEeeEEcC-CceE
Q 043061 190 HLTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRT-GDDCISIVS-----GSKNVRATDIICGP-GHGI 262 (299)
Q Consensus 190 ~i~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~-gDD~iai~s-----gs~ni~I~n~~~~~-~~Gi 262 (299)
.+.+....+..|++++|.++. ....-|+.+.++ +.+|+||+|.+ ..++|.+.. ...+++|+++.+.. ..||
T Consensus 90 n~tI~~~~~~~i~GvtItN~n-~~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi 167 (246)
T PF07602_consen 90 NVTIILANNATISGVTITNPN-IARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTGI 167 (246)
T ss_pred eEEEEecCCCEEEEEEEEcCC-CCcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcCe
Confidence 355566678899999999862 125568888887 99999999986 567886633 34677888888875 4699
Q ss_pred EEeecCCCCCcccEEEEEEEeeEEeCCceeEEE
Q 043061 263 SIGSLGAGNSEAFVSNVLVNRARLSGTTNGVRI 295 (299)
Q Consensus 263 ~igs~~~~~~~~~v~nv~i~n~~~~~~~~gi~i 295 (299)
++-..-.. .+ ..|+|+.+.+...||.+
T Consensus 168 ~i~~~~~~-~~-----n~I~NN~I~~N~~Gi~~ 194 (246)
T PF07602_consen 168 SISDNAAP-VE-----NKIENNIIENNNIGIVA 194 (246)
T ss_pred EEEcccCC-cc-----ceeeccEEEeCCcCeEe
Confidence 88443222 12 24466666655557654
No 80
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=94.84 E-value=0.038 Score=35.09 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=32.4
Q ss_pred eeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEc
Q 043061 217 GIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICG 257 (299)
Q Consensus 217 Gi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~ 257 (299)
||.++.+.+.+|+++++....+||.+... ++.+|+++++.
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~s-~~n~i~~N~~~ 40 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTDS-SNNTLSNNTAS 40 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEeC-CCCEeECCEEE
Confidence 78899899999999999998889998774 56666666654
No 81
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=92.16 E-value=6.1 Score=33.35 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=70.9
Q ss_pred CcEEEEeEEEEcCCCceEEEece---------eeEEEEeEEEECCCCCC---CCCeeeeeceecEEEEeeEEEcC-CccE
Q 043061 174 KNVRVSSLRFRNSQKMHLTFQYC---------VNVRALNLLVIAPGNSP---NTDGIHVTGTQNILIKNCVIRTG-DDCI 240 (299)
Q Consensus 174 ~nv~I~~v~i~ns~~~~i~~~~s---------~nv~i~~~~I~~~~~~~---~~DGi~~~~s~~v~I~n~~i~~g-DD~i 240 (299)
++|.|-+-+|.+...++|.+... ++|.|.+..|...+..+ ...||-..+-.+.+|||++|..- .-+|
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai 81 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAI 81 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceE
Confidence 46778888888888888877644 47888888888765544 45688888888999999999753 3344
Q ss_pred Eec--------CCc-EeEEEEeeEEcC---------CceEEEeecCCCCCcccEEEEEEEeeEEeCCcee
Q 043061 241 SIV--------SGS-KNVRATDIICGP---------GHGISIGSLGAGNSEAFVSNVLVNRARLSGTTNG 292 (299)
Q Consensus 241 ai~--------sgs-~ni~I~n~~~~~---------~~Gi~igs~~~~~~~~~v~nv~i~n~~~~~~~~g 292 (299)
+-. .++ --.++||+.+.+ +.|..|--.-. .-..+.++|+-+.+...|
T Consensus 82 ~~~y~~~~~sp~gsgyttivRNNII~NT~~r~~~~~GtGYgv~N~L~-----~tHsFvLenNclYnN~aG 146 (198)
T PF08480_consen 82 AQMYPDYDLSPKGSGYTTIVRNNIIVNTRKRKSSPAGTGYGVINYLP-----ETHSFVLENNCLYNNAAG 146 (198)
T ss_pred EEEecccccCCCCCceEEEEEcceEeeeeecccCCCCceeEEEecCC-----CcceEEEEccceeccCcC
Confidence 442 122 235666666532 23444322111 124556677766665443
No 82
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=91.17 E-value=1.9 Score=37.40 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=67.3
Q ss_pred eEEEEccCcEEEEeEEEEcCCCceEEEeceeeEEEEeEEEECCCCCCCCCeeeeecee-cEEEEeeEEEcCCccEEecCC
Q 043061 167 AVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQ-NILIKNCVIRTGDDCISIVSG 245 (299)
Q Consensus 167 ~i~~~~~~nv~I~~v~i~ns~~~~i~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~-~v~I~n~~i~~gDD~iai~sg 245 (299)
++.+. ...+|+|+.|-.+..-+||... +.+|+|+.... -..|.+.+.+.. .++|.++-.++.+|=|-=..+
T Consensus 56 vF~le--~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwed----VcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng 127 (215)
T PF03211_consen 56 VFILE--DGATLKNVIIGANQADGIHCKG--SCTLENVWWED----VCEDAATFKGDGGTVTIIGGGARNASDKVFQHNG 127 (215)
T ss_dssp SEEEE--TTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-S
T ss_pred EEEec--CCCEEEEEEEcCCCcCceEEcC--CEEEEEEEecc----cceeeeEEcCCCceEEEeCCcccCCCccEEEecC
Confidence 34444 4788888888666666787776 77888888776 356777777555 778888877777776666666
Q ss_pred cEeEEEEeeEEcCCceEEEeecCCCCCc-ccEEEEEEEeeEE
Q 043061 246 SKNVRATDIICGPGHGISIGSLGAGNSE-AFVSNVLVNRARL 286 (299)
Q Consensus 246 s~ni~I~n~~~~~~~Gi~igs~~~~~~~-~~v~nv~i~n~~~ 286 (299)
.-.++|+|-+.. ..|--+-|-|.-... ..-++|.+++...
T Consensus 128 ~Gtv~I~nF~a~-d~GKl~RSCGnC~~~~~~~r~v~v~~~~~ 168 (215)
T PF03211_consen 128 GGTVTIKNFYAE-DFGKLYRSCGNCSNNGGPRRHVVVNNVVA 168 (215)
T ss_dssp SEEEEEEEEEEE-EEEEEEEE-TTETS----EEEEEEEEEEE
T ss_pred ceeEEEEeEEEc-CCCEEEEeCCCCCCCCCcceEEEEeeEEe
Confidence 667888773332 334334444432222 2456666666543
No 83
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=88.75 E-value=15 Score=31.88 Aligned_cols=110 Identities=15% Similarity=0.216 Sum_probs=63.8
Q ss_pred eEEEEccCcEEEEeEEEEcCCCceEEEecee-eEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEc-------CCc
Q 043061 167 AVTFYGCKNVRVSSLRFRNSQKMHLTFQYCV-NVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRT-------GDD 238 (299)
Q Consensus 167 ~i~~~~~~nv~I~~v~i~ns~~~~i~~~~s~-nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~-------gDD 238 (299)
.|+... +.+|+||+.++-....+.+.... .++|.+.-.....| -=|...+.-.+.|.|.+... .-+
T Consensus 77 GIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~D----KV~Q~Ng~Gtv~I~nF~a~d~GKl~RSCGn 150 (215)
T PF03211_consen 77 GIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNASD----KVFQHNGGGTVTIKNFYAEDFGKLYRSCGN 150 (215)
T ss_dssp -EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEEEE----EEEEE-SSEEEEEEEEEEEEEEEEEEE-TT
T ss_pred ceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCCCc----cEEEecCceeEEEEeEEEcCCCEEEEeCCC
Confidence 588888 99999999999999889988777 55665554443110 12223344467777754431 111
Q ss_pred cEEecCCcEeEEEEeeEEcCCceEEEeecCCCCCcccEEEEEEEe
Q 043061 239 CISIVSGSKNVRATDIICGPGHGISIGSLGAGNSEAFVSNVLVNR 283 (299)
Q Consensus 239 ~iai~sgs~ni~I~n~~~~~~~Gi~igs~~~~~~~~~v~nv~i~n 283 (299)
|-.-....+++.|++.....++.+. |=...+++.++|+++.+..
T Consensus 151 C~~~~~~~r~v~v~~~~~~~~~~~~-giN~N~gD~ati~~~~~~~ 194 (215)
T PF03211_consen 151 CSNNGGPRRHVVVNNVVAGPGNSLV-GINRNYGDTATISNSCIKG 194 (215)
T ss_dssp ETS----EEEEEEEEEEEEEEEEEE-EEEEGGTTTEEEEEEEEEE
T ss_pred CCCCCCcceEEEEeeEEecCCcEEE-EEECCCCCeEEEEEEEecC
Confidence 2111112356888877666554322 2233456778999999886
No 84
>PLN02773 pectinesterase
Probab=85.68 E-value=12 Score=34.49 Aligned_cols=96 Identities=13% Similarity=0.094 Sum_probs=56.4
Q ss_pred EEeceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCC------------------cEeEEEE
Q 043061 192 TFQYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSG------------------SKNVRAT 252 (299)
Q Consensus 192 ~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sg------------------s~ni~I~ 252 (299)
....++++.++|++|.+.........+-+. .+..+.+.||.|...-|-+....+ .....++
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~gr~yf~~c~IeG~VDFIFG~g~a~Fe 176 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLRDCYIEGSVDFIFGNSTALLE 176 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCCCCEEEEeeEEeecccEEeeccEEEEE
Confidence 344678999999999986432222333332 356788888888877676666543 3455666
Q ss_pred eeEEcC-Cce-EEEeecCCCCCcccEEEEEEEeeEEeCCc
Q 043061 253 DIICGP-GHG-ISIGSLGAGNSEAFVSNVLVNRARLSGTT 290 (299)
Q Consensus 253 n~~~~~-~~G-i~igs~~~~~~~~~v~nv~i~n~~~~~~~ 290 (299)
+|++.. ..| |.--+. .....-....|.+|++.+..
T Consensus 177 ~c~i~s~~~g~ITA~~r---~~~~~~~GfvF~~c~it~~~ 213 (317)
T PLN02773 177 HCHIHCKSAGFITAQSR---KSSQESTGYVFLRCVITGNG 213 (317)
T ss_pred eeEEEEccCcEEECCCC---CCCCCCceEEEEccEEecCC
Confidence 666642 223 111110 01123456889999998743
No 85
>PRK09752 adhesin; Provisional
Probab=85.02 E-value=38 Score=36.62 Aligned_cols=119 Identities=10% Similarity=0.088 Sum_probs=65.0
Q ss_pred eEEEEccCcEEEEeEEEEcCCC----ceEEEecee-----eEEEEeEEEECCCC-CCCCCeeeeeceecEEEEeeEEEcC
Q 043061 167 AVTFYGCKNVRVSSLRFRNSQK----MHLTFQYCV-----NVRALNLLVIAPGN-SPNTDGIHVTGTQNILIKNCVIRTG 236 (299)
Q Consensus 167 ~i~~~~~~nv~I~~v~i~ns~~----~~i~~~~s~-----nv~i~~~~I~~~~~-~~~~DGi~~~~s~~v~I~n~~i~~g 236 (299)
+|+-.....+.|.++.|.+... -.|...... .+.|.++.|.+..- ..+.-+|... ..++.|.+|.|.+.
T Consensus 114 AIya~~~~~itI~ns~F~nN~A~g~GGAIYa~G~n~~g~v~l~I~NS~F~nN~A~~G~GGAIYs~-ng~vtIsnS~F~nN 192 (1250)
T PRK09752 114 AIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTI-NNDVYLSDVIFDNN 192 (1250)
T ss_pred EEEecCcceeEEeeeEEEccccCCCCCEEEEcccCCCcceEEEEEecEEEccccccCCCCEEEEc-cCcEEEEeeEEeCC
Confidence 4555445568888888886642 235444321 37788888876321 1122234332 34788888888643
Q ss_pred C----------ccEEecCC---------cEeEEEEeeEEcC----CceEEEeecCCCCCcccEEEEEEEeeEEeC
Q 043061 237 D----------DCISIVSG---------SKNVRATDIICGP----GHGISIGSLGAGNSEAFVSNVLVNRARLSG 288 (299)
Q Consensus 237 D----------D~iai~sg---------s~ni~I~n~~~~~----~~Gi~igs~~~~~~~~~v~nv~i~n~~~~~ 288 (299)
- ++-+|... +.++.|.||.|.. ..|=+|-... ......-|+++.+.+..+
T Consensus 193 ~A~~s~s~s~g~GGAIY~~~~~~~~~~~s~~liI~NSsFtnNsA~~~GGAIY~~s--~t~p~~~n~~~d~~~~~~ 265 (1250)
T PRK09752 193 QAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIINNTAFTNNTAEGYGGAIYTNS--ATAPYLIDISVDDSYSQN 265 (1250)
T ss_pred cccccccccCCCceEEEeccCCCccccccceEEEeccEEEccccCCcceEEEecC--CCCceEEEEEeccccccC
Confidence 1 34444321 3467788888853 2243442231 123446677777766544
No 86
>PLN02480 Probable pectinesterase
Probab=84.58 E-value=20 Score=33.56 Aligned_cols=139 Identities=14% Similarity=0.109 Sum_probs=85.3
Q ss_pred ecEEEE-e--ceEEeCCCc----ccccccccCCCceeEEEEccCcEEEEeEEEEcCC---------CceEEE-eceeeEE
Q 043061 138 NNFRVE-G--GGTIDGNGK----VWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQ---------KMHLTF-QYCVNVR 200 (299)
Q Consensus 138 ~ni~I~-G--~G~idG~g~----~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~---------~~~i~~-~~s~nv~ 200 (299)
+.|+|. . .-+|.|.+. --|......+...+.....+.+++++||+|+|+. ...+-+ ...+++.
T Consensus 89 E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~ 168 (343)
T PLN02480 89 EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVA 168 (343)
T ss_pred EEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEE
Confidence 677784 2 246666552 1122211111122455667799999999999983 133444 5689999
Q ss_pred EEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcCC-------ce-EEEeecCCCCC
Q 043061 201 ALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPG-------HG-ISIGSLGAGNS 272 (299)
Q Consensus 201 i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~~-------~G-i~igs~~~~~~ 272 (299)
+.||++... -|-+-.. ..+-..+||+|+..=| +--|.....++||++..- .| |.--+. .
T Consensus 169 f~~c~f~G~-----QDTLy~~-~gR~yf~~C~IeG~VD---FIFG~g~a~fe~C~i~s~~~~~~~~~G~ITA~~r----~ 235 (343)
T PLN02480 169 FYHCAFYST-----HNTLFDY-KGRHYYHSCYIQGSID---FIFGRGRSIFHNCEIFVIADRRVKIYGSITAHNR----E 235 (343)
T ss_pred EEeeEEecc-----cceeEeC-CCCEEEEeCEEEeeee---EEccceeEEEEccEEEEecCCCCCCceEEEcCCC----C
Confidence 999999973 3444322 3468889999986433 334557889999998521 23 322221 1
Q ss_pred cccEEEEEEEeeEEeCC
Q 043061 273 EAFVSNVLVNRARLSGT 289 (299)
Q Consensus 273 ~~~v~nv~i~n~~~~~~ 289 (299)
...-....|.||++.+.
T Consensus 236 ~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 236 SEDNSGFVFIKGKVYGI 252 (343)
T ss_pred CCCCCEEEEECCEEccc
Confidence 13345789999999874
No 87
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=82.72 E-value=32 Score=33.84 Aligned_cols=81 Identities=10% Similarity=0.032 Sum_probs=47.0
Q ss_pred EEEEccCcEEEEeEEEEcCCCc----eEEE-eceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEcCCccEEe
Q 043061 168 VTFYGCKNVRVSSLRFRNSQKM----HLTF-QYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISI 242 (299)
Q Consensus 168 i~~~~~~nv~I~~v~i~ns~~~----~i~~-~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai 242 (299)
-.....+++..+||+|+|.... .+-+ ...+...+.+|+|.... |-+.... .+-..++|+|...=|-|
T Consensus 264 T~~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~Q-----DTLy~~~-~rqyy~~C~I~G~vDFI-- 335 (497)
T PLN02698 264 TFTITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQ-----DTLYAAA-LRQFYRECDIYGTIDFI-- 335 (497)
T ss_pred eEEEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccc-----chheeCC-CcEEEEeeEEEeccceE--
Confidence 3444567888888888887542 2222 45677888888887633 3232222 24566777776433322
Q ss_pred cCCcEeEEEEeeEEc
Q 043061 243 VSGSKNVRATDIICG 257 (299)
Q Consensus 243 ~sgs~ni~I~n~~~~ 257 (299)
-|.....++||++.
T Consensus 336 -FG~a~avf~~C~i~ 349 (497)
T PLN02698 336 -FGNAAAVFQNCYLF 349 (497)
T ss_pred -ecccceeecccEEE
Confidence 23345677777663
No 88
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=81.68 E-value=18 Score=34.71 Aligned_cols=114 Identities=12% Similarity=0.114 Sum_probs=52.5
Q ss_pred CcEEEEeEEEEcCCCce--EEEeceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEc-C----CccEEecCCc
Q 043061 174 KNVRVSSLRFRNSQKMH--LTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRT-G----DDCISIVSGS 246 (299)
Q Consensus 174 ~nv~I~~v~i~ns~~~~--i~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~-g----DD~iai~sgs 246 (299)
.+.+|++-.|.++-+=. |....| .-++++.+|.. ..-++-+-..++-+|++++|-. + ..||-|..
T Consensus 199 s~t~Ve~NlFe~cdGE~EIISvKS~-~N~ir~Ntf~e-----s~G~ltlRHGn~n~V~gN~FiGng~~~~tGGIRIi~-- 270 (425)
T PF14592_consen 199 SNTTVENNLFERCDGEVEIISVKSS-DNTIRNNTFRE-----SQGSLTLRHGNRNTVEGNVFIGNGVKEGTGGIRIIG-- 270 (425)
T ss_dssp ---EEES-EEEEE-SSSEEEEEESB-T-EEES-EEES------SSEEEEEE-SS-EEES-EEEE-SSSS-B--EEE-S--
T ss_pred cceeeecchhhhcCCceeEEEeecC-CceEeccEEEe-----ccceEEEecCCCceEeccEEecCCCcCCCCceEEec--
Confidence 44556665555554322 333333 34455555554 3445666666777787777643 2 23566655
Q ss_pred EeEEEEeeEEcCC------ceEEE--eecCC-CCCcccEEEEEEEeeEEeCCceeEEE
Q 043061 247 KNVRATDIICGPG------HGISI--GSLGA-GNSEAFVSNVLVNRARLSGTTNGVRI 295 (299)
Q Consensus 247 ~ni~I~n~~~~~~------~Gi~i--gs~~~-~~~~~~v~nv~i~n~~~~~~~~gi~i 295 (299)
++=+|.|+.+.+. .++++ |...+ .+....|.|+.|.+++|.++..+|.+
T Consensus 271 ~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~~~i~~ 328 (425)
T PF14592_consen 271 EGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCKSPIHF 328 (425)
T ss_dssp BS-EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-SEEEES
T ss_pred CCcEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccCCceEE
Confidence 4456667776431 23442 32222 23567899999999999999887764
No 89
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=80.70 E-value=20 Score=30.35 Aligned_cols=90 Identities=14% Similarity=0.130 Sum_probs=53.9
Q ss_pred eeEEEEeEEEECCCCCCCCCeeeeec---------eecEEEEeeEEEc-CCc------cEEecCCcEeEEEEeeEEcCCc
Q 043061 197 VNVRALNLLVIAPGNSPNTDGIHVTG---------TQNILIKNCVIRT-GDD------CISIVSGSKNVRATDIICGPGH 260 (299)
Q Consensus 197 ~nv~i~~~~I~~~~~~~~~DGi~~~~---------s~~v~I~n~~i~~-gDD------~iai~sgs~ni~I~n~~~~~~~ 260 (299)
++|+|-|..|... ..-||.+.+ .++|.|+++.|.. |-. +=.+.+|-.|..|+|+.|.+..
T Consensus 2 ~dIEIYnN~I~~T----~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y 77 (198)
T PF08480_consen 2 DDIEIYNNTIYNT----YGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVY 77 (198)
T ss_pred CceEEecceeecc----cCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccc
Confidence 4677777777763 456676643 3599999999964 321 1224445678999999998875
Q ss_pred eEEEeec---CCCCCcccEEEEEEEeeEEeCCc
Q 043061 261 GISIGSL---GAGNSEAFVSNVLVNRARLSGTT 290 (299)
Q Consensus 261 Gi~igs~---~~~~~~~~v~nv~i~n~~~~~~~ 290 (299)
+-+|.-. ....-...-.-..|+|+.+.++.
T Consensus 78 ~aai~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 78 HAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred cceEEEEecccccCCCCCceEEEEEcceEeeee
Confidence 4333221 10000112334677777777754
No 90
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=79.78 E-value=2 Score=22.86 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=13.3
Q ss_pred EEEEEeeEEeCCce-eEEEEe
Q 043061 278 NVLVNRARLSGTTN-GVRIKT 297 (299)
Q Consensus 278 nv~i~n~~~~~~~~-gi~ik~ 297 (299)
+++|++|++.+... ||.++.
T Consensus 3 ~~~i~~n~i~~~~~~Gi~i~~ 23 (26)
T smart00710 3 NVTIENNTIRNNGGDGIYIGG 23 (26)
T ss_pred CEEEECCEEEeCCCCcEEEec
Confidence 56677777777665 777664
No 91
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=76.28 E-value=17 Score=33.29 Aligned_cols=112 Identities=16% Similarity=0.185 Sum_probs=64.8
Q ss_pred EEEEccCcEEEEeEEEEcCCCc----eEE-EeceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEcCCccEEe
Q 043061 168 VTFYGCKNVRVSSLRFRNSQKM----HLT-FQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISI 242 (299)
Q Consensus 168 i~~~~~~nv~I~~v~i~ns~~~----~i~-~~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai 242 (299)
......+++.++||+|+|+... .+- ....+++.+.+|++.. .-|-+.... .+..++||+|+..-|-| .
T Consensus 81 T~~v~a~~f~~~nit~~Nt~g~~~~qAvAl~~~~d~~~f~~c~~~g-----~QDTL~~~~-~r~y~~~c~IeG~vDFI-f 153 (298)
T PF01095_consen 81 TFSVNADDFTAENITFENTAGPSGGQAVALRVSGDRAAFYNCRFLG-----YQDTLYANG-GRQYFKNCYIEGNVDFI-F 153 (298)
T ss_dssp SEEE-STT-EEEEEEEEEHCSGSG----SEEET-TSEEEEEEEEE------STT-EEE-S-SEEEEES-EEEESEEEE-E
T ss_pred cccccccceeeeeeEEecCCCCcccceeeeeecCCcEEEEEeEEcc-----ccceeeecc-ceeEEEeeEEEecCcEE-E
Confidence 4455689999999999997532 121 2467889999999997 455555443 36788999998765533 2
Q ss_pred cCCcEeEEEEeeEEcC-----CceEEEeecCCCCCcccEEEEEEEeeEEeCC
Q 043061 243 VSGSKNVRATDIICGP-----GHGISIGSLGAGNSEAFVSNVLVNRARLSGT 289 (299)
Q Consensus 243 ~sgs~ni~I~n~~~~~-----~~Gi~igs~~~~~~~~~v~nv~i~n~~~~~~ 289 (299)
+ .....++||++.. +.+-.|--.++ .+...-....|.+|++...
T Consensus 154 G--~~~a~f~~c~i~~~~~~~~~~~~ItA~~r-~~~~~~~G~vF~~c~i~~~ 202 (298)
T PF01095_consen 154 G--NGTAVFENCTIHSRRPGGGQGGYITAQGR-TSPSQKSGFVFDNCTITGD 202 (298)
T ss_dssp E--SSEEEEES-EEEE--SSTSSTEEEEEE----CTTSS-EEEEES-EEEES
T ss_pred C--CeeEEeeeeEEEEeccccccceeEEeCCc-cccCCCeEEEEEEeEEecC
Confidence 3 3467899998852 12222211111 1123466889999999974
No 92
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=74.95 E-value=28 Score=34.64 Aligned_cols=65 Identities=8% Similarity=-0.029 Sum_probs=47.6
Q ss_pred EEeceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcC
Q 043061 192 TFQYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGP 258 (299)
Q Consensus 192 ~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~ 258 (299)
.....+++..+|++|.+.+.......+-+. .+.++.+.||.|....|-+...++ .-.++||.+.+
T Consensus 314 ~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~~--rqyy~~C~I~G 379 (537)
T PLN02506 314 VAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHSL--RQFYRECEIYG 379 (537)
T ss_pred EEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecCC--ceEEEeeEEec
Confidence 345678899999999987643344445443 467999999999988887776664 45888888754
No 93
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=74.59 E-value=33 Score=34.29 Aligned_cols=70 Identities=11% Similarity=0.057 Sum_probs=48.2
Q ss_pred eceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcCCceEEEe
Q 043061 194 QYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIG 265 (299)
Q Consensus 194 ~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~~~Gi~ig 265 (299)
...+++..+|++|.+.+.......+-+. .+..+.+.||.|....|-+...++ .-.+++|.+.++--+-+|
T Consensus 327 v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~--rq~y~~C~I~GtVDFIFG 397 (553)
T PLN02708 327 VLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSL--RQFYKSCRIQGNVDFIFG 397 (553)
T ss_pred EEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCCC--ceEEEeeEEeecCCEEec
Confidence 4567888999999886543333444443 467888899999888887776654 457888888775444343
No 94
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=73.83 E-value=88 Score=30.24 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=21.3
Q ss_pred ccEEEecCCeeEEeeeeeeeCCCccceEEEEe
Q 043061 81 EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIY 112 (299)
Q Consensus 81 g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~ 112 (299)
++.+++-+| +|....|.+ .|.+.|.+.
T Consensus 48 e~LIFlH~G-~~e~~~i~I----~sdvqiiGA 74 (625)
T KOG1777|consen 48 EKLIFLHEG-THETETIRI----TSDVQIIGA 74 (625)
T ss_pred cceEEEEec-cccceEEEE----cCCeeEecc
Confidence 468899999 999888888 677777643
No 95
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=73.24 E-value=11 Score=34.19 Aligned_cols=107 Identities=20% Similarity=0.248 Sum_probs=62.6
Q ss_pred cCcEEEEeEEEEcCCCceEEEeceeeEEEEeEEEEC--CCCCCC----CCeeeeeceecEEEEeeEEEcCCccEEecCC-
Q 043061 173 CKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIA--PGNSPN----TDGIHVTGTQNILIKNCVIRTGDDCISIVSG- 245 (299)
Q Consensus 173 ~~nv~I~~v~i~ns~~~~i~~~~s~nv~i~~~~I~~--~~~~~~----~DGi~~~~s~~v~I~n~~i~~gDD~iai~sg- 245 (299)
++|+.+.|++-.++. .-+++...++..|+|++-.+ |..+.. .--+.+.+|.|..|+|..+.+.. ++-|+-|
T Consensus 245 vknfvvanitgs~cr-qlvhvengkhfvirnvkaknitpdfskkagidnatvaiygcdnfvidni~mvnsa-gmligygv 322 (464)
T PRK10123 245 VKNFVVANITGSDCR-QLIHVENGKHFVIRNIKAKNITPDFSKKAGIDNATVAIYGCDNFVIDNIEMINSA-GMLIGYGV 322 (464)
T ss_pred hhhEEEEeccCcChh-heEEecCCcEEEEEeeeccccCCCchhhcCCCcceEEEEcccceEEecccccccc-ccEEEeee
Confidence 356666666655554 34777888888888887664 332221 11245678888888888776643 2323222
Q ss_pred --------cEeEEEEeeEEcCC------ceEEEeecCCCCCcccEEEEEEEeeEEe
Q 043061 246 --------SKNVRATDIICGPG------HGISIGSLGAGNSEAFVSNVLVNRARLS 287 (299)
Q Consensus 246 --------s~ni~I~n~~~~~~------~Gi~igs~~~~~~~~~v~nv~i~n~~~~ 287 (299)
.+|....|+...+. .||.|. .|.- .+=|.+.|..|.
T Consensus 323 ikg~ylsipqnfkln~i~ldn~~l~yklrgiqis-sgna-----tsfvaitn~~mk 372 (464)
T PRK10123 323 IKGKYLSIPQNFKLNNIQLDNTHLAYKLRGIQIS-AGNA-----VSFVALTNIEMK 372 (464)
T ss_pred eeccEecccccceeceEeecccccceeeeeeEec-cCCc-----ceEEEEeeeehh
Confidence 35666666665542 488883 3332 445566665554
No 96
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=72.47 E-value=39 Score=33.87 Aligned_cols=63 Identities=11% Similarity=0.034 Sum_probs=46.8
Q ss_pred eceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcC
Q 043061 194 QYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGP 258 (299)
Q Consensus 194 ~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~ 258 (299)
...+++..+|++|.+.+.......+-+. .+....+.+|.|....|-+...++ .-.++||.+.+
T Consensus 337 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~G 400 (566)
T PLN02713 337 VVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSL--RQFYRECDIYG 400 (566)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCC--CEEEEeeEEec
Confidence 4558899999999986544444455543 567889999999988888777764 56888888754
No 97
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=71.74 E-value=36 Score=26.35 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=8.0
Q ss_pred cCcEEEEeEEEEc
Q 043061 173 CKNVRVSSLRFRN 185 (299)
Q Consensus 173 ~~nv~I~~v~i~n 185 (299)
..+++++++++.+
T Consensus 44 ~~~~~~~G~~~~~ 56 (146)
T smart00722 44 SNDVRVDGITIGG 56 (146)
T ss_pred CCCCEEECeEEEe
Confidence 3455666666665
No 98
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=71.47 E-value=38 Score=33.78 Aligned_cols=65 Identities=11% Similarity=0.052 Sum_probs=43.7
Q ss_pred eceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcCCc
Q 043061 194 QYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGH 260 (299)
Q Consensus 194 ~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~~~ 260 (299)
...+++..+|++|.+.........+-+. .+....+.||.|....|-+..+++ .-.++||.+.+.-
T Consensus 320 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtV 385 (548)
T PLN02301 320 AVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHSL--RQFYRDSYITGTV 385 (548)
T ss_pred EECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecCC--cEEEEeeEEEecc
Confidence 4557788888888876543333444443 456888888888887777766653 4588888887643
No 99
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=71.00 E-value=36 Score=33.80 Aligned_cols=114 Identities=13% Similarity=0.077 Sum_probs=75.2
Q ss_pred eEEEEccCcEEEEeEEEEcCCCc----eEEE-eceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEcCCccEE
Q 043061 167 AVTFYGCKNVRVSSLRFRNSQKM----HLTF-QYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCIS 241 (299)
Q Consensus 167 ~i~~~~~~nv~I~~v~i~ns~~~----~i~~-~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~gDD~ia 241 (299)
+-.....+++..+|++|+|.... .+-+ ...+...+.+|+|.... |-+.... .+-..++|+|+..=|
T Consensus 298 aT~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q-----DTLy~~~-~Rqyy~~C~IeGtVD--- 368 (530)
T PLN02933 298 ATVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQ-----DTLYVHS-AKQFYRECDIYGTID--- 368 (530)
T ss_pred eEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecc-----cccccCC-CceEEEeeEEecccc---
Confidence 56667789999999999998642 2333 45889999999999743 3333322 356899999986433
Q ss_pred ecCCcEeEEEEeeEEcC-----CceEEEeecCCCCCcccEEEEEEEeeEEeCCc
Q 043061 242 IVSGSKNVRATDIICGP-----GHGISIGSLGAGNSEAFVSNVLVNRARLSGTT 290 (299)
Q Consensus 242 i~sgs~ni~I~n~~~~~-----~~Gi~igs~~~~~~~~~v~nv~i~n~~~~~~~ 290 (299)
+-.|.....++||++.. +..-.|---++ .....-..+.|.+|++....
T Consensus 369 FIFG~a~avFq~C~i~~~~~~~~~~~~iTAq~r-~~~~~~tGfvf~~C~it~~~ 421 (530)
T PLN02933 369 FIFGNAAVVFQNCSLYARKPNPNHKIAFTAQSR-NQSDQPTGISIISSRILAAP 421 (530)
T ss_pred eeccCceEEEeccEEEEeccCCCCceEEEecCC-CCCCCCceEEEEeeEEecCC
Confidence 44455678999998841 11112211111 12334568999999999843
No 100
>PLN02197 pectinesterase
Probab=70.57 E-value=36 Score=34.22 Aligned_cols=64 Identities=11% Similarity=0.091 Sum_probs=42.1
Q ss_pred eceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcCC
Q 043061 194 QYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPG 259 (299)
Q Consensus 194 ~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~~ 259 (299)
...+++..+|++|.+.+.......+-+. .+....+.+|.|....|-+...++ .-.++||.+.+.
T Consensus 361 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~--Rqyy~~C~I~Gt 425 (588)
T PLN02197 361 VESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNG--RQFYRNIVVSGT 425 (588)
T ss_pred EECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecCC--CEEEEeeEEEec
Confidence 4567778888888875543333444443 456788888888877777766653 457778877654
No 101
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=70.26 E-value=49 Score=32.82 Aligned_cols=66 Identities=8% Similarity=0.082 Sum_probs=47.7
Q ss_pred EEEeceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcC
Q 043061 191 LTFQYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGP 258 (299)
Q Consensus 191 i~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~ 258 (299)
......+++..+|++|.+.+.......+-+. .+....+.+|.|....|-+...++ .-.+++|.+.+
T Consensus 307 Tv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~~--Rqyy~~C~I~G 373 (529)
T PLN02170 307 TVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHSK--RQFYRETDITG 373 (529)
T ss_pred EEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCCC--CEEEEeeEEcc
Confidence 3445668899999999986543333444443 467899999999998887776664 55779998764
No 102
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=70.17 E-value=16 Score=28.43 Aligned_cols=69 Identities=10% Similarity=0.023 Sum_probs=49.4
Q ss_pred EccCcEEEEeEEEEcCC---CceEEEeceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEe-eEEEcCCccEEe
Q 043061 171 YGCKNVRVSSLRFRNSQ---KMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKN-CVIRTGDDCISI 242 (299)
Q Consensus 171 ~~~~nv~I~~v~i~ns~---~~~i~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n-~~i~~gDD~iai 242 (299)
..+.+..+.+-.+.+.. .+++.+..+.+..+.+..+. .. .. .+|++++......+.+ ..+....|++.+
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi~~ 145 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TN-ND-GDGNYLSDSSGGDLIGNRIYDNGRDGIAV 145 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-ee-cC-CCCEEEeCCCCcEEEcceeEecCCCcEee
Confidence 66778888888887764 78888888777666666665 21 12 7999999888888887 555666666643
No 103
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=69.06 E-value=41 Score=33.52 Aligned_cols=64 Identities=8% Similarity=0.014 Sum_probs=46.3
Q ss_pred EeceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcC
Q 043061 193 FQYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGP 258 (299)
Q Consensus 193 ~~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~ 258 (299)
....+++..+|++|.+.........+-+. .+..+.+.+|.|....|-+...+ ..-.+++|.+.+
T Consensus 313 ~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~Rqyy~~C~I~G 377 (541)
T PLN02416 313 AVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHS--FRQFYRECDIYG 377 (541)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCC--CceEEEeeEEee
Confidence 34568899999999986654344444443 46789999999998888776655 456888888754
No 104
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=68.79 E-value=39 Score=33.29 Aligned_cols=64 Identities=8% Similarity=-0.031 Sum_probs=46.2
Q ss_pred EeceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcC
Q 043061 193 FQYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGP 258 (299)
Q Consensus 193 ~~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~ 258 (299)
....+++..+|++|.+.+.......+-+. .+.+..+.+|.|...-|-+...++ .-.++||.+.+
T Consensus 266 ~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~--rqyy~~C~I~G 330 (497)
T PLN02698 266 TITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAAL--RQFYRECDIYG 330 (497)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCCC--cEEEEeeEEEe
Confidence 34567899999999986543333444443 467899999999988888877764 45778888753
No 105
>PLN02916 pectinesterase family protein
Probab=68.77 E-value=58 Score=32.07 Aligned_cols=96 Identities=10% Similarity=0.048 Sum_probs=62.8
Q ss_pred EeceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcC------Cce----
Q 043061 193 FQYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGP------GHG---- 261 (299)
Q Consensus 193 ~~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~------~~G---- 261 (299)
....+++..+|++|.+.........+-+. .+....+.+|.|....|-+...++ .-.+++|.+.+ |.|
T Consensus 273 ~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~a~avF 350 (502)
T PLN02916 273 GVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSL--RQFYRDCHIYGTIDFIFGDAAVVF 350 (502)
T ss_pred EEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCCC--CEEEEecEEecccceeccCceEEE
Confidence 34567889999999986644444445543 567899999999998888877764 46788888754 222
Q ss_pred --EEEeec----------CC-CC-CcccEEEEEEEeeEEeCCc
Q 043061 262 --ISIGSL----------GA-GN-SEAFVSNVLVNRARLSGTT 290 (299)
Q Consensus 262 --i~igs~----------~~-~~-~~~~v~nv~i~n~~~~~~~ 290 (299)
..|-+. ++ +. ++..-....|.||++.+..
T Consensus 351 q~C~I~~~~~~~~~~g~ITAq~r~~~~~~tGfvf~~C~it~~~ 393 (502)
T PLN02916 351 QNCDIFVRRPMDHQGNMITAQGRDDPHENTGISIQHSRVRASP 393 (502)
T ss_pred ecCEEEEecCCCCCcceEEecCCCCCCCCcEEEEEeeEEecCc
Confidence 112111 11 11 2344568899999998753
No 106
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=68.58 E-value=50 Score=32.87 Aligned_cols=64 Identities=6% Similarity=-0.045 Sum_probs=46.0
Q ss_pred EeceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcC
Q 043061 193 FQYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGP 258 (299)
Q Consensus 193 ~~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~ 258 (299)
....+++..+|++|.+.+.......+-+. .+....+.+|.|....|-+...++ .-.++||.+.+
T Consensus 309 ~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~--rq~y~~c~I~G 373 (538)
T PLN03043 309 AVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSL--RQFYRECDIYG 373 (538)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCC--cEEEEeeEEee
Confidence 34557899999999986543344455554 456889999999988887776664 46788888754
No 107
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=68.32 E-value=65 Score=31.95 Aligned_cols=64 Identities=6% Similarity=-0.001 Sum_probs=46.0
Q ss_pred EeceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcC
Q 043061 193 FQYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGP 258 (299)
Q Consensus 193 ~~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~ 258 (299)
....+++..+|++|.+.+.......+-+. .+....+.+|.|....|-+...++ .-.++||.+.+
T Consensus 289 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~--Rqyy~~C~I~G 353 (520)
T PLN02201 289 AVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTM--RQFYRECRITG 353 (520)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCC--CEEEEeeEEee
Confidence 34567888999999986643344445543 457899999999988888777664 45678888754
No 108
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=67.27 E-value=52 Score=32.99 Aligned_cols=63 Identities=5% Similarity=-0.014 Sum_probs=45.6
Q ss_pred eceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcC
Q 043061 194 QYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGP 258 (299)
Q Consensus 194 ~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~ 258 (299)
...+++..+|++|.+.+.......+-+. .+....+.||.|....|-+...++ .-.++||.+.+
T Consensus 342 v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~--rq~y~~C~I~G 405 (565)
T PLN02468 342 VFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHAQ--RQFYRECNIYG 405 (565)
T ss_pred EECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCCC--ceEEEeeEEec
Confidence 4567899999999986643334444443 567899999999988887776654 45688888754
No 109
>PLN02314 pectinesterase
Probab=67.07 E-value=50 Score=33.28 Aligned_cols=96 Identities=13% Similarity=0.098 Sum_probs=62.2
Q ss_pred EeceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcC------Cce----
Q 043061 193 FQYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGP------GHG---- 261 (299)
Q Consensus 193 ~~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~------~~G---- 261 (299)
....+++..+|++|.+.+.......+-+. .+....+.||.|....|-+...++ .-.++||.+.+ |.|
T Consensus 361 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~--rq~y~~C~I~GtvDFIFG~a~avf 438 (586)
T PLN02314 361 AAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSN--RQFYRDCDITGTIDFIFGNAAVVF 438 (586)
T ss_pred EEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCCC--CEEEEeeEEEeccceeccCceeee
Confidence 34567889999999986543344445543 567889999999988887777664 45788888754 222
Q ss_pred --EEEeec----------CCCC--CcccEEEEEEEeeEEeCCc
Q 043061 262 --ISIGSL----------GAGN--SEAFVSNVLVNRARLSGTT 290 (299)
Q Consensus 262 --i~igs~----------~~~~--~~~~v~nv~i~n~~~~~~~ 290 (299)
..|-+. ++-+ +...-..+.|.+|++.+..
T Consensus 439 ~~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 439 QNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQRCTISAFG 481 (586)
T ss_pred eccEEEEecCCCCCCceEecCCCCCCCCCCEEEEEeeEEecCC
Confidence 222221 1111 2344567899999998854
No 110
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=66.48 E-value=50 Score=33.30 Aligned_cols=65 Identities=8% Similarity=0.016 Sum_probs=43.2
Q ss_pred eceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcCCc
Q 043061 194 QYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGH 260 (299)
Q Consensus 194 ~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~~~ 260 (299)
...+++..+|++|.+.+.......+-+. .+....+.+|.|....|-+..+++ .-.+++|.+.++-
T Consensus 359 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~--rq~y~~c~I~Gtv 424 (587)
T PLN02313 359 AVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSN--RQFFVKCHITGTV 424 (587)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCC--cEEEEeeEEeecc
Confidence 3456788888888876543333444443 456788888888877777666654 4478888877643
No 111
>PLN02682 pectinesterase family protein
Probab=66.31 E-value=83 Score=29.76 Aligned_cols=111 Identities=11% Similarity=0.095 Sum_probs=73.9
Q ss_pred eEEEEccCcEEEEeEEEEcCCC---------ceEEE-eceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEcC
Q 043061 167 AVTFYGCKNVRVSSLRFRNSQK---------MHLTF-QYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTG 236 (299)
Q Consensus 167 ~i~~~~~~nv~I~~v~i~ns~~---------~~i~~-~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~g 236 (299)
+.....++++..+||+|+|+.. ..+-+ ...++..+.+|++... -|-+-.. ..+-..+||+|+..
T Consensus 156 AT~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~-----QDTLy~~-~gRqyf~~C~IeG~ 229 (369)
T PLN02682 156 ATFAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGA-----QDTLYDH-LGRHYFKDCYIEGS 229 (369)
T ss_pred eEEEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEecc-----ccceEEC-CCCEEEEeeEEccc
Confidence 5666778899999999999742 12333 4689999999999974 3434322 34678999999865
Q ss_pred CccEEecCCcEeEEEEeeEEcC---Cce-EEEeecCCCCCcccEEEEEEEeeEEeCC
Q 043061 237 DDCISIVSGSKNVRATDIICGP---GHG-ISIGSLGAGNSEAFVSNVLVNRARLSGT 289 (299)
Q Consensus 237 DD~iai~sgs~ni~I~n~~~~~---~~G-i~igs~~~~~~~~~v~nv~i~n~~~~~~ 289 (299)
=| +--|.....+++|++.. ..| |.--+. .....-....|.||++.+.
T Consensus 230 VD---FIFG~g~a~Fe~C~I~s~~~~~G~ITA~~r---~~~~~~~GfvF~~C~itg~ 280 (369)
T PLN02682 230 VD---FIFGNGLSLYEGCHLHAIARNFGALTAQKR---QSVLEDTGFSFVNCKVTGS 280 (369)
T ss_pred cc---EEecCceEEEEccEEEEecCCCeEEecCCC---CCCCCCceEEEEeeEecCC
Confidence 44 33445689999999852 234 222111 1123346889999999874
No 112
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=65.12 E-value=64 Score=32.55 Aligned_cols=65 Identities=6% Similarity=0.030 Sum_probs=43.0
Q ss_pred eceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcCCc
Q 043061 194 QYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGH 260 (299)
Q Consensus 194 ~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~~~ 260 (299)
...+++..+|++|.+.+.......+-+. .+....+.||.|....|-+...+ ..-.++||.+.+.-
T Consensus 369 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtV 434 (596)
T PLN02745 369 ALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT--HRQFYRSCVITGTI 434 (596)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC--CcEEEEeeEEEeec
Confidence 3567788888888875432233334443 45688888888887777666554 35678888877643
No 113
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=65.08 E-value=74 Score=30.65 Aligned_cols=68 Identities=10% Similarity=0.092 Sum_probs=47.0
Q ss_pred EEEeceeeEEEEeEEEECCCCC----CCCCeeeee-ceecEEEEeeEEEcCCccEEecCC----------cEeEEEEeeE
Q 043061 191 LTFQYCVNVRALNLLVIAPGNS----PNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSG----------SKNVRATDII 255 (299)
Q Consensus 191 i~~~~s~nv~i~~~~I~~~~~~----~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sg----------s~ni~I~n~~ 255 (299)
......+++.++|++|.+.... .+...+-+. ....+.+.+|.|...-|-+...+. ...-.++||.
T Consensus 200 Tv~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~Cy 279 (422)
T PRK10531 200 VFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSY 279 (422)
T ss_pred EEEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCE
Confidence 3445778999999999986531 122333332 457899999999988888777431 2368899998
Q ss_pred EcC
Q 043061 256 CGP 258 (299)
Q Consensus 256 ~~~ 258 (299)
+.+
T Consensus 280 IeG 282 (422)
T PRK10531 280 IEG 282 (422)
T ss_pred Eee
Confidence 854
No 114
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=64.74 E-value=53 Score=33.07 Aligned_cols=96 Identities=13% Similarity=0.120 Sum_probs=61.6
Q ss_pred EeceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcC------Cce----
Q 043061 193 FQYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGP------GHG---- 261 (299)
Q Consensus 193 ~~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~------~~G---- 261 (299)
....+++..+|++|.+.+.......+-+. .+....+.||.|....|-+...++ .=.++||.+.+ |.|
T Consensus 356 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~a~avf 433 (587)
T PLN02484 356 AATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSN--RQFFRECDIYGTVDFIFGNAAVVL 433 (587)
T ss_pred EEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCCC--cEEEEecEEEeccceecccceeEE
Confidence 34567888999999986543334455544 567889999999988887776654 55788888754 222
Q ss_pred --EEEee----------cCCCC--CcccEEEEEEEeeEEeCCc
Q 043061 262 --ISIGS----------LGAGN--SEAFVSNVLVNRARLSGTT 290 (299)
Q Consensus 262 --i~igs----------~~~~~--~~~~v~nv~i~n~~~~~~~ 290 (299)
..|-+ .++-+ +...-..+.|.+|++.+..
T Consensus 434 q~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~~ 476 (587)
T PLN02484 434 QNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAAS 476 (587)
T ss_pred eccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEeeEEecCC
Confidence 11211 11111 2234568899999998743
No 115
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=64.70 E-value=52 Score=32.76 Aligned_cols=95 Identities=8% Similarity=0.034 Sum_probs=61.0
Q ss_pred eceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcCC------ce-----
Q 043061 194 QYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPG------HG----- 261 (299)
Q Consensus 194 ~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~~------~G----- 261 (299)
...+++..+|++|.+.+.......+-+. .+....+.+|.|....|-+...++ .-.++||.+.+. .|
T Consensus 309 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~a~avf~ 386 (539)
T PLN02995 309 IEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHSQ--RQFYRECYIYGTVDFIFGNAAAVFQ 386 (539)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCCC--ceEEEeeEEeeccceEecccceEEe
Confidence 4567888999999986543334455544 467899999999988887766654 458888887542 22
Q ss_pred -EEEeec----------CCCC--CcccEEEEEEEeeEEeCCc
Q 043061 262 -ISIGSL----------GAGN--SEAFVSNVLVNRARLSGTT 290 (299)
Q Consensus 262 -i~igs~----------~~~~--~~~~v~nv~i~n~~~~~~~ 290 (299)
..|-+. ++-+ ....-..+.|.||++.+..
T Consensus 387 ~C~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 428 (539)
T PLN02995 387 NCIILPRRPLKGQANVITAQGRADPFQNTGISIHNSRILPAP 428 (539)
T ss_pred ccEEEEecCCCCCcceEecCCCCCCCCCceEEEEeeEEecCC
Confidence 222222 1111 2234568899999998843
No 116
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=64.21 E-value=81 Score=31.14 Aligned_cols=95 Identities=8% Similarity=0.064 Sum_probs=61.7
Q ss_pred eceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcCC------ce-----
Q 043061 194 QYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPG------HG----- 261 (299)
Q Consensus 194 ~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~~------~G----- 261 (299)
...+++..+|++|.+.+.......+-+. .+....+.+|.|....|-+...+ ..-.+++|.+.+. .|
T Consensus 281 v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~--~RqyyrdC~I~GtVDFIFG~a~avFq 358 (509)
T PLN02488 281 SNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHR--DRQFYRECFITGTVDFICGNAAAVFQ 358 (509)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCC--CCEEEEeeEEeeccceEecceEEEEE
Confidence 4467788999999986543344555554 56789999999998888777665 4568888887542 22
Q ss_pred -EEEeec----------CCCC--CcccEEEEEEEeeEEeCCc
Q 043061 262 -ISIGSL----------GAGN--SEAFVSNVLVNRARLSGTT 290 (299)
Q Consensus 262 -i~igs~----------~~~~--~~~~v~nv~i~n~~~~~~~ 290 (299)
..|-+. ++-+ ++..-..+.|.+|++....
T Consensus 359 ~C~I~sr~~~~~~~~~ITAq~R~~~~~~tGfvf~~C~it~~~ 400 (509)
T PLN02488 359 FCQIVARQPMMGQSNVITAQSRESKDDNSGFSIQKCNITASS 400 (509)
T ss_pred ccEEEEecCCCCCCEEEEeCCCCCCCCCcEEEEEeeEEecCC
Confidence 222221 1111 1234467889999988754
No 117
>PLN02176 putative pectinesterase
Probab=63.01 E-value=71 Score=29.84 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=72.4
Q ss_pred EEEEccCcEEEEeEEEEcCCC----------ceEE-EeceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEcC
Q 043061 168 VTFYGCKNVRVSSLRFRNSQK----------MHLT-FQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTG 236 (299)
Q Consensus 168 i~~~~~~nv~I~~v~i~ns~~----------~~i~-~~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~g 236 (299)
-....+.++..+||+|+|... ..+- ....+...+.+|++... -|-+-.. ..+-..++|+|+..
T Consensus 116 T~~v~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~-----QDTLy~~-~gRqyf~~CyIeG~ 189 (340)
T PLN02176 116 TFTSYASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGF-----QDTLFDG-KGRHYYKRCVISGG 189 (340)
T ss_pred EEEEECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecc-----cceeEeC-CcCEEEEecEEEec
Confidence 344568999999999999842 2222 24578999999999973 3444332 34788999999875
Q ss_pred CccEEecCCcEeEEEEeeEEcC---------Cce-EEEeecCCCCCcccEEEEEEEeeEEeCC
Q 043061 237 DDCISIVSGSKNVRATDIICGP---------GHG-ISIGSLGAGNSEAFVSNVLVNRARLSGT 289 (299)
Q Consensus 237 DD~iai~sgs~ni~I~n~~~~~---------~~G-i~igs~~~~~~~~~v~nv~i~n~~~~~~ 289 (299)
=|-| -|.....++||++.. ..| |.--+.. ....-....|.||++.+.
T Consensus 190 VDFI---FG~a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~~r~---~~~~~~GfvF~~C~itg~ 246 (340)
T PLN02176 190 IDFI---FGYAQSIFEGCTLKLTLGIYPPNEPYGTITAQGRP---SPSDKGGFVFKDCTVTGV 246 (340)
T ss_pred ccEE---ecCceEEEeccEEEEecccCCCCCCcEEEEeCCCC---CCCCCcEEEEECCEEccC
Confidence 4533 345679999998852 123 2221110 123345889999999874
No 118
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=61.53 E-value=74 Score=31.97 Aligned_cols=95 Identities=13% Similarity=0.137 Sum_probs=60.9
Q ss_pred eceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcC------Cce-----
Q 043061 194 QYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGP------GHG----- 261 (299)
Q Consensus 194 ~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~------~~G----- 261 (299)
...+++..+|++|.+.........+-+. .+....+.+|.|....|-+...++ .-.+++|.+.+ |.|
T Consensus 344 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~a~avf~ 421 (572)
T PLN02990 344 INGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHSH--RQFFRDCTVSGTVDFIFGDAKVVLQ 421 (572)
T ss_pred EEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCCC--cEEEEeeEEecccceEccCceEEEE
Confidence 3567889999999986543344445544 567899999999988887776654 56778888754 222
Q ss_pred -EEEee----------cCCCC--CcccEEEEEEEeeEEeCCc
Q 043061 262 -ISIGS----------LGAGN--SEAFVSNVLVNRARLSGTT 290 (299)
Q Consensus 262 -i~igs----------~~~~~--~~~~v~nv~i~n~~~~~~~ 290 (299)
..|-+ .++-+ +...-..+.|.+|++.+..
T Consensus 422 ~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 422 NCNIVVRKPMKGQSCMITAQGRSDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred ccEEEEecCCCCCceEEEeCCCCCCCCCceEEEEeeEEecCc
Confidence 11211 11111 1234468899999998854
No 119
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=61.49 E-value=53 Score=33.59 Aligned_cols=95 Identities=12% Similarity=0.083 Sum_probs=61.2
Q ss_pred eceeeEEEEeEEEECCCCCCCCCeeeee-ceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcC------Cce-----
Q 043061 194 QYCVNVRALNLLVIAPGNSPNTDGIHVT-GTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGP------GHG----- 261 (299)
Q Consensus 194 ~~s~nv~i~~~~I~~~~~~~~~DGi~~~-~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~------~~G----- 261 (299)
...+++..+|++|.+.+.......+-+. .+....+.||.|....|-+....+ +-.+++|.+.+ |.|
T Consensus 334 v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~a~avfq 411 (670)
T PLN02217 334 IVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSH--RQFYRDCTISGTIDFLFGDAAAVFQ 411 (670)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCCC--cEEEEeCEEEEeccEEecCceEEEE
Confidence 3567888999999986644444455554 567899999999988887776653 56788887643 222
Q ss_pred -EEEeec----------CC-CC-CcccEEEEEEEeeEEeCCc
Q 043061 262 -ISIGSL----------GA-GN-SEAFVSNVLVNRARLSGTT 290 (299)
Q Consensus 262 -i~igs~----------~~-~~-~~~~v~nv~i~n~~~~~~~ 290 (299)
..|-+. ++ +. +...-..+.|.||++.+..
T Consensus 412 ~C~I~~r~~~~~~~~~ITAqgr~~~~~~tGfvf~~C~i~~~~ 453 (670)
T PLN02217 412 NCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGEP 453 (670)
T ss_pred ccEEEEccCCCCCceeEecCCCCCCCCCceEEEEeeEEecCc
Confidence 222221 11 11 2234567899999998853
No 120
>PLN02665 pectinesterase family protein
Probab=60.95 E-value=79 Score=29.85 Aligned_cols=114 Identities=19% Similarity=0.142 Sum_probs=74.1
Q ss_pred eEEEEccCcEEEEeEEEEcCCC---------ceEEE-eceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEcC
Q 043061 167 AVTFYGCKNVRVSSLRFRNSQK---------MHLTF-QYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTG 236 (299)
Q Consensus 167 ~i~~~~~~nv~I~~v~i~ns~~---------~~i~~-~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~g 236 (299)
+-....++++..+||+|+|+.. ..+-+ ...+...+.||++... -|-+... ..+-..++|+|+..
T Consensus 147 aTv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~-----QDTL~~~-~gr~yf~~CyIeG~ 220 (366)
T PLN02665 147 ATLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGF-----QDTLCDD-KGRHFFKDCYIEGT 220 (366)
T ss_pred EEEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccc-----cceeEeC-CCCEEEEeeEEeec
Confidence 5667788999999999999742 22222 4578999999999974 3444322 24678899999865
Q ss_pred CccEEecCCcEeEEEEeeEEcC-CceEEEeecCCCC--CcccEEEEEEEeeEEeCCc
Q 043061 237 DDCISIVSGSKNVRATDIICGP-GHGISIGSLGAGN--SEAFVSNVLVNRARLSGTT 290 (299)
Q Consensus 237 DD~iai~sgs~ni~I~n~~~~~-~~Gi~igs~~~~~--~~~~v~nv~i~n~~~~~~~ 290 (299)
=|-| -|.....+++|++.. ..|. .|...+-+ ....-....|.||++.+..
T Consensus 221 VDFI---FG~g~a~fe~C~i~s~~~~~-~g~ITA~~r~~~~~~~GfvF~~C~itg~~ 273 (366)
T PLN02665 221 VDFI---FGSGKSLYLNTELHVVGDGG-LRVITAQARNSEAEDSGFSFVHCKVTGTG 273 (366)
T ss_pred ccee---ccccceeeEccEEEEecCCC-cEEEEcCCCCCCCCCceEEEEeeEEecCC
Confidence 4433 345678999998852 2220 11122111 1223457889999999864
No 121
>PLN02304 probable pectinesterase
Probab=60.17 E-value=1.3e+02 Score=28.64 Aligned_cols=114 Identities=14% Similarity=0.093 Sum_probs=73.6
Q ss_pred eEEEEccCcEEEEeEEEEcCCC---------ceEEE-eceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEcC
Q 043061 167 AVTFYGCKNVRVSSLRFRNSQK---------MHLTF-QYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTG 236 (299)
Q Consensus 167 ~i~~~~~~nv~I~~v~i~ns~~---------~~i~~-~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~g 236 (299)
+-....++++..+||+|+|+.. ..+-+ ...+...+.+|++... -|-+... ..+-..+||+|...
T Consensus 155 aTv~v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~-----QDTLy~~-~gR~Yf~~CyIeG~ 228 (379)
T PLN02304 155 ASVQVFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGA-----QDTLHDD-RGRHYFKDCYIQGS 228 (379)
T ss_pred EEEEEECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecc-----cceeEeC-CCCEEEEeeEEccc
Confidence 4555667999999999999841 22333 4689999999999974 3444322 34688999999864
Q ss_pred CccEEecCCcEeEEEEeeEEcCC-ceEE------EeecCCC--CCcccEEEEEEEeeEEeCC
Q 043061 237 DDCISIVSGSKNVRATDIICGPG-HGIS------IGSLGAG--NSEAFVSNVLVNRARLSGT 289 (299)
Q Consensus 237 DD~iai~sgs~ni~I~n~~~~~~-~Gi~------igs~~~~--~~~~~v~nv~i~n~~~~~~ 289 (299)
=| +--|.....++||++..- ..+. -|..++- .....-....|.||++.+.
T Consensus 229 VD---FIFG~g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~~Rt~~~~~~GfvF~~C~itg~ 287 (379)
T PLN02304 229 ID---FIFGDARSLYENCRLISMANPVPPGSKSINGAVTAHGRTSKDENTGFSFVNCTIGGT 287 (379)
T ss_pred cc---EEeccceEEEEccEEEEecCCcccccccCceEEEecCCCCCCCCceEEEECCEEccC
Confidence 34 334456789999988521 0000 1222211 1234467899999999874
No 122
>PLN02671 pectinesterase
Probab=59.76 E-value=84 Score=29.60 Aligned_cols=111 Identities=15% Similarity=0.127 Sum_probs=73.0
Q ss_pred eEEEEccCcEEEEeEEEEcCCC--------ceEEE-eceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEcCC
Q 043061 167 AVTFYGCKNVRVSSLRFRNSQK--------MHLTF-QYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGD 237 (299)
Q Consensus 167 ~i~~~~~~nv~I~~v~i~ns~~--------~~i~~-~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~gD 237 (299)
+-....++++..+||+|+|... ..+-+ ...+++.+.+|++.... |-+-.. ...-..++|+|...=
T Consensus 147 aTv~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~Q-----DTLy~~-~gR~yf~~CyIeG~V 220 (359)
T PLN02671 147 ASVTIESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQ-----DTLLDE-TGSHYFYQCYIQGSV 220 (359)
T ss_pred EEEEEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEeccc-----cccEeC-CCcEEEEecEEEEec
Confidence 4566777999999999999831 12222 45789999999999743 333322 236788999998654
Q ss_pred ccEEecCCcEeEEEEeeEEcC---Cce-EEEeecCCCCCcccEEEEEEEeeEEeCC
Q 043061 238 DCISIVSGSKNVRATDIICGP---GHG-ISIGSLGAGNSEAFVSNVLVNRARLSGT 289 (299)
Q Consensus 238 D~iai~sgs~ni~I~n~~~~~---~~G-i~igs~~~~~~~~~v~nv~i~n~~~~~~ 289 (299)
|-| -|.....++||++.. ..| |.--+.. ....-....|.||++.+.
T Consensus 221 DFI---FG~g~A~Fe~C~I~s~~~~~G~ITA~~r~---~~~~~~GfvF~~C~itg~ 270 (359)
T PLN02671 221 DFI---FGNAKSLYQDCVIQSTAKRSGAIAAHHRD---SPTEDTGFSFVNCVINGT 270 (359)
T ss_pred cEE---ecceeEEEeccEEEEecCCCeEEEeeccC---CCCCCccEEEEccEEccC
Confidence 533 245679999999853 224 2222111 123346789999999874
No 123
>PLN02432 putative pectinesterase
Probab=58.41 E-value=1.3e+02 Score=27.44 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=73.3
Q ss_pred eEEEEccCcEEEEeEEEEcCCCc---eEEE-eceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEcCCccEEe
Q 043061 167 AVTFYGCKNVRVSSLRFRNSQKM---HLTF-QYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISI 242 (299)
Q Consensus 167 ~i~~~~~~nv~I~~v~i~ns~~~---~i~~-~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai 242 (299)
+-....++++.++||+|+|.... .+-+ ...+...+.+|++... -|-+-.. ...-..+||+|...=|-|
T Consensus 87 aT~~v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~-----QDTLy~~-~gr~yf~~c~I~G~VDFI-- 158 (293)
T PLN02432 87 PTLSVLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSY-----QDTLLDD-TGRHYYRNCYIEGATDFI-- 158 (293)
T ss_pred eEEEEECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEecc-----cceeEEC-CCCEEEEeCEEEecccEE--
Confidence 45556779999999999998432 2333 4578999999999974 3444332 346789999998654533
Q ss_pred cCCcEeEEEEeeEEcC---Cce-EEEeecCCCCCcccEEEEEEEeeEEeCC
Q 043061 243 VSGSKNVRATDIICGP---GHG-ISIGSLGAGNSEAFVSNVLVNRARLSGT 289 (299)
Q Consensus 243 ~sgs~ni~I~n~~~~~---~~G-i~igs~~~~~~~~~v~nv~i~n~~~~~~ 289 (299)
-|.....+++|++.. .+| |.--+.. ....-....|.+|++.+.
T Consensus 159 -FG~g~a~Fe~c~i~s~~~~~g~itA~~r~---~~~~~~Gfvf~~c~itg~ 205 (293)
T PLN02432 159 -CGNAASLFEKCHLHSLSPNNGAITAQQRT---SASENTGFTFLGCKLTGA 205 (293)
T ss_pred -ecCceEEEEeeEEEEecCCCCeEEecCCC---CCCCCceEEEEeeEEccc
Confidence 345679999999852 234 3221111 123345789999999863
No 124
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=57.59 E-value=21 Score=34.18 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=11.9
Q ss_pred HHHHHHHHHhhcCCccEEEecCCeeEEe---eeeee
Q 043061 67 AFMEAWEEACSSENEAVLVVPNNKIYHL---KPITF 99 (299)
Q Consensus 67 Aiq~Ai~~a~~~~gg~~v~iP~G~~Y~~---~~l~l 99 (299)
-+|.|-.+|. .-|+|.-- |.+ .++.+
T Consensus 19 TLQdaA~aAV-----dgllID~D--Y~Ft~gEtVDF 47 (549)
T PF09251_consen 19 TLQDAATAAV-----DGLLIDVD--YNFTDGETVDF 47 (549)
T ss_dssp SHHHHHHH-S-----SEEEE-S---EE--TTEEEEE
T ss_pred hHHHHHhhhc-----ceEEEecc--ccccCCcEeec
Confidence 3677764322 35666653 544 34555
No 125
>PLN02634 probable pectinesterase
Probab=57.04 E-value=1.2e+02 Score=28.66 Aligned_cols=111 Identities=16% Similarity=0.143 Sum_probs=73.3
Q ss_pred eEEEEccCcEEEEeEEEEcCCC---------ceEEE-eceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEcC
Q 043061 167 AVTFYGCKNVRVSSLRFRNSQK---------MHLTF-QYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTG 236 (299)
Q Consensus 167 ~i~~~~~~nv~I~~v~i~ns~~---------~~i~~-~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~g 236 (299)
+-....++++..+||+|+|+.. ..+-+ ...+...+.+|++... -|-+-.. ..+-..++|+|+..
T Consensus 142 aTv~V~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~-----QDTL~~~-~gR~yf~~CyIeG~ 215 (359)
T PLN02634 142 ASVTVYANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGA-----QDTLCDD-AGRHYFKECYIEGS 215 (359)
T ss_pred eEEEEECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecc-----cceeeeC-CCCEEEEeeEEccc
Confidence 4455667899999999999842 22222 4578899999999973 3444322 34788899999865
Q ss_pred CccEEecCCcEeEEEEeeEEcC---Cce-EEEeecCCCCCcccEEEEEEEeeEEeCC
Q 043061 237 DDCISIVSGSKNVRATDIICGP---GHG-ISIGSLGAGNSEAFVSNVLVNRARLSGT 289 (299)
Q Consensus 237 DD~iai~sgs~ni~I~n~~~~~---~~G-i~igs~~~~~~~~~v~nv~i~n~~~~~~ 289 (299)
=|-| -|.....++||++.. ..| |.- .++ .++..-....|.||++.+.
T Consensus 216 VDFI---FG~g~a~Fe~C~I~s~~~~~g~ITA--~~R-~~~~~~~GfvF~~C~vtg~ 266 (359)
T PLN02634 216 IDFI---FGNGRSMYKDCELHSIASRFGSIAA--HGR-TCPEEKTGFAFVGCRVTGT 266 (359)
T ss_pred ccEE---cCCceEEEeccEEEEecCCCcEEEe--CCC-CCCCCCcEEEEEcCEEcCC
Confidence 4433 345678999999863 224 222 211 1223446789999999874
No 126
>PLN02497 probable pectinesterase
Probab=51.58 E-value=1.6e+02 Score=27.48 Aligned_cols=111 Identities=16% Similarity=0.099 Sum_probs=73.0
Q ss_pred eEEEEccCcEEEEeEEEEcCCC-----------ceEEE-eceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEE
Q 043061 167 AVTFYGCKNVRVSSLRFRNSQK-----------MHLTF-QYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIR 234 (299)
Q Consensus 167 ~i~~~~~~nv~I~~v~i~ns~~-----------~~i~~-~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~ 234 (299)
+-....++++..+||+|+|+.. ..+-+ ...+...+.+|++.... |-+-. ...+-..++|+|+
T Consensus 108 aT~~v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~Q-----DTLy~-~~gRqyf~~C~Ie 181 (331)
T PLN02497 108 PTFSTLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQ-----DTLWD-SDGRHYFKRCTIQ 181 (331)
T ss_pred eEEEEecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccc-----cceee-CCCcEEEEeCEEE
Confidence 3455678999999999999853 12222 45788999999999843 33422 2346889999998
Q ss_pred cCCccEEecCCcEeEEEEeeEEcC-------C-ce-EEEeecCCCCCcccEEEEEEEeeEEeCC
Q 043061 235 TGDDCISIVSGSKNVRATDIICGP-------G-HG-ISIGSLGAGNSEAFVSNVLVNRARLSGT 289 (299)
Q Consensus 235 ~gDD~iai~sgs~ni~I~n~~~~~-------~-~G-i~igs~~~~~~~~~v~nv~i~n~~~~~~ 289 (299)
..=| +--|.....++||++.. + .| |.--+. ..........|.||++.+.
T Consensus 182 G~VD---FIFG~g~a~Fe~C~I~s~~~~~~~~~~g~ITA~~r---~~~~~~~GfvF~~C~itg~ 239 (331)
T PLN02497 182 GAVD---FIFGSGQSIYESCVIQVLGGQLEPGLAGFITAQGR---TNPYDANGFVFKNCLVYGT 239 (331)
T ss_pred eccc---EEccCceEEEEccEEEEecCcCCCCCceEEEecCC---CCCCCCceEEEEccEEccC
Confidence 6544 33445678999998852 1 13 222111 1223456789999999874
No 127
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=50.06 E-value=29 Score=25.90 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=20.4
Q ss_pred ecCCCCC-CC-cccHHHHHHHHHHHhhcCCccEEEecCCeeEEe
Q 043061 53 DDFEAKA-DG-TDDSKAFMEAWEEACSSENEAVLVVPNNKIYHL 94 (299)
Q Consensus 53 ~d~Ga~g-dg-~Ddt~Aiq~Ai~~a~~~~gg~~v~iP~G~~Y~~ 94 (299)
.|||..+ +. ...-..|++||..-.... .+| .+| ||+.
T Consensus 10 ~DFGi~~~~~N~~t~~~F~~aI~~hi~~~--~tv--~~G-tYr~ 48 (92)
T PF11429_consen 10 GDFGITGTNWNKETLEEFEDAIKEHIKNP--DTV--EKG-TYRR 48 (92)
T ss_dssp GGGT------SHHHHHHHHHHHHHHHH-T--T-E--E---BETT
T ss_pred cccCcccCCCChhhHHHHHHHHHHHhCCC--CeE--ecc-ceec
Confidence 5899998 55 666678999998666554 364 489 9985
No 128
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=40.43 E-value=1.1e+02 Score=23.94 Aligned_cols=54 Identities=20% Similarity=0.187 Sum_probs=30.9
Q ss_pred ccEEEecCCeeEEeeeeeeeCCCccceEEEEeeEEEEeeccCCCCCCCceeEEEeeeecEEEEeceEEe
Q 043061 81 EAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENVNNFRVEGGGTID 149 (299)
Q Consensus 81 g~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~l~~~~~~~~~~~~~~~~i~~~~~~ni~I~G~G~id 149 (299)
+..|+||+|.+.++..- . ..=-.|.++|+|.+.++.. +. -.++.|.|.|.|.+.
T Consensus 12 g~~V~I~~g~~v~lD~~-~----~~l~~l~I~G~L~f~~~~~---------~~-L~a~~I~V~~Gg~l~ 65 (125)
T PF10162_consen 12 GDNVVIPAGQTVLLDVS-T----PKLGSLIIGGTLIFDDDRD---------IT-LRAEYILVEGGGRLI 65 (125)
T ss_pred CCEEEECCCCEEEEcCC-C----hheeEEEEEEEEEEccCCC---------CE-EEEEEEEECCCCeEE
Confidence 37999999944444221 1 1112344589999987511 11 234678888754554
No 129
>PRK09752 adhesin; Provisional
Probab=40.31 E-value=5.5e+02 Score=28.36 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=59.5
Q ss_pred EEEeeeecEEEEeceEEeCCCcccccccccCCCceeEEEEccC-----cEEEEeEEEEcCCC----ceEEEeceeeEEEE
Q 043061 132 LVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCK-----NVRVSSLRFRNSQK----MHLTFQYCVNVRAL 202 (299)
Q Consensus 132 i~~~~~~ni~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~-----nv~I~~v~i~ns~~----~~i~~~~s~nv~i~ 202 (299)
|+......++|.. -.+..|-... .. -+|+....+ .+.|.+.+|.+... -+.......++.|.
T Consensus 115 Iya~~~~~itI~n-s~F~nN~A~g-~G-------GAIYa~G~n~~g~v~l~I~NS~F~nN~A~~G~GGAIYs~ng~vtIs 185 (1250)
T PRK09752 115 IFAKENSTLNLTD-VIFSGNVAGG-YG-------GAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLS 185 (1250)
T ss_pred EEecCcceeEEee-eEEEccccCC-CC-------CEEEEcccCCCcceEEEEEecEEEccccccCCCCEEEEccCcEEEE
Confidence 4444444566655 3555553321 11 156665432 37788888887642 12222224568888
Q ss_pred eEEEECCCCC-------CCCCeeeeec--------eecEEEEeeEEEcC-----CccEEecCCcE----eEEEEeeEEc
Q 043061 203 NLLVIAPGNS-------PNTDGIHVTG--------TQNILIKNCVIRTG-----DDCISIVSGSK----NVRATDIICG 257 (299)
Q Consensus 203 ~~~I~~~~~~-------~~~DGi~~~~--------s~~v~I~n~~i~~g-----DD~iai~sgs~----ni~I~n~~~~ 257 (299)
++.|....-. ...-.|.... ...+.|.||.|.+. ..+|...+... |+.+.++...
T Consensus 186 nS~F~nN~A~~s~s~s~g~GGAIY~~~~~~~~~~~s~~liI~NSsFtnNsA~~~GGAIY~~s~t~p~~~n~~~d~~~~~ 264 (1250)
T PRK09752 186 DVIFDNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIINNTAFTNNTAEGYGGAIYTNSATAPYLIDISVDDSYSQ 264 (1250)
T ss_pred eeEEeCCcccccccccCCCceEEEeccCCCccccccceEEEeccEEEccccCCcceEEEecCCCCceEEEEEecccccc
Confidence 8888864210 1122333321 34677888988653 23455554444 3444444443
No 130
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=34.35 E-value=1.1e+02 Score=29.42 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=12.2
Q ss_pred ceeeEEEEeEEEECCCCCCCCCeeeee
Q 043061 195 YCVNVRALNLLVIAPGNSPNTDGIHVT 221 (299)
Q Consensus 195 ~s~nv~i~~~~I~~~~~~~~~DGi~~~ 221 (299)
+|-|+.++++....+ --|||++.
T Consensus 262 RnYnLqF~d~~~i~~----~~DG~Dl~ 284 (549)
T PF09251_consen 262 RNYNLQFRDSVTISP----VWDGFDLG 284 (549)
T ss_dssp -EBS-EEEEEEEES-----SSESEEE-
T ss_pred ceeeEEEeccceEEE----eecceecc
Confidence 556777777776653 34666553
No 131
>PF07986 TBCC: Tubulin binding cofactor C; InterPro: IPR012945 This domain is found in tubulin-binding cofactor C (or tubulin-specific chaperone C) (TBCC). TBCC is a folding cofactor that participates in tubulin biogenesis along with the other tubulin folding cofactors A (TBCA), B (TBCB), E (TBCE) and D (TBCD), as well as the GTP-binding protein Arl2 [, ].; PDB: 2BX6_A 3BH7_B 3BH6_B 2YUH_A.
Probab=32.28 E-value=2.3e+02 Score=21.75 Aligned_cols=31 Identities=23% Similarity=0.465 Sum_probs=16.0
Q ss_pred EEEeeeecEEEEeceEEeCCCcccccccccCCCceeEEEEccCcEEEE
Q 043061 132 LVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVS 179 (299)
Q Consensus 132 i~~~~~~ni~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~ 179 (299)
+.+.+++|-+|.= |.+.| .+.+.+|+|.+|.
T Consensus 23 v~i~~~~~c~i~~-g~v~g----------------sv~i~~c~n~~i~ 53 (120)
T PF07986_consen 23 VHIDNCKNCTIVL-GPVSG----------------SVFIENCENCTII 53 (120)
T ss_dssp EEEES-BS-EEEE-EEECC----------------EEEEES-ECEEEE
T ss_pred EEEeCCCCCEEEE-eecCc----------------eEEEecCCceEEE
Confidence 4556666655544 34443 3667777776665
No 132
>PHA00672 hypothetical protein
Probab=30.80 E-value=83 Score=24.92 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=19.0
Q ss_pred cEEEecCCeeEEeeeeeeeCCCccceEEEEeeEEE
Q 043061 82 AVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIK 116 (299)
Q Consensus 82 ~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~l~ 116 (299)
.++.||+| +-+++.+.- -+++ |.+.|.+.
T Consensus 50 Rei~IPkG-t~LtG~~hk----f~~~-ii~sG~it 78 (152)
T PHA00672 50 RTIRIPAG-VALTGALIK----VSTV-LIFSGHAT 78 (152)
T ss_pred EEEeccCc-eeeeeeeeE----eeEE-EEecccEE
Confidence 47899999 888876533 3555 55555433
No 133
>PF05342 Peptidase_M26_N: M26 IgA1-specific Metallo-endopeptidase N-terminal region; InterPro: IPR008006 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases corresponds to MEROPS peptidase family M26 (clan MA(E)). The active site residues for members of this family and family M4 occur in the motif HEXXH. The type example is IgA1-specific metalloendopeptidase from Streptococcus sanguis (Q59986 from SWISSPROT).; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0016021 integral to membrane
Probab=29.85 E-value=1e+02 Score=27.44 Aligned_cols=9 Identities=33% Similarity=0.737 Sum_probs=6.4
Q ss_pred cCCeeEEeee
Q 043061 87 PNNKIYHLKP 96 (299)
Q Consensus 87 P~G~~Y~~~~ 96 (299)
|.| +|.++.
T Consensus 154 p~G-ty~Lga 162 (250)
T PF05342_consen 154 PSG-TYKLGA 162 (250)
T ss_pred CCc-eEEECC
Confidence 778 887754
No 134
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=27.52 E-value=54 Score=28.76 Aligned_cols=46 Identities=22% Similarity=0.477 Sum_probs=27.0
Q ss_pred eEEEeecCCCCCCC-cccHH------------HHHHHHHHHhhcCCcc-EEEecCCeeEE
Q 043061 48 KIVNVDDFEAKADG-TDDSK------------AFMEAWEEACSSENEA-VLVVPNNKIYH 93 (299)
Q Consensus 48 ~~~~v~d~Ga~gdg-~Ddt~------------Aiq~Ai~~a~~~~gg~-~v~iP~G~~Y~ 93 (299)
.++|++||...--. .||++ -|-+||+++++..... ++.-|.|+.|.
T Consensus 34 ~~~n~Rdf~~dkh~~VDD~pyGGG~GMvmk~epi~~Al~~~~~~~~~~vi~lsP~G~~f~ 93 (240)
T COG0336 34 EVVNPRDFATDKHKTVDDTPYGGGAGMVMKPEPLFDALDSVKAAKKAKVILLSPQGKPFT 93 (240)
T ss_pred EeecHHHhccCcCcccCCccCCCCCccEeccHHHHHHHHHHHhccCCeEEEECCCCCccC
Confidence 46666677655444 55554 5889997666543212 23348896553
No 135
>TIGR03119 one_C_fhcD formylmethanofuran--tetrahydromethanopterin N-formyltransferase. Members of this protein family are the FhcD protein of tetrahydromethanopterin (H4MPT)-dependent C-1 carrier metabolism. In the archaea, FhcD is designated formylmethanofuran--tetrahydromethanopterin N-formyltransferase, while in bacteria it is commonly designated as formyltransferase/hydrolase complex subunit D. FhcD is essential for one-carbon metabolism in at least three groups of prokaryotes: methanogenic archaea, sulfate-reducing archaea, and methylotrophic bacteria.
Probab=27.21 E-value=68 Score=28.86 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=26.6
Q ss_pred CC-ccc--HHHHHHHHHHHhhcCCccEEEecCCeeE--Eeeee
Q 043061 60 DG-TDD--SKAFMEAWEEACSSENEAVLVVPNNKIY--HLKPI 97 (299)
Q Consensus 60 dg-~Dd--t~Aiq~Ai~~a~~~~gg~~v~iP~G~~Y--~~~~l 97 (299)
|| +.+ .+|+++.|+++|... +++.|.+| .| .+++-
T Consensus 241 dGl~~~aV~~Amr~Gi~Aa~~~~--Gv~~IsAG-NYGGkLG~~ 280 (287)
T TIGR03119 241 DGLNEAAIAEAMRVGILAATEIP--GVVKITAG-NYGGKLGPH 280 (287)
T ss_pred cCCCHHHHHHHHHHHHHHHhcCC--CeEEEecC-ccCCCCCcc
Confidence 77 555 788999998777544 49999999 88 45553
No 136
>PF02741 FTR_C: FTR, proximal lobe; InterPro: IPR002770 Formylmethanofuran:tetrahyromethanopterin formyltransferase (Ftr) is involved in C1 metabolism in methanogenic archaea, sulphate-reducing archaea and methylotrophic bacteria. It catalyses the following reversible reaction: N-formylmethanofuran + 5,6,7,8-tetrahydromethanopterin = methanofuran + 5-formyl-5,6,7,8-tetrahydromethanopterin Ftr from the thermophilic methanogen Methanopyrus kandleri (optimum growth temperature 98 degrees C) is a hyperthermophilic enzyme that is absolutely dependent on the presence of lyotropic salts for activity and thermostability. The crystal structure of Ftr, determined to a reveals a homotetramer composed essentially of two dimers. Each subunit is subdivided into two tightly associated lobes both consisting of a predominantly antiparallel beta sheet flanked by alpha helices forming an alpha/beta sandwich structure. The approximate location of the active site was detected in a region close to the dimer interface []. Ftr from the mesophilic methanogen Methanosarcina barkeri and the sulphate-reducing archaeon Archaeoglobus fulgidus have a similar structure []. In the methylotrophic bacterium Methylobacterium extorquens, Ftr interacts with three other polypeptides to form an Ftr/cyclohydrolase complex which catalyses the hydrolysis of formyl-tetrahydromethanopterin to formate during growth on C1 substrates [].; GO: 0016740 transferase activity, 0006730 one-carbon metabolic process; PDB: 1M5S_B 1M5H_E 1FTR_C 2FHJ_B 2FHK_D.
Probab=25.84 E-value=69 Score=25.99 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=21.8
Q ss_pred cccHHHHHHHHHHHhhcCCccEEEecCCeeE--Eeeee
Q 043061 62 TDDSKAFMEAWEEACSSENEAVLVVPNNKIY--HLKPI 97 (299)
Q Consensus 62 ~Ddt~Aiq~Ai~~a~~~~gg~~v~iP~G~~Y--~~~~l 97 (299)
..-.+|+++.|+++|...| ++.|.+| .| .+++-
T Consensus 109 ~av~~Amr~Gi~Aa~~~~G--v~~IsAG-NYGGkLG~~ 143 (150)
T PF02741_consen 109 EAVAEAMRAGIEAACAVPG--VVRISAG-NYGGKLGPY 143 (150)
T ss_dssp HHHHHHHHHHHHHHTTSTT--EEEEE----STTSSSSE
T ss_pred HHHHHHHHHHHHHHhcCCC--eEEEecC-CcCCccCcc
Confidence 4456789999987775554 9999999 88 45553
No 137
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=23.60 E-value=84 Score=25.48 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=17.5
Q ss_pred HHHHHHHHhhcCCccEEEecCCeeEEe
Q 043061 68 FMEAWEEACSSENEAVLVVPNNKIYHL 94 (299)
Q Consensus 68 iq~Ai~~a~~~~gg~~v~iP~G~~Y~~ 94 (299)
++..|++.|.+.| .++-|.|+||.-
T Consensus 47 ~NeVLkALc~eAG--w~Ve~DGTtyr~ 71 (150)
T PF05687_consen 47 NNEVLKALCREAG--WTVEPDGTTYRK 71 (150)
T ss_pred HHHHHHHHHHhCC--EEEccCCCeecc
Confidence 3444544466665 899999989974
No 138
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=20.62 E-value=1.1e+02 Score=26.03 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=19.0
Q ss_pred ccHHHHHHHHHHHhhcCCccEEEecCCee
Q 043061 63 DDSKAFMEAWEEACSSENEAVLVVPNNKI 91 (299)
Q Consensus 63 Ddt~Aiq~Ai~~a~~~~gg~~v~iP~G~~ 91 (299)
...+++++|.+ +.+++ ..+++||+| +
T Consensus 83 ~~~~~~~~~~~-~L~~G-~~l~IFPEG-t 108 (210)
T cd07986 83 KNRESLREALR-HLKNG-GALIIFPAG-R 108 (210)
T ss_pred hhHHHHHHHHH-HHhCC-CEEEEECCc-c
Confidence 45667888884 56554 488999999 5
No 139
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=20.38 E-value=1.8e+02 Score=23.90 Aligned_cols=11 Identities=0% Similarity=-0.070 Sum_probs=4.8
Q ss_pred EEEEeeccCCC
Q 043061 114 TIKASVRLSDY 124 (299)
Q Consensus 114 ~l~~~~~~~~~ 124 (299)
.......|.+|
T Consensus 140 ~~~Yv~yPa~W 150 (152)
T PF06249_consen 140 RFFYVTYPANW 150 (152)
T ss_dssp EEEEEEESTT-
T ss_pred EEEEEECCCcc
Confidence 34444455555
Done!