Query 043063
Match_columns 301
No_of_seqs 145 out of 1455
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 12:28:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043063.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043063hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 100.0 3.6E-42 7.8E-47 299.6 16.5 295 1-300 21-333 (342)
2 PF00891 Methyltransf_2: O-met 100.0 1.1E-41 2.5E-46 294.3 12.9 222 61-286 2-241 (241)
3 TIGR02716 C20_methyl_CrtF C-20 100.0 8E-39 1.7E-43 285.8 19.3 272 3-296 7-305 (306)
4 PTZ00098 phosphoethanolamine N 99.6 4.8E-14 1E-18 123.2 13.0 141 149-299 42-204 (263)
5 PF01209 Ubie_methyltran: ubiE 99.5 3.2E-15 6.9E-20 127.8 3.0 139 158-301 45-224 (233)
6 TIGR00740 methyltransferase, p 99.5 3.4E-14 7.5E-19 122.5 9.3 132 159-295 52-225 (239)
7 PLN02233 ubiquinone biosynthes 99.5 2.1E-13 4.6E-18 119.0 13.3 141 158-301 71-252 (261)
8 COG2226 UbiE Methylase involve 99.5 1.7E-13 3.8E-18 116.3 11.2 138 159-301 50-228 (238)
9 PRK15451 tRNA cmo(5)U34 methyl 99.5 5.1E-13 1.1E-17 115.8 12.0 136 159-294 55-227 (247)
10 KOG1540 Ubiquinone biosynthesi 99.4 1.5E-12 3.3E-17 109.0 12.0 134 159-299 99-284 (296)
11 PLN02244 tocopherol O-methyltr 99.4 2E-12 4.4E-17 117.0 12.7 137 159-299 117-280 (340)
12 TIGR02752 MenG_heptapren 2-hep 99.4 2.5E-12 5.5E-17 110.3 12.5 144 151-301 37-222 (231)
13 PLN02336 phosphoethanolamine N 99.4 1.8E-12 3.8E-17 122.9 11.7 138 149-299 256-416 (475)
14 PRK14103 trans-aconitate 2-met 99.4 4.7E-12 1E-16 110.3 13.1 142 149-294 19-181 (255)
15 PRK15068 tRNA mo(5)U34 methylt 99.4 5.4E-12 1.2E-16 113.2 10.9 129 160-299 122-276 (322)
16 TIGR00452 methyltransferase, p 99.3 1.1E-11 2.4E-16 110.2 12.2 129 160-299 121-275 (314)
17 PLN02490 MPBQ/MSBQ methyltrans 99.3 5.8E-12 1.3E-16 112.9 10.2 124 160-299 113-258 (340)
18 PRK11873 arsM arsenite S-adeno 99.3 1.5E-11 3.2E-16 108.2 11.8 130 158-297 75-230 (272)
19 PLN02396 hexaprenyldihydroxybe 99.3 8.8E-12 1.9E-16 111.3 9.8 134 160-300 131-292 (322)
20 PRK11207 tellurite resistance 99.3 2E-11 4.2E-16 102.2 10.5 128 148-295 19-168 (197)
21 smart00828 PKS_MT Methyltransf 99.3 2.7E-11 5.9E-16 103.4 11.5 121 162-299 1-146 (224)
22 PRK00216 ubiE ubiquinone/menaq 99.3 6.2E-11 1.3E-15 101.9 12.6 145 151-301 43-229 (239)
23 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 4.8E-11 1E-15 101.5 11.4 137 158-301 37-214 (223)
24 PF13489 Methyltransf_23: Meth 99.2 1.3E-11 2.8E-16 99.4 6.5 123 159-294 21-160 (161)
25 PRK11036 putative S-adenosyl-L 99.2 7E-11 1.5E-15 102.9 11.5 142 150-298 36-208 (255)
26 TIGR02021 BchM-ChlM magnesium 99.2 7.1E-11 1.5E-15 100.5 10.2 135 159-301 54-210 (219)
27 PLN02336 phosphoethanolamine N 99.2 1.1E-10 2.5E-15 110.6 11.8 130 149-294 27-179 (475)
28 PRK06922 hypothetical protein; 99.2 5.8E-11 1.3E-15 113.1 9.1 128 120-248 377-543 (677)
29 PF02353 CMAS: Mycolic acid cy 99.2 8.5E-11 1.8E-15 102.8 9.4 146 148-298 51-218 (273)
30 PRK08317 hypothetical protein; 99.2 2.3E-10 5E-15 98.2 11.4 140 151-297 11-176 (241)
31 PF12847 Methyltransf_18: Meth 99.2 4E-11 8.6E-16 90.7 5.4 82 161-242 2-111 (112)
32 smart00138 MeTrc Methyltransfe 99.2 5.6E-10 1.2E-14 97.5 13.0 88 158-245 97-245 (264)
33 TIGR00477 tehB tellurite resis 99.2 1.6E-10 3.4E-15 96.6 9.1 128 149-296 20-168 (195)
34 PF05891 Methyltransf_PK: AdoM 99.1 8E-11 1.7E-15 97.6 5.5 122 160-296 55-200 (218)
35 PRK01683 trans-aconitate 2-met 99.1 1.3E-09 2.9E-14 95.0 13.5 138 148-292 20-182 (258)
36 PF13847 Methyltransf_31: Meth 99.1 6.1E-11 1.3E-15 95.0 3.7 122 160-289 3-152 (152)
37 COG2230 Cfa Cyclopropane fatty 99.1 6.1E-10 1.3E-14 96.5 9.4 141 149-298 62-224 (283)
38 PLN02232 ubiquinone biosynthes 99.1 7.6E-10 1.6E-14 89.5 8.6 124 174-301 2-151 (160)
39 PRK10258 biotin biosynthesis p 99.0 2.3E-09 5E-14 93.1 11.3 133 149-292 32-182 (251)
40 COG4106 Tam Trans-aconitate me 99.0 1.6E-09 3.5E-14 88.9 9.1 147 148-300 19-188 (257)
41 PRK06202 hypothetical protein; 99.0 2.4E-09 5.3E-14 91.9 10.2 133 159-299 59-224 (232)
42 PRK12335 tellurite resistance 99.0 1.7E-09 3.7E-14 95.8 9.3 127 150-296 111-258 (287)
43 PRK07580 Mg-protoporphyrin IX 99.0 2E-09 4.4E-14 92.1 9.5 133 159-300 62-217 (230)
44 KOG4300 Predicted methyltransf 99.0 1.6E-09 3.4E-14 88.3 7.9 133 160-299 76-234 (252)
45 PRK11705 cyclopropane fatty ac 99.0 2.4E-09 5.2E-14 98.3 10.0 139 149-298 157-313 (383)
46 KOG1270 Methyltransferases [Co 99.0 1E-09 2.3E-14 92.7 6.6 132 161-300 90-252 (282)
47 PRK05785 hypothetical protein; 99.0 4.4E-09 9.5E-14 89.8 10.2 133 161-301 52-215 (226)
48 PF08003 Methyltransf_9: Prote 98.9 4.5E-09 9.8E-14 91.3 9.5 127 161-299 116-269 (315)
49 PF08241 Methyltransf_11: Meth 98.9 7.7E-10 1.7E-14 80.6 3.9 74 165-240 1-95 (95)
50 PF05401 NodS: Nodulation prot 98.9 9.1E-10 2E-14 89.9 4.5 86 158-243 41-147 (201)
51 PF08242 Methyltransf_12: Meth 98.9 6.6E-10 1.4E-14 82.2 3.1 72 165-238 1-99 (99)
52 TIGR03438 probable methyltrans 98.9 3.2E-09 6.9E-14 94.6 7.5 81 160-240 63-175 (301)
53 TIGR03840 TMPT_Se_Te thiopurin 98.9 1.9E-08 4.2E-13 85.0 11.9 118 159-296 33-186 (213)
54 TIGR02072 BioC biotin biosynth 98.9 1.2E-08 2.6E-13 87.5 10.4 120 161-296 35-175 (240)
55 TIGR03587 Pse_Me-ase pseudamin 98.9 5.9E-09 1.3E-13 87.6 7.6 87 159-247 42-147 (204)
56 COG2227 UbiG 2-polyprenyl-3-me 98.9 4.6E-09 1E-13 88.1 6.3 132 160-300 59-218 (243)
57 PLN03075 nicotianamine synthas 98.9 4.4E-09 9.5E-14 92.2 6.4 82 160-242 123-233 (296)
58 PRK04266 fibrillarin; Provisio 98.9 2.9E-08 6.2E-13 84.6 11.2 118 155-299 68-212 (226)
59 PRK05134 bifunctional 3-demeth 98.9 1.5E-08 3.3E-13 86.9 9.6 136 160-300 48-208 (233)
60 PRK08287 cobalt-precorrin-6Y C 98.8 1.7E-08 3.7E-13 83.7 9.2 110 153-298 25-157 (187)
61 PLN02585 magnesium protoporphy 98.8 1.1E-08 2.5E-13 91.1 8.6 129 161-297 145-299 (315)
62 PRK13255 thiopurine S-methyltr 98.8 4.7E-08 1E-12 82.9 10.0 119 159-297 36-190 (218)
63 TIGR01983 UbiG ubiquinone bios 98.8 3.5E-08 7.6E-13 84.1 8.5 132 160-299 45-205 (224)
64 PF13649 Methyltransf_25: Meth 98.7 2.9E-09 6.2E-14 79.2 1.4 73 164-236 1-101 (101)
65 PF06080 DUF938: Protein of un 98.7 1.3E-07 2.7E-12 78.3 10.6 93 204-300 103-195 (204)
66 TIGR00537 hemK_rel_arch HemK-r 98.7 8.6E-08 1.9E-12 78.9 9.2 108 160-297 19-165 (179)
67 PTZ00146 fibrillarin; Provisio 98.6 3.5E-07 7.6E-12 80.0 11.4 117 158-299 130-273 (293)
68 PF04672 Methyltransf_19: S-ad 98.6 3.8E-08 8.2E-13 84.6 4.8 125 160-293 68-232 (267)
69 PF03848 TehB: Tellurite resis 98.6 6.4E-08 1.4E-12 79.8 5.3 96 149-245 20-136 (192)
70 TIGR02081 metW methionine bios 98.6 2.2E-07 4.8E-12 77.5 8.4 126 160-298 13-168 (194)
71 PRK15001 SAM-dependent 23S rib 98.6 2E-07 4.3E-12 85.1 8.1 92 150-242 219-340 (378)
72 PF12147 Methyltransf_20: Puta 98.5 4.9E-07 1.1E-11 78.0 8.6 126 160-295 135-296 (311)
73 KOG2361 Predicted methyltransf 98.5 1.5E-07 3.2E-12 78.8 5.2 130 162-295 73-235 (264)
74 TIGR03534 RF_mod_PrmC protein- 98.5 1.4E-06 3E-11 75.5 10.4 108 161-299 88-243 (251)
75 TIGR00138 gidB 16S rRNA methyl 98.4 2.8E-07 6.2E-12 75.9 5.5 76 161-242 43-142 (181)
76 PF08100 Dimerisation: Dimeris 98.4 1.4E-08 3.1E-13 64.7 -2.1 48 1-48 1-51 (51)
77 PRK13944 protein-L-isoaspartat 98.4 6.8E-07 1.5E-11 75.2 6.6 83 151-242 64-173 (205)
78 COG4976 Predicted methyltransf 98.4 7.4E-07 1.6E-11 74.1 6.4 131 149-299 115-267 (287)
79 PF01739 CheR: CheR methyltran 98.4 4E-07 8.7E-12 75.7 4.8 58 188-245 118-178 (196)
80 PRK11188 rrmJ 23S rRNA methylt 98.4 1.8E-06 4E-11 72.8 8.7 82 158-243 49-166 (209)
81 PRK09489 rsmC 16S ribosomal RN 98.4 1.1E-06 2.5E-11 79.4 7.8 92 151-243 188-304 (342)
82 PRK13942 protein-L-isoaspartat 98.4 9.1E-07 2E-11 74.9 6.6 85 149-242 66-176 (212)
83 PRK14968 putative methyltransf 98.4 3.8E-06 8.3E-11 69.3 10.3 109 159-297 22-173 (188)
84 PF07021 MetW: Methionine bios 98.3 4.5E-06 9.8E-11 68.2 10.0 130 158-300 11-170 (193)
85 PRK00107 gidB 16S rRNA methylt 98.3 1E-06 2.2E-11 72.9 6.2 79 159-243 44-146 (187)
86 TIGR02469 CbiT precorrin-6Y C5 98.3 1.2E-06 2.7E-11 67.0 6.2 79 158-241 17-121 (124)
87 PF05724 TPMT: Thiopurine S-me 98.3 1E-06 2.3E-11 74.6 5.9 120 158-297 35-190 (218)
88 PRK00517 prmA ribosomal protei 98.3 4.3E-06 9.4E-11 72.6 9.3 99 159-297 118-238 (250)
89 PF05175 MTS: Methyltransferas 98.3 1.4E-06 3.1E-11 71.0 5.6 84 160-243 31-141 (170)
90 TIGR00080 pimt protein-L-isoas 98.2 2.9E-06 6.4E-11 71.9 6.7 83 150-241 68-176 (215)
91 PRK09328 N5-glutamine S-adenos 98.2 9.3E-06 2E-10 71.4 10.1 108 158-296 106-261 (275)
92 PRK00121 trmB tRNA (guanine-N( 98.2 1.5E-06 3.3E-11 72.9 4.6 84 160-243 40-157 (202)
93 PRK13256 thiopurine S-methyltr 98.2 7E-06 1.5E-10 69.6 8.2 88 159-246 42-167 (226)
94 PRK14967 putative methyltransf 98.2 1.5E-05 3.2E-10 68.0 10.3 88 158-245 34-162 (223)
95 PRK00377 cbiT cobalt-precorrin 98.2 9.3E-06 2E-10 67.9 8.9 78 158-240 38-143 (198)
96 KOG2899 Predicted methyltransf 98.2 3E-06 6.6E-11 71.0 5.7 40 201-240 164-207 (288)
97 PRK10611 chemotaxis methyltran 98.1 7E-06 1.5E-10 72.2 7.4 56 188-243 204-263 (287)
98 PF03291 Pox_MCEL: mRNA cappin 98.1 3.2E-06 6.9E-11 76.0 5.4 161 133-297 38-267 (331)
99 cd02440 AdoMet_MTases S-adenos 98.1 7.4E-06 1.6E-10 59.6 6.4 78 163-241 1-103 (107)
100 PRK11088 rrmA 23S rRNA methylt 98.1 3.8E-06 8.2E-11 73.9 4.8 75 160-243 85-182 (272)
101 PRK07402 precorrin-6B methylas 98.1 8.9E-06 1.9E-10 67.9 6.8 86 152-244 33-144 (196)
102 TIGR03533 L3_gln_methyl protei 98.1 9.2E-06 2E-10 71.8 7.0 81 160-240 121-249 (284)
103 TIGR00091 tRNA (guanine-N(7)-) 98.1 4.4E-06 9.6E-11 69.6 4.7 83 160-243 16-133 (194)
104 TIGR01177 conserved hypothetic 98.1 1.3E-05 2.8E-10 72.5 7.8 94 149-243 172-295 (329)
105 PRK00312 pcm protein-L-isoaspa 98.0 1.1E-05 2.5E-10 68.1 6.8 84 151-243 70-176 (212)
106 PRK04457 spermidine synthase; 98.0 6.8E-06 1.5E-10 71.8 4.8 83 159-242 65-177 (262)
107 TIGR00406 prmA ribosomal prote 98.0 1.2E-05 2.7E-10 71.2 6.4 79 160-243 159-260 (288)
108 PRK11805 N5-glutamine S-adenos 98.0 1.4E-05 3E-10 71.4 6.6 79 162-240 135-261 (307)
109 PHA03411 putative methyltransf 98.0 2.1E-05 4.5E-10 68.3 7.3 107 161-291 65-208 (279)
110 COG2813 RsmC 16S RNA G1207 met 98.0 2.8E-05 6.1E-10 68.0 7.6 94 149-243 148-267 (300)
111 PF05219 DREV: DREV methyltran 97.9 4.5E-05 9.8E-10 65.2 8.4 128 160-300 94-243 (265)
112 PRK14121 tRNA (guanine-N(7)-)- 97.9 2.4E-05 5.2E-10 71.4 6.8 83 160-243 122-236 (390)
113 PF05148 Methyltransf_8: Hypot 97.9 1.4E-05 3E-10 66.1 4.8 152 97-295 13-183 (219)
114 TIGR00438 rrmJ cell division p 97.9 3E-05 6.5E-10 64.3 6.7 82 157-242 29-146 (188)
115 PF13659 Methyltransf_26: Meth 97.9 6E-06 1.3E-10 62.6 2.2 81 162-242 2-115 (117)
116 KOG1975 mRNA cap methyltransfe 97.9 1.5E-05 3.2E-10 69.6 4.8 100 133-241 99-236 (389)
117 COG2242 CobL Precorrin-6B meth 97.9 3.6E-05 7.8E-10 62.6 6.7 85 153-244 28-137 (187)
118 PF11968 DUF3321: Putative met 97.9 5.4E-05 1.2E-09 63.0 7.7 107 161-298 52-182 (219)
119 KOG3010 Methyltransferase [Gen 97.9 3.5E-05 7.6E-10 64.8 6.5 81 160-243 33-138 (261)
120 PRK00811 spermidine synthase; 97.9 2E-05 4.4E-10 69.6 5.5 83 159-241 75-190 (283)
121 TIGR00536 hemK_fam HemK family 97.9 3.2E-05 6.9E-10 68.5 6.6 79 162-240 116-242 (284)
122 COG2518 Pcm Protein-L-isoaspar 97.9 4.4E-05 9.5E-10 63.4 6.7 86 149-243 62-170 (209)
123 PRK14966 unknown domain/N5-glu 97.9 0.0001 2.2E-09 67.8 9.7 80 160-239 251-378 (423)
124 PF08123 DOT1: Histone methyla 97.8 3.3E-05 7.1E-10 64.7 5.9 94 151-248 34-164 (205)
125 PRK03612 spermidine synthase; 97.8 5.5E-05 1.2E-09 72.5 8.2 84 159-242 296-415 (521)
126 KOG1271 Methyltransferases [Ge 97.8 3.6E-05 7.7E-10 62.0 5.6 107 162-299 69-207 (227)
127 PRK01544 bifunctional N5-gluta 97.8 0.00011 2.3E-09 70.3 9.6 80 161-240 139-267 (506)
128 PRK01581 speE spermidine synth 97.8 2.7E-05 5.9E-10 70.2 5.3 83 159-241 149-267 (374)
129 COG4123 Predicted O-methyltran 97.8 6.4E-05 1.4E-09 64.3 7.3 86 158-243 42-171 (248)
130 COG1352 CheR Methylase of chem 97.8 0.00013 2.8E-09 63.5 9.2 58 188-245 184-244 (268)
131 PF01135 PCMT: Protein-L-isoas 97.8 1.4E-05 2.9E-10 67.3 2.2 87 148-243 61-173 (209)
132 COG2264 PrmA Ribosomal protein 97.7 0.00013 2.8E-09 64.2 8.0 79 159-243 161-264 (300)
133 PLN02366 spermidine synthase 97.7 6.5E-05 1.4E-09 67.0 6.1 84 159-242 90-206 (308)
134 KOG3045 Predicted RNA methylas 97.7 0.00035 7.6E-09 59.4 9.5 110 125-245 141-267 (325)
135 PRK13943 protein-L-isoaspartat 97.7 6.8E-05 1.5E-09 67.2 5.7 83 151-242 72-180 (322)
136 KOG1500 Protein arginine N-met 97.6 8.3E-05 1.8E-09 65.4 5.2 89 150-239 168-279 (517)
137 TIGR00417 speE spermidine synt 97.6 0.0001 2.2E-09 64.7 5.4 83 159-241 71-185 (270)
138 TIGR03704 PrmC_rel_meth putati 97.6 0.00027 5.9E-09 61.3 7.4 81 161-241 87-215 (251)
139 PRK14904 16S rRNA methyltransf 97.5 0.00034 7.4E-09 65.9 8.5 89 158-246 248-381 (445)
140 COG2519 GCD14 tRNA(1-methylade 97.5 0.0003 6.5E-09 60.0 6.5 91 149-247 84-200 (256)
141 PLN02781 Probable caffeoyl-CoA 97.5 0.00024 5.2E-09 61.0 5.8 83 158-245 66-181 (234)
142 TIGR03439 methyl_EasF probable 97.4 0.00046 1E-08 61.8 7.2 94 149-245 68-201 (319)
143 PF05185 PRMT5: PRMT5 arginine 97.3 0.00023 4.9E-09 66.8 4.3 111 121-239 151-294 (448)
144 smart00650 rADc Ribosomal RNA 97.3 0.00038 8.1E-09 56.6 5.0 89 149-243 3-114 (169)
145 TIGR00563 rsmB ribosomal RNA s 97.3 0.00083 1.8E-08 62.9 7.9 95 152-247 231-373 (426)
146 KOG1541 Predicted protein carb 97.3 0.00037 8.1E-09 57.9 4.4 82 161-242 51-160 (270)
147 PRK14901 16S rRNA methyltransf 97.3 0.00072 1.6E-08 63.5 6.9 89 158-246 250-388 (434)
148 PRK14902 16S rRNA methyltransf 97.2 0.001 2.2E-08 62.7 7.9 93 153-246 244-383 (444)
149 PRK10901 16S rRNA methyltransf 97.2 0.001 2.3E-08 62.3 7.7 93 153-246 238-376 (427)
150 PF06325 PrmA: Ribosomal prote 97.2 0.00031 6.7E-09 62.2 3.8 78 160-245 161-262 (295)
151 KOG1331 Predicted methyltransf 97.2 0.0014 3E-08 56.8 7.4 85 160-244 45-145 (293)
152 TIGR00446 nop2p NOL1/NOP2/sun 97.1 0.0018 4E-08 56.6 7.6 89 158-246 69-203 (264)
153 COG4798 Predicted methyltransf 97.1 0.0044 9.6E-08 50.6 8.8 94 188-297 105-205 (238)
154 smart00550 Zalpha Z-DNA-bindin 97.1 0.00043 9.3E-09 47.2 2.7 60 4-69 4-66 (68)
155 PF09339 HTH_IclR: IclR helix- 97.1 0.00022 4.8E-09 45.9 1.1 44 9-56 6-51 (52)
156 PRK14903 16S rRNA methyltransf 97.1 0.0018 3.8E-08 60.8 7.3 89 158-246 235-370 (431)
157 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.0 0.00035 7.6E-09 60.4 2.4 90 192-296 138-238 (256)
158 PF09243 Rsm22: Mitochondrial 96.9 0.0016 3.5E-08 57.2 5.7 96 149-247 23-144 (274)
159 KOG1661 Protein-L-isoaspartate 96.9 0.0011 2.4E-08 54.8 3.7 77 158-242 80-193 (237)
160 PF01022 HTH_5: Bacterial regu 96.8 0.0005 1.1E-08 43.2 1.2 44 8-55 4-47 (47)
161 COG3963 Phospholipid N-methylt 96.8 0.0055 1.2E-07 48.9 7.0 96 148-244 37-158 (194)
162 COG5459 Predicted rRNA methyla 96.8 0.0014 3.1E-08 58.2 4.1 92 154-246 108-229 (484)
163 smart00346 HTH_ICLR helix_turn 96.8 0.0011 2.3E-08 47.9 2.9 56 9-71 8-65 (91)
164 COG1414 IclR Transcriptional r 96.7 0.0011 2.4E-08 57.4 3.0 56 9-71 7-64 (246)
165 TIGR00755 ksgA dimethyladenosi 96.7 0.0039 8.5E-08 54.2 6.0 77 149-230 19-116 (253)
166 COG3315 O-Methyltransferase in 96.7 0.012 2.6E-07 52.3 8.9 133 160-295 92-262 (297)
167 PF14947 HTH_45: Winged helix- 96.6 0.0012 2.6E-08 46.2 2.0 57 10-75 10-66 (77)
168 PRK15090 DNA-binding transcrip 96.6 0.0019 4.1E-08 56.3 3.6 57 9-72 17-74 (257)
169 COG2890 HemK Methylase of poly 96.6 0.0041 8.9E-08 54.8 5.7 78 163-240 113-236 (280)
170 PF08704 GCD14: tRNA methyltra 96.6 0.0033 7.2E-08 54.2 4.6 89 150-246 31-150 (247)
171 PLN02823 spermine synthase 96.5 0.0036 7.8E-08 56.6 5.0 81 160-241 103-219 (336)
172 TIGR02431 pcaR_pcaU beta-ketoa 96.5 0.0022 4.8E-08 55.5 3.3 55 9-72 12-68 (248)
173 PRK14896 ksgA 16S ribosomal RN 96.4 0.0062 1.3E-07 53.1 5.6 67 149-217 19-104 (258)
174 PTZ00338 dimethyladenosine tra 96.4 0.0054 1.2E-07 54.5 5.1 75 149-225 26-122 (294)
175 PLN02672 methionine S-methyltr 96.4 0.008 1.7E-07 61.9 6.9 49 161-209 119-209 (1082)
176 PHA03412 putative methyltransf 96.4 0.0065 1.4E-07 51.8 5.3 83 161-244 50-164 (241)
177 PRK11727 23S rRNA mA1618 methy 96.4 0.0074 1.6E-07 54.1 5.9 131 160-300 114-295 (321)
178 PRK11569 transcriptional repre 96.3 0.0032 7E-08 55.4 3.3 57 9-72 31-89 (274)
179 PLN02476 O-methyltransferase 96.3 0.007 1.5E-07 53.0 5.3 84 158-246 116-232 (278)
180 TIGR00027 mthyl_TIGR00027 meth 96.3 0.026 5.7E-07 49.2 8.9 132 159-295 80-248 (260)
181 PF12840 HTH_20: Helix-turn-he 96.3 0.0014 3E-08 43.6 0.6 47 7-57 11-58 (61)
182 PF02082 Rrf2: Transcriptional 96.3 0.0061 1.3E-07 43.3 3.9 49 18-72 24-72 (83)
183 TIGR00478 tly hemolysin TlyA f 96.2 0.04 8.8E-07 47.0 9.5 131 149-299 64-219 (228)
184 smart00419 HTH_CRP helix_turn_ 96.2 0.0088 1.9E-07 37.3 4.2 41 19-68 8-48 (48)
185 PRK11783 rlmL 23S rRNA m(2)G24 96.2 0.0051 1.1E-07 61.3 4.5 82 160-241 538-655 (702)
186 PRK15128 23S rRNA m(5)C1962 me 96.2 0.0071 1.5E-07 56.0 5.1 83 160-243 220-340 (396)
187 PRK04148 hypothetical protein; 96.2 0.012 2.7E-07 45.6 5.6 84 151-243 8-110 (134)
188 PRK10163 DNA-binding transcrip 96.2 0.0041 8.8E-08 54.6 3.3 56 9-71 28-85 (271)
189 PRK10909 rsmD 16S rRNA m(2)G96 96.2 0.0057 1.2E-07 51.1 3.9 81 160-243 53-160 (199)
190 PF10294 Methyltransf_16: Puta 96.1 0.0075 1.6E-07 49.2 4.2 86 159-246 44-160 (173)
191 COG0421 SpeE Spermidine syntha 96.1 0.011 2.3E-07 52.1 5.4 82 159-241 75-189 (282)
192 PRK13168 rumA 23S rRNA m(5)U19 96.1 0.014 3E-07 55.0 6.3 77 158-240 295-398 (443)
193 KOG1499 Protein arginine N-met 96.0 0.0076 1.7E-07 53.7 4.2 79 161-239 61-164 (346)
194 cd00092 HTH_CRP helix_turn_hel 96.0 0.013 2.7E-07 39.5 4.4 45 17-69 23-67 (67)
195 PRK00274 ksgA 16S ribosomal RN 96.0 0.0075 1.6E-07 53.0 4.1 50 150-200 33-99 (272)
196 PRK09834 DNA-binding transcrip 96.0 0.0057 1.2E-07 53.5 3.1 59 9-74 14-74 (263)
197 PF03141 Methyltransf_29: Puta 96.0 0.0029 6.3E-08 59.0 1.2 46 200-246 176-223 (506)
198 KOG2940 Predicted methyltransf 96.0 0.031 6.6E-07 47.1 7.0 125 161-295 73-225 (325)
199 PF13463 HTH_27: Winged helix 95.9 0.0055 1.2E-07 41.4 2.1 57 11-71 8-68 (68)
200 COG4076 Predicted RNA methylas 95.8 0.015 3.2E-07 47.4 4.6 85 162-246 34-139 (252)
201 PF01596 Methyltransf_3: O-met 95.8 0.0036 7.7E-08 52.6 1.1 83 159-246 44-159 (205)
202 PF01978 TrmB: Sugar-specific 95.8 0.0021 4.4E-08 43.8 -0.4 46 8-57 10-56 (68)
203 PF03059 NAS: Nicotianamine sy 95.7 0.019 4.1E-07 50.2 5.3 81 160-241 120-229 (276)
204 COG4742 Predicted transcriptio 95.7 0.0085 1.8E-07 51.6 3.0 61 7-76 14-74 (260)
205 PF02390 Methyltransf_4: Putat 95.7 0.0091 2E-07 49.7 3.1 81 162-243 19-134 (195)
206 COG3355 Predicted transcriptio 95.6 0.013 2.8E-07 44.7 3.4 45 9-57 30-76 (126)
207 PF01564 Spermine_synth: Sperm 95.6 0.0072 1.6E-07 52.3 2.3 84 159-242 75-191 (246)
208 PRK00536 speE spermidine synth 95.5 0.034 7.5E-07 48.4 5.9 76 159-242 71-171 (262)
209 PRK10857 DNA-binding transcrip 95.5 0.013 2.8E-07 47.4 3.0 48 18-71 24-71 (164)
210 COG2263 Predicted RNA methylas 95.4 0.016 3.4E-07 47.4 3.4 54 160-213 45-118 (198)
211 PF01638 HxlR: HxlR-like helix 95.4 0.015 3.3E-07 41.9 3.0 62 10-75 9-73 (90)
212 PF13601 HTH_34: Winged helix 95.4 0.0043 9.3E-08 43.8 -0.1 62 7-73 1-67 (80)
213 PRK10141 DNA-binding transcrip 95.3 0.012 2.5E-07 44.7 2.2 58 7-69 17-75 (117)
214 KOG3987 Uncharacterized conser 95.3 0.011 2.4E-07 48.9 2.0 132 158-300 109-263 (288)
215 PF13412 HTH_24: Winged helix- 95.2 0.0075 1.6E-07 37.9 0.8 43 8-54 5-48 (48)
216 smart00347 HTH_MARR helix_turn 95.1 0.018 4E-07 41.8 2.8 64 8-75 12-78 (101)
217 PHA00738 putative HTH transcri 95.1 0.014 3E-07 43.0 1.9 60 7-71 13-73 (108)
218 PRK03902 manganese transport t 95.1 0.029 6.4E-07 44.1 3.9 51 17-75 20-70 (142)
219 PLN02589 caffeoyl-CoA O-methyl 94.9 0.039 8.4E-07 47.7 4.5 82 159-245 78-193 (247)
220 TIGR02010 IscR iron-sulfur clu 94.9 0.042 9.2E-07 42.8 4.3 48 18-71 24-71 (135)
221 PF09012 FeoC: FeoC like trans 94.9 0.0093 2E-07 40.7 0.5 43 11-57 5-48 (69)
222 PF04703 FaeA: FaeA-like prote 94.8 0.017 3.6E-07 38.5 1.6 43 11-57 5-49 (62)
223 TIGR00122 birA_repr_reg BirA b 94.8 0.03 6.5E-07 38.1 3.0 56 8-71 2-57 (69)
224 smart00418 HTH_ARSR helix_turn 94.8 0.042 9.1E-07 36.1 3.7 54 11-69 2-55 (66)
225 COG1959 Predicted transcriptio 94.7 0.047 1E-06 43.4 4.2 48 19-72 25-72 (150)
226 COG4122 Predicted O-methyltran 94.6 0.052 1.1E-06 45.8 4.5 84 158-246 57-170 (219)
227 TIGR00479 rumA 23S rRNA (uraci 94.6 0.043 9.3E-07 51.5 4.4 77 158-240 290-394 (431)
228 PF01726 LexA_DNA_bind: LexA D 94.6 0.02 4.4E-07 38.5 1.5 53 1-56 1-59 (65)
229 TIGR00738 rrf2_super rrf2 fami 94.5 0.049 1.1E-06 42.1 3.9 49 18-72 24-72 (132)
230 PRK03522 rumB 23S rRNA methylu 94.5 0.042 9.2E-07 49.3 3.9 50 161-210 174-247 (315)
231 COG4627 Uncharacterized protei 94.5 0.031 6.8E-07 44.1 2.6 40 204-243 48-87 (185)
232 TIGR02702 SufR_cyano iron-sulf 94.4 0.04 8.7E-07 46.2 3.4 62 10-75 5-71 (203)
233 TIGR02337 HpaR homoprotocatech 94.4 0.038 8.3E-07 41.9 2.9 65 8-76 30-97 (118)
234 COG4262 Predicted spermidine s 94.3 0.079 1.7E-06 47.7 5.1 80 159-243 288-408 (508)
235 COG2345 Predicted transcriptio 94.3 0.052 1.1E-06 45.6 3.7 59 11-73 16-79 (218)
236 PRK11920 rirA iron-responsive 94.2 0.042 9.2E-07 43.8 2.9 48 18-71 23-70 (153)
237 PRK11050 manganese transport r 94.1 0.058 1.3E-06 43.0 3.5 55 13-75 44-99 (152)
238 COG1321 TroR Mn-dependent tran 94.0 0.07 1.5E-06 42.6 3.9 51 17-75 22-72 (154)
239 KOG3191 Predicted N6-DNA-methy 93.9 0.058 1.3E-06 43.8 3.1 83 161-243 44-169 (209)
240 PF06859 Bin3: Bicoid-interact 93.8 0.016 3.5E-07 43.0 -0.1 86 205-299 3-94 (110)
241 PF08220 HTH_DeoR: DeoR-like h 93.7 0.056 1.2E-06 35.3 2.3 42 11-56 5-47 (57)
242 cd00090 HTH_ARSR Arsenical Res 93.7 0.068 1.5E-06 36.3 2.9 58 7-69 8-65 (78)
243 COG0220 Predicted S-adenosylme 93.6 0.094 2E-06 44.7 4.1 80 162-242 50-164 (227)
244 TIGR00095 RNA methyltransferas 93.6 0.071 1.5E-06 44.2 3.2 80 161-244 50-160 (189)
245 COG0293 FtsJ 23S rRNA methylas 93.5 0.18 3.9E-06 42.1 5.5 94 149-246 34-163 (205)
246 PRK11014 transcriptional repre 93.5 0.069 1.5E-06 41.9 2.9 46 18-69 24-69 (141)
247 PF12802 MarR_2: MarR family; 93.3 0.022 4.7E-07 37.7 -0.2 45 9-57 8-55 (62)
248 PF04816 DUF633: Family of unk 93.3 0.29 6.3E-06 41.0 6.5 100 164-299 1-126 (205)
249 COG2521 Predicted archaeal met 93.3 0.26 5.6E-06 41.8 6.0 112 158-297 132-277 (287)
250 COG3897 Predicted methyltransf 93.2 0.28 6E-06 40.5 5.9 86 158-246 77-183 (218)
251 PF10007 DUF2250: Uncharacteri 93.1 0.074 1.6E-06 38.3 2.4 46 7-56 8-54 (92)
252 TIGR02944 suf_reg_Xantho FeS a 93.1 0.11 2.4E-06 40.1 3.5 46 18-69 24-69 (130)
253 PF01047 MarR: MarR family; I 93.1 0.024 5.3E-07 37.1 -0.2 45 9-57 6-51 (59)
254 smart00529 HTH_DTXR Helix-turn 93.0 0.17 3.6E-06 36.7 4.2 46 22-75 2-47 (96)
255 COG4190 Predicted transcriptio 92.9 0.075 1.6E-06 40.5 2.2 45 8-56 66-111 (144)
256 smart00420 HTH_DEOR helix_turn 92.9 0.077 1.7E-06 33.5 2.0 42 11-56 5-47 (53)
257 COG4301 Uncharacterized conser 92.7 0.2 4.4E-06 42.7 4.7 87 159-245 77-197 (321)
258 PHA02943 hypothetical protein; 92.6 0.12 2.6E-06 40.5 3.0 55 10-69 15-69 (165)
259 PRK11512 DNA-binding transcrip 92.6 0.1 2.2E-06 41.1 2.7 62 9-75 43-108 (144)
260 KOG1709 Guanidinoacetate methy 92.5 0.2 4.4E-06 41.9 4.3 86 158-245 99-209 (271)
261 TIGR02085 meth_trns_rumB 23S r 92.4 0.088 1.9E-06 48.5 2.4 76 161-241 234-333 (374)
262 TIGR01884 cas_HTH CRISPR locus 92.3 0.11 2.4E-06 43.5 2.7 58 8-71 145-203 (203)
263 PRK11933 yebU rRNA (cytosine-C 92.1 0.56 1.2E-05 44.5 7.4 89 158-246 111-246 (470)
264 KOG0820 Ribosomal RNA adenine 92.0 0.25 5.3E-06 42.9 4.4 61 148-209 47-129 (315)
265 PF06163 DUF977: Bacterial pro 91.6 0.066 1.4E-06 40.6 0.5 49 4-56 10-59 (127)
266 COG1733 Predicted transcriptio 91.5 0.26 5.7E-06 37.5 3.8 61 11-75 28-91 (120)
267 PF07789 DUF1627: Protein of u 91.5 0.34 7.5E-06 37.7 4.3 45 17-68 4-50 (155)
268 cd07377 WHTH_GntR Winged helix 91.4 0.38 8.3E-06 31.7 4.2 40 20-67 26-65 (66)
269 COG0500 SmtA SAM-dependent met 91.4 0.63 1.4E-05 35.6 6.1 81 164-247 52-160 (257)
270 TIGR01889 Staph_reg_Sar staphy 91.4 0.19 4.2E-06 37.5 2.9 53 18-75 42-97 (109)
271 TIGR01610 phage_O_Nterm phage 91.4 0.36 7.8E-06 35.1 4.2 44 18-68 46-89 (95)
272 smart00344 HTH_ASNC helix_turn 91.3 0.11 2.4E-06 38.6 1.5 46 7-56 4-50 (108)
273 PRK01544 bifunctional N5-gluta 91.2 0.26 5.7E-06 47.3 4.3 82 160-242 347-462 (506)
274 COG0030 KsgA Dimethyladenosine 91.2 0.44 9.5E-06 41.3 5.3 78 148-226 19-117 (259)
275 smart00345 HTH_GNTR helix_turn 91.1 0.44 9.5E-06 30.7 4.1 34 19-56 19-53 (60)
276 PF00325 Crp: Bacterial regula 91.1 0.26 5.6E-06 28.0 2.5 31 19-53 2-32 (32)
277 COG1497 Predicted transcriptio 91.0 0.23 4.9E-06 42.1 3.2 94 7-110 11-109 (260)
278 PRK06266 transcription initiat 91.0 0.17 3.7E-06 41.4 2.4 43 10-56 26-69 (178)
279 PF07381 DUF1495: Winged helix 90.8 0.17 3.7E-06 36.3 2.0 64 7-75 10-87 (90)
280 KOG3420 Predicted RNA methylas 90.4 0.13 2.9E-06 40.2 1.2 61 153-214 42-125 (185)
281 PF07942 N2227: N2227-like pro 90.4 1.1 2.4E-05 39.2 7.0 94 187-297 143-242 (270)
282 KOG1269 SAM-dependent methyltr 90.2 0.25 5.4E-06 45.2 2.9 87 160-248 110-221 (364)
283 PF02527 GidB: rRNA small subu 90.0 0.16 3.4E-06 41.9 1.4 75 163-243 51-149 (184)
284 TIGR00373 conserved hypothetic 89.9 0.28 6E-06 39.4 2.7 44 9-56 17-61 (158)
285 PF08461 HTH_12: Ribonuclease 89.9 0.28 6.1E-06 33.1 2.3 58 11-72 3-63 (66)
286 PRK15431 ferrous iron transpor 89.9 0.27 5.8E-06 34.1 2.2 40 13-56 9-49 (78)
287 PRK05638 threonine synthase; V 89.7 0.3 6.5E-06 46.0 3.3 65 7-75 372-438 (442)
288 PF00398 RrnaAD: Ribosomal RNA 89.3 0.38 8.3E-06 41.9 3.4 81 149-234 20-123 (262)
289 cd07153 Fur_like Ferric uptake 89.2 0.39 8.5E-06 36.1 3.0 61 8-68 3-66 (116)
290 PF04967 HTH_10: HTH DNA bindi 89.1 0.42 9.1E-06 30.7 2.5 38 3-46 9-46 (53)
291 PF01325 Fe_dep_repress: Iron 89.0 0.55 1.2E-05 31.0 3.2 36 17-56 20-55 (60)
292 PF11899 DUF3419: Protein of u 88.9 0.54 1.2E-05 43.3 4.2 60 187-246 274-338 (380)
293 PF13545 HTH_Crp_2: Crp-like h 88.9 0.68 1.5E-05 31.7 3.8 43 19-70 28-70 (76)
294 PF14394 DUF4423: Domain of un 88.8 0.78 1.7E-05 37.3 4.6 46 18-71 38-85 (171)
295 PF08279 HTH_11: HTH domain; 88.5 0.49 1.1E-05 30.3 2.7 38 11-52 5-44 (55)
296 PRK14165 winged helix-turn-hel 88.5 0.64 1.4E-05 39.3 4.0 57 14-75 15-72 (217)
297 KOG3115 Methyltransferase-like 88.3 0.56 1.2E-05 38.9 3.4 59 188-246 117-187 (249)
298 PRK03573 transcriptional regul 88.2 0.95 2.1E-05 35.4 4.7 62 11-76 36-101 (144)
299 PRK10870 transcriptional repre 88.1 0.98 2.1E-05 36.9 4.8 62 10-76 59-126 (176)
300 PRK04172 pheS phenylalanyl-tRN 87.8 0.46 9.9E-06 45.5 3.1 68 5-78 5-73 (489)
301 PRK11169 leucine-responsive tr 87.4 0.44 9.6E-06 38.4 2.4 46 7-56 15-61 (164)
302 TIGR00498 lexA SOS regulatory 87.4 0.43 9.3E-06 39.7 2.3 53 5-66 5-64 (199)
303 PRK11760 putative 23S rRNA C24 87.3 1.8 3.9E-05 39.2 6.3 83 158-246 209-308 (357)
304 PLN02668 indole-3-acetate carb 87.0 3.4 7.4E-05 38.1 8.1 56 191-246 147-241 (386)
305 COG3432 Predicted transcriptio 86.9 0.27 5.9E-06 35.5 0.7 57 11-75 23-82 (95)
306 PF01728 FtsJ: FtsJ-like methy 86.8 0.46 1E-05 38.8 2.2 92 149-244 10-141 (181)
307 KOG2798 Putative trehalase [Ca 86.4 5.5 0.00012 35.5 8.6 93 188-297 238-337 (369)
308 COG1378 Predicted transcriptio 86.3 1.1 2.3E-05 38.8 4.3 58 11-74 21-79 (247)
309 PRK04214 rbn ribonuclease BN/u 86.3 1.1 2.3E-05 41.9 4.6 45 18-70 309-353 (412)
310 PRK11179 DNA-binding transcrip 86.1 0.41 9E-06 38.1 1.5 46 7-56 10-56 (153)
311 COG4189 Predicted transcriptio 86.0 0.38 8.3E-06 40.5 1.3 48 5-56 22-70 (308)
312 COG0357 GidB Predicted S-adeno 85.4 1.1 2.5E-05 37.7 3.9 76 161-242 68-168 (215)
313 KOG2904 Predicted methyltransf 85.3 1.1 2.3E-05 39.1 3.7 84 158-241 146-284 (328)
314 PRK00050 16S rRNA m(4)C1402 me 85.1 1 2.2E-05 40.0 3.6 51 148-199 8-79 (296)
315 PF04182 B-block_TFIIIC: B-blo 85.0 0.55 1.2E-05 32.5 1.5 48 5-56 1-51 (75)
316 PF07091 FmrO: Ribosomal RNA m 84.9 0.68 1.5E-05 39.8 2.3 85 160-246 105-212 (251)
317 PRK12423 LexA repressor; Provi 84.8 0.52 1.1E-05 39.4 1.6 50 4-56 4-59 (202)
318 PF05732 RepL: Firmicute plasm 84.5 1.4 3E-05 35.6 3.8 43 20-70 76-118 (165)
319 PF03444 HrcA_DNA-bdg: Winged 84.4 2.2 4.9E-05 29.6 4.3 48 18-71 22-69 (78)
320 COG1889 NOP1 Fibrillarin-like 84.1 19 0.0004 30.2 10.2 119 154-299 71-216 (231)
321 PF01269 Fibrillarin: Fibrilla 84.0 1.6 3.5E-05 36.9 4.1 81 158-242 71-178 (229)
322 PF05584 Sulfolobus_pRN: Sulfo 83.8 1.1 2.3E-05 30.6 2.5 42 11-56 10-51 (72)
323 COG1510 Predicted transcriptio 83.6 1.3 2.8E-05 35.6 3.2 39 15-57 37-75 (177)
324 PLN02853 Probable phenylalanyl 83.4 0.9 1.9E-05 43.0 2.6 69 5-79 2-72 (492)
325 PF09445 Methyltransf_15: RNA 83.3 0.38 8.3E-06 38.7 0.2 50 162-211 1-77 (163)
326 KOG3924 Putative protein methy 83.2 2.3 5E-05 38.9 5.0 94 151-248 184-314 (419)
327 PF02319 E2F_TDP: E2F/DP famil 82.9 0.7 1.5E-05 31.6 1.3 44 11-56 16-62 (71)
328 PF13730 HTH_36: Helix-turn-he 82.8 1.5 3.3E-05 27.9 2.9 29 21-53 27-55 (55)
329 PF07757 AdoMet_MTase: Predict 82.1 0.77 1.7E-05 34.1 1.3 15 159-173 57-71 (112)
330 PRK06474 hypothetical protein; 81.8 1.2 2.6E-05 36.5 2.5 62 6-71 11-79 (178)
331 COG1522 Lrp Transcriptional re 81.7 0.89 1.9E-05 35.9 1.7 47 6-56 8-55 (154)
332 PF02002 TFIIE_alpha: TFIIE al 81.1 0.47 1E-05 35.1 -0.1 42 11-56 18-60 (105)
333 PF12793 SgrR_N: Sugar transpo 80.0 2.1 4.5E-05 32.4 3.1 36 18-57 18-53 (115)
334 PF00392 GntR: Bacterial regul 79.6 2.9 6.3E-05 27.6 3.5 35 19-57 23-58 (64)
335 KOG2352 Predicted spermine/spe 79.3 5.5 0.00012 37.5 6.2 86 163-248 51-169 (482)
336 KOG0822 Protein kinase inhibit 79.1 10 0.00023 36.2 7.9 111 121-239 333-475 (649)
337 PRK13777 transcriptional regul 78.9 2 4.4E-05 35.3 3.0 63 9-76 48-114 (185)
338 TIGR02147 Fsuc_second hypothet 78.6 3.5 7.6E-05 36.1 4.5 45 18-70 136-182 (271)
339 PTZ00326 phenylalanyl-tRNA syn 78.6 1.8 3.8E-05 41.2 2.8 69 5-79 5-75 (494)
340 COG4565 CitB Response regulato 78.4 1.8 3.9E-05 36.3 2.5 36 17-56 171-206 (224)
341 PRK04338 N(2),N(2)-dimethylgua 78.3 2.3 4.9E-05 39.3 3.4 75 161-241 58-157 (382)
342 PF12324 HTH_15: Helix-turn-he 77.2 1.6 3.4E-05 30.3 1.5 39 11-56 29-68 (77)
343 KOG4589 Cell division protein 77.2 7.7 0.00017 32.0 5.7 20 153-172 62-81 (232)
344 PRK11886 bifunctional biotin-- 77.1 2.2 4.7E-05 38.4 2.9 55 8-70 6-62 (319)
345 PRK09775 putative DNA-binding 77.1 2.2 4.8E-05 40.2 3.0 54 10-70 4-57 (442)
346 TIGR02787 codY_Gpos GTP-sensin 76.8 3.4 7.3E-05 35.3 3.7 43 10-56 187-231 (251)
347 PF13518 HTH_28: Helix-turn-he 76.4 1.8 3.8E-05 27.1 1.6 37 11-52 5-41 (52)
348 PF08221 HTH_9: RNA polymerase 76.2 1 2.2E-05 29.9 0.4 42 11-56 18-60 (62)
349 COG1846 MarR Transcriptional r 76.1 1.8 3.9E-05 32.2 1.9 64 10-77 26-92 (126)
350 PF05331 DUF742: Protein of un 76.0 3.3 7.1E-05 31.2 3.1 36 17-56 53-88 (114)
351 PRK13509 transcriptional repre 76.0 2.2 4.7E-05 37.0 2.5 44 10-57 9-53 (251)
352 PF02295 z-alpha: Adenosine de 75.6 0.32 7E-06 32.8 -2.1 59 7-69 5-64 (66)
353 PRK10736 hypothetical protein; 75.2 4.3 9.4E-05 37.3 4.3 51 9-67 311-361 (374)
354 COG1189 Predicted rRNA methyla 74.9 25 0.00055 30.1 8.4 134 151-299 70-226 (245)
355 PRK11753 DNA-binding transcrip 74.3 4.7 0.0001 33.4 4.1 34 19-56 168-201 (211)
356 PF13404 HTH_AsnC-type: AsnC-t 74.1 1.1 2.4E-05 27.2 0.2 32 7-42 4-36 (42)
357 PF13578 Methyltransf_24: Meth 74.0 1.5 3.3E-05 32.1 0.9 53 187-242 48-105 (106)
358 PF09904 HTH_43: Winged helix- 74.0 1.7 3.7E-05 31.0 1.1 50 16-69 18-70 (90)
359 PF09821 AAA_assoc_C: C-termin 73.7 4.2 9.1E-05 30.9 3.3 46 24-78 2-47 (120)
360 PF00165 HTH_AraC: Bacterial r 73.2 4.2 9.2E-05 24.3 2.6 32 14-50 4-35 (42)
361 PRK11161 fumarate/nitrate redu 73.2 5.1 0.00011 33.9 4.1 43 19-70 184-226 (235)
362 TIGR03697 NtcA_cyano global ni 73.2 5.4 0.00012 32.5 4.1 34 19-56 143-176 (193)
363 TIGR02698 CopY_TcrY copper tra 73.0 3.2 7E-05 32.0 2.6 49 5-57 3-56 (130)
364 PF02796 HTH_7: Helix-turn-hel 72.9 1.5 3.3E-05 26.9 0.6 29 11-44 14-42 (45)
365 PF09681 Phage_rep_org_N: N-te 72.4 7.4 0.00016 29.7 4.3 48 18-73 52-99 (121)
366 PF06969 HemN_C: HemN C-termin 72.2 5.6 0.00012 26.3 3.3 46 18-72 19-65 (66)
367 cd01842 SGNH_hydrolase_like_5 71.9 5.6 0.00012 32.4 3.7 41 205-246 52-102 (183)
368 COG1654 BirA Biotin operon rep 71.3 5.7 0.00012 27.8 3.2 59 8-73 8-66 (79)
369 TIGR03433 padR_acidobact trans 71.2 8.3 0.00018 28.1 4.3 67 10-76 8-82 (100)
370 PF13814 Replic_Relax: Replica 70.8 6.4 0.00014 32.2 4.1 62 14-76 3-71 (191)
371 PF11994 DUF3489: Protein of u 70.8 8.5 0.00019 26.3 3.8 40 11-54 15-57 (72)
372 PF09929 DUF2161: Uncharacteri 70.8 2.9 6.4E-05 31.4 1.8 51 11-72 64-115 (118)
373 PRK10906 DNA-binding transcrip 70.6 2.7 5.9E-05 36.4 1.8 45 9-57 8-53 (252)
374 PRK13918 CRP/FNR family transc 70.4 6.7 0.00015 32.2 4.1 42 19-69 149-190 (202)
375 PRK10411 DNA-binding transcrip 70.1 4.3 9.3E-05 34.9 2.9 44 9-56 7-51 (240)
376 PF00376 MerR: MerR family reg 70.0 7 0.00015 23.0 3.0 26 21-54 1-26 (38)
377 PF02475 Met_10: Met-10+ like- 69.2 1.6 3.5E-05 36.4 0.1 75 158-238 99-198 (200)
378 COG2512 Predicted membrane-ass 69.1 2.7 5.9E-05 36.5 1.5 46 8-57 197-244 (258)
379 PF01170 UPF0020: Putative RNA 69.1 10 0.00022 30.9 4.8 90 150-240 19-149 (179)
380 PF11312 DUF3115: Protein of u 69.0 6.3 0.00014 35.1 3.7 56 189-244 176-244 (315)
381 PRK09802 DNA-binding transcrip 68.2 3.7 8E-05 36.0 2.1 44 9-56 20-64 (269)
382 PF02981 FokI_N: Restriction e 68.1 4.5 9.8E-05 31.4 2.3 35 39-76 108-142 (145)
383 TIGR02143 trmA_only tRNA (urac 67.3 3.2 6.9E-05 37.9 1.6 38 162-199 199-256 (353)
384 PRK10046 dpiA two-component re 67.2 4.5 9.8E-05 34.0 2.5 42 11-56 167-210 (225)
385 COG1675 TFA1 Transcription ini 67.2 4.6 0.0001 32.9 2.3 42 11-56 23-65 (176)
386 PF04072 LCM: Leucine carboxyl 67.1 4.3 9.3E-05 33.2 2.2 69 160-228 78-182 (183)
387 PRK10434 srlR DNA-bindng trans 66.9 3.2 6.9E-05 36.1 1.5 45 9-57 8-53 (256)
388 KOG1663 O-methyltransferase [S 66.7 16 0.00034 31.2 5.4 83 160-247 73-188 (237)
389 TIGR00635 ruvB Holliday juncti 66.6 4.4 9.5E-05 35.9 2.4 37 16-56 252-289 (305)
390 PRK11639 zinc uptake transcrip 66.4 4.8 0.0001 32.6 2.3 54 4-57 24-80 (169)
391 PRK09391 fixK transcriptional 66.3 9.1 0.0002 32.5 4.2 43 19-69 179-221 (230)
392 PRK01381 Trp operon repressor; 65.7 3 6.5E-05 30.4 0.9 27 6-32 42-68 (99)
393 TIGR01321 TrpR trp operon repr 65.4 2.7 6E-05 30.4 0.7 27 6-32 42-68 (94)
394 PF01475 FUR: Ferric uptake re 65.4 2 4.4E-05 32.4 -0.0 65 5-69 7-74 (120)
395 PRK09462 fur ferric uptake reg 65.4 6.8 0.00015 30.8 3.0 65 4-68 15-83 (148)
396 KOG2915 tRNA(1-methyladenosine 65.2 15 0.00033 32.1 5.2 104 135-246 77-214 (314)
397 smart00531 TFIIE Transcription 64.9 5.5 0.00012 31.4 2.4 41 9-53 4-45 (147)
398 PRK05031 tRNA (uracil-5-)-meth 64.9 4 8.7E-05 37.4 1.8 38 162-199 208-265 (362)
399 PRK00215 LexA repressor; Valid 64.7 8.7 0.00019 32.0 3.7 36 18-56 22-57 (205)
400 PRK10402 DNA-binding transcrip 64.7 8.9 0.00019 32.4 3.8 41 19-68 169-209 (226)
401 COG1725 Predicted transcriptio 64.6 10 0.00023 29.0 3.7 33 21-57 37-69 (125)
402 TIGR03879 near_KaiC_dom probab 63.9 5.2 0.00011 27.5 1.8 34 18-55 31-64 (73)
403 PRK09954 putative kinase; Prov 63.9 4.7 0.0001 36.8 2.1 43 8-54 5-48 (362)
404 PF08222 HTH_CodY: CodY helix- 63.7 4.7 0.0001 26.1 1.4 35 18-56 3-37 (61)
405 PHA02701 ORF020 dsRNA-binding 63.5 6.7 0.00015 32.0 2.6 45 8-56 6-52 (183)
406 PF08820 DUF1803: Domain of un 63.4 9.9 0.00022 27.4 3.2 42 18-69 27-68 (93)
407 PF04492 Phage_rep_O: Bacterio 63.1 12 0.00026 27.4 3.7 34 19-56 54-87 (100)
408 PF03602 Cons_hypoth95: Conser 62.1 2.9 6.3E-05 34.4 0.3 83 160-246 42-156 (183)
409 PRK00080 ruvB Holliday junctio 61.5 6.3 0.00014 35.5 2.4 48 15-71 272-320 (328)
410 PF02384 N6_Mtase: N-6 DNA Met 61.5 9.3 0.0002 34.0 3.5 85 158-243 44-184 (311)
411 KOG1562 Spermidine synthase [A 61.3 21 0.00046 31.6 5.4 87 158-245 119-239 (337)
412 COG1349 GlpR Transcriptional r 60.9 5.6 0.00012 34.5 1.9 43 10-56 9-52 (253)
413 PF13384 HTH_23: Homeodomain-l 60.6 2.9 6.2E-05 26.0 0.0 40 7-51 6-45 (50)
414 COG0758 Smf Predicted Rossmann 59.9 13 0.00028 33.9 4.0 42 11-56 301-342 (350)
415 KOG4058 Uncharacterized conser 59.6 19 0.00042 28.5 4.4 80 160-247 72-177 (199)
416 PRK11534 DNA-binding transcrip 59.3 19 0.0004 30.3 4.8 46 18-71 29-74 (224)
417 PF14557 AphA_like: Putative A 59.2 8 0.00017 31.0 2.3 70 2-72 7-83 (175)
418 PF14338 Mrr_N: Mrr N-terminal 58.9 8.2 0.00018 27.6 2.2 34 40-77 57-90 (92)
419 PF04989 CmcI: Cephalosporin h 58.8 15 0.00033 30.7 4.0 58 187-246 84-151 (206)
420 PF07848 PaaX: PaaX-like prote 58.5 10 0.00022 25.8 2.4 48 18-70 19-69 (70)
421 TIGR01714 phage_rep_org_N phag 58.1 21 0.00045 27.1 4.3 46 18-71 50-95 (119)
422 PRK09334 30S ribosomal protein 58.0 11 0.00025 26.7 2.7 35 18-56 40-74 (86)
423 PF05491 RuvB_C: Holliday junc 57.5 13 0.00027 25.8 2.8 47 16-71 22-69 (76)
424 PRK11642 exoribonuclease R; Pr 57.2 9.7 0.00021 38.9 3.1 55 10-68 23-79 (813)
425 COG3398 Uncharacterized protei 57.1 12 0.00025 31.6 3.0 58 10-72 178-236 (240)
426 COG5631 Predicted transcriptio 57.0 17 0.00037 29.0 3.7 54 17-74 96-149 (199)
427 TIGR03338 phnR_burk phosphonat 56.9 18 0.0004 30.0 4.3 46 18-71 33-78 (212)
428 COG2520 Predicted methyltransf 56.0 20 0.00044 32.5 4.6 84 159-248 187-295 (341)
429 KOG2165 Anaphase-promoting com 55.5 14 0.0003 36.4 3.7 48 18-69 615-662 (765)
430 COG1802 GntR Transcriptional r 55.1 21 0.00046 30.1 4.5 47 18-72 38-84 (230)
431 COG2524 Predicted transcriptio 54.4 19 0.00041 31.2 3.9 49 18-72 24-72 (294)
432 PHA03103 double-strand RNA-bin 54.3 16 0.00035 29.9 3.4 42 11-56 18-60 (183)
433 PF03428 RP-C: Replication pro 54.0 15 0.00033 30.0 3.2 33 20-56 71-104 (177)
434 PRK04424 fatty acid biosynthes 53.6 4.9 0.00011 33.1 0.3 43 10-56 11-54 (185)
435 PRK13239 alkylmercury lyase; P 53.4 8.8 0.00019 32.1 1.8 43 7-56 23-66 (206)
436 PF11972 HTH_13: HTH DNA bindi 52.9 12 0.00026 24.0 1.9 46 11-67 4-50 (54)
437 COG3682 Predicted transcriptio 52.8 8.8 0.00019 29.3 1.5 62 6-70 6-68 (123)
438 KOG2730 Methylase [General fun 52.7 5.8 0.00013 33.5 0.6 28 173-200 120-155 (263)
439 COG0735 Fur Fe2+/Zn2+ uptake r 51.9 11 0.00024 29.7 2.0 53 5-57 20-75 (145)
440 PF03297 Ribosomal_S25: S25 ri 51.8 17 0.00037 26.9 2.9 35 18-56 58-92 (105)
441 COG2186 FadR Transcriptional r 51.3 25 0.00054 30.2 4.3 41 21-68 36-76 (241)
442 PRK11783 rlmL 23S rRNA m(2)G24 51.3 39 0.00084 34.0 6.3 56 188-243 283-348 (702)
443 PRK11414 colanic acid/biofilm 50.8 30 0.00065 29.0 4.7 36 18-57 33-68 (221)
444 PF04218 CENP-B_N: CENP-B N-te 50.6 7.5 0.00016 24.8 0.8 33 8-45 12-44 (53)
445 PF08784 RPA_C: Replication pr 50.3 15 0.00032 26.8 2.4 45 8-56 49-98 (102)
446 PF03551 PadR: Transcriptional 50.1 4.2 9.2E-05 27.8 -0.5 59 15-73 5-71 (75)
447 PF09202 Rio2_N: Rio2, N-termi 49.7 24 0.00053 24.8 3.3 48 19-72 24-71 (82)
448 PRK00135 scpB segregation and 49.3 32 0.00069 28.4 4.5 39 11-56 95-134 (188)
449 PRK06719 precorrin-2 dehydroge 49.2 43 0.00093 26.6 5.1 65 161-231 13-93 (157)
450 COG1092 Predicted SAM-dependen 49.2 19 0.00041 33.4 3.4 84 161-246 218-340 (393)
451 PF08672 APC2: Anaphase promot 49.0 18 0.0004 23.7 2.4 27 36-67 34-60 (60)
452 PF03141 Methyltransf_29: Puta 48.6 20 0.00043 34.1 3.5 87 158-244 363-469 (506)
453 PF13744 HTH_37: Helix-turn-he 48.5 8.6 0.00019 26.8 0.8 40 13-52 25-73 (80)
454 smart00342 HTH_ARAC helix_turn 48.3 22 0.00048 23.9 3.0 29 19-51 1-29 (84)
455 COG2384 Predicted SAM-dependen 48.0 42 0.0009 28.5 4.9 52 160-211 16-93 (226)
456 PRK00082 hrcA heat-inducible t 47.7 20 0.00043 32.6 3.3 51 14-71 19-72 (339)
457 COG4901 Ribosomal protein S25 47.7 23 0.00049 25.9 2.9 35 18-56 58-92 (107)
458 PF13551 HTH_29: Winged helix- 47.5 13 0.00028 27.2 1.8 37 12-52 5-41 (112)
459 PF07574 SMC_Nse1: Nse1 non-SM 47.3 13 0.00028 30.9 1.9 40 24-71 157-196 (200)
460 PF03965 Penicillinase_R: Peni 47.2 6.4 0.00014 29.5 0.0 51 7-57 4-55 (115)
461 COG5340 Predicted transcriptio 47.2 12 0.00026 31.6 1.6 46 18-71 29-74 (269)
462 PF04760 IF2_N: Translation in 46.8 9.1 0.0002 24.3 0.7 31 19-56 3-34 (54)
463 PF13542 HTH_Tnp_ISL3: Helix-t 46.4 16 0.00035 22.7 1.8 34 9-47 18-51 (52)
464 PF09114 MotA_activ: Transcrip 46.3 37 0.00079 24.2 3.7 49 18-75 29-79 (96)
465 COG2390 DeoR Transcriptional r 46.0 23 0.0005 31.9 3.4 35 18-56 25-59 (321)
466 PRK09333 30S ribosomal protein 44.7 44 0.00096 26.4 4.4 55 17-76 65-129 (150)
467 PF05402 PqqD: Coenzyme PQQ sy 44.7 20 0.00044 23.7 2.3 39 11-54 22-68 (68)
468 PF13679 Methyltransf_32: Meth 44.6 14 0.00029 28.8 1.5 15 158-172 23-37 (141)
469 PF10017 Methyltransf_33: Hist 44.4 28 0.00061 26.6 3.2 28 272-299 92-119 (127)
470 COG1386 scpB Chromosome segreg 44.0 43 0.00094 27.5 4.4 47 17-70 104-153 (184)
471 PF09106 SelB-wing_2: Elongati 43.9 37 0.00079 22.0 3.3 34 19-56 17-53 (59)
472 PRK09464 pdhR transcriptional 43.8 45 0.00097 28.6 4.8 43 19-68 33-76 (254)
473 TIGR00006 S-adenosyl-methyltra 43.6 28 0.00061 31.1 3.5 30 219-248 217-246 (305)
474 COG0275 Predicted S-adenosylme 43.2 24 0.00053 31.4 3.0 29 220-248 222-250 (314)
475 PHA02591 hypothetical protein; 43.2 13 0.00029 25.7 1.1 30 12-45 52-81 (83)
476 TIGR03859 PQQ_PqqD coenzyme PQ 43.1 22 0.00047 24.9 2.2 42 11-54 36-81 (81)
477 PRK09990 DNA-binding transcrip 43.1 42 0.0009 28.7 4.5 36 18-57 29-65 (251)
478 COG0640 ArsR Predicted transcr 42.8 18 0.00038 25.4 1.9 47 7-57 26-73 (110)
479 PF05344 DUF746: Domain of Unk 42.7 21 0.00045 23.9 1.9 28 17-48 11-38 (65)
480 COG1255 Uncharacterized protei 42.6 88 0.0019 23.7 5.4 66 160-234 13-96 (129)
481 PRK11511 DNA-binding transcrip 42.1 30 0.00065 26.3 3.1 49 18-76 24-72 (127)
482 PRK08208 coproporphyrinogen II 41.8 41 0.00089 31.6 4.5 50 18-76 360-409 (430)
483 PF06557 DUF1122: Protein of u 41.4 41 0.00089 27.0 3.7 60 222-299 66-125 (170)
484 COG4519 Uncharacterized protei 41.2 38 0.00082 23.6 3.0 34 19-56 22-55 (95)
485 PRK05660 HemN family oxidoredu 41.2 41 0.00089 31.0 4.4 50 18-76 320-369 (378)
486 TIGR02404 trehalos_R_Bsub treh 41.2 40 0.00087 28.5 4.1 41 21-68 26-66 (233)
487 PRK10225 DNA-binding transcrip 41.1 46 0.001 28.6 4.5 36 18-57 31-67 (257)
488 PRK09416 lstR lineage-specific 40.8 36 0.00078 26.4 3.2 71 4-75 41-115 (135)
489 TIGR00331 hrcA heat shock gene 40.7 27 0.00059 31.7 3.1 40 14-57 15-57 (337)
490 cd04781 HTH_MerR-like_sg6 Heli 40.5 43 0.00092 25.2 3.7 29 20-56 1-29 (120)
491 PF04545 Sigma70_r4: Sigma-70, 40.3 41 0.00088 20.7 3.0 26 17-46 18-43 (50)
492 PF07109 Mg-por_mtran_C: Magne 40.2 1.4E+02 0.003 21.8 6.0 75 212-300 4-85 (97)
493 COG3398 Uncharacterized protei 40.2 26 0.00057 29.6 2.6 47 7-57 102-149 (240)
494 COG1339 Transcriptional regula 40.1 48 0.001 27.5 4.0 51 19-74 19-69 (214)
495 PF13936 HTH_38: Helix-turn-he 40.0 16 0.00034 22.2 1.0 27 15-45 16-42 (44)
496 PRK14999 histidine utilization 39.9 44 0.00095 28.5 4.1 41 21-68 38-78 (241)
497 cd04766 HTH_HspR Helix-Turn-He 39.9 43 0.00092 23.8 3.4 28 20-55 2-29 (91)
498 PRK00050 16S rRNA m(4)C1402 me 39.8 35 0.00077 30.3 3.5 30 219-248 213-242 (296)
499 cd01282 HTH_MerR-like_sg3 Heli 39.6 43 0.00093 24.9 3.5 29 20-56 1-29 (112)
500 PRK10219 DNA-binding transcrip 39.5 36 0.00079 24.8 3.1 35 18-56 20-54 (107)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=3.6e-42 Score=299.59 Aligned_cols=295 Identities=37% Similarity=0.595 Sum_probs=252.6
Q ss_pred CCCccccccccccccCCCCCCHHHHHHHhCC-CCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCCC
Q 043063 1 MEDNECRDGGKKGRLANTPLSASQILTRILP-SGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAE 79 (301)
Q Consensus 1 ~~~~~a~~lglf~~L~~g~~t~~ela~~~~~-~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~~ 79 (301)
|-+.||+|||+||.|..++. ..|+|..+-. ..|..|..++|+||.|++.+++....-+ .. .|++++.++++.+...
T Consensus 21 ~~lk~A~eL~v~d~l~~~~~-p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~-~~-~Y~~~~~~~~~l~~~~ 97 (342)
T KOG3178|consen 21 MVLKAACELGVFDILANAGS-PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVG-GE-VYSATPVCKYFLKDSG 97 (342)
T ss_pred HHHHHHHHcChHHHHHhCCC-HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeec-ce-eeeccchhhhheecCC
Confidence 34689999999999997443 6777777663 2344688999999999999999987321 12 7999999998776655
Q ss_pred CCChhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCC
Q 043063 80 GQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFK 159 (301)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~ 159 (301)
..++++++...+++..++.|..+.++++.|. .+|..++|...|+|...+......|+++|...+....+.+++.+..|+
T Consensus 98 ~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~ 176 (342)
T KOG3178|consen 98 GGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFK 176 (342)
T ss_pred CCchhHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 5689999998888889999999999999998 789999997789998888888899999999998888888888887788
Q ss_pred CcceEEeecCCce---------------eeeehhHHHhhCCCC-CceeEEeCCCCccCCcccEeeHhhhhccCChHHHHH
Q 043063 160 GVKRLVDVGGSAG---------------INFDLPEVVAEAPSI-PGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKL 223 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~~-~ri~~~~gd~~~~~p~~D~v~~~~vlh~~~d~~~~~ 223 (301)
+....||||||.| +.||+|.+++.++.. +.|+.+.||+|.+.|.+|+||+.+|||||+|++|++
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvk 256 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVK 256 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccCChHHHHH
Confidence 8999999999994 789999999999887 889999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCEEEEeccccCCCCCChH-HhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEccC
Q 043063 224 IMENCYKAIPAGGKLIACEPVLPDDSNESQ-RTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVLD 300 (301)
Q Consensus 224 iL~~~~~aL~pgg~lli~e~~~~~~~~~~~-~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~~ 300 (301)
+|++|+++|+|||+|+|.|.+.++....+. .......+|+.|+. .+.+|++|+.+||..++.++||.+.++.-.++
T Consensus 257 iLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~-~~~~Gkert~~e~q~l~~~~gF~~~~~~~~~~ 333 (342)
T KOG3178|consen 257 ILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLT-QTSGGKERTLKEFQALLPEEGFPVCMVALTAY 333 (342)
T ss_pred HHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHH-HhccceeccHHHHHhcchhhcCceeEEEeccC
Confidence 999999999999999999998885221111 23356678999987 56679999999999999999999999876654
No 2
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=1.1e-41 Score=294.29 Aligned_cols=222 Identities=33% Similarity=0.560 Sum_probs=189.2
Q ss_pred CCCeEecChhchhhhcCCCCCChhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHH
Q 043063 61 GERKYSLTEIGKSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAM 140 (301)
Q Consensus 61 ~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 140 (301)
++++|+||++|+.|+.+.+..++..++.+...+.++++|.+|.+++++|. ++|+..+|.++|+|+.++++..+.|+.+|
T Consensus 2 ~~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m 80 (241)
T PF00891_consen 2 EGDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAM 80 (241)
T ss_dssp STEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHH
T ss_pred CCCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHH
Confidence 47899999999988887764568888877667789999999999999999 89999999889999999999999999999
Q ss_pred hcCCccch-HHhhhcCCCCCCcceEEeecCCce---------------eeeehhHHHhhCCCCCceeEEeCCCCccCCcc
Q 043063 141 SGVSVPFM-TSILDGYDGFKGVKRLVDVGGSAG---------------INFDLPEVVAEAPSIPGVTHIGGDMFKSIPAA 204 (301)
Q Consensus 141 ~~~~~~~~-~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~~p~~ 204 (301)
...+.... ..+...++ |++..+|||||||+| +++|+|+|++.+++.+||++++||||+++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~ 159 (241)
T PF00891_consen 81 AEYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVA 159 (241)
T ss_dssp HHHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSE
T ss_pred Hhhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhccc
Confidence 98887766 77888897 999999999999994 79999999999888999999999999779999
Q ss_pred cEeeHhhhhccCChHHHHHHHHHHHHhCCCC--CEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHH
Q 043063 205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAG--GKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFK 282 (301)
Q Consensus 205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pg--g~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~ 282 (301)
|+|++++|||+|+|++|.+||++++++|+|| |+|+|+|.+.++.....+.......+|++|++ +.+|++||.+||+
T Consensus 160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~--~~~G~~rt~~e~~ 237 (241)
T PF00891_consen 160 DVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLV--LTGGKERTEEEWE 237 (241)
T ss_dssp SEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHH--HHSSS-EEHHHHH
T ss_pred cceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHH--hcCCCCcCHHHHH
Confidence 9999999999999999999999999999999 99999999999875432222233578999997 6679999999999
Q ss_pred HHHH
Q 043063 283 QLGF 286 (301)
Q Consensus 283 ~~l~ 286 (301)
+||.
T Consensus 238 ~ll~ 241 (241)
T PF00891_consen 238 ALLK 241 (241)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9984
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=8e-39 Score=285.76 Aligned_cols=272 Identities=17% Similarity=0.216 Sum_probs=197.8
Q ss_pred CccccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCCCCC-
Q 043063 3 DNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEGQ- 81 (301)
Q Consensus 3 ~~~a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~~~~- 81 (301)
+++|++||||+.|.+||+|++|||+++|+ +++.+++||++|+++|+|++. +++|+||+.++.+..+.++.
T Consensus 7 l~aa~~Lglfd~L~~gp~t~~eLA~~~~~----~~~~~~~lL~~L~~lgll~~~-----~~~y~~t~~~~~~l~~~~~~~ 77 (306)
T TIGR02716 7 MKAAIELDLFSHMAEGPKDLATLAADTGS----VPPRLEMLLETLRQMRVINLE-----DGKWSLTEFADYMFSPTPKEP 77 (306)
T ss_pred HHHHHHcCcHHHHhcCCCCHHHHHHHcCC----ChHHHHHHHHHHHhCCCeEec-----CCcEecchhHHhhccCCccch
Confidence 57999999999999899999999999999 999999999999999999987 68999999998665554321
Q ss_pred --ChhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCC
Q 043063 82 --SYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFK 159 (301)
Q Consensus 82 --~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~ 159 (301)
++.+++.+.. ......|.+|.+++|+ . ++|... +.+....++....+...+........+.+++..+ ++
T Consensus 78 ~~~~~~~~~~~~-~~~~~~~~~l~~~~r~-~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 148 (306)
T TIGR02716 78 NLHQTPVAKAMA-FLADDFYMGLSQAVRG-Q-KNFKGQ-----VPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LD 148 (306)
T ss_pred hhhcCchHHHHH-HHHHHHHHhHHHHhcC-C-cccccc-----cCCCCCCHHHHHhHHHHHHhcchhHHHHHHHHcC-CC
Confidence 1223333321 1233578899999984 3 344322 2222222233333333333433444566777775 88
Q ss_pred CcceEEeecCCce---------------eeeehhHHHhhCCC-------CCceeEEeCCCCcc-CCcccEeeHhhhhccC
Q 043063 160 GVKRLVDVGGSAG---------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKS-IPAADAIFMKWVLTTW 216 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~-~p~~D~v~~~~vlh~~ 216 (301)
+..+|||||||+| +++|+|.+++.+++ .+||+++++|++++ +|.+|+|++++++|+|
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh~~ 228 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSA 228 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhhcC
Confidence 8899999999995 68899999887653 37999999999975 7778999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhh-hccHHHHhhhhccccccCHHHHHHHHHhCCCCceEE
Q 043063 217 TDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALL-EGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRL 295 (301)
Q Consensus 217 ~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~-~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~ 295 (301)
+++++.++|++++++|+|||+++|.|.+.++... .+...... ...+.|+. .. ..-++.+||.++|+++||+.+++
T Consensus 229 ~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~--~~-~~~~~~~e~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 229 NEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPEN-PNFDYLSHYILGAGMPF--SV-LGFKEQARYKEILESLGYKDVTM 304 (306)
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC-chhhHHHHHHHHccccc--cc-ccCCCHHHHHHHHHHcCCCeeEe
Confidence 9999999999999999999999999998876532 11111110 11111111 11 12345899999999999998876
Q ss_pred E
Q 043063 296 Y 296 (301)
Q Consensus 296 ~ 296 (301)
+
T Consensus 305 ~ 305 (306)
T TIGR02716 305 V 305 (306)
T ss_pred c
Confidence 5
No 4
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.56 E-value=4.8e-14 Score=123.15 Aligned_cols=141 Identities=20% Similarity=0.286 Sum_probs=104.0
Q ss_pred HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc-CCc--ccE
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPA--ADA 206 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~-~p~--~D~ 206 (301)
..+++.++ +.+..+|||||||+| +++|+ |.+++.+++ .++|+++.+|+.+. +|. .|+
T Consensus 42 ~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~ 120 (263)
T PTZ00098 42 TKILSDIE-LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDM 120 (263)
T ss_pred HHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEE
Confidence 45556664 778889999999995 46687 667666553 36899999998764 664 499
Q ss_pred eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHH
Q 043063 207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGF 286 (301)
Q Consensus 207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~ 286 (301)
|++..++|++++++..++|++++++|+|||++++.|........ +...... ... ...-...+.+++.++|+
T Consensus 121 V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~--~~~~~~~-----~~~--~~~~~~~~~~~~~~~l~ 191 (263)
T PTZ00098 121 IYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIEN--WDEEFKA-----YIK--KRKYTLIPIQEYGDLIK 191 (263)
T ss_pred EEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccC--cHHHHHH-----HHH--hcCCCCCCHHHHHHHHH
Confidence 99999998898767789999999999999999999987654311 1111100 110 11122358999999999
Q ss_pred hCCCCceEEEEcc
Q 043063 287 SAGFPHLRLYRVL 299 (301)
Q Consensus 287 ~aGf~~~~~~~~~ 299 (301)
++||+.++..+++
T Consensus 192 ~aGF~~v~~~d~~ 204 (263)
T PTZ00098 192 SCNFQNVVAKDIS 204 (263)
T ss_pred HCCCCeeeEEeCc
Confidence 9999999998865
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.53 E-value=3.2e-15 Score=127.82 Aligned_cols=139 Identities=19% Similarity=0.312 Sum_probs=68.0
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc--ccEeeHhh
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA--ADAIFMKW 211 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~--~D~v~~~~ 211 (301)
.....+|||||||+| +++|. +.+++.+++ ..+|+++.+|..+. +|+ .|+|++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 455679999999995 56797 889988764 35899999998764 765 49999999
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhh-hhcc--HHHHhhhhcc------------cccc
Q 043063 212 VLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRAL-LEGD--IFVMTIYRAK------------GKHM 276 (301)
Q Consensus 212 vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~-~~~d--~~m~~~~~~~------------g~~r 276 (301)
.||+++|. .+.|++++++|+|||+++|+|...++.+ ...... ..+. +..++-...+ -.-.
T Consensus 125 glrn~~d~--~~~l~E~~RVLkPGG~l~ile~~~p~~~---~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~ 199 (233)
T PF01209_consen 125 GLRNFPDR--ERALREMYRVLKPGGRLVILEFSKPRNP---LLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFP 199 (233)
T ss_dssp -GGG-SSH--HHHHHHHHHHEEEEEEEEEEEEEB-SSH---HHHHHHHH-------------------------------
T ss_pred hHHhhCCH--HHHHHHHHHHcCCCeEEEEeeccCCCCc---hhhceeeeeeccccccccccccccccccccccccccccc
Confidence 99999986 4799999999999999999999887652 111110 0011 0000000000 1124
Q ss_pred CHHHHHHHHHhCCCCceEEEEccCC
Q 043063 277 TEQEFKQLGFSAGFPHLRLYRVLDC 301 (301)
Q Consensus 277 t~~e~~~~l~~aGf~~~~~~~~~~~ 301 (301)
+.+++.++++++||+.++..++..|
T Consensus 200 ~~~~~~~~l~~~Gf~~v~~~~~~~G 224 (233)
T PF01209_consen 200 SPEELKELLEEAGFKNVEYRPLTFG 224 (233)
T ss_dssp -------------------------
T ss_pred ccccccccccccccccccccccccc
Confidence 7999999999999999999887764
No 6
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.53 E-value=3.4e-14 Score=122.53 Aligned_cols=132 Identities=18% Similarity=0.231 Sum_probs=96.9
Q ss_pred CCcceEEeecCCce-----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCcccEeeHhhh
Q 043063 159 KGVKRLVDVGGSAG-----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPAADAIFMKWV 212 (301)
Q Consensus 159 ~~~~~vlDvGgG~g-----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~~D~v~~~~v 212 (301)
.+..+|||||||+| +++|+ +.+++.+++ ..+++++.+|+.+. ++..|++++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 45679999999996 46788 888877754 24799999999764 566799999999
Q ss_pred hccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhh----------------hhcccccc
Q 043063 213 LTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI----------------YRAKGKHM 276 (301)
Q Consensus 213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~----------------~~~~g~~r 276 (301)
+|++++++...+|++++++|+|||++++.|.+.+++.. ..... ..+.+.-. ....-...
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~---~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 206 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTK---INHLL--IDLHHQFKRANGYSELEISQKRTALENVMRTD 206 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHh---HHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHhccCCCC
Confidence 99999888889999999999999999999988765422 11111 11110000 00012356
Q ss_pred CHHHHHHHHHhCCCCceEE
Q 043063 277 TEQEFKQLGFSAGFPHLRL 295 (301)
Q Consensus 277 t~~e~~~~l~~aGf~~~~~ 295 (301)
|.+++.++++++||+.+++
T Consensus 207 s~~~~~~~l~~aGF~~~~~ 225 (239)
T TIGR00740 207 SIETHKARLKNVGFSHVEL 225 (239)
T ss_pred CHHHHHHHHHHcCCchHHH
Confidence 9999999999999987653
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.52 E-value=2.1e-13 Score=118.99 Aligned_cols=141 Identities=20% Similarity=0.288 Sum_probs=98.6
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC---------CCceeEEeCCCCcc-CCc--ccEee
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS---------IPGVTHIGGDMFKS-IPA--ADAIF 208 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~---------~~ri~~~~gd~~~~-~p~--~D~v~ 208 (301)
..+..+|||||||+| +++|. +++++.|++ .++++++.+|+.+. ++. .|+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 445689999999996 45787 788877643 24799999998763 554 49999
Q ss_pred HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhcc------------cccc
Q 043063 209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK------------GKHM 276 (301)
Q Consensus 209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~------------g~~r 276 (301)
+..++|+++|. .++|++++++|+|||++++.|...++..-..+...+....-+...+ ...+ ..-+
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~y~~l~~s~~~f~ 227 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVA-TGYGLAKEYEYLKSSINEYL 227 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHH-HHhCChHHHHHHHHHHHhcC
Confidence 99999999876 5899999999999999999998776542100110000000000000 0000 2245
Q ss_pred CHHHHHHHHHhCCCCceEEEEccCC
Q 043063 277 TEQEFKQLGFSAGFPHLRLYRVLDC 301 (301)
Q Consensus 277 t~~e~~~~l~~aGf~~~~~~~~~~~ 301 (301)
+.+|+.++++++||+.++...+..|
T Consensus 228 s~~el~~ll~~aGF~~~~~~~~~~g 252 (261)
T PLN02233 228 TGEELEKLALEAGFSSAKHYEISGG 252 (261)
T ss_pred CHHHHHHHHHHCCCCEEEEEEcCCC
Confidence 9999999999999999998876643
No 8
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=1.7e-13 Score=116.25 Aligned_cols=138 Identities=22% Similarity=0.311 Sum_probs=102.4
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCCCC------CceeEEeCCCCcc-CCc--ccEeeHhhhh
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPA--ADAIFMKWVL 213 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~~------~ri~~~~gd~~~~-~p~--~D~v~~~~vl 213 (301)
..+.+||||||||| +++|. +.+++.+++. ..|+|+.+|+..- +|+ .|+|.+++.|
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 35789999999995 67898 8899888752 2399999999874 886 3999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHH----HHhhh------------hccccccC
Q 043063 214 TTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIF----VMTIY------------RAKGKHMT 277 (301)
Q Consensus 214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~----m~~~~------------~~~g~~rt 277 (301)
|+++|.+ +.|++++|+|+|||+++++|.-.+..+. .......+... .++.. ...-...+
T Consensus 130 rnv~d~~--~aL~E~~RVlKpgG~~~vle~~~p~~~~---~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~ 204 (238)
T COG2226 130 RNVTDID--KALKEMYRVLKPGGRLLVLEFSKPDNPV---LRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPD 204 (238)
T ss_pred hcCCCHH--HHHHHHHHhhcCCeEEEEEEcCCCCchh---hHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCC
Confidence 9999864 9999999999999999999998876532 11111111111 11100 01122358
Q ss_pred HHHHHHHHHhCCCCceEEEEccCC
Q 043063 278 EQEFKQLGFSAGFPHLRLYRVLDC 301 (301)
Q Consensus 278 ~~e~~~~l~~aGf~~~~~~~~~~~ 301 (301)
.+++.++++++||+.+...++.+|
T Consensus 205 ~~~l~~~~~~~gf~~i~~~~~~~G 228 (238)
T COG2226 205 QEELKQMIEKAGFEEVRYENLTFG 228 (238)
T ss_pred HHHHHHHHHhcCceEEeeEeeeee
Confidence 999999999999999987776654
No 9
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.47 E-value=5.1e-13 Score=115.75 Aligned_cols=136 Identities=19% Similarity=0.244 Sum_probs=95.6
Q ss_pred CCcceEEeecCCce-----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCcccEeeHhhh
Q 043063 159 KGVKRLVDVGGSAG-----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPAADAIFMKWV 212 (301)
Q Consensus 159 ~~~~~vlDvGgG~g-----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~~D~v~~~~v 212 (301)
.+..+|||||||+| +++|. |.+++.+++ ..+++++.+|+.+. .+..|++++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 45679999999996 45787 888888754 24899999998764 555799999999
Q ss_pred hccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHh-----hh--hhhccHHHHh--hhhcc--ccccCHHHH
Q 043063 213 LTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRT-----RA--LLEGDIFVMT--IYRAK--GKHMTEQEF 281 (301)
Q Consensus 213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~-----~~--~~~~d~~m~~--~~~~~--g~~rt~~e~ 281 (301)
+|++++++...++++++++|+|||.+++.|.+..++....+.. .+ ...+...... ..... -...|.++.
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~ 214 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETH 214 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHH
Confidence 9999988778999999999999999999997766543211110 00 0001000000 00000 123489999
Q ss_pred HHHHHhCCCCceE
Q 043063 282 KQLGFSAGFPHLR 294 (301)
Q Consensus 282 ~~~l~~aGf~~~~ 294 (301)
.++|+++||+.+.
T Consensus 215 ~~~L~~aGF~~v~ 227 (247)
T PRK15451 215 KARLHKAGFEHSE 227 (247)
T ss_pred HHHHHHcCchhHH
Confidence 9999999998754
No 10
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.44 E-value=1.5e-12 Score=108.99 Aligned_cols=134 Identities=17% Similarity=0.233 Sum_probs=97.6
Q ss_pred CCcceEEeecCCce---------------------eeeeh-hHHHhhCCC---------CCceeEEeCCCCcc-CCc--c
Q 043063 159 KGVKRLVDVGGSAG---------------------INFDL-PEVVAEAPS---------IPGVTHIGGDMFKS-IPA--A 204 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------------~~~Dl-p~v~~~a~~---------~~ri~~~~gd~~~~-~p~--~ 204 (301)
....++|||+||+| ++.|. |++++.+.+ ..++.++++|..+- +|. .
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 34589999999995 57898 888887653 25699999998764 776 4
Q ss_pred cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhh--hhcc---------------HHHHh
Q 043063 205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRAL--LEGD---------------IFVMT 267 (301)
Q Consensus 205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~--~~~d---------------~~m~~ 267 (301)
|.|.+..-+.+|++. .+.|+.++++|||||++.+.|+-.-+.. +..++. ++++ ...++
T Consensus 179 D~yTiafGIRN~th~--~k~l~EAYRVLKpGGrf~cLeFskv~~~---~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLv 253 (296)
T KOG1540|consen 179 DAYTIAFGIRNVTHI--QKALREAYRVLKPGGRFSCLEFSKVENE---PLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLV 253 (296)
T ss_pred eeEEEecceecCCCH--HHHHHHHHHhcCCCcEEEEEEccccccH---HHHHHHHhhhhhhhchhhHhhhhhHhhhhhHH
Confidence 999999999999996 4999999999999999999998655431 111111 1111 12232
Q ss_pred hhhccccccCHHHHHHHHHhCCCCceE-EEEcc
Q 043063 268 IYRAKGKHMTEQEFKQLGFSAGFPHLR-LYRVL 299 (301)
Q Consensus 268 ~~~~~g~~rt~~e~~~~l~~aGf~~~~-~~~~~ 299 (301)
++. -+-.+.+|++.+.+++||+.+. ...+.
T Consensus 254 eSI--~rfp~qe~f~~miedaGF~~~~~ye~lt 284 (296)
T KOG1540|consen 254 ESI--RRFPPQEEFASMIEDAGFSSVNGYENLT 284 (296)
T ss_pred hhh--hcCCCHHHHHHHHHHcCCccccccccce
Confidence 111 2234899999999999999986 44433
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=99.42 E-value=2e-12 Score=117.04 Aligned_cols=137 Identities=18% Similarity=0.175 Sum_probs=94.9
Q ss_pred CCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc--ccEeeHhhhh
Q 043063 159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA--ADAIFMKWVL 213 (301)
Q Consensus 159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~--~D~v~~~~vl 213 (301)
+...+|||||||+| +++|+ |.+++.+++ .++|+|+.+|+.+. ++. .|+|++..++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 45689999999995 56787 666665543 25899999998764 554 4999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCC-CChHH-hhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCC
Q 043063 214 TTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDS-NESQR-TRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFP 291 (301)
Q Consensus 214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~-~~~~~-~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~ 291 (301)
|+++|. .+++++++++|+|||+++|.+.+..... ..... ......++..... ..--...+.++|.++++++||.
T Consensus 197 ~h~~d~--~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~--~~~p~~~s~~~~~~~l~~aGf~ 272 (340)
T PLN02244 197 EHMPDK--RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAA--YYLPAWCSTSDYVKLAESLGLQ 272 (340)
T ss_pred hccCCH--HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhh--ccCCCCCCHHHHHHHHHHCCCC
Confidence 999985 4899999999999999999987643221 00000 0001111111111 0001124899999999999999
Q ss_pred ceEEEEcc
Q 043063 292 HLRLYRVL 299 (301)
Q Consensus 292 ~~~~~~~~ 299 (301)
.+++.+..
T Consensus 273 ~v~~~d~s 280 (340)
T PLN02244 273 DIKTEDWS 280 (340)
T ss_pred eeEeeeCc
Confidence 99988764
No 12
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.42 E-value=2.5e-12 Score=110.26 Aligned_cols=144 Identities=13% Similarity=0.206 Sum_probs=99.4
Q ss_pred hhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc--c
Q 043063 151 ILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA--A 204 (301)
Q Consensus 151 ~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~--~ 204 (301)
++..++ .....+|||+|||+| +++|+ |.+++.+++ .++++++.+|+.+. ++. .
T Consensus 37 ~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 115 (231)
T TIGR02752 37 TMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSF 115 (231)
T ss_pred HHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCc
Confidence 444443 566789999999995 56787 777766543 36899999998764 554 4
Q ss_pred cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccH----------------HHHhh
Q 043063 205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDI----------------FVMTI 268 (301)
Q Consensus 205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~----------------~m~~~ 268 (301)
|+|++..++|++++. .++|+++.+.|+|||++++.+...+... .........+.. ..+.
T Consensus 116 D~V~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~- 190 (231)
T TIGR02752 116 DYVTIGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQPTIP--GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQ- 190 (231)
T ss_pred cEEEEecccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCCCCh--HHHHHHHHHHcChhHHhhHHhcCCHHHHHHHH-
Confidence 999999999998876 4899999999999999999887654331 100000000000 0000
Q ss_pred hhccccccCHHHHHHHHHhCCCCceEEEEccCC
Q 043063 269 YRAKGKHMTEQEFKQLGFSAGFPHLRLYRVLDC 301 (301)
Q Consensus 269 ~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~~~ 301 (301)
.......+.+++.++|+++||+.+++.+...|
T Consensus 191 -~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g 222 (231)
T TIGR02752 191 -ESTRDFPGMDELAEMFQEAGFKDVEVKSYTGG 222 (231)
T ss_pred -HHHHHcCCHHHHHHHHHHcCCCeeEEEEcccc
Confidence 00112357899999999999999999887643
No 13
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.40 E-value=1.8e-12 Score=122.91 Aligned_cols=138 Identities=20% Similarity=0.255 Sum_probs=103.5
Q ss_pred HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc--cc
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA--AD 205 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~--~D 205 (301)
..+++.+. .++..+|||||||+| +++|+ +.+++.|++ ..+++|..+|++.. +|. .|
T Consensus 256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 334 (475)
T PLN02336 256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFD 334 (475)
T ss_pred HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEE
Confidence 44666664 666789999999995 57788 677766643 35899999999875 564 49
Q ss_pred EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHH
Q 043063 206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLG 285 (301)
Q Consensus 206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l 285 (301)
+|++..++++++|. .++|++++++|+|||++++.+.+..... +.+. .. .. .. ..+...++..++.+++
T Consensus 335 ~I~s~~~l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~-~~~~--~~---~~-~~---~~g~~~~~~~~~~~~l 402 (475)
T PLN02336 335 VIYSRDTILHIQDK--PALFRSFFKWLKPGGKVLISDYCRSPGT-PSPE--FA---EY-IK---QRGYDLHDVQAYGQML 402 (475)
T ss_pred EEEECCcccccCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCC-CcHH--HH---HH-HH---hcCCCCCCHHHHHHHH
Confidence 99999999999886 4899999999999999999998765431 1111 11 11 11 2234567999999999
Q ss_pred HhCCCCceEEEEcc
Q 043063 286 FSAGFPHLRLYRVL 299 (301)
Q Consensus 286 ~~aGf~~~~~~~~~ 299 (301)
+++||+++.+.+.+
T Consensus 403 ~~aGF~~i~~~d~~ 416 (475)
T PLN02336 403 KDAGFDDVIAEDRT 416 (475)
T ss_pred HHCCCeeeeeecch
Confidence 99999999887643
No 14
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.40 E-value=4.7e-12 Score=110.30 Aligned_cols=142 Identities=20% Similarity=0.203 Sum_probs=94.0
Q ss_pred HHhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCCCCceeEEeCCCCccCCc--ccEeeHh
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPSIPGVTHIGGDMFKSIPA--ADAIFMK 210 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~~p~--~D~v~~~ 210 (301)
..+++.++ .....+|||||||+| +++|. |.+++.+++ .+++++.+|+.+..+. .|+|+++
T Consensus 19 ~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~~ 96 (255)
T PRK14103 19 YDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVSN 96 (255)
T ss_pred HHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEEe
Confidence 45666664 667789999999996 56788 888888764 4689999998654332 5999999
Q ss_pred hhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhh--hhccHHHHhh-hhccccccCHHHHHHHHHh
Q 043063 211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRAL--LEGDIFVMTI-YRAKGKHMTEQEFKQLGFS 287 (301)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~--~~~d~~m~~~-~~~~g~~rt~~e~~~~l~~ 287 (301)
.++|+++|. .++|++++++|+|||++++......+.+......... ..+...+... ...+....+.+++.++|++
T Consensus 97 ~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~ 174 (255)
T PRK14103 97 AALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTD 174 (255)
T ss_pred hhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHh
Confidence 999999875 5899999999999999988643211111000000000 0000000000 0112234589999999999
Q ss_pred CCCCceE
Q 043063 288 AGFPHLR 294 (301)
Q Consensus 288 aGf~~~~ 294 (301)
+||++..
T Consensus 175 aGf~v~~ 181 (255)
T PRK14103 175 AGCKVDA 181 (255)
T ss_pred CCCeEEE
Confidence 9998544
No 15
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.35 E-value=5.4e-12 Score=113.22 Aligned_cols=129 Identities=17% Similarity=0.127 Sum_probs=90.1
Q ss_pred CcceEEeecCCce--------------eeeeh-hHHHhhC-------CCCCceeEEeCCCCcc-CCc-ccEeeHhhhhcc
Q 043063 160 GVKRLVDVGGSAG--------------INFDL-PEVVAEA-------PSIPGVTHIGGDMFKS-IPA-ADAIFMKWVLTT 215 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a-------~~~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~ 215 (301)
...+|||||||+| +++|. +..+..+ ....+|.++.+|+.+. .+. .|+|++..+|||
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~H 201 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYH 201 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhhc
Confidence 3479999999996 56786 4343321 1135899999988643 333 499999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCC--hHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCce
Q 043063 216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNE--SQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHL 293 (301)
Q Consensus 216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~--~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~ 293 (301)
..|. ..+|+++++.|+|||++++.+.+.+.+... .|...+.. |.. --..+|.+++..+|+++||+.+
T Consensus 202 ~~dp--~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~-----~~~----~~~lps~~~l~~~L~~aGF~~i 270 (322)
T PRK15068 202 RRSP--LDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAK-----MRN----VYFIPSVPALKNWLERAGFKDV 270 (322)
T ss_pred cCCH--HHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhc-----Ccc----ceeCCCHHHHHHHHHHcCCceE
Confidence 8875 489999999999999998877666543211 01111100 100 0124589999999999999999
Q ss_pred EEEEcc
Q 043063 294 RLYRVL 299 (301)
Q Consensus 294 ~~~~~~ 299 (301)
++....
T Consensus 271 ~~~~~~ 276 (322)
T PRK15068 271 RIVDVS 276 (322)
T ss_pred EEEeCC
Confidence 988654
No 16
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.34 E-value=1.1e-11 Score=110.17 Aligned_cols=129 Identities=17% Similarity=0.117 Sum_probs=89.7
Q ss_pred CcceEEeecCCce--------------eeeeh-hHHHhhC-------CCCCceeEEeCCCCcc-CC-cccEeeHhhhhcc
Q 043063 160 GVKRLVDVGGSAG--------------INFDL-PEVVAEA-------PSIPGVTHIGGDMFKS-IP-AADAIFMKWVLTT 215 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a-------~~~~ri~~~~gd~~~~-~p-~~D~v~~~~vlh~ 215 (301)
...+|||||||+| +++|. +.++..+ ....++.+...++.+. .. ..|+|++..+||+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL~H 200 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLYH 200 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchhhc
Confidence 4579999999995 56786 4454332 1246788888876432 11 3599999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCC--hHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCce
Q 043063 216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNE--SQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHL 293 (301)
Q Consensus 216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~--~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~ 293 (301)
+++. ..+|++++++|+|||.|++.+.+.+.+... .|...+. .|.. . -..++.+++..+|+++||+.+
T Consensus 201 ~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~-----k~~n--v--~flpS~~~L~~~L~~aGF~~V 269 (314)
T TIGR00452 201 RKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYA-----KMKN--V--YFIPSVSALKNWLEKVGFENF 269 (314)
T ss_pred cCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHH-----hccc--c--ccCCCHHHHHHHHHHCCCeEE
Confidence 9876 489999999999999999988766533211 0111110 1110 0 123589999999999999999
Q ss_pred EEEEcc
Q 043063 294 RLYRVL 299 (301)
Q Consensus 294 ~~~~~~ 299 (301)
++....
T Consensus 270 ~i~~~~ 275 (314)
T TIGR00452 270 RILDVL 275 (314)
T ss_pred EEEecc
Confidence 988654
No 17
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.34 E-value=5.8e-12 Score=112.90 Aligned_cols=124 Identities=27% Similarity=0.436 Sum_probs=93.2
Q ss_pred CcceEEeecCCce---------------eeeeh-hHHHhhCCC---CCceeEEeCCCCcc-CCc--ccEeeHhhhhccCC
Q 043063 160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS---IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWT 217 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~---~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~ 217 (301)
+..+|||||||+| +++|. +.+++.+++ ..+++++.+|+.+. ++. .|+|++..++|+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 4579999999996 45687 777777654 35899999998764 544 49999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEE
Q 043063 218 DDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR 297 (301)
Q Consensus 218 d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~ 297 (301)
+.+ ++|+++++.|+|||++++.+.+.++. +..+ ...+..+. ..+.+|+.++|+++||+.+++.+
T Consensus 193 d~~--~~L~e~~rvLkPGG~LvIi~~~~p~~----~~~r--~~~~~~~~--------~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 193 DPQ--RGIKEAYRVLKIGGKACLIGPVHPTF----WLSR--FFADVWML--------FPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred CHH--HHHHHHHHhcCCCcEEEEEEecCcch----hHHH--Hhhhhhcc--------CCCHHHHHHHHHHCCCeEEEEEE
Confidence 874 79999999999999999887654422 1111 11122221 24899999999999999999887
Q ss_pred cc
Q 043063 298 VL 299 (301)
Q Consensus 298 ~~ 299 (301)
+.
T Consensus 257 i~ 258 (340)
T PLN02490 257 IG 258 (340)
T ss_pred cC
Confidence 53
No 18
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.32 E-value=1.5e-11 Score=108.19 Aligned_cols=130 Identities=20% Similarity=0.380 Sum_probs=96.6
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc--ccEeeHhh
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA--ADAIFMKW 211 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~--~D~v~~~~ 211 (301)
.....+|||||||+| +++|. +.+++.+++ .+++++..+|+.+. ++. .|+|+...
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 556789999999996 35687 777777764 26899999998653 544 49999999
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCC
Q 043063 212 VLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFP 291 (301)
Q Consensus 212 vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~ 291 (301)
++|++++. .+++++++++|+|||++++.+....... +. .. ..+..+.. ...+...+..+|.++|+++||.
T Consensus 155 v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~~~---~~-~~--~~~~~~~~--~~~~~~~~~~e~~~~l~~aGf~ 224 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRGEL---PE-EI--RNDAELYA--GCVAGALQEEEYLAMLAEAGFV 224 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccCCC---CH-HH--HHhHHHHh--ccccCCCCHHHHHHHHHHCCCC
Confidence 99988875 4899999999999999999998765331 11 11 12222322 2234556899999999999999
Q ss_pred ceEEEE
Q 043063 292 HLRLYR 297 (301)
Q Consensus 292 ~~~~~~ 297 (301)
.+++..
T Consensus 225 ~v~i~~ 230 (272)
T PRK11873 225 DITIQP 230 (272)
T ss_pred ceEEEe
Confidence 987754
No 19
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.31 E-value=8.8e-12 Score=111.33 Aligned_cols=134 Identities=11% Similarity=0.018 Sum_probs=93.1
Q ss_pred CcceEEeecCCce-------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc--ccEeeHhhhhcc
Q 043063 160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTT 215 (301)
Q Consensus 160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~ 215 (301)
...+|||||||+| +++|. +.+++.++. ..+|+++.+|+.+. .+. .|+|++..+||+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 3468999999996 57797 777777653 14899999987542 332 599999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhcc----ccccCHHHHHHHHHhCCCC
Q 043063 216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK----GKHMTEQEFKQLGFSAGFP 291 (301)
Q Consensus 216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~----g~~rt~~e~~~~l~~aGf~ 291 (301)
++|.+ .+|+.+++.|+|||++++........ .+.........+.-+. ..+ .+.+|.+|+.++|+++||+
T Consensus 211 v~d~~--~~L~~l~r~LkPGG~liist~nr~~~---~~~~~i~~~eyi~~~l--p~gth~~~~f~tp~eL~~lL~~aGf~ 283 (322)
T PLN02396 211 VANPA--EFCKSLSALTIPNGATVLSTINRTMR---AYASTIVGAEYILRWL--PKGTHQWSSFVTPEELSMILQRASVD 283 (322)
T ss_pred cCCHH--HHHHHHHHHcCCCcEEEEEECCcCHH---HHHHhhhhHHHHHhcC--CCCCcCccCCCCHHHHHHHHHHcCCe
Confidence 99874 89999999999999999887532210 0000000000000000 011 2346999999999999999
Q ss_pred ceEEEEccC
Q 043063 292 HLRLYRVLD 300 (301)
Q Consensus 292 ~~~~~~~~~ 300 (301)
++++..+.+
T Consensus 284 i~~~~G~~~ 292 (322)
T PLN02396 284 VKEMAGFVY 292 (322)
T ss_pred EEEEeeeEE
Confidence 999877654
No 20
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.30 E-value=2e-11 Score=102.19 Aligned_cols=128 Identities=15% Similarity=0.188 Sum_probs=92.0
Q ss_pred hHHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc-cc
Q 043063 148 MTSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA-AD 205 (301)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~-~D 205 (301)
.+.+++.++ .....+|||+|||+| +++|. |.+++.+++ ..++++..+|+.+. ++. .|
T Consensus 19 ~~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 97 (197)
T PRK11207 19 HSEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYD 97 (197)
T ss_pred hHHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcC
Confidence 345555554 445689999999996 57898 777776653 24688999998754 444 59
Q ss_pred EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHH
Q 043063 206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLG 285 (301)
Q Consensus 206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l 285 (301)
+|++..++|++++++...++++++++|+|||++++.+....++.. .+. .. -...+.+|+.+++
T Consensus 98 ~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~-~~~-------~~---------~~~~~~~el~~~~ 160 (197)
T PRK11207 98 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP-CTV-------GF---------PFAFKEGELRRYY 160 (197)
T ss_pred EEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCC-CCC-------CC---------CCccCHHHHHHHh
Confidence 999999999999888899999999999999998777655443210 000 00 0123788888888
Q ss_pred HhCCCCceEE
Q 043063 286 FSAGFPHLRL 295 (301)
Q Consensus 286 ~~aGf~~~~~ 295 (301)
+ ||..+..
T Consensus 161 ~--~~~~~~~ 168 (197)
T PRK11207 161 E--GWEMVKY 168 (197)
T ss_pred C--CCeEEEe
Confidence 6 7877665
No 21
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.29 E-value=2.7e-11 Score=103.37 Aligned_cols=121 Identities=18% Similarity=0.210 Sum_probs=89.8
Q ss_pred ceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc-ccEeeHhhhhccC
Q 043063 162 KRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA-ADAIFMKWVLTTW 216 (301)
Q Consensus 162 ~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~~ 216 (301)
.+|||||||+| +++|+ |..++.+++ .+++++..+|+... .+. .|+|++..++|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 37999999995 35676 556555543 36899999998654 444 5999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEE
Q 043063 217 TDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLY 296 (301)
Q Consensus 217 ~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~ 296 (301)
++. ..+|+++++.|+|||++++.+...+.... ... + .......+..+|.++++++||++++..
T Consensus 81 ~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---~~~-----~-------~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 81 KDK--MDLFSNISRHLKDGGHLVLADFIANLLSA---IEH-----E-------ETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred CCH--HHHHHHHHHHcCCCCEEEEEEcccccCcc---ccc-----c-------ccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 875 59999999999999999999875432110 000 0 001123489999999999999999988
Q ss_pred Ecc
Q 043063 297 RVL 299 (301)
Q Consensus 297 ~~~ 299 (301)
++.
T Consensus 144 ~~~ 146 (224)
T smart00828 144 DAS 146 (224)
T ss_pred ECc
Confidence 764
No 22
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.27 E-value=6.2e-11 Score=101.87 Aligned_cols=145 Identities=18% Similarity=0.244 Sum_probs=97.0
Q ss_pred hhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc--
Q 043063 151 ILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA-- 203 (301)
Q Consensus 151 ~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~-- 203 (301)
++..+. ..+..+|||||||+| +++|. +.+++.+++ ..++++..+|+.+. .+.
T Consensus 43 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 121 (239)
T PRK00216 43 TIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNS 121 (239)
T ss_pred HHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCC
Confidence 344443 445679999999996 35676 566555543 25789999998764 332
Q ss_pred ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHH---hhhhcc--------
Q 043063 204 ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVM---TIYRAK-------- 272 (301)
Q Consensus 204 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~---~~~~~~-------- 272 (301)
.|+|++++++|++++. ..+|+++.+.|+|||++++.+...+.... ...........++ .....+
T Consensus 122 ~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~gG~li~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T PRK00216 122 FDAVTIAFGLRNVPDI--DKALREMYRVLKPGGRLVILEFSKPTNPP---LKKAYDFYLFKVLPLIGKLISKNAEAYSYL 196 (239)
T ss_pred ccEEEEecccccCCCH--HHHHHHHHHhccCCcEEEEEEecCCCchH---HHHHHHHHHHhhhHHHHHHHcCCcHHHHHH
Confidence 5999999999999875 58999999999999999999887654311 1000000000000 000000
Q ss_pred ----ccccCHHHHHHHHHhCCCCceEEEEccCC
Q 043063 273 ----GKHMTEQEFKQLGFSAGFPHLRLYRVLDC 301 (301)
Q Consensus 273 ----g~~rt~~e~~~~l~~aGf~~~~~~~~~~~ 301 (301)
...++.++|.++|+++||+.+++.+..++
T Consensus 197 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~ 229 (239)
T PRK00216 197 AESIRAFPDQEELAAMLEEAGFERVRYRNLTGG 229 (239)
T ss_pred HHHHHhCCCHHHHHHHHHhCCCceeeeeeeecC
Confidence 12347899999999999999999887543
No 23
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.26 E-value=4.8e-11 Score=101.47 Aligned_cols=137 Identities=18% Similarity=0.200 Sum_probs=94.8
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc-CCc--ccEeeHhhhh
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPA--ADAIFMKWVL 213 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~-~p~--~D~v~~~~vl 213 (301)
..+..+|||+|||.| +++|. +.+++.+++ ..+++++.+|+.+. .+. .|+|+++.++
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 445689999999985 35676 566655543 35799999998764 443 5999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhcc-----------------cccc
Q 043063 214 TTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK-----------------GKHM 276 (301)
Q Consensus 214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~-----------------g~~r 276 (301)
|+.++. ..+|+++++.|+|||++++.+...+... +...........++. ..+ ....
T Consensus 117 ~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 189 (223)
T TIGR01934 117 RNVTDI--QKALREMYRVLKPGGRLVILEFSKPANA---LLKKFYKFYLKNVLP--SIGGLISKNAEAYTYLPESIRAFP 189 (223)
T ss_pred CCcccH--HHHHHHHHHHcCCCcEEEEEEecCCCch---hhHHHHHHHHHHhhh--hhhhhhcCCchhhHHHHHHHHhCC
Confidence 988874 5899999999999999999987655331 111000011001100 000 1234
Q ss_pred CHHHHHHHHHhCCCCceEEEEccCC
Q 043063 277 TEQEFKQLGFSAGFPHLRLYRVLDC 301 (301)
Q Consensus 277 t~~e~~~~l~~aGf~~~~~~~~~~~ 301 (301)
+..+|.++|+++||+.+++.++.++
T Consensus 190 ~~~~~~~~l~~aGf~~~~~~~~~~~ 214 (223)
T TIGR01934 190 SQEELAAMLKEAGFEEVRYRSLTFG 214 (223)
T ss_pred CHHHHHHHHHHcCCccceeeeeecc
Confidence 7899999999999999999887653
No 24
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.25 E-value=1.3e-11 Score=99.41 Aligned_cols=123 Identities=24% Similarity=0.320 Sum_probs=82.6
Q ss_pred CCcceEEeecCCce-------------eeeeh-hHHHhhCCCCCceeEEeCCCCcc-CCc--ccEeeHhhhhccCChHHH
Q 043063 159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDEC 221 (301)
Q Consensus 159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~~ 221 (301)
....+|||||||.| +++|. +.+++. ..+.+...+.... .+. .|+|++..+||+++|.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~-- 94 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDP-- 94 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHH--
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhcccH--
Confidence 45689999999996 46676 566655 2222222211122 222 5999999999999974
Q ss_pred HHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceE
Q 043063 222 KLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLR 294 (301)
Q Consensus 222 ~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~ 294 (301)
..+|+++++.|+|||.+++.++..... . ...... ...... .......++.++|+++++++||++++
T Consensus 95 ~~~l~~l~~~LkpgG~l~~~~~~~~~~---~-~~~~~~-~~~~~~--~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 95 EEFLKELSRLLKPGGYLVISDPNRDDP---S-PRSFLK-WRYDRP--YGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHHHHHCEEEEEEEEEEEEBTTSH---H-HHHHHH-CCGTCH--HTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCCcch---h-hhHHHh-cCCcCc--cCceeccCCHHHHHHHHHHCCCEEEE
Confidence 699999999999999999999876421 0 111111 111111 00224567999999999999999876
No 25
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.24 E-value=7e-11 Score=102.89 Aligned_cols=142 Identities=18% Similarity=0.139 Sum_probs=93.3
Q ss_pred HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc--CC-c-c
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS--IP-A-A 204 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~--~p-~-~ 204 (301)
.+++.++ ++..+|||||||+| +++|. |.+++.+++ .++++++.+|+.+. .+ . .
T Consensus 36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~f 113 (255)
T PRK11036 36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPV 113 (255)
T ss_pred HHHHhcC--CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCC
Confidence 3444442 34579999999996 57898 788887754 25799999998642 33 2 5
Q ss_pred cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhh------hhccccccCH
Q 043063 205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI------YRAKGKHMTE 278 (301)
Q Consensus 205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~------~~~~g~~rt~ 278 (301)
|+|++..+||++++.. .+|++++++|+|||++++........ .........++...... ...-....+.
T Consensus 114 D~V~~~~vl~~~~~~~--~~l~~~~~~LkpgG~l~i~~~n~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 188 (255)
T PRK11036 114 DLILFHAVLEWVADPK--SVLQTLWSVLRPGGALSLMFYNANGL---LMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDP 188 (255)
T ss_pred CEEEehhHHHhhCCHH--HHHHHHHHHcCCCeEEEEEEECccHH---HHHHHHccChHHHHhcCccccccCCCCCCCCCH
Confidence 9999999999998764 89999999999999998875432210 00000000000000000 0000123578
Q ss_pred HHHHHHHHhCCCCceEEEEc
Q 043063 279 QEFKQLGFSAGFPHLRLYRV 298 (301)
Q Consensus 279 ~e~~~~l~~aGf~~~~~~~~ 298 (301)
+++.++|+++||+++++.-+
T Consensus 189 ~~l~~~l~~aGf~~~~~~gi 208 (255)
T PRK11036 189 EQVYQWLEEAGWQIMGKTGV 208 (255)
T ss_pred HHHHHHHHHCCCeEeeeeeE
Confidence 99999999999999876543
No 26
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.22 E-value=7.1e-11 Score=100.49 Aligned_cols=135 Identities=13% Similarity=0.037 Sum_probs=90.5
Q ss_pred CCcceEEeecCCce-------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCcccEeeHhhhhccCC
Q 043063 159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPAADAIFMKWVLTTWT 217 (301)
Q Consensus 159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~~D~v~~~~vlh~~~ 217 (301)
.+..+|||||||+| +++|. |++++.+++ .++++|..+|+.+.....|+|++..++++++
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~ 133 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYP 133 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCC
Confidence 34689999999996 56797 788877654 1489999999865433369999999999998
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhh-hhccccccCHHHHHHHHHhCCCCceEEE
Q 043063 218 DDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI-YRAKGKHMTEQEFKQLGFSAGFPHLRLY 296 (301)
Q Consensus 218 d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~-~~~~g~~rt~~e~~~~l~~aGf~~~~~~ 296 (301)
+++..++++++++.+++++.+.+. +.. +.......+....... ....-..++.+++.++++++||+++...
T Consensus 134 ~~~~~~~l~~i~~~~~~~~~i~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 134 ASDMAKALGHLASLTKERVIFTFA----PKT----AWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREG 205 (219)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEC----CCc----hHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeee
Confidence 877889999999988765443321 111 0111111111001000 0011234589999999999999999998
Q ss_pred EccCC
Q 043063 297 RVLDC 301 (301)
Q Consensus 297 ~~~~~ 301 (301)
.+.++
T Consensus 206 ~~~~~ 210 (219)
T TIGR02021 206 LVSTG 210 (219)
T ss_pred ccccc
Confidence 77654
No 27
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.20 E-value=1.1e-10 Score=110.57 Aligned_cols=130 Identities=19% Similarity=0.276 Sum_probs=97.4
Q ss_pred HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc---CCc--cc
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS---IPA--AD 205 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~---~p~--~D 205 (301)
..+++.++ ..+..+|||||||+| +++|. +.+++.+++ .++++++.+|+... +|. .|
T Consensus 27 ~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD 105 (475)
T PLN02336 27 PEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVD 105 (475)
T ss_pred hHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEE
Confidence 44555554 445679999999996 56787 777766542 36899999998642 443 49
Q ss_pred EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHH
Q 043063 206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLG 285 (301)
Q Consensus 206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l 285 (301)
+|++..++|++++++..++|+++++.|+|||++++.|.+...... ... . ......|+..+|.++|
T Consensus 106 ~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~---~~~---~---------~~~~~~~~~~~~~~~f 170 (475)
T PLN02336 106 LIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGD---SKR---K---------NNPTHYREPRFYTKVF 170 (475)
T ss_pred EEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCc---ccc---c---------CCCCeecChHHHHHHH
Confidence 999999999999988899999999999999999999987654321 100 0 1123345788999999
Q ss_pred HhCCCCceE
Q 043063 286 FSAGFPHLR 294 (301)
Q Consensus 286 ~~aGf~~~~ 294 (301)
.++||....
T Consensus 171 ~~~~~~~~~ 179 (475)
T PLN02336 171 KECHTRDED 179 (475)
T ss_pred HHheeccCC
Confidence 999997763
No 28
>PRK06922 hypothetical protein; Provisional
Probab=99.19 E-value=5.8e-11 Score=113.11 Aligned_cols=128 Identities=16% Similarity=0.261 Sum_probs=92.3
Q ss_pred CCchhccccCchHHHHHHHHHhcCCcc--chHHhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHH
Q 043063 120 EPTYSYYGKMPEMNGLMRKAMSGVSVP--FMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVV 181 (301)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~m~~~~~~--~~~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~ 181 (301)
..+|+++.++++..++|...|...... ........++ +.+..+|||||||+| +++|+ +.++
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML 455 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI 455 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 457888877777777777666543221 1111223343 666789999999996 56788 6677
Q ss_pred hhCCC-----CCceeEEeCCCCcc---CCc--ccEeeHhhhhccC-----------ChHHHHHHHHHHHHhCCCCCEEEE
Q 043063 182 AEAPS-----IPGVTHIGGDMFKS---IPA--ADAIFMKWVLTTW-----------TDDECKLIMENCYKAIPAGGKLIA 240 (301)
Q Consensus 182 ~~a~~-----~~ri~~~~gd~~~~---~p~--~D~v~~~~vlh~~-----------~d~~~~~iL~~~~~aL~pgg~lli 240 (301)
+.+++ ..+++++.+|..+. ++. .|+|+++.++|+| ++++..++|++++++|+|||+++|
T Consensus 456 e~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 456 DTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred HHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 77653 24688888997652 333 4999999999976 346788999999999999999999
Q ss_pred eccccCCC
Q 043063 241 CEPVLPDD 248 (301)
Q Consensus 241 ~e~~~~~~ 248 (301)
.|.+.++.
T Consensus 536 ~D~v~~E~ 543 (677)
T PRK06922 536 RDGIMTED 543 (677)
T ss_pred EeCccCCc
Confidence 99876544
No 29
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.19 E-value=8.5e-11 Score=102.84 Aligned_cols=146 Identities=14% Similarity=0.077 Sum_probs=94.3
Q ss_pred hHHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhC-------CCCCceeEEeCCCCccCCccc
Q 043063 148 MTSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEA-------PSIPGVTHIGGDMFKSIPAAD 205 (301)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a-------~~~~ri~~~~gd~~~~~p~~D 205 (301)
...+++.++ .++..+|||||||-| +++.+ ++-.+.+ ...+++++...|+.+.-+..|
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD 129 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFD 129 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-S
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCC
Confidence 356777775 889999999999995 45555 3333222 224799999999864333469
Q ss_pred EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHH
Q 043063 206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLG 285 (301)
Q Consensus 206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l 285 (301)
.|+...++.++..+.-..+++++.+.|+|||++++...+..... .........+...-- ..++|..++.+++...+
T Consensus 130 ~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~---~~~~~~~~~~~i~ky-iFPgg~lps~~~~~~~~ 205 (273)
T PF02353_consen 130 RIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPP---YHAERRSSSDFIRKY-IFPGGYLPSLSEILRAA 205 (273)
T ss_dssp EEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HH---HHHCTTCCCHHHHHH-TSTTS---BHHHHHHHH
T ss_pred EEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccccccc---chhhcCCCceEEEEe-eCCCCCCCCHHHHHHHH
Confidence 99999999999988888999999999999999999887775431 111000011221111 24678888999999999
Q ss_pred HhCCCCceEEEEc
Q 043063 286 FSAGFPHLRLYRV 298 (301)
Q Consensus 286 ~~aGf~~~~~~~~ 298 (301)
+++||++..+..+
T Consensus 206 ~~~~l~v~~~~~~ 218 (273)
T PF02353_consen 206 EDAGLEVEDVENL 218 (273)
T ss_dssp HHTT-EEEEEEE-
T ss_pred hcCCEEEEEEEEc
Confidence 9999999988765
No 30
>PRK08317 hypothetical protein; Provisional
Probab=99.18 E-value=2.3e-10 Score=98.16 Aligned_cols=140 Identities=17% Similarity=0.208 Sum_probs=92.5
Q ss_pred hhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc--cc
Q 043063 151 ILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA--AD 205 (301)
Q Consensus 151 ~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~--~D 205 (301)
+++.++ +.+..+|||+|||+| +++|. |..++.+++ ..++++..+|+... ++. .|
T Consensus 11 ~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 89 (241)
T PRK08317 11 TFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFD 89 (241)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCce
Confidence 334453 667789999999996 34576 555555543 36799999998753 443 49
Q ss_pred EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCC-CChHHhhhhhhccHHHHhhhhccccccCHHHHHHH
Q 043063 206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDS-NESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQL 284 (301)
Q Consensus 206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~-~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~ 284 (301)
+|++.+++|++++. ..+++++++.|+|||++++.+...+... ................ .......+..+|.++
T Consensus 90 ~v~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 163 (241)
T PRK08317 90 AVRSDRVLQHLEDP--ARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWS----DHFADPWLGRRLPGL 163 (241)
T ss_pred EEEEechhhccCCH--HHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHH----hcCCCCcHHHHHHHH
Confidence 99999999999986 4899999999999999999886432110 0000000111111111 111233467789999
Q ss_pred HHhCCCCceEEEE
Q 043063 285 GFSAGFPHLRLYR 297 (301)
Q Consensus 285 l~~aGf~~~~~~~ 297 (301)
++++||+.+++..
T Consensus 164 l~~aGf~~~~~~~ 176 (241)
T PRK08317 164 FREAGLTDIEVEP 176 (241)
T ss_pred HHHcCCCceeEEE
Confidence 9999999876654
No 31
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.17 E-value=4e-11 Score=90.73 Aligned_cols=82 Identities=24% Similarity=0.432 Sum_probs=66.0
Q ss_pred cceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCC-Ccc-CC-cccEeeHhh-hh
Q 043063 161 VKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDM-FKS-IP-AADAIFMKW-VL 213 (301)
Q Consensus 161 ~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~-~~~-~p-~~D~v~~~~-vl 213 (301)
..+|||||||+| +++|. |.+++.+++ .+||+++.+|+ ... .+ ..|+|++.. ++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 468999999995 67898 888777653 48999999999 333 33 369999999 67
Q ss_pred ccCCh-HHHHHHHHHHHHhCCCCCEEEEec
Q 043063 214 TTWTD-DECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 214 h~~~d-~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
|++.+ ++..++|+++++.|+|||+++|.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 75543 577899999999999999999865
No 32
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.16 E-value=5.6e-10 Score=97.50 Aligned_cols=88 Identities=19% Similarity=0.263 Sum_probs=71.8
Q ss_pred CCCcceEEeecCCce------------------------eeeeh-hHHHhhCCCC-------------------------
Q 043063 158 FKGVKRLVDVGGSAG------------------------INFDL-PEVVAEAPSI------------------------- 187 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g------------------------~~~Dl-p~v~~~a~~~------------------------- 187 (301)
..+..+|+|+|||+| ++.|+ +.+++.|++.
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 344579999999997 23476 7778777641
Q ss_pred --------CceeEEeCCCCcc-CCc--ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063 188 --------PGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVL 245 (301)
Q Consensus 188 --------~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~ 245 (301)
.+|+|..+|+.++ .|. .|+|+++++||+++++...+++++++++|+|||+|++-....
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSES 245 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECccc
Confidence 3799999999886 433 499999999999999888899999999999999999876543
No 33
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.16 E-value=1.6e-10 Score=96.58 Aligned_cols=128 Identities=16% Similarity=0.144 Sum_probs=87.9
Q ss_pred HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc-ccEe
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA-ADAI 207 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~-~D~v 207 (301)
..+++.++ .....+|||+|||+| +++|. |.+++.+++ .-++++...|+... ++. .|+|
T Consensus 20 ~~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I 98 (195)
T TIGR00477 20 SAVREAVK-TVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDFI 98 (195)
T ss_pred HHHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCEE
Confidence 34445553 444679999999996 57898 777776543 12367777787543 343 5999
Q ss_pred eHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHh
Q 043063 208 FMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFS 287 (301)
Q Consensus 208 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~ 287 (301)
+++.++|++++++...++++++++|+|||++++.+....+....++ . .....+.+|+.++|+
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~--------~---------~~~~~~~~el~~~f~- 160 (195)
T TIGR00477 99 FSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHM--------P---------FSFTFKEDELRQYYA- 160 (195)
T ss_pred EEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCC--------C---------cCccCCHHHHHHHhC-
Confidence 9999999998888889999999999999998887765432211000 0 011237888888885
Q ss_pred CCCCceEEE
Q 043063 288 AGFPHLRLY 296 (301)
Q Consensus 288 aGf~~~~~~ 296 (301)
+|++....
T Consensus 161 -~~~~~~~~ 168 (195)
T TIGR00477 161 -DWELLKYN 168 (195)
T ss_pred -CCeEEEee
Confidence 47766654
No 34
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.12 E-value=8e-11 Score=97.60 Aligned_cols=122 Identities=21% Similarity=0.340 Sum_probs=82.8
Q ss_pred CcceEEeecCCce-----e------eeeh----hHHHhhCCC-----CCc-eeEEeCCCCccCCc---ccEeeHhhhhcc
Q 043063 160 GVKRLVDVGGSAG-----I------NFDL----PEVVAEAPS-----IPG-VTHIGGDMFKSIPA---ADAIFMKWVLTT 215 (301)
Q Consensus 160 ~~~~vlDvGgG~g-----~------~~Dl----p~v~~~a~~-----~~r-i~~~~gd~~~~~p~---~D~v~~~~vlh~ 215 (301)
+..+.||.|+|.| + -+|+ +.-++.|++ ..+ .++.+.-+-+-.|. .|+||+.+++-|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 4689999999997 1 1233 455555542 233 33333322222343 599999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEE
Q 043063 216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRL 295 (301)
Q Consensus 216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~ 295 (301)
++|++.+.+|++++++|+|+|.|+|-|.+...+. ..+| ...++-.|+.+.|+++|++||+++++.
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D------~~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFD------EEDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEE------TTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccC------CccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 9999999999999999999999999999887441 1233 244577799999999999999999875
Q ss_pred E
Q 043063 296 Y 296 (301)
Q Consensus 296 ~ 296 (301)
.
T Consensus 200 ~ 200 (218)
T PF05891_consen 200 E 200 (218)
T ss_dssp E
T ss_pred c
Confidence 4
No 35
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.12 E-value=1.3e-09 Score=95.01 Aligned_cols=138 Identities=20% Similarity=0.234 Sum_probs=92.4
Q ss_pred hHHhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC-CCceeEEeCCCCccCC--cccEee
Q 043063 148 MTSILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKSIP--AADAIF 208 (301)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~~p--~~D~v~ 208 (301)
...++..++ ..+..+|||||||+| +++|. +.+++.+++ .++++++.+|+.+..+ ..|+|+
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 455666664 677889999999996 46787 788887765 4689999999875433 259999
Q ss_pred HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhh---hh---ccHHHHhhhhccccccCHHHHH
Q 043063 209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRAL---LE---GDIFVMTIYRAKGKHMTEQEFK 282 (301)
Q Consensus 209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~---~~---~d~~m~~~~~~~g~~rt~~e~~ 282 (301)
++.++|+++|. .++|++++++|+|||++++.- +.... .+..... .. +...+...........+..++.
T Consensus 99 ~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~~---~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 172 (258)
T PRK01683 99 ANASLQWLPDH--LELFPRLVSLLAPGGVLAVQM---PDNLD-EPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYY 172 (258)
T ss_pred EccChhhCCCH--HHHHHHHHHhcCCCcEEEEEC---CCCCC-CHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHH
Confidence 99999988875 489999999999999998852 21111 1110000 00 0001100000012345788999
Q ss_pred HHHHhCCCCc
Q 043063 283 QLGFSAGFPH 292 (301)
Q Consensus 283 ~~l~~aGf~~ 292 (301)
+++.++|+.+
T Consensus 173 ~~l~~~g~~v 182 (258)
T PRK01683 173 DALAPAACRV 182 (258)
T ss_pred HHHHhCCCce
Confidence 9999999864
No 36
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.10 E-value=6.1e-11 Score=95.04 Aligned_cols=122 Identities=25% Similarity=0.385 Sum_probs=85.3
Q ss_pred CcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CC-cccEeeHhhh
Q 043063 160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IP-AADAIFMKWV 212 (301)
Q Consensus 160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p-~~D~v~~~~v 212 (301)
+..+|||+|||+| +++|. |.+++.+++ .++++|..+|+.+. ++ ..|+|++..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 4679999999996 57897 888888764 36899999999882 22 3699999999
Q ss_pred hccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhh-hhccccccCHHHHHHHHHhCC
Q 043063 213 LTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI-YRAKGKHMTEQEFKQLGFSAG 289 (301)
Q Consensus 213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~-~~~~g~~rt~~e~~~~l~~aG 289 (301)
+|++++.. .+|+++++.|+++|.+++.+......- ...... ...+.+-.. ....+. +.++|..+|+++|
T Consensus 83 l~~~~~~~--~~l~~~~~~lk~~G~~i~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 83 LHHFPDPE--KVLKNIIRLLKPGGILIISDPNHNDEL-PEQLEE---LMNLYSEVWSMIYIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp GGGTSHHH--HHHHHHHHHEEEEEEEEEEEEEHSHHH-HHHHHH---HHHHHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred hhhccCHH--HHHHHHHHHcCCCcEEEEEECChHHHH-HHHHHH---HHHHHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence 99999874 899999999999999999998732210 011111 111111110 011122 8899999999998
No 37
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.08 E-value=6.1e-10 Score=96.46 Aligned_cols=141 Identities=21% Similarity=0.186 Sum_probs=107.5
Q ss_pred HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCcccE
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPAADA 206 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~~D~ 206 (301)
+.+++.+. +.+..+|||||||-| +++++ ++..+.+++ .++|++...|+.+..+..|-
T Consensus 62 ~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDr 140 (283)
T COG2230 62 DLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDR 140 (283)
T ss_pred HHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccce
Confidence 55677775 999999999999995 56676 444444332 36899999998654444799
Q ss_pred eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHH
Q 043063 207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGF 286 (301)
Q Consensus 207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~ 286 (301)
|+...+++++..+.-...++++++.|+|||++++.....++.+.. ....+..-. ..++|..++.+++....+
T Consensus 141 IvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~----~~~~~i~~y----iFPgG~lPs~~~i~~~~~ 212 (283)
T COG2230 141 IVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR----RFPDFIDKY----IFPGGELPSISEILELAS 212 (283)
T ss_pred eeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc----cchHHHHHh----CCCCCcCCCHHHHHHHHH
Confidence 999999999999888999999999999999999988877764320 111122222 246889999999999999
Q ss_pred hCCCCceEEEEc
Q 043063 287 SAGFPHLRLYRV 298 (301)
Q Consensus 287 ~aGf~~~~~~~~ 298 (301)
++||.+..+..+
T Consensus 213 ~~~~~v~~~~~~ 224 (283)
T COG2230 213 EAGFVVLDVESL 224 (283)
T ss_pred hcCcEEehHhhh
Confidence 999998876543
No 38
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.06 E-value=7.6e-10 Score=89.46 Aligned_cols=124 Identities=19% Similarity=0.265 Sum_probs=84.3
Q ss_pred eeeh-hHHHhhCCC---------CCceeEEeCCCCcc-CCc--ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEE
Q 043063 174 NFDL-PEVVAEAPS---------IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIA 240 (301)
Q Consensus 174 ~~Dl-p~v~~~a~~---------~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli 240 (301)
++|. +++++.|++ ..+|+|+.+|+.+- ++. .|+|++..++|+++|. .++|++++++|+|||+++|
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCcCeEEEE
Confidence 5787 788877642 14799999998753 444 4999999999999875 5999999999999999999
Q ss_pred eccccCCCCCChHHhhhhhh----------c---cHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEccCC
Q 043063 241 CEPVLPDDSNESQRTRALLE----------G---DIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVLDC 301 (301)
Q Consensus 241 ~e~~~~~~~~~~~~~~~~~~----------~---d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~~~ 301 (301)
.|...+...-......+... . ..-.+. ..-...++.+|+.++|+++||+.++...+..|
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~--~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g 151 (160)
T PLN02232 80 LDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLK--YSINGYLTGEELETLALEAGFSSACHYEISGG 151 (160)
T ss_pred EECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHH--HHHHHCcCHHHHHHHHHHcCCCcceEEECcch
Confidence 99876543100000000000 0 000000 00022358999999999999999998877654
No 39
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.03 E-value=2.3e-09 Score=93.10 Aligned_cols=133 Identities=15% Similarity=0.197 Sum_probs=90.2
Q ss_pred HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCCC-CceeEEeCCCCcc-CCc--ccEeeHh
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI-PGVTHIGGDMFKS-IPA--ADAIFMK 210 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~-~ri~~~~gd~~~~-~p~--~D~v~~~ 210 (301)
..+++.++ .....+|||+|||+| +++|+ |.+++.+++. ..+.++.+|+... ++. .|+|+++
T Consensus 32 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~ 110 (251)
T PRK10258 32 DALLAMLP-QRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSN 110 (251)
T ss_pred HHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEEC
Confidence 44455553 345678999999996 56798 8888877653 4467888998663 544 4999999
Q ss_pred hhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCC
Q 043063 211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF 290 (301)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf 290 (301)
.++|..+|. ..+|++++++|+|||.+++.......-. .........+. . .....-.+.++|.+++...|+
T Consensus 111 ~~l~~~~d~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~---el~~~~~~~~~--~---~~~~~~~~~~~l~~~l~~~~~ 180 (251)
T PRK10258 111 LAVQWCGNL--STALRELYRVVRPGGVVAFTTLVQGSLP---ELHQAWQAVDE--R---PHANRFLPPDAIEQALNGWRY 180 (251)
T ss_pred chhhhcCCH--HHHHHHHHHHcCCCeEEEEEeCCCCchH---HHHHHHHHhcc--C---CccccCCCHHHHHHHHHhCCc
Confidence 999877765 5899999999999999998776443210 01100000010 0 111233589999999999887
Q ss_pred Cc
Q 043063 291 PH 292 (301)
Q Consensus 291 ~~ 292 (301)
..
T Consensus 181 ~~ 182 (251)
T PRK10258 181 QH 182 (251)
T ss_pred ee
Confidence 64
No 40
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.02 E-value=1.6e-09 Score=88.88 Aligned_cols=147 Identities=19% Similarity=0.225 Sum_probs=103.7
Q ss_pred hHHhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC-CCceeEEeCCCCccCCc--ccEee
Q 043063 148 MTSILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKSIPA--ADAIF 208 (301)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~~p~--~D~v~ 208 (301)
+.+++..++ .....+|+|+|||.| +++|. |+|++.|++ ...++|..+|+.+..|. .|+++
T Consensus 19 a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllf 97 (257)
T COG4106 19 ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLF 97 (257)
T ss_pred HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhh
Confidence 456777775 778899999999996 57897 999999875 58999999999877775 59999
Q ss_pred HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHh--hhhhh--ccHHHHhhhhccccccCHHHHHHH
Q 043063 209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRT--RALLE--GDIFVMTIYRAKGKHMTEQEFKQL 284 (301)
Q Consensus 209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~--~~~~~--~d~~m~~~~~~~g~~rt~~e~~~~ 284 (301)
.+.+||-++|. .++|.++...|.|||.|.+.=+-.-+.+ ++.. +.... +...+...........+.+.|.++
T Consensus 98 aNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQmPdN~dep--sH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~l 173 (257)
T COG4106 98 ANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQMPDNLDEP--SHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYEL 173 (257)
T ss_pred hhhhhhhcccc--HHHHHHHHHhhCCCceEEEECCCccCch--hHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHH
Confidence 99999988886 5999999999999999998755332221 1110 00000 011111000112345689999999
Q ss_pred HHhCCCCceEEEEccC
Q 043063 285 GFSAGFPHLRLYRVLD 300 (301)
Q Consensus 285 l~~aGf~~~~~~~~~~ 300 (301)
|...+ ..+.++...|
T Consensus 174 La~~~-~rvDiW~T~Y 188 (257)
T COG4106 174 LAPLA-CRVDIWHTTY 188 (257)
T ss_pred hCccc-ceeeeeeeec
Confidence 98887 6666666554
No 41
>PRK06202 hypothetical protein; Provisional
Probab=99.00 E-value=2.4e-09 Score=91.89 Aligned_cols=133 Identities=17% Similarity=0.179 Sum_probs=86.1
Q ss_pred CCcceEEeecCCce-------------------eeeeh-hHHHhhCCCC---CceeEEeCCCCcc-CC-c-ccEeeHhhh
Q 043063 159 KGVKRLVDVGGSAG-------------------INFDL-PEVVAEAPSI---PGVTHIGGDMFKS-IP-A-ADAIFMKWV 212 (301)
Q Consensus 159 ~~~~~vlDvGgG~g-------------------~~~Dl-p~v~~~a~~~---~ri~~~~gd~~~~-~p-~-~D~v~~~~v 212 (301)
.+..+|||||||+| +++|+ |.+++.+++. .++++..++.... .+ . .|+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45679999999996 34576 7888777653 4566665543221 23 2 599999999
Q ss_pred hccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHH-hh-hhcc-----ccccCHHHHHHHH
Q 043063 213 LTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVM-TI-YRAK-----GKHMTEQEFKQLG 285 (301)
Q Consensus 213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~-~~-~~~~-----g~~rt~~e~~~~l 285 (301)
||+++|++...+|+++++.++ |.+++.|...+.. .+. .......... .. ...+ -.-+|.+|+.+++
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~---~~~--~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll 211 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL---AYA--LFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALA 211 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH---HHH--HHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHh
Confidence 999999888899999999987 5666666644311 110 0000000000 00 0011 1235899999999
Q ss_pred HhCCCCceEEEEcc
Q 043063 286 FSAGFPHLRLYRVL 299 (301)
Q Consensus 286 ~~aGf~~~~~~~~~ 299 (301)
++ ||++....+..
T Consensus 212 ~~-Gf~~~~~~~~~ 224 (232)
T PRK06202 212 PQ-GWRVERQWPFR 224 (232)
T ss_pred hC-CCeEEecccee
Confidence 99 99998887754
No 42
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.00 E-value=1.7e-09 Score=95.76 Aligned_cols=127 Identities=15% Similarity=0.138 Sum_probs=88.5
Q ss_pred HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc-ccEee
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA-ADAIF 208 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~-~D~v~ 208 (301)
.++..++ .....+|||||||+| +.+|. +.+++.+++ .-++++..+|+... ++. .|+|+
T Consensus 111 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~ 189 (287)
T PRK12335 111 EVLEAVQ-TVKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFIL 189 (287)
T ss_pred HHHHHhh-ccCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEE
Confidence 3444443 334569999999996 57787 677665543 23688888888665 444 59999
Q ss_pred HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhC
Q 043063 209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSA 288 (301)
Q Consensus 209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~a 288 (301)
+..+||++++++...+++++++.|+|||++++......+... .+ .. .....+.+|+.++++.
T Consensus 190 ~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~-~~-------~p---------~~~~~~~~el~~~~~~- 251 (287)
T PRK12335 190 STVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP-CP-------MP---------FSFTFKEGELKDYYQD- 251 (287)
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCC-CC-------CC---------CCcccCHHHHHHHhCC-
Confidence 999999999888899999999999999998876654433211 00 00 0122478889888854
Q ss_pred CCCceEEE
Q 043063 289 GFPHLRLY 296 (301)
Q Consensus 289 Gf~~~~~~ 296 (301)
|.+++..
T Consensus 252 -~~i~~~~ 258 (287)
T PRK12335 252 -WEIVKYN 258 (287)
T ss_pred -CEEEEEe
Confidence 7777654
No 43
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.00 E-value=2e-09 Score=92.08 Aligned_cols=133 Identities=18% Similarity=0.202 Sum_probs=86.9
Q ss_pred CCcceEEeecCCce-------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCcccEeeHhhhhccCC
Q 043063 159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPAADAIFMKWVLTTWT 217 (301)
Q Consensus 159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~~D~v~~~~vlh~~~ 217 (301)
.+..+|||||||+| +++|. +.+++.+++ .+++++..+|+-......|+|++..++|+++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~~ 141 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHYP 141 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcCC
Confidence 45679999999996 46787 777777654 1589999999422222359999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHH--HhhhhccccccCHHHHHHHHHhCCCCceEE
Q 043063 218 DDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFV--MTIYRAKGKHMTEQEFKQLGFSAGFPHLRL 295 (301)
Q Consensus 218 d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m--~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~ 295 (301)
+++...+++++.+.++ ++.++.... .. .... ......-.. .. ........+..+|.++++++||++.++
T Consensus 142 ~~~~~~~l~~l~~~~~-~~~~i~~~~---~~---~~~~-~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 212 (230)
T PRK07580 142 QEDAARMLAHLASLTR-GSLIFTFAP---YT---PLLA-LLHWIGGLFPGPS-RTTRIYPHREKGIRRALAAAGFKVVRT 212 (230)
T ss_pred HHHHHHHHHHHHhhcC-CeEEEEECC---cc---HHHH-HHHHhccccCCcc-CCCCccccCHHHHHHHHHHCCCceEee
Confidence 9888999999998764 333333221 11 0000 000000000 00 011233458899999999999999999
Q ss_pred EEccC
Q 043063 296 YRVLD 300 (301)
Q Consensus 296 ~~~~~ 300 (301)
.++..
T Consensus 213 ~~~~~ 217 (230)
T PRK07580 213 ERISS 217 (230)
T ss_pred eeccc
Confidence 88764
No 44
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.99 E-value=1.6e-09 Score=88.33 Aligned_cols=133 Identities=17% Similarity=0.123 Sum_probs=88.7
Q ss_pred CcceEEeecCCcee--------------eeeh-hHHHhhCC------CCCcee-EEeCCCCcc--CCc--ccEeeHhhhh
Q 043063 160 GVKRLVDVGGSAGI--------------NFDL-PEVVAEAP------SIPGVT-HIGGDMFKS--IPA--ADAIFMKWVL 213 (301)
Q Consensus 160 ~~~~vlDvGgG~g~--------------~~Dl-p~v~~~a~------~~~ri~-~~~gd~~~~--~p~--~D~v~~~~vl 213 (301)
+...||+||||+|. .+|. |.+-+.+. +..++. |+.++...- +++ .|+|++..+|
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 34668999999974 4465 44433332 135676 777775432 344 3999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCce
Q 043063 214 TTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHL 293 (301)
Q Consensus 214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~ 293 (301)
-...| .++.|+++++.|+|||+++.+|.+..+.. ....-.....+-.... ...|...|.+.|+.+ +++-|+..
T Consensus 156 CSve~--~~k~L~e~~rlLRpgG~iifiEHva~~y~--~~n~i~q~v~ep~~~~--~~dGC~ltrd~~e~L-eda~f~~~ 228 (252)
T KOG4300|consen 156 CSVED--PVKQLNEVRRLLRPGGRIIFIEHVAGEYG--FWNRILQQVAEPLWHL--ESDGCVLTRDTGELL-EDAEFSID 228 (252)
T ss_pred eccCC--HHHHHHHHHHhcCCCcEEEEEecccccch--HHHHHHHHHhchhhhe--eccceEEehhHHHHh-hhcccccc
Confidence 65555 57999999999999999999999887552 1111122223321121 456888888887655 77889888
Q ss_pred EEEEcc
Q 043063 294 RLYRVL 299 (301)
Q Consensus 294 ~~~~~~ 299 (301)
+.....
T Consensus 229 ~~kr~~ 234 (252)
T KOG4300|consen 229 SCKRFN 234 (252)
T ss_pred hhhccc
Confidence 776554
No 45
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.99 E-value=2.4e-09 Score=98.29 Aligned_cols=139 Identities=12% Similarity=0.004 Sum_probs=97.9
Q ss_pred HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC---CCceeEEeCCCCccCCcccEeeHh
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS---IPGVTHIGGDMFKSIPAADAIFMK 210 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~---~~ri~~~~gd~~~~~p~~D~v~~~ 210 (301)
..+++.++ ..+..+|||||||+| +++|+ ++.++.+++ ...+++...|+.+.-...|+|+..
T Consensus 157 ~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~ 235 (383)
T PRK11705 157 DLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSV 235 (383)
T ss_pred HHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEe
Confidence 34555564 667789999999995 46787 777776654 235788888875432235999999
Q ss_pred hhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCC
Q 043063 211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF 290 (301)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf 290 (301)
.++++.++.....+++++++.|+|||++++.+...+.... .. ..+++... .++|..++.+++.+.++ .||
T Consensus 236 ~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~-~~----~~~i~~yi----fp~g~lps~~~i~~~~~-~~~ 305 (383)
T PRK11705 236 GMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDT-NV----DPWINKYI----FPNGCLPSVRQIAQASE-GLF 305 (383)
T ss_pred CchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCC-CC----CCCceeee----cCCCcCCCHHHHHHHHH-CCc
Confidence 9999998877789999999999999999998765543211 00 11222111 24577778999888866 588
Q ss_pred CceEEEEc
Q 043063 291 PHLRLYRV 298 (301)
Q Consensus 291 ~~~~~~~~ 298 (301)
.+.++..+
T Consensus 306 ~v~d~~~~ 313 (383)
T PRK11705 306 VMEDWHNF 313 (383)
T ss_pred EEEEEecC
Confidence 88877654
No 46
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.98 E-value=1e-09 Score=92.69 Aligned_cols=132 Identities=16% Similarity=0.084 Sum_probs=93.3
Q ss_pred cceEEeecCCce-------------eeeeh-hHHHhhCCCC--------C----ceeEEeCCCCccCCcccEeeHhhhhc
Q 043063 161 VKRLVDVGGSAG-------------INFDL-PEVVAEAPSI--------P----GVTHIGGDMFKSIPAADAIFMKWVLT 214 (301)
Q Consensus 161 ~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~--------~----ri~~~~gd~~~~~p~~D~v~~~~vlh 214 (301)
..+|||||||.| +++|. +.+++.|++. . |+++...|.....+..|+|+++.++|
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsevle 169 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEVLE 169 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHHHH
Confidence 367999999996 57898 7888887641 2 57888887766566689999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhcc-----ccccCHHHHHHHHHhCC
Q 043063 215 TWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK-----GKHMTEQEFKQLGFSAG 289 (301)
Q Consensus 215 ~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~-----g~~rt~~e~~~~l~~aG 289 (301)
|..|. +.+++.+.+.|+|+|+++|..--..-. +. .....++=+.+. ..+. .+-.+.+|..++++.+|
T Consensus 170 HV~dp--~~~l~~l~~~lkP~G~lfittinrt~l---S~--~~~i~~~E~vl~-ivp~Gth~~ekfi~p~e~~~~l~~~~ 241 (282)
T KOG1270|consen 170 HVKDP--QEFLNCLSALLKPNGRLFITTINRTIL---SF--AGTIFLAEIVLR-IVPKGTHTWEKFINPEELTSILNANG 241 (282)
T ss_pred HHhCH--HHHHHHHHHHhCCCCceEeeehhhhHH---Hh--hccccHHHHHHH-hcCCCCcCHHHcCCHHHHHHHHHhcC
Confidence 99886 499999999999999999887643211 11 001111111111 0111 23458999999999999
Q ss_pred CCceEEEEccC
Q 043063 290 FPHLRLYRVLD 300 (301)
Q Consensus 290 f~~~~~~~~~~ 300 (301)
+++..+....|
T Consensus 242 ~~v~~v~G~~y 252 (282)
T KOG1270|consen 242 AQVNDVVGEVY 252 (282)
T ss_pred cchhhhhcccc
Confidence 98887765443
No 47
>PRK05785 hypothetical protein; Provisional
Probab=98.97 E-value=4.4e-09 Score=89.84 Aligned_cols=133 Identities=10% Similarity=0.010 Sum_probs=86.3
Q ss_pred cceEEeecCCce--------------eeeeh-hHHHhhCCCCCceeEEeCCCCcc-CCc--ccEeeHhhhhccCChHHHH
Q 043063 161 VKRLVDVGGSAG--------------INFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDECK 222 (301)
Q Consensus 161 ~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~~~ 222 (301)
..+|||||||+| +++|. +++++.+++. ..++.+|+... ++. .|+|++..+||+++|. .
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~--~ 127 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI--E 127 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH--H
Confidence 579999999996 46787 8888887653 34667887653 554 4999999999999886 4
Q ss_pred HHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccc-------------cccCHHHHHHHHHhCC
Q 043063 223 LIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKG-------------KHMTEQEFKQLGFSAG 289 (301)
Q Consensus 223 ~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g-------------~~rt~~e~~~~l~~aG 289 (301)
+.|++++++|+|. +.++|...++..-......+....-+..++ ....+ .-.+.+++.++++++|
T Consensus 128 ~~l~e~~RvLkp~--~~ile~~~p~~~~~~~~~~~y~~~~~P~~~-~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~ 204 (226)
T PRK05785 128 KVIAEFTRVSRKQ--VGFIAMGKPDNVIKRKYLSFYLRYIMPYIA-CLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA 204 (226)
T ss_pred HHHHHHHHHhcCc--eEEEEeCCCCcHHHHHHHHHHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 8999999999993 445565444331000000000000111111 11111 1248899999999984
Q ss_pred CCceEEEEccCC
Q 043063 290 FPHLRLYRVLDC 301 (301)
Q Consensus 290 f~~~~~~~~~~~ 301 (301)
..++..++..|
T Consensus 205 -~~~~~~~~~~G 215 (226)
T PRK05785 205 -DIKVYEERGLG 215 (226)
T ss_pred -CceEEEEcccc
Confidence 77888887765
No 48
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.95 E-value=4.5e-09 Score=91.31 Aligned_cols=127 Identities=22% Similarity=0.224 Sum_probs=85.2
Q ss_pred cceEEeecCCce--------------eeeeh-hH------HHhhCC-CCCceeEEeCCCCccCCc---ccEeeHhhhhcc
Q 043063 161 VKRLVDVGGSAG--------------INFDL-PE------VVAEAP-SIPGVTHIGGDMFKSIPA---ADAIFMKWVLTT 215 (301)
Q Consensus 161 ~~~vlDvGgG~g--------------~~~Dl-p~------v~~~a~-~~~ri~~~~gd~~~~~p~---~D~v~~~~vlh~ 215 (301)
.++|||||||+| +++|- +. .++..- ...++.+++ ...+++|. .|+|++..||+|
T Consensus 116 gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp-lgvE~Lp~~~~FDtVF~MGVLYH 194 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP-LGVEDLPNLGAFDTVFSMGVLYH 194 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcC-cchhhccccCCcCEEEEeeehhc
Confidence 479999999996 56775 22 222222 123344443 22233443 499999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCC--hHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCce
Q 043063 216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNE--SQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHL 293 (301)
Q Consensus 216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~--~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~ 293 (301)
..+. ...|+.+++.|+|||.|++-..+++.+.+. -|..++...-+ --...|...+..|++.+||+.+
T Consensus 195 rr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~n---------v~FiPs~~~L~~wl~r~gF~~v 263 (315)
T PF08003_consen 195 RRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRN---------VWFIPSVAALKNWLERAGFKDV 263 (315)
T ss_pred cCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCc---------eEEeCCHHHHHHHHHHcCCceE
Confidence 8887 589999999999999998877777654221 12111111111 1245699999999999999999
Q ss_pred EEEEcc
Q 043063 294 RLYRVL 299 (301)
Q Consensus 294 ~~~~~~ 299 (301)
++.++.
T Consensus 264 ~~v~~~ 269 (315)
T PF08003_consen 264 RCVDVS 269 (315)
T ss_pred EEecCc
Confidence 998764
No 49
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.94 E-value=7.7e-10 Score=80.62 Aligned_cols=74 Identities=27% Similarity=0.504 Sum_probs=58.7
Q ss_pred EeecCCce--------------eeeeh-hHHHhhCCC---CCceeEEeCCCCcc-CCc--ccEeeHhhhhccCChHHHHH
Q 043063 165 VDVGGSAG--------------INFDL-PEVVAEAPS---IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDECKL 223 (301)
Q Consensus 165 lDvGgG~g--------------~~~Dl-p~v~~~a~~---~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~~~~ 223 (301)
||||||+| +++|. +..++.+++ ..++++..+|+.+. +|. .|+|++..++|++++ ..+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~--~~~ 78 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED--PEA 78 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH--HHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccC--HHH
Confidence 79999996 56787 666666654 46777999998765 664 499999999999944 469
Q ss_pred HHHHHHHhCCCCCEEEE
Q 043063 224 IMENCYKAIPAGGKLIA 240 (301)
Q Consensus 224 iL~~~~~aL~pgg~lli 240 (301)
++++++++|+|||+++|
T Consensus 79 ~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 79 ALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHcCcCeEEeC
Confidence 99999999999999986
No 50
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.93 E-value=9.1e-10 Score=89.88 Aligned_cols=86 Identities=27% Similarity=0.436 Sum_probs=67.4
Q ss_pred CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC----CCceeEEeCCCCccCCc--ccEeeHhhhhccCC
Q 043063 158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKSIPA--ADAIFMKWVLTTWT 217 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~~p~--~D~v~~~~vlh~~~ 217 (301)
-....+++|+|||.| ++.|. |..++.|++ .++|+|+..|+-+..|. .|+|+++.++|+++
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYYL~ 120 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYYLD 120 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGGSS
T ss_pred ccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHcCC
Confidence 445689999999996 57898 778877764 48999999999776676 49999999999998
Q ss_pred h-HHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 218 D-DECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 218 d-~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
+ ++...+++++.++|+|||.|++...
T Consensus 121 ~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 121 DAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 6 6788999999999999999999886
No 51
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.92 E-value=6.6e-10 Score=82.21 Aligned_cols=72 Identities=25% Similarity=0.428 Sum_probs=45.8
Q ss_pred EeecCCce---------------eeeeh-hHHHhhCCCC---------CceeEEeCCCCccCC--cccEeeHhhhhccCC
Q 043063 165 VDVGGSAG---------------INFDL-PEVVAEAPSI---------PGVTHIGGDMFKSIP--AADAIFMKWVLTTWT 217 (301)
Q Consensus 165 lDvGgG~g---------------~~~Dl-p~v~~~a~~~---------~ri~~~~gd~~~~~p--~~D~v~~~~vlh~~~ 217 (301)
||||||+| +++|. |.+++.+++. .++++...|.+...+ ..|+|++..+||+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999996 57797 8888777752 245555555544433 359999999999995
Q ss_pred hHHHHHHHHHHHHhCCCCCEE
Q 043063 218 DDECKLIMENCYKAIPAGGKL 238 (301)
Q Consensus 218 d~~~~~iL~~~~~aL~pgg~l 238 (301)
+ ...+|+++++.|+|||+|
T Consensus 81 ~--~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 D--IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-TSS-EE
T ss_pred h--HHHHHHHHHHHcCCCCCC
Confidence 5 459999999999999986
No 52
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.91 E-value=3.2e-09 Score=94.65 Aligned_cols=81 Identities=19% Similarity=0.343 Sum_probs=63.1
Q ss_pred CcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc--CCc------ccEe
Q 043063 160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS--IPA------ADAI 207 (301)
Q Consensus 160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~--~p~------~D~v 207 (301)
+..+|||+|||+| +.+|+ +++++.+.+ ..+|.++.+|+.+. ++. ..++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 4578999999996 35788 667666543 13567789999864 332 1467
Q ss_pred eHhhhhccCChHHHHHHHHHHHHhCCCCCEEEE
Q 043063 208 FMKWVLTTWTDDECKLIMENCYKAIPAGGKLIA 240 (301)
Q Consensus 208 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli 240 (301)
++...+|+++++++..+|++++++|+|||+++|
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 777899999999999999999999999999886
No 53
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.91 E-value=1.9e-08 Score=84.96 Aligned_cols=118 Identities=12% Similarity=0.097 Sum_probs=84.4
Q ss_pred CCcceEEeecCCce-------------eeeeh-hHHHhhCC------------------CCCceeEEeCCCCccCC----
Q 043063 159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAP------------------SIPGVTHIGGDMFKSIP---- 202 (301)
Q Consensus 159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~------------------~~~ri~~~~gd~~~~~p---- 202 (301)
....++||+|||.| +++|. |..++.+. +..+|+++.+|+++..+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 34579999999995 67898 66666531 13579999999987532
Q ss_pred cccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHH
Q 043063 203 AADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFK 282 (301)
Q Consensus 203 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~ 282 (301)
..|+|+-+.++|+++.+...+.++++.++|+|||++++.-...+.....+|. ...+.+|+.
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp-------------------~~~~~~eL~ 173 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPP-------------------FSVSPAEVE 173 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcC-------------------CCCCHHHHH
Confidence 2499999999999999988999999999999999877765544322111111 124788888
Q ss_pred HHHHhCCCCceEEE
Q 043063 283 QLGFSAGFPHLRLY 296 (301)
Q Consensus 283 ~~l~~aGf~~~~~~ 296 (301)
++|+. +|.+..+.
T Consensus 174 ~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 174 ALYGG-HYEIELLE 186 (213)
T ss_pred HHhcC-CceEEEEe
Confidence 88864 35554444
No 54
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.89 E-value=1.2e-08 Score=87.52 Aligned_cols=120 Identities=21% Similarity=0.189 Sum_probs=85.2
Q ss_pred cceEEeecCCce---------------eeeeh-hHHHhhCCC--CCceeEEeCCCCcc-CCc--ccEeeHhhhhccCChH
Q 043063 161 VKRLVDVGGSAG---------------INFDL-PEVVAEAPS--IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDD 219 (301)
Q Consensus 161 ~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~--~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~ 219 (301)
..+|||||||+| +++|. +.+++.+++ .++++++.+|+.+. ++. .|+|++.+++|+.++.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~ 114 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDL 114 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccCH
Confidence 478999999996 56787 666655543 25799999998764 443 5999999999988775
Q ss_pred HHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEE
Q 043063 220 ECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLY 296 (301)
Q Consensus 220 ~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~ 296 (301)
.++|++++++|+|||++++.+.....- ........ .......+.++|.+++..+ |+...+.
T Consensus 115 --~~~l~~~~~~L~~~G~l~~~~~~~~~~------~~~~~~~~-------~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 115 --SQALSELARVLKPGGLLAFSTFGPGTL------HELRQSFG-------QHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred --HHHHHHHHHHcCCCcEEEEEeCCccCH------HHHHHHHH-------HhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 489999999999999999886533211 00000000 1123445889999999988 8876654
No 55
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.88 E-value=5.9e-09 Score=87.59 Aligned_cols=87 Identities=18% Similarity=0.358 Sum_probs=71.7
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-CCceeEEeCCCCccCCc--ccEeeHhhhhccCChH
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKSIPA--ADAIFMKWVLTTWTDD 219 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~~p~--~D~v~~~~vlh~~~d~ 219 (301)
.+..+|||||||+| +++|+ |++++.|++ ..++++..+|+.++++. .|+|++..+||+++++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p~ 121 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINPD 121 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCHH
Confidence 35678999999996 46787 888888876 46789999998876554 4999999999999988
Q ss_pred HHHHHHHHHHHhCCCCCEEEEeccccCC
Q 043063 220 ECKLIMENCYKAIPAGGKLIACEPVLPD 247 (301)
Q Consensus 220 ~~~~iL~~~~~aL~pgg~lli~e~~~~~ 247 (301)
+..++++++++.+ ++.++|.|...+.
T Consensus 122 ~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 122 NLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 8899999999986 5688888876543
No 56
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.86 E-value=4.6e-09 Score=88.11 Aligned_cols=132 Identities=18% Similarity=0.153 Sum_probs=89.2
Q ss_pred CcceEEeecCCce-------------eeeeh-hHHHhhCCCC---Cc--eeEEeCCCCcc-CC--cccEeeHhhhhccCC
Q 043063 160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI---PG--VTHIGGDMFKS-IP--AADAIFMKWVLTTWT 217 (301)
Q Consensus 160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~---~r--i~~~~gd~~~~-~p--~~D~v~~~~vlh~~~ 217 (301)
...+|||||||.| +++|. +..++.|+.. +. |++.+....+- .. ..|+|+|..||+|.+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 3579999999996 56787 7777777642 22 33555444332 22 359999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccH-HHHhhhhcc-----ccccCHHHHHHHHHhCCCC
Q 043063 218 DDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDI-FVMTIYRAK-----GKHMTEQEFKQLGFSAGFP 291 (301)
Q Consensus 218 d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~-~m~~~~~~~-----g~~rt~~e~~~~l~~aGf~ 291 (301)
|++ .+++.+.+.++|||.+++........ ......+.. ..+. ..+. .+...++|+..++.++||.
T Consensus 139 dp~--~~~~~c~~lvkP~G~lf~STinrt~k------a~~~~i~~ae~vl~-~vP~gTH~~~k~irp~El~~~~~~~~~~ 209 (243)
T COG2227 139 DPE--SFLRACAKLVKPGGILFLSTINRTLK------AYLLAIIGAEYVLR-IVPKGTHDYRKFIKPAELIRWLLGANLK 209 (243)
T ss_pred CHH--HHHHHHHHHcCCCcEEEEeccccCHH------HHHHHHHHHHHHHH-hcCCcchhHHHhcCHHHHHHhcccCCce
Confidence 986 69999999999999998877643211 111111111 0110 0112 3446799999999999999
Q ss_pred ceEEEEccC
Q 043063 292 HLRLYRVLD 300 (301)
Q Consensus 292 ~~~~~~~~~ 300 (301)
......+.+
T Consensus 210 ~~~~~g~~y 218 (243)
T COG2227 210 IIDRKGLTY 218 (243)
T ss_pred EEeecceEe
Confidence 988877655
No 57
>PLN03075 nicotianamine synthase; Provisional
Probab=98.86 E-value=4.4e-09 Score=92.16 Aligned_cols=82 Identities=20% Similarity=0.238 Sum_probs=67.6
Q ss_pred CcceEEeecCCce-----------------eeeeh-hHHHhhCCC--------CCceeEEeCCCCccCC---cccEeeHh
Q 043063 160 GVKRLVDVGGSAG-----------------INFDL-PEVVAEAPS--------IPGVTHIGGDMFKSIP---AADAIFMK 210 (301)
Q Consensus 160 ~~~~vlDvGgG~g-----------------~~~Dl-p~v~~~a~~--------~~ri~~~~gd~~~~~p---~~D~v~~~ 210 (301)
+.++|+|||||.| +++|. |+.++.|++ .+||+|..+|..+..+ ..|+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 6789999999952 57887 777776653 3689999999987532 35999999
Q ss_pred hhhccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063 211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
++|+|+.++-.++|+++++.|+|||.+++--
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9999976666899999999999999988765
No 58
>PRK04266 fibrillarin; Provisional
Probab=98.86 E-value=2.9e-08 Score=84.60 Aligned_cols=118 Identities=17% Similarity=0.221 Sum_probs=77.3
Q ss_pred CCCCCCcceEEeecCCce---------------eeeeh-hHHHh----hCCCCCceeEEeCCCCcc-----CCc-ccEee
Q 043063 155 YDGFKGVKRLVDVGGSAG---------------INFDL-PEVVA----EAPSIPGVTHIGGDMFKS-----IPA-ADAIF 208 (301)
Q Consensus 155 ~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~----~a~~~~ri~~~~gd~~~~-----~p~-~D~v~ 208 (301)
++ .++..+|||+|||+| +.+|. +.+++ .+++..+|.++.+|...+ ++. .|+++
T Consensus 68 l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~ 146 (226)
T PRK04266 68 FP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY 146 (226)
T ss_pred CC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE
Confidence 43 667789999999995 24587 65544 444457899999998653 233 48876
Q ss_pred HhhhhccCChHH-HHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHh
Q 043063 209 MKWVLTTWTDDE-CKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFS 287 (301)
Q Consensus 209 ~~~vlh~~~d~~-~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~ 287 (301)
|+.++.+ ...+|+++++.|+|||+++|.=....-+....+ . +..++..+++++
T Consensus 147 -----~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~--------------------~-~~~~~~~~~l~~ 200 (226)
T PRK04266 147 -----QDVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDP--------------------K-EIFKEEIRKLEE 200 (226)
T ss_pred -----ECCCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCH--------------------H-HHHHHHHHHHHH
Confidence 5555432 346789999999999999994111111100000 0 112344599999
Q ss_pred CCCCceEEEEcc
Q 043063 288 AGFPHLRLYRVL 299 (301)
Q Consensus 288 aGf~~~~~~~~~ 299 (301)
+||+.++...+.
T Consensus 201 aGF~~i~~~~l~ 212 (226)
T PRK04266 201 GGFEILEVVDLE 212 (226)
T ss_pred cCCeEEEEEcCC
Confidence 999999988764
No 59
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.85 E-value=1.5e-08 Score=86.89 Aligned_cols=136 Identities=16% Similarity=0.058 Sum_probs=86.3
Q ss_pred CcceEEeecCCce-------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCccC--C-c-ccEeeHhhhhccC
Q 043063 160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKSI--P-A-ADAIFMKWVLTTW 216 (301)
Q Consensus 160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~--p-~-~D~v~~~~vlh~~ 216 (301)
+..+|||||||+| +++|. +..++.+++ ..++++...|+.+.. + . .|+|++.+++++.
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~ 127 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV 127 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence 4678999999996 45676 555555442 235778777765431 2 2 4999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhh-hhccHHHHh-hhhccccccCHHHHHHHHHhCCCCceE
Q 043063 217 TDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRAL-LEGDIFVMT-IYRAKGKHMTEQEFKQLGFSAGFPHLR 294 (301)
Q Consensus 217 ~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~-~~~d~~m~~-~~~~~g~~rt~~e~~~~l~~aGf~~~~ 294 (301)
++. ..+|+.+.+.|+|||++++...... . . ....... ...-..... .........+.++|.++++++||++++
T Consensus 128 ~~~--~~~l~~~~~~L~~gG~l~v~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~ 202 (233)
T PRK05134 128 PDP--ASFVRACAKLVKPGGLVFFSTLNRN-L-K-SYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQD 202 (233)
T ss_pred CCH--HHHHHHHHHHcCCCcEEEEEecCCC-h-H-HHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEee
Confidence 875 4789999999999999988754211 0 0 0000000 000000000 000012345889999999999999998
Q ss_pred EEEccC
Q 043063 295 LYRVLD 300 (301)
Q Consensus 295 ~~~~~~ 300 (301)
...+.+
T Consensus 203 ~~~~~~ 208 (233)
T PRK05134 203 ITGLHY 208 (233)
T ss_pred eeeEEe
Confidence 876543
No 60
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.84 E-value=1.7e-08 Score=83.72 Aligned_cols=110 Identities=20% Similarity=0.284 Sum_probs=78.1
Q ss_pred hcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc-ccEeeH
Q 043063 153 DGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA-ADAIFM 209 (301)
Q Consensus 153 ~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~-~D~v~~ 209 (301)
..++ .....+|||||||+| +.+|. |.+++.+++ ..+++++.+|....++. .|+|++
T Consensus 25 ~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~ 103 (187)
T PRK08287 25 SKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFI 103 (187)
T ss_pred HhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEE
Confidence 3443 556789999999995 46788 777776653 25799999998644554 599998
Q ss_pred hhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCC
Q 043063 210 KWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAG 289 (301)
Q Consensus 210 ~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aG 289 (301)
....++ ...+++.+++.|+|||++++.....+ +.+++.+++++.|
T Consensus 104 ~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~~~------------------------------~~~~~~~~l~~~g 148 (187)
T PRK08287 104 GGSGGN-----LTAIIDWSLAHLHPGGRLVLTFILLE------------------------------NLHSALAHLEKCG 148 (187)
T ss_pred CCCccC-----HHHHHHHHHHhcCCCeEEEEEEecHh------------------------------hHHHHHHHHHHCC
Confidence 765443 24689999999999999987543111 3456667888888
Q ss_pred CCceEEEEc
Q 043063 290 FPHLRLYRV 298 (301)
Q Consensus 290 f~~~~~~~~ 298 (301)
|+.++++.+
T Consensus 149 ~~~~~~~~~ 157 (187)
T PRK08287 149 VSELDCVQL 157 (187)
T ss_pred CCcceEEEE
Confidence 877765543
No 61
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.84 E-value=1.1e-08 Score=91.14 Aligned_cols=129 Identities=16% Similarity=0.072 Sum_probs=80.1
Q ss_pred cceEEeecCCce-------------eeeeh-hHHHhhCCCC-----------CceeEEeCCCCccCCcccEeeHhhhhcc
Q 043063 161 VKRLVDVGGSAG-------------INFDL-PEVVAEAPSI-----------PGVTHIGGDMFKSIPAADAIFMKWVLTT 215 (301)
Q Consensus 161 ~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~-----------~ri~~~~gd~~~~~p~~D~v~~~~vlh~ 215 (301)
..+|||||||+| +++|. +.+++.+++. .+++|..+|+.+.-...|+|++..++||
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL~H 224 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVLIH 224 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEEEe
Confidence 579999999996 57798 7777666531 3578888887432223599999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHh-hhhccccccCHHHHHHHHHhCCCCceE
Q 043063 216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMT-IYRAKGKHMTEQEFKQLGFSAGFPHLR 294 (301)
Q Consensus 216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~-~~~~~g~~rt~~e~~~~l~~aGf~~~~ 294 (301)
++++....+++.+.+ +.+++ ++|.. .+... .........-...+ .........+.++++++|+++||++.+
T Consensus 225 ~p~~~~~~ll~~l~~-l~~g~-liIs~--~p~~~----~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~ 296 (315)
T PLN02585 225 YPQDKADGMIAHLAS-LAEKR-LIISF--APKTL----YYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVAR 296 (315)
T ss_pred cCHHHHHHHHHHHHh-hcCCE-EEEEe--CCcch----HHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEE
Confidence 999887788888875 45554 44422 12110 00000000000000 000012234899999999999999876
Q ss_pred EEE
Q 043063 295 LYR 297 (301)
Q Consensus 295 ~~~ 297 (301)
..-
T Consensus 297 ~~~ 299 (315)
T PLN02585 297 REM 299 (315)
T ss_pred EEE
Confidence 543
No 62
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.78 E-value=4.7e-08 Score=82.88 Aligned_cols=119 Identities=16% Similarity=0.163 Sum_probs=83.9
Q ss_pred CCcceEEeecCCce-------------eeeeh-hHHHhhCC------------------CCCceeEEeCCCCccCC----
Q 043063 159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAP------------------SIPGVTHIGGDMFKSIP---- 202 (301)
Q Consensus 159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~------------------~~~ri~~~~gd~~~~~p---- 202 (301)
....+|||+|||.| +.+|. |..++.+. ...+|++..+|+++..+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 34579999999995 67898 66565431 13679999999997632
Q ss_pred cccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHH
Q 043063 203 AADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFK 282 (301)
Q Consensus 203 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~ 282 (301)
..|+|+-+.++|+++.+...+.++++.++|+|||++++.....+.....+|. ...|.+|+.
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp-------------------~~~~~~el~ 176 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPP-------------------FSVSDEEVE 176 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCC-------------------CCCCHHHHH
Confidence 2499999999999999999999999999999999755544333322111111 123889999
Q ss_pred HHHHhCCCCceEEEE
Q 043063 283 QLGFSAGFPHLRLYR 297 (301)
Q Consensus 283 ~~l~~aGf~~~~~~~ 297 (301)
++|+. +|.+..+..
T Consensus 177 ~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 177 ALYAG-CFEIELLER 190 (218)
T ss_pred HHhcC-CceEEEeee
Confidence 98864 255555443
No 63
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.75 E-value=3.5e-08 Score=84.07 Aligned_cols=132 Identities=17% Similarity=0.060 Sum_probs=86.8
Q ss_pred CcceEEeecCCce-------------eeeeh-hHHHhhCCC-----C-CceeEEeCCCCcc---CCc-ccEeeHhhhhcc
Q 043063 160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----I-PGVTHIGGDMFKS---IPA-ADAIFMKWVLTT 215 (301)
Q Consensus 160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----~-~ri~~~~gd~~~~---~p~-~D~v~~~~vlh~ 215 (301)
...+|||+|||+| +++|. +.+++.+++ . .++++..+|+.+. .+. .|+|++.+++|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 3578999999996 36677 566665543 1 2688888887543 123 599999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhc-----cccccCHHHHHHHHHhCCC
Q 043063 216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRA-----KGKHMTEQEFKQLGFSAGF 290 (301)
Q Consensus 216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~-----~g~~rt~~e~~~~l~~aGf 290 (301)
..+.. .+|+++++.|+|||.+++.....+.. ..... ..+..+..-... .....+..+|.++++++||
T Consensus 125 ~~~~~--~~l~~~~~~L~~gG~l~i~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~ 196 (224)
T TIGR01983 125 VPDPQ--AFIRACAQLLKPGGILFFSTINRTPK---SYLLA---IVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGL 196 (224)
T ss_pred CCCHH--HHHHHHHHhcCCCcEEEEEecCCCch---HHHHH---HHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCC
Confidence 98764 89999999999999988876532111 11100 000000000000 1123478999999999999
Q ss_pred CceEEEEcc
Q 043063 291 PHLRLYRVL 299 (301)
Q Consensus 291 ~~~~~~~~~ 299 (301)
+++++....
T Consensus 197 ~i~~~~~~~ 205 (224)
T TIGR01983 197 RVKDVKGLV 205 (224)
T ss_pred eeeeeeeEE
Confidence 998877543
No 64
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.75 E-value=2.9e-09 Score=79.15 Aligned_cols=73 Identities=22% Similarity=0.399 Sum_probs=57.1
Q ss_pred EEeecCCce------------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc--ccEeeHh-hhhcc
Q 043063 164 LVDVGGSAG------------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA--ADAIFMK-WVLTT 215 (301)
Q Consensus 164 vlDvGgG~g------------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~--~D~v~~~-~vlh~ 215 (301)
|||+|||+| +++|+ +++++.+++ ..+++++.+|+.+- ++. .|+|+++ .++|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 799999995 45687 777777654 24899999999763 322 5999995 55999
Q ss_pred CChHHHHHHHHHHHHhCCCCC
Q 043063 216 WTDDECKLIMENCYKAIPAGG 236 (301)
Q Consensus 216 ~~d~~~~~iL~~~~~aL~pgg 236 (301)
+++++..++|+++++.|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999987
No 65
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.73 E-value=1.3e-07 Score=78.29 Aligned_cols=93 Identities=15% Similarity=0.072 Sum_probs=74.7
Q ss_pred ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHH
Q 043063 204 ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQ 283 (301)
Q Consensus 204 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~ 283 (301)
.|+|++.+++|-.+-+.+..+++.+.++|+|||.|++.-++..++.-.++. -..+|..... .......|+.+++.+
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~S---N~~FD~sLr~-rdp~~GiRD~e~v~~ 178 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSES---NAAFDASLRS-RDPEWGIRDIEDVEA 178 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcH---HHHHHHHHhc-CCCCcCccCHHHHHH
Confidence 399999999999999999999999999999999999999988765211111 1234544443 234577899999999
Q ss_pred HHHhCCCCceEEEEccC
Q 043063 284 LGFSAGFPHLRLYRVLD 300 (301)
Q Consensus 284 ~l~~aGf~~~~~~~~~~ 300 (301)
+.+++||+..++++++-
T Consensus 179 lA~~~GL~l~~~~~MPA 195 (204)
T PF06080_consen 179 LAAAHGLELEEDIDMPA 195 (204)
T ss_pred HHHHCCCccCcccccCC
Confidence 99999999999988874
No 66
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.71 E-value=8.6e-08 Score=78.88 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=78.2
Q ss_pred CcceEEeecCCce-------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCccCC-cccEeeHhhhhccCChH
Q 043063 160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKSIP-AADAIFMKWVLTTWTDD 219 (301)
Q Consensus 160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p-~~D~v~~~~vlh~~~d~ 219 (301)
...+|||+|||+| +.+|+ |.+++.+++ .-+++++.+|.++..+ ..|+|++...+|..++.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~~~ 98 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLEDD 98 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCcch
Confidence 3468999999996 45787 777776654 2368889999876543 36999998887766542
Q ss_pred H-------------------HHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHH
Q 043063 220 E-------------------CKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQE 280 (301)
Q Consensus 220 ~-------------------~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e 280 (301)
. ..++|+++.+.|+|||++++++.... ...+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~------------------------------~~~~ 148 (179)
T TIGR00537 99 LRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN------------------------------GEPD 148 (179)
T ss_pred hcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC------------------------------ChHH
Confidence 1 35789999999999999998875222 2455
Q ss_pred HHHHHHhCCCCceEEEE
Q 043063 281 FKQLGFSAGFPHLRLYR 297 (301)
Q Consensus 281 ~~~~l~~aGf~~~~~~~ 297 (301)
+.+++++.||....+..
T Consensus 149 ~~~~l~~~gf~~~~~~~ 165 (179)
T TIGR00537 149 TFDKLDERGFRYEIVAE 165 (179)
T ss_pred HHHHHHhCCCeEEEEEE
Confidence 66777778887766543
No 67
>PTZ00146 fibrillarin; Provisional
Probab=98.64 E-value=3.5e-07 Score=79.99 Aligned_cols=117 Identities=18% Similarity=0.197 Sum_probs=76.4
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hH----HHhhCCCCCceeEEeCCCCccC------CcccEeeHh
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PE----VVAEAPSIPGVTHIGGDMFKSI------PAADAIFMK 210 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~----v~~~a~~~~ri~~~~gd~~~~~------p~~D~v~~~ 210 (301)
+++..+|||+|||+| +.+|. |. +++.+.+..+|.++.+|+..+. +..|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 667789999999995 23576 33 5566666688999999986541 225998776
Q ss_pred hhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCC
Q 043063 211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF 290 (301)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf 290 (301)
.. .+| +...++.++++.|+|||+++|.-....-+....|. ++-.+|. ++|+++||
T Consensus 210 va---~pd-q~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe--------------------~~f~~ev-~~L~~~GF 264 (293)
T PTZ00146 210 VA---QPD-QARIVALNAQYFLKNGGHFIISIKANCIDSTAKPE--------------------VVFASEV-QKLKKEGL 264 (293)
T ss_pred CC---Ccc-hHHHHHHHHHHhccCCCEEEEEEeccccccCCCHH--------------------HHHHHHH-HHHHHcCC
Confidence 53 233 34566678999999999999832211111011110 0112445 78899999
Q ss_pred CceEEEEcc
Q 043063 291 PHLRLYRVL 299 (301)
Q Consensus 291 ~~~~~~~~~ 299 (301)
+.++.+.+.
T Consensus 265 ~~~e~v~L~ 273 (293)
T PTZ00146 265 KPKEQLTLE 273 (293)
T ss_pred ceEEEEecC
Confidence 999888764
No 68
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.62 E-value=3.8e-08 Score=84.59 Aligned_cols=125 Identities=18% Similarity=0.280 Sum_probs=75.8
Q ss_pred CcceEEeecCCc------------------eeeeeh-hHHHhhCCC----CC--ceeEEeCCCCcc---CC--c--c--c
Q 043063 160 GVKRLVDVGGSA------------------GINFDL-PEVVAEAPS----IP--GVTHIGGDMFKS---IP--A--A--D 205 (301)
Q Consensus 160 ~~~~vlDvGgG~------------------g~~~Dl-p~v~~~a~~----~~--ri~~~~gd~~~~---~p--~--~--D 205 (301)
+.+.+||||||. .+-.|. |-++++++. .+ +..++.+|+.++ +. . . |
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 678999999999 133487 888888764 23 489999999976 22 2 1 3
Q ss_pred -----EeeHhhhhccCCh-HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHH
Q 043063 206 -----AIFMKWVLTTWTD-DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQ 279 (301)
Q Consensus 206 -----~v~~~~vlh~~~d-~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~ 279 (301)
.+++..+||+.+| ++...++++++++|.||+.|.|...+.+..+ ... ....++.-.+ ......||.+
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p--~~~---~~~~~~~~~~--~~~~~~Rs~~ 220 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP--ERA---EALEAVYAQA--GSPGRPRSRE 220 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH--HHH---HHHHHHHHHC--CS----B-HH
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH--HHH---HHHHHHHHcC--CCCceecCHH
Confidence 8999999999988 7789999999999999999999999776432 111 1122222222 3457789999
Q ss_pred HHHHHHHhCCCCce
Q 043063 280 EFKQLGFSAGFPHL 293 (301)
Q Consensus 280 e~~~~l~~aGf~~~ 293 (301)
|+.++|. ||..+
T Consensus 221 ei~~~f~--g~elv 232 (267)
T PF04672_consen 221 EIAAFFD--GLELV 232 (267)
T ss_dssp HHHHCCT--TSEE-
T ss_pred HHHHHcC--CCccC
Confidence 9999996 77654
No 69
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.60 E-value=6.4e-08 Score=79.80 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=67.6
Q ss_pred HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc-ccEe
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA-ADAI 207 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~-~D~v 207 (301)
..++.+++ .-...++||+|||.| +.+|. +..++.+.+ .-.|+....|+.+. ++. .|+|
T Consensus 20 s~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~I 98 (192)
T PF03848_consen 20 SEVLEAVP-LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDFI 98 (192)
T ss_dssp HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEEE
T ss_pred HHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCEE
Confidence 34455554 445689999999996 56787 444444321 23488899998765 554 5999
Q ss_pred eHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063 208 FMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVL 245 (301)
Q Consensus 208 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~ 245 (301)
+...|+++++.+...++++++.++++|||.+++...+.
T Consensus 99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~ 136 (192)
T PF03848_consen 99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFME 136 (192)
T ss_dssp EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB-
T ss_pred EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecc
Confidence 99899999999999999999999999999988865543
No 70
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.59 E-value=2.2e-07 Score=77.49 Aligned_cols=126 Identities=17% Similarity=0.165 Sum_probs=78.5
Q ss_pred CcceEEeecCCce--------------eeeeh-hHHHhhCCCCCceeEEeCCCCcc---CCc--ccEeeHhhhhccCChH
Q 043063 160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPSIPGVTHIGGDMFKS---IPA--ADAIFMKWVLTTWTDD 219 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~---~p~--~D~v~~~~vlh~~~d~ 219 (301)
...+|||||||+| +++|. ++.++.+++ .+++++.+|+.+. ++. .|+|++.+++|+++|.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~ 91 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNP 91 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCH
Confidence 4568999999996 45676 666666543 4688888888652 333 5999999999999875
Q ss_pred HHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhh----------ccHHHHhhhhccccccCHHHHHHHHHhCC
Q 043063 220 ECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLE----------GDIFVMTIYRAKGKHMTEQEFKQLGFSAG 289 (301)
Q Consensus 220 ~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~----------~d~~m~~~~~~~g~~rt~~e~~~~l~~aG 289 (301)
.++|+++.+.++ .+++.-+... . ........ +..... ........+.+++.++++++|
T Consensus 92 --~~~l~e~~r~~~---~~ii~~p~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~ll~~~G 159 (194)
T TIGR02081 92 --EEILDEMLRVGR---HAIVSFPNFG----Y-WRVRWSILTKGRMPVTGELPYDWY--NTPNIHFCTIADFEDLCGELN 159 (194)
T ss_pred --HHHHHHHHHhCC---eEEEEcCChh----H-HHHHHHHHhCCccccCCCCCcccc--CCCCcccCcHHHHHHHHHHCC
Confidence 478888887654 3333211100 0 00000000 000000 011123568999999999999
Q ss_pred CCceEEEEc
Q 043063 290 FPHLRLYRV 298 (301)
Q Consensus 290 f~~~~~~~~ 298 (301)
|++++..-.
T Consensus 160 f~v~~~~~~ 168 (194)
T TIGR02081 160 LRILDRAAF 168 (194)
T ss_pred CEEEEEEEe
Confidence 999887654
No 71
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.56 E-value=2e-07 Score=85.06 Aligned_cols=92 Identities=14% Similarity=0.202 Sum_probs=68.1
Q ss_pred HhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC---------CCceeEEeCCCCccCCc-
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS---------IPGVTHIGGDMFKSIPA- 203 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~---------~~ri~~~~gd~~~~~p~- 203 (301)
-+++.++ .....+|||+|||+| +.+|. +.+++.+++ ..+++++.+|.++.++.
T Consensus 219 llL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~ 297 (378)
T PRK15001 219 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 297 (378)
T ss_pred HHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCC
Confidence 3444554 333469999999996 46687 566666543 13789999999877543
Q ss_pred -ccEeeHhhhhc---cCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063 204 -ADAIFMKWVLT---TWTDDECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 204 -~D~v~~~~vlh---~~~d~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
.|+|+++--+| .+++..+.++++.+++.|+|||++++.-
T Consensus 298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 59999975555 3566677899999999999999998884
No 72
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.51 E-value=4.9e-07 Score=78.04 Aligned_cols=126 Identities=20% Similarity=0.281 Sum_probs=85.3
Q ss_pred CcceEEeecCCce-----------------eeeeh-hHHHhhCCC------C-CceeEEeCCCCcc------CCcccEee
Q 043063 160 GVKRLVDVGGSAG-----------------INFDL-PEVVAEAPS------I-PGVTHIGGDMFKS------IPAADAIF 208 (301)
Q Consensus 160 ~~~~vlDvGgG~g-----------------~~~Dl-p~v~~~a~~------~-~ri~~~~gd~~~~------~p~~D~v~ 208 (301)
...+||||.||+| .+.|. |..++.+++ . +-++|..+|.|+. .|..++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 5689999999996 23354 444554432 2 4459999999975 24459999
Q ss_pred HhhhhccCChHH-HHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhh----ccHHHHhhhhccccccCHHHHHH
Q 043063 209 MKWVLTTWTDDE-CKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLE----GDIFVMTIYRAKGKHMTEQEFKQ 283 (301)
Q Consensus 209 ~~~vlh~~~d~~-~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~----~d~~m~~~~~~~g~~rt~~e~~~ 283 (301)
.+.++..|+|.+ +...|+.+++++.|||.|+-.---.+.+.+ -++..+.+ .+..| +.||+.|+.+
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle--~IAr~LtsHr~g~~WvM--------RrRsq~EmD~ 284 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLE--MIARVLTSHRDGKAWVM--------RRRSQAEMDQ 284 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchH--HHHHHHhcccCCCceEE--------EecCHHHHHH
Confidence 999999999976 445799999999999988765532221111 01111111 11111 3479999999
Q ss_pred HHHhCCCCceEE
Q 043063 284 LGFSAGFPHLRL 295 (301)
Q Consensus 284 ~l~~aGf~~~~~ 295 (301)
+++++||...+.
T Consensus 285 Lv~~aGF~K~~q 296 (311)
T PF12147_consen 285 LVEAAGFEKIDQ 296 (311)
T ss_pred HHHHcCCchhhh
Confidence 999999986553
No 73
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.51 E-value=1.5e-07 Score=78.79 Aligned_cols=130 Identities=21% Similarity=0.275 Sum_probs=86.3
Q ss_pred ceEEeecCCce-ee----------------eeh-hHHHhhCCC-----CCceeEEeCCCCcc-C----Ccc--cEeeHhh
Q 043063 162 KRLVDVGGSAG-IN----------------FDL-PEVVAEAPS-----IPGVTHIGGDMFKS-I----PAA--DAIFMKW 211 (301)
Q Consensus 162 ~~vlDvGgG~g-~~----------------~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~----p~~--D~v~~~~ 211 (301)
.+|++||||.| ++ .|- |..++..++ ..|+.--..|+..+ . +.+ |++++..
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 38999999997 22 354 555555443 25666666676654 2 123 9999999
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhcccc---ccCHHHHHHHHHhC
Q 043063 212 VLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGK---HMTEQEFKQLGFSA 288 (301)
Q Consensus 212 vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~---~rt~~e~~~~l~~a 288 (301)
+|-..+++.....++++++.|+|||.|+..|...-+-.. -.......++-+.-+ ..+|- -.+.+++.++|.++
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dlaq--lRF~~~~~i~~nfYV--RgDGT~~YfF~~eeL~~~f~~a 228 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQ--LRFKKGQCISENFYV--RGDGTRAYFFTEEELDELFTKA 228 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHH--HhccCCceeecceEE--ccCCceeeeccHHHHHHHHHhc
Confidence 999999999999999999999999999999985542200 000001112211111 11222 24899999999999
Q ss_pred CCCceEE
Q 043063 289 GFPHLRL 295 (301)
Q Consensus 289 Gf~~~~~ 295 (301)
||..++.
T Consensus 229 gf~~~~~ 235 (264)
T KOG2361|consen 229 GFEEVQL 235 (264)
T ss_pred ccchhcc
Confidence 9987654
No 74
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.46 E-value=1.4e-06 Score=75.46 Aligned_cols=108 Identities=23% Similarity=0.337 Sum_probs=75.8
Q ss_pred cceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc--ccEeeHhh-----
Q 043063 161 VKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA--ADAIFMKW----- 211 (301)
Q Consensus 161 ~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~--~D~v~~~~----- 211 (301)
..+|||+|||+| +++|. +.+++.+++ .++++++.+|+++.++. .|+|++.-
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~~ 167 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIPE 167 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCch
Confidence 468999999996 46786 777766543 25799999999876543 59998732
Q ss_pred -hhccCChHH------------------HHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhcc
Q 043063 212 -VLTTWTDDE------------------CKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK 272 (301)
Q Consensus 212 -vlh~~~d~~------------------~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~ 272 (301)
.+|.+..+. ...+++++.+.|+|||++++... .
T Consensus 168 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~------~---------------------- 219 (251)
T TIGR03534 168 ADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG------Y---------------------- 219 (251)
T ss_pred hhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC------c----------------------
Confidence 222222211 24789999999999999887321 0
Q ss_pred ccccCHHHHHHHHHhCCCCceEEEEcc
Q 043063 273 GKHMTEQEFKQLGFSAGFPHLRLYRVL 299 (301)
Q Consensus 273 g~~rt~~e~~~~l~~aGf~~~~~~~~~ 299 (301)
...+++.++|+++||+.+++..-.
T Consensus 220 ---~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 220 ---DQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred ---cHHHHHHHHHHhCCCCceEEEeCC
Confidence 034678888999999988876643
No 75
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.45 E-value=2.8e-07 Score=75.89 Aligned_cols=76 Identities=21% Similarity=0.303 Sum_probs=56.0
Q ss_pred cceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC--cccEeeHhhhhccC
Q 043063 161 VKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP--AADAIFMKWVLTTW 216 (301)
Q Consensus 161 ~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p--~~D~v~~~~vlh~~ 216 (301)
..+|||||||+| +.+|. +.+++.+++ .++++++.+|+.+..+ ..|+|++.. +|++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~ 121 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL 121 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence 579999999996 46687 555554432 3579999999876322 359998866 5433
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063 217 TDDECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 217 ~d~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
..+++.+++.|+|||++++..
T Consensus 122 -----~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 122 -----NVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred -----HHHHHHHHHhcCCCCEEEEEc
Confidence 357888899999999999774
No 76
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=98.43 E-value=1.4e-08 Score=64.68 Aligned_cols=48 Identities=33% Similarity=0.378 Sum_probs=38.9
Q ss_pred CCCccccccccccccCC---CCCCHHHHHHHhCCCCCCCcccHHHHHHHHh
Q 043063 1 MEDNECRDGGKKGRLAN---TPLSASQILTRILPSGGGDAENLQRILRLLT 48 (301)
Q Consensus 1 ~~~~~a~~lglf~~L~~---g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~ 48 (301)
|-+++|+||||||.|+. ++.|++||+.++...+|.++..++|+||.|+
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 55789999999999973 5999999999998434546779999999985
No 77
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.40 E-value=6.8e-07 Score=75.23 Aligned_cols=83 Identities=18% Similarity=0.229 Sum_probs=60.4
Q ss_pred hhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc---
Q 043063 151 ILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA--- 203 (301)
Q Consensus 151 ~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~--- 203 (301)
+++.++ ..+..+|||||||+| +.+|. |++++.+++ .++++++.+|..+.++.
T Consensus 64 ~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (205)
T PRK13944 64 MCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAP 142 (205)
T ss_pred HHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCC
Confidence 444443 556689999999996 35677 777766553 24699999999865442
Q ss_pred ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063 204 ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 204 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
.|+|++...++++++ ++.+.|+|||+|++.-
T Consensus 143 fD~Ii~~~~~~~~~~--------~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 143 FDAIIVTAAASTIPS--------ALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccEEEEccCcchhhH--------HHHHhcCcCcEEEEEE
Confidence 599999988876653 4667899999998743
No 78
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.39 E-value=7.4e-07 Score=74.08 Aligned_cols=131 Identities=17% Similarity=0.197 Sum_probs=88.7
Q ss_pred HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCCC---CceeEEe-CCCCcc-CC-cccEee
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI---PGVTHIG-GDMFKS-IP-AADAIF 208 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~---~ri~~~~-gd~~~~-~p-~~D~v~ 208 (301)
.+++...+ ..+.+++||+|||+| +++|+ ..++++|.+. +....-. .+|..+ .+ ..|+|.
T Consensus 115 ~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~ 193 (287)
T COG4976 115 AEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIV 193 (287)
T ss_pred HHHHHhcc-CCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchh
Confidence 34444553 445899999999996 58898 6788888763 2211111 123332 23 369999
Q ss_pred HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCC--hHHhhhhhhccHHHHhhhhccccccCHHHHHHHHH
Q 043063 209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNE--SQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGF 286 (301)
Q Consensus 209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~--~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~ 286 (301)
...||-++.+-+ .++--+...|+|||.+...-...++..+. .|.. -.--++.-.+++++
T Consensus 194 AaDVl~YlG~Le--~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~-----------------RyAH~~~YVr~~l~ 254 (287)
T COG4976 194 AADVLPYLGALE--GLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQ-----------------RYAHSESYVRALLA 254 (287)
T ss_pred hhhHHHhhcchh--hHHHHHHHhcCCCceEEEEecccCCCCCeecchhh-----------------hhccchHHHHHHHH
Confidence 999999998854 88999999999999877665544433210 1110 01116778899999
Q ss_pred hCCCCceEEEEcc
Q 043063 287 SAGFPHLRLYRVL 299 (301)
Q Consensus 287 ~aGf~~~~~~~~~ 299 (301)
..||.++++.+++
T Consensus 255 ~~Gl~~i~~~~tt 267 (287)
T COG4976 255 ASGLEVIAIEDTT 267 (287)
T ss_pred hcCceEEEeeccc
Confidence 9999999998875
No 79
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.38 E-value=4e-07 Score=75.70 Aligned_cols=58 Identities=17% Similarity=0.256 Sum_probs=43.8
Q ss_pred CceeEEeCCCCcc-CC-c-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063 188 PGVTHIGGDMFKS-IP-A-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVL 245 (301)
Q Consensus 188 ~ri~~~~gd~~~~-~p-~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~ 245 (301)
.+|+|..+|..+. .+ . .|+|+|++||-+++++...+++++++++|+|||.|++-....
T Consensus 118 ~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE~ 178 (196)
T PF01739_consen 118 KMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSES 178 (196)
T ss_dssp TTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT--
T ss_pred CceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCcc
Confidence 6899999999983 22 2 499999999999999999999999999999999999887643
No 80
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.37 E-value=1.8e-06 Score=72.79 Aligned_cols=82 Identities=21% Similarity=0.379 Sum_probs=58.7
Q ss_pred CCCcceEEeecCCce----------------eeeehhHHHhhCCCCCceeEEeCCCCcc---------CCc--ccEeeHh
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDLPEVVAEAPSIPGVTHIGGDMFKS---------IPA--ADAIFMK 210 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~---------~p~--~D~v~~~ 210 (301)
+++..+|||||||+| +.+|+.++ ....+++++.+|+.+. ++. .|+|++.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~ 124 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSD 124 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecC
Confidence 456679999999996 34565332 1235799999999873 222 4999987
Q ss_pred hhhccCChHH---------HHHHHHHHHHhCCCCCEEEEecc
Q 043063 211 WVLTTWTDDE---------CKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 211 ~vlh~~~d~~---------~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
...|...+.. ...+|+.+++.|+|||++++...
T Consensus 125 ~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 125 MAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 7665543321 24689999999999999999764
No 81
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.37 E-value=1.1e-06 Score=79.43 Aligned_cols=92 Identities=16% Similarity=0.220 Sum_probs=66.1
Q ss_pred hhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCccCCc-ccEee
Q 043063 151 ILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKSIPA-ADAIF 208 (301)
Q Consensus 151 ~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p~-~D~v~ 208 (301)
++..++ .....+|||+|||+| +.+|. +.+++.+++ .-..+++.+|.++..+. .|+|+
T Consensus 188 Ll~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIv 266 (342)
T PRK09489 188 LLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMII 266 (342)
T ss_pred HHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEE
Confidence 344443 223458999999996 35677 566666653 12456788888776544 59999
Q ss_pred HhhhhccC---ChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 209 MKWVLTTW---TDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 209 ~~~vlh~~---~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
++-.+|+. +.+...++++++.+.|+|||+++|+-.
T Consensus 267 sNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 267 SNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 99989863 344567999999999999999887654
No 82
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.36 E-value=9.1e-07 Score=74.86 Aligned_cols=85 Identities=18% Similarity=0.269 Sum_probs=61.4
Q ss_pred HHhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC-c-
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP-A- 203 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p-~- 203 (301)
..++..++ ..+..+|||||||+| +.+|. |++++.+++ ..+|+++.+|.....+ .
T Consensus 66 ~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 66 AIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence 34455554 677789999999995 34676 777776654 2589999999886533 2
Q ss_pred -ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063 204 -ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 204 -~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
.|+|++....+..+ +.+.+.|+|||++++..
T Consensus 145 ~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 145 PYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 49999877665443 35667899999988853
No 83
>PRK14968 putative methyltransferase; Provisional
Probab=98.36 E-value=3.8e-06 Score=69.28 Aligned_cols=109 Identities=20% Similarity=0.297 Sum_probs=74.0
Q ss_pred CCcceEEeecCCce-------------eeeeh-hHHHhhCCC-------CCc-eeEEeCCCCccCCc--ccEeeHhhhhc
Q 043063 159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IPG-VTHIGGDMFKSIPA--ADAIFMKWVLT 214 (301)
Q Consensus 159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~r-i~~~~gd~~~~~p~--~D~v~~~~vlh 214 (301)
.+..++||+|||+| +.+|. |.+++.+++ .++ +.++.+|+.+.++. .|+|++...++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYL 101 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCcC
Confidence 34578999999996 46787 777766543 123 89999999877554 59998754332
Q ss_pred cC-----------------C--hHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccc
Q 043063 215 TW-----------------T--DDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKH 275 (301)
Q Consensus 215 ~~-----------------~--d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~ 275 (301)
.. . ......+++++.+.|+|||++++......
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~----------------------------- 152 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT----------------------------- 152 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC-----------------------------
Confidence 21 1 12245789999999999998887643110
Q ss_pred cCHHHHHHHHHhCCCCceEEEE
Q 043063 276 MTEQEFKQLGFSAGFPHLRLYR 297 (301)
Q Consensus 276 rt~~e~~~~l~~aGf~~~~~~~ 297 (301)
..+++.++++++||++..+..
T Consensus 153 -~~~~l~~~~~~~g~~~~~~~~ 173 (188)
T PRK14968 153 -GEDEVLEYLEKLGFEAEVVAE 173 (188)
T ss_pred -CHHHHHHHHHHCCCeeeeeee
Confidence 234567788888887766543
No 84
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.35 E-value=4.5e-06 Score=68.24 Aligned_cols=130 Identities=19% Similarity=0.226 Sum_probs=83.0
Q ss_pred CCCcceEEeecCCce--------------eeeeh-hHHHhhCCCCCceeEEeCCCCcc---CCc--ccEeeHhhhhccCC
Q 043063 158 FKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPSIPGVTHIGGDMFKS---IPA--ADAIFMKWVLTTWT 217 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~---~p~--~D~v~~~~vlh~~~ 217 (301)
.++..||||+|||.| .++|+ ++-+..+. ...+.++.+|+.+. +|. .|.|+++++|....
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence 346799999999995 45555 33232221 35788999999875 565 39999999999987
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEEeccccCCC--------CCChHHh--hhhhhccHHHHhhhhccccccCHHHHHHHHHh
Q 043063 218 DDECKLIMENCYKAIPAGGKLIACEPVLPDD--------SNESQRT--RALLEGDIFVMTIYRAKGKHMTEQEFKQLGFS 287 (301)
Q Consensus 218 d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~--------~~~~~~~--~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~ 287 (301)
+.+ ++|+++.+. |.+.+|.=+-...= .+.-|.. -...|+| +++=...|..++++++++
T Consensus 90 ~P~--~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYd-------TPNih~~Ti~DFe~lc~~ 157 (193)
T PF07021_consen 90 RPD--EVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYD-------TPNIHLCTIKDFEDLCRE 157 (193)
T ss_pred HHH--HHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccC-------CCCcccccHHHHHHHHHH
Confidence 764 778887655 65555543311000 0000000 0112233 444455699999999999
Q ss_pred CCCCceEEEEccC
Q 043063 288 AGFPHLRLYRVLD 300 (301)
Q Consensus 288 aGf~~~~~~~~~~ 300 (301)
.|+++.+-..+..
T Consensus 158 ~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 158 LGIRIEERVFLDG 170 (193)
T ss_pred CCCEEEEEEEEcC
Confidence 9999998877643
No 85
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.34 E-value=1e-06 Score=72.87 Aligned_cols=79 Identities=24% Similarity=0.328 Sum_probs=59.5
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CC-cccEeeHhhhhc
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IP-AADAIFMKWVLT 214 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p-~~D~v~~~~vlh 214 (301)
+...+|||||||+| +.+|. +.+++.+++ .++++++.+|+.+. .. ..|+|++..+
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-- 121 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-- 121 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc--
Confidence 34689999999996 46787 677766653 24599999998664 22 2599998652
Q ss_pred cCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 215 TWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 215 ~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
.+ ...+++++++.|+|||++++.+.
T Consensus 122 --~~--~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 122 --AS--LSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred --cC--HHHHHHHHHHhcCCCeEEEEEeC
Confidence 22 35899999999999999998864
No 86
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.33 E-value=1.2e-06 Score=66.97 Aligned_cols=79 Identities=18% Similarity=0.337 Sum_probs=57.6
Q ss_pred CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CC-cccEeeHhh
Q 043063 158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IP-AADAIFMKW 211 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p-~~D~v~~~~ 211 (301)
.....++||+|||+| +.+|. +..++.+++ ..+++++.+|.... .+ ..|+|++..
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence 455679999999995 46787 666665542 35789998887532 22 359998865
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063 212 VLTTWTDDECKLIMENCYKAIPAGGKLIAC 241 (301)
Q Consensus 212 vlh~~~d~~~~~iL~~~~~aL~pgg~lli~ 241 (301)
..+ ...++++.+++.|+|||++++.
T Consensus 97 ~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 97 SGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred cch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 432 3358999999999999998864
No 87
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.32 E-value=1e-06 Score=74.59 Aligned_cols=120 Identities=23% Similarity=0.284 Sum_probs=83.6
Q ss_pred CCCcceEEeecCCce-------------eeeeh-hHHHhhCC---C---------------CCceeEEeCCCCccCCc--
Q 043063 158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAP---S---------------IPGVTHIGGDMFKSIPA-- 203 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~---~---------------~~ri~~~~gd~~~~~p~-- 203 (301)
.....+||..|||.| +++|+ |..++.+. . .++|++..+|||+.-+.
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 445679999999994 68898 66665541 0 25799999999985332
Q ss_pred --ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHH
Q 043063 204 --ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEF 281 (301)
Q Consensus 204 --~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~ 281 (301)
.|+|+=...|+-++++...+..+++++.|+|||+++++-...+.....+|.. ..+.+|+
T Consensus 115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf-------------------~v~~~ev 175 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPF-------------------SVTEEEV 175 (218)
T ss_dssp HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS-----------------------HHHH
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCC-------------------CCCHHHH
Confidence 4999999999999999999999999999999999544443333221112221 1278899
Q ss_pred HHHHHhCCCCceEEEE
Q 043063 282 KQLGFSAGFPHLRLYR 297 (301)
Q Consensus 282 ~~~l~~aGf~~~~~~~ 297 (301)
.++|. .+|++..+..
T Consensus 176 ~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 176 RELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHT-TTEEEEEEEE
T ss_pred HHHhc-CCcEEEEEec
Confidence 99988 6787766553
No 88
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.29 E-value=4.3e-06 Score=72.56 Aligned_cols=99 Identities=23% Similarity=0.293 Sum_probs=66.8
Q ss_pred CCcceEEeecCCce--------------eeeeh-hHHHhhCCCC-------CceeEEeCCCCccCCcccEeeHhhhhccC
Q 043063 159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPAADAIFMKWVLTTW 216 (301)
Q Consensus 159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~-------~ri~~~~gd~~~~~p~~D~v~~~~vlh~~ 216 (301)
.+..+|||||||+| +++|. |.+++.+++. +++.+..+|. ..|+|++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~---- 188 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANIL---- 188 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCc----
Confidence 35689999999995 46787 7777766541 3344433332 3588886532
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEE
Q 043063 217 TDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLY 296 (301)
Q Consensus 217 ~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~ 296 (301)
.+....+++++.+.|+|||++++...... ..+++.+.+++.||++.++.
T Consensus 189 -~~~~~~l~~~~~~~LkpgG~lilsgi~~~------------------------------~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 189 -ANPLLELAPDLARLLKPGGRLILSGILEE------------------------------QADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred -HHHHHHHHHHHHHhcCCCcEEEEEECcHh------------------------------hHHHHHHHHHHCCCEEEEEE
Confidence 23346789999999999999998654221 24566777788888877665
Q ss_pred E
Q 043063 297 R 297 (301)
Q Consensus 297 ~ 297 (301)
.
T Consensus 238 ~ 238 (250)
T PRK00517 238 E 238 (250)
T ss_pred E
Confidence 4
No 89
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.27 E-value=1.4e-06 Score=71.04 Aligned_cols=84 Identities=23% Similarity=0.392 Sum_probs=61.9
Q ss_pred CcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC-c-ccEeeHhhhhcc
Q 043063 160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP-A-ADAIFMKWVLTT 215 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p-~-~D~v~~~~vlh~ 215 (301)
...++||+|||+| +.+|. +..++.+++ .+.++++..|.++..+ . .|+|++.--+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 4578999999996 35676 666666543 2339999999998866 3 599999988776
Q ss_pred CCh---HHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 216 WTD---DECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 216 ~~d---~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
-.+ +-..++++.+.+.|+|||+++++-.
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 554 3467999999999999999866443
No 90
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.23 E-value=2.9e-06 Score=71.89 Aligned_cols=83 Identities=20% Similarity=0.327 Sum_probs=59.5
Q ss_pred HhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC---c
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP---A 203 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p---~ 203 (301)
.++..++ .++..+|||||||+| +.+|. |++++.+++ .++++++.+|..+..+ .
T Consensus 68 ~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~ 146 (215)
T TIGR00080 68 MMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAP 146 (215)
T ss_pred HHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCC
Confidence 3444554 667789999999995 34575 777776653 2689999999976533 2
Q ss_pred ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063 204 ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIAC 241 (301)
Q Consensus 204 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~ 241 (301)
.|+|++....+. +.+.+.+.|+|||++++.
T Consensus 147 fD~Ii~~~~~~~--------~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 147 YDRIYVTAAGPK--------IPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCEEEEcCCccc--------ccHHHHHhcCcCcEEEEE
Confidence 599998765443 345577889999998875
No 91
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.22 E-value=9.3e-06 Score=71.36 Aligned_cols=108 Identities=25% Similarity=0.343 Sum_probs=72.3
Q ss_pred CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC--cccEeeHhh--
Q 043063 158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP--AADAIFMKW-- 211 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p--~~D~v~~~~-- 211 (301)
..+..+|||+|||+| +++|. +..++.+++ ..+++++.+|++++.+ ..|+|++.-
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 345678999999996 45686 666655543 3589999999987754 259988732
Q ss_pred ----hhccCCh------------------HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhh
Q 043063 212 ----VLTTWTD------------------DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIY 269 (301)
Q Consensus 212 ----vlh~~~d------------------~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~ 269 (301)
.++..++ +...++++++.+.|+|||++++. . . .
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e-~----g-~------------------- 240 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE-I----G-Y------------------- 240 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE-E----C-c-------------------
Confidence 1111111 12357899999999999998871 1 0 0
Q ss_pred hccccccCHHHHHHHHHhCCCCceEEE
Q 043063 270 RAKGKHMTEQEFKQLGFSAGFPHLRLY 296 (301)
Q Consensus 270 ~~~g~~rt~~e~~~~l~~aGf~~~~~~ 296 (301)
...+++.+++++.||+.+++.
T Consensus 241 ------~~~~~~~~~l~~~gf~~v~~~ 261 (275)
T PRK09328 241 ------DQGEAVRALLAAAGFADVETR 261 (275)
T ss_pred ------hHHHHHHHHHHhCCCceeEEe
Confidence 023457888888999866654
No 92
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.21 E-value=1.5e-06 Score=72.94 Aligned_cols=84 Identities=14% Similarity=0.213 Sum_probs=59.3
Q ss_pred CcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc----CCc--ccEeeHhh
Q 043063 160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS----IPA--ADAIFMKW 211 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~----~p~--~D~v~~~~ 211 (301)
...+|||||||+| +.+|. +++++.+++ .++++++.+|+.+. ++. .|+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 4578999999996 46787 777766543 36899999998322 333 49888765
Q ss_pred hhccCC------hHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 212 VLTTWT------DDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 212 vlh~~~------d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
..+... ......+|+++++.|+|||.+++...
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 432111 11135799999999999999998653
No 93
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.19 E-value=7e-06 Score=69.63 Aligned_cols=88 Identities=8% Similarity=-0.032 Sum_probs=70.9
Q ss_pred CCcceEEeecCCce-------------eeeeh-hHHHhhCC------------------CCCceeEEeCCCCccCC----
Q 043063 159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAP------------------SIPGVTHIGGDMFKSIP---- 202 (301)
Q Consensus 159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~------------------~~~ri~~~~gd~~~~~p---- 202 (301)
....+||+.|||.| +++|+ |..++.+. +..+|++..+|+|+.-+
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 34579999999994 68898 55555531 13589999999998622
Q ss_pred --cccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 203 --AADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 203 --~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
..|+|+=+.+|+.++++...+..+++.+.|+|||+++++....+
T Consensus 122 ~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~ 167 (226)
T PRK13256 122 LPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD 167 (226)
T ss_pred cCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence 24999999999999999999999999999999999888865433
No 94
>PRK14967 putative methyltransferase; Provisional
Probab=98.19 E-value=1.5e-05 Score=67.96 Aligned_cols=88 Identities=16% Similarity=0.178 Sum_probs=60.7
Q ss_pred CCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCccCCc--ccEeeHhhhhcc
Q 043063 158 FKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKSIPA--ADAIFMKWVLTT 215 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p~--~D~v~~~~vlh~ 215 (301)
.....+|||+|||+| +++|. |..++.+++ ..+++++.+|+.+.++. .|+|++.--.+.
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCCC
Confidence 445679999999995 46787 666665443 13688999998765543 499998632221
Q ss_pred CCh-------------------HHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063 216 WTD-------------------DECKLIMENCYKAIPAGGKLIACEPVL 245 (301)
Q Consensus 216 ~~d-------------------~~~~~iL~~~~~aL~pgg~lli~e~~~ 245 (301)
-++ ....++++++.+.|+|||+++++....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 111 113568899999999999999876544
No 95
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.19 E-value=9.3e-06 Score=67.91 Aligned_cols=78 Identities=19% Similarity=0.372 Sum_probs=57.8
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---C-CcccEeeH
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---I-PAADAIFM 209 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~-p~~D~v~~ 209 (301)
.....+|||+|||+| +.+|. |.+++.+++ .++++++.+|+.+. . +..|+|++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 566789999999995 45687 777775542 36899999998653 2 23599887
Q ss_pred hhhhccCChHHHHHHHHHHHHhCCCCCEEEE
Q 043063 210 KWVLTTWTDDECKLIMENCYKAIPAGGKLIA 240 (301)
Q Consensus 210 ~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli 240 (301)
.. ...+...+|+.+.+.|+|||++++
T Consensus 118 ~~-----~~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 118 GG-----GSEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CC-----CcccHHHHHHHHHHHcCCCcEEEE
Confidence 43 223346899999999999999986
No 96
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.18 E-value=3e-06 Score=71.03 Aligned_cols=40 Identities=23% Similarity=0.449 Sum_probs=32.5
Q ss_pred CCcccEeeHhhh---hc-cCChHHHHHHHHHHHHhCCCCCEEEE
Q 043063 201 IPAADAIFMKWV---LT-TWTDDECKLIMENCYKAIPAGGKLIA 240 (301)
Q Consensus 201 ~p~~D~v~~~~v---lh-~~~d~~~~~iL~~~~~aL~pgg~lli 240 (301)
.|..|+|+|-.+ +| +|.|+-..++++++++.|.|||.|++
T Consensus 164 ~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 164 QPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 455688877544 34 79999999999999999999997764
No 97
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.14 E-value=7e-06 Score=72.21 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=49.6
Q ss_pred CceeEEeCCCCcc-CC--c-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 188 PGVTHIGGDMFKS-IP--A-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 188 ~ri~~~~gd~~~~-~p--~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
.+|+|..+|..++ +| . .|+|+|.++|.+++++...+++++++++|+|||.|++-..
T Consensus 204 ~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 204 NYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred ccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 5789999999985 44 2 4999999999999999999999999999999999888765
No 98
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.14 E-value=3.2e-06 Score=76.04 Aligned_cols=161 Identities=14% Similarity=0.184 Sum_probs=93.8
Q ss_pred HHHHHHHHhcCCccchHHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCCC----------
Q 043063 133 NGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPSI---------- 187 (301)
Q Consensus 133 ~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~---------- 187 (301)
.+.|+.++... .+...++....-.+..+|||+|||.| +++|+ +..+++|+++
T Consensus 38 lR~fNNwvKs~---LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~ 114 (331)
T PF03291_consen 38 LRNFNNWVKSV---LIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNS 114 (331)
T ss_dssp HHHHHHHHHHH---HHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-
T ss_pred HHHHhHHHHHH---HHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccccc
Confidence 56777777532 23333332211125689999999985 67898 5666665421
Q ss_pred ------CceeEEeCCCCcc-----CC-c---ccEeeHhhhhcc-C-ChHHHHHHHHHHHHhCCCCCEEEEeccccC----
Q 043063 188 ------PGVTHIGGDMFKS-----IP-A---ADAIFMKWVLTT-W-TDDECKLIMENCYKAIPAGGKLIACEPVLP---- 246 (301)
Q Consensus 188 ------~ri~~~~gd~~~~-----~p-~---~D~v~~~~vlh~-~-~d~~~~~iL~~~~~aL~pgg~lli~e~~~~---- 246 (301)
-...|+.+|-+.. ++ . .|+|-|...||+ | +.+.+..+|+++.+.|+|||.++..-+-.+
T Consensus 115 ~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~ 194 (331)
T PF03291_consen 115 KQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVK 194 (331)
T ss_dssp HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHC
T ss_pred ccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHH
Confidence 2356788888754 22 2 399999999997 4 556677899999999999999887643110
Q ss_pred ---C------CC---CC--------h-HHhhhhhhccHHHHhhhhcccc--ccCHHHHHHHHHhCCCCceEEEE
Q 043063 247 ---D------DS---NE--------S-QRTRALLEGDIFVMTIYRAKGK--HMTEQEFKQLGFSAGFPHLRLYR 297 (301)
Q Consensus 247 ---~------~~---~~--------~-~~~~~~~~~d~~m~~~~~~~g~--~rt~~e~~~~l~~aGf~~~~~~~ 297 (301)
+ .. ++ . ....++..+++.+.. ...+-. .....-+.+++++.||..+...+
T Consensus 195 ~l~~~~~~~~~~~~gN~~y~I~f~~~~~~~~fG~~Y~F~L~~-~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~ 267 (331)
T PF03291_consen 195 RLREKKSNSEKKKFGNSVYSIEFDSDDFFPPFGAKYDFYLED-AVDDCPEYLVPFDFFVKLAKEYGLELVEKKN 267 (331)
T ss_dssp CHHC-EEECCCSCSETSSEEEEESCCSS--CTTEEEEEEETT-CSSCEEEE---HHHHHHHHHHTTEEEEEEEE
T ss_pred HHHhhcccccccccCCccEEEEecccCCCCCCCcEEEEEecC-cCCCCceEEeeHHHHHHHHHHcCCEEEEeCC
Confidence 0 00 00 0 011122223332221 111222 23789999999999999887654
No 99
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.13 E-value=7.4e-06 Score=59.61 Aligned_cols=78 Identities=22% Similarity=0.317 Sum_probs=59.7
Q ss_pred eEEeecCCce--------------eeeeh-hHHHhhCC------CCCceeEEeCCCCccC--C--cccEeeHhhhhccCC
Q 043063 163 RLVDVGGSAG--------------INFDL-PEVVAEAP------SIPGVTHIGGDMFKSI--P--AADAIFMKWVLTTWT 217 (301)
Q Consensus 163 ~vlDvGgG~g--------------~~~Dl-p~v~~~a~------~~~ri~~~~gd~~~~~--p--~~D~v~~~~vlh~~~ 217 (301)
+++|+|||.| +++|. +..+..++ ...++++..+|+.+.. + ..|++++..+++.+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~- 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL- 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh-
Confidence 5899999985 45676 44444333 2468999999998763 2 25999999999875
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEEe
Q 043063 218 DDECKLIMENCYKAIPAGGKLIAC 241 (301)
Q Consensus 218 d~~~~~iL~~~~~aL~pgg~lli~ 241 (301)
.+....+++++.+.|+|+|.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 445679999999999999998875
No 100
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.09 E-value=3.8e-06 Score=73.88 Aligned_cols=75 Identities=23% Similarity=0.362 Sum_probs=55.7
Q ss_pred CcceEEeecCCce------------------eeeeh-hHHHhhCCC-CCceeEEeCCCCcc-CCc--ccEeeHhhhhccC
Q 043063 160 GVKRLVDVGGSAG------------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTW 216 (301)
Q Consensus 160 ~~~~vlDvGgG~g------------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~ 216 (301)
...+|||||||+| +++|+ +.+++.|++ .+++++..+|..+. ++. .|+|+....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 4468999999995 45687 777777654 47899999998763 544 499986432
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 217 TDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 217 ~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
. ..+++++++|+|||++++..+
T Consensus 161 -~----~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 161 -P----CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred -C----CCHHHHHhhccCCCEEEEEeC
Confidence 1 346788999999999998754
No 101
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.09 E-value=8.9e-06 Score=67.89 Aligned_cols=86 Identities=23% Similarity=0.390 Sum_probs=60.2
Q ss_pred hhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---C-Cccc
Q 043063 152 LDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---I-PAAD 205 (301)
Q Consensus 152 ~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~-p~~D 205 (301)
+..++ .....+|||+|||+| +.+|. |.+++.+++ .++++++.+|..+. + +..|
T Consensus 33 ~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d 111 (196)
T PRK07402 33 ISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPD 111 (196)
T ss_pred HHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCC
Confidence 34443 556789999999996 46787 777776653 25799999998652 2 2246
Q ss_pred EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063 206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV 244 (301)
Q Consensus 206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~ 244 (301)
.+++. . ......+|+++++.|+|||++++....
T Consensus 112 ~v~~~-----~-~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 112 RVCIE-----G-GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred EEEEE-----C-CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 55432 1 223468999999999999999988653
No 102
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.08 E-value=9.2e-06 Score=71.83 Aligned_cols=81 Identities=26% Similarity=0.375 Sum_probs=58.1
Q ss_pred CcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc--ccEeeHh----
Q 043063 160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA--ADAIFMK---- 210 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~--~D~v~~~---- 210 (301)
+..+|||+|||+| +.+|. +.+++.+++ .++|+++.+|+++.++. .|+|++.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 3468999999996 46787 777776653 25899999999877654 4999974
Q ss_pred ---------hhhccCCh----------HHHHHHHHHHHHhCCCCCEEEE
Q 043063 211 ---------WVLTTWTD----------DECKLIMENCYKAIPAGGKLIA 240 (301)
Q Consensus 211 ---------~vlh~~~d----------~~~~~iL~~~~~aL~pgg~lli 240 (301)
..+++.|. +...++++.+.+.|+|||++++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 11121111 1236889999999999998874
No 103
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.08 E-value=4.4e-06 Score=69.65 Aligned_cols=83 Identities=13% Similarity=0.328 Sum_probs=57.7
Q ss_pred CcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc----CCc--ccEeeHhh
Q 043063 160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS----IPA--ADAIFMKW 211 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~----~p~--~D~v~~~~ 211 (301)
...++||||||+| +++|. +.+++.+.+ ..+|+++.+|+.+. ++. .|.+++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 3568999999996 56787 666666543 35899999998642 343 37776554
Q ss_pred hhccCChHH-------HHHHHHHHHHhCCCCCEEEEecc
Q 043063 212 VLTTWTDDE-------CKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 212 vlh~~~d~~-------~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
-. .|+... ...+++.+++.|+|||.|++...
T Consensus 96 pd-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PD-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CC-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 32 233221 14689999999999999987653
No 104
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.06 E-value=1.3e-05 Score=72.46 Aligned_cols=94 Identities=19% Similarity=0.166 Sum_probs=64.0
Q ss_pred HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc--cc
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA--AD 205 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~--~D 205 (301)
..+++... +++..+|||+|||+| +++|. +.+++.++. ...+.+..+|+.+. .+. .|
T Consensus 172 ~~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D 250 (329)
T TIGR01177 172 RAMVNLAR-VTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVD 250 (329)
T ss_pred HHHHHHhC-CCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCC
Confidence 33444443 667789999999996 45687 777765543 23488999998764 332 49
Q ss_pred EeeHhhhhc-------cCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 206 AIFMKWVLT-------TWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 206 ~v~~~~vlh-------~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
+|++.--.. +...+...++|+.+++.|+|||++++.-+
T Consensus 251 ~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 251 AIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred EEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 998842111 11223346899999999999999887654
No 105
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.05 E-value=1.1e-05 Score=68.08 Aligned_cols=84 Identities=21% Similarity=0.300 Sum_probs=59.6
Q ss_pred hhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc---ccEe
Q 043063 151 ILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA---ADAI 207 (301)
Q Consensus 151 ~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~---~D~v 207 (301)
++..++ ..+..+|||||||+| +.+|. +.+++.+++ ..++++..+|..+.++. .|+|
T Consensus 70 l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 148 (212)
T PRK00312 70 MTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRI 148 (212)
T ss_pred HHHhcC-CCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEE
Confidence 334443 566789999999996 34565 666666543 24699999998765442 5999
Q ss_pred eHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 208 FMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 208 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
++...++++ .+.+.+.|+|||++++.-.
T Consensus 149 ~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 149 LVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 988766544 3456789999999887644
No 106
>PRK04457 spermidine synthase; Provisional
Probab=98.01 E-value=6.8e-06 Score=71.76 Aligned_cols=83 Identities=17% Similarity=0.276 Sum_probs=61.0
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---CCc-ccEeeHhh
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---IPA-ADAIFMKW 211 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~p~-~D~v~~~~ 211 (301)
+.+.+|||||||+| +++|+ |++++.+++ .+|++++.+|..+. .+. .|+|++-.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 35678999999995 57798 888887753 37899999998653 343 59998742
Q ss_pred hhcc--CChH-HHHHHHHHHHHhCCCCCEEEEec
Q 043063 212 VLTT--WTDD-ECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 212 vlh~--~~d~-~~~~iL~~~~~aL~pgg~lli~e 242 (301)
++. .+.. ....+++++++.|+|||++++.-
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 221 1211 12699999999999999998853
No 107
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.00 E-value=1.2e-05 Score=71.22 Aligned_cols=79 Identities=23% Similarity=0.265 Sum_probs=56.1
Q ss_pred CcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc-ccEeeHhhhhccC
Q 043063 160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA-ADAIFMKWVLTTW 216 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~-~D~v~~~~vlh~~ 216 (301)
+..+|||||||+| +.+|. |.+++.+++ ..++.+..++.....+. .|+|++....
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~--- 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA--- 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH---
Confidence 4589999999996 46787 666766654 24677776663322232 5999886433
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 217 TDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 217 ~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
+....+++++++.|+|||++++...
T Consensus 236 --~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 236 --EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred --HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 2345889999999999999998765
No 108
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.00 E-value=1.4e-05 Score=71.41 Aligned_cols=79 Identities=24% Similarity=0.353 Sum_probs=57.9
Q ss_pred ceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc--ccEeeHhh-----
Q 043063 162 KRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA--ADAIFMKW----- 211 (301)
Q Consensus 162 ~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~--~D~v~~~~----- 211 (301)
.+|||+|||+| +.+|. |.+++.+++ .++|+++.+|+++.+|. .|+|++.-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 68999999996 46787 777776653 25799999999876654 59999741
Q ss_pred --------hhccCCh----------HHHHHHHHHHHHhCCCCCEEEE
Q 043063 212 --------VLTTWTD----------DECKLIMENCYKAIPAGGKLIA 240 (301)
Q Consensus 212 --------vlh~~~d----------~~~~~iL~~~~~aL~pgg~lli 240 (301)
.+++.|. +...++++++.+.|+|||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1122221 2246889999999999998876
No 109
>PHA03411 putative methyltransferase; Provisional
Probab=97.99 E-value=2.1e-05 Score=68.30 Aligned_cols=107 Identities=13% Similarity=0.172 Sum_probs=74.1
Q ss_pred cceEEeecCCce---------------eeeeh-hHHHhhCCC-CCceeEEeCCCCccC-Cc-ccEeeHhhhhccCChHHH
Q 043063 161 VKRLVDVGGSAG---------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKSI-PA-ADAIFMKWVLTTWTDDEC 221 (301)
Q Consensus 161 ~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~~-p~-~D~v~~~~vlh~~~d~~~ 221 (301)
..+|||+|||+| +.+|+ |.+++.+++ .++++++.+|+++.. +. .|+|++.--+++.+..+.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~ 144 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT 144 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence 468999999996 35687 777777665 368999999998753 23 599999877776544321
Q ss_pred ------------------HHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHH
Q 043063 222 ------------------KLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQ 283 (301)
Q Consensus 222 ------------------~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~ 283 (301)
.++++.+...|+|+|.++++ .+. .|..+ ...+.+|+++
T Consensus 145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~---yss----~~~y~-----------------~sl~~~~y~~ 200 (279)
T PHA03411 145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA---YSG----RPYYD-----------------GTMKSNKYLK 200 (279)
T ss_pred hhhhhhccCccccccccHHHHHhhhHheecCCceEEEE---Eec----ccccc-----------------ccCCHHHHHH
Confidence 35667777888888876666 111 11111 1127889999
Q ss_pred HHHhCCCC
Q 043063 284 LGFSAGFP 291 (301)
Q Consensus 284 ~l~~aGf~ 291 (301)
+++++||.
T Consensus 201 ~l~~~g~~ 208 (279)
T PHA03411 201 WSKQTGLV 208 (279)
T ss_pred HHHhcCcE
Confidence 99999985
No 110
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=2.8e-05 Score=67.96 Aligned_cols=94 Identities=14% Similarity=0.190 Sum_probs=67.8
Q ss_pred HHhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCCC------CceeEEeCCCCccCCc-cc
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA-AD 205 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~~------~ri~~~~gd~~~~~p~-~D 205 (301)
+-+++.++ .....+|+|+|||.| +.+|. ...++.+++. .+..+...|.+++... .|
T Consensus 148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd 226 (300)
T COG2813 148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFD 226 (300)
T ss_pred HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccccc
Confidence 45566665 444459999999997 34566 4455555541 3336778898888544 79
Q ss_pred EeeHhhhhcc---CChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 206 AIFMKWVLTT---WTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 206 ~v~~~~vlh~---~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
.|+++=-+|. ..+.-+.++++.+.+.|++||.|.|+-.
T Consensus 227 ~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 227 LIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred EEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 9999999985 3344466999999999999998777655
No 111
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.94 E-value=4.5e-05 Score=65.19 Aligned_cols=128 Identities=19% Similarity=0.155 Sum_probs=77.0
Q ss_pred CcceEEeecCCceeee-------------eh-hHHHhhCCCCCceeEEeCCCCccCC-cccEeeHhhhhccCChHHHHHH
Q 043063 160 GVKRLVDVGGSAGINF-------------DL-PEVVAEAPSIPGVTHIGGDMFKSIP-AADAIFMKWVLTTWTDDECKLI 224 (301)
Q Consensus 160 ~~~~vlDvGgG~g~~~-------------Dl-p~v~~~a~~~~ri~~~~gd~~~~~p-~~D~v~~~~vlh~~~d~~~~~i 224 (301)
...++||||+|-|-+- +. +.|...-+ ..+++++..|-....+ ..|+|.|-++|-...++ ..+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~-~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P--~~L 170 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLS-KKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP--LTL 170 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHH-hCCCeEEehhhhhccCCceEEEeehhhhhccCCH--HHH
Confidence 3468999999997221 22 22322211 2455655544333223 25999999999766665 599
Q ss_pred HHHHHHhCCCCCEEEEeccc--cC---CCC--CChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEE
Q 043063 225 MENCYKAIPAGGKLIACEPV--LP---DDS--NESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR 297 (301)
Q Consensus 225 L~~~~~aL~pgg~lli~e~~--~~---~~~--~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~ 297 (301)
|+.++++|+|+|++++.=.. .+ ..+ ...|.+ .++ + .....+-..+.+.++|+.+||++.....
T Consensus 171 L~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e----~l~--~----~g~~~E~~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 171 LRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSE----LLP--V----KGATFEEQVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred HHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchh----hcC--C----CCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence 99999999999988775422 11 111 111221 111 1 1112222344455899999999999998
Q ss_pred ccC
Q 043063 298 VLD 300 (301)
Q Consensus 298 ~~~ 300 (301)
+||
T Consensus 241 ~PY 243 (265)
T PF05219_consen 241 LPY 243 (265)
T ss_pred cCc
Confidence 886
No 112
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.92 E-value=2.4e-05 Score=71.38 Aligned_cols=83 Identities=17% Similarity=0.383 Sum_probs=58.0
Q ss_pred CcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCc---cCCc--ccEeeHhhh
Q 043063 160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFK---SIPA--ADAIFMKWV 212 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~---~~p~--~D~v~~~~v 212 (301)
....+||||||+| +++|. +.+++.+.+ ..+|.++.+|+.. .+|. .|.|++...
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 3468999999996 57787 556555432 3689999999843 3554 388876432
Q ss_pred hccCChHH-----HHHHHHHHHHhCCCCCEEEEecc
Q 043063 213 LTTWTDDE-----CKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 213 lh~~~d~~-----~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
. .|+... ...+|+.+++.|+|||.+.+..-
T Consensus 202 d-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 202 V-PWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred C-CccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 2 244322 24789999999999999887554
No 113
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.92 E-value=1.4e-05 Score=66.10 Aligned_cols=152 Identities=16% Similarity=0.169 Sum_probs=84.4
Q ss_pred hhhhhHHHhhcCCCCChhhhccCCCchhccccCchHH----HHHHHHHhcCCccchHHhhhcCCCCCCcceEEeecCCce
Q 043063 97 SAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMN----GLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG 172 (301)
Q Consensus 97 ~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~g 172 (301)
.-++.|.+.+.|.. +. ..++.+.++|+.. +.|++.+..|.......+++.+..-+....|.|.|||.+
T Consensus 13 srFR~lNE~LYT~~-s~-------~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA 84 (219)
T PF05148_consen 13 SRFRWLNEQLYTTS-SE-------EALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDA 84 (219)
T ss_dssp HHHHHHHHHHHHS--HH-------HHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-
T ss_pred CchHHHHHhHhcCC-HH-------HHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchH
Confidence 34556777776543 21 1123344555443 455666666666556666665532334578999999995
Q ss_pred e------------eeehhHHHhhCCCCCceeEEeCCCCc-cCCc--ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCE
Q 043063 173 I------------NFDLPEVVAEAPSIPGVTHIGGDMFK-SIPA--ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGK 237 (301)
Q Consensus 173 ~------------~~Dlp~v~~~a~~~~ri~~~~gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~ 237 (301)
- -||+-.. .++ +.+.|+-. |++. .|++++.-.|- -.+ ....|+++.+.|+|||.
T Consensus 85 ~la~~~~~~~~V~SfDLva~------n~~--Vtacdia~vPL~~~svDv~VfcLSLM-GTn--~~~fi~EA~RvLK~~G~ 153 (219)
T PF05148_consen 85 KLAKAVPNKHKVHSFDLVAP------NPR--VTACDIANVPLEDESVDVAVFCLSLM-GTN--WPDFIREANRVLKPGGI 153 (219)
T ss_dssp HHHHH--S---EEEEESS-S------STT--EEES-TTS-S--TT-EEEEEEES----SS---HHHHHHHHHHHEEEEEE
T ss_pred HHHHhcccCceEEEeeccCC------CCC--EEEecCccCcCCCCceeEEEEEhhhh-CCC--cHHHHHHHHheeccCcE
Confidence 1 1344211 123 45567743 3444 39998888772 222 46899999999999999
Q ss_pred EEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEE
Q 043063 238 LIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRL 295 (301)
Q Consensus 238 lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~ 295 (301)
|.|.|....-. +.+++.+.++..||+....
T Consensus 154 L~IAEV~SRf~----------------------------~~~~F~~~~~~~GF~~~~~ 183 (219)
T PF05148_consen 154 LKIAEVKSRFE----------------------------NVKQFIKALKKLGFKLKSK 183 (219)
T ss_dssp EEEEEEGGG-S-----------------------------HHHHHHHHHCTTEEEEEE
T ss_pred EEEEEecccCc----------------------------CHHHHHHHHHHCCCeEEec
Confidence 99999854321 3456666777777776653
No 114
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.91 E-value=3e-05 Score=64.27 Aligned_cols=82 Identities=21% Similarity=0.348 Sum_probs=55.2
Q ss_pred CCCCcceEEeecCCce----------------eeeehhHHHhhCCCCCceeEEeCCCCcc---------CCc--ccEeeH
Q 043063 157 GFKGVKRLVDVGGSAG----------------INFDLPEVVAEAPSIPGVTHIGGDMFKS---------IPA--ADAIFM 209 (301)
Q Consensus 157 ~~~~~~~vlDvGgG~g----------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~---------~p~--~D~v~~ 209 (301)
...+..+|||+|||+| +.+|+.+.. ...+++++.+|+.++ .+. .|+|++
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~ 104 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS 104 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence 3566789999999996 234553321 235788998998653 233 499998
Q ss_pred hhhhc---cCCh------HHHHHHHHHHHHhCCCCCEEEEec
Q 043063 210 KWVLT---TWTD------DECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 210 ~~vlh---~~~d------~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
....| .|.- +...++|+.+++.|+|||++++..
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 54322 1111 223588999999999999999853
No 115
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.90 E-value=6e-06 Score=62.63 Aligned_cols=81 Identities=25% Similarity=0.306 Sum_probs=59.7
Q ss_pred ceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---CCc--ccEeeHhhhhc
Q 043063 162 KRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---IPA--ADAIFMKWVLT 214 (301)
Q Consensus 162 ~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~p~--~D~v~~~~vlh 214 (301)
.+|||+|||+| +++|+ |..++.++. .+|++++.+|+++. .+. .|+|++.--.+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYG 81 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STT
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCc
Confidence 58999999996 46787 776666543 37899999999764 333 49999988776
Q ss_pred cCCh------HHHHHHHHHHHHhCCCCCEEEEec
Q 043063 215 TWTD------DECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 215 ~~~d------~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
.... +....+++++.+.|+|||.++++-
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 82 PRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp SBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 5321 124688999999999999988763
No 116
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.90 E-value=1.5e-05 Score=69.64 Aligned_cols=100 Identities=20% Similarity=0.398 Sum_probs=71.6
Q ss_pred HHHHHHHHhcCCccchHHhhhcCCCCCCcceEEeecCCce--------------eeeehhH-HHhhCCCC--------C-
Q 043063 133 NGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG--------------INFDLPE-VVAEAPSI--------P- 188 (301)
Q Consensus 133 ~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dlp~-v~~~a~~~--------~- 188 (301)
.+.|+.+|.. -++..| .++...++|+|||-| ++.|+.+ .+++|+++ .
T Consensus 99 lRnfNNwIKs-------~LI~~y--~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~ 169 (389)
T KOG1975|consen 99 LRNFNNWIKS-------VLINLY--TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKK 169 (389)
T ss_pred hhhhhHHHHH-------HHHHHH--hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhc
Confidence 4456666642 244544 456678999999994 6789855 46666541 2
Q ss_pred ---ceeEEeCCCCcc-----C----CcccEeeHhhhhcc-CC-hHHHHHHHHHHHHhCCCCCEEEEe
Q 043063 189 ---GVTHIGGDMFKS-----I----PAADAIFMKWVLTT-WT-DDECKLIMENCYKAIPAGGKLIAC 241 (301)
Q Consensus 189 ---ri~~~~gd~~~~-----~----p~~D~v~~~~vlh~-~~-d~~~~~iL~~~~~aL~pgg~lli~ 241 (301)
.+.|+++|-+.. + |..|+|-|.+++|+ |. .+.+..+|+++.+.|+|||.++-.
T Consensus 170 ~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 170 FIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred ccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 367888887743 2 23599999999996 54 566888899999999999988743
No 117
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.89 E-value=3.6e-05 Score=62.60 Aligned_cols=85 Identities=24% Similarity=0.388 Sum_probs=62.1
Q ss_pred hcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccC---CcccEe
Q 043063 153 DGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSI---PAADAI 207 (301)
Q Consensus 153 ~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~---p~~D~v 207 (301)
..+. ..+..+++|||||+| +.+|. ++.++..++ .++++++.||.-+.+ |..|.+
T Consensus 28 s~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~dai 106 (187)
T COG2242 28 SKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAI 106 (187)
T ss_pred HhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEE
Confidence 3443 677889999999996 34564 444444332 489999999986543 346999
Q ss_pred eHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063 208 FMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV 244 (301)
Q Consensus 208 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~ 244 (301)
|+..-- ....+|+.+-..|+|||+|++.-..
T Consensus 107 FIGGg~------~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 107 FIGGGG------NIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred EECCCC------CHHHHHHHHHHHcCcCCeEEEEeec
Confidence 988752 2358999999999999999876543
No 118
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.89 E-value=5.4e-05 Score=63.01 Aligned_cols=107 Identities=22% Similarity=0.341 Sum_probs=78.9
Q ss_pred cceEEeecCCce------------eeeehhHHHhhCCCCCceeEEeCCCCcc-CCc-----ccEeeHhhhhccCCh-HHH
Q 043063 161 VKRLVDVGGSAG------------INFDLPEVVAEAPSIPGVTHIGGDMFKS-IPA-----ADAIFMKWVLTTWTD-DEC 221 (301)
Q Consensus 161 ~~~vlDvGgG~g------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~-~p~-----~D~v~~~~vlh~~~d-~~~ 221 (301)
.-++||||+-+. +-+|+.+. .+ .+...||++- +|. .|+|.++.||.+.|+ .+.
T Consensus 52 ~lrlLEVGals~~N~~s~~~~fdvt~IDLns~------~~--~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~R 123 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTSGWFDVTRIDLNSQ------HP--GILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQR 123 (219)
T ss_pred cceEEeecccCCCCcccccCceeeEEeecCCC------CC--CceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHH
Confidence 369999999851 34555221 11 2345788874 663 499999999999996 446
Q ss_pred HHHHHHHHHhCCCCCE-----EEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEE
Q 043063 222 KLIMENCYKAIPAGGK-----LIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLY 296 (301)
Q Consensus 222 ~~iL~~~~~aL~pgg~-----lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~ 296 (301)
-++|+++++.|+|+|. |+|+-+.. |..|.+..+.+.|.++++..||..++.+
T Consensus 124 G~Ml~r~~~fL~~~g~~~~~~LFlVlP~~-----------------------Cv~NSRy~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 124 GEMLRRAHKFLKPPGLSLFPSLFLVLPLP-----------------------CVTNSRYMTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred HHHHHHHHHHhCCCCccCcceEEEEeCch-----------------------HhhcccccCHHHHHHHHHhCCcEEEEEE
Confidence 6899999999999998 77664311 1335566689999999999999998876
Q ss_pred Ec
Q 043063 297 RV 298 (301)
Q Consensus 297 ~~ 298 (301)
..
T Consensus 181 ~~ 182 (219)
T PF11968_consen 181 KS 182 (219)
T ss_pred ec
Confidence 54
No 119
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.88 E-value=3.5e-05 Score=64.81 Aligned_cols=81 Identities=20% Similarity=0.263 Sum_probs=58.0
Q ss_pred CcceEEeecCCce-------------eeeeh-hHHHhhCCCCCceeEEeC-------CCCccC--Ccc-cEeeHhhhhcc
Q 043063 160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPSIPGVTHIGG-------DMFKSI--PAA-DAIFMKWVLTT 215 (301)
Q Consensus 160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~~ri~~~~g-------d~~~~~--p~~-D~v~~~~vlh~ 215 (301)
+.+.++|||||+| |..|. +.+++.+.+..+++.... ++.... ++. |+|++.+++|-
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW 112 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh
Confidence 4458999999997 56687 788998887655544221 211112 333 99999999998
Q ss_pred CChHHHHHHHHHHHHhCCCCC-EEEEecc
Q 043063 216 WTDDECKLIMENCYKAIPAGG-KLIACEP 243 (301)
Q Consensus 216 ~~d~~~~~iL~~~~~aL~pgg-~lli~e~ 243 (301)
++-+ ++.+.+++.|++.| .+.+.-.
T Consensus 113 Fdle---~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 113 FDLE---RFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred hchH---HHHHHHHHHcCCCCCEEEEEEc
Confidence 8875 88999999999876 5555543
No 120
>PRK00811 spermidine synthase; Provisional
Probab=97.88 E-value=2e-05 Score=69.58 Aligned_cols=83 Identities=25% Similarity=0.342 Sum_probs=59.9
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-----------CCceeEEeCCCCccCC---c-ccEe
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-----------IPGVTHIGGDMFKSIP---A-ADAI 207 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-----------~~ri~~~~gd~~~~~p---~-~D~v 207 (301)
.+..+||+||||.| +++|+ |.+++.+++ .+|++++.+|....++ . .|+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 35689999999995 45677 777777653 3689999999876432 2 5999
Q ss_pred eHhhhhccCChHH--HHHHHHHHHHhCCCCCEEEEe
Q 043063 208 FMKWVLTTWTDDE--CKLIMENCYKAIPAGGKLIAC 241 (301)
Q Consensus 208 ~~~~vlh~~~d~~--~~~iL~~~~~aL~pgg~lli~ 241 (301)
++-..-+..+... ...+++.+++.|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 8754333222221 357899999999999998875
No 121
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.87 E-value=3.2e-05 Score=68.46 Aligned_cols=79 Identities=23% Similarity=0.346 Sum_probs=57.0
Q ss_pred ceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc--ccEeeHh------
Q 043063 162 KRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA--ADAIFMK------ 210 (301)
Q Consensus 162 ~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~--~D~v~~~------ 210 (301)
.+|||+|||+| +.+|. +..++.+++ .++++|+.+|++++++. .|+|++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 68999999996 45687 667766553 24699999999887654 5988874
Q ss_pred -------hhhccCCh----------HHHHHHHHHHHHhCCCCCEEEE
Q 043063 211 -------WVLTTWTD----------DECKLIMENCYKAIPAGGKLIA 240 (301)
Q Consensus 211 -------~vlh~~~d----------~~~~~iL~~~~~aL~pgg~lli 240 (301)
.++++-|. +...++++++.+.|+|||.+++
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 23332221 2356889999999999997754
No 122
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=4.4e-05 Score=63.43 Aligned_cols=86 Identities=22% Similarity=0.336 Sum_probs=65.2
Q ss_pred HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc-c--c
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA-A--D 205 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~-~--D 205 (301)
..++..++ .+...+||+||||+| +-+|. +...+.|++ ..+|.++.||-..-+|. + |
T Consensus 62 A~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD 140 (209)
T COG2518 62 ARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYD 140 (209)
T ss_pred HHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcC
Confidence 34555564 888899999999996 33565 777777764 35799999999887776 3 9
Q ss_pred EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
.|+.....-..|+ . +.+.|+|||++++-.-
T Consensus 141 ~I~Vtaaa~~vP~----~----Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 141 RIIVTAAAPEVPE----A----LLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEEEeeccCCCCH----H----HHHhcccCCEEEEEEc
Confidence 9999888766665 3 4446999999998776
No 123
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.85 E-value=0.0001 Score=67.79 Aligned_cols=80 Identities=21% Similarity=0.334 Sum_probs=54.0
Q ss_pred CcceEEeecCCce---------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc---ccEeeHhhhhc
Q 043063 160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA---ADAIFMKWVLT 214 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~---~D~v~~~~vlh 214 (301)
...++||+|||+| +.+|. |.+++.+++ ..+++++.+|+++. .|. .|+|+++--..
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 4468999999996 46787 778877654 24799999999875 432 49998843211
Q ss_pred c---------------------CCh--HHHHHHHHHHHHhCCCCCEEE
Q 043063 215 T---------------------WTD--DECKLIMENCYKAIPAGGKLI 239 (301)
Q Consensus 215 ~---------------------~~d--~~~~~iL~~~~~aL~pgg~ll 239 (301)
. ..| +--.++++.+.+.|+|||.++
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~li 378 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLL 378 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEE
Confidence 0 000 113367777778888888765
No 124
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.85 E-value=3.3e-05 Score=64.72 Aligned_cols=94 Identities=23% Similarity=0.433 Sum_probs=54.3
Q ss_pred hhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCC---------------CCCceeEEeCCCCc
Q 043063 151 ILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAP---------------SIPGVTHIGGDMFK 199 (301)
Q Consensus 151 ~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~---------------~~~ri~~~~gd~~~ 199 (301)
+++.+. ..+...++|||||.| +++++ |...+.|. ...++++..|||.+
T Consensus 34 il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~ 112 (205)
T PF08123_consen 34 ILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD 112 (205)
T ss_dssp HHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT
T ss_pred HHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc
Confidence 444453 667789999999995 46665 44333221 14689999999987
Q ss_pred c------CCcccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCC
Q 043063 200 S------IPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDD 248 (301)
Q Consensus 200 ~------~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~ 248 (301)
. +.++|+|++++.. |+++- ..-|++....|++|.+++......+..
T Consensus 113 ~~~~~~~~s~AdvVf~Nn~~--F~~~l-~~~L~~~~~~lk~G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 113 PDFVKDIWSDADVVFVNNTC--FDPDL-NLALAELLLELKPGARIISTKPFCPRR 164 (205)
T ss_dssp HHHHHHHGHC-SEEEE--TT--T-HHH-HHHHHHHHTTS-TT-EEEESS-SS-TT
T ss_pred cHhHhhhhcCCCEEEEeccc--cCHHH-HHHHHHHHhcCCCCCEEEECCCcCCCC
Confidence 4 2347999999986 66654 455577778899999999888777654
No 125
>PRK03612 spermidine synthase; Provisional
Probab=97.85 E-value=5.5e-05 Score=72.52 Aligned_cols=84 Identities=20% Similarity=0.250 Sum_probs=60.5
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-------------CCceeEEeCCCCcc---CCc-cc
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------------IPGVTHIGGDMFKS---IPA-AD 205 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------------~~ri~~~~gd~~~~---~p~-~D 205 (301)
++..+|||||||+| +.+|+ |++++.+++ .+|++++.+|.++. .++ .|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 35689999999996 45687 888887765 26899999998864 233 59
Q ss_pred EeeHhhhhccCChH---HHHHHHHHHHHhCCCCCEEEEec
Q 043063 206 AIFMKWVLTTWTDD---ECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 206 ~v~~~~vlh~~~d~---~~~~iL~~~~~aL~pgg~lli~e 242 (301)
+|++...-+..+.. ...++++++++.|+|||++++.-
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 99886432211111 12368999999999999988764
No 126
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.83 E-value=3.6e-05 Score=61.99 Aligned_cols=107 Identities=17% Similarity=0.194 Sum_probs=70.5
Q ss_pred ceEEeecCCce---------------eeeeh-hHHHhhCC------CC-CceeEEeCCCCcc--CCc-ccEeeHhhhhcc
Q 043063 162 KRLVDVGGSAG---------------INFDL-PEVVAEAP------SI-PGVTHIGGDMFKS--IPA-ADAIFMKWVLTT 215 (301)
Q Consensus 162 ~~vlDvGgG~g---------------~~~Dl-p~v~~~a~------~~-~ri~~~~gd~~~~--~p~-~D~v~~~~vlh~ 215 (301)
.+|||+|||.| ++.|. +..++.|+ .. +.|+|+..|++++ .+. .|+|+=+.++-.
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 49999999996 34554 33333332 22 4599999999986 333 487776666543
Q ss_pred C------ChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCC
Q 043063 216 W------TDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAG 289 (301)
Q Consensus 216 ~------~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aG 289 (301)
+ ++......+..+.+.|+|||.++|.-+- .|..|+.+.++.-|
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN-------------------------------~T~dELv~~f~~~~ 197 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN-------------------------------FTKDELVEEFENFN 197 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEecC-------------------------------ccHHHHHHHHhcCC
Confidence 2 2222234577888889999988876541 16677777777777
Q ss_pred CCceEEEEcc
Q 043063 290 FPHLRLYRVL 299 (301)
Q Consensus 290 f~~~~~~~~~ 299 (301)
|.....+|.+
T Consensus 198 f~~~~tvp~p 207 (227)
T KOG1271|consen 198 FEYLSTVPTP 207 (227)
T ss_pred eEEEEeeccc
Confidence 7777776654
No 127
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.82 E-value=0.00011 Score=70.28 Aligned_cols=80 Identities=21% Similarity=0.317 Sum_probs=56.1
Q ss_pred cceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc--ccEeeHhh----
Q 043063 161 VKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA--ADAIFMKW---- 211 (301)
Q Consensus 161 ~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~--~D~v~~~~---- 211 (301)
..+|||||||+| +.+|. |.+++.+++ .++++++.+|+++.++. .|+|++.-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 468999999996 46787 677776653 25899999999876543 59888731
Q ss_pred ----------hhccCC------h----HHHHHHHHHHHHhCCCCCEEEE
Q 043063 212 ----------VLTTWT------D----DECKLIMENCYKAIPAGGKLIA 240 (301)
Q Consensus 212 ----------vlh~~~------d----~~~~~iL~~~~~aL~pgg~lli 240 (301)
++.+.| . +.-.++++.+.+.|+|||++++
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 111111 1 1234678899999999998875
No 128
>PRK01581 speE spermidine synthase; Validated
Probab=97.82 E-value=2.7e-05 Score=70.19 Aligned_cols=83 Identities=16% Similarity=0.134 Sum_probs=60.0
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-------------CCceeEEeCCCCccCC---c-cc
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------------IPGVTHIGGDMFKSIP---A-AD 205 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------------~~ri~~~~gd~~~~~p---~-~D 205 (301)
.++.+||+||||.| +++|+ |+|++.|++ .+|++++.+|..+.++ . .|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 45689999999995 45687 788887663 3799999999986432 2 49
Q ss_pred EeeHhhhhc---cCChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063 206 AIFMKWVLT---TWTDDECKLIMENCYKAIPAGGKLIAC 241 (301)
Q Consensus 206 ~v~~~~vlh---~~~d~~~~~iL~~~~~aL~pgg~lli~ 241 (301)
+|++-..-. ..+.-....+++.+++.|+|||.+++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999763110 011122357899999999999998876
No 129
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.82 E-value=6.4e-05 Score=64.30 Aligned_cols=86 Identities=16% Similarity=0.218 Sum_probs=62.5
Q ss_pred CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccC---Cc--ccEeeH
Q 043063 158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSI---PA--ADAIFM 209 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~---p~--~D~v~~ 209 (301)
.+...+|||+|||+| +++++ +.+.+.|++ .+||+++.+|+..-. +. .|+|++
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 344789999999997 35676 556665553 489999999987542 22 489998
Q ss_pred hhhhccCChH----------------HHHHHHHHHHHhCCCCCEEEEecc
Q 043063 210 KWVLTTWTDD----------------ECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 210 ~~vlh~~~d~----------------~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
+=-.+.-++. ....+++.+.+.|+|||++.++..
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 7655443332 245789999999999999988765
No 130
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.81 E-value=0.00013 Score=63.53 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=50.8
Q ss_pred CceeEEeCCCCccC--Cc-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063 188 PGVTHIGGDMFKSI--PA-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVL 245 (301)
Q Consensus 188 ~ri~~~~gd~~~~~--p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~ 245 (301)
..|.|..+|.+++. +. .|+|+|++||=+++.+.-.+++++.+..|+|||.|++-....
T Consensus 184 ~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~ 244 (268)
T COG1352 184 KMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSET 244 (268)
T ss_pred cccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCcc
Confidence 56899999999874 23 499999999999999989999999999999999999977643
No 131
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.76 E-value=1.4e-05 Score=67.31 Aligned_cols=87 Identities=23% Similarity=0.419 Sum_probs=59.4
Q ss_pred hHHhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc-
Q 043063 148 MTSILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA- 203 (301)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~- 203 (301)
...++..++ ..+..+|||||+|+| +.+|. |.+++.|++ ..+|+++.+|....+|.
T Consensus 61 ~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 345566665 788899999999995 24575 777777764 36899999998776654
Q ss_pred --ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 204 --ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 204 --~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
.|.|++.......|. .+.+.|++||+|++--.
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEEES
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcCCCcEEEEEEc
Confidence 399999887755553 24556899999988544
No 132
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00013 Score=64.18 Aligned_cols=79 Identities=27% Similarity=0.408 Sum_probs=52.9
Q ss_pred CCcceEEeecCCce--------------eeeeh-hHHHhhCCCC---Ccee----EEeCCCCccCCc---ccEeeHhhhh
Q 043063 159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPSI---PGVT----HIGGDMFKSIPA---ADAIFMKWVL 213 (301)
Q Consensus 159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~---~ri~----~~~gd~~~~~p~---~D~v~~~~vl 213 (301)
.++.+++|+|||+| +++|+ |..++.++.+ +.|. ....+.. ..+. +|+|+++= |
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~-~~~~~~~~DvIVANI-L 238 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLL-EVPENGPFDVIVANI-L 238 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccch-hhcccCcccEEEehh-h
Confidence 46789999999996 46788 6666666542 3333 2222222 2332 59988754 3
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 214 TTWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
.+ -..++...+.+.++|||++++.--
T Consensus 239 ---A~-vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 239 ---AE-VLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred ---HH-HHHHHHHHHHHHcCCCceEEEEee
Confidence 33 346899999999999999887653
No 133
>PLN02366 spermidine synthase
Probab=97.72 E-value=6.5e-05 Score=67.00 Aligned_cols=84 Identities=23% Similarity=0.226 Sum_probs=58.7
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCcc---CCc--ccEe
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKS---IPA--ADAI 207 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~---~p~--~D~v 207 (301)
.+..+||+||||.| +++|+ |.|++.+++ .+|++++.+|.+.- .+. .|+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 45789999999995 35677 667776654 36999999997643 332 5999
Q ss_pred eHhhhhccCChH--HHHHHHHHHHHhCCCCCEEEEec
Q 043063 208 FMKWVLTTWTDD--ECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 208 ~~~~vlh~~~d~--~~~~iL~~~~~aL~pgg~lli~e 242 (301)
++-..-+..+.. -...+++.+++.|+|||.+++.-
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 874332221211 13578999999999999987643
No 134
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.68 E-value=0.00035 Score=59.45 Aligned_cols=110 Identities=17% Similarity=0.164 Sum_probs=66.9
Q ss_pred ccccCchHHHHHHHH----HhcCCccchHHhhhcCCCCCCcceEEeecCCce----------eeeehhHHHhhCCCCCce
Q 043063 125 YYGKMPEMNGLMRKA----MSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG----------INFDLPEVVAEAPSIPGV 190 (301)
Q Consensus 125 ~~~~~~~~~~~~~~~----m~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~g----------~~~Dlp~v~~~a~~~~ri 190 (301)
.+..+|...+.|.+. ...|-......+++.+..-+....|-|+|||-+ .-|||-.+ +=
T Consensus 141 lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~~~~~kV~SfDL~a~--------~~ 212 (325)
T KOG3045|consen 141 LFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIASSERHKVHSFDLVAV--------NE 212 (325)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhhccccceeeeeeecC--------CC
Confidence 344555555444443 334444344555554432235678999999995 22454222 22
Q ss_pred eEEeCCCCcc-CCc--ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063 191 THIGGDMFKS-IPA--ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVL 245 (301)
Q Consensus 191 ~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~ 245 (301)
.+++.|+..- ++. .|++++...|- -.+ ...+++.+++.|+|||.++|.|.-.
T Consensus 213 ~V~~cDm~~vPl~d~svDvaV~CLSLM-gtn--~~df~kEa~RiLk~gG~l~IAEv~S 267 (325)
T KOG3045|consen 213 RVIACDMRNVPLEDESVDVAVFCLSLM-GTN--LADFIKEANRILKPGGLLYIAEVKS 267 (325)
T ss_pred ceeeccccCCcCccCcccEEEeeHhhh-ccc--HHHHHHHHHHHhccCceEEEEehhh
Confidence 3445677652 443 48877766662 222 4689999999999999999998743
No 135
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.68 E-value=6.8e-05 Score=67.25 Aligned_cols=83 Identities=20% Similarity=0.430 Sum_probs=57.6
Q ss_pred hhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc---c
Q 043063 151 ILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA---A 204 (301)
Q Consensus 151 ~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~---~ 204 (301)
+++..+ .++..+|||||||+| +.+|. |++++.+++ .+++.++.+|..+..+. .
T Consensus 72 ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~f 150 (322)
T PRK13943 72 FMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPY 150 (322)
T ss_pred HHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCc
Confidence 444443 566789999999995 34576 677666543 36799999998765332 5
Q ss_pred cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063 205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
|+|++...+++.+ ..+.+.|+|||++++..
T Consensus 151 D~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 151 DVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 9999876554433 34567899999988754
No 136
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.63 E-value=8.3e-05 Score=65.35 Aligned_cols=89 Identities=22% Similarity=0.310 Sum_probs=58.9
Q ss_pred HhhhcCCCCCCcceEEeecCCcee------------e--eehhHHHhhCCC-------CCceeEEeCCCCcc-CCc-ccE
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAGI------------N--FDLPEVVAEAPS-------IPGVTHIGGDMFKS-IPA-ADA 206 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g~------------~--~Dlp~v~~~a~~-------~~ri~~~~gd~~~~-~p~-~D~ 206 (301)
+++.+-.+|++ +.|||||||+|| + ++-.++.+.|++ .+||++++|-+.+. +|+ +|+
T Consensus 168 Ail~N~sDF~~-kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~Dv 246 (517)
T KOG1500|consen 168 AILENHSDFQD-KIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDV 246 (517)
T ss_pred HHHhcccccCC-cEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccE
Confidence 34433323654 689999999974 2 355667666654 48999999998765 887 698
Q ss_pred eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEE
Q 043063 207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLI 239 (301)
Q Consensus 207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~ll 239 (301)
++.--+=..+-++...+---.+++.|+|.|+.+
T Consensus 247 iISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 247 IISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred EEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 876544443334322333334678999999765
No 137
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.59 E-value=0.0001 Score=64.71 Aligned_cols=83 Identities=23% Similarity=0.238 Sum_probs=58.2
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCccC---Cc-ccEee
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-ADAIF 208 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~~---p~-~D~v~ 208 (301)
+++.+||+||||+| +++|+ +.+++.+++ .+|++++.+|.++.+ +. .|+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 34569999999995 34566 666665543 368999999887532 33 59998
Q ss_pred HhhhhccCChHH--HHHHHHHHHHhCCCCCEEEEe
Q 043063 209 MKWVLTTWTDDE--CKLIMENCYKAIPAGGKLIAC 241 (301)
Q Consensus 209 ~~~vlh~~~d~~--~~~iL~~~~~aL~pgg~lli~ 241 (301)
+...-+.-+... ...+++.+++.|+|||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 865432222222 458899999999999998886
No 138
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.55 E-value=0.00027 Score=61.35 Aligned_cols=81 Identities=20% Similarity=0.277 Sum_probs=55.6
Q ss_pred cceEEeecCCce---------------eeeeh-hHHHhhCCCC---CceeEEeCCCCccCC-----cccEeeHhhhh---
Q 043063 161 VKRLVDVGGSAG---------------INFDL-PEVVAEAPSI---PGVTHIGGDMFKSIP-----AADAIFMKWVL--- 213 (301)
Q Consensus 161 ~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~~---~ri~~~~gd~~~~~p-----~~D~v~~~~vl--- 213 (301)
..++||+|||+| +.+|. |.+++.++++ .+++++.+|+++.++ ..|+|++.--.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 458999999996 45687 7777776642 346899999886543 24988865311
Q ss_pred ---ccCChH------------------HHHHHHHHHHHhCCCCCEEEEe
Q 043063 214 ---TTWTDD------------------ECKLIMENCYKAIPAGGKLIAC 241 (301)
Q Consensus 214 ---h~~~d~------------------~~~~iL~~~~~aL~pgg~lli~ 241 (301)
+..+++ -..++++.+.+.|+|||++++.
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 111111 1347888889999999998865
No 139
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.54 E-value=0.00034 Score=65.90 Aligned_cols=89 Identities=21% Similarity=0.299 Sum_probs=61.7
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc--ccEeeHh--
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA--ADAIFMK-- 210 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~--~D~v~~~-- 210 (301)
.....+|||+|||+| +.+|. +..++.+++ .++|+++.+|+.+..+. .|+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 445679999999996 35687 667666543 25789999998764332 5988851
Q ss_pred ----hhh-------ccCChHHH-------HHHHHHHHHhCCCCCEEEEeccccC
Q 043063 211 ----WVL-------TTWTDDEC-------KLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 211 ----~vl-------h~~~d~~~-------~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
.++ ..+++++. .++|+++.+.|+|||+|+...+...
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 111 12333322 3699999999999999999887664
No 140
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.0003 Score=59.95 Aligned_cols=91 Identities=20% Similarity=0.336 Sum_probs=70.1
Q ss_pred HHhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA 203 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~ 203 (301)
..++...+ .++..+|+|.|.|+| +.||. ++-.+.|++ .++|++..+|+.+. .+.
T Consensus 84 ~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~ 162 (256)
T COG2519 84 GYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE 162 (256)
T ss_pred HHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc
Confidence 34455553 888999999999995 45665 666666654 36799999999876 444
Q ss_pred -ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCC
Q 043063 204 -ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPD 247 (301)
Q Consensus 204 -~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~ 247 (301)
.|++++ +++|+. ..|.+++++|+|||++.+.-++.++
T Consensus 163 ~vDav~L-----Dmp~PW--~~le~~~~~Lkpgg~~~~y~P~veQ 200 (256)
T COG2519 163 DVDAVFL-----DLPDPW--NVLEHVSDALKPGGVVVVYSPTVEQ 200 (256)
T ss_pred ccCEEEE-----cCCChH--HHHHHHHHHhCCCcEEEEEcCCHHH
Confidence 587654 778875 9999999999999999998887753
No 141
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.45 E-value=0.00024 Score=60.99 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=58.8
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC---------cc
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP---------AA 204 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p---------~~ 204 (301)
..+..+|||||||+| +.+|. |+.++.|++ .++|+++.||..+.++ ..
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 345789999999985 35676 666665543 3789999999976321 24
Q ss_pred cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063 205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVL 245 (301)
Q Consensus 205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~ 245 (301)
|+|++- -+.+.-..++..+.+.|+|||.+++-+...
T Consensus 146 D~VfiD-----a~k~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 146 DFAFVD-----ADKPNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 988773 233445688999999999999877655444
No 142
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.41 E-value=0.00046 Score=61.75 Aligned_cols=94 Identities=11% Similarity=0.210 Sum_probs=64.8
Q ss_pred HHhhhcCCCCCCcceEEeecCCce-------------------eeeehh-HHHhhC----C--CCCceeE--EeCCCCcc
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG-------------------INFDLP-EVVAEA----P--SIPGVTH--IGGDMFKS 200 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------------~~~Dlp-~v~~~a----~--~~~ri~~--~~gd~~~~ 200 (301)
+++++.++ ...+++|+|||++ +-+|+. +.++.+ . ..+.+++ +.|||.+.
T Consensus 68 ~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 68 SDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 44555443 4568999999994 245763 333332 2 2355655 78898764
Q ss_pred ---CCc------c-cEeeHhhhhccCChHHHHHHHHHHHH-hCCCCCEEEE-ecccc
Q 043063 201 ---IPA------A-DAIFMKWVLTTWTDDECKLIMENCYK-AIPAGGKLIA-CEPVL 245 (301)
Q Consensus 201 ---~p~------~-D~v~~~~vlh~~~d~~~~~iL~~~~~-aL~pgg~lli-~e~~~ 245 (301)
+|. . -++++...+.+++++++..+|+++++ .|+||+.++| .|.+.
T Consensus 145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k 201 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCK 201 (319)
T ss_pred HhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCC
Confidence 221 2 56777789999999999999999999 9999987766 45443
No 143
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.32 E-value=0.00023 Score=66.78 Aligned_cols=111 Identities=23% Similarity=0.312 Sum_probs=67.4
Q ss_pred CchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCC---CCcceEEeecCCceeee-------------------eh-
Q 043063 121 PTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGF---KGVKRLVDVGGSAGINF-------------------DL- 177 (301)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~---~~~~~vlDvGgG~g~~~-------------------Dl- 177 (301)
..|+.+++++...+.|.+|+.. ++.+..... .....|+|||||+|++. +-
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn 223 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKN 223 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESS
T ss_pred ccHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 4578888999888999998742 222222111 12568999999997433 21
Q ss_pred hHHHhh------CCC-CCceeEEeCCCCcc-CCc-ccEeeHhhhhccCCh-HHHHHHHHHHHHhCCCCCEEE
Q 043063 178 PEVVAE------APS-IPGVTHIGGDMFKS-IPA-ADAIFMKWVLTTWTD-DECKLIMENCYKAIPAGGKLI 239 (301)
Q Consensus 178 p~v~~~------a~~-~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~~~d-~~~~~iL~~~~~aL~pgg~ll 239 (301)
|..+.. ... .++|+++.+|+.+- .|. +|+++.-.. ..+.+ +-....|....+.|+|||.++
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELL-GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEecc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 211110 111 38999999999876 675 798875444 44444 446677888889999998665
No 144
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=97.30 E-value=0.00038 Score=56.63 Aligned_cols=89 Identities=13% Similarity=0.223 Sum_probs=55.8
Q ss_pred HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc-CCc--ccEe
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPA--ADAI 207 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~-~p~--~D~v 207 (301)
..+++.++ +.+..++||||||+| +.+|. +.+++.+++ .++++++.+|+.+. .+. .|.|
T Consensus 3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~v 81 (169)
T smart00650 3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKV 81 (169)
T ss_pred HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEE
Confidence 34556664 667789999999996 46777 556655543 36899999999875 444 3776
Q ss_pred eHhhhhccCChHHHHHHHHHHHHh--CCCCCEEEEecc
Q 043063 208 FMKWVLTTWTDDECKLIMENCYKA--IPAGGKLIACEP 243 (301)
Q Consensus 208 ~~~~vlh~~~d~~~~~iL~~~~~a--L~pgg~lli~e~ 243 (301)
+. +..++.+. .++.++.+. +.++|.+++...
T Consensus 82 i~-n~Py~~~~----~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 82 VG-NLPYNIST----PILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred EE-CCCcccHH----HHHHHHHhcCCCcceEEEEEEHH
Confidence 55 44444444 344444433 235566655554
No 145
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.30 E-value=0.00083 Score=62.95 Aligned_cols=95 Identities=14% Similarity=0.183 Sum_probs=63.4
Q ss_pred hhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-C--Cc--
Q 043063 152 LDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-I--PA-- 203 (301)
Q Consensus 152 ~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~--p~-- 203 (301)
+..++ ..+..+|||+|||+| +.+|. +..++.+++ ..++.++.+|.... . +.
T Consensus 231 ~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~ 309 (426)
T TIGR00563 231 ATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQ 309 (426)
T ss_pred HHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccc
Confidence 33443 556689999999996 34676 666655543 12345577776643 1 22
Q ss_pred ccEeeH------hhhhccCCh-------HH-------HHHHHHHHHHhCCCCCEEEEeccccCC
Q 043063 204 ADAIFM------KWVLTTWTD-------DE-------CKLIMENCYKAIPAGGKLIACEPVLPD 247 (301)
Q Consensus 204 ~D~v~~------~~vlh~~~d-------~~-------~~~iL~~~~~aL~pgg~lli~e~~~~~ 247 (301)
.|.|++ ..+++..|+ ++ ..++|+++.+.|+|||+|+...+....
T Consensus 310 fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 310 FDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred cCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 498885 345665554 11 358999999999999999999887753
No 146
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.26 E-value=0.00037 Score=57.94 Aligned_cols=82 Identities=17% Similarity=0.243 Sum_probs=53.8
Q ss_pred cceEEeecCCce-------------eeeeh-hHHHhhCCCC-CceeEEeCCCCccCC--c--ccEeeHhhhhc-------
Q 043063 161 VKRLVDVGGSAG-------------INFDL-PEVVAEAPSI-PGVTHIGGDMFKSIP--A--ADAIFMKWVLT------- 214 (301)
Q Consensus 161 ~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~-~ri~~~~gd~~~~~p--~--~D~v~~~~vlh------- 214 (301)
..-|||||||+| +++|. |.+++.|.+. -.-.++.+||=+.+| . .|.++....+.
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~ 130 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADK 130 (270)
T ss_pred CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCc
Confidence 678999999996 57898 9999988751 113466677765443 2 26555443331
Q ss_pred --cCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063 215 --TWTDDECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 215 --~~~d~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
+.|..-...++..++..|++|++-++.=
T Consensus 131 s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 131 SLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred cccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 1123334566888999999998877653
No 147
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.25 E-value=0.00072 Score=63.49 Aligned_cols=89 Identities=16% Similarity=0.241 Sum_probs=62.2
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccC---C---c-ccEe
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSI---P---A-ADAI 207 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~---p---~-~D~v 207 (301)
..+..+|||+|||+| +.+|. +..++.+++ ..+|+++.+|..... + . .|.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 455689999999995 34576 666665543 256899999986531 1 2 4998
Q ss_pred eHh------hhhccCCh-------HH-------HHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 208 FMK------WVLTTWTD-------DE-------CKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 208 ~~~------~vlh~~~d-------~~-------~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
++- .+++..++ ++ -.++|+++.+.|+|||+|+...+...
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 862 34444443 22 35889999999999999998886654
No 148
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.24 E-value=0.001 Score=62.68 Aligned_cols=93 Identities=18% Similarity=0.255 Sum_probs=61.6
Q ss_pred hcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CCc-cc
Q 043063 153 DGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IPA-AD 205 (301)
Q Consensus 153 ~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p~-~D 205 (301)
..++ ..+..+|||+|||+| +.+|+ +..++.+++ ..+|+++.+|+.+. ++. .|
T Consensus 244 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD 322 (444)
T PRK14902 244 PALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFD 322 (444)
T ss_pred HHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCC
Confidence 3443 556689999999995 45687 666665543 24599999998753 333 59
Q ss_pred EeeHhh------hhc-------cCChHH-------HHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 206 AIFMKW------VLT-------TWTDDE-------CKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 206 ~v~~~~------vlh-------~~~d~~-------~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
+|++-- ++. .++..+ ...+|+.+.+.|+|||+|+...+...
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 888631 111 112222 24689999999999999987665543
No 149
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.23 E-value=0.001 Score=62.30 Aligned_cols=93 Identities=16% Similarity=0.212 Sum_probs=61.7
Q ss_pred hcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCCC-----CceeEEeCCCCcc---CC-c-ccE
Q 043063 153 DGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPSI-----PGVTHIGGDMFKS---IP-A-ADA 206 (301)
Q Consensus 153 ~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~~-----~ri~~~~gd~~~~---~p-~-~D~ 206 (301)
..++ .....+|||+|||+| +.+|. +..++.+++. -+++++.+|..+. .+ . .|.
T Consensus 238 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~ 316 (427)
T PRK10901 238 TLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDR 316 (427)
T ss_pred HHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCE
Confidence 3443 456689999999996 35687 6666665431 2478999998753 22 2 498
Q ss_pred ee----Hhh--hhc-------cCChHH-------HHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 207 IF----MKW--VLT-------TWTDDE-------CKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 207 v~----~~~--vlh-------~~~d~~-------~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
|+ |+. ++. ....++ ..++|+++.+.|+|||+++...+...
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 88 332 111 112221 24799999999999999998886554
No 150
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=97.22 E-value=0.00031 Score=62.17 Aligned_cols=78 Identities=21% Similarity=0.236 Sum_probs=51.2
Q ss_pred CcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC--cccEeeHhhhhcc
Q 043063 160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP--AADAIFMKWVLTT 215 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p--~~D~v~~~~vlh~ 215 (301)
+..+|||||||+| +.+|. |..++.+++ .+++.+.. ..+.+ .+|+|+++-.
T Consensus 161 ~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~---~~~~~~~~~dlvvANI~--- 234 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSL---SEDLVEGKFDLVVANIL--- 234 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC---TSCTCCS-EEEEEEES----
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE---ecccccccCCEEEECCC---
Confidence 4579999999996 36787 666666553 25665531 22333 3599885433
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063 216 WTDDECKLIMENCYKAIPAGGKLIACEPVL 245 (301)
Q Consensus 216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~ 245 (301)
.+....++..+.+.|+|||++++.-...
T Consensus 235 --~~vL~~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 235 --ADVLLELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp --HHHHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred --HHHHHHHHHHHHHhhCCCCEEEEccccH
Confidence 3345678888999999999998865543
No 151
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.20 E-value=0.0014 Score=56.79 Aligned_cols=85 Identities=20% Similarity=0.206 Sum_probs=61.4
Q ss_pred CcceEEeecCCce-----------eeeeh-hHHHhhCCCCCceeEEeCCCCcc-CCc--ccEeeHhhhhccCChH-HHHH
Q 043063 160 GVKRLVDVGGSAG-----------INFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDD-ECKL 223 (301)
Q Consensus 160 ~~~~vlDvGgG~g-----------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~-~~~~ 223 (301)
....++|+|||.| ++.|+ -..+..+++.+.......|+... .+. .|..+-..++|+|+-. ...+
T Consensus 45 ~gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~ 124 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRER 124 (293)
T ss_pred CcceeeecccCCcccCcCCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHH
Confidence 3678999999996 45566 34444444444435666777764 443 5999999999998754 4568
Q ss_pred HHHHHHHhCCCCCEEEEeccc
Q 043063 224 IMENCYKAIPAGGKLIACEPV 244 (301)
Q Consensus 224 iL~~~~~aL~pgg~lli~e~~ 244 (301)
+|+++.+.++|||..+|.-.-
T Consensus 125 ~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 125 ALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred HHHHHHHHhcCCCceEEEEeh
Confidence 999999999999987766543
No 152
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.11 E-value=0.0018 Score=56.60 Aligned_cols=89 Identities=19% Similarity=0.346 Sum_probs=58.7
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CCcccEeeHh-
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IPAADAIFMK- 210 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p~~D~v~~~- 210 (301)
..+..+|||+|||+| +.+|. +..++.+++ ..+|++..+|.... .+..|+|++-
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 445679999999995 34676 666655443 25688988886542 2235888751
Q ss_pred -----hhhc-------cCChHHH-------HHHHHHHHHhCCCCCEEEEeccccC
Q 043063 211 -----WVLT-------TWTDDEC-------KLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 211 -----~vlh-------~~~d~~~-------~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
.++. .|+++.. .++|+++.+.|+|||+|+...+...
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 1111 2333322 4699999999999999987776554
No 153
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.09 E-value=0.0044 Score=50.65 Aligned_cols=94 Identities=15% Similarity=0.103 Sum_probs=59.3
Q ss_pred CceeEEeCCCCcc-CCc-ccEeeHhhhhccC-----ChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhh
Q 043063 188 PGVTHIGGDMFKS-IPA-ADAIFMKWVLTTW-----TDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLE 260 (301)
Q Consensus 188 ~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~~-----~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~ 260 (301)
.+++.+..+...- .|+ .|+++....-|++ ....+.++-+.++++|||||.++|.|....... +..
T Consensus 105 aN~e~~~~~~~A~~~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~--~~~------ 176 (238)
T COG4798 105 ANVEVIGKPLVALGAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGS--GLS------ 176 (238)
T ss_pred hhhhhhCCcccccCCCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCC--Chh------
Confidence 4455544444332 344 3777765555543 345678999999999999999999998876542 111
Q ss_pred ccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEE
Q 043063 261 GDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR 297 (301)
Q Consensus 261 ~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~ 297 (301)
|-.. -.-++..-..+..+.+||+..-...
T Consensus 177 -dt~~-------~~ri~~a~V~a~veaaGFkl~aeS~ 205 (238)
T COG4798 177 -DTIT-------LHRIDPAVVIAEVEAAGFKLEAESE 205 (238)
T ss_pred -hhhh-------hcccChHHHHHHHHhhcceeeeeeh
Confidence 1000 1123677778888999998765443
No 154
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=97.08 E-value=0.00043 Score=47.24 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=48.2
Q ss_pred ccccccccccccCC-CC--CCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063 4 NECRDGGKKGRLAN-TP--LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE 69 (301)
Q Consensus 4 ~~a~~lglf~~L~~-g~--~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 69 (301)
....+-.|++.|.. |+ .|+.+||+++|+ +...++++|..|...|+|+.... .++.|+++.
T Consensus 4 ~~~~~~~IL~~L~~~g~~~~ta~eLa~~lgl----~~~~v~r~L~~L~~~G~V~~~~~--~~~~W~i~~ 66 (68)
T smart00550 4 QDSLEEKILEFLENSGDETSTALQLAKNLGL----PKKEVNRVLYSLEKKGKVCKQGG--TPPLWKLTD 66 (68)
T ss_pred chHHHHHHHHHHHHCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCC--CCCceEeec
Confidence 34455677888875 56 999999999999 78899999999999999998631 236788765
No 155
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=97.07 E-value=0.00022 Score=45.89 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=37.7
Q ss_pred cccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 9 GGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 9 lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
+.|++.|.+ ++.|+.|||+++|+ +..-+.|+|..|+..|+++++
T Consensus 6 l~iL~~l~~~~~~~t~~eia~~~gl----~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIARALGL----PKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCcCeecC
Confidence 346777764 56799999999999 789999999999999999986
No 156
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.05 E-value=0.0018 Score=60.76 Aligned_cols=89 Identities=15% Similarity=0.213 Sum_probs=60.0
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CCc-ccEeeH-
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IPA-ADAIFM- 209 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p~-~D~v~~- 209 (301)
..+..+|||+|||+| +.+|+ +..++.+++ ..+|++..+|.... .+. .|.|++
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 556789999999996 35687 666665543 24688999997642 122 488875
Q ss_pred -----hhhhc-------cCChHH-------HHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 210 -----KWVLT-------TWTDDE-------CKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 210 -----~~vlh-------~~~d~~-------~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
..++. .++.++ -.++|.++.+.|+|||.|+...+...
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 12222 222221 25789999999999999887777654
No 157
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.05 E-value=0.00035 Score=60.36 Aligned_cols=90 Identities=18% Similarity=0.148 Sum_probs=59.5
Q ss_pred EEeCCCCcc--------CCc-ccEeeHhhhhccCC--hHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhh
Q 043063 192 HIGGDMFKS--------IPA-ADAIFMKWVLTTWT--DDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLE 260 (301)
Q Consensus 192 ~~~gd~~~~--------~p~-~D~v~~~~vlh~~~--d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~ 260 (301)
++..|+..+ +|. +|+++...+|.... .++-.+.++++.+.|+|||.|++....-... + .
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~----Y------~ 207 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY----Y------M 207 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE----E------E
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee----E------E
Confidence 666788764 233 79999999998643 3567899999999999999999988743211 0 0
Q ss_pred ccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEE
Q 043063 261 GDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLY 296 (301)
Q Consensus 261 ~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~ 296 (301)
..- ..+..-..+++.+++.|+++||.+.+..
T Consensus 208 vG~-----~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 208 VGG-----HKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp ETT-----EEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ECC-----EecccccCCHHHHHHHHHHcCCEEEecc
Confidence 000 0112233589999999999999888776
No 158
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.94 E-value=0.0016 Score=57.24 Aligned_cols=96 Identities=18% Similarity=0.341 Sum_probs=60.3
Q ss_pred HHhhhcCCCCCCcceEEeecCCcee----------------eeeh-hHHHhhCCC----CC--ceeEEeCCCCc---cCC
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAGI----------------NFDL-PEVVAEAPS----IP--GVTHIGGDMFK---SIP 202 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g~----------------~~Dl-p~v~~~a~~----~~--ri~~~~gd~~~---~~p 202 (301)
.++.+..++| .+.+|||+|+|.|+ .+|. +.+.+.++. .. +......++.. +++
T Consensus 23 ~El~~r~p~f-~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 101 (274)
T PF09243_consen 23 SELRKRLPDF-RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP 101 (274)
T ss_pred HHHHHhCcCC-CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC
Confidence 3444444434 35789999999963 4454 445444332 11 11101112221 233
Q ss_pred cccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCC
Q 043063 203 AADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPD 247 (301)
Q Consensus 203 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~ 247 (301)
..|+|+++++|-.++++....+++++-+.+.+ .|+|+|+-.+.
T Consensus 102 ~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 102 PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 45999999999999998788889988777665 89999985553
No 159
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0011 Score=54.75 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=56.8
Q ss_pred CCCcceEEeecCCce-----------------eeeeh-hHHHhhCCC----------------CCceeEEeCCCCccCCc
Q 043063 158 FKGVKRLVDVGGSAG-----------------INFDL-PEVVAEAPS----------------IPGVTHIGGDMFKSIPA 203 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g-----------------~~~Dl-p~v~~~a~~----------------~~ri~~~~gd~~~~~p~ 203 (301)
+.+..++||||+|+| +++|. |++++.+.+ ..++.++.||-..-.+.
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 556789999999994 35676 777766542 36889999998876443
Q ss_pred ---ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063 204 ---ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 204 ---~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
.|.|.+.. .+.++.+++-.-|+|||+++|--
T Consensus 160 ~a~YDaIhvGA--------aa~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 160 QAPYDAIHVGA--------AASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cCCcceEEEcc--------CccccHHHHHHhhccCCeEEEee
Confidence 49887763 23467777888899999998753
No 160
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=96.84 E-value=0.0005 Score=43.21 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=39.2
Q ss_pred ccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceec
Q 043063 8 DGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSE 55 (301)
Q Consensus 8 ~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~ 55 (301)
++.|...|.+||.++.||++.+|+ ++..+.+-|+.|...|+++.
T Consensus 4 R~~Il~~L~~~~~~~~el~~~l~~----s~~~vs~hL~~L~~~glV~~ 47 (47)
T PF01022_consen 4 RLRILKLLSEGPLTVSELAEELGL----SQSTVSHHLKKLREAGLVEK 47 (47)
T ss_dssp HHHHHHHHTTSSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHhCCCchhhHHHhccc----cchHHHHHHHHHHHCcCeeC
Confidence 466788898999999999999999 78999999999999999863
No 161
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.81 E-value=0.0055 Score=48.94 Aligned_cols=96 Identities=22% Similarity=0.348 Sum_probs=72.4
Q ss_pred hHHhhhcCCCCCCcceEEeecCCcee----------------eeeh-hHHHhh-CCCCCceeEEeCCCCcc------CCc
Q 043063 148 MTSILDGYDGFKGVKRLVDVGGSAGI----------------NFDL-PEVVAE-APSIPGVTHIGGDMFKS------IPA 203 (301)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvGgG~g~----------------~~Dl-p~v~~~-a~~~~ri~~~~gd~~~~------~p~ 203 (301)
++.+++..+ +....-|+++|.|+|+ .++. |+-... -+..+.++++.||.+.. .+.
T Consensus 37 A~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~g 115 (194)
T COG3963 37 ARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKG 115 (194)
T ss_pred HHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCC
Confidence 455556665 8888899999999973 2332 333332 23357888999999864 222
Q ss_pred --ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063 204 --ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV 244 (301)
Q Consensus 204 --~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~ 244 (301)
.|.|++.--+-++|-....++|+++..-|++||.++-...-
T Consensus 116 q~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 116 QFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred CeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 49999999999999999999999999999999988877654
No 162
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=0.0014 Score=58.17 Aligned_cols=92 Identities=25% Similarity=0.408 Sum_probs=57.0
Q ss_pred cCCCCCCcceEEeecCCceeee--------ehhH-HHhhCCC--------------CCceeEEeCCCCcc---CCcccEe
Q 043063 154 GYDGFKGVKRLVDVGGSAGINF--------DLPE-VVAEAPS--------------IPGVTHIGGDMFKS---IPAADAI 207 (301)
Q Consensus 154 ~~~~~~~~~~vlDvGgG~g~~~--------Dlp~-v~~~a~~--------------~~ri~~~~gd~~~~---~p~~D~v 207 (301)
..++|+. .+|||||.|.|+++ |+.+ ++-.+.. ..+-..-..|+..+ +|.+|.|
T Consensus 108 ~~~dfap-qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~y 186 (484)
T COG5459 108 RVPDFAP-QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLY 186 (484)
T ss_pred hCCCcCc-chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcccee
Confidence 3344544 56999999998643 3311 1111110 12333344555443 5667888
Q ss_pred eHhhhhccCCh----HHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 208 FMKWVLTTWTD----DECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 208 ~~~~vlh~~~d----~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
.+..++|.+-. .+....++++-..+.|||.|+|+|.-.+
T Consensus 187 tl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 187 TLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred ehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 88777776433 3344489999999999999999998544
No 163
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=96.80 E-value=0.0011 Score=47.87 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=47.0
Q ss_pred cccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 9 GGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 9 lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
+.|++.|.. ++.|+.+||+.+|+ +...+.+.|+.|+..|++.+.+ .++.|++++..
T Consensus 8 ~~Il~~l~~~~~~~t~~~ia~~l~i----~~~tv~r~l~~L~~~g~l~~~~---~~~~y~l~~~~ 65 (91)
T smart00346 8 LAVLRALAEEPGGLTLAELAERLGL----SKSTAHRLLNTLQELGYVEQDG---QNGRYRLGPKV 65 (91)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeecC---CCCceeecHHH
Confidence 456777764 68999999999999 7899999999999999999863 35679998754
No 164
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=96.74 E-value=0.0011 Score=57.36 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=47.1
Q ss_pred cccccccCCCC--CCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 9 GGKKGRLANTP--LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 9 lglf~~L~~g~--~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
+.|++.|..+| +++.|||+++|+ ++.-+.|+|..|+..|++++++ .+++|++++..
T Consensus 7 l~iL~~l~~~~~~l~l~ela~~~gl----pksT~~RlL~tL~~~G~v~~d~---~~g~Y~Lg~~~ 64 (246)
T COG1414 7 LAILDLLAEGPGGLSLAELAERLGL----PKSTVHRLLQTLVELGYVEQDP---EDGRYRLGPRL 64 (246)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEcC---CCCcEeehHHH
Confidence 45677777544 459999999999 7899999999999999999994 35689999865
No 165
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=96.67 E-value=0.0039 Score=54.16 Aligned_cols=77 Identities=12% Similarity=0.209 Sum_probs=48.7
Q ss_pred HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc-CCccc--Ee
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPAAD--AI 207 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~-~p~~D--~v 207 (301)
..+++..+ ..+..+|||||||+| +.+|. +.+++.+++ .++++++.+|+.+. ++..| .+
T Consensus 19 ~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~~~~ 97 (253)
T TIGR00755 19 QKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPKQLK 97 (253)
T ss_pred HHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCCcce
Confidence 34455553 666789999999996 45676 556555442 47899999999875 44434 34
Q ss_pred eHhhhhccCChHHHHHHHHHHHH
Q 043063 208 FMKWVLTTWTDDECKLIMENCYK 230 (301)
Q Consensus 208 ~~~~vlh~~~d~~~~~iL~~~~~ 230 (301)
++++.-++++. .++.++..
T Consensus 98 vvsNlPy~i~~----~il~~ll~ 116 (253)
T TIGR00755 98 VVSNLPYNISS----PLIFKLLE 116 (253)
T ss_pred EEEcCChhhHH----HHHHHHhc
Confidence 44454444444 55555554
No 166
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.66 E-value=0.012 Score=52.33 Aligned_cols=133 Identities=13% Similarity=0.105 Sum_probs=86.5
Q ss_pred CcceEEeecCCc-----------e-eee--ehhHHHhhCCC---------CCceeEEeCCCCcc-CCc-----c------
Q 043063 160 GVKRLVDVGGSA-----------G-INF--DLPEVVAEAPS---------IPGVTHIGGDMFKS-IPA-----A------ 204 (301)
Q Consensus 160 ~~~~vlDvGgG~-----------g-~~~--Dlp~v~~~a~~---------~~ri~~~~gd~~~~-~p~-----~------ 204 (301)
+...||-+|||- + .+| |+|+|++-=++ ..++++++.|++++ +|. +
T Consensus 92 g~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~p 171 (297)
T COG3315 92 GIRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRP 171 (297)
T ss_pred cccEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCC
Confidence 468999999998 2 344 77999875221 24899999999954 442 1
Q ss_pred cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCC-Ch-HHh-hhhhhccHHHHhhhhccccccCHHHH
Q 043063 205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSN-ES-QRT-RALLEGDIFVMTIYRAKGKHMTEQEF 281 (301)
Q Consensus 205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~-~~-~~~-~~~~~~d~~m~~~~~~~g~~rt~~e~ 281 (301)
-++++-.+|-+++.+.+.++|+++.....||+.++........... .. +.. ......++... ...-......++
T Consensus 172 t~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---e~~~~~~~~~e~ 248 (297)
T COG3315 172 TLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRG---ELVYFGDDPAEI 248 (297)
T ss_pred eEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccc---cceeccCCHHHH
Confidence 4889999999999999999999999999999887766541111100 00 000 00000000000 000112368999
Q ss_pred HHHHHhCCCCceEE
Q 043063 282 KQLGFSAGFPHLRL 295 (301)
Q Consensus 282 ~~~l~~aGf~~~~~ 295 (301)
..++.+.||.....
T Consensus 249 ~~~l~~~g~~~~~~ 262 (297)
T COG3315 249 ETWLAERGWRSTLN 262 (297)
T ss_pred HHHHHhcCEEEEec
Confidence 99999999987765
No 167
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=96.63 E-value=0.0012 Score=46.23 Aligned_cols=57 Identities=23% Similarity=0.348 Sum_probs=44.4
Q ss_pred ccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063 10 GKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV 75 (301)
Q Consensus 10 glf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 75 (301)
.|+..|..++.+..+|+..+++ +...+.+.|+.|...|++... ++.|.+|+.+..+.
T Consensus 10 ~IL~~l~~~~~~~t~i~~~~~L----~~~~~~~yL~~L~~~gLI~~~-----~~~Y~lTekG~~~l 66 (77)
T PF14947_consen 10 DILKILSKGGAKKTEIMYKANL----NYSTLKKYLKELEEKGLIKKK-----DGKYRLTEKGKEFL 66 (77)
T ss_dssp HHHHHH-TT-B-HHHHHTTST------HHHHHHHHHHHHHTTSEEEE-----TTEEEE-HHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHhCc----CHHHHHHHHHHHHHCcCeeCC-----CCEEEECccHHHHH
Confidence 4556665789999999999999 899999999999999999775 78999999997654
No 168
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=96.61 E-value=0.0019 Score=56.30 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=47.6
Q ss_pred cccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063 9 GGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK 72 (301)
Q Consensus 9 lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~ 72 (301)
+.|++.|.. ++.|+.|||+++|+ ++.-+.|+|+.|+..|++.++. ..++|++++..-
T Consensus 17 l~IL~~l~~~~~l~l~eia~~lgl----~kstv~Rll~tL~~~G~l~~~~---~~~~Y~lG~~~~ 74 (257)
T PRK15090 17 FGILQALGEEREIGITELSQRVMM----SKSTVYRFLQTMKTLGYVAQEG---ESEKYSLTLKLF 74 (257)
T ss_pred HHHHHHhhcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC---CCCcEEecHHHH
Confidence 346666664 67999999999999 7889999999999999999873 357899998653
No 169
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=96.60 E-value=0.0041 Score=54.84 Aligned_cols=78 Identities=26% Similarity=0.423 Sum_probs=50.8
Q ss_pred eEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC-cccEeeHhhh-------
Q 043063 163 RLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP-AADAIFMKWV------- 212 (301)
Q Consensus 163 ~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p-~~D~v~~~~v------- 212 (301)
+|||||||+| +..|+ |..++.|++ ..++.++.+|.|+.++ ..|+|+++==
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 8999999996 35687 777776654 1567777779988754 3577776421
Q ss_pred ------hcc------CC--h--HHHHHHHHHHHHhCCCCCEEEE
Q 043063 213 ------LTT------WT--D--DECKLIMENCYKAIPAGGKLIA 240 (301)
Q Consensus 213 ------lh~------~~--d--~~~~~iL~~~~~aL~pgg~lli 240 (301)
+.+ +. | +-..++++.+.+.|+|||.+++
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l 236 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL 236 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE
Confidence 100 01 1 2355778888888888665543
No 170
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=96.55 E-value=0.0033 Score=54.17 Aligned_cols=89 Identities=20% Similarity=0.357 Sum_probs=60.2
Q ss_pred HhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CC--
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IP-- 202 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p-- 202 (301)
.++-.++ ..+..+||+-|.|+| .-||. ++..+.|++ .++|++..+|+.++ ++
T Consensus 31 ~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 31 YILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 3455564 888999999999995 23565 555555543 36899999999765 53
Q ss_pred ---cccEeeHhhhhccCChHHHHHHHHHHHHhC-CCCCEEEEeccccC
Q 043063 203 ---AADAIFMKWVLTTWTDDECKLIMENCYKAI-PAGGKLIACEPVLP 246 (301)
Q Consensus 203 ---~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL-~pgg~lli~e~~~~ 246 (301)
..|.|++ |+|++. ..+..+.++| +|||++.+.-++++
T Consensus 110 ~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~gG~i~~fsP~ie 150 (247)
T PF08704_consen 110 LESDFDAVFL-----DLPDPW--EAIPHAKRALKKPGGRICCFSPCIE 150 (247)
T ss_dssp -TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EEEEEEEEEESSHH
T ss_pred ccCcccEEEE-----eCCCHH--HHHHHHHHHHhcCCceEEEECCCHH
Confidence 2487654 788875 7899999999 89999998887664
No 171
>PLN02823 spermine synthase
Probab=96.54 E-value=0.0036 Score=56.56 Aligned_cols=81 Identities=20% Similarity=0.174 Sum_probs=57.1
Q ss_pred CcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCccC---Cc-ccEeeH
Q 043063 160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-ADAIFM 209 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~~---p~-~D~v~~ 209 (301)
++++||.||||.| +++|+ |.+++.+++ .+|++++.+|.+.-+ +. .|+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 5689999999985 45687 788877763 379999999988653 22 599887
Q ss_pred hhhhccCCh--H---HHHHHHH-HHHHhCCCCCEEEEe
Q 043063 210 KWVLTTWTD--D---ECKLIME-NCYKAIPAGGKLIAC 241 (301)
Q Consensus 210 ~~vlh~~~d--~---~~~~iL~-~~~~aL~pgg~lli~ 241 (301)
-. ...+.. . -...+++ .+++.|+|||.+++.
T Consensus 183 D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 52 111110 0 1246787 889999999987764
No 172
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=96.51 E-value=0.0022 Score=55.53 Aligned_cols=55 Identities=15% Similarity=0.080 Sum_probs=47.3
Q ss_pred cccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063 9 GGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK 72 (301)
Q Consensus 9 lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~ 72 (301)
+.|++.|.. ++.|+.|||+++|+ ++.-+.|+|..|+..|+|+++ +++|++++...
T Consensus 12 l~IL~~l~~~~~~~~l~eia~~lgl----pksT~~RlL~tL~~~G~l~~~-----~~~Y~lG~~~~ 68 (248)
T TIGR02431 12 LAVIEAFGAERPRLTLTDVAEATGL----TRAAARRFLLTLVELGYVTSD-----GRLFWLTPRVL 68 (248)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC-----CCEEEecHHHH
Confidence 456777763 68999999999999 788999999999999999987 67899998653
No 173
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=96.41 E-value=0.0062 Score=53.10 Aligned_cols=67 Identities=16% Similarity=0.269 Sum_probs=45.3
Q ss_pred HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc-CCcccEeeH
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPAADAIFM 209 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~-~p~~D~v~~ 209 (301)
..+++..+ ..+..+|||||||+| +++|. +.+++.+++ .++++++.+|+.+. +|..|.|+.
T Consensus 19 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~Vv~ 97 (258)
T PRK14896 19 DRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNKVVS 97 (258)
T ss_pred HHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceEEEE
Confidence 34445553 556789999999996 46777 566655543 46899999999874 565677765
Q ss_pred hhhhccCC
Q 043063 210 KWVLTTWT 217 (301)
Q Consensus 210 ~~vlh~~~ 217 (301)
+-- ++.+
T Consensus 98 NlP-y~i~ 104 (258)
T PRK14896 98 NLP-YQIS 104 (258)
T ss_pred cCC-cccC
Confidence 433 3444
No 174
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=96.39 E-value=0.0054 Score=54.46 Aligned_cols=75 Identities=21% Similarity=0.338 Sum_probs=49.3
Q ss_pred HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCcccE
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPAADA 206 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~~D~ 206 (301)
..+++..+ ..+..+|||||||.| +.+|+ +.+++.+++ .++++++.+|+.+. .+..|+
T Consensus 26 ~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~~d~ 104 (294)
T PTZ00338 26 DKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPYFDV 104 (294)
T ss_pred HHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccccCE
Confidence 34555553 666789999999996 46777 666665442 36899999999864 555576
Q ss_pred eeHhhhhccCChHHHHHHH
Q 043063 207 IFMKWVLTTWTDDECKLIM 225 (301)
Q Consensus 207 v~~~~vlh~~~d~~~~~iL 225 (301)
++. +.-++++.+...++|
T Consensus 105 Vva-NlPY~Istpil~~ll 122 (294)
T PTZ00338 105 CVA-NVPYQISSPLVFKLL 122 (294)
T ss_pred EEe-cCCcccCcHHHHHHH
Confidence 553 444455555444444
No 175
>PLN02672 methionine S-methyltransferase
Probab=96.39 E-value=0.008 Score=61.86 Aligned_cols=49 Identities=22% Similarity=0.292 Sum_probs=34.6
Q ss_pred cceEEeecCCce---------------eeeeh-hHHHhhCCC----------------------CCceeEEeCCCCccCC
Q 043063 161 VKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------------------IPGVTHIGGDMFKSIP 202 (301)
Q Consensus 161 ~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------------------~~ri~~~~gd~~~~~p 202 (301)
..+|||||||+| +.+|+ |..++.|++ .+||+|+.+|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 358999999995 45687 666655521 1489999999987643
Q ss_pred c----ccEeeH
Q 043063 203 A----ADAIFM 209 (301)
Q Consensus 203 ~----~D~v~~ 209 (301)
. .|+|+.
T Consensus 199 ~~~~~fDlIVS 209 (1082)
T PLN02672 199 DNNIELDRIVG 209 (1082)
T ss_pred ccCCceEEEEE
Confidence 1 376654
No 176
>PHA03412 putative methyltransferase; Provisional
Probab=96.39 E-value=0.0065 Score=51.79 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=53.5
Q ss_pred cceEEeecCCce------------------eeeeh-hHHHhhCCC-CCceeEEeCCCCcc-CC-cccEeeHhhhhccCC-
Q 043063 161 VKRLVDVGGSAG------------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKS-IP-AADAIFMKWVLTTWT- 217 (301)
Q Consensus 161 ~~~vlDvGgG~g------------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~-~p-~~D~v~~~~vlh~~~- 217 (301)
..+|||+|||+| +.+|+ +.+++.+++ ..++.++.+|+... .. ..|+|+.+==.+...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 469999999996 23465 556666654 36789999999754 33 259988876555322
Q ss_pred -h--------HHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063 218 -D--------DECKLIMENCYKAIPAGGKLIACEPV 244 (301)
Q Consensus 218 -d--------~~~~~iL~~~~~aL~pgg~lli~e~~ 244 (301)
+ .-...+++++.+.++||+ +++--..
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~ILP~~~ 164 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGT-FIIPQMS 164 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCE-EEeCccc
Confidence 1 113468999998555554 5443333
No 177
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=96.37 E-value=0.0074 Score=54.10 Aligned_cols=131 Identities=14% Similarity=0.117 Sum_probs=74.8
Q ss_pred CcceEEeecCCce---------------eeeeh-hHHHhhCCC--------CCceeEEe----CCCCccC--Cc--ccEe
Q 043063 160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS--------IPGVTHIG----GDMFKSI--PA--ADAI 207 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~--------~~ri~~~~----gd~~~~~--p~--~D~v 207 (301)
...++||||||+| +..|+ |..++.|++ .+||++.. .+++..+ +. .|+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 3578999999984 45677 666666543 25787754 3444432 22 4999
Q ss_pred eHhhhhccCChHH---HHHHHHHHH----------------HhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhh
Q 043063 208 FMKWVLTTWTDDE---CKLIMENCY----------------KAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI 268 (301)
Q Consensus 208 ~~~~vlh~~~d~~---~~~iL~~~~----------------~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~ 268 (301)
++.==+|.-.++. ..+-.++.. +.+.+||.+-++..+..+.. .......+-..|
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~----~~~~~~gwftsm--- 266 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESK----AFAKQVLWFTSL--- 266 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHH----HHHhhCcEEEEE---
Confidence 9998887544432 112222221 22335555544444443321 000000111111
Q ss_pred hhccccccCHHHHHHHHHhCCCCceEEEEccC
Q 043063 269 YRAKGKHMTEQEFKQLGFSAGFPHLRLYRVLD 300 (301)
Q Consensus 269 ~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~~ 300 (301)
=|+.-+...+.+.|++.|.+.+++..+.-
T Consensus 267 ---v~kk~~l~~l~~~L~~~~~~~~~~~e~~q 295 (321)
T PRK11727 267 ---VSKKENLPPLYRALKKVGAVEVKTIEMAQ 295 (321)
T ss_pred ---eeccCCHHHHHHHHHHcCCceEEEEEEeC
Confidence 25666999999999999998888877643
No 178
>PRK11569 transcriptional repressor IclR; Provisional
Probab=96.33 E-value=0.0032 Score=55.37 Aligned_cols=57 Identities=7% Similarity=0.052 Sum_probs=48.0
Q ss_pred cccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063 9 GGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK 72 (301)
Q Consensus 9 lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~ 72 (301)
+.|++.|.+ ++.|+.|||+++|+ ++.-+.|+|..|+..|+|.++. ..++|++++...
T Consensus 31 l~IL~~l~~~~~~~~lseia~~lgl----pksTv~RlL~tL~~~G~l~~~~---~~~~Y~lG~~l~ 89 (274)
T PRK11569 31 LKLLEWIAESNGSVALTELAQQAGL----PNSTTHRLLTTMQQQGFVRQVG---ELGHWAIGAHAF 89 (274)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC---CCCeEecCHHHH
Confidence 456777764 67999999999999 7889999999999999999873 357899988653
No 179
>PLN02476 O-methyltransferase
Probab=96.32 E-value=0.007 Score=53.05 Aligned_cols=84 Identities=17% Similarity=0.193 Sum_probs=60.2
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC---------cc
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP---------AA 204 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p---------~~ 204 (301)
..+.++|||||+++| +-+|. |+..+.|++ .++|+++.||..+.++ ..
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 446789999999995 34576 555555543 4799999999876422 24
Q ss_pred cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
|+||+=. +...-...++.+.+.|+|||.|++-+....
T Consensus 196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~ 232 (278)
T PLN02476 196 DFAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDNVLWH 232 (278)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEecCccC
Confidence 8776643 445567889999999999998776655544
No 180
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=96.32 E-value=0.026 Score=49.21 Aligned_cols=132 Identities=17% Similarity=0.171 Sum_probs=84.0
Q ss_pred CCcceEEeecCCc-----------e-eee--ehhHHHhhCC---------CCCceeEEeCCCCccCC----------c-c
Q 043063 159 KGVKRLVDVGGSA-----------G-INF--DLPEVVAEAP---------SIPGVTHIGGDMFKSIP----------A-A 204 (301)
Q Consensus 159 ~~~~~vlDvGgG~-----------g-~~~--Dlp~v~~~a~---------~~~ri~~~~gd~~~~~p----------~-~ 204 (301)
.+...||.+|||. + .+| |+|++++.-+ ...+..+++.|+...+. . .
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 3466899999999 1 233 6798876422 24789999999973321 1 1
Q ss_pred cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhh-hhhhccHH--HHhhhhccccccCHHHH
Q 043063 205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTR-ALLEGDIF--VMTIYRAKGKHMTEQEF 281 (301)
Q Consensus 205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~-~~~~~d~~--m~~~~~~~g~~rt~~e~ 281 (301)
-++++-.++.+++.+++.++|+.+.+...||+.|+ .|.+.+-... .... ........ ...-....+ .+.+++
T Consensus 160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~-~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 234 (260)
T TIGR00027 160 TAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLA-FDYVRPLDGE--WRAGMRAPVYHAARGVDGSGLVFG--IDRADV 234 (260)
T ss_pred eeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEE-EEeccccchh--HHHHHHHHHHHhhhcccccccccC--CChhhH
Confidence 48888999999999999999999998877887655 5655542211 0100 00000000 000000111 368999
Q ss_pred HHHHHhCCCCceEE
Q 043063 282 KQLGFSAGFPHLRL 295 (301)
Q Consensus 282 ~~~l~~aGf~~~~~ 295 (301)
.++|++.||+....
T Consensus 235 ~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 235 AEWLAERGWRASEH 248 (260)
T ss_pred HHHHHHCCCeeecC
Confidence 99999999998765
No 181
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=96.28 E-value=0.0014 Score=43.62 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=41.7
Q ss_pred ccccccccc-CCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 7 RDGGKKGRL-ANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 7 ~~lglf~~L-~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
.++.|++.| ..+|.|+.+||+.+|+ ++..+.+-|+.|...|+|+..+
T Consensus 11 ~R~~Il~~L~~~~~~t~~ela~~l~~----~~~t~s~hL~~L~~aGli~~~~ 58 (61)
T PF12840_consen 11 TRLRILRLLASNGPMTVSELAEELGI----SQSTVSYHLKKLEEAGLIEVER 58 (61)
T ss_dssp HHHHHHHHHHHCSTBEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEec
Confidence 567889999 6689999999999999 7889999999999999999773
No 182
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=96.26 E-value=0.0061 Score=43.26 Aligned_cols=49 Identities=27% Similarity=0.425 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK 72 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~ 72 (301)
++.|.++||+++++ ++..+++++..|...|+++..+ |.+|.|.++.-.+
T Consensus 24 ~~~s~~eiA~~~~i----~~~~l~kil~~L~~~Gli~s~~--G~~GGy~L~~~~~ 72 (83)
T PF02082_consen 24 KPVSSKEIAERLGI----SPSYLRKILQKLKKAGLIESSR--GRGGGYRLARPPE 72 (83)
T ss_dssp C-BEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEET--STTSEEEESS-CC
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHhhCCeeEecC--CCCCceeecCCHH
Confidence 46899999999999 8999999999999999998764 2457899987543
No 183
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.25 E-value=0.04 Score=46.97 Aligned_cols=131 Identities=15% Similarity=0.174 Sum_probs=70.1
Q ss_pred HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHh-hCCCCCceeEEe-CCCCc----cC----Cc
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVA-EAPSIPGVTHIG-GDMFK----SI----PA 203 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~-~a~~~~ri~~~~-gd~~~----~~----p~ 203 (301)
..+++.+.......++||+|||+| +.+|. +.++. ..++.+|+.... .|+.. ++ +.
T Consensus 64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~ 143 (228)
T TIGR00478 64 KEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFAT 143 (228)
T ss_pred HHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCcee
Confidence 344444431124578999999996 45687 43443 455556654322 34431 12 22
Q ss_pred ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHH
Q 043063 204 ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQ 283 (301)
Q Consensus 204 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~ 283 (301)
.|+.+++..+ +|..+.++|+|+-.++++-+-.+-.+. ....-.-..|-. ...+-.+++..
T Consensus 144 ~DvsfiS~~~----------~l~~i~~~l~~~~~~~L~KPqFE~~~~--~~~~~giv~~~~--------~~~~~~~~~~~ 203 (228)
T TIGR00478 144 FDVSFISLIS----------ILPELDLLLNPNDLTLLFKPQFEAGRE--KKNKKGVVRDKE--------AIALALHKVID 203 (228)
T ss_pred eeEEEeehHh----------HHHHHHHHhCcCeEEEEcChHhhhcHh--hcCcCCeecCHH--------HHHHHHHHHHH
Confidence 4888877654 477788889993234444433322110 000000011110 11124667777
Q ss_pred HHHhCCCCceEEEEcc
Q 043063 284 LGFSAGFPHLRLYRVL 299 (301)
Q Consensus 284 ~l~~aGf~~~~~~~~~ 299 (301)
.+.+.||++..+.+.+
T Consensus 204 ~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 204 KGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHcCCCeEeeEEECC
Confidence 8888999999888765
No 184
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=96.25 E-value=0.0088 Score=37.25 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=36.5
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT 68 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 68 (301)
+.|..+||+.+|+ ....+.+.|+.|...|++... .+.|.++
T Consensus 8 ~~s~~~la~~l~~----s~~tv~~~l~~L~~~g~l~~~-----~~~~~i~ 48 (48)
T smart00419 8 PLTRQEIAELLGL----TRETVSRTLKRLEKEGLISRE-----GGRIVIL 48 (48)
T ss_pred ccCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe-----CCEEEEC
Confidence 6899999999999 788999999999999999987 5677754
No 185
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.22 E-value=0.0051 Score=61.27 Aligned_cols=82 Identities=15% Similarity=0.196 Sum_probs=56.7
Q ss_pred CcceEEeecCCce--------------eeeeh-hHHHhhCCC-------C-CceeEEeCCCCccC---Cc-ccEeeHhhh
Q 043063 160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------I-PGVTHIGGDMFKSI---PA-ADAIFMKWV 212 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~-~ri~~~~gd~~~~~---p~-~D~v~~~~v 212 (301)
...+|||+|||+| +.+|. +..++.+++ . ++++++.+|+++.+ +. .|+|++---
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 4579999999995 45787 677766653 1 48999999988642 22 599987310
Q ss_pred h--------ccC-ChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063 213 L--------TTW-TDDECKLIMENCYKAIPAGGKLIAC 241 (301)
Q Consensus 213 l--------h~~-~d~~~~~iL~~~~~aL~pgg~lli~ 241 (301)
- ..+ ....-..+++.+.+.|+|||.+++.
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 0 001 0122457889999999999988765
No 186
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=96.22 E-value=0.0071 Score=55.97 Aligned_cols=83 Identities=20% Similarity=0.216 Sum_probs=56.7
Q ss_pred CcceEEeecCCce--------------eeeeh-hHHHhhCCC------C--CceeEEeCCCCccC------C-cccEeeH
Q 043063 160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS------I--PGVTHIGGDMFKSI------P-AADAIFM 209 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~------~--~ri~~~~gd~~~~~------p-~~D~v~~ 209 (301)
...+|||+|||+| +.+|. +..++.+++ . ++++++.+|+++.+ . ..|+|++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 4679999999995 45787 666666543 1 47999999998742 1 2499986
Q ss_pred hhhhccCCh--------HHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 210 KWVLTTWTD--------DECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 210 ~~vlh~~~d--------~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
.--- .-.. ..-..+++.+.+.|+|||.|+.+.+
T Consensus 300 DPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 300 DPPK-FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCC-CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 5221 1111 1234566778899999999998764
No 187
>PRK04148 hypothetical protein; Provisional
Probab=96.21 E-value=0.012 Score=45.55 Aligned_cols=84 Identities=21% Similarity=0.239 Sum_probs=54.8
Q ss_pred hhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCCCCceeEEeCCCCccCC----cccEeeHhh
Q 043063 151 ILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPSIPGVTHIGGDMFKSIP----AADAIFMKW 211 (301)
Q Consensus 151 ~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~~p----~~D~v~~~~ 211 (301)
+.+.+. -....+++|||||+| +.+|. |..++.+++ ..++++.+|+|++-+ .+|+|...+
T Consensus 8 l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liysir 85 (134)
T PRK04148 8 IAENYE-KGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIYSIR 85 (134)
T ss_pred HHHhcc-cccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence 444443 223478999999996 45687 676666643 357999999998733 258887766
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 212 VLTTWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 212 vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
|..+.+.-+.++++..+ .-++|...
T Consensus 86 -----pp~el~~~~~~la~~~~--~~~~i~~l 110 (134)
T PRK04148 86 -----PPRDLQPFILELAKKIN--VPLIIKPL 110 (134)
T ss_pred -----CCHHHHHHHHHHHHHcC--CCEEEEcC
Confidence 55566666666766543 34555443
No 188
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=96.20 E-value=0.0041 Score=54.65 Aligned_cols=56 Identities=13% Similarity=-0.038 Sum_probs=47.3
Q ss_pred cccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 9 GGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 9 lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
+.|++.|.. ++.|+.|||+++|+ ++..+.|+|..|+..|+|.++. ..+.|+++...
T Consensus 28 l~IL~~~~~~~~~~tl~eIa~~lgl----pkStv~RlL~tL~~~G~l~~~~---~~~~Y~lG~~l 85 (271)
T PRK10163 28 IAILQYLEKSGGSSSVSDISLNLDL----PLSTTFRLLKVLQAADFVYQDS---QLGWWHIGLGV 85 (271)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC---CCCeEEecHHH
Confidence 456777764 57899999999999 7899999999999999998873 36789998854
No 189
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=96.19 E-value=0.0057 Score=51.09 Aligned_cols=81 Identities=6% Similarity=0.020 Sum_probs=50.1
Q ss_pred CcceEEeecCCce--------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC--c--ccEeeHhhhhc
Q 043063 160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP--A--ADAIFMKWVLT 214 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p--~--~D~v~~~~vlh 214 (301)
...++||+|||+| +.+|. +..++.+++ ..+++++.+|+++.++ . .|+|++.=-.+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 3468999999995 35575 555554443 2579999999876432 2 59888765532
Q ss_pred cCChHHHHHHHHHHHH--hCCCCCEEEEecc
Q 043063 215 TWTDDECKLIMENCYK--AIPAGGKLIACEP 243 (301)
Q Consensus 215 ~~~d~~~~~iL~~~~~--aL~pgg~lli~e~ 243 (301)
.- -...+++.+.+ .|.|++.++|-..
T Consensus 133 ~g---~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 133 KG---LLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CC---hHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 21 12344454444 3788776555433
No 190
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=96.11 E-value=0.0075 Score=49.23 Aligned_cols=86 Identities=19% Similarity=0.179 Sum_probs=50.9
Q ss_pred CCcceEEeecCCce---------------eeeehhHHHhhCC---------CCCceeEEeCCCCcc-----C-C-cccEe
Q 043063 159 KGVKRLVDVGGSAG---------------INFDLPEVVAEAP---------SIPGVTHIGGDMFKS-----I-P-AADAI 207 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~---------~~~ri~~~~gd~~~~-----~-p-~~D~v 207 (301)
....+||++|||+| +.=|.+++++..+ ...++++...|.-++ . + ..|+|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 34679999999996 1227665554432 136788888876553 1 2 25999
Q ss_pred eHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 208 FMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 208 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
+.+-++++ ++....+++.+.+.|+|+|.+++......
T Consensus 124 lasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~R~ 160 (173)
T PF10294_consen 124 LASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKRRR 160 (173)
T ss_dssp EEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-S-
T ss_pred EEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCEec
Confidence 99999974 56678999999999999988777776553
No 191
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.11 E-value=0.011 Score=52.13 Aligned_cols=82 Identities=23% Similarity=0.283 Sum_probs=61.0
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCcc---CCc-ccEee
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKS---IPA-ADAIF 208 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~---~p~-~D~v~ 208 (301)
++.++||-||||.| +..|+ |.|++.+++ .+|++++.+|.++- .+. .|+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 34579999999996 56788 888888764 38999999998865 333 59887
Q ss_pred HhhhhccCChH---HHHHHHHHHHHhCCCCCEEEEe
Q 043063 209 MKWVLTTWTDD---ECKLIMENCYKAIPAGGKLIAC 241 (301)
Q Consensus 209 ~~~vlh~~~d~---~~~~iL~~~~~aL~pgg~lli~ 241 (301)
+=..=. .... -...+++.++++|+++|.++..
T Consensus 155 ~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 155 VDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 654322 1110 1258999999999999998888
No 192
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=96.05 E-value=0.014 Score=55.02 Aligned_cols=77 Identities=13% Similarity=0.152 Sum_probs=49.7
Q ss_pred CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccC-----C-c-ccEeeHh
Q 043063 158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSI-----P-A-ADAIFMK 210 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~-----p-~-~D~v~~~ 210 (301)
..+..+|||+|||+| +.+|. +.+++.|++ .++++|+.+|+.+.+ + . .|+|++.
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 445679999999996 46787 777777654 257999999986532 1 2 4888652
Q ss_pred hhhccCChHHHHHHHHHHHHhCCCCCEEEE
Q 043063 211 WVLTTWTDDECKLIMENCYKAIPAGGKLIA 240 (301)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli 240 (301)
=|......+++.+.+ ++|++.++|
T Consensus 375 -----PPr~g~~~~~~~l~~-~~~~~ivyv 398 (443)
T PRK13168 375 -----PPRAGAAEVMQALAK-LGPKRIVYV 398 (443)
T ss_pred -----cCCcChHHHHHHHHh-cCCCeEEEE
Confidence 222223355555554 677765444
No 193
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=96.04 E-value=0.0076 Score=53.75 Aligned_cols=79 Identities=22% Similarity=0.290 Sum_probs=54.9
Q ss_pred cceEEeecCCcee--------------eeehhHHHhhCCC-------CCceeEEeCCCCcc-CC-c-ccEeeHhhhhccC
Q 043063 161 VKRLVDVGGSAGI--------------NFDLPEVVAEAPS-------IPGVTHIGGDMFKS-IP-A-ADAIFMKWVLTTW 216 (301)
Q Consensus 161 ~~~vlDvGgG~g~--------------~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~-~p-~-~D~v~~~~vlh~~ 216 (301)
.++|||||||+|+ .+|-.++++.+.+ .+.|++..|.+.+- +| . .|+|+.-++=+.+
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~L 140 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFL 140 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHH
Confidence 4799999999973 4566666655543 36799999988764 77 3 4999877766553
Q ss_pred C-hHHHHHHHHHHHHhCCCCCEEE
Q 043063 217 T-DDECKLIMENCYKAIPAGGKLI 239 (301)
Q Consensus 217 ~-d~~~~~iL~~~~~aL~pgg~ll 239 (301)
- +.....+|-.==+.|+|||.++
T Consensus 141 l~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 141 LYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHhhhhhhhhhhhhhccCCCceEc
Confidence 2 3344455555557899999765
No 194
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=96.03 E-value=0.013 Score=39.45 Aligned_cols=45 Identities=27% Similarity=0.428 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063 17 NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE 69 (301)
Q Consensus 17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 69 (301)
.++.|..+||+.+|+ .+..+.+.|+.|...|++... ..+.|.+++
T Consensus 23 ~~~~s~~ela~~~g~----s~~tv~r~l~~L~~~g~i~~~----~~~~~~l~~ 67 (67)
T cd00092 23 QLPLTRQEIADYLGL----TRETVSRTLKELEEEGLISRR----GRGKYRVNP 67 (67)
T ss_pred cCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec----CCCeEEeCC
Confidence 368999999999999 789999999999999999988 237888764
No 195
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=96.02 E-value=0.0075 Score=52.98 Aligned_cols=50 Identities=18% Similarity=0.303 Sum_probs=36.9
Q ss_pred HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC---CCceeEEeCCCCcc
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS---IPGVTHIGGDMFKS 200 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~---~~ri~~~~gd~~~~ 200 (301)
.+++.++ .....+|||||||+| +++|. +.+++.+++ .++++++.+|+.+.
T Consensus 33 ~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~ 99 (272)
T PRK00274 33 KIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKV 99 (272)
T ss_pred HHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEEChhhcC
Confidence 3444453 666789999999996 56787 777776654 26899999998764
No 196
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=95.98 E-value=0.0057 Score=53.49 Aligned_cols=59 Identities=14% Similarity=0.079 Sum_probs=48.5
Q ss_pred cccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhh
Q 043063 9 GGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSL 74 (301)
Q Consensus 9 lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l 74 (301)
+.|++.|.. ++.|+.|||+.+|+ ++..+.|+|+.|+..|++.+++ .++.|++++....+
T Consensus 14 l~iL~~l~~~~~~ls~~eia~~lgl----~kstv~RlL~tL~~~g~v~~~~---~~~~Y~Lg~~~~~l 74 (263)
T PRK09834 14 LMVLRALNRLDGGATVGLLAELTGL----HRTTVRRLLETLQEEGYVRRSA---SDDSFRLTLKVRQL 74 (263)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEec---CCCcEEEcHHHHHH
Confidence 456677753 46999999999999 8899999999999999999874 35789999866444
No 197
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.95 E-value=0.0029 Score=59.01 Aligned_cols=46 Identities=17% Similarity=0.459 Sum_probs=38.3
Q ss_pred cCCc-c-cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 200 SIPA-A-DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 200 ~~p~-~-D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
++|. + |+|.|++++..|.+.+ ..+|-.+-+.|+|||.+++.-+-..
T Consensus 176 Pfp~~~fDmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 176 PFPSNAFDMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred cCCccchhhhhcccccccchhcc-cceeehhhhhhccCceEEecCCccc
Confidence 4665 3 9999999999998876 3688889999999999888776554
No 198
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=95.95 E-value=0.031 Score=47.07 Aligned_cols=125 Identities=22% Similarity=0.244 Sum_probs=74.8
Q ss_pred cceEEeecCCce--------------eeeeh-hHHHhhCCCC--Cce--eEEeCCCCc-cCCc--ccEeeHhhhhccCCh
Q 043063 161 VKRLVDVGGSAG--------------INFDL-PEVVAEAPSI--PGV--THIGGDMFK-SIPA--ADAIFMKWVLTTWTD 218 (301)
Q Consensus 161 ~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~--~ri--~~~~gd~~~-~~p~--~D~v~~~~vlh~~~d 218 (301)
...++||||+.| +..|. -.+++.++.. +.| ....+|-.. ++.+ .|+++.+..+|-.+|
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~Nd 152 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTND 152 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhcc
Confidence 468999999996 34465 5667666542 333 334454221 2333 399999999985554
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhcccccc------CHHHHHHHHHhCCCCc
Q 043063 219 DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHM------TEQEFKQLGFSAGFPH 292 (301)
Q Consensus 219 ~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~r------t~~e~~~~l~~aGf~~ 292 (301)
...-+.+|+.+|||+|.++- .+...+ . ..+.....-+.-+- ..+|... ...++..+|..|||..
T Consensus 153 --LPg~m~~ck~~lKPDg~Fia--smlggd--T--LyELR~slqLAelE--R~GGiSphiSPf~qvrDiG~LL~rAGF~m 222 (325)
T KOG2940|consen 153 --LPGSMIQCKLALKPDGLFIA--SMLGGD--T--LYELRCSLQLAELE--REGGISPHISPFTQVRDIGNLLTRAGFSM 222 (325)
T ss_pred --CchHHHHHHHhcCCCccchh--HHhccc--c--HHHHHHHhhHHHHH--hccCCCCCcChhhhhhhhhhHHhhcCccc
Confidence 35778889999999996652 222211 1 22222233322221 2334332 3567788999999987
Q ss_pred eEE
Q 043063 293 LRL 295 (301)
Q Consensus 293 ~~~ 295 (301)
..+
T Consensus 223 ~tv 225 (325)
T KOG2940|consen 223 LTV 225 (325)
T ss_pred cee
Confidence 654
No 199
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=95.88 E-value=0.0055 Score=41.45 Aligned_cols=57 Identities=25% Similarity=0.430 Sum_probs=40.7
Q ss_pred cccccC--CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhc
Q 043063 11 KKGRLA--NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIG 71 (301)
Q Consensus 11 lf~~L~--~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s 71 (301)
++..|. .++.|..+|++.+++ +...+.+.++.|...|+|++.+.. +....|++|+.+
T Consensus 8 vL~~l~~~~~~~t~~~l~~~~~~----~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G 68 (68)
T PF13463_consen 8 VLRALAHSDGPMTQSDLAERLGI----SKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG 68 (68)
T ss_dssp HHHHHT--TS-BEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred HHHHHHccCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence 444555 488999999999999 899999999999999999776422 111358888753
No 200
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=95.83 E-value=0.015 Score=47.37 Aligned_cols=85 Identities=15% Similarity=0.200 Sum_probs=64.3
Q ss_pred ceEEeecCCcee-------------eeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCcccEeeHhhhhccCChHH
Q 043063 162 KRLVDVGGSAGI-------------NFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPAADAIFMKWVLTTWTDDE 220 (301)
Q Consensus 162 ~~vlDvGgG~g~-------------~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~~D~v~~~~vlh~~~d~~ 220 (301)
..+.|+|.|+|+ .++. |...+-+.+ ..+++++.||..+- +..+|+|+|-..=.-+=+++
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~E~ 113 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIEEK 113 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhccc
Confidence 468899999974 3444 554444443 37899999999875 76789999987665666777
Q ss_pred HHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 221 CKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 221 ~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
.+.+++++.+-|+-+++++=.+....
T Consensus 114 qVpV~n~vleFLr~d~tiiPq~v~~~ 139 (252)
T COG4076 114 QVPVINAVLEFLRYDPTIIPQEVRIG 139 (252)
T ss_pred ccHHHHHHHHHhhcCCccccHHHhhc
Confidence 78999999999999888876665443
No 201
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=95.83 E-value=0.0036 Score=52.55 Aligned_cols=83 Identities=22% Similarity=0.360 Sum_probs=58.3
Q ss_pred CCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC---------ccc
Q 043063 159 KGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP---------AAD 205 (301)
Q Consensus 159 ~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p---------~~D 205 (301)
.+.++||+||+++| +-+|. |+..+.|++ .+||+++.||..+.++ ..|
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 35789999999995 34565 555555543 4799999999875322 249
Q ss_pred EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
+||+=. +...-...+..+.+.|+|||.+++-+....
T Consensus 124 ~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l~~ 159 (205)
T PF01596_consen 124 FVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVLWR 159 (205)
T ss_dssp EEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTTGG
T ss_pred EEEEcc-----cccchhhHHHHHhhhccCCeEEEEcccccc
Confidence 887754 445567888899999999998877666553
No 202
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=95.80 E-value=0.0021 Score=43.80 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=39.6
Q ss_pred ccccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 8 DGGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 8 ~lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
|..++..|. .|+.|+.+||+.+|+ +...+.+.|+.|...|++.+.+
T Consensus 10 E~~vy~~Ll~~~~~t~~eIa~~l~i----~~~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 10 EAKVYLALLKNGPATAEEIAEELGI----SRSTVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp HHHHHHHHHHHCHEEHHHHHHHHTS----SHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEc
Confidence 344555664 589999999999999 7999999999999999999884
No 203
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.75 E-value=0.019 Score=50.23 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=48.9
Q ss_pred CcceEEeecCCc-----------------eeeeeh-hHHHhhCCC--------CCceeEEeCCCCcc---CCcccEeeHh
Q 043063 160 GVKRLVDVGGSA-----------------GINFDL-PEVVAEAPS--------IPGVTHIGGDMFKS---IPAADAIFMK 210 (301)
Q Consensus 160 ~~~~vlDvGgG~-----------------g~~~Dl-p~v~~~a~~--------~~ri~~~~gd~~~~---~p~~D~v~~~ 210 (301)
.+.+|+=||+|. .+++|. |+.++.+++ ..+++|+.+|..+. +...|+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 356999999998 146787 766666543 47999999998754 2335988888
Q ss_pred hhhccCChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063 211 WVLTTWTDDECKLIMENCYKAIPAGGKLIAC 241 (301)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~ 241 (301)
.... .+.++-.++|+++.+.|+||.+|++-
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 7663 33334469999999999999988865
No 204
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=95.72 E-value=0.0085 Score=51.61 Aligned_cols=61 Identities=18% Similarity=0.298 Sum_probs=54.5
Q ss_pred cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhc
Q 043063 7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVT 76 (301)
Q Consensus 7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~ 76 (301)
.+.+|+-.|.+||+|.+||-..+++ .+..+..=++-|...|++.++ ++.|++|.+++.++.
T Consensus 14 kRk~lLllL~egPkti~EI~~~l~v----s~~ai~pqiKkL~~~~LV~~~-----~~~Y~LS~~G~iiv~ 74 (260)
T COG4742 14 KRKDLLLLLKEGPKTIEEIKNELNV----SSSAILPQIKKLKDKGLVVQE-----GDRYSLSSLGKIIVE 74 (260)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHhCC----CcHHHHHHHHHHhhCCCEEec-----CCEEEecchHHHHHH
Confidence 4566777888899999999999999 688999999999999999998 789999999988774
No 205
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=95.72 E-value=0.0091 Score=49.73 Aligned_cols=81 Identities=21% Similarity=0.436 Sum_probs=50.1
Q ss_pred ceEEeecCCce---------------eeeeh-hHHHhhCC------CCCceeEEeCCCCcc----CCc-c-cEeeHhhhh
Q 043063 162 KRLVDVGGSAG---------------INFDL-PEVVAEAP------SIPGVTHIGGDMFKS----IPA-A-DAIFMKWVL 213 (301)
Q Consensus 162 ~~vlDvGgG~g---------------~~~Dl-p~v~~~a~------~~~ri~~~~gd~~~~----~p~-~-D~v~~~~vl 213 (301)
..+||||||.| +++|. ...+..+. ...++.++.+|...- ++. . |-|++.+-=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 38999999997 67786 44444432 258999999998763 342 2 443332211
Q ss_pred ccCChHH-------HHHHHHHHHHhCCCCCEEEEecc
Q 043063 214 TTWTDDE-------CKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 214 h~~~d~~-------~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
.|+... ...+|+.+++.|+|||.|.+..-
T Consensus 99 -PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 99 -PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred -CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 133211 34789999999999998876653
No 206
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=95.65 E-value=0.013 Score=44.67 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=38.3
Q ss_pred cccccccC--CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 9 GGKKGRLA--NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 9 lglf~~L~--~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
..++..|- +||.|+++||+.++. +...+.+-|+-|...|++.+.+
T Consensus 30 v~v~~~LL~~~~~~tvdelae~lnr----~rStv~rsl~~L~~~GlV~Rek 76 (126)
T COG3355 30 VEVYKALLEENGPLTVDELAEILNR----SRSTVYRSLQNLLEAGLVEREK 76 (126)
T ss_pred HHHHHHHHhhcCCcCHHHHHHHHCc----cHHHHHHHHHHHHHcCCeeeee
Confidence 33444443 699999999999999 7889999999999999999884
No 207
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=95.64 E-value=0.0072 Score=52.27 Aligned_cols=84 Identities=25% Similarity=0.293 Sum_probs=59.2
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCcc---CCc--ccEe
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKS---IPA--ADAI 207 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~---~p~--~D~v 207 (301)
.++.+||-||+|.| +++|+ |.|++.+++ .+|++++.+|.+.- .+. .|+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 36789999999985 46787 788877654 37999999998753 333 5988
Q ss_pred eHhhhhccCChH--HHHHHHHHHHHhCCCCCEEEEec
Q 043063 208 FMKWVLTTWTDD--ECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 208 ~~~~vlh~~~d~--~~~~iL~~~~~aL~pgg~lli~e 242 (301)
+.-..-...+.. -...+++.+++.|+|||.+++.-
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 763322111111 13589999999999999988776
No 208
>PRK00536 speE spermidine synthase; Provisional
Probab=95.48 E-value=0.034 Score=48.35 Aligned_cols=76 Identities=16% Similarity=0.093 Sum_probs=53.8
Q ss_pred CCcceEEeecCCce-------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCccCC-cccEeeHhhhh
Q 043063 159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKSIP-AADAIFMKWVL 213 (301)
Q Consensus 159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~~p-~~D~v~~~~vl 213 (301)
.++++||-||||-| +.+|+ +.|++.+++ .+|++++.. +.+... ..|+|+.=..
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs~- 148 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQE- 148 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcCC-
Confidence 46799999999996 45676 677776654 479999872 222122 3599886532
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063 214 TTWTDDECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
.+ ....+.++++|+|||.++..-
T Consensus 149 ---~~---~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 149 ---PD---IHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred ---CC---hHHHHHHHHhcCCCcEEEECC
Confidence 22 377899999999999888754
No 209
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=95.46 E-value=0.013 Score=47.38 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
++.|+++||+++++ ++..++++|..|...|+|...+ |.+|.|++..-.
T Consensus 24 ~~vs~~eIA~~~~i----p~~~l~kIl~~L~~aGLv~s~r--G~~GGy~Lar~p 71 (164)
T PRK10857 24 GPVPLADISERQGI----SLSYLEQLFSRLRKNGLVSSVR--GPGGGYLLGKDA 71 (164)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC--CCCCCeeccCCH
Confidence 58999999999999 7999999999999999999753 246779887643
No 210
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.43 E-value=0.016 Score=47.41 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=38.0
Q ss_pred CcceEEeecCCce--------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCccCCcccEeeHhhhh
Q 043063 160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKSIPAADAIFMKWVL 213 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p~~D~v~~~~vl 213 (301)
..++|+|+|||+| +.+|+ |+.++.+++ ..+|.|+..|+.+.-...|.++++--+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPF 118 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPF 118 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCC
Confidence 3578999999996 45787 777777665 368999999986443334666655433
No 211
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=95.40 E-value=0.015 Score=41.94 Aligned_cols=62 Identities=26% Similarity=0.236 Sum_probs=48.0
Q ss_pred ccccccCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcCcceeccccccCC--CeEecChhchhhh
Q 043063 10 GKKGRLANTPLSASQILTRI-LPSGGGDAENLQRILRLLTNYGVFSEHREFGGE--RKYSLTEIGKSLV 75 (301)
Q Consensus 10 glf~~L~~g~~t~~ela~~~-~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~--~~y~~t~~s~~l~ 75 (301)
-|+..|..|+....||.+.+ |+ .+..|.+-|+.|...|++.+......+ -.|++|+.++.|.
T Consensus 9 ~IL~~l~~g~~rf~el~~~l~~i----s~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 9 LILRALFQGPMRFSELQRRLPGI----SPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELL 73 (90)
T ss_dssp HHHHHHTTSSEEHHHHHHHSTTS-----HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHhcchh----HHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHH
Confidence 35566777999999999999 88 799999999999999999886421111 2599999998776
No 212
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=95.35 E-value=0.0043 Score=43.75 Aligned_cols=62 Identities=24% Similarity=0.250 Sum_probs=48.4
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC----eEecChhchh
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER----KYSLTEIGKS 73 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~----~y~~t~~s~~ 73 (301)
++++|...|.. +..+..+|.+.+|+ +...+.+.|+.|...|+++..... .++ .|++|+.++.
T Consensus 1 vRl~Il~~L~~~~~~~f~~L~~~l~l----t~g~Ls~hL~~Le~~GyV~~~k~~-~~~~p~t~~~lT~~Gr~ 67 (80)
T PF13601_consen 1 VRLAILALLYANEEATFSELKEELGL----TDGNLSKHLKKLEEAGYVEVEKEF-EGRRPRTWYSLTDKGRE 67 (80)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEE--SSS--EEEEEE-HHHHH
T ss_pred CHHHHHHHHhhcCCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEEEec-cCCCCeEEEEECHHHHH
Confidence 46778888876 78999999999999 899999999999999999987532 112 4999998864
No 213
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=95.32 E-value=0.012 Score=44.68 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=47.3
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE 69 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 69 (301)
.++.|+..|.. ++.++.||++.+++ .+..+.+-|+.|...|+|...+.+ ..-.|++++
T Consensus 17 tRl~IL~~L~~~~~~~v~ela~~l~l----sqstvS~HL~~L~~AGLV~~~r~G-r~~~Y~l~~ 75 (117)
T PRK10141 17 TRLGIVLLLRESGELCVCDLCTALDQ----SQPKISRHLALLRESGLLLDRKQG-KWVHYRLSP 75 (117)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEEc-CEEEEEECc
Confidence 56788999974 78999999999999 688999999999999999877521 122477765
No 214
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=95.27 E-value=0.011 Score=48.90 Aligned_cols=132 Identities=15% Similarity=0.188 Sum_probs=74.2
Q ss_pred CC-CcceEEeecCCceeeeeh--hHHHhh-CCC-----CCceeEEeCCCCcc---CCc---ccEeeHhhhhccCChHHHH
Q 043063 158 FK-GVKRLVDVGGSAGINFDL--PEVVAE-APS-----IPGVTHIGGDMFKS---IPA---ADAIFMKWVLTTWTDDECK 222 (301)
Q Consensus 158 ~~-~~~~vlDvGgG~g~~~Dl--p~v~~~-a~~-----~~ri~~~~gd~~~~---~p~---~D~v~~~~vlh~~~d~~~~ 222 (301)
|. .+.++||+|+|.|-+-.. |..-+. |.+ .+|.+....+.... +.. .|+|.|-++|.-..+. -
T Consensus 109 w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p--~ 186 (288)
T KOG3987|consen 109 WGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDP--F 186 (288)
T ss_pred cCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcCh--H
Confidence 43 368999999999832111 211111 011 24444444444433 111 4999999999765554 5
Q ss_pred HHHHHHHHhCCC-CCEEEEecc--ccC---CCCCChHHhhhhhhccHHHHhhhhcccccc--CHHHHHHHHHhCCCCceE
Q 043063 223 LIMENCYKAIPA-GGKLIACEP--VLP---DDSNESQRTRALLEGDIFVMTIYRAKGKHM--TEQEFKQLGFSAGFPHLR 294 (301)
Q Consensus 223 ~iL~~~~~aL~p-gg~lli~e~--~~~---~~~~~~~~~~~~~~~d~~m~~~~~~~g~~r--t~~e~~~~l~~aGf~~~~ 294 (301)
++|+.++.+|.| .|++++.-. +.+ .+.+..| .+. | ..+ ..+|+.+ ....+-++|+.+||.+..
T Consensus 187 kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~-~rP----d-n~L---e~~Gr~~ee~v~~~~e~lr~~g~~vea 257 (288)
T KOG3987|consen 187 KLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLP-LRP----D-NLL---ENNGRSFEEEVARFMELLRNCGYRVEA 257 (288)
T ss_pred HHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCc-CCc----h-HHH---HhcCccHHHHHHHHHHHHHhcCchhhh
Confidence 999999999999 687766432 211 1111001 011 1 111 1234432 334467889999999988
Q ss_pred EEEccC
Q 043063 295 LYRVLD 300 (301)
Q Consensus 295 ~~~~~~ 300 (301)
...++|
T Consensus 258 wTrlPY 263 (288)
T KOG3987|consen 258 WTRLPY 263 (288)
T ss_pred hhcCCe
Confidence 777765
No 215
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=95.22 E-value=0.0075 Score=37.85 Aligned_cols=43 Identities=12% Similarity=0.208 Sum_probs=35.7
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCccee
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFS 54 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~ 54 (301)
+..|+..|.+ ++.|..+||+.+|+ ....+.+.|+-|...|+++
T Consensus 5 ~~~Il~~l~~~~~~t~~ela~~~~i----s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 5 QRKILNYLRENPRITQKELAEKLGI----SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHCTTS-HHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCcCcC
Confidence 4557777875 67999999999999 7899999999999999984
No 216
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=95.14 E-value=0.018 Score=41.83 Aligned_cols=64 Identities=25% Similarity=0.232 Sum_probs=48.9
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhh
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~ 75 (301)
++.++..|.. ++.|..+|++.+++ ++..+.+.|+.|+..|+|.+....+ ....|.+|+.+..+.
T Consensus 12 ~~~il~~l~~~~~~~~~~la~~~~~----s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~ 78 (101)
T smart00347 12 QFLVLRILYEEGPLSVSELAKRLGV----SPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELI 78 (101)
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCC----CchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHH
Confidence 5567777764 67999999999999 7889999999999999998773210 112577888776544
No 217
>PHA00738 putative HTH transcription regulator
Probab=95.08 E-value=0.014 Score=43.03 Aligned_cols=60 Identities=22% Similarity=0.119 Sum_probs=48.4
Q ss_pred cccccccccCCC-CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 7 RDGGKKGRLANT-PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 7 ~~lglf~~L~~g-~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
.++.|++.|..+ +.++.+|++.+++ ....+.+-|+.|...|+|...+.+ ..-.|++++..
T Consensus 13 tRr~IL~lL~~~e~~~V~eLae~l~l----SQptVS~HLKvLreAGLV~srK~G-r~vyY~Ln~~~ 73 (108)
T PHA00738 13 LRRKILELIAENYILSASLISHTLLL----SYTTVLRHLKILNEQGYIELYKEG-RTLYAKIRENS 73 (108)
T ss_pred HHHHHHHHHHHcCCccHHHHHHhhCC----CHHHHHHHHHHHHHCCceEEEEEC-CEEEEEECCCc
Confidence 567899999875 6999999999999 677999999999999999988522 22357777643
No 218
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=95.06 E-value=0.029 Score=44.11 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063 17 NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV 75 (301)
Q Consensus 17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 75 (301)
.|+.++.+||+.+++ .+..+.+.|+.|...|+|.+.. ...|++|+.++.+.
T Consensus 20 ~~~~~~~ela~~l~v----s~~svs~~l~~L~~~Gli~~~~----~~~i~LT~~G~~~a 70 (142)
T PRK03902 20 KGYARVSDIAEALSV----HPSSVTKMVQKLDKDEYLIYEK----YRGLVLTPKGKKIG 70 (142)
T ss_pred CCCcCHHHHHHHhCC----ChhHHHHHHHHHHHCCCEEEec----CceEEECHHHHHHH
Confidence 378899999999999 7889999999999999998752 56899999986543
No 219
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=94.90 E-value=0.039 Score=47.68 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=56.5
Q ss_pred CCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC----------cc
Q 043063 159 KGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP----------AA 204 (301)
Q Consensus 159 ~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p----------~~ 204 (301)
.+.+++|+||.++| +-+|. |+..+.|++ .++|+++.||..+-+| ..
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 35789999999885 34565 555555543 4899999999876422 24
Q ss_pred cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063 205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVL 245 (301)
Q Consensus 205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~ 245 (301)
|+||+=. ....-...++.+.+.|+|||.|++-+...
T Consensus 158 D~iFiDa-----dK~~Y~~y~~~~l~ll~~GGviv~DNvl~ 193 (247)
T PLN02589 158 DFIFVDA-----DKDNYINYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_pred cEEEecC-----CHHHhHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 8877653 34445678888889999999766544443
No 220
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=94.87 E-value=0.042 Score=42.83 Aligned_cols=48 Identities=21% Similarity=0.285 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
++.|.++||+.+++ ++..++++|..|...|++...+ |.+|.|+++.-.
T Consensus 24 ~~~s~~~ia~~~~i----p~~~l~kil~~L~~~glv~s~~--G~~Ggy~l~~~~ 71 (135)
T TIGR02010 24 GPVTLADISERQGI----SLSYLEQLFAKLRKAGLVKSVR--GPGGGYQLGRPA 71 (135)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEe--CCCCCEeccCCH
Confidence 47899999999999 7999999999999999998653 235679887644
No 221
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=94.86 E-value=0.0093 Score=40.72 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=35.1
Q ss_pred cccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 11 KKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 11 lf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
|.+.|.. +..|..+||.++++ ++..++.+|..|+..|.|.+..
T Consensus 5 i~~~l~~~~~~S~~eLa~~~~~----s~~~ve~mL~~l~~kG~I~~~~ 48 (69)
T PF09012_consen 5 IRDYLRERGRVSLAELAREFGI----SPEAVEAMLEQLIRKGYIRKVD 48 (69)
T ss_dssp HHHHHHHS-SEEHHHHHHHTT------HHHHHHHHHHHHCCTSCEEEE
T ss_pred HHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEec
Confidence 4455654 78999999999999 8999999999999999999873
No 222
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=94.84 E-value=0.017 Score=38.46 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=35.3
Q ss_pred cccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 11 KKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 11 lf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
|.+.|.. +|.|..|||+++|+ +...++++|..|...|.+.+.+
T Consensus 5 Il~~i~~~~~p~~T~eiA~~~gl----s~~~aR~yL~~Le~eG~V~~~~ 49 (62)
T PF04703_consen 5 ILEYIKEQNGPLKTREIADALGL----SIYQARYYLEKLEKEGKVERSP 49 (62)
T ss_dssp HHHHHHHHTS-EEHHHHHHHHTS-----HHHHHHHHHHHHHCTSEEEES
T ss_pred HHHHHHHcCCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEec
Confidence 4455543 79999999999999 7889999999999999999763
No 223
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=94.83 E-value=0.03 Score=38.08 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=45.1
Q ss_pred ccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 8 DGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 8 ~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
++.++..|.+++.|..+||+++|+ ....+.+-++.|.+.|+..... +..|++.+..
T Consensus 2 ~~~il~~L~~~~~~~~eLa~~l~v----S~~tv~~~l~~L~~~g~~i~~~----~~g~~l~~~~ 57 (69)
T TIGR00122 2 PLRLLALLADNPFSGEKLGEALGM----SRTAVNKHIQTLREWGVDVLTV----GKGYRLPPPI 57 (69)
T ss_pred hHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEec----CCceEecCcc
Confidence 456778888889999999999999 6889999999999999965542 4567775543
No 224
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=94.81 E-value=0.042 Score=36.13 Aligned_cols=54 Identities=22% Similarity=0.217 Sum_probs=41.1
Q ss_pred cccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063 11 KKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE 69 (301)
Q Consensus 11 lf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 69 (301)
|+..|..++.|..+|++.+++ +...+.+.|+.|...|++.....+ ....|.++.
T Consensus 2 il~~l~~~~~~~~~i~~~l~i----s~~~v~~~l~~L~~~g~i~~~~~~-~~~~~~~~~ 55 (66)
T smart00418 2 ILKLLAEGELCVCELAEILGL----SQSTVSHHLKKLREAGLVESRREG-KRVYYSLTD 55 (66)
T ss_pred HHHHhhcCCccHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeeeecC-CEEEEEEch
Confidence 344455678999999999999 788999999999999999976311 223465555
No 225
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=94.68 E-value=0.047 Score=43.41 Aligned_cols=48 Identities=27% Similarity=0.375 Sum_probs=42.1
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK 72 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~ 72 (301)
+.|+++||+..|+ ++..|+++|..|...|+|.-.+ |.+|.|+++.-.+
T Consensus 25 ~~s~~~IA~~~~i----s~~~L~kil~~L~kaGlV~S~r--G~~GGy~Lar~~~ 72 (150)
T COG1959 25 PVSSAEIAERQGI----SPSYLEKILSKLRKAGLVKSVR--GKGGGYRLARPPE 72 (150)
T ss_pred cccHHHHHHHhCc----CHHHHHHHHHHHHHcCCEEeec--CCCCCccCCCChH
Confidence 7899999999999 7999999999999999999874 3467899987543
No 226
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=94.62 E-value=0.052 Score=45.83 Aligned_cols=84 Identities=18% Similarity=0.326 Sum_probs=60.1
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEe-CCCCccC-----CcccEe
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIG-GDMFKSI-----PAADAI 207 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~-gd~~~~~-----p~~D~v 207 (301)
.++.+++|+||.+.| +-+|. |+..+.|++ .++|++.. ||..+.+ +..|+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 457899999999995 34676 677766654 47898888 5776542 124988
Q ss_pred eHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 208 FMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 208 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
|+=. ....-...|..+-+.|+|||.+++-+...+
T Consensus 137 FIDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 137 FIDA-----DKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred EEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 7643 444557899999999999997766555554
No 227
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=94.58 E-value=0.043 Score=51.54 Aligned_cols=77 Identities=17% Similarity=0.349 Sum_probs=50.1
Q ss_pred CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC------c-ccEeeHh
Q 043063 158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP------A-ADAIFMK 210 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p------~-~D~v~~~ 210 (301)
..+..+|||+|||+| +.+|. +.+++.+++ .++++|+.+|+.+.++ . .|+|++.
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 455679999999996 56787 778777664 3689999999864322 1 3877742
Q ss_pred hhhccCChHH-HHHHHHHHHHhCCCCCEEEE
Q 043063 211 WVLTTWTDDE-CKLIMENCYKAIPAGGKLIA 240 (301)
Q Consensus 211 ~vlh~~~d~~-~~~iL~~~~~aL~pgg~lli 240 (301)
-|... ...+|+.+. .++|++.+++
T Consensus 370 -----PPr~G~~~~~l~~l~-~l~~~~ivyv 394 (431)
T TIGR00479 370 -----PPRKGCAAEVLRTII-ELKPERIVYV 394 (431)
T ss_pred -----cCCCCCCHHHHHHHH-hcCCCEEEEE
Confidence 22211 235666555 3788765554
No 228
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=94.55 E-value=0.02 Score=38.55 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=36.8
Q ss_pred CCCccccccccccccC------CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 1 MEDNECRDGGKKGRLA------NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 1 ~~~~~a~~lglf~~L~------~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
|+.-|.-...|++.|. +-|-|+.|||+.+|++ .+..+.+.|++|...|+|.+.
T Consensus 1 M~~LT~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~---S~~tv~~~L~~Le~kG~I~r~ 59 (65)
T PF01726_consen 1 MKELTERQKEVLEFIREYIEENGYPPTVREIAEALGLK---STSTVQRHLKALERKGYIRRD 59 (65)
T ss_dssp -----HHHHHHHHHHHHHHHHHSS---HHHHHHHHTSS---SHHHHHHHHHHHHHTTSEEEG
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCC---ChHHHHHHHHHHHHCcCccCC
Confidence 3344444555666664 2256999999999994 589999999999999999988
No 229
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=94.54 E-value=0.049 Score=42.12 Aligned_cols=49 Identities=29% Similarity=0.373 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK 72 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~ 72 (301)
++.|.++||+.+++ ++..++++|+.|...|++...+ +.+|.|.++...+
T Consensus 24 ~~~s~~eia~~~~i----~~~~v~~il~~L~~~gli~~~~--g~~ggy~l~~~~~ 72 (132)
T TIGR00738 24 GPVSVKEIAERQGI----SRSYLEKILRTLRRAGLVESVR--GPGGGYRLARPPE 72 (132)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecc--CCCCCccCCCCHH
Confidence 48999999999999 7999999999999999998752 1345788876443
No 230
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=94.49 E-value=0.042 Score=49.34 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=36.9
Q ss_pred cceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccC--C--cccEeeHh
Q 043063 161 VKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSI--P--AADAIFMK 210 (301)
Q Consensus 161 ~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~--p--~~D~v~~~ 210 (301)
..+|||+|||+| +.+|. +.+++.+++ .++++|+.+|+.+.. + ..|+|++.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 479999999996 46787 777776653 257999999986532 1 24888765
No 231
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.49 E-value=0.031 Score=44.08 Aligned_cols=40 Identities=35% Similarity=0.548 Sum_probs=36.9
Q ss_pred ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 204 ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 204 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
.|+|++.|++.|+.-++-...|+.+++.|+|||+|-|.-+
T Consensus 48 ~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 48 VDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 5999999999999999999999999999999999887654
No 232
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=94.40 E-value=0.04 Score=46.16 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=47.5
Q ss_pred ccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccc--c-c-CCCeEecChhchhhh
Q 043063 10 GKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHRE--F-G-GERKYSLTEIGKSLV 75 (301)
Q Consensus 10 glf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~--~-~-~~~~y~~t~~s~~l~ 75 (301)
.|+..|. .++.|..+||+.+|+ ++..+++.|+.|...|+|++... + + ..-.|++|+.+..+.
T Consensus 5 ~IL~~L~~~~~~t~~eLA~~lgi----s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~ 71 (203)
T TIGR02702 5 DILSYLLKQGQATAAALAEALAI----SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQF 71 (203)
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhc
Confidence 4566664 488999999999999 89999999999999999987621 1 1 112378898876544
No 233
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=94.36 E-value=0.038 Score=41.90 Aligned_cols=65 Identities=20% Similarity=0.136 Sum_probs=50.0
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhhc
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLVT 76 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~~ 76 (301)
+..++..|.. ++.|..+||+.+++ ++..+.+.++-|...|+|.+.+... ..-.|.+|+.++.+..
T Consensus 30 q~~iL~~l~~~~~~t~~ela~~~~~----~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~ 97 (118)
T TIGR02337 30 QWRILRILAEQGSMEFTQLANQACI----LRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYA 97 (118)
T ss_pred HHHHHHHHHHcCCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 3446666654 78999999999999 7889999999999999999864210 1126899998876654
No 234
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=94.34 E-value=0.079 Score=47.69 Aligned_cols=80 Identities=20% Similarity=0.362 Sum_probs=59.3
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-------------CCceeEEeCCCCccCCc----cc
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------------IPGVTHIGGDMFKSIPA----AD 205 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------------~~ri~~~~gd~~~~~p~----~D 205 (301)
++..++|-+|||-| +..|+ |.|++-++. .+|++++..|.|+.... .|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 46789999999996 45688 999988763 37999999999876332 26
Q ss_pred EeeHhhhhccCChHH--------HHHHHHHHHHhCCCCCEEEEecc
Q 043063 206 AIFMKWVLTTWTDDE--------CKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 206 ~v~~~~vlh~~~d~~--------~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
+++. +++|+. ...+-+-+++.|+++|.+++.-.
T Consensus 368 ~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 368 VVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred EEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 5543 455543 34567778889999999888754
No 235
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=94.25 E-value=0.052 Score=45.62 Aligned_cols=59 Identities=27% Similarity=0.349 Sum_probs=46.4
Q ss_pred cccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC----eEecChhchh
Q 043063 11 KKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER----KYSLTEIGKS 73 (301)
Q Consensus 11 lf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~----~y~~t~~s~~ 73 (301)
|...|. .||+|+.|||+++|+ ++..+++.|..|++.|+++.....+.-| .|++|..+..
T Consensus 16 il~lL~~~g~~sa~elA~~Lgi----s~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~ 79 (218)
T COG2345 16 ILELLKKSGPVSADELAEELGI----SPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGRE 79 (218)
T ss_pred HHHHHhccCCccHHHHHHHhCC----CHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchh
Confidence 445565 499999999999999 7999999999999999998653211112 5999998765
No 236
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=94.18 E-value=0.042 Score=43.84 Aligned_cols=48 Identities=19% Similarity=0.114 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
++.|.++||+..++ ++..|+++|..|...|+|...+ |.+|.|+++.-.
T Consensus 23 ~~~s~~eIA~~~~i----s~~~L~kIl~~L~~aGlv~S~r--G~~GGy~La~~p 70 (153)
T PRK11920 23 KLSRIPEIARAYGV----SELFLFKILQPLVEAGLVETVR--GRNGGVRLGRPA 70 (153)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec--CCCCCeeecCCH
Confidence 56899999999999 7999999999999999999885 346789988644
No 237
>PRK11050 manganese transport regulator MntR; Provisional
Probab=94.10 E-value=0.058 Score=43.01 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=45.5
Q ss_pred cccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063 13 GRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV 75 (301)
Q Consensus 13 ~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 75 (301)
..+.. ++.+..+||+.+++ ++..+.+.++.|...|+|.+.. ...+.+|+.+..+.
T Consensus 44 ~~l~~~~~~t~~eLA~~l~i----s~stVsr~l~~Le~~GlI~r~~----~~~v~LT~~G~~l~ 99 (152)
T PRK11050 44 DLIAEVGEARQVDIAARLGV----SQPTVAKMLKRLARDGLVEMRP----YRGVFLTPEGEKLA 99 (152)
T ss_pred HHHHhcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEec----CCceEECchHHHHH
Confidence 34443 78999999999999 7899999999999999999862 45788888876654
No 238
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=94.05 E-value=0.07 Score=42.58 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063 17 NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV 75 (301)
Q Consensus 17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 75 (301)
.|+++..+||+.+++ .|..+...++-|...|+++..+ .+.+.+|+.++...
T Consensus 22 ~~~~~~~diA~~L~V----sp~sVt~ml~rL~~~GlV~~~~----y~gi~LT~~G~~~a 72 (154)
T COG1321 22 KGFARTKDIAERLKV----SPPSVTEMLKRLERLGLVEYEP----YGGVTLTEKGREKA 72 (154)
T ss_pred cCcccHHHHHHHhCC----CcHHHHHHHHHHHHCCCeEEec----CCCeEEChhhHHHH
Confidence 488999999999999 7889999999999999999983 78899999886544
No 239
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.86 E-value=0.058 Score=43.81 Aligned_cols=83 Identities=11% Similarity=0.220 Sum_probs=45.4
Q ss_pred cceEEeecCCceee----------------eeh-hHHHhhCCC-----CCceeEEeCCCCccC-Cc-ccEeeHhhhhccC
Q 043063 161 VKRLVDVGGSAGIN----------------FDL-PEVVAEAPS-----IPGVTHIGGDMFKSI-PA-ADAIFMKWVLTTW 216 (301)
Q Consensus 161 ~~~vlDvGgG~g~~----------------~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~-p~-~D~v~~~~vlh~~ 216 (301)
...+++||||+|++ -|+ |+.++...+ .-++..+..|+..-+ ++ .|+++++--.---
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 57899999999742 276 555544221 234666777776542 22 3666554322111
Q ss_pred Ch-------------------HHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 217 TD-------------------DECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 217 ~d-------------------~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
++ +-..++|..+-..|.|.|.+++.-.
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 11 1133555556666666676665543
No 240
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.82 E-value=0.016 Score=42.98 Aligned_cols=86 Identities=22% Similarity=0.308 Sum_probs=42.7
Q ss_pred cEeeHhhh---hc-cCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHH
Q 043063 205 DAIFMKWV---LT-TWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQE 280 (301)
Q Consensus 205 D~v~~~~v---lh-~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e 280 (301)
|+|+|-.| +| +|.|+-..++++++++.|+|||.+++ |+-.= .++.. ..-..-.+.. ....-....++
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-EpQ~w----~sY~~--~~~~~~~~~~--n~~~i~lrP~~ 73 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EPQPW----KSYKK--AKRLSEEIRE--NYKSIKLRPDQ 73 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E---H----HHHHT--TTTS-HHHHH--HHHH----GGG
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eCCCc----HHHHH--HhhhhHHHHh--HHhceEEChHH
Confidence 56655444 34 68899999999999999999997764 43110 01100 0000000000 11122234567
Q ss_pred HHHHHHh--CCCCceEEEEcc
Q 043063 281 FKQLGFS--AGFPHLRLYRVL 299 (301)
Q Consensus 281 ~~~~l~~--aGf~~~~~~~~~ 299 (301)
+.++|.+ .||...+...++
T Consensus 74 F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 74 FEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp HHHHHTSTTT---EEEEE---
T ss_pred HHHHHHhcccceEEEEEcccC
Confidence 8888877 699988766553
No 241
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=93.72 E-value=0.056 Score=35.34 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=37.7
Q ss_pred cccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 11 KKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 11 lf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
|.+.|.. +..|+++||+.+|+ .+.-++|=|..|...|++.+.
T Consensus 5 Il~~l~~~~~~s~~ela~~~~V----S~~TiRRDl~~L~~~g~i~r~ 47 (57)
T PF08220_consen 5 ILELLKEKGKVSVKELAEEFGV----SEMTIRRDLNKLEKQGLIKRT 47 (57)
T ss_pred HHHHHHHcCCEEHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 5566764 88999999999999 688999999999999999998
No 242
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=93.72 E-value=0.068 Score=36.30 Aligned_cols=58 Identities=26% Similarity=0.280 Sum_probs=44.8
Q ss_pred cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063 7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE 69 (301)
Q Consensus 7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 69 (301)
.+..|+..|..++.+..+|++.+++ +...+.+.|+.|.+.|++...... ....|++++
T Consensus 8 ~~~~il~~l~~~~~~~~ei~~~~~i----~~~~i~~~l~~L~~~g~i~~~~~~-~~~~~~~~~ 65 (78)
T cd00090 8 TRLRILRLLLEGPLTVSELAERLGL----SQSTVSRHLKKLEEAGLVESRREG-RRVYYSLTD 65 (78)
T ss_pred HHHHHHHHHHHCCcCHHHHHHHHCc----CHhHHHHHHHHHHHCCCeEEEEec-cEEEEEeCC
Confidence 3455666666656999999999999 788999999999999999976311 224677775
No 243
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=93.60 E-value=0.094 Score=44.68 Aligned_cols=80 Identities=19% Similarity=0.382 Sum_probs=50.7
Q ss_pred ceEEeecCCce---------------eeeeh-hHHHhhCC----C--CCceeEEeCCCCcc----CCcc--cEeeHhhhh
Q 043063 162 KRLVDVGGSAG---------------INFDL-PEVVAEAP----S--IPGVTHIGGDMFKS----IPAA--DAIFMKWVL 213 (301)
Q Consensus 162 ~~vlDvGgG~g---------------~~~Dl-p~v~~~a~----~--~~ri~~~~gd~~~~----~p~~--D~v~~~~vl 213 (301)
..+||||||.| ++++. ..++..+. + ..++.++.+|..+- .|.+ |-|++.+-=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 58999999997 56776 33333332 1 24899999998653 3332 433332211
Q ss_pred ccCChHH-------HHHHHHHHHHhCCCCCEEEEec
Q 043063 214 TTWTDDE-------CKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 214 h~~~d~~-------~~~iL~~~~~aL~pgg~lli~e 242 (301)
.|+... ...+|+.+.+.|+|||.|.+..
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 233221 2468999999999999987654
No 244
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=93.56 E-value=0.071 Score=44.16 Aligned_cols=80 Identities=13% Similarity=0.142 Sum_probs=46.1
Q ss_pred cceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccC-----Cc--ccEeeHhh
Q 043063 161 VKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSI-----PA--ADAIFMKW 211 (301)
Q Consensus 161 ~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~-----p~--~D~v~~~~ 211 (301)
..++||++||+| +.+|. +..++.+++ .++++++.+|.++.+ .. .|+|++-=
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP 129 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP 129 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence 478999999995 35576 555544432 258999999996531 11 36666543
Q ss_pred hhccCChHHHHHHHHHHHH--hCCCCCEEEEeccc
Q 043063 212 VLTTWTDDECKLIMENCYK--AIPAGGKLIACEPV 244 (301)
Q Consensus 212 vlh~~~d~~~~~iL~~~~~--aL~pgg~lli~e~~ 244 (301)
-... .....+++.+.+ .|+++| ++|+|..
T Consensus 130 Py~~---~~~~~~l~~l~~~~~l~~~~-iiv~E~~ 160 (189)
T TIGR00095 130 PFFN---GALQALLELCENNWILEDTV-LIVVEED 160 (189)
T ss_pred CCCC---CcHHHHHHHHHHCCCCCCCe-EEEEEec
Confidence 3321 122344544433 466666 4555543
No 245
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.50 E-value=0.18 Score=42.06 Aligned_cols=94 Identities=21% Similarity=0.334 Sum_probs=60.1
Q ss_pred HHhhhcCCCCCCcceEEeecCCce----------------eeeehhHHHhhCCCCCceeEEeCCCCcc-C--------Cc
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG----------------INFDLPEVVAEAPSIPGVTHIGGDMFKS-I--------PA 203 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~-~--------p~ 203 (301)
.++.+.+.-+++..+|+|+|+..| +.+|+.++-. ...|.++.+|++.+ . +.
T Consensus 34 ~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----~~~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 34 LELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----IPGVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred HHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----CCCceEEeeeccCccHHHHHHHHcCC
Confidence 345555544678899999999884 4667755443 34599999999865 2 22
Q ss_pred --ccEeeH---hhhhccCC------hHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 204 --ADAIFM---KWVLTTWT------DDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 204 --~D~v~~---~~vlh~~~------d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
.|+|+. .++-.+++ -.-+...+.-+...|+|||.+++-.+--.
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~ 163 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE 163 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence 277762 11111222 12244567777789999999998877544
No 246
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=93.47 E-value=0.069 Score=41.94 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE 69 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 69 (301)
.+.+..+||+..|+ ++..+++.|..|...|++...+ |.+|.|.+..
T Consensus 24 ~~~s~~~ia~~~~i----s~~~vrk~l~~L~~~Glv~s~~--G~~GG~~l~~ 69 (141)
T PRK11014 24 RMTSISEVTEVYGV----SRNHMVKIINQLSRAGYVTAVR--GKNGGIRLGK 69 (141)
T ss_pred CccCHHHHHHHHCc----CHHHHHHHHHHHHhCCEEEEec--CCCCCeeecC
Confidence 36789999999999 7999999999999999999874 2345788865
No 247
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=93.31 E-value=0.022 Score=37.67 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=36.2
Q ss_pred cccccccCC-CC--CCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 9 GGKKGRLAN-TP--LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 9 lglf~~L~~-g~--~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
..++-.|.. ++ .|..+||+.+++ ++..+.+.++.|...|+|++..
T Consensus 8 ~~vL~~l~~~~~~~~t~~~la~~l~~----~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 8 FRVLMALARHPGEELTQSELAERLGI----SKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp HHHHHHHHHSTTSGEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC
Confidence 334445543 33 799999999999 7999999999999999999874
No 248
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=93.29 E-value=0.29 Score=41.04 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=62.9
Q ss_pred EEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc---ccEeeHhhhhccCC
Q 043063 164 LVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA---ADAIFMKWVLTTWT 217 (301)
Q Consensus 164 vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~---~D~v~~~~vlh~~~ 217 (301)
|.||||-+| +..|+ |..++.|++ .++|++..+|-++.++. .|+|++..+ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 689999994 45587 666655543 48999999998887443 578877764 4
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEE
Q 043063 218 DDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR 297 (301)
Q Consensus 218 d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~ 297 (301)
-.-..+||.+....+++..+++++-. .....+++||.+.||.+.+..-
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lILqP~--------------------------------~~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLILQPN--------------------------------THAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEEEEES--------------------------------S-HHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHhhHHHhccCCeEEEeCC--------------------------------CChHHHHHHHHHCCCEEEEeEE
Confidence 55577888887766655445544211 0356788888999988877665
Q ss_pred cc
Q 043063 298 VL 299 (301)
Q Consensus 298 ~~ 299 (301)
+.
T Consensus 125 v~ 126 (205)
T PF04816_consen 125 VE 126 (205)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 249
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=93.29 E-value=0.26 Score=41.83 Aligned_cols=112 Identities=20% Similarity=0.213 Sum_probs=72.8
Q ss_pred CCCcceEEeecCCce--------------eeeeh-hHHHhhCCC--------CCceeEEeCCCCcc---CCc--ccEeeH
Q 043063 158 FKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS--------IPGVTHIGGDMFKS---IPA--ADAIFM 209 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~--------~~ri~~~~gd~~~~---~p~--~D~v~~ 209 (301)
-+...+|||.=.|-| +-++- |.|++.|.- ..+|+++.||.++- +++ .|+|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI-- 209 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI-- 209 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE--
Confidence 345789999987774 22343 778777653 24789999999864 454 2764
Q ss_pred hhhhccCCh------HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHH
Q 043063 210 KWVLTTWTD------DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQ 283 (301)
Q Consensus 210 ~~vlh~~~d------~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~ 283 (301)
+|+=|. -....+-+++++.|+|||+++=.- -.. +. .....| -.....+
T Consensus 210 ---iHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv--G~P----g~---ryrG~d--------------~~~gVa~ 263 (287)
T COG2521 210 ---IHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV--GNP----GK---RYRGLD--------------LPKGVAE 263 (287)
T ss_pred ---eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe--CCC----Cc---ccccCC--------------hhHHHHH
Confidence 455332 235578899999999999987322 211 10 111233 2456778
Q ss_pred HHHhCCCCceEEEE
Q 043063 284 LGFSAGFPHLRLYR 297 (301)
Q Consensus 284 ~l~~aGf~~~~~~~ 297 (301)
.|+++||.+++...
T Consensus 264 RLr~vGF~~v~~~~ 277 (287)
T COG2521 264 RLRRVGFEVVKKVR 277 (287)
T ss_pred HHHhcCceeeeeeh
Confidence 89999999877654
No 250
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=93.19 E-value=0.28 Score=40.48 Aligned_cols=86 Identities=17% Similarity=0.254 Sum_probs=55.8
Q ss_pred CCCcceEEeecCCceee--------------eeh-hHHHhhCCC-----CCceeEEeCCCCccCCcccEeeHhhhhccCC
Q 043063 158 FKGVKRLVDVGGSAGIN--------------FDL-PEVVAEAPS-----IPGVTHIGGDMFKSIPAADAIFMKWVLTTWT 217 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g~~--------------~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p~~D~v~~~~vlh~~~ 217 (301)
+-..++|||.|.|+|++ -|. |...+.++- .-.|.+...|....-|..|+++++.++++.+
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~~ 156 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNHT 156 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCch
Confidence 44578999999999631 133 555544432 1357777777655333469999999997665
Q ss_pred hHHHHHHHHHHHHhCCC-CCEEEEeccccC
Q 043063 218 DDECKLIMENCYKAIPA-GGKLIACEPVLP 246 (301)
Q Consensus 218 d~~~~~iL~~~~~aL~p-gg~lli~e~~~~ 246 (301)
. +.+++. +...|.. |-.++|.|+-.+
T Consensus 157 ~--a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 157 E--ADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred H--HHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 4 457777 6666655 456777776554
No 251
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=93.15 E-value=0.074 Score=38.35 Aligned_cols=46 Identities=22% Similarity=0.197 Sum_probs=40.5
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.++.|..+|.. ||=...-+|..+++ +...++..|+.|..+|+|++.
T Consensus 8 l~~~IL~hl~~~~~Dy~k~ia~~l~~----~~~~v~~~l~~Le~~GLler~ 54 (92)
T PF10007_consen 8 LDLKILQHLKKAGPDYAKSIARRLKI----PLEEVREALEKLEEMGLLERV 54 (92)
T ss_pred hHHHHHHHHHHHCCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 45667777775 78888889999999 899999999999999999998
No 252
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=93.12 E-value=0.11 Score=40.14 Aligned_cols=46 Identities=30% Similarity=0.483 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE 69 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 69 (301)
++.|+.+||+++++ ++..+.+.|+.|...|++...+ +..+.|.+..
T Consensus 24 ~~~s~~eia~~l~i----s~~~v~~~l~~L~~~Gli~~~~--g~~ggy~l~~ 69 (130)
T TIGR02944 24 QPYSAAEIAEQTGL----NAPTVSKILKQLSLAGIVTSKR--GVEGGYTLAR 69 (130)
T ss_pred CCccHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecC--CCCCChhhcC
Confidence 57899999999999 7999999999999999998652 1245677754
No 253
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=93.05 E-value=0.024 Score=37.10 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=37.5
Q ss_pred cccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 9 GGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 9 lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
+.++..|.+ ++.|..+||+.+++ ++..+.++++.|...|++++..
T Consensus 6 ~~iL~~l~~~~~~~~~~la~~~~~----~~~~~t~~i~~L~~~g~I~r~~ 51 (59)
T PF01047_consen 6 FRILRILYENGGITQSELAEKLGI----SRSTVTRIIKRLEKKGLIERER 51 (59)
T ss_dssp HHHHHHHHHHSSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecc
Confidence 344555554 78999999999999 8999999999999999999874
No 254
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=93.02 E-value=0.17 Score=36.67 Aligned_cols=46 Identities=26% Similarity=0.374 Sum_probs=40.1
Q ss_pred HHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063 22 ASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV 75 (301)
Q Consensus 22 ~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 75 (301)
..+||+.+++ ++..+.+.++.|...|+|.+.+ +..|.+|+.+..+.
T Consensus 2 ~~ela~~l~i----s~stvs~~l~~L~~~glI~r~~----~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNV----SPPTVTQMLKKLEKDGLVEYEP----YRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEcC----CCceEechhHHHHH
Confidence 4689999999 7889999999999999999983 46899999886654
No 255
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=92.92 E-value=0.075 Score=40.49 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=40.7
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.+.|++.|++ +|.|..|+|+..|- +..++.|-|+.|.-.|++...
T Consensus 66 nleLl~~Ia~~~P~Si~ElAe~vgR----dv~nvhr~Ls~l~~~GlI~fe 111 (144)
T COG4190 66 NLELLELIAQEEPASINELAELVGR----DVKNVHRTLSTLADLGLIFFE 111 (144)
T ss_pred HHHHHHHHHhcCcccHHHHHHHhCc----chHHHHHHHHHHHhcCeEEEe
Confidence 3557778876 89999999999999 899999999999999999987
No 256
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=92.87 E-value=0.077 Score=33.46 Aligned_cols=42 Identities=17% Similarity=0.160 Sum_probs=36.0
Q ss_pred cccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 11 KKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 11 lf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
+++.|.+ ++.|..+|++.+++ .+..+.+.|+.|...|++.+.
T Consensus 5 il~~l~~~~~~s~~~l~~~l~~----s~~tv~~~l~~L~~~g~i~~~ 47 (53)
T smart00420 5 ILELLAQQGKVSVEELAELLGV----SEMTIRRDLNKLEEQGLLTRV 47 (53)
T ss_pred HHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 3444543 67899999999999 799999999999999999987
No 257
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=92.73 E-value=0.2 Score=42.75 Aligned_cols=87 Identities=20% Similarity=0.387 Sum_probs=60.5
Q ss_pred CCcceEEeecCCce-------------------eeeehh-HHHhh-----CCCCCce--eEEeCCCCcc---CCc-c--c
Q 043063 159 KGVKRLVDVGGSAG-------------------INFDLP-EVVAE-----APSIPGV--THIGGDMFKS---IPA-A--D 205 (301)
Q Consensus 159 ~~~~~vlDvGgG~g-------------------~~~Dlp-~v~~~-----a~~~~ri--~~~~gd~~~~---~p~-~--D 205 (301)
.+..+++|+|.|+. +-+|.. .++.. .++.+.+ .-+++|+... +|. + =
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 35789999999993 345653 22222 1223444 4466787654 454 2 5
Q ss_pred EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEE-ecccc
Q 043063 206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIA-CEPVL 245 (301)
Q Consensus 206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli-~e~~~ 245 (301)
.+++...|.++++++|..+|.+++.+|+||-.+++ .|.+.
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k 197 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRK 197 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccC
Confidence 77888999999999999999999999999976665 34443
No 258
>PHA02943 hypothetical protein; Provisional
Probab=92.59 E-value=0.12 Score=40.45 Aligned_cols=55 Identities=18% Similarity=0.164 Sum_probs=43.4
Q ss_pred ccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063 10 GKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE 69 (301)
Q Consensus 10 glf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 69 (301)
.|.+.|..|..|..|||+++|+ ....++..|+.|...|.+.+.+ .|.-..|++++
T Consensus 15 eILE~Lk~G~~TtseIAkaLGl----S~~qa~~~LyvLErEG~VkrV~-~G~~tyw~l~~ 69 (165)
T PHA02943 15 KTLRLLADGCKTTSRIANKLGV----SHSMARNALYQLAKEGMVLKVE-IGRAAIWCLDE 69 (165)
T ss_pred HHHHHHhcCCccHHHHHHHHCC----CHHHHHHHHHHHHHcCceEEEe-ecceEEEEECh
Confidence 4677786789999999999999 6889999999999999999873 11122455555
No 259
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=92.57 E-value=0.1 Score=41.11 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=47.2
Q ss_pred cccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhh
Q 043063 9 GGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLV 75 (301)
Q Consensus 9 lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~ 75 (301)
..++..|. .++.|..+||+.+++ ++..+.++++.|+..|+|.+.... .+. ...+|+.++.+.
T Consensus 43 ~~vL~~l~~~~~~t~~eLa~~l~i----~~~tvsr~l~~Le~~GlI~R~~~~-~DrR~~~l~LT~~G~~~~ 108 (144)
T PRK11512 43 FKVLCSIRCAACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNP-NDKRGVLVKLTTSGAAIC 108 (144)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCc-ccCCeeEeEEChhHHHHH
Confidence 34455565 378999999999999 899999999999999999987421 111 367777776554
No 260
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=92.51 E-value=0.2 Score=41.89 Aligned_cols=86 Identities=15% Similarity=0.216 Sum_probs=57.2
Q ss_pred CCCcceEEeecCCcee--------------eeeh-hHHHhhCCC-----CCceeEEeCCCC---ccCCc--ccEeeHhhh
Q 043063 158 FKGVKRLVDVGGSAGI--------------NFDL-PEVVAEAPS-----IPGVTHIGGDMF---KSIPA--ADAIFMKWV 212 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g~--------------~~Dl-p~v~~~a~~-----~~ri~~~~gd~~---~~~p~--~D~v~~~~v 212 (301)
+++..|||.||-|-|+ +++- |.|.+..+. .++|....|-.. ..+|. .|-|+.--.
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech
Confidence 4677899999999973 4554 778877654 467877777433 23554 265443221
Q ss_pred hccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063 213 LTTWTDDECKLIMENCYKAIPAGGKLIACEPVL 245 (301)
Q Consensus 213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~ 245 (301)
- . .-++...+-+.+.+.|||+|++-.+.-..
T Consensus 179 ~-e-~yEdl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 179 S-E-LYEDLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred h-h-HHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence 1 1 12456788889999999999887776544
No 261
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=92.40 E-value=0.088 Score=48.49 Aligned_cols=76 Identities=14% Similarity=0.114 Sum_probs=46.9
Q ss_pred cceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC----cccEeeHhhhhccC
Q 043063 161 VKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP----AADAIFMKWVLTTW 216 (301)
Q Consensus 161 ~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p----~~D~v~~~~vlh~~ 216 (301)
..+|||++||+| +.+|. |..++.+++ .++++|+.+|+.+..+ ..|+|++-=---..
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~ 313 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRGI 313 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCCC
Confidence 468999999996 46786 667766553 2579999999865322 24887765221011
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063 217 TDDECKLIMENCYKAIPAGGKLIAC 241 (301)
Q Consensus 217 ~d~~~~~iL~~~~~aL~pgg~lli~ 241 (301)
..++++.+. .++|++.++|.
T Consensus 314 ----~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 314 ----GKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred ----cHHHHHHHH-hcCCCeEEEEE
Confidence 134455554 36787655543
No 262
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=92.26 E-value=0.11 Score=43.47 Aligned_cols=58 Identities=22% Similarity=0.299 Sum_probs=46.4
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
++.++..|.. ++.|..+||+.+++ ++..+.+.|+.|...|++.+.+. ....|.+|+.+
T Consensus 145 ~~~IL~~l~~~g~~s~~eia~~l~i----s~stv~r~L~~Le~~GlI~r~~~--r~~~~~lT~~G 203 (203)
T TIGR01884 145 ELKVLEVLKAEGEKSVKNIAKKLGK----SLSTISRHLRELEKKGLVEQKGR--KGKRYSLTKLG 203 (203)
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEcC--CccEEEeCCCC
Confidence 4556677765 78899999999999 78899999999999999998831 13468887653
No 263
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=92.10 E-value=0.56 Score=44.51 Aligned_cols=89 Identities=20% Similarity=0.332 Sum_probs=55.5
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CCc-ccEee--
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IPA-ADAIF-- 208 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p~-~D~v~-- 208 (301)
.....+|||+.+|.| +..|. +..+...++ ..+|.+...|.... +|. .|.|+
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 456689999999885 23465 443333221 25677777775432 343 37777
Q ss_pred --Hh---------hhhccCChHHH-------HHHHHHHHHhCCCCCEEEEeccccC
Q 043063 209 --MK---------WVLTTWTDDEC-------KLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 209 --~~---------~vlh~~~d~~~-------~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
|+ .+...|+.++. .+||+++.+.|+|||+|+-..+...
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 44 22334554443 6899999999999998876665443
No 264
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=91.95 E-value=0.25 Score=42.86 Aligned_cols=61 Identities=25% Similarity=0.489 Sum_probs=43.3
Q ss_pred hHHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCccc
Q 043063 148 MTSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPAAD 205 (301)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~~D 205 (301)
...++..-+ .+....||+||.|+| +.++. |.++++..+ ....+++.||++.- +|-.|
T Consensus 47 ~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~fd 125 (315)
T KOG0820|consen 47 IDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRFD 125 (315)
T ss_pred HHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcccc
Confidence 445666664 778889999999997 33454 555555332 37899999999975 78777
Q ss_pred EeeH
Q 043063 206 AIFM 209 (301)
Q Consensus 206 ~v~~ 209 (301)
+++.
T Consensus 126 ~cVs 129 (315)
T KOG0820|consen 126 GCVS 129 (315)
T ss_pred eeec
Confidence 6654
No 265
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=91.58 E-value=0.066 Score=40.56 Aligned_cols=49 Identities=16% Similarity=0.193 Sum_probs=43.8
Q ss_pred ccccccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 4 NECRDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 4 ~~a~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
++.+...|.+...+ |..|..++...+|+ +...+++.++.|++.|-|...
T Consensus 10 r~eLk~rIvElVRe~GRiTi~ql~~~TGa----sR~Tvk~~lreLVa~G~l~~~ 59 (127)
T PF06163_consen 10 REELKARIVELVREHGRITIKQLVAKTGA----SRNTVKRYLRELVARGDLYRH 59 (127)
T ss_pred HHHHHHHHHHHHHHcCCccHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEeC
Confidence 55667788888876 99999999999999 899999999999999999877
No 266
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=91.55 E-value=0.26 Score=37.53 Aligned_cols=61 Identities=23% Similarity=0.217 Sum_probs=47.8
Q ss_pred cccccCCCCCCHHHHHHHhC-CCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhh
Q 043063 11 KKGRLANTPLSASQILTRIL-PSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLV 75 (301)
Q Consensus 11 lf~~L~~g~~t~~ela~~~~-~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~ 75 (301)
|.-.|..|+....||.+.++ + .+.-|.+-|+.|...|++.+..-.. ..-.|++|+.++.|.
T Consensus 28 Il~~L~~g~~RF~eL~r~i~~I----s~k~Ls~~Lk~Le~~Glv~R~~~~~~PprveY~LT~~G~~L~ 91 (120)
T COG1733 28 ILRDLFDGPKRFNELRRSIGGI----SPKMLSRRLKELEEDGLVERVVYPEEPPRVEYRLTEKGRDLL 91 (120)
T ss_pred HHHHHhcCCCcHHHHHHHcccc----CHHHHHHHHHHHHHCCCEEeeecCCCCceeEEEEhhhHHHHH
Confidence 34455568999999999998 8 7999999999999999999874210 123599999887665
No 267
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=91.51 E-value=0.34 Score=37.72 Aligned_cols=45 Identities=11% Similarity=0.214 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC--eEecC
Q 043063 17 NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER--KYSLT 68 (301)
Q Consensus 17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~--~y~~t 68 (301)
+|++|++|||-..|+ ..+.+..-|-++++-|-|.+.. .+| +|++.
T Consensus 4 ~Ga~T~eELA~~FGv----ttRkvaStLa~~ta~Grl~Rv~---q~gkfRy~iP 50 (155)
T PF07789_consen 4 EGAKTAEELAGKFGV----TTRKVASTLAMVTATGRLIRVN---QNGKFRYCIP 50 (155)
T ss_pred cCcccHHHHHHHhCc----chhhhHHHHHHHHhcceeEEec---CCCceEEeCC
Confidence 499999999999999 7999999999999999999884 334 47764
No 268
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=91.43 E-value=0.38 Score=31.74 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=33.5
Q ss_pred CCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEec
Q 043063 20 LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSL 67 (301)
Q Consensus 20 ~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~ 67 (301)
.|..+||..+++ +...+.+.|..|...|+|... .+..|.+
T Consensus 26 ~~~~~la~~~~i----s~~~v~~~l~~L~~~G~i~~~----~~~~~~l 65 (66)
T cd07377 26 PSERELAEELGV----SRTTVREALRELEAEGLVERR----PGRGTFV 65 (66)
T ss_pred CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec----CCCeEEe
Confidence 369999999999 788999999999999999876 2445554
No 269
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=91.42 E-value=0.63 Score=35.63 Aligned_cols=81 Identities=20% Similarity=0.368 Sum_probs=53.1
Q ss_pred EEeecCCcee---------------eeeh-hHHHhhCCCC---Cc---eeEEeCCCCc---cCCc---ccEeeHhhhhcc
Q 043063 164 LVDVGGSAGI---------------NFDL-PEVVAEAPSI---PG---VTHIGGDMFK---SIPA---ADAIFMKWVLTT 215 (301)
Q Consensus 164 vlDvGgG~g~---------------~~Dl-p~v~~~a~~~---~r---i~~~~gd~~~---~~p~---~D~v~~~~vlh~ 215 (301)
++|+|||+|. ++|. +..+..+... .. +.+..+|... ++.. .|++ .....++
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVLH 130 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeehh
Confidence 9999999973 1344 3333332211 11 6788888765 2333 4888 5555544
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEeccccCC
Q 043063 216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPD 247 (301)
Q Consensus 216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~ 247 (301)
+.+ ...+++.+.+.++|+|.+++.+.....
T Consensus 131 ~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 131 LLP--PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred cCC--HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 444 568999999999999999988876553
No 270
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=91.41 E-value=0.19 Score=37.51 Aligned_cols=53 Identities=23% Similarity=0.352 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhh
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLV 75 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~ 75 (301)
++.|..+||..+++ ++..+.++++.|+..|+|.+.+.. .+. .+.+|+.+..+.
T Consensus 42 ~~~t~~eL~~~l~~----~~stvs~~i~~Le~kg~I~r~~~~-~D~R~~~i~lT~~G~~~~ 97 (109)
T TIGR01889 42 GKLTLKEIIKEILI----KQSALVKIIKKLSKKGYLSKERSE-DDERKVIISINKEQRSKI 97 (109)
T ss_pred CcCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeccCCc-ccCCeEEEEECHHHHHHH
Confidence 68999999999999 899999999999999999987432 122 366777776544
No 271
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=91.37 E-value=0.36 Score=35.11 Aligned_cols=44 Identities=7% Similarity=0.005 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT 68 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 68 (301)
.++|-.|||+.+|+ ++..+.+.|..|...|+|.+.+ .-+.++.|
T Consensus 46 ~~is~~eLa~~~g~----sr~tVsr~L~~Le~~GlI~r~~---~~~~~~~n 89 (95)
T TIGR01610 46 DRVTATVIAELTGL----SRTHVSDAIKSLARRRIIFRQG---MMGIVGVN 89 (95)
T ss_pred CccCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeeec---CCceeecC
Confidence 57899999999999 7889999999999999999872 23678776
No 272
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=91.28 E-value=0.11 Score=38.57 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=40.5
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.+..|+..|.. ++.|..+||+.+|+ ++..+.+.++.|...|++.+.
T Consensus 4 ~D~~il~~L~~~~~~~~~~la~~l~~----s~~tv~~~l~~L~~~g~i~~~ 50 (108)
T smart00344 4 IDRKILEELQKDARISLAELAKKVGL----SPSTVHNRVKRLEEEGVIKGY 50 (108)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeece
Confidence 45677888875 78999999999999 799999999999999999854
No 273
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=91.25 E-value=0.26 Score=47.27 Aligned_cols=82 Identities=16% Similarity=0.286 Sum_probs=51.6
Q ss_pred CcceEEeecCCce---------------eeeeh--hHHHhhCCC-----CCceeEEeCCCCc--c-CCcc--cEeeHhhh
Q 043063 160 GVKRLVDVGGSAG---------------INFDL--PEVVAEAPS-----IPGVTHIGGDMFK--S-IPAA--DAIFMKWV 212 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dl--p~v~~~a~~-----~~ri~~~~gd~~~--~-~p~~--D~v~~~~v 212 (301)
....+||||||.| +++|. +.+....++ ..++.++.+|+.. . +|.. |-+++.+-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 3578999999996 56675 333322221 3678888887631 2 5543 55544332
Q ss_pred hccCChHH-------HHHHHHHHHHhCCCCCEEEEec
Q 043063 213 LTTWTDDE-------CKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 213 lh~~~d~~-------~~~iL~~~~~aL~pgg~lli~e 242 (301)
= .|+... ...+|+.+++.|+|||.|.+..
T Consensus 427 D-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 D-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred C-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 1 243321 3478999999999999888654
No 274
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=91.24 E-value=0.44 Score=41.34 Aligned_cols=78 Identities=13% Similarity=0.222 Sum_probs=47.7
Q ss_pred hHHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhC----CCCCceeEEeCCCCcc-CCc--ccE
Q 043063 148 MTSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEA----PSIPGVTHIGGDMFKS-IPA--ADA 206 (301)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a----~~~~ri~~~~gd~~~~-~p~--~D~ 206 (301)
.+.+++..+ .....+|++||+|.| +.+++ +..++.- ...++++++.+|+.+- +|+ .-.
T Consensus 19 ~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~ 97 (259)
T COG0030 19 IDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPY 97 (259)
T ss_pred HHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCC
Confidence 355666664 666789999999997 45554 3333332 2358999999999875 664 223
Q ss_pred eeHhhhhccCChHHHHHHHH
Q 043063 207 IFMKWVLTTWTDDECKLIME 226 (301)
Q Consensus 207 v~~~~vlh~~~d~~~~~iL~ 226 (301)
.+.++.-++.+-+-..++|+
T Consensus 98 ~vVaNlPY~Isspii~kll~ 117 (259)
T COG0030 98 KVVANLPYNISSPILFKLLE 117 (259)
T ss_pred EEEEcCCCcccHHHHHHHHh
Confidence 34445555555443333333
No 275
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=91.10 E-value=0.44 Score=30.75 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=31.3
Q ss_pred CC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 19 PL-SASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 19 ~~-t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.+ |..+||+.+|+ ....+++.|+.|...|++...
T Consensus 19 ~l~s~~~la~~~~v----s~~tv~~~l~~L~~~g~i~~~ 53 (60)
T smart00345 19 KLPSERELAAQLGV----SRTTVREALSRLEAEGLVQRR 53 (60)
T ss_pred cCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 45 89999999999 788999999999999999877
No 276
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=91.07 E-value=0.26 Score=28.03 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=25.7
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcce
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVF 53 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l 53 (301)
|+|-.|||..+|+ .+.-+.|.|..|...|++
T Consensus 2 ~mtr~diA~~lG~----t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL----TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS-----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC----cHHHHHHHHHHHHHcCCC
Confidence 5788999999999 788999999999998875
No 277
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=91.05 E-value=0.23 Score=42.08 Aligned_cols=94 Identities=12% Similarity=0.213 Sum_probs=64.3
Q ss_pred cccccccccC--CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch-hhhcCCCCCCh
Q 043063 7 RDGGKKGRLA--NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK-SLVTDAEGQSY 83 (301)
Q Consensus 7 ~~lglf~~L~--~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~-~l~~~~~~~~~ 83 (301)
.+..|+..|. ++...-.|||+.+|+ .+.++...++-|+..|++++. ..++|..|..+. .+..+-+ .+
T Consensus 11 t~fqIL~ei~~~qp~v~q~eIA~~lgi----T~QaVsehiK~Lv~eG~i~~~----gR~~Y~iTkkG~e~l~~~~~--dl 80 (260)
T COG1497 11 TRFQILSEIAVRQPRVKQKEIAKKLGI----TLQAVSEHIKELVKEGLIEKE----GRGEYEITKKGAEWLLEQLS--DL 80 (260)
T ss_pred hHHHHHHHHHHhCCCCCHHHHHHHcCC----CHHHHHHHHHHHHhccceeec----CCeeEEEehhHHHHHHHHHH--HH
Confidence 3444445554 355788999999999 799999999999999999997 477999999985 4443322 35
Q ss_pred hHHHHhhcch-hHHhhhhhHHH-hhcCCC
Q 043063 84 APYVLQHHQD-ALMSAWPLVHE-AILDPT 110 (301)
Q Consensus 84 ~~~~~~~~~~-~~~~~~~~l~~-~l~~g~ 110 (301)
+.++...... .+...|..+++ -++.|.
T Consensus 81 r~f~~ev~~~l~~~~vw~AIA~edI~~Gd 109 (260)
T COG1497 81 RRFSEEVELVLDYVMVWTAIAKEDIKEGD 109 (260)
T ss_pred HHHHHHHHHHHhhHHHHHHhhHhhhccCC
Confidence 5555443111 13356776654 356666
No 278
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=90.97 E-value=0.17 Score=41.39 Aligned_cols=43 Identities=12% Similarity=0.060 Sum_probs=38.7
Q ss_pred ccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 10 GKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 10 glf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.|+++|.. |++|.++||..+|+ +...++++|..|...|++...
T Consensus 26 ~Vl~~L~~~g~~tdeeLA~~Lgi----~~~~VRk~L~~L~e~gLv~~~ 69 (178)
T PRK06266 26 EVLKALIKKGEVTDEEIAEQTGI----KLNTVRKILYKLYDARLADYK 69 (178)
T ss_pred HHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 47787765 89999999999999 799999999999999999954
No 279
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=90.83 E-value=0.17 Score=36.30 Aligned_cols=64 Identities=28% Similarity=0.319 Sum_probs=45.0
Q ss_pred cccccccccCC---CCCCHHHHHHHhCCCCCCCcccHHHHHH----------HHhcCcce-eccccccCCCeEecChhch
Q 043063 7 RDGGKKGRLAN---TPLSASQILTRILPSGGGDAENLQRILR----------LLTNYGVF-SEHREFGGERKYSLTEIGK 72 (301)
Q Consensus 7 ~~lglf~~L~~---g~~t~~ela~~~~~~~~~~~~~l~~lL~----------~L~~~g~l-~~~~~~~~~~~y~~t~~s~ 72 (301)
++..|+..|.. .+.+..|||+.+++ ++..+..-|+ .|+.+|++ ++.... ..-.|++|+.++
T Consensus 10 ~R~~vl~~L~~~yp~~~~~~eIar~v~~----~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~-g~k~Y~lT~~G~ 84 (90)
T PF07381_consen 10 VRKKVLEYLCSIYPEPAYPSEIARSVGS----DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEKG-GFKYYRLTEKGK 84 (90)
T ss_pred HHHHHHHHHHHcCCCcCCHHHHHHHHCC----CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeecC-CeeEEEeChhhh
Confidence 34556667753 57899999999999 7777776665 58999999 333211 223699999876
Q ss_pred hhh
Q 043063 73 SLV 75 (301)
Q Consensus 73 ~l~ 75 (301)
.++
T Consensus 85 ~~~ 87 (90)
T PF07381_consen 85 RIA 87 (90)
T ss_pred hHH
Confidence 543
No 280
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.44 E-value=0.13 Score=40.19 Aligned_cols=61 Identities=20% Similarity=0.306 Sum_probs=42.6
Q ss_pred hcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCCC-----CceeEEeCCCCccCCc---ccEeeH
Q 043063 153 DGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPA---ADAIFM 209 (301)
Q Consensus 153 ~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~-----~ri~~~~gd~~~~~p~---~D~v~~ 209 (301)
+.|+++ .+..+.|+|||.| ++||+ |+.++.++++ -++.+...|+.++.+. .|..++
T Consensus 42 ~Tygdi-Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtavi 120 (185)
T KOG3420|consen 42 NTYGDI-EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVI 120 (185)
T ss_pred hhhccc-cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEe
Confidence 344434 3478999999995 68898 8888887653 4678888888776443 377766
Q ss_pred hhhhc
Q 043063 210 KWVLT 214 (301)
Q Consensus 210 ~~vlh 214 (301)
..-+.
T Consensus 121 NppFG 125 (185)
T KOG3420|consen 121 NPPFG 125 (185)
T ss_pred cCCCC
Confidence 65543
No 281
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=90.41 E-value=1.1 Score=39.21 Aligned_cols=94 Identities=17% Similarity=0.220 Sum_probs=63.9
Q ss_pred CCceeEEeCCCCccC-Cc-----ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhh
Q 043063 187 IPGVTHIGGDMFKSI-PA-----ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLE 260 (301)
Q Consensus 187 ~~ri~~~~gd~~~~~-p~-----~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~ 260 (301)
..+++...|||.+-. +. .|+|+..+.+-- -+.....|+.+++.|+|||..+=+-+..=...
T Consensus 143 ~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~----------- 209 (270)
T PF07942_consen 143 PSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKPGGYWINFGPLLYHFE----------- 209 (270)
T ss_pred CCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhccCCEEEecCCccccCC-----------
Confidence 578999999998752 22 288887765521 23478999999999999996664444332110
Q ss_pred ccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEE
Q 043063 261 GDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR 297 (301)
Q Consensus 261 ~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~ 297 (301)
+.. . .....-+.+.+|++++.+..||+.++...
T Consensus 210 -~~~-~--~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 210 -PMS-I--PNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred -CCC-C--CCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 000 0 01123567999999999999999987655
No 282
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=90.18 E-value=0.25 Score=45.19 Aligned_cols=87 Identities=18% Similarity=0.200 Sum_probs=61.8
Q ss_pred CcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc--ccEeeHhhhhc
Q 043063 160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA--ADAIFMKWVLT 214 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh 214 (301)
+...++|+|||.| +++|. +.-+..+.. .+.-.++.+|+... +++ .|.+.+..+..
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~ 189 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC 189 (364)
T ss_pred ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecc
Confidence 3447889999994 23333 222222111 24555688888765 555 49999999998
Q ss_pred cCChHHHHHHHHHHHHhCCCCCEEEEeccccCCC
Q 043063 215 TWTDDECKLIMENCYKAIPAGGKLIACEPVLPDD 248 (301)
Q Consensus 215 ~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~ 248 (301)
+.++. .+++++++++++|||..++.|.+....
T Consensus 190 ~~~~~--~~~y~Ei~rv~kpGG~~i~~e~i~~~~ 221 (364)
T KOG1269|consen 190 HAPDL--EKVYAEIYRVLKPGGLFIVKEWIKTAK 221 (364)
T ss_pred cCCcH--HHHHHHHhcccCCCceEEeHHHHHhhh
Confidence 88886 499999999999999999999887543
No 283
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=90.05 E-value=0.16 Score=41.90 Aligned_cols=75 Identities=20% Similarity=0.321 Sum_probs=50.1
Q ss_pred eEEeecCCce---------------eeeeh-hH---HHhhCC---CCCceeEEeCCCCcc-CCc-ccEeeHhhhhccCCh
Q 043063 163 RLVDVGGSAG---------------INFDL-PE---VVAEAP---SIPGVTHIGGDMFKS-IPA-ADAIFMKWVLTTWTD 218 (301)
Q Consensus 163 ~vlDvGgG~g---------------~~~Dl-p~---v~~~a~---~~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~~~d 218 (301)
+++|||.|.| +.+|. .. .+..+. ..++++++.+.+.+. .+. .|+++++.+- +
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~----~ 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA----P 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS----S
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc----C
Confidence 7999999996 23343 11 111111 147899999888762 333 5999998864 2
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 219 DECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 219 ~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
...+++-+...+++||+++..-.
T Consensus 127 --l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 127 --LDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp --HHHHHHHHGGGEEEEEEEEEEES
T ss_pred --HHHHHHHHHHhcCCCCEEEEEcC
Confidence 34788888889999999988754
No 284
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=89.91 E-value=0.28 Score=39.38 Aligned_cols=44 Identities=14% Similarity=0.097 Sum_probs=38.7
Q ss_pred cccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 9 GGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 9 lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
..|+++|. .|.+|-++||..+|+ +...++++|..|...|++...
T Consensus 17 v~Vl~aL~~~~~~tdEeLa~~Lgi----~~~~VRk~L~~L~e~~Lv~~~ 61 (158)
T TIGR00373 17 GLVLFSLGIKGEFTDEEISLELGI----KLNEVRKALYALYDAGLADYK 61 (158)
T ss_pred HHHHHHHhccCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCceee
Confidence 34677776 589999999999999 899999999999999999654
No 285
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=89.91 E-value=0.28 Score=33.07 Aligned_cols=58 Identities=26% Similarity=0.334 Sum_probs=42.7
Q ss_pred cccccC--CCCCCHHHHHHHhCCCCCC-CcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063 11 KKGRLA--NTPLSASQILTRILPSGGG-DAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK 72 (301)
Q Consensus 11 lf~~L~--~g~~t~~ela~~~~~~~~~-~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~ 72 (301)
|++.|. ++|++..+|++.++...-. .+..+++.|++|...|++.+. ..+.+.+|+.+.
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~~----g~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRKV----GRQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCcccc----CCcccccCHHHH
Confidence 455564 4799999999998763110 257999999999999988876 355677887664
No 286
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=89.86 E-value=0.27 Score=34.13 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=36.2
Q ss_pred cccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 13 GRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 13 ~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
|+|.. |..++.+||.++++ ++..++.+|..|+.+|-+++.
T Consensus 9 d~l~~~gr~s~~~Ls~~~~~----p~~~VeaMLe~l~~kGkverv 49 (78)
T PRK15431 9 DLLALRGRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_pred HHHHHcCcccHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 55654 88999999999999 799999999999999999987
No 287
>PRK05638 threonine synthase; Validated
Probab=89.73 E-value=0.3 Score=46.04 Aligned_cols=65 Identities=18% Similarity=0.206 Sum_probs=51.2
Q ss_pred cccccccccCCCCCCHHHHHHHhC--CCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063 7 RDGGKKGRLANTPLSASQILTRIL--PSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV 75 (301)
Q Consensus 7 ~~lglf~~L~~g~~t~~ela~~~~--~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 75 (301)
.++-|+..|.+++.+..||++.++ + ....+.+.|+.|...|+++.....+..-.|++|+.++.+.
T Consensus 372 ~r~~IL~~L~~~~~~~~el~~~l~~~~----s~~~v~~hL~~Le~~GLV~~~~~~g~~~~Y~Lt~~g~~~l 438 (442)
T PRK05638 372 TKLEILKILSEREMYGYEIWKALGKPL----KYQAVYQHIKELEELGLIEEAYRKGRRVYYKLTEKGRRLL 438 (442)
T ss_pred hHHHHHHHHhhCCccHHHHHHHHcccC----CcchHHHHHHHHHHCCCEEEeecCCCcEEEEECcHHHHHH
Confidence 366788899989999999999998 6 5789999999999999997531111233599999886543
No 288
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=89.34 E-value=0.38 Score=41.95 Aligned_cols=81 Identities=19% Similarity=0.324 Sum_probs=49.1
Q ss_pred HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhh----CCCCCceeEEeCCCCcc-CCc----cc
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAE----APSIPGVTHIGGDMFKS-IPA----AD 205 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~----a~~~~ri~~~~gd~~~~-~p~----~D 205 (301)
+.+++..+ ..+...|||||+|.| +++|. +..++. ....++++++.+|+++- .+. ..
T Consensus 20 ~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~ 98 (262)
T PF00398_consen 20 DKIVDALD-LSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQP 98 (262)
T ss_dssp HHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSE
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCc
Confidence 45555554 667889999999997 34554 333333 22368999999999975 444 34
Q ss_pred EeeHhhhhccCChHHHHHHHHHHHHhCCC
Q 043063 206 AIFMKWVLTTWTDDECKLIMENCYKAIPA 234 (301)
Q Consensus 206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~p 234 (301)
+.++++.-++.+ ..++.++...-..
T Consensus 99 ~~vv~NlPy~is----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 99 LLVVGNLPYNIS----SPILRKLLELYRF 123 (262)
T ss_dssp EEEEEEETGTGH----HHHHHHHHHHGGG
T ss_pred eEEEEEecccch----HHHHHHHhhcccc
Confidence 455555443333 3566666653333
No 289
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=89.18 E-value=0.39 Score=36.05 Aligned_cols=61 Identities=25% Similarity=0.269 Sum_probs=42.1
Q ss_pred ccccccccCC--CCCCHHHHHHHhCCCCC-CCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063 8 DGGKKGRLAN--TPLSASQILTRILPSGG-GDAENLQRILRLLTNYGVFSEHREFGGERKYSLT 68 (301)
Q Consensus 8 ~lglf~~L~~--g~~t~~ela~~~~~~~~-~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 68 (301)
+.-|++.|.. ++.|+++|.+.+.-..| -+..-+.|.|+.|+..|++.+...++....|.++
T Consensus 3 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~~~~~~~~y~~~ 66 (116)
T cd07153 3 RLAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIELGDGKARYELN 66 (116)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEEeCCCceEEEeC
Confidence 3456777753 68999999999843211 1567889999999999999987422112356553
No 290
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=89.07 E-value=0.42 Score=30.68 Aligned_cols=38 Identities=8% Similarity=-0.002 Sum_probs=29.8
Q ss_pred CccccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHH
Q 043063 3 DNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRL 46 (301)
Q Consensus 3 ~~~a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~ 46 (301)
+.+|.++|-|+.=. ..|..+||+.+|+ .+..+...||-
T Consensus 9 L~~A~~~GYfd~PR--~~tl~elA~~lgi----s~st~~~~LRr 46 (53)
T PF04967_consen 9 LKAAYELGYFDVPR--RITLEELAEELGI----SKSTVSEHLRR 46 (53)
T ss_pred HHHHHHcCCCCCCC--cCCHHHHHHHhCC----CHHHHHHHHHH
Confidence 46899999999764 5799999999999 46566655554
No 291
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=88.98 E-value=0.55 Score=30.96 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 17 NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.++.+..+||+.+|+ .+..+...++-|...|+++..
T Consensus 20 ~~~v~~~~iA~~L~v----s~~tvt~ml~~L~~~GlV~~~ 55 (60)
T PF01325_consen 20 GGPVRTKDIAERLGV----SPPTVTEMLKRLAEKGLVEYE 55 (60)
T ss_dssp TSSBBHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred CCCccHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEec
Confidence 478999999999999 688999999999999999987
No 292
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=88.90 E-value=0.54 Score=43.28 Aligned_cols=60 Identities=8% Similarity=0.142 Sum_probs=51.4
Q ss_pred CCceeEEeCCCCcc---CCc-c-cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 187 IPGVTHIGGDMFKS---IPA-A-DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 187 ~~ri~~~~gd~~~~---~p~-~-D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
.+||+++.+++.+- .|. . |.++++.++--+++++..++++++.++++|||+++.-....+
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 48999999988763 443 3 999999999888999999999999999999999998877554
No 293
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=88.89 E-value=0.68 Score=31.72 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=37.3
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI 70 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 70 (301)
+.|-++||..+|+ ....+.+.|+.|...|+++.. .+.+.....
T Consensus 28 ~lt~~~iA~~~g~----sr~tv~r~l~~l~~~g~I~~~-----~~~i~I~d~ 70 (76)
T PF13545_consen 28 PLTQEEIADMLGV----SRETVSRILKRLKDEGIIEVK-----RGKIIILDP 70 (76)
T ss_dssp ESSHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE-----TTEEEESSH
T ss_pred cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEc-----CCEEEECCH
Confidence 6799999999999 788999999999999999987 556666543
No 294
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=88.76 E-value=0.78 Score=37.28 Aligned_cols=46 Identities=24% Similarity=0.369 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHh--CCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 18 TPLSASQILTRI--LPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 18 g~~t~~ela~~~--~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
+..+.++||+++ ++ ...-++.-|+.|..+|++.++ ++|.|..|..+
T Consensus 38 ~~~d~~~iak~l~p~i----s~~ev~~sL~~L~~~gli~k~----~~g~y~~t~~~ 85 (171)
T PF14394_consen 38 FAPDPEWIAKRLRPKI----SAEEVRDSLEFLEKLGLIKKD----GDGKYVQTDKS 85 (171)
T ss_pred CCCCHHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEC----CCCcEEEecce
Confidence 344999999999 88 688999999999999999999 46799999754
No 295
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=88.52 E-value=0.49 Score=30.29 Aligned_cols=38 Identities=16% Similarity=0.353 Sum_probs=31.4
Q ss_pred ccccc--CCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcc
Q 043063 11 KKGRL--ANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGV 52 (301)
Q Consensus 11 lf~~L--~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~ 52 (301)
|+..| .+++.|.++||+.+++ ..+-+.+-+..|...|+
T Consensus 5 il~~L~~~~~~it~~eLa~~l~v----S~rTi~~~i~~L~~~~~ 44 (55)
T PF08279_consen 5 ILKLLLESKEPITAKELAEELGV----SRRTIRRDIKELREWGI 44 (55)
T ss_dssp HHHHHHHTTTSBEHHHHHHHCTS-----HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHcCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCC
Confidence 45566 2467999999999999 79999999999999993
No 296
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=88.49 E-value=0.64 Score=39.28 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=45.1
Q ss_pred ccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063 14 RLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV 75 (301)
Q Consensus 14 ~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 75 (301)
.+.+ ..+|..+||+.+++ ++..+.+.|+.|...|++++.... ....+++|+.++.+.
T Consensus 15 ~l~~~~~IS~~eLA~~L~i----S~~Tvsr~Lk~LEe~GlI~R~~~~-r~~~v~LTekG~~ll 72 (217)
T PRK14165 15 AVNNTVKISSSEFANHTGT----SSKTAARILKQLEDEGYITRTIVP-RGQLITITEKGLDVL 72 (217)
T ss_pred ccCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEEcC-CceEEEECHHHHHHH
Confidence 4443 45899999999999 799999999999999999987321 234688888886554
No 297
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=88.28 E-value=0.56 Score=38.94 Aligned_cols=59 Identities=14% Similarity=0.236 Sum_probs=35.2
Q ss_pred CceeEEeCCCCccCCcc-cEeeHhhhhccCChHH-----------HHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 188 PGVTHIGGDMFKSIPAA-DAIFMKWVLTTWTDDE-----------CKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 188 ~ri~~~~gd~~~~~p~~-D~v~~~~vlh~~~d~~-----------~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
.+|.++..+.+.-+|+. .--.++-+++.+||.. +..++.+..=.|++||.++.+.-+.+
T Consensus 117 ~ni~vlr~namk~lpn~f~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~e 187 (249)
T KOG3115|consen 117 PNISVLRTNAMKFLPNFFEKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKE 187 (249)
T ss_pred ccceeeeccchhhccchhhhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHH
Confidence 56777777766555641 2112223333344432 34567777788999999988876554
No 298
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=88.20 E-value=0.95 Score=35.43 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=45.8
Q ss_pred cccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhhc
Q 043063 11 KKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLVT 76 (301)
Q Consensus 11 lf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~~ 76 (301)
++..|.. ++.|..+||+.+++ ++..+.++++.|+..|+|++..... ..-.+.+|+.++.+..
T Consensus 36 vL~~l~~~~~~~t~~eLa~~l~~----~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 101 (144)
T PRK03573 36 TLHNIHQLPPEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLIS 101 (144)
T ss_pred HHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHHH
Confidence 3444542 45799999999999 8899999999999999999874210 0114778887766543
No 299
>PRK10870 transcriptional repressor MprA; Provisional
Probab=88.09 E-value=0.98 Score=36.88 Aligned_cols=62 Identities=19% Similarity=0.193 Sum_probs=47.0
Q ss_pred ccccccC---CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCC---CeEecChhchhhhc
Q 043063 10 GKKGRLA---NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGE---RKYSLTEIGKSLVT 76 (301)
Q Consensus 10 glf~~L~---~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~---~~y~~t~~s~~l~~ 76 (301)
.++-.|. .++.|..+||+.+++ ++..+.++++-|+..|+|++.... .+ -...+|+.++.+..
T Consensus 59 ~iL~~L~~~~~~~it~~eLa~~l~l----~~~tvsr~v~rLe~kGlV~R~~~~-~DrR~~~v~LT~~G~~~~~ 126 (176)
T PRK10870 59 MALITLESQENHSIQPSELSCALGS----SRTNATRIADELEKRGWIERRESD-NDRRCLHLQLTEKGHEFLR 126 (176)
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCC-CCCCeeEEEECHHHHHHHH
Confidence 3444453 356899999999999 788999999999999999987422 11 14778888876654
No 300
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=87.79 E-value=0.46 Score=45.45 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=55.1
Q ss_pred cccccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCC
Q 043063 5 ECRDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDA 78 (301)
Q Consensus 5 ~a~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~ 78 (301)
+..+..++..|.. ++.|..+||+.+++ ++..+.+.++.|.+.|++++... ....|.+|+.++.+....
T Consensus 5 t~~e~~vL~~L~~~~~~s~~eLA~~l~l----~~~tVt~~i~~Le~kGlV~~~~~--~~~~i~LTeeG~~~~~~g 73 (489)
T PRK04172 5 HPNEKKVLKALKELKEATLEELAEKLGL----PPEAVMRAAEWLEEKGLVKVEER--VEEVYVLTEEGKKYAEEG 73 (489)
T ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEEEee--eEEEEEECHHHHHHHHhc
Confidence 4556677888875 78999999999999 89999999999999999998721 124699999998665543
No 301
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=87.40 E-value=0.44 Score=38.40 Aligned_cols=46 Identities=15% Similarity=0.108 Sum_probs=40.7
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
++..|++.|.. +..|..+||+++|+ .+..+.+=++.|...|++...
T Consensus 15 ~D~~IL~~Lq~d~R~s~~eiA~~lgl----S~~tv~~Ri~rL~~~GvI~~~ 61 (164)
T PRK11169 15 IDRNILNELQKDGRISNVELSKRVGL----SPTPCLERVRRLERQGFIQGY 61 (164)
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 56778899975 88999999999999 688999999999999999854
No 302
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=87.36 E-value=0.43 Score=39.72 Aligned_cols=53 Identities=15% Similarity=0.109 Sum_probs=42.4
Q ss_pred cccccccccccCC------CCCCHHHHHHHhCCCCCCC-cccHHHHHHHHhcCcceeccccccCCCeEe
Q 043063 5 ECRDGGKKGRLAN------TPLSASQILTRILPSGGGD-AENLQRILRLLTNYGVFSEHREFGGERKYS 66 (301)
Q Consensus 5 ~a~~lglf~~L~~------g~~t~~ela~~~~~~~~~~-~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~ 66 (301)
+..+..|++.|.+ -+.|..|||+++|+ + +..+.+.|+.|...|++.+. ++.|+
T Consensus 5 t~~q~~iL~~l~~~~~~~~~~~~~~ela~~~~~----~s~~tv~~~l~~L~~~g~i~~~-----~~~~~ 64 (199)
T TIGR00498 5 TARQQEVLDLIRAHIESTGYPPSIREIARAVGL----RSPSAAEEHLKALERKGYIERD-----PGKPR 64 (199)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCC----CChHHHHHHHHHHHHCCCEecC-----CCCCC
Confidence 4555666777752 25789999999999 6 78999999999999999988 55655
No 303
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=87.34 E-value=1.8 Score=39.15 Aligned_cols=83 Identities=22% Similarity=0.211 Sum_probs=56.8
Q ss_pred CCCcceEEeecCCce-------------eeeehhHHHhhCCCCCceeEEeCCCCccCC-c--ccEeeHhhhhccCChHHH
Q 043063 158 FKGVKRLVDVGGSAG-------------INFDLPEVVAEAPSIPGVTHIGGDMFKSIP-A--ADAIFMKWVLTTWTDDEC 221 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g-------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~~p-~--~D~v~~~~vlh~~~d~~~ 221 (301)
+....++|||||++| +.+|.-.+.+.....+||+++.+|.+...| . .|++++=.+- .+.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve---~P~-- 283 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE---KPA-- 283 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc---CHH--
Confidence 346789999999995 567876666666668999999999988755 3 3887776653 333
Q ss_pred HHHHHHHHHhCCCC-CEEEEeccccC
Q 043063 222 KLIMENCYKAIPAG-GKLIACEPVLP 246 (301)
Q Consensus 222 ~~iL~~~~~aL~pg-g~lli~e~~~~ 246 (301)
++++-+.++|..| .+-.|+.--.+
T Consensus 284 -rva~lm~~Wl~~g~cr~aIfnLKlp 308 (357)
T PRK11760 284 -RVAELMAQWLVNGWCREAIFNLKLP 308 (357)
T ss_pred -HHHHHHHHHHhcCcccEEEEEEEcC
Confidence 5666666677766 34444444343
No 304
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=86.97 E-value=3.4 Score=38.09 Aligned_cols=56 Identities=13% Similarity=0.236 Sum_probs=37.8
Q ss_pred eEEeCCCCcc-CCcc--cEeeHhhhhccCCh--H----------------------H------------HHHHHHHHHHh
Q 043063 191 THIGGDMFKS-IPAA--DAIFMKWVLTTWTD--D----------------------E------------CKLIMENCYKA 231 (301)
Q Consensus 191 ~~~~gd~~~~-~p~~--D~v~~~~vlh~~~d--~----------------------~------------~~~iL~~~~~a 231 (301)
.-++|.|+.. +|.. ++++.+..||-++. + . -..+|+-=++-
T Consensus 147 ~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~E 226 (386)
T PLN02668 147 AGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQE 226 (386)
T ss_pred EecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467899987 8873 89999999885542 1 1 12344444566
Q ss_pred CCCCCEEEEeccccC
Q 043063 232 IPAGGKLIACEPVLP 246 (301)
Q Consensus 232 L~pgg~lli~e~~~~ 246 (301)
|.|||++++.-.-.+
T Consensus 227 LvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 227 MKRGGAMFLVCLGRT 241 (386)
T ss_pred hccCcEEEEEEecCC
Confidence 899999888765543
No 305
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=86.86 E-value=0.27 Score=35.54 Aligned_cols=57 Identities=18% Similarity=0.297 Sum_probs=44.7
Q ss_pred cccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhh
Q 043063 11 KKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLV 75 (301)
Q Consensus 11 lf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~ 75 (301)
|+....++.....-|.-.+++ +....++.++.|+..|++.... ++ .|.+|+.+.-|.
T Consensus 23 IL~~~~~~~~~~Tri~y~aNl----ny~~~~~yi~~L~~~Gli~~~~----~~~~~~y~lT~KG~~fl 82 (95)
T COG3432 23 ILKAISEGGIGITRIIYGANL----NYKRAQKYIEMLVEKGLIIKQD----NGRRKVYELTEKGKRFL 82 (95)
T ss_pred HHHHhcCCCCCceeeeeecCc----CHHHHHHHHHHHHhCCCEEecc----CCccceEEEChhHHHHH
Confidence 333344577777788888899 8999999999999999766662 44 699999997664
No 306
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=86.75 E-value=0.46 Score=38.76 Aligned_cols=92 Identities=17% Similarity=0.242 Sum_probs=46.3
Q ss_pred HHhhhcCCCCC--CcceEEeecCCce----------------eeeehhHHHhhCCCCCceeEEeCCCCcc---------C
Q 043063 149 TSILDGYDGFK--GVKRLVDVGGSAG----------------INFDLPEVVAEAPSIPGVTHIGGDMFKS---------I 201 (301)
Q Consensus 149 ~~~~~~~~~~~--~~~~vlDvGgG~g----------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~---------~ 201 (301)
.++.+.++-++ +..++||+||+.| +.+|+...- ....+.++.+|++++ .
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~----~~~~~~~i~~d~~~~~~~~~i~~~~ 85 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD----PLQNVSFIQGDITNPENIKDIRKLL 85 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG----S-TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc----cccceeeeecccchhhHHHhhhhhc
Confidence 44555553233 4589999999995 456764331 124455555665532 1
Q ss_pred C----cccEeeHhhhhcc-----C----ChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063 202 P----AADAIFMKWVLTT-----W----TDDECKLIMENCYKAIPAGGKLIACEPV 244 (301)
Q Consensus 202 p----~~D~v~~~~vlh~-----~----~d~~~~~iL~~~~~aL~pgg~lli~e~~ 244 (301)
+ ..|+|++=..... . +-+-+...|.-+.+.|+|||.+++--..
T Consensus 86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 1 1366655441111 1 1122334455555668999987765553
No 307
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=86.41 E-value=5.5 Score=35.52 Aligned_cols=93 Identities=15% Similarity=0.250 Sum_probs=62.1
Q ss_pred CceeEEeCCCCccCC--c----ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCC-CChHHhhhhhh
Q 043063 188 PGVTHIGGDMFKSIP--A----ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDS-NESQRTRALLE 260 (301)
Q Consensus 188 ~ri~~~~gd~~~~~p--~----~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~-~~~~~~~~~~~ 260 (301)
+..+..+|||.+-.+ + .|+|+..+.+- .-......|..+.+.|+|||..+-.-+..-.-. ..+ .
T Consensus 238 ~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g-~------ 308 (369)
T KOG2798|consen 238 GSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHG-V------ 308 (369)
T ss_pred CCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCC-C------
Confidence 445668899987533 3 28877775442 234578999999999999998876665442110 000 0
Q ss_pred ccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEE
Q 043063 261 GDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR 297 (301)
Q Consensus 261 ~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~ 297 (301)
. ...+-+.+.+++.++.+.-||++++..-
T Consensus 309 -~-------~~~siEls~edl~~v~~~~GF~~~ke~~ 337 (369)
T KOG2798|consen 309 -E-------NEMSIELSLEDLKRVASHRGFEVEKERG 337 (369)
T ss_pred -c-------ccccccccHHHHHHHHHhcCcEEEEeee
Confidence 0 1124567999999999999999988663
No 308
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=86.34 E-value=1.1 Score=38.80 Aligned_cols=58 Identities=17% Similarity=0.109 Sum_probs=46.1
Q ss_pred cccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhh
Q 043063 11 KKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSL 74 (301)
Q Consensus 11 lf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l 74 (301)
++-.|- -|+.|+.|||+.+|+ +...+..+|+.|...|+++..+ |.+..|+.-+....+
T Consensus 21 vY~aLl~~g~~tA~eis~~sgv----P~~kvY~vl~sLe~kG~v~~~~--g~P~~y~av~p~~~i 79 (247)
T COG1378 21 VYLALLCLGEATAKEISEASGV----PRPKVYDVLRSLEKKGLVEVIE--GRPKKYRAVPPEELI 79 (247)
T ss_pred HHHHHHHhCCccHHHHHHHcCC----CchhHHHHHHHHHHCCCEEeeC--CCCceEEeCCHHHHH
Confidence 344444 499999999999999 6779999999999999999873 246678887765543
No 309
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=86.27 E-value=1.1 Score=41.91 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI 70 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 70 (301)
.|.|.++|++++++ +++.++++|+.|...|++.+. +++.|.+...
T Consensus 309 ~~~t~~~La~~l~~----~~~~v~~iL~~L~~agLI~~~----~~g~~~l~rd 353 (412)
T PRK04214 309 KALDVDEIRRLEPM----GYDELGELLCELARIGLLRRG----ERGQWVLARD 353 (412)
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCeEec----CCCceEecCC
Confidence 58899999999999 899999999999999999977 3567877653
No 310
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=86.08 E-value=0.41 Score=38.07 Aligned_cols=46 Identities=9% Similarity=0.124 Sum_probs=40.6
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.+..|++.|.. +..|..+||+++|+ .+..+.+=++.|...|++...
T Consensus 10 ~D~~Il~~Lq~d~R~s~~eiA~~lgl----S~~tV~~Ri~rL~~~GvI~~~ 56 (153)
T PRK11179 10 LDRGILEALMENARTPYAELAKQFGV----SPGTIHVRVEKMKQAGIITGT 56 (153)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeeE
Confidence 56778888975 88999999999999 688999999999999999754
No 311
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=85.99 E-value=0.38 Score=40.52 Aligned_cols=48 Identities=13% Similarity=0.137 Sum_probs=41.3
Q ss_pred cccccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 5 ECRDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 5 ~a~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.+++..|++.|+. ||+.+.|||+++|+ +..-+..-++.|+..|+++..
T Consensus 22 S~vRv~Il~lL~~k~plNvneiAe~lgL----pqst~s~~ik~Le~aGlirT~ 70 (308)
T COG4189 22 SKVRVAILQLLHRKGPLNVNEIAEALGL----PQSTMSANIKVLEKAGLIRTE 70 (308)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHhCC----chhhhhhhHHHHHhcCceeee
Confidence 4577888999986 99999999999999 566777889999999999854
No 312
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=85.44 E-value=1.1 Score=37.69 Aligned_cols=76 Identities=21% Similarity=0.373 Sum_probs=47.5
Q ss_pred cceEEeecCCcee---------------eeeh-h---HHHhhCC---CCCceeEEeCCCCcc--CCc-ccEeeHhhhhcc
Q 043063 161 VKRLVDVGGSAGI---------------NFDL-P---EVVAEAP---SIPGVTHIGGDMFKS--IPA-ADAIFMKWVLTT 215 (301)
Q Consensus 161 ~~~vlDvGgG~g~---------------~~Dl-p---~v~~~a~---~~~ri~~~~gd~~~~--~p~-~D~v~~~~vlh~ 215 (301)
..+++|||.|.|. .+|. . .-++.+. ..++++++.+-+.+- .+. .|+|+++.+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 5899999999961 2222 0 0111111 147788888876543 234 7999988764
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063 216 WTDDECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 216 ~~d~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
+ ...++.-+...+++||.++..-
T Consensus 146 --~--L~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 146 --S--LNVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred --c--hHHHHHHHHHhcccCCcchhhh
Confidence 2 2366777777888888776443
No 313
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=85.31 E-value=1.1 Score=39.09 Aligned_cols=84 Identities=14% Similarity=0.130 Sum_probs=47.4
Q ss_pred CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeC----CCCccCC--cc--cE
Q 043063 158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGG----DMFKSIP--AA--DA 206 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~g----d~~~~~p--~~--D~ 206 (301)
+.....+||+|||+| +.+|. +..+..|.+ .+||.++.. |.+.+.| .+ |+
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dl 225 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDL 225 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeE
Confidence 445568999999996 45677 444444332 478888744 4444422 22 66
Q ss_pred eeHhhh--hcc-----------C-----------ChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063 207 IFMKWV--LTT-----------W-----------TDDECKLIMENCYKAIPAGGKLIAC 241 (301)
Q Consensus 207 v~~~~v--lh~-----------~-----------~d~~~~~iL~~~~~aL~pgg~lli~ 241 (301)
++.+-- .|+ + .-+....++.-+.+.|.|||.+.+-
T Consensus 226 lvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 226 LVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred EecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 554321 110 0 0112345666777888998866543
No 314
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=85.10 E-value=1 Score=39.99 Aligned_cols=51 Identities=24% Similarity=0.326 Sum_probs=38.1
Q ss_pred hHHhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC----CCceeEEeCCCCc
Q 043063 148 MTSILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS----IPGVTHIGGDMFK 199 (301)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~ 199 (301)
..++++.+. ..+...+||.+||.| +++|. |++++.+++ .+|++++.+||.+
T Consensus 8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~ 79 (296)
T PRK00050 8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN 79 (296)
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence 356666664 556679999999995 56897 888877754 2589999988764
No 315
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=85.03 E-value=0.55 Score=32.49 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=40.8
Q ss_pred cccccccccccCC---CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 5 ECRDGGKKGRLAN---TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 5 ~a~~lglf~~L~~---g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
|++...+++.++. ...+..+|+..+|. |++.+-..++.|...|++.+.
T Consensus 1 t~~~~~~Le~I~rsR~~Gi~q~~L~~~~~~----D~r~i~~~~k~L~~~gLI~k~ 51 (75)
T PF04182_consen 1 TDIQYCLLERIARSRYNGITQSDLSKLLGI----DPRSIFYRLKKLEKKGLIVKQ 51 (75)
T ss_pred CchHHHHHHHHHhcCCCCEehhHHHHHhCC----CchHHHHHHHHHHHCCCEEEE
Confidence 3455667777763 46788999999999 999999999999999999987
No 316
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=84.89 E-value=0.68 Score=39.79 Aligned_cols=85 Identities=14% Similarity=0.141 Sum_probs=49.4
Q ss_pred CcceEEeecCCce---------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCccCCc--ccEeeHhhhhccC
Q 043063 160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKSIPA--ADAIFMKWVLTTW 216 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p~--~D~v~~~~vlh~~ 216 (301)
...+|+|||||.- +.+|+ +..++-... ..+.++...|.+.+.|. +|+.++--++|.+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~l 184 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPCL 184 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHHH
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHHH
Confidence 4789999999991 45676 444433322 35677777799988664 6999999999988
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 217 TDDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 217 ~d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
.....-.. -++.++++ .-.++|..+...
T Consensus 185 e~q~~g~g-~~ll~~~~-~~~~vVSfPtrS 212 (251)
T PF07091_consen 185 ERQRRGAG-LELLDALR-SPHVVVSFPTRS 212 (251)
T ss_dssp HHHSTTHH-HHHHHHSC-ESEEEEEEES--
T ss_pred HHHhcchH-HHHHHHhC-CCeEEEeccccc
Confidence 76553222 22333343 246777666554
No 317
>PRK12423 LexA repressor; Provisional
Probab=84.83 E-value=0.52 Score=39.40 Aligned_cols=50 Identities=10% Similarity=0.062 Sum_probs=39.4
Q ss_pred ccccccccccccCC----C--CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 4 NECRDGGKKGRLAN----T--PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 4 ~~a~~lglf~~L~~----g--~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.|..+..|++.|.+ + +-|..|||+++|+. .+..++..|+.|...|+|+..
T Consensus 4 lt~~q~~il~~l~~~i~~~g~~Ps~~eia~~~g~~---s~~~v~~~l~~L~~~G~l~~~ 59 (202)
T PRK12423 4 LTPKRAAILAFIRERIAQAGQPPSLAEIAQAFGFA---SRSVARKHVQALAEAGLIEVV 59 (202)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCC---ChHHHHHHHHHHHHCCCEEec
Confidence 35555667777753 2 56999999999962 466889999999999999987
No 318
>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication. ; GO: 0006260 DNA replication, 0006276 plasmid maintenance
Probab=84.53 E-value=1.4 Score=35.65 Aligned_cols=43 Identities=9% Similarity=0.180 Sum_probs=38.8
Q ss_pred CCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063 20 LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI 70 (301)
Q Consensus 20 ~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 70 (301)
.|..+||+.+|+ ..+-+.|.++.|...++|.+. ..|.|.++|.
T Consensus 76 ~t~~~ia~~l~i----S~~Tv~r~ik~L~e~~iI~k~----~~G~Y~iNP~ 118 (165)
T PF05732_consen 76 ATQKEIAEKLGI----SKPTVSRAIKELEEKNIIKKI----RNGAYMINPN 118 (165)
T ss_pred eeHHHHHHHhCC----CHHHHHHHHHHHHhCCcEEEc----cCCeEEECcH
Confidence 478999999999 678999999999999999998 4789999994
No 319
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=84.36 E-value=2.2 Score=29.62 Aligned_cols=48 Identities=10% Similarity=0.139 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
.|+...+||+.++. ++.-++.-+..|.++|+|+..+ +..+.|.-|..+
T Consensus 22 ~PVgSk~ia~~l~~----s~aTIRN~M~~Le~lGlve~~p--~~s~GriPT~~a 69 (78)
T PF03444_consen 22 EPVGSKTIAEELGR----SPATIRNEMADLEELGLVESQP--HPSGGRIPTDKA 69 (78)
T ss_pred CCcCHHHHHHHHCC----ChHHHHHHHHHHHHCCCccCCC--CCCCCCCcCHHH
Confidence 69999999999999 7889999999999999998531 124668877766
No 320
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=84.11 E-value=19 Score=30.19 Aligned_cols=119 Identities=16% Similarity=0.249 Sum_probs=70.4
Q ss_pred cCCCCCCcceEEeecCCcee-------------ee--eh-----hHHHhhCCCCCceeEEeCCCCccC------CcccEe
Q 043063 154 GYDGFKGVKRLVDVGGSAGI-------------NF--DL-----PEVVAEAPSIPGVTHIGGDMFKSI------PAADAI 207 (301)
Q Consensus 154 ~~~~~~~~~~vlDvGgG~g~-------------~~--Dl-----p~v~~~a~~~~ri~~~~gd~~~~~------p~~D~v 207 (301)
.++ +++..+||=+|..+|+ ++ +. -+.+..+.++++|--+-+|...|. +..|++
T Consensus 71 ~~p-i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDvi 149 (231)
T COG1889 71 NFP-IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVI 149 (231)
T ss_pred cCC-cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEE
Confidence 344 7788999999988863 22 21 235556666788888888987762 224775
Q ss_pred eHhhhhccCCh-HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHH
Q 043063 208 FMKWVLTTWTD-DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGF 286 (301)
Q Consensus 208 ~~~~vlh~~~d-~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~ 286 (301)
+. +... .++.-+..++..-|++||.+++.=-...-+...+|..- -..|. .-|+
T Consensus 150 y~-----DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~v--------------------f~~ev-~kL~ 203 (231)
T COG1889 150 YQ-----DVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEV--------------------FKDEV-EKLE 203 (231)
T ss_pred EE-----ecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHH--------------------HHHHH-HHHH
Confidence 43 4443 34555677788889999865544333222211122110 12233 3457
Q ss_pred hCCCCceEEEEcc
Q 043063 287 SAGFPHLRLYRVL 299 (301)
Q Consensus 287 ~aGf~~~~~~~~~ 299 (301)
+.||++.++..+.
T Consensus 204 ~~~f~i~e~~~Le 216 (231)
T COG1889 204 EGGFEILEVVDLE 216 (231)
T ss_pred hcCceeeEEeccC
Confidence 7888888887663
No 321
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=83.98 E-value=1.6 Score=36.85 Aligned_cols=81 Identities=22% Similarity=0.390 Sum_probs=51.8
Q ss_pred CCCcceEEeecCCce--------------eee--eh-h----HHHhhCCCCCceeEEeCCCCcc--C----CcccEeeHh
Q 043063 158 FKGVKRLVDVGGSAG--------------INF--DL-P----EVVAEAPSIPGVTHIGGDMFKS--I----PAADAIFMK 210 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g--------------~~~--Dl-p----~v~~~a~~~~ri~~~~gd~~~~--~----p~~D~v~~~ 210 (301)
+.+..+||-+|.++| +++ +. | +.+..|+++.+|--+-.|...| . +..|+++.-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 778899999999884 343 22 2 4556666788999888998876 1 224776542
Q ss_pred hhhccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063 211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
+- .++ ++.-++.++..-|++||.++|.=
T Consensus 151 -Va--Qp~-Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 151 -VA--QPD-QARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp --S--STT-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -CC--ChH-HHHHHHHHHHhhccCCcEEEEEE
Confidence 21 244 45667788888999999877664
No 322
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=83.83 E-value=1.1 Score=30.64 Aligned_cols=42 Identities=12% Similarity=0.046 Sum_probs=37.2
Q ss_pred cccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 11 KKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 11 lf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
|...|+.+..|.++|-+.+|+ +..-+...|..|+..|++.+.
T Consensus 10 IL~~ls~~c~TLeeL~ekTgi----~k~~LlV~LsrL~k~GiI~Rk 51 (72)
T PF05584_consen 10 ILIILSKRCCTLEELEEKTGI----SKNTLLVYLSRLAKRGIIERK 51 (72)
T ss_pred HHHHHHhccCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeee
Confidence 455566678999999999999 899999999999999999986
No 323
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=83.61 E-value=1.3 Score=35.62 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=34.5
Q ss_pred cCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 15 LANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 15 L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
|...|+|++||++++|+ ...++.--++-|...+++.+..
T Consensus 37 ls~~Pmtl~Ei~E~lg~----Sks~vS~~lkkL~~~~lV~~~~ 75 (177)
T COG1510 37 LSRKPLTLDEIAEALGM----SKSNVSMGLKKLQDWNLVKKVF 75 (177)
T ss_pred ecCCCccHHHHHHHHCC----CcchHHHHHHHHHhcchHHhhh
Confidence 44689999999999999 5779999999999999998773
No 324
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=83.35 E-value=0.9 Score=42.98 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=55.8
Q ss_pred cccccccccccCC-CC-CCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCCC
Q 043063 5 ECRDGGKKGRLAN-TP-LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAE 79 (301)
Q Consensus 5 ~a~~lglf~~L~~-g~-~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~~ 79 (301)
++.+..|+..|.. ++ .+.++||+.+|+ ++..+.+.+..|.+.|+++.... ....|.+|+.++..+....
T Consensus 2 ~~~e~~iL~~l~~~~~~~~~~~la~~~g~----~~~~v~~~~~~L~~kg~v~~~~~--~~~~~~LT~eG~~~l~~G~ 72 (492)
T PLN02853 2 AMAEEALLGALSNNEEISDSGQFAASHGL----DHNEVVGVIKSLHGFRYVDAQDI--KRETWVLTEEGKKYAAEGS 72 (492)
T ss_pred chHHHHHHHHHHhcCCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEEE--EEEEEEECHHHHHHHHcCC
Confidence 4567788888885 64 799999999999 89999999999999999986632 2457999999976555543
No 325
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=83.25 E-value=0.38 Score=38.69 Aligned_cols=50 Identities=26% Similarity=0.436 Sum_probs=32.0
Q ss_pred ceEEeecCCce-------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC-----c-ccEeeHhh
Q 043063 162 KRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP-----A-ADAIFMKW 211 (301)
Q Consensus 162 ~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p-----~-~D~v~~~~ 211 (301)
..|+|+-||.| +.+|. |..++.++. .+||+|+.+|+++..+ . .|+|+++=
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 36899988885 45687 666665542 4799999999987522 1 48887653
No 326
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=83.18 E-value=2.3 Score=38.90 Aligned_cols=94 Identities=20% Similarity=0.397 Sum_probs=63.3
Q ss_pred hhhcCCCCCCcceEEeecCCce---------------eeeeh---hHHHhhC-------------CCCCceeEEeCCCCc
Q 043063 151 ILDGYDGFKGVKRLVDVGGSAG---------------INFDL---PEVVAEA-------------PSIPGVTHIGGDMFK 199 (301)
Q Consensus 151 ~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl---p~v~~~a-------------~~~~ri~~~~gd~~~ 199 (301)
+++.+ .......+.|+|+|.| +++++ |.-++.. ++..-++.+.|+|..
T Consensus 184 i~dEl-~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~ 262 (419)
T KOG3924|consen 184 IVDEL-KLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLD 262 (419)
T ss_pred HHHHh-ccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCC
Confidence 33444 2556788999999996 23322 2222211 113568889999886
Q ss_pred c------CCcccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCC
Q 043063 200 S------IPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDD 248 (301)
Q Consensus 200 ~------~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~ 248 (301)
+ ++.+++++..++. ++++...++ +++..-+++|.+++-.++..+..
T Consensus 263 ~~~v~eI~~eatvi~vNN~~--Fdp~L~lr~-~eil~~ck~gtrIiS~~~L~~r~ 314 (419)
T KOG3924|consen 263 PKRVTEIQTEATVIFVNNVA--FDPELKLRS-KEILQKCKDGTRIISSKPLVPRP 314 (419)
T ss_pred HHHHHHHhhcceEEEEeccc--CCHHHHHhh-HHHHhhCCCcceEeccccccccc
Confidence 5 3457999999987 566554444 47888899999999999988743
No 327
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=82.94 E-value=0.7 Score=31.63 Aligned_cols=44 Identities=14% Similarity=0.236 Sum_probs=35.2
Q ss_pred cccccCCCCCCHHHHHHHh---CCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 11 KKGRLANTPLSASQILTRI---LPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 11 lf~~L~~g~~t~~ela~~~---~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
+|.....+..++.++|+.+ +.. ...+++..++.+|.++|++++.
T Consensus 16 ~~~~~~~~~i~l~~ia~~l~~~~~k--~~~RRlYDI~NVLealgli~K~ 62 (71)
T PF02319_consen 16 LFESSPDKSISLNEIADKLISENVK--TQRRRLYDIINVLEALGLIEKQ 62 (71)
T ss_dssp HHHHCCCTEEEHHHHHHHCHHHCCH--HHCHHHHHHHHHHHHCTSEEEE
T ss_pred HHHHCCCCcccHHHHHHHHcccccc--cccchhhHHHHHHHHhCceeec
Confidence 3444455788999999999 761 0368999999999999999996
No 328
>PF13730 HTH_36: Helix-turn-helix domain
Probab=82.84 E-value=1.5 Score=27.93 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=27.3
Q ss_pred CHHHHHHHhCCCCCCCcccHHHHHHHHhcCcce
Q 043063 21 SASQILTRILPSGGGDAENLQRILRLLTNYGVF 53 (301)
Q Consensus 21 t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l 53 (301)
|.+.||+.+|+ ..+-+.+.++.|+..|+|
T Consensus 27 S~~~la~~~g~----s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDLGV----SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHHCc----CHHHHHHHHHHHHHCcCC
Confidence 89999999999 799999999999999986
No 329
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=82.06 E-value=0.77 Score=34.06 Aligned_cols=15 Identities=27% Similarity=0.601 Sum_probs=11.9
Q ss_pred CCcceEEeecCCcee
Q 043063 159 KGVKRLVDVGGSAGI 173 (301)
Q Consensus 159 ~~~~~vlDvGgG~g~ 173 (301)
.....++|||||+|+
T Consensus 57 ~~~~~FVDlGCGNGL 71 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGL 71 (112)
T ss_pred CCCCceEEccCCchH
Confidence 346789999999963
No 330
>PRK06474 hypothetical protein; Provisional
Probab=81.77 E-value=1.2 Score=36.50 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=46.6
Q ss_pred ccccccccccCC-C-CCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcCcceeccccc----cCCCeEecChhc
Q 043063 6 CRDGGKKGRLAN-T-PLSASQILTRI-LPSGGGDAENLQRILRLLTNYGVFSEHREF----GGERKYSLTEIG 71 (301)
Q Consensus 6 a~~lglf~~L~~-g-~~t~~ela~~~-~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~----~~~~~y~~t~~s 71 (301)
..++.|++.|.. + +.|+.+|++.+ ++ +..-+.|.|+.|...|+|...... +....|++++.+
T Consensus 11 p~R~~Il~~L~~~~~~~ta~el~~~l~~i----s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~ 79 (178)
T PRK06474 11 PVRMKICQVLMRNKEGLTPLELVKILKDV----PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEED 79 (178)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEeccce
Confidence 356778888875 3 49999999999 56 566789999999999999976421 112358888755
No 331
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=81.72 E-value=0.89 Score=35.91 Aligned_cols=47 Identities=17% Similarity=0.156 Sum_probs=41.2
Q ss_pred ccccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 6 CRDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 6 a~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
..+..|.+.|.. ++.|..+||+++|+ .+..+.+-++-|...|++...
T Consensus 8 ~~D~~IL~~L~~d~r~~~~eia~~lgl----S~~~v~~Ri~~L~~~GiI~~~ 55 (154)
T COG1522 8 DIDRRILRLLQEDARISNAELAERVGL----SPSTVLRRIKRLEEEGVIKGY 55 (154)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCceeeE
Confidence 456677888875 88999999999999 688999999999999999876
No 332
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=81.06 E-value=0.47 Score=35.13 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=31.9
Q ss_pred cccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 11 KKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 11 lf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
|++.|. .|.++-++||+.+|+ ++.-++++|..|...|++...
T Consensus 18 Il~~L~~~~~l~de~la~~~~l----~~~~vRkiL~~L~~~~lv~~~ 60 (105)
T PF02002_consen 18 ILDALLRKGELTDEDLAKKLGL----KPKEVRKILYKLYEDGLVSYR 60 (105)
T ss_dssp HHHHHHHH--B-HHHHHHTT-S-----HHHHHHHHHHHHHHSS-EEE
T ss_pred HHHHHHHcCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeEEE
Confidence 567776 388999999999999 899999999999999999765
No 333
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=79.96 E-value=2.1 Score=32.36 Aligned_cols=36 Identities=8% Similarity=0.186 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
.+.|++|||+.+.. .++.++.+|+-|...|+|+-.+
T Consensus 18 ~~vtl~elA~~l~c----S~Rn~r~lLkkm~~~gWi~W~p 53 (115)
T PF12793_consen 18 VEVTLDELAELLFC----SRRNARTLLKKMQEEGWITWQP 53 (115)
T ss_pred cceeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeeeC
Confidence 36799999999999 7999999999999999999773
No 334
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=79.59 E-value=2.9 Score=27.65 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=30.3
Q ss_pred CC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 19 PL-SASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 19 ~~-t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
.+ |..+||+..|+ ...-+++-|+.|.+.|++...+
T Consensus 23 ~lps~~~la~~~~v----sr~tvr~al~~L~~~g~i~~~~ 58 (64)
T PF00392_consen 23 RLPSERELAERYGV----SRTTVREALRRLEAEGLIERRP 58 (64)
T ss_dssp BE--HHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEET
T ss_pred EeCCHHHHHHHhcc----CCcHHHHHHHHHHHCCcEEEEC
Confidence 45 89999999999 6889999999999999999873
No 335
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=79.33 E-value=5.5 Score=37.55 Aligned_cols=86 Identities=23% Similarity=0.396 Sum_probs=62.3
Q ss_pred eEEeecCCc----------e----eeeeh-hHHHhhC-----CCCCceeEEeCCCCcc-CCc--ccEeeHhhhhccC-Ch
Q 043063 163 RLVDVGGSA----------G----INFDL-PEVVAEA-----PSIPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTW-TD 218 (301)
Q Consensus 163 ~vlDvGgG~----------g----~~~Dl-p~v~~~a-----~~~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~-~d 218 (301)
+++-+|||. | +..|. +.+++.. ++...+.+...|+..- ++. .|+++....|+.+ .|
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~d 130 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFED 130 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccCC
Confidence 899999999 2 45676 4444443 2356788888888765 665 4999999999974 44
Q ss_pred HHH-------HHHHHHHHHhCCCCCEEEEeccc--cCCC
Q 043063 219 DEC-------KLIMENCYKAIPAGGKLIACEPV--LPDD 248 (301)
Q Consensus 219 ~~~-------~~iL~~~~~aL~pgg~lli~e~~--~~~~ 248 (301)
+++ ...+..+++.|+|||+.+.+-.. .+..
T Consensus 131 e~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~ 169 (482)
T KOG2352|consen 131 EDALLNTAHVSNMLDEVSRVLAPGGKYISVTLVQVVPQG 169 (482)
T ss_pred chhhhhhHHhhHHHhhHHHHhccCCEEEEEEeeeeccCC
Confidence 432 24588999999999998888873 5544
No 336
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=79.12 E-value=10 Score=36.22 Aligned_cols=111 Identities=24% Similarity=0.304 Sum_probs=71.9
Q ss_pred CchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCC--CcceEEeecCCceeeeeh--------------------h
Q 043063 121 PTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFK--GVKRLVDVGGSAGINFDL--------------------P 178 (301)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~--~~~~vlDvGgG~g~~~Dl--------------------p 178 (301)
..|+.+++++--.+.|++|+. .++.+..++-+ ....|.=+|+|.|=+.|- |
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai~-------~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNP 405 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAIL-------KALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNP 405 (649)
T ss_pred hhhhhhhccchHHHHHHHHHH-------HHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCc
Confidence 347778889888888888774 44555443222 256677789999733322 2
Q ss_pred HHHhhC--CC----CCceeEEeCCCCcc-CC-c-ccEeeHhhhhccCChHH-HHHHHHHHHHhCCCCCEEE
Q 043063 179 EVVAEA--PS----IPGVTHIGGDMFKS-IP-A-ADAIFMKWVLTTWTDDE-CKLIMENCYKAIPAGGKLI 239 (301)
Q Consensus 179 ~v~~~a--~~----~~ri~~~~gd~~~~-~p-~-~D~v~~~~vlh~~~d~~-~~~iL~~~~~aL~pgg~ll 239 (301)
..+-.- ++ .+||+++..||.+. -| . +|++ .+..|..|.|.+ ..+-|.-+-..|+|+|.-|
T Consensus 406 NAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~-VSELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 406 NAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADII-VSELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred chhhhhhhhchhhhcCeeEEEeccccccCCchhhccch-HHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 211111 11 37999999999876 34 3 5864 567777777644 5677888888999997554
No 337
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=78.92 E-value=2 Score=35.34 Aligned_cols=63 Identities=16% Similarity=0.056 Sum_probs=47.1
Q ss_pred cccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhhc
Q 043063 9 GGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLVT 76 (301)
Q Consensus 9 lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~~ 76 (301)
..++..|.. ++.|..+||+.+++ +...+.++++-|...|+|.+.... .+. ...+|+.++.+..
T Consensus 48 ~~iL~~L~~~~~itq~eLa~~l~l----~~sTvtr~l~rLE~kGlI~R~~~~-~DrR~~~I~LTekG~~l~~ 114 (185)
T PRK13777 48 HHILWIAYHLKGASISEIAKFGVM----HVSTAFNFSKKLEERGYLTFSKKE-DDKRNTYIELTEKGEELLL 114 (185)
T ss_pred HHHHHHHHhCCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecCCC-CCCCeeEEEECHHHHHHHH
Confidence 344555554 68999999999999 788899999999999999986421 122 3677887776543
No 338
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=78.64 E-value=3.5 Score=36.14 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHhC--CCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063 18 TPLSASQILTRIL--PSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI 70 (301)
Q Consensus 18 g~~t~~ela~~~~--~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 70 (301)
+..+.++||++++ + ...-++.-|+.|..+|+++++ ++|.|..|..
T Consensus 136 ~~~~~~~ia~~l~p~i----s~~ev~~sL~~L~~~glikk~----~~g~y~~t~~ 182 (271)
T TIGR02147 136 FADDPEELAKRCFPKI----SAEQVKESLDLLERLGLIKKN----EDGFYKQTDK 182 (271)
T ss_pred CCCCHHHHHHHhCCCC----CHHHHHHHHHHHHHCCCeeEC----CCCcEEeecc
Confidence 4448899999998 5 477899999999999999998 4788999975
No 339
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=78.58 E-value=1.8 Score=41.19 Aligned_cols=69 Identities=12% Similarity=0.213 Sum_probs=55.0
Q ss_pred cccccccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCCC
Q 043063 5 ECRDGGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAE 79 (301)
Q Consensus 5 ~a~~lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~~ 79 (301)
...+..|+..|.. +..+.++||+.+|+ ++..+.+.+..|.+.|+++.... ....|.+|+.++..+....
T Consensus 5 ~~~e~~iL~~l~~~~~~~~~~~la~~~~~----~~~~v~~~~~~L~~kg~v~~~~~--~~~~~~LT~eG~~~~~~G~ 75 (494)
T PTZ00326 5 ELEENTILSKLESENEIVNSLALAESLNI----DHQKVVGAIKSLESANYITTEMK--KSNTWTLTEEGEDYLKNGS 75 (494)
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEEE--EEEEEEECHHHHHHHHcCC
Confidence 3456677888875 57899999999999 89999999999999999986632 2457999999976555544
No 340
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=78.43 E-value=1.8 Score=36.27 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 17 NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
+.+.|++|+|+++|+ ..--.+|.|.+|++.|+++..
T Consensus 171 ~~~~Taeela~~~gi----SRvTaRRYLeyl~~~~~l~a~ 206 (224)
T COG4565 171 DQELTAEELAQALGI----SRVTARRYLEYLVSNGILEAE 206 (224)
T ss_pred CCccCHHHHHHHhCc----cHHHHHHHHHHHHhcCeeeEE
Confidence 368999999999999 577899999999999999854
No 341
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=78.34 E-value=2.3 Score=39.35 Aligned_cols=75 Identities=13% Similarity=0.192 Sum_probs=51.4
Q ss_pred cceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC---cccEeeHhhhhcc
Q 043063 161 VKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP---AADAIFMKWVLTT 215 (301)
Q Consensus 161 ~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p---~~D~v~~~~vlh~ 215 (301)
..+|||++||+| +..|. |..++.+++ .+.+++..+|....+. ..|+|++-- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 358999999996 34576 666665543 2456788888765332 258887742 1
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063 216 WTDDECKLIMENCYKAIPAGGKLIAC 241 (301)
Q Consensus 216 ~~d~~~~~iL~~~~~aL~pgg~lli~ 241 (301)
.. ...+|..+.+++++||.|.|.
T Consensus 135 -Gs--~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GS--PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CC--cHHHHHHHHHHhcCCCEEEEE
Confidence 21 246788877889999999988
No 342
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=77.23 E-value=1.6 Score=30.27 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=23.8
Q ss_pred cccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 11 KKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 11 lf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
|+..|+. .|.|.++||+++|. ....++..|..+- =.+++
T Consensus 29 LLr~LA~G~PVt~~~LA~a~g~----~~e~v~~~L~~~p---~tEyD 68 (77)
T PF12324_consen 29 LLRLLAKGQPVTVEQLAAALGW----PVEEVRAALAAMP---DTEYD 68 (77)
T ss_dssp HHHHHTTTS-B-HHHHHHHHT------HHHHHHHHHH-T---TSEEE
T ss_pred HHHHHHcCCCcCHHHHHHHHCC----CHHHHHHHHHhCC---CceEc
Confidence 5667776 69999999999999 5555555555543 34555
No 343
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=77.16 E-value=7.7 Score=32.01 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=14.7
Q ss_pred hcCCCCCCcceEEeecCCce
Q 043063 153 DGYDGFKGVKRLVDVGGSAG 172 (301)
Q Consensus 153 ~~~~~~~~~~~vlDvGgG~g 172 (301)
+.|.-+++..+|||+|+..|
T Consensus 62 dKy~~l~p~~~VlD~G~APG 81 (232)
T KOG4589|consen 62 DKYRFLRPEDTVLDCGAAPG 81 (232)
T ss_pred hhccccCCCCEEEEccCCCC
Confidence 34433567799999999885
No 344
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=77.14 E-value=2.2 Score=38.39 Aligned_cols=55 Identities=16% Similarity=0.114 Sum_probs=42.7
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcc-eeccccccCCCeEecChh
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGV-FSEHREFGGERKYSLTEI 70 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~-l~~~~~~~~~~~y~~t~~ 70 (301)
...|.+.|.+ .+.+..+||+++|+ ....+.+.++.|...|+ +... .+..|++.+-
T Consensus 6 ~~~il~~L~~~~~~s~~~LA~~lgv----sr~tV~~~l~~L~~~G~~i~~~----~~~Gy~L~~~ 62 (319)
T PRK11886 6 MLQLLSLLADGDFHSGEQLGEELGI----SRAAIWKHIQTLEEWGLDIFSV----KGKGYRLAEP 62 (319)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCceEEe----cCCeEEecCc
Confidence 3456677776 46899999999999 78899999999999999 5443 2346887554
No 345
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=77.05 E-value=2.2 Score=40.20 Aligned_cols=54 Identities=22% Similarity=0.228 Sum_probs=40.1
Q ss_pred ccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063 10 GKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI 70 (301)
Q Consensus 10 glf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 70 (301)
-|...|.+||.|+.||++.+|+ ....+.+.|..| .|+|...+++ ..-+|++...
T Consensus 4 ~~~~~L~~g~~~~~eL~~~l~~----sq~~~s~~L~~L--~~~V~~~~~g-r~~~Y~l~~~ 57 (442)
T PRK09775 4 LLTTLLLQGPLSAAELAARLGV----SQATLSRLLAAL--GDQVVRFGKA-RATRYALLRP 57 (442)
T ss_pred HHHHHHhcCCCCHHHHHHHhCC----CHHHHHHHHHHh--hcceeEeccC-ceEEEEeccc
Confidence 3556778899999999999999 577999999999 8888766421 1124655543
No 346
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=76.82 E-value=3.4 Score=35.31 Aligned_cols=43 Identities=26% Similarity=0.200 Sum_probs=38.2
Q ss_pred ccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 10 GKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 10 glf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.|++.|.. |.++..+||+++|+ .+..+++=++.|.+.|+++..
T Consensus 187 ~IL~~L~~~egrlse~eLAerlGV----SRs~ireAlrkLE~aGvIe~r 231 (251)
T TIGR02787 187 HIFEELDGNEGLLVASKIADRVGI----TRSVIVNALRKLESAGVIESR 231 (251)
T ss_pred HHHHHhccccccccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 46777875 78999999999999 688999999999999999987
No 347
>PF13518 HTH_28: Helix-turn-helix domain
Probab=76.42 E-value=1.8 Score=27.10 Aligned_cols=37 Identities=11% Similarity=0.051 Sum_probs=29.6
Q ss_pred cccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcc
Q 043063 11 KKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGV 52 (301)
Q Consensus 11 lf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~ 52 (301)
+.....+|- |+.++|+.+|+ ++..+.+|++.....|+
T Consensus 5 iv~~~~~g~-s~~~~a~~~gi----s~~tv~~w~~~y~~~G~ 41 (52)
T PF13518_consen 5 IVELYLEGE-SVREIAREFGI----SRSTVYRWIKRYREGGI 41 (52)
T ss_pred HHHHHHcCC-CHHHHHHHHCC----CHhHHHHHHHHHHhcCH
Confidence 334444455 99999999999 78999999999888774
No 348
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=76.20 E-value=1 Score=29.94 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=33.5
Q ss_pred cccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 11 KKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 11 lf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
|++.|- .|+.|+.+|.+.+++ +++.++.-|-.|...+++...
T Consensus 18 V~~~Ll~~G~ltl~~i~~~t~l----~~~~Vk~~L~~LiQh~~v~y~ 60 (62)
T PF08221_consen 18 VGEVLLSRGRLTLREIVRRTGL----SPKQVKKALVVLIQHNLVQYF 60 (62)
T ss_dssp HHHHHHHC-SEEHHHHHHHHT------HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCCcCHHHHHHHhCC----CHHHHHHHHHHHHHcCCeeee
Confidence 445554 589999999999999 799999999999999998764
No 349
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=76.11 E-value=1.8 Score=32.24 Aligned_cols=64 Identities=20% Similarity=0.262 Sum_probs=46.0
Q ss_pred ccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhhcC
Q 043063 10 GKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLVTD 77 (301)
Q Consensus 10 glf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~~~ 77 (301)
.++..|.. ++.+..+||+.+++ ++..+.++++.|...|++.+..... ..-.+.+|+.++.+...
T Consensus 26 ~~L~~l~~~~~~~~~~la~~l~i----~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~~~ 92 (126)
T COG1846 26 QVLLALYEAGGITVKELAERLGL----DRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELLEQ 92 (126)
T ss_pred HHHHHHHHhCCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCccccceeeEEECccHHHHHHH
Confidence 34444544 34444999999999 8999999999999999999885320 01257888888765543
No 350
>PF05331 DUF742: Protein of unknown function (DUF742); InterPro: IPR007995 This family consists of several uncharacterised Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.
Probab=76.04 E-value=3.3 Score=31.20 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 17 NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
..|.|++|||+.+++ +..-++-++--|...|++...
T Consensus 53 ~~~~SVAEiAA~L~l----PlgVvrVLvsDL~~~G~v~v~ 88 (114)
T PF05331_consen 53 RRPLSVAEIAARLGL----PLGVVRVLVSDLADAGLVRVR 88 (114)
T ss_pred CCCccHHHHHHhhCC----CchhhhhhHHHHHhCCCEEEe
Confidence 359999999999999 678889999999999999876
No 351
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=75.99 E-value=2.2 Score=36.97 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=38.6
Q ss_pred ccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 10 GKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 10 glf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
.|.+.|.+ +..++.|||+.+|+ .+.-++|-|+.|.+.|++.+..
T Consensus 9 ~Il~~l~~~~~~~~~ela~~l~v----S~~TirRdL~~Le~~g~i~r~~ 53 (251)
T PRK13509 9 ILLELLAQLGFVTVEKVIERLGI----SPATARRDINKLDESGKLKKVR 53 (251)
T ss_pred HHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEec
Confidence 46677765 78999999999999 6888999999999999999883
No 352
>PF02295 z-alpha: Adenosine deaminase z-alpha domain; InterPro: IPR000607 Double-stranded RNA-specific adenosine deaminase (3.5 from EC) converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. DRADA has been found to modify adenosines in AU-rich regions more frequently, probably due to the relative ease of melting A/U base pairs compared to G/C base pairs. The protein functions to modify viral RNA genomes, and may be responsible for hypermutation of certain negative-stranded viruses. DRADA edits the mRNAs for the glutamate receptor subunits by site-selective adenosine deamination. The DRADA repeat is also found in viral E3 proteins, which contain a double-stranded RNA-binding domain.; GO: 0003723 RNA binding, 0003726 double-stranded RNA adenosine deaminase activity; PDB: 1OYI_A 3EYI_A 2L4M_A 2HEO_D 1J75_A 1SFU_B 3IRR_B 2ACJ_C 3F22_B 2L54_A ....
Probab=75.59 E-value=0.32 Score=32.77 Aligned_cols=59 Identities=24% Similarity=0.212 Sum_probs=40.3
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE 69 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 69 (301)
.+-.|.+.|.. |+.++-.+|...|++. ...-+.+.|+.|...|.|.+.. +.+-.|+++.
T Consensus 5 ~ee~Il~~L~~~g~~~a~~ia~~~~L~~--~kk~VN~~LY~L~k~g~v~k~~--~~PP~W~l~~ 64 (66)
T PF02295_consen 5 LEEKILDFLKELGGSTATAIAKALGLSV--PKKEVNRVLYRLEKQGKVCKEG--GTPPKWSLTE 64 (66)
T ss_dssp HHHHHHHHHHHHTSSEEEHHHHHHHHTS---HHHHHHHHHHHHHTTSEEEEC--SSSTEEEE-H
T ss_pred HHHHHHHHHHhcCCccHHHHHHHhCcch--hHHHHHHHHHHHHHCCCEeeCC--CCCCceEecc
Confidence 34456777764 5666666666666620 3789999999999999998762 2355777764
No 353
>PRK10736 hypothetical protein; Provisional
Probab=75.18 E-value=4.3 Score=37.27 Aligned_cols=51 Identities=10% Similarity=-0.042 Sum_probs=43.2
Q ss_pred cccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEec
Q 043063 9 GGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSL 67 (301)
Q Consensus 9 lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~ 67 (301)
..|++.|...|.++++|++++|+ +...+...|-.|.-.|++.+. .++.|+.
T Consensus 311 ~~v~~~l~~~~~~iD~L~~~~~l----~~~~v~~~L~~LEl~G~v~~~----~g~~~~~ 361 (374)
T PRK10736 311 PELLANVGDEVTPVDVVAERAGQ----PVPEVVTQLLELELAGWIAAV----PGGYVRL 361 (374)
T ss_pred HHHHHhcCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEEc----CCcEEEE
Confidence 45777777678999999999999 788999999999999999998 3555655
No 354
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=74.86 E-value=25 Score=30.13 Aligned_cols=134 Identities=18% Similarity=0.210 Sum_probs=71.8
Q ss_pred hhhcCCCCCCcceEEeecCCce--------------eeeeh--hHHHhhCCCCCceeEEeC-CCCccCC----c-ccEee
Q 043063 151 ILDGYDGFKGVKRLVDVGGSAG--------------INFDL--PEVVAEAPSIPGVTHIGG-DMFKSIP----A-ADAIF 208 (301)
Q Consensus 151 ~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl--p~v~~~a~~~~ri~~~~g-d~~~~~p----~-~D~v~ 208 (301)
.++.|+-......+||||..+| ..+|. -+.....+..+||..++. |+..-.| + .|+++
T Consensus 70 ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v 149 (245)
T COG1189 70 ALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIV 149 (245)
T ss_pred HHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEE
Confidence 3444431235689999999995 23344 233334445677777664 4432222 1 24433
Q ss_pred HhhhhccCChHHHHHHHHHHHHhCCCCCEE-EEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHh
Q 043063 209 MKWVLTTWTDDECKLIMENCYKAIPAGGKL-IACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFS 287 (301)
Q Consensus 209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l-li~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~ 287 (301)
+- .+--....+|-.+...++|++.+ +++-+-....++. ...-....| ......-.+++.+++.+
T Consensus 150 ~D-----vSFISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~--v~kkGvv~d--------~~~~~~v~~~i~~~~~~ 214 (245)
T COG1189 150 ID-----VSFISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQ--VGKKGVVRD--------PKLHAEVLSKIENFAKE 214 (245)
T ss_pred EE-----eehhhHHHHHHHHHHhcCCCceEEEEecchhhhhhhh--cCcCceecC--------cchHHHHHHHHHHHHhh
Confidence 32 22222357888889999998754 4444433322110 000000111 11223357788899999
Q ss_pred CCCCceEEEEcc
Q 043063 288 AGFPHLRLYRVL 299 (301)
Q Consensus 288 aGf~~~~~~~~~ 299 (301)
.||++..+.+.+
T Consensus 215 ~g~~~~gl~~Sp 226 (245)
T COG1189 215 LGFQVKGLIKSP 226 (245)
T ss_pred cCcEEeeeEccC
Confidence 999998887654
No 355
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=74.30 E-value=4.7 Score=33.40 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=32.2
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
+.|-.+||..+|+ .+..+.|+|+.|...|++...
T Consensus 168 ~~t~~~lA~~lG~----tr~tvsR~l~~l~~~gii~~~ 201 (211)
T PRK11753 168 KITRQEIGRIVGC----SREMVGRVLKMLEDQGLISAH 201 (211)
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEec
Confidence 7889999999999 799999999999999999977
No 356
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=74.13 E-value=1.1 Score=27.15 Aligned_cols=32 Identities=13% Similarity=0.039 Sum_probs=22.4
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHH
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQR 42 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~ 42 (301)
++..|++.|.. +..|..+||+.+|+ .+..+.+
T Consensus 4 ~D~~Il~~Lq~d~r~s~~~la~~lgl----S~~~v~~ 36 (42)
T PF13404_consen 4 LDRKILRLLQEDGRRSYAELAEELGL----SESTVRR 36 (42)
T ss_dssp HHHHHHHHHHH-TTS-HHHHHHHHTS-----HHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHCc----CHHHHHH
Confidence 45567777864 88999999999999 4544443
No 357
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=74.03 E-value=1.5 Score=32.12 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=35.0
Q ss_pred CCceeEEeCCCCccC---C-c-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063 187 IPGVTHIGGDMFKSI---P-A-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 187 ~~ri~~~~gd~~~~~---p-~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
.++++++.+|..+.+ + . .|++++=. +...+.+..-++.+.+.|+|||.+++.|
T Consensus 48 ~~~~~~~~g~s~~~l~~~~~~~~dli~iDg---~H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 48 SDRVEFIQGDSPDFLPSLPDGPIDLIFIDG---DHSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -BTEEEEES-THHHHHHHHH--EEEEEEES------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCeEEEEEcCcHHHHHHcCCCCEEEEEECC---CCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 478999999986543 3 2 37766543 2234556788999999999999888765
No 358
>PF09904 HTH_43: Winged helix-turn helix; InterPro: IPR017162 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3KE2_B.
Probab=74.02 E-value=1.7 Score=30.97 Aligned_cols=50 Identities=10% Similarity=0.175 Sum_probs=31.2
Q ss_pred CCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc---cCCCeEecCh
Q 043063 16 ANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF---GGERKYSLTE 69 (301)
Q Consensus 16 ~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~---~~~~~y~~t~ 69 (301)
..+..++..|.+.||+ +.+-++..|.+|..+|+-.+-..+ ...|.|+++.
T Consensus 18 ~~~~~nvp~L~~~TGm----PrRT~Qd~i~aL~~~~I~~~Fvq~G~R~~~GyY~i~~ 70 (90)
T PF09904_consen 18 DSGERNVPALMEATGM----PRRTIQDTIKALPELGIECEFVQDGERNNAGYYRISD 70 (90)
T ss_dssp HHS-B-HHHHHHHH-------HHHHHHHHHGGGGGT-EEEEE--TTS-S--EEEEEE
T ss_pred hcCCccHHHHHHHhCC----CHhHHHHHHHHhhcCCeEEEEEecCccCCCCcEEeee
Confidence 3455699999999999 788999999999999998763211 1345677654
No 359
>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation.
Probab=73.72 E-value=4.2 Score=30.93 Aligned_cols=46 Identities=17% Similarity=0.269 Sum_probs=40.2
Q ss_pred HHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCC
Q 043063 24 QILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDA 78 (301)
Q Consensus 24 ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~ 78 (301)
+||+.+++ +-.-|-.+++++.-+|+++.. +|-..+|+.++.++...
T Consensus 2 ~La~~l~~----eiDdL~p~~eAaelLgf~~~~-----~Gdi~LT~~G~~f~~a~ 47 (120)
T PF09821_consen 2 QLADELHL----EIDDLLPIVEAAELLGFAEVE-----EGDIRLTPLGRRFAEAD 47 (120)
T ss_pred chHHHhCC----cHHHHHHHHHHHHHcCCeeec-----CCcEEeccchHHHHHCC
Confidence 47888888 788899999999999999998 78899999999887654
No 360
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=73.18 E-value=4.2 Score=24.27 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=22.6
Q ss_pred ccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcC
Q 043063 14 RLANTPLSASQILTRILPSGGGDAENLQRILRLLTNY 50 (301)
Q Consensus 14 ~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~ 50 (301)
.+. .+.|+++||..+|+ ++..+.|.++....+
T Consensus 4 ~~~-~~~~l~~iA~~~g~----S~~~f~r~Fk~~~g~ 35 (42)
T PF00165_consen 4 NLQ-QKLTLEDIAEQAGF----SPSYFSRLFKKETGM 35 (42)
T ss_dssp TT--SS--HHHHHHHHTS-----HHHHHHHHHHHTSS
T ss_pred ccc-CCCCHHHHHHHHCC----CHHHHHHHHHHHHCc
Confidence 344 46899999999999 798999988876543
No 361
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=73.18 E-value=5.1 Score=33.90 Aligned_cols=43 Identities=12% Similarity=0.213 Sum_probs=37.3
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI 70 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 70 (301)
|.|.++||..+|+ .+..+.|.|+.|...|++... .+.+.+...
T Consensus 184 ~lt~~~iA~~lG~----sr~tvsR~l~~l~~~g~I~~~-----~~~i~i~d~ 226 (235)
T PRK11161 184 TMTRGDIGNYLGL----TVETISRLLGRFQKSGMLAVK-----GKYITIENN 226 (235)
T ss_pred cccHHHHHHHhCC----cHHHHHHHHHHHHHCCCEEec-----CCEEEEcCH
Confidence 6899999999999 788999999999999999988 556666543
No 362
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=73.16 E-value=5.4 Score=32.47 Aligned_cols=34 Identities=26% Similarity=0.233 Sum_probs=32.3
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
|.|-++||..+|+ .+..+.|.|+.|...|+++..
T Consensus 143 ~~t~~~iA~~lG~----tretvsR~l~~l~~~g~I~~~ 176 (193)
T TIGR03697 143 RLSHQAIAEAIGS----TRVTITRLLGDLRKKKLISIH 176 (193)
T ss_pred CCCHHHHHHHhCC----cHHHHHHHHHHHHHCCCEEec
Confidence 6899999999999 799999999999999999987
No 363
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=73.04 E-value=3.2 Score=32.03 Aligned_cols=49 Identities=8% Similarity=0.083 Sum_probs=38.3
Q ss_pred ccccccccccc-CCCCCCHHHHHHHh----CCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 5 ECRDGGKKGRL-ANTPLSASQILTRI----LPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 5 ~a~~lglf~~L-~~g~~t~~ela~~~----~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
+..|+.|.+.| ..++.|+.+|.+.+ ++ ...-+..+|+-|...|+|.+..
T Consensus 3 t~~E~~VM~vlW~~~~~t~~eI~~~l~~~~~~----~~tTv~T~L~rL~~KG~v~~~k 56 (130)
T TIGR02698 3 SDAEWEVMRVVWTLGETTSRDIIRILAEKKDW----SDSTIKTLLGRLVDKGCLTTEK 56 (130)
T ss_pred CHHHHHHHHHHHcCCCCCHHHHHHHHhhccCC----cHHHHHHHHHHHHHCCceeeec
Confidence 34566677777 34889999977776 45 6778899999999999999763
No 364
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=72.90 E-value=1.5 Score=26.88 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=18.9
Q ss_pred cccccCCCCCCHHHHHHHhCCCCCCCcccHHHHH
Q 043063 11 KKGRLANTPLSASQILTRILPSGGGDAENLQRIL 44 (301)
Q Consensus 11 lf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL 44 (301)
+.+++.+| .|+.+||+.+|+ ...-+.|.|
T Consensus 14 i~~l~~~G-~si~~IA~~~gv----sr~TvyR~l 42 (45)
T PF02796_consen 14 IKELYAEG-MSIAEIAKQFGV----SRSTVYRYL 42 (45)
T ss_dssp HHHHHHTT---HHHHHHHTTS-----HHHHHHHH
T ss_pred HHHHHHCC-CCHHHHHHHHCc----CHHHHHHHH
Confidence 44555666 999999999999 455555554
No 365
>PF09681 Phage_rep_org_N: N-terminal phage replisome organiser (Phage_rep_org_N); InterPro: IPR010056 This entry is represented by the N-terminal domain of Bacteriophage A500, Gp45. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The proteins in this entry contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The low-complexity region is adjacent to this N-terminal domain.
Probab=72.44 E-value=7.4 Score=29.65 Aligned_cols=48 Identities=10% Similarity=0.182 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchh
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKS 73 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~ 73 (301)
-|-|.++||..++- +...++.-|..+..+|+++.. +++.|.++...+.
T Consensus 52 ipy~~e~LA~~~~~----~~~~V~~AL~~f~k~glIe~~----ed~~i~i~~~~~~ 99 (121)
T PF09681_consen 52 IPYTAEMLALEFDR----PVDTVRLALAVFQKLGLIEID----EDGVIYIPNWEKH 99 (121)
T ss_pred CCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe----cCCeEEeecHHHH
Confidence 58999999999998 789999999999999999998 5788888765443
No 366
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=72.22 E-value=5.6 Score=26.33 Aligned_cols=46 Identities=28% Similarity=0.346 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHhCCCCCCC-cccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063 18 TPLSASQILTRILPSGGGD-AENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK 72 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~-~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~ 72 (301)
..++.+++.++.|. + .......|..+...|+++.+ ++++++|+.+.
T Consensus 19 ~Gi~~~~~~~~~g~----~~~~~~~~~l~~l~~~Gll~~~-----~~~l~lT~~G~ 65 (66)
T PF06969_consen 19 EGIDLSEFEQRFGI----DFAEEFQKELEELQEDGLLEID-----GGRLRLTEKGR 65 (66)
T ss_dssp SEEEHHHHHHHTT------THHH-HHHHHHHHHTTSEEE------SSEEEE-TTTG
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHHCCCEEEe-----CCEEEECcccC
Confidence 45688999999997 4 34557789999999999998 78999998764
No 367
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=71.94 E-value=5.6 Score=32.45 Aligned_cols=41 Identities=12% Similarity=0.277 Sum_probs=30.1
Q ss_pred cEeeHhhhhccCCh----------HHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 205 DAIFMKWVLTTWTD----------DECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 205 D~v~~~~vlh~~~d----------~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
|+|+++++||+++. +...+++.++.++|+|...++ .-...|
T Consensus 52 DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allI-W~tt~P 102 (183)
T cd01842 52 DLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIV-WNTAMP 102 (183)
T ss_pred eEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEE-EecCCC
Confidence 99999999999875 345677778888888875554 444444
No 368
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=71.28 E-value=5.7 Score=27.78 Aligned_cols=59 Identities=14% Similarity=0.013 Sum_probs=45.5
Q ss_pred ccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchh
Q 043063 8 DGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKS 73 (301)
Q Consensus 8 ~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~ 73 (301)
.+-++..+...+.|-++||+++|+ ...++-..++.|...|+=-+.. .+..|++......
T Consensus 8 ~~~ll~~~~~~~~SGe~La~~Lgi----SRtaVwK~Iq~Lr~~G~~I~s~---~~kGY~L~~~~~l 66 (79)
T COG1654 8 LLLLLLLLTGNFVSGEKLAEELGI----SRTAVWKHIQQLREEGVDIESV---RGKGYLLPQLPDL 66 (79)
T ss_pred HHHHHHHcCCCcccHHHHHHHHCc----cHHHHHHHHHHHHHhCCceEec---CCCceeccCcccc
Confidence 344566666679999999999999 6889999999999999866653 2347888765443
No 369
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=71.20 E-value=8.3 Score=28.13 Aligned_cols=67 Identities=22% Similarity=0.201 Sum_probs=45.8
Q ss_pred ccccccCCCCCCHHHHHHHhCCCC----CCCcccHHHHHHHHhcCcceeccc---ccc-CCCeEecChhchhhhc
Q 043063 10 GKKGRLANTPLSASQILTRILPSG----GGDAENLQRILRLLTNYGVFSEHR---EFG-GERKYSLTEIGKSLVT 76 (301)
Q Consensus 10 glf~~L~~g~~t~~ela~~~~~~~----~~~~~~l~~lL~~L~~~g~l~~~~---~~~-~~~~y~~t~~s~~l~~ 76 (301)
=|+-.|..+|.+--+|++.+.-.. +.++..+...|+.|...|+++... +.+ ..-.|++|+.++.+..
T Consensus 8 ~iL~~L~~~~~~GYei~~~l~~~~~~~~~i~~gtlY~~L~rLe~~GlI~~~~~~~~~~~~rk~y~iT~~Gr~~l~ 82 (100)
T TIGR03433 8 LILKTLSLGPLHGYGIAQRIQQISEDVLQVEEGSLYPALHRLERRGWIAAEWGESENNRRAKFYRLTAAGRKQLA 82 (100)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHcCCccccCCCcHHHHHHHHHHCCCeEEEeeecCCCCCceEEEECHHHHHHHH
Confidence 345566678999888888752110 116778999999999999999731 111 1235999999976543
No 370
>PF13814 Replic_Relax: Replication-relaxation
Probab=70.83 E-value=6.4 Score=32.17 Aligned_cols=62 Identities=27% Similarity=0.364 Sum_probs=44.9
Q ss_pred ccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc------cCCCeEecChhchhhhc
Q 043063 14 RLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF------GGERKYSLTEIGKSLVT 76 (301)
Q Consensus 14 ~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~------~~~~~y~~t~~s~~l~~ 76 (301)
.|.. +.+|.++|++..+.+.. .++.+++.|+-|...|+|...... ..+-.|.+|+.+..++.
T Consensus 3 ~L~~~r~lt~~Qi~~l~~~~~~-~~~~~~rrL~~L~~~glv~~~~~~~~~~~g~~~~vy~Lt~~G~~~l~ 71 (191)
T PF13814_consen 3 LLARHRFLTTDQIARLLFPSSK-SERTARRRLKRLRELGLVDRFRRRVGARGGSQPYVYYLTPAGARLLA 71 (191)
T ss_pred hHHHhcCcCHHHHHHHHcCCCc-chHHHHHHHHHHhhCCcEEeecccccccCCCcceEEEECHHHHHHHH
Confidence 3444 67899999999998311 123799999999999999987531 13347999999865444
No 371
>PF11994 DUF3489: Protein of unknown function (DUF3489); InterPro: IPR021880 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 84 to 211 amino acids in length. This protein has a single completely conserved residue W that may be functionally important.
Probab=70.82 E-value=8.5 Score=26.30 Aligned_cols=40 Identities=13% Similarity=0.027 Sum_probs=28.1
Q ss_pred cccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHH--hcCccee
Q 043063 11 KKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLL--TNYGVFS 54 (301)
Q Consensus 11 lf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L--~~~g~l~ 54 (301)
|++.|.. +..|+++|++++|. .+.-++-.|--+ -.+|+--
T Consensus 15 li~mL~rp~GATi~ei~~atGW----q~HTvRgalsg~~kKklGl~i 57 (72)
T PF11994_consen 15 LIAMLRRPEGATIAEICEATGW----QPHTVRGALSGLLKKKLGLTI 57 (72)
T ss_pred HHHHHcCCCCCCHHHHHHhhCC----chhhHHHHHHHHHHHhcCcEE
Confidence 5666764 67899999999999 676666666555 4445443
No 372
>PF09929 DUF2161: Uncharacterized conserved protein (DUF2161); InterPro: IPR018679 This family of various hypothetical prokaryotic proteins has no known function.
Probab=70.75 E-value=2.9 Score=31.42 Aligned_cols=51 Identities=25% Similarity=0.349 Sum_probs=38.3
Q ss_pred cccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063 11 KKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK 72 (301)
Q Consensus 11 lf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~ 72 (301)
+-.+|. .||.+..+|++.++. +.. .++|+. ---|+|++. +.|.|.+|+.++
T Consensus 64 ~A~~L~~~Gp~~~~~l~~~~~~-----~~A-~~IL~~-N~YGWFeRv----~rGvY~LT~~G~ 115 (118)
T PF09929_consen 64 CAAALAEHGPSRPADLRKATGV-----PKA-TSILRD-NHYGWFERV----ERGVYALTPAGR 115 (118)
T ss_pred HHHHHHHcCCCCHHHHHHhcCC-----ChH-HHHHHh-Ccccceeee----ccceEecCcchh
Confidence 334566 499999999999987 433 344432 467999999 589999999875
No 373
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=70.61 E-value=2.7 Score=36.44 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=39.0
Q ss_pred cccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 9 GGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 9 lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
.-|.+.|.+ +..++.|||+.+++ .+.-++|-|..|...|++.+..
T Consensus 8 ~~Il~~l~~~~~~~~~ela~~l~v----S~~TiRRdL~~Le~~g~l~r~~ 53 (252)
T PRK10906 8 DAIIELVKQQGYVSTEELVEHFSV----SPQTIRRDLNDLAEQNKILRHH 53 (252)
T ss_pred HHHHHHHHHcCCEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEec
Confidence 346677765 78999999999999 6889999999999999999983
No 374
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=70.37 E-value=6.7 Score=32.22 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=36.0
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE 69 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 69 (301)
+.|-++||..+|+ .+..+.|.|+.|...|++... .+...+..
T Consensus 149 ~~t~~~iA~~lG~----tretvsR~l~~l~~~g~I~~~-----~~~i~I~d 190 (202)
T PRK13918 149 YATHDELAAAVGS----VRETVTKVIGELSREGYIRSG-----YGKIQLLD 190 (202)
T ss_pred cCCHHHHHHHhCc----cHHHHHHHHHHHHHCCCEEcC-----CCEEEEEC
Confidence 6799999999999 788999999999999999966 45555543
No 375
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=70.13 E-value=4.3 Score=34.92 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=38.2
Q ss_pred cccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 9 GGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 9 lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
..|.+.|.+ +..++++||+.+++ .+.-++|-|..|...|.+.+.
T Consensus 7 ~~Il~~l~~~~~~~~~eLa~~l~V----S~~TiRRdL~~L~~~~~l~r~ 51 (240)
T PRK10411 7 QAIVDLLLNHTSLTTEALAEQLNV----SKETIRRDLNELQTQGKILRN 51 (240)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 346677764 78999999999999 688999999999999999887
No 376
>PF00376 MerR: MerR family regulatory protein; InterPro: IPR000551 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these is the MerR subfamily. MerR, which is found in many bacterial species mediates the mercuric-dependent induction of the mercury resistance operon. In the absence of mercury merR represses transcription by binding tightly, as a dimer, to the 'mer' operator region; when mercury is present the dimeric complex binds a single ion and becomes a potent transcriptional activator, while remaining bound to the mer site. Members of the family include the mercuric resistance operon regulatory protein merR; Bacillus subtilis bltR and bmrR; Bacillus glnR; Streptomyces coelicolor hspR; Bradyrhizobium japonicum nolA; Escherichia coli superoxide response regulator soxR; and Streptomyces lividans transcriptional activator tipA [, , , , , ]. Other members include hypothetical proteins from E. coli, B. subtilis and Haemophilus influenzae. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3HH0_A 2DG6_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q07_A 1Q06_A 1Q05_B ....
Probab=70.02 E-value=7 Score=23.02 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=20.3
Q ss_pred CHHHHHHHhCCCCCCCcccHHHHHHHHhcCccee
Q 043063 21 SASQILTRILPSGGGDAENLQRILRLLTNYGVFS 54 (301)
Q Consensus 21 t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~ 54 (301)
|..|+|+.+|+| .+.||.....|+|.
T Consensus 1 ti~e~A~~~gvs--------~~tlR~ye~~Gll~ 26 (38)
T PF00376_consen 1 TIGEVAKLLGVS--------PRTLRYYEREGLLP 26 (38)
T ss_dssp EHHHHHHHHTS---------HHHHHHHHHTTSS-
T ss_pred CHHHHHHHHCCC--------HHHHHHHHHCCCCC
Confidence 468999999994 56777888899994
No 377
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=69.20 E-value=1.6 Score=36.42 Aligned_cols=75 Identities=20% Similarity=0.324 Sum_probs=45.7
Q ss_pred CCCcceEEeecCCce---------------eeeeh-hHHHhhCC-------CCCceeEEeCCCCccCCc--ccEeeHhhh
Q 043063 158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAP-------SIPGVTHIGGDMFKSIPA--ADAIFMKWV 212 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~-------~~~ri~~~~gd~~~~~p~--~D~v~~~~v 212 (301)
..+..+|+|.-||.| +..|+ |..++-.+ -.++|....+|..+-.+. +|-|+|.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~-- 176 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMN-- 176 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE---
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEEC--
Confidence 456789999999995 34577 66554432 247899999998765443 5866654
Q ss_pred hccCChHHHHHHHHHHHHhCCCCCEE
Q 043063 213 LTTWTDDECKLIMENCYKAIPAGGKL 238 (301)
Q Consensus 213 lh~~~d~~~~~iL~~~~~aL~pgg~l 238 (301)
+|.. +..+|..+.+.+++||.+
T Consensus 177 ---lp~~-~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 177 ---LPES-SLEFLDAALSLLKEGGII 198 (200)
T ss_dssp ----TSS-GGGGHHHHHHHEEEEEEE
T ss_pred ---ChHH-HHHHHHHHHHHhcCCcEE
Confidence 3432 357888888888888765
No 378
>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]
Probab=69.09 E-value=2.7 Score=36.54 Aligned_cols=46 Identities=13% Similarity=0.240 Sum_probs=39.9
Q ss_pred ccccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 8 DGGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 8 ~lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
|..+.++|.+ |..+-+||.+++|+ ++.-+.|.|+-|...|++++.+
T Consensus 197 e~~il~~i~~~GGri~Q~eL~r~lgl----sktTvsR~L~~LEk~GlIe~~K 244 (258)
T COG2512 197 EKEILDLIRERGGRITQAELRRALGL----SKTTVSRILRRLEKRGLIEKEK 244 (258)
T ss_pred HHHHHHHHHHhCCEEeHHHHHHhhCC----ChHHHHHHHHHHHhCCceEEEE
Confidence 4566777763 67899999999999 6889999999999999999886
No 379
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=69.09 E-value=10 Score=30.92 Aligned_cols=90 Identities=14% Similarity=0.174 Sum_probs=49.9
Q ss_pred HhhhcCCCCCCcceEEeecCCce-------------e-----------eeeh-hHHHhhCCC-------CCceeEEeCCC
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG-------------I-----------NFDL-PEVVAEAPS-------IPGVTHIGGDM 197 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~-----------~~Dl-p~v~~~a~~-------~~ri~~~~gd~ 197 (301)
.++.... |++...|+|-=||+| . +.|. +.+++.+++ ...|.+...|+
T Consensus 19 ~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179)
T PF01170_consen 19 ALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA 97 (179)
T ss_dssp HHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred HHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence 3444443 777789999988886 3 4566 566655543 36789999998
Q ss_pred Ccc-CCc--ccEeeHhhhhcc-CCh-HH----HHHHHHHHHHhCCCCCEEEE
Q 043063 198 FKS-IPA--ADAIFMKWVLTT-WTD-DE----CKLIMENCYKAIPAGGKLIA 240 (301)
Q Consensus 198 ~~~-~p~--~D~v~~~~vlh~-~~d-~~----~~~iL~~~~~aL~pgg~lli 240 (301)
.+. .+. .|+|++.--... ... .+ -.++++.+.+.|++...+++
T Consensus 98 ~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 98 RELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp GGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred hhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 864 333 388887654432 222 11 23567888888888433333
No 380
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=69.00 E-value=6.3 Score=35.10 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=45.6
Q ss_pred ceeEEeCCCCcc-C---------CcccEeeHhhhhccC---ChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063 189 GVTHIGGDMFKS-I---------PAADAIFMKWVLTTW---TDDECKLIMENCYKAIPAGGKLIACEPV 244 (301)
Q Consensus 189 ri~~~~gd~~~~-~---------p~~D~v~~~~vlh~~---~d~~~~~iL~~~~~aL~pgg~lli~e~~ 244 (301)
.++|...|+.+. . |..++|.+-++++.+ +-.+..++|.++-+.++||..|+|.|.-
T Consensus 176 ~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 176 NVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred eeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 578999999864 1 124899999998863 4566889999999999999999999974
No 381
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=68.15 E-value=3.7 Score=35.99 Aligned_cols=44 Identities=11% Similarity=0.094 Sum_probs=38.9
Q ss_pred cccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 9 GGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 9 lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
..|.+.|.+ +..|+.|||+.+++ .+.=++|=|..|...|++.+.
T Consensus 20 ~~Il~~L~~~~~vtv~eLa~~l~V----S~~TIRRDL~~Le~~G~l~r~ 64 (269)
T PRK09802 20 EQIIQRLRQQGSVQVNDLSALYGV----STVTIRNDLAFLEKQGIAVRA 64 (269)
T ss_pred HHHHHHHHHcCCEeHHHHHHHHCC----CHHHHHHHHHHHHhCCCeEEE
Confidence 346777765 78999999999999 688999999999999999998
No 382
>PF02981 FokI_N: Restriction endonuclease FokI, recognition domain; InterPro: IPR004234 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. Thie entry represents the type IIS restriction endonuclease FokI (3.1.21.4 from EC), which is a member of an unusual class of bipartite restriction enzymes that recognise a specific DNA sequence and cleave DNA nonspecifically a short distance away from that sequence []. FokI contains amino- and carboxy-terminal domains corresponding to the DNA-recognition and cleavage functions (IPR004233 from INTERPRO), respectively. The recognition domain is made of three smaller subdomains (D1, D2 and D3) which are evolutionarily related to the helix-turn-helix-containing DNA-binding domain of the catabolite gene activator protein CAP []. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 1FOK_A 2FOK_B.
Probab=68.06 E-value=4.5 Score=31.44 Aligned_cols=35 Identities=29% Similarity=0.485 Sum_probs=29.1
Q ss_pred cHHHHHHHHhcCcceeccccccCCCeEecChhchhhhc
Q 043063 39 NLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVT 76 (301)
Q Consensus 39 ~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~ 76 (301)
....+||-.+++|||+.+. +.+.|.+|.+++.++.
T Consensus 108 ~Ad~flrwAvslgfl~~~~---~~Dtf~IT~lG~~~~~ 142 (145)
T PF02981_consen 108 TADGFLRWAVSLGFLDYDR---ETDTFSITELGKKYVK 142 (145)
T ss_dssp HHHHHHHHHHHTTSEEEET---TTTEEEE-HHHHHHHH
T ss_pred CccceeeeeeeeCceeecc---CCCEEEeehhHHHHhh
Confidence 3567899999999999996 6789999999987654
No 383
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=67.32 E-value=3.2 Score=37.94 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=27.8
Q ss_pred ceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCc
Q 043063 162 KRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFK 199 (301)
Q Consensus 162 ~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~ 199 (301)
.++||++||+| +.+|. +++++.+++ .++++|+.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 36999999996 46676 677766654 2468888888753
No 384
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=67.25 E-value=4.5 Score=34.03 Aligned_cols=42 Identities=7% Similarity=0.079 Sum_probs=35.9
Q ss_pred cccccCCC--CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 11 KKGRLANT--PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 11 lf~~L~~g--~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
|++.+..| ..|..|||+++++ .+.-+++.+..|+..|++...
T Consensus 167 Vl~~~~~g~~g~s~~eIa~~l~i----S~~Tv~~~~~~~~~~~~~~~~ 210 (225)
T PRK10046 167 VRKLFKEPGVQHTAETVAQALTI----SRTTARRYLEYCASRHLIIAE 210 (225)
T ss_pred HHHHHHcCCCCcCHHHHHHHhCc----cHHHHHHHHHHHHhCCeEEEE
Confidence 44555554 5899999999999 699999999999999999876
No 385
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=67.18 E-value=4.6 Score=32.87 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=37.4
Q ss_pred cccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 11 KKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 11 lf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
|++.|.. |-.|=++||..+|+ ...-++++|..|...|++...
T Consensus 23 v~~~l~~kge~tDeela~~l~i----~~~~vrriL~~L~e~~li~~~ 65 (176)
T COG1675 23 VVDALLEKGELTDEELAELLGI----KKNEVRRILYALYEDGLISYR 65 (176)
T ss_pred HHHHHHhcCCcChHHHHHHhCc----cHHHHHHHHHHHHhCCceEEE
Confidence 5666765 77999999999999 899999999999999999965
No 386
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=67.05 E-value=4.3 Score=33.20 Aligned_cols=69 Identities=20% Similarity=0.387 Sum_probs=45.4
Q ss_pred CcceEEeecCCc------------e-e--eeehhHHHhhCCC----C-----CceeEEeCCCCcc-----CC------c-
Q 043063 160 GVKRLVDVGGSA------------G-I--NFDLPEVVAEAPS----I-----PGVTHIGGDMFKS-----IP------A- 203 (301)
Q Consensus 160 ~~~~vlDvGgG~------------g-~--~~Dlp~v~~~a~~----~-----~ri~~~~gd~~~~-----~p------~- 203 (301)
+...||.+|||- + . -+|+|++++.-++ . .+.++++.|+.++ +. +
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 456999999999 1 2 2477998876432 1 2367899999854 11 1
Q ss_pred ccEeeHhhhhccCChHHHHHHHHHH
Q 043063 204 ADAIFMKWVLTTWTDDECKLIMENC 228 (301)
Q Consensus 204 ~D~v~~~~vlh~~~d~~~~~iL~~~ 228 (301)
.-++++-.++.+++++++..+|+.+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 1578888889999999888888865
No 387
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=66.90 E-value=3.2 Score=36.08 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=39.3
Q ss_pred cccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 9 GGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 9 lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
..|.+.|.+ +..++.|||+.+++ .+.-++|=|+.|...|++.+..
T Consensus 8 ~~Il~~L~~~~~v~v~eLa~~l~V----S~~TIRRDL~~Le~~g~l~r~~ 53 (256)
T PRK10434 8 AAILEYLQKQGKTSVEELAQYFDT----TGTTIRKDLVILEHAGTVIRTY 53 (256)
T ss_pred HHHHHHHHHcCCEEHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEE
Confidence 346777875 88999999999999 6888999999999999999883
No 388
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.66 E-value=16 Score=31.16 Aligned_cols=83 Identities=22% Similarity=0.346 Sum_probs=54.8
Q ss_pred CcceEEeecCCce----------------eeeehh--------HHHhhCCCCCceeEEeCCCCccC----Cc-----ccE
Q 043063 160 GVKRLVDVGGSAG----------------INFDLP--------EVVAEAPSIPGVTHIGGDMFKSI----PA-----ADA 206 (301)
Q Consensus 160 ~~~~vlDvGgG~g----------------~~~Dlp--------~v~~~a~~~~ri~~~~gd~~~~~----p~-----~D~ 206 (301)
+.++++|||.=+| +.+|.+ +.++.|.-...|+++.|+..+.+ +. .|.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 5688999987663 334542 34444445689999999887542 22 276
Q ss_pred eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCC
Q 043063 207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPD 247 (301)
Q Consensus 207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~ 247 (301)
+|+= +|.+. ......++.+.+++||.|++-....+.
T Consensus 153 aFvD----adK~n-Y~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 153 AFVD----ADKDN-YSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred EEEc----cchHH-HHHHHHHHHhhcccccEEEEeccccCC
Confidence 5542 34454 448889999999999988776655543
No 389
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=66.64 E-value=4.4 Score=35.92 Aligned_cols=37 Identities=14% Similarity=0.335 Sum_probs=33.2
Q ss_pred CCCCCCHHHHHHHhCCCCCCCcccHHHHHH-HHhcCcceecc
Q 043063 16 ANTPLSASQILTRILPSGGGDAENLQRILR-LLTNYGVFSEH 56 (301)
Q Consensus 16 ~~g~~t~~ela~~~~~~~~~~~~~l~~lL~-~L~~~g~l~~~ 56 (301)
.+++.+++++|+.+|. ++..+++.++ .|+..|++...
T Consensus 252 ~~~~~~~~~ia~~lg~----~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 252 QGGPVGLKTLAAALGE----DADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred CCCcccHHHHHHHhCC----CcchHHHhhhHHHHHcCCcccC
Confidence 3568999999999999 7899999999 79999999866
No 390
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=66.43 E-value=4.8 Score=32.60 Aligned_cols=54 Identities=13% Similarity=0.079 Sum_probs=41.7
Q ss_pred ccccccccccccC--CCCCCHHHHHHHhCCCCCC-CcccHHHHHHHHhcCcceeccc
Q 043063 4 NECRDGGKKGRLA--NTPLSASQILTRILPSGGG-DAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 4 ~~a~~lglf~~L~--~g~~t~~ela~~~~~~~~~-~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
.|..+.-|++.|. +++.|+++|.+.+.-..|. +..-+.|.|+.|+..|+|.+..
T Consensus 24 ~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~~ 80 (169)
T PRK11639 24 LTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKVE 80 (169)
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEEe
Confidence 3556677888886 3789999999888653221 4567889999999999999873
No 391
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=66.32 E-value=9.1 Score=32.45 Aligned_cols=43 Identities=26% Similarity=0.384 Sum_probs=36.3
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE 69 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 69 (301)
+.|-.+||..+|+ .+..+.|.|+.|...|+++.. ..+++.+..
T Consensus 179 ~lt~~~IA~~lGi----sretlsR~L~~L~~~GlI~~~----~~~~i~I~D 221 (230)
T PRK09391 179 PMSRRDIADYLGL----TIETVSRALSQLQDRGLIGLS----GARQIELRN 221 (230)
T ss_pred cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEec----CCceEEEcC
Confidence 6789999999999 799999999999999999876 135666543
No 392
>PRK01381 Trp operon repressor; Provisional
Probab=65.68 E-value=3 Score=30.44 Aligned_cols=27 Identities=15% Similarity=-0.031 Sum_probs=24.0
Q ss_pred ccccccccccCCCCCCHHHHHHHhCCC
Q 043063 6 CRDGGKKGRLANTPLSASQILTRILPS 32 (301)
Q Consensus 6 a~~lglf~~L~~g~~t~~ela~~~~~~ 32 (301)
+.+++|+..|..|.+|-.|||+.+|+|
T Consensus 42 ~~R~~I~~~L~~g~~sQREIa~~lGvS 68 (99)
T PRK01381 42 GTRVRIVEELLRGELSQREIKQELGVG 68 (99)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHhCCc
Confidence 457899999988999999999999994
No 393
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=65.44 E-value=2.7 Score=30.36 Aligned_cols=27 Identities=19% Similarity=0.071 Sum_probs=23.6
Q ss_pred ccccccccccCCCCCCHHHHHHHhCCC
Q 043063 6 CRDGGKKGRLANTPLSASQILTRILPS 32 (301)
Q Consensus 6 a~~lglf~~L~~g~~t~~ela~~~~~~ 32 (301)
+.++||+..|..++.|-.|||+.+|+|
T Consensus 42 ~~R~~i~~~Ll~~~~tQrEIa~~lGiS 68 (94)
T TIGR01321 42 GDRIRIVNELLNGNMSQREIASKLGVS 68 (94)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHhCCC
Confidence 457889998877899999999999994
No 394
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=65.41 E-value=2 Score=32.42 Aligned_cols=65 Identities=22% Similarity=0.262 Sum_probs=44.2
Q ss_pred cccccccccccCC--CCCCHHHHHHHhCCCCCC-CcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063 5 ECRDGGKKGRLAN--TPLSASQILTRILPSGGG-DAENLQRILRLLTNYGVFSEHREFGGERKYSLTE 69 (301)
Q Consensus 5 ~a~~lglf~~L~~--g~~t~~ela~~~~~~~~~-~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 69 (301)
|..+.-|++.|.+ ++.|+++|.+.+.-..|. +..-+.|.|+.|...|++.+....+....|..+.
T Consensus 7 T~~R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~~~~~~~~~Y~~~~ 74 (120)
T PF01475_consen 7 TPQRLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKIEFGDGESRYELST 74 (120)
T ss_dssp HHHHHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEETTSEEEEEESS
T ss_pred CHHHHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEEEcCCCcceEeecC
Confidence 4455667777763 689999999988642111 3446889999999999999884321223566654
No 395
>PRK09462 fur ferric uptake regulator; Provisional
Probab=65.36 E-value=6.8 Score=30.82 Aligned_cols=65 Identities=20% Similarity=0.295 Sum_probs=44.9
Q ss_pred ccccccccccccC--C-CCCCHHHHHHHhCCCCCC-CcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063 4 NECRDGGKKGRLA--N-TPLSASQILTRILPSGGG-DAENLQRILRLLTNYGVFSEHREFGGERKYSLT 68 (301)
Q Consensus 4 ~~a~~lglf~~L~--~-g~~t~~ela~~~~~~~~~-~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 68 (301)
.|..+.-|++.|. . ++.|+++|-+.+.-..|. +..-+.|.|+.|+..|++.+...+++..+|.++
T Consensus 15 ~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~~~~~~~~~~y~~~ 83 (148)
T PRK09462 15 VTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFELT 83 (148)
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCcEEEEeC
Confidence 3566777888885 2 589999999888542221 456788999999999999876321112356553
No 396
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=65.17 E-value=15 Score=32.10 Aligned_cols=104 Identities=19% Similarity=0.255 Sum_probs=59.7
Q ss_pred HHHHHHhcCCccc----hHHhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------
Q 043063 135 LMRKAMSGVSVPF----MTSILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------- 186 (301)
Q Consensus 135 ~~~~~m~~~~~~~----~~~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------- 186 (301)
.|..+|--.++.. +.-++..++ ..+..+||+-|.|+| .-||. ....+.|.+
T Consensus 77 LWTl~LphRTQI~Yt~Dia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi 155 (314)
T KOG2915|consen 77 LWTLALPHRTQILYTPDIAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI 155 (314)
T ss_pred HhhhhccCcceEEecccHHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC
Confidence 4455555444432 344556665 888999999999995 23565 223333332
Q ss_pred CCceeEEeCCCCcc-CCc----ccEeeHhhhhccCChHHHHHHHHHHHHhCCCC-CEEEEeccccC
Q 043063 187 IPGVTHIGGDMFKS-IPA----ADAIFMKWVLTTWTDDECKLIMENCYKAIPAG-GKLIACEPVLP 246 (301)
Q Consensus 187 ~~ri~~~~gd~~~~-~p~----~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pg-g~lli~e~~~~ 246 (301)
.+++++...|+-.. ++. +|.|++ ++|.+. ..+-.++++|+-+ |+|...-+|++
T Consensus 156 ~~~vt~~hrDVc~~GF~~ks~~aDaVFL-----DlPaPw--~AiPha~~~lk~~g~r~csFSPCIE 214 (314)
T KOG2915|consen 156 GDNVTVTHRDVCGSGFLIKSLKADAVFL-----DLPAPW--EAIPHAAKILKDEGGRLCSFSPCIE 214 (314)
T ss_pred CcceEEEEeecccCCccccccccceEEE-----cCCChh--hhhhhhHHHhhhcCceEEeccHHHH
Confidence 37889988888765 443 587765 334322 2233333455544 36655555553
No 397
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=64.93 E-value=5.5 Score=31.41 Aligned_cols=41 Identities=15% Similarity=0.075 Sum_probs=34.3
Q ss_pred cccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcce
Q 043063 9 GGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVF 53 (301)
Q Consensus 9 lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l 53 (301)
.-|+++|.. +.+|=++||+.+|+ +...++++|..|..-+++
T Consensus 4 ~~v~d~L~~~~~~~dedLa~~l~i----~~n~vRkiL~~L~ed~~~ 45 (147)
T smart00531 4 FLVLDALMRNGCVTEEDLAELLGI----KQKQLRKILYLLYDEKLI 45 (147)
T ss_pred EeehHHHHhcCCcCHHHHHHHhCC----CHHHHHHHHHHHHhhhcc
Confidence 346777754 88999999999999 899999999999994443
No 398
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=64.85 E-value=4 Score=37.42 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=26.8
Q ss_pred ceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCc
Q 043063 162 KRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFK 199 (301)
Q Consensus 162 ~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~ 199 (301)
.++||++||+| +.+|. +..++.+++ .++++|+.+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 47999999996 45676 666665543 2478888887643
No 399
>PRK00215 LexA repressor; Validated
Probab=64.72 E-value=8.7 Score=31.95 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.+.|..|||+++|+. ++..+.++|+.|...|++++.
T Consensus 22 ~~~s~~ela~~~~~~---~~~tv~~~l~~L~~~g~i~~~ 57 (205)
T PRK00215 22 YPPSRREIADALGLR---SPSAVHEHLKALERKGFIRRD 57 (205)
T ss_pred CCCCHHHHHHHhCCC---ChHHHHHHHHHHHHCCCEEeC
Confidence 467999999999982 367999999999999999988
No 400
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=64.68 E-value=8.9 Score=32.35 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=35.6
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT 68 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 68 (301)
+.|-++||+.+|+ .+..+.|.|.-|...|+++.. .+++.+.
T Consensus 169 ~~t~~~lA~~lG~----sretvsR~L~~L~~~G~I~~~-----~~~i~I~ 209 (226)
T PRK10402 169 HEKHTQAAEYLGV----SYRHLLYVLAQFIQDGYLKKS-----KRGYLIK 209 (226)
T ss_pred cchHHHHHHHHCC----cHHHHHHHHHHHHHCCCEEee-----CCEEEEe
Confidence 4688999999999 799999999999999999987 4566654
No 401
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=64.55 E-value=10 Score=28.99 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=31.6
Q ss_pred CHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 21 SASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 21 t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
|+.+||..+|+ ||.-++|-.+-|...|++...+
T Consensus 37 SvRelA~~~~V----NpnTv~raY~eLE~eG~i~t~r 69 (125)
T COG1725 37 SVRELAKDLGV----NPNTVQRAYQELEREGIVETKR 69 (125)
T ss_pred cHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEec
Confidence 89999999999 9999999999999999999884
No 402
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=63.91 E-value=5.2 Score=27.48 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceec
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSE 55 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~ 55 (301)
...|..|||+.+|+ .+..++.++..+...|.+..
T Consensus 31 eGlS~kEIAe~LGI----S~~TVk~~l~~~~~~~~~~~ 64 (73)
T TIGR03879 31 AGKTASEIAEELGR----TEQTVRNHLKGETKAGGLVK 64 (73)
T ss_pred cCCCHHHHHHHHCc----CHHHHHHHHhcCcccchHHH
Confidence 56899999999999 79999999998888887754
No 403
>PRK09954 putative kinase; Provisional
Probab=63.88 E-value=4.7 Score=36.80 Aligned_cols=43 Identities=9% Similarity=0.035 Sum_probs=37.6
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCccee
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFS 54 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~ 54 (301)
+..|++.|.+ +++|..+||+.+++ ....+.+.|+.|...|++.
T Consensus 5 ~~~il~~l~~~~~~s~~~la~~l~~----s~~~v~~~i~~L~~~g~i~ 48 (362)
T PRK09954 5 EKEILAILRRNPLIQQNEIADILQI----SRSRVAAHIMDLMRKGRIK 48 (362)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCcC
Confidence 4457777875 68999999999999 6889999999999999985
No 404
>PF08222 HTH_CodY: CodY helix-turn-helix domain; InterPro: IPR013198 This family consists of the C-terminal helix-turn-helix domain found in several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; PDB: 2B0L_C.
Probab=63.67 E-value=4.7 Score=26.09 Aligned_cols=35 Identities=29% Similarity=0.288 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
|-++++.||.+.|+ -...+-.-||-|.+.|+++..
T Consensus 3 g~lvas~iAd~~Gi----TRSvIVNALRKleSaGvIesr 37 (61)
T PF08222_consen 3 GRLVASKIADRVGI----TRSVIVNALRKLESAGVIESR 37 (61)
T ss_dssp EEE-HHHHHHHHT------HHHHHHHHHHHHHTTSEEEE
T ss_pred ceehHHHHHHHhCc----cHHHHHHHHHHHHhcCceeec
Confidence 45688999999999 677888899999999999865
No 405
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=63.51 E-value=6.7 Score=32.01 Aligned_cols=45 Identities=18% Similarity=0.048 Sum_probs=38.1
Q ss_pred ccccccccCC-C-CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 8 DGGKKGRLAN-T-PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 8 ~lglf~~L~~-g-~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
+..|.+.|.. | ..|+-+||+++|+ +..-+.|-|..|-..|.|...
T Consensus 6 ~~~i~~~l~~~~~~~~a~~i~k~l~i----~k~~vNr~LY~L~~~~~v~~~ 52 (183)
T PHA02701 6 ASLILTLLSSSGDKLPAKRIAKELGI----SKHEANRCLYRLLESDAVSCE 52 (183)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHhCc----cHHHHHHHHHHHhhcCcEecC
Confidence 3457788875 5 6999999999999 788899999999999999655
No 406
>PF08820 DUF1803: Domain of unknown function (DUF1803); InterPro: IPR014924 This small protein is found in one or two copies in bacteria. The function of this is unknown.
Probab=63.40 E-value=9.9 Score=27.43 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE 69 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 69 (301)
.+.+..+|-+..- ...++.++++.++.+|++.+. +++|.++-
T Consensus 27 ~~~lLR~iKk~f~-----~qk~~D~fie~li~~GYI~re-----~krY~L~~ 68 (93)
T PF08820_consen 27 TDFLLRFIKKDFP-----KQKRLDIFIEALIKLGYIERE-----EKRYYLNL 68 (93)
T ss_pred CHhhHHHHHHhhc-----cccchhHHHHHHHHcCCeEec-----CCEEEEec
Confidence 4566777776653 367899999999999999996 78999874
No 407
>PF04492 Phage_rep_O: Bacteriophage replication protein O ; InterPro: IPR006497 This entry is represented by the N-terminal domain of Bacteriophage lambda, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0006260 DNA replication
Probab=63.07 E-value=12 Score=27.41 Aligned_cols=34 Identities=24% Similarity=0.232 Sum_probs=31.7
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.+|..++++.+|+ ++..+.+-+..|+.+|+|...
T Consensus 54 ~Is~sq~~e~tg~----~~~~V~~al~~Li~~~vI~~~ 87 (100)
T PF04492_consen 54 RISNSQIAEMTGL----SRDHVSKALNELIRRGVIIRD 87 (100)
T ss_pred eeeHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC
Confidence 5789999999999 789999999999999999877
No 408
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=62.08 E-value=2.9 Score=34.36 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=48.6
Q ss_pred CcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccC-----C-c-ccEeeHh
Q 043063 160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSI-----P-A-ADAIFMK 210 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~-----p-~-~D~v~~~ 210 (301)
...++||+=||+| +.+|. +..++..++ .++++++.+|.+..+ . . .|+|++-
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 3579999988885 45565 444444332 357999999977542 1 2 4998876
Q ss_pred hhhccCChHH-HHHHHHHHH--HhCCCCCEEEEeccccC
Q 043063 211 WVLTTWTDDE-CKLIMENCY--KAIPAGGKLIACEPVLP 246 (301)
Q Consensus 211 ~vlh~~~d~~-~~~iL~~~~--~aL~pgg~lli~e~~~~ 246 (301)
=-. .... ..++|+.+. ..|+++|.++ +|.-..
T Consensus 122 PPY---~~~~~~~~~l~~l~~~~~l~~~~~ii-~E~~~~ 156 (183)
T PF03602_consen 122 PPY---AKGLYYEELLELLAENNLLNEDGLII-IEHSKK 156 (183)
T ss_dssp -ST---TSCHHHHHHHHHHHHTTSEEEEEEEE-EEEETT
T ss_pred CCc---ccchHHHHHHHHHHHCCCCCCCEEEE-EEecCC
Confidence 432 2222 356777776 6777777554 555443
No 409
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=61.51 E-value=6.3 Score=35.50 Aligned_cols=48 Identities=10% Similarity=0.233 Sum_probs=39.1
Q ss_pred cCCCCCCHHHHHHHhCCCCCCCcccHHHHHH-HHhcCcceeccccccCCCeEecChhc
Q 043063 15 LANTPLSASQILTRILPSGGGDAENLQRILR-LLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 15 L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~-~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
+..++.+++.+|+.+|. ++..++..++ .|+..|++++. +..-..|+.+
T Consensus 272 ~~~~~~~~~~~a~~lg~----~~~~~~~~~e~~Li~~~li~~~-----~~gr~~~~~~ 320 (328)
T PRK00080 272 FGGGPVGLDTLAAALGE----ERDTIEDVYEPYLIQQGFIQRT-----PRGRVATPKA 320 (328)
T ss_pred cCCCceeHHHHHHHHCC----CcchHHHHhhHHHHHcCCcccC-----CchHHHHHHH
Confidence 34578999999999999 8899999999 99999999876 3334555555
No 410
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=61.49 E-value=9.3 Score=33.99 Aligned_cols=85 Identities=21% Similarity=0.279 Sum_probs=47.0
Q ss_pred CCCcceEEeecCCce----------------------eeeeh-hHHHhhCCC--------CCceeEEeCCCCcc--CC--
Q 043063 158 FKGVKRLVDVGGSAG----------------------INFDL-PEVVAEAPS--------IPGVTHIGGDMFKS--IP-- 202 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------------~~~Dl-p~v~~~a~~--------~~ri~~~~gd~~~~--~p-- 202 (301)
.....+|+|-.||+| .++|. +.++..+.. ...+.+..+|.+.. ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 445678999999996 23455 444333221 23345778888764 22
Q ss_pred -cccEeeHhhhhccC--------------------ChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 203 -AADAIFMKWVLTTW--------------------TDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 203 -~~D~v~~~~vlh~~--------------------~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
..|+|++.--+-.. ...+ ..++.++.+.|++||++.++-+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAE-YAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHH-HHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchh-hhhHHHHHhhcccccceeEEec
Confidence 24777764322211 1122 2478889999999998655543
No 411
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=61.28 E-value=21 Score=31.63 Aligned_cols=87 Identities=17% Similarity=0.171 Sum_probs=52.8
Q ss_pred CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCcc---CCc--ccE
Q 043063 158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKS---IPA--ADA 206 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~---~p~--~D~ 206 (301)
..++.+++-||||-| ..+|. ..|++...+ ..+|.++.||-+.- .+. .|+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 456789999999995 23344 334433322 47999999987753 333 387
Q ss_pred eeHhhhhccCChHH---HHHHHHHHHHhCCCCCEEEEecccc
Q 043063 207 IFMKWVLTTWTDDE---CKLIMENCYKAIPAGGKLIACEPVL 245 (301)
Q Consensus 207 v~~~~vlh~~~d~~---~~~iL~~~~~aL~pgg~lli~e~~~ 245 (301)
|+.-.-= ...+.. -.....-+.+||+|+|.+.+...+.
T Consensus 199 ii~dssd-pvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~ 239 (337)
T KOG1562|consen 199 IITDSSD-PVGPACALFQKPYFGLVLDALKGDGVVCTQGECM 239 (337)
T ss_pred EEEecCC-ccchHHHHHHHHHHHHHHHhhCCCcEEEEeccee
Confidence 6643211 011111 1234556778999999988877554
No 412
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=60.87 E-value=5.6 Score=34.48 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=38.9
Q ss_pred ccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 10 GKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 10 glf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.|.++|.+ |.++++|||+.+++ .+.=++|=|+.|...|++.+.
T Consensus 9 ~Il~~l~~~g~v~v~eLa~~~~V----S~~TIRRDL~~Le~~g~l~R~ 52 (253)
T COG1349 9 KILELLKEKGKVSVEELAELFGV----SEMTIRRDLNELEEQGLLLRV 52 (253)
T ss_pred HHHHHHHHcCcEEHHHHHHHhCC----CHHHHHHhHHHHHHCCcEEEE
Confidence 46777875 88999999999999 688999999999999999998
No 413
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=60.56 E-value=2.9 Score=25.99 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=22.6
Q ss_pred cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCc
Q 043063 7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYG 51 (301)
Q Consensus 7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g 51 (301)
.++.++..+.+ ..|..+||+.+|+ ++.-+.+|++.....|
T Consensus 6 ~R~~ii~l~~~-G~s~~~ia~~lgv----s~~Tv~~w~kr~~~~G 45 (50)
T PF13384_consen 6 RRAQIIRLLRE-GWSIREIAKRLGV----SRSTVYRWIKRYREEG 45 (50)
T ss_dssp ----HHHHHHH-T--HHHHHHHHTS-----HHHHHHHHT------
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHCc----CHHHHHHHHHHccccc
Confidence 34445555554 6799999999999 7999999998776655
No 414
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=59.90 E-value=13 Score=33.92 Aligned_cols=42 Identities=12% Similarity=0.020 Sum_probs=37.5
Q ss_pred cccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 11 KKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 11 lf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
+.+.+...|.+++.|++.+|+ ....+..+|-.|.-.|.+.+.
T Consensus 301 ~~~~~~~~~~~~d~l~~~~~~----~~~~~~~~L~~lel~G~i~~~ 342 (350)
T COG0758 301 LLANLGDEPKEIDRLASCTGL----TIAQVLAWLLELELEGKVKRL 342 (350)
T ss_pred HHHHhcCCCccHHHHHHHhCC----CHHHHHHHHHHHHhcCcEEee
Confidence 456666789999999999999 788999999999999999988
No 415
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.60 E-value=19 Score=28.50 Aligned_cols=80 Identities=25% Similarity=0.429 Sum_probs=50.6
Q ss_pred CcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCcc-cE-ee-Hhhhh
Q 043063 160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPAA-DA-IF-MKWVL 213 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~~-D~-v~-~~~vl 213 (301)
+..+++|+|.|-| +++++ |..+.-++- ..+..|+.-|+++- +... .+ || .-.++
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFgaes~m 151 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFGAESVM 151 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEeehHHHH
Confidence 4578999999995 45566 555544331 36778888888764 4443 22 22 22222
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEeccccCC
Q 043063 214 TTWTDDECKLIMENCYKAIPAGGKLIACEPVLPD 247 (301)
Q Consensus 214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~ 247 (301)
..+-.|++.-|+.+.+++-+-+-.|+
T Consensus 152 --------~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 152 --------PDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred --------hhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 23445667678889999988876654
No 416
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=59.26 E-value=19 Score=30.33 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
..++..+||+.+|+ ....++.-|+.|.+.|+|+..+ +..+...+.+
T Consensus 29 ~~L~e~eLae~lgV----SRtpVREAL~~L~~eGlv~~~~----~~G~~V~~~~ 74 (224)
T PRK11534 29 EKLRMSLLTSRYAL----GVGPLREALSQLVAERLVTVVN----QKGYRVASMS 74 (224)
T ss_pred CcCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEEeC----CCceEeCCCC
Confidence 46788999999999 5789999999999999999873 4445555543
No 417
>PF14557 AphA_like: Putative AphA-like transcriptional regulator
Probab=59.24 E-value=8 Score=31.03 Aligned_cols=70 Identities=20% Similarity=0.233 Sum_probs=52.3
Q ss_pred CCccccccccccccCCCCCCHHHHHHHhCC--C---CCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhch
Q 043063 2 EDNECRDGGKKGRLANTPLSASQILTRILP--S---GGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGK 72 (301)
Q Consensus 2 ~~~~a~~lglf~~L~~g~~t~~ela~~~~~--~---~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~ 72 (301)
-.+.|++|+++-.|+++|.+++++|+.+.- | .| ....+..-++.|...|+|+-....+ .+..|.+|+.++
T Consensus 7 ~pre~v~L~vLG~la~~p~~~~~va~~vrh~~sr~~gp-s~~Ll~~sie~Lr~eGlve~~~g~g~e~~a~l~iT~~Gr 83 (175)
T PF14557_consen 7 TPREAVRLCVLGTLARGPRRYEEVAGAVRHFASRIWGP-SLDLLGTSIELLREEGLVEAVDGEGMEDNALLAITDAGR 83 (175)
T ss_pred CHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhccccccC-chhhhhhHHHHHHhcCCcccccccCCCccceeeeCcchH
Confidence 346789999999999999999999987642 1 22 4567888899999999999762111 234688888774
No 418
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=58.93 E-value=8.2 Score=27.65 Aligned_cols=34 Identities=15% Similarity=0.308 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCcceeccccccCCCeEecChhchhhhcC
Q 043063 40 LQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTD 77 (301)
Q Consensus 40 l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~ 77 (301)
+.=-+.+|...|+|++. ..|.|++|+.++.+...
T Consensus 57 i~Wa~~~L~~aGli~~~----~rG~~~iT~~G~~~l~~ 90 (92)
T PF14338_consen 57 IRWARSYLKKAGLIERP----KRGIWRITEKGRKALAE 90 (92)
T ss_pred HHHHHHHHHHCCCccCC----CCCceEECHhHHHHHhh
Confidence 33346789999999987 47899999999865543
No 419
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=58.84 E-value=15 Score=30.72 Aligned_cols=58 Identities=17% Similarity=0.227 Sum_probs=33.7
Q ss_pred CCceeEEeCCCCcc---CCc------cc-EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 187 IPGVTHIGGDMFKS---IPA------AD-AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 187 ~~ri~~~~gd~~~~---~p~------~D-~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
.+||+++.||-.++ .+. +. ++++=-.=|.+ +.+...|+.....++||+.++|.|....
T Consensus 84 ~~rI~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~~~ 151 (206)
T PF04989_consen 84 SPRITFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTH--EHVLAELEAYAPLVSPGSYLIVEDTIIE 151 (206)
T ss_dssp -TTEEEEES-SSSTHHHHTSGSS----SSEEEEESS------SSHHHHHHHHHHT--TT-EEEETSHHHH
T ss_pred cCceEEEECCCCCHHHHHHHHHhhccCCceEEEECCCccH--HHHHHHHHHhCccCCCCCEEEEEecccc
Confidence 48999999998754 111 11 22222222323 3467889999999999999999998764
No 420
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=58.52 E-value=10 Score=25.84 Aligned_cols=48 Identities=19% Similarity=0.166 Sum_probs=32.3
Q ss_pred CCCCHH---HHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063 18 TPLSAS---QILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI 70 (301)
Q Consensus 18 g~~t~~---ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 70 (301)
+++++. ++.+..|+ ++..++.-|--|++.|+|+..+.+ ..-.|++|+-
T Consensus 19 ~~i~~~~Li~ll~~~Gv----~e~avR~alsRl~~~G~L~~~r~G-r~~~Y~Lt~~ 69 (70)
T PF07848_consen 19 GWIWVASLIRLLAAFGV----SESAVRTALSRLVRRGWLESERRG-RRSYYRLTER 69 (70)
T ss_dssp S-EEHHHHHHHHCCTT------HHHHHHHHHHHHHTTSEEEECCC-TEEEEEE-HH
T ss_pred CceeHHHHHHHHHHcCC----ChHHHHHHHHHHHHcCceeeeecC-ccceEeeCCC
Confidence 455544 45677788 799999999999999999988411 1126999874
No 421
>TIGR01714 phage_rep_org_N phage replisome organizer, putative, N-terminal region. This model represents the N-terminal domain of a small family of phage proteins. The protein contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The region covered by this model is N-terminal to the low-complexity region.
Probab=58.14 E-value=21 Score=27.12 Aligned_cols=46 Identities=15% Similarity=0.256 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
-|-|.+.||..++- +..-++.-|..+..+|+++.. ++|.|.++...
T Consensus 50 ipy~~e~LA~~~~~----~~~~V~~Al~~f~k~glIe~~----d~g~i~i~~~~ 95 (119)
T TIGR01714 50 APYNAEMLATMFNR----NVGDIRITLQTLESLGLIEKK----NNGDIFLENWE 95 (119)
T ss_pred CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe----cCCcEEehhHH
Confidence 58899999999998 788999999999999999988 46777777643
No 422
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=58.01 E-value=11 Score=26.70 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.-+|...|++++++ +-...++.|+.|...|++...
T Consensus 40 K~ITps~lserlkI----~~SlAr~~Lr~L~~kG~Ik~V 74 (86)
T PRK09334 40 KIVTPYTLASKYGI----KISVAKKVLRELEKRGVLVLY 74 (86)
T ss_pred cEEcHHHHHHHhcc----hHHHHHHHHHHHHHCCCEEEE
Confidence 34799999999999 788999999999999999765
No 423
>PF05491 RuvB_C: Holliday junction DNA helicase ruvB C-terminus; InterPro: IPR008823 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the C-terminal region of the proteins; it is thought to be a helicase DNA-binding domain.; GO: 0003677 DNA binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3PFI_B 1IXR_C 1HQC_B 1IXS_B 1IN8_A 1IN4_A 1IN5_A 1J7K_A 1IN6_A 1IN7_A.
Probab=57.55 E-value=13 Score=25.81 Aligned_cols=47 Identities=13% Similarity=0.256 Sum_probs=34.0
Q ss_pred CCCCCCHHHHHHHhCCCCCCCcccHHHHH-HHHhcCcceeccccccCCCeEecChhc
Q 043063 16 ANTPLSASQILTRILPSGGGDAENLQRIL-RLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 16 ~~g~~t~~ela~~~~~~~~~~~~~l~~lL-~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
.+||..++.||..+|. ++.-++... =+|...|++.+.+ .|+ .+|+.+
T Consensus 22 ~ggPvGl~tlA~~l~e----d~~Tie~v~EPyLiq~G~I~RT~----rGR-~~T~~a 69 (76)
T PF05491_consen 22 KGGPVGLDTLAAALGE----DKETIEDVIEPYLIQIGFIQRTP----RGR-VATPKA 69 (76)
T ss_dssp TTS-B-HHHHHHHTTS-----HHHHHHTTHHHHHHTTSEEEET----TEE-EE-HHH
T ss_pred CCCCeeHHHHHHHHCC----CHhHHHHHhhHHHHHhhhHhhCc----cHH-HhHHHH
Confidence 4689999999999998 777777655 4799999999993 555 666655
No 424
>PRK11642 exoribonuclease R; Provisional
Probab=57.16 E-value=9.7 Score=38.89 Aligned_cols=55 Identities=24% Similarity=0.289 Sum_probs=41.5
Q ss_pred ccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063 10 GKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT 68 (301)
Q Consensus 10 glf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 68 (301)
.|++.|.+ .|.+..+|++.++++.......+.+.|+.|...|.|.+.+ .+.|.+.
T Consensus 23 ~Il~~l~~~~~~~~~~~L~~~l~l~~~~~~~~l~~~L~~L~~~g~l~~~~----~~~~~~~ 79 (813)
T PRK11642 23 FILEHLTKREKPASREELAVELNIEGEEQLEALRRRLRAMERDGQLVFTR----RQCYALP 79 (813)
T ss_pred HHHHHHHhcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHHHHCCCEEEcC----CceEecC
Confidence 36666653 7899999999999942212356999999999999999873 5567655
No 425
>COG3398 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.12 E-value=12 Score=31.59 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=44.8
Q ss_pred ccccccCCC-CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063 10 GKKGRLANT-PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK 72 (301)
Q Consensus 10 glf~~L~~g-~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~ 72 (301)
.+++.|.++ ..|.-+||.+.|+ +..-+.--+..|...|++.+++++ ..-.|..||.-+
T Consensus 178 ~I~~eiq~~~~~t~~~ia~~l~l----s~aTV~~~lk~l~~~Gii~~~~~G-r~iiy~in~s~~ 236 (240)
T COG3398 178 AIIYEIQENKCNTNLLIAYELNL----SVATVAYHLKKLEELGIIPEDREG-RSIIYSINPSIE 236 (240)
T ss_pred HHHHHHhcCCcchHHHHHHHcCc----cHHHHHHHHHHHHHcCCCcccccC-ceEEEEeCHHHH
Confidence 466677664 4899999999999 788889999999999999999522 112488877543
No 426
>COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]
Probab=57.02 E-value=17 Score=28.99 Aligned_cols=54 Identities=24% Similarity=0.321 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhh
Q 043063 17 NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSL 74 (301)
Q Consensus 17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l 74 (301)
+.|+++.+|+..++.. |-..+..-||-|...|+++..+.+ .+-.|..|+.+...
T Consensus 96 dR~K~laDic~~ln~e---Dth~itYslrKL~k~gLit~t~~g-kevTy~vTa~G~~a 149 (199)
T COG5631 96 DRPKSLADICQMLNRE---DTHNITYSLRKLLKGGLITRTGSG-KEVTYEVTALGHRA 149 (199)
T ss_pred CchhhHHHHHHHhccc---cchhHHHHHHHHHhccceecCCCC-ceEEEEEecchHHH
Confidence 3689999999999984 677899999999999999988532 12469999877543
No 427
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=56.85 E-value=18 Score=30.03 Aligned_cols=46 Identities=22% Similarity=0.323 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
..++-.+||+.+|+ ....++.-|+.|.+.|+|+..+ +..+..++.+
T Consensus 33 ~~L~e~~La~~lgV----SRtpVReAL~~L~~eGlv~~~~----~~G~~V~~~~ 78 (212)
T TIGR03338 33 AKLNESDIAARLGV----SRGPVREAFRALEEAGLVRNEK----NRGVFVREIS 78 (212)
T ss_pred CEecHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEec----CCCeEEecCC
Confidence 46788999999999 6889999999999999999873 4445555443
No 428
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=55.95 E-value=20 Score=32.52 Aligned_cols=84 Identities=25% Similarity=0.281 Sum_probs=60.8
Q ss_pred CCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC---cccEeeHhhhh
Q 043063 159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP---AADAIFMKWVL 213 (301)
Q Consensus 159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p---~~D~v~~~~vl 213 (301)
..+.+|||.=+|.| +-+|+ |..++-.++ .++|+.+.||..+-.+ .+|=|+|...-
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 34789999988875 23577 766554432 3679999999987543 47988877643
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCC
Q 043063 214 TTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDD 248 (301)
Q Consensus 214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~ 248 (301)
.+.++|-.+.+.+++||.+...+.+.++.
T Consensus 267 ------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 267 ------SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred ------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 23577888888888999999988877655
No 429
>KOG2165 consensus Anaphase-promoting complex (APC), subunit 2 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=55.53 E-value=14 Score=36.39 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE 69 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 69 (301)
..-|.++|++.+|+ ++.+++|.|.-....|++.+.+..-+.+.|+.++
T Consensus 615 ~twt~eelse~l~i----p~~~lrrrL~fWi~~GvL~e~~~~s~tgt~T~iE 662 (765)
T KOG2165|consen 615 NTWTLEELSESLGI----PVPALRRRLSFWIQKGVLREEPIISDTGTLTVIE 662 (765)
T ss_pred ccccHHHHHHHhCC----CHHHHHHHHHHHHHcCeeecCCCCCCCceeeecc
Confidence 56899999999999 7899999999999999999982110136676666
No 430
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=55.08 E-value=21 Score=30.14 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK 72 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~ 72 (301)
.+++-.+||+++|+ ....++.-|..|.+.|+|+..+ +..+..++++.
T Consensus 38 ~~l~e~~La~~~gv----SrtPVReAL~rL~~eGlv~~~p----~rG~~V~~~~~ 84 (230)
T COG1802 38 ERLSEEELAEELGV----SRTPVREALRRLEAEGLVEIEP----NRGAFVAPLSL 84 (230)
T ss_pred CCccHHHHHHHhCC----CCccHHHHHHHHHHCCCeEecC----CCCCeeCCCCH
Confidence 57899999999999 6889999999999999999983 55666666663
No 431
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=54.42 E-value=19 Score=31.21 Aligned_cols=49 Identities=14% Similarity=0.246 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK 72 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~ 72 (301)
++.--+|||+.++- ||.-++-.+..|.++|+++-.+ |..|.|.-|..+.
T Consensus 24 r~IKgeeIA~~l~r----npGTVRNqmq~LkaLgLVegvp--GPkGGY~PT~kAY 72 (294)
T COG2524 24 RPIKGEEIAEVLNR----NPGTVRNQMQSLKALGLVEGVP--GPKGGYKPTSKAY 72 (294)
T ss_pred CCcchHHHHHHHcc----CcchHHHHHHHHHhcCcccccc--CCCCCccccHHHH
Confidence 68888999999999 9999999999999999999763 2457899887763
No 432
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=54.34 E-value=16 Score=29.92 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=36.5
Q ss_pred cccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 11 KKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 11 lf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
+.+.|.. +..|+-+||+++|+ +..-+.|-|..|...|.|...
T Consensus 18 ~~~~l~~~~~~~a~~i~~~l~~----~k~~vNr~LY~l~~~~~v~~~ 60 (183)
T PHA03103 18 EVKNLGLGEGITAIEISRKLNI----EKSEVNKQLYKLQREGMVYMS 60 (183)
T ss_pred HHHHhccCCCccHHHHHHHhCC----CHHHHHHHHHHHHhcCceecC
Confidence 4566765 78899999999999 788899999999999999766
No 433
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=54.01 E-value=15 Score=30.01 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=30.2
Q ss_pred CCHHHHHHHh-CCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 20 LSASQILTRI-LPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 20 ~t~~ela~~~-~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.|-.+|+..+ |+ .+.-+++.|+.|+..|+|.+.
T Consensus 71 pSN~~La~r~~G~----s~~tlrR~l~~LveaGLI~rr 104 (177)
T PF03428_consen 71 PSNAQLAERLNGM----SERTLRRHLARLVEAGLIVRR 104 (177)
T ss_pred cCHHHHHHHHcCC----CHHHHHHHHHHHHHCCCeeec
Confidence 3678999999 99 799999999999999999985
No 434
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=53.57 E-value=4.9 Score=33.08 Aligned_cols=43 Identities=2% Similarity=-0.086 Sum_probs=37.5
Q ss_pred ccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 10 GKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 10 glf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
-|.+.|.. +..++.+||+.+++ .+.-++|=|..|...|++.+.
T Consensus 11 ~Il~~l~~~~~~~~~~La~~~~v----S~~TiRRDl~~L~~~g~~~r~ 54 (185)
T PRK04424 11 ALQELIEENPFITDEELAEKFGV----SIQTIRLDRMELGIPELRERI 54 (185)
T ss_pred HHHHHHHHCCCEEHHHHHHHHCc----CHHHHHHHHHHHhcchHHHHH
Confidence 35666764 78999999999999 688999999999999999877
No 435
>PRK13239 alkylmercury lyase; Provisional
Probab=53.41 E-value=8.8 Score=32.12 Aligned_cols=43 Identities=14% Similarity=0.032 Sum_probs=31.3
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
+-.-|+..|+. .|.|.++||+.+|. +...++..|+.| ..++.+
T Consensus 23 ~~~~llr~la~G~pvt~~~lA~~~~~----~~~~v~~~L~~l---~~~~~d 66 (206)
T PRK13239 23 LLVPLLRLLAKGRPVSVTTLAAALGW----PVEEVEAVLEAM---PDTEYD 66 (206)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCC----CHHHHHHHHHhC---CCeEEC
Confidence 44557778876 69999999999999 676666666664 444444
No 436
>PF11972 HTH_13: HTH DNA binding domain; InterPro: IPR021068 The proteins in this entry have not been characterised. They contain a C-terminal helix-turn-helix DNA binding domain.
Probab=52.88 E-value=12 Score=24.00 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=31.4
Q ss_pred cccccCCCC-CCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEec
Q 043063 11 KKGRLANTP-LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSL 67 (301)
Q Consensus 11 lf~~L~~g~-~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~ 67 (301)
+.|.|-..| .|+.-+++++|+ .+....++++- +|+-+.. +.++|+.
T Consensus 4 Lidll~~~P~Vsa~mva~~L~v----T~~~A~~li~e---Lg~rEiT----Gr~R~Ra 50 (54)
T PF11972_consen 4 LIDLLLSRPLVSAPMVAKELGV----TPQAAQRLIAE---LGLREIT----GRGRYRA 50 (54)
T ss_pred HHHHHHhCccccHHHHHHHhCC----CHHHHHHHHHH---hhceeec----CCcccch
Confidence 456666556 599999999999 68788887654 5553333 3566764
No 437
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=52.77 E-value=8.8 Score=29.25 Aligned_cols=62 Identities=11% Similarity=0.221 Sum_probs=44.6
Q ss_pred ccccccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063 6 CRDGGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI 70 (301)
Q Consensus 6 a~~lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 70 (301)
+.|.-|.+.|= .||.|+.||-+.+.....-.+.-+.-+|.-|+.-|+|...+ .++.|.-+|+
T Consensus 6 ~aE~eVM~ilW~~~~~t~~eI~~~l~~~~ews~sTV~TLl~RL~KKg~l~~~k---dgr~~~y~pL 68 (123)
T COG3682 6 AAEWEVMEILWSRGPATVREIIEELPADREWSYSTVKTLLNRLVKKGLLTRKK---DGRAFRYSPL 68 (123)
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHhhcccccHHHHHHHHHHHHhccchhhhh---cCCeeeeecc
Confidence 34555666664 48999999988887511113457889999999999999886 4566777764
No 438
>KOG2730 consensus Methylase [General function prediction only]
Probab=52.73 E-value=5.8 Score=33.55 Aligned_cols=28 Identities=32% Similarity=0.436 Sum_probs=21.3
Q ss_pred eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc
Q 043063 173 INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS 200 (301)
Q Consensus 173 ~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~ 200 (301)
+.+|. |.-++.|+. .+||+|++||+++.
T Consensus 120 isIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~ 155 (263)
T KOG2730|consen 120 IAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDL 155 (263)
T ss_pred EEEeccHHHHHHHhccceeecCCceeEEEechHHHH
Confidence 45687 776776664 37999999999865
No 439
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=51.92 E-value=11 Score=29.68 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=40.4
Q ss_pred cccccccccccCC--CCCCHHHHHHHhCCCCCC-CcccHHHHHHHHhcCcceeccc
Q 043063 5 ECRDGGKKGRLAN--TPLSASQILTRILPSGGG-DAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 5 ~a~~lglf~~L~~--g~~t~~ela~~~~~~~~~-~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
|--++.|++.|.+ ++.|+++|-..+.-..|. ...-+.|.|+.|...|+|.+-.
T Consensus 20 T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~~~ 75 (145)
T COG0735 20 TPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHRLE 75 (145)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEEEE
Confidence 4456778888863 679999998887642221 3567899999999999999884
No 440
>PF03297 Ribosomal_S25: S25 ribosomal protein; InterPro: IPR004977 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S25 ribosomal protein is a component of the 40S ribosomal subunit.; PDB: 2XZM_8 2XZN_8 3O30_Q 3U5G_Z 3IZB_V 3U5C_Z 3O2Z_Q 3IZ6_V.
Probab=51.79 E-value=17 Score=26.91 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.-+|...||+++++ +-...++.|+.|.+.|++...
T Consensus 58 K~ITp~~lserlkI----~~SlAr~~Lr~L~~kG~Ik~V 92 (105)
T PF03297_consen 58 KLITPSVLSERLKI----NGSLARKALRELESKGLIKPV 92 (105)
T ss_dssp SCECHHHHHHHHCC----SCHHHHHHHHHHHHCCSSEEE
T ss_pred cEeeHHHHHHhHhh----HHHHHHHHHHHHHHCCCEEEE
Confidence 45799999999999 788999999999999999866
No 441
>COG2186 FadR Transcriptional regulators [Transcription]
Probab=51.35 E-value=25 Score=30.20 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=35.6
Q ss_pred CHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063 21 SASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT 68 (301)
Q Consensus 21 t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 68 (301)
+-.+|++.+|+ ....++.-|+.|.+.|+|+..+ +.|.|..+
T Consensus 36 ~EreLae~fgV----SR~~vREAl~~L~a~Glve~r~---G~Gt~V~~ 76 (241)
T COG2186 36 SERELAERFGV----SRTVVREALKRLEAKGLVEIRQ---GSGTFVRP 76 (241)
T ss_pred CHHHHHHHHCC----CcHHHHHHHHHHHHCCCeeecC---CCceEecC
Confidence 57889999999 5779999999999999999875 46788865
No 442
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=51.34 E-value=39 Score=34.04 Aligned_cols=56 Identities=7% Similarity=-0.032 Sum_probs=31.6
Q ss_pred CceeEEeCCCCcc-CC----cccEeeHhhhhc-cCCh-HHHHHHHHHHHHhCC---CCCEEEEecc
Q 043063 188 PGVTHIGGDMFKS-IP----AADAIFMKWVLT-TWTD-DECKLIMENCYKAIP---AGGKLIACEP 243 (301)
Q Consensus 188 ~ri~~~~gd~~~~-~p----~~D~v~~~~vlh-~~~d-~~~~~iL~~~~~aL~---pgg~lli~e~ 243 (301)
++|+|..+|+.+. .+ ..|+|++.-=.. .+.+ .+...+-+.+.+.|+ +|+++.++-.
T Consensus 283 ~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 283 ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 5789999998764 22 148887763322 1222 334444444444443 7877666554
No 443
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=50.75 E-value=30 Score=29.02 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
..++..+||+.+|+ ....++.-|+.|...|+|+..+
T Consensus 33 ~~L~e~~La~~lgV----SRtpVREAL~~L~~eGLV~~~~ 68 (221)
T PRK11414 33 ARLITKNLAEQLGM----SITPVREALLRLVSVNALSVAP 68 (221)
T ss_pred CccCHHHHHHHHCC----CchhHHHHHHHHHHCCCEEecC
Confidence 45788899999999 6889999999999999999773
No 444
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=50.63 E-value=7.5 Score=24.77 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=23.2
Q ss_pred ccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHH
Q 043063 8 DGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILR 45 (301)
Q Consensus 8 ~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~ 45 (301)
++.|.+.+..|+ +..+||+..|+ ...-+..+++
T Consensus 12 K~~iI~~~e~g~-s~~~ia~~fgv----~~sTv~~I~K 44 (53)
T PF04218_consen 12 KLEIIKRLEEGE-SKRDIAREFGV----SRSTVSTILK 44 (53)
T ss_dssp HHHHHHHHHCTT--HHHHHHHHT------CCHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHhCC----CHHHHHHHHH
Confidence 456777777777 99999999999 5666766664
No 445
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=50.29 E-value=15 Score=26.76 Aligned_cols=45 Identities=11% Similarity=0.167 Sum_probs=35.4
Q ss_pred ccccccccCC-----CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 8 DGGKKGRLAN-----TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 8 ~lglf~~L~~-----g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.-.|++.|.. ..+++.+|++.+++ ++..++.-|+.|...|+|-..
T Consensus 49 ~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~----~~~~v~~al~~L~~eG~IYsT 98 (102)
T PF08784_consen 49 QDKVLNFIKQQPNSEEGVHVDEIAQQLGM----SENEVRKALDFLSNEGHIYST 98 (102)
T ss_dssp HHHHHHHHHC----TTTEEHHHHHHHSTS-----HHHHHHHHHHHHHTTSEEES
T ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHhCc----CHHHHHHHHHHHHhCCeEecc
Confidence 3345666643 35789999999999 899999999999999998654
No 446
>PF03551 PadR: Transcriptional regulator PadR-like family; InterPro: IPR005149 Phenolic acids, also called substituted hydroxycinnamic acids, are abundant in the plant kingdom because they are involved in the structure of plant cell walls and are present in some vacuoles. In plant-soil ecosystems they are released as free acids by hemicellulases produced by several fungi and bacteria. Of these weak acids, the most abundant are p-coumaric, ferulic, and caffeic acids, considered to be natural toxins that inhibit the growth of microorganisms, especially at low pHs. In spite of this chemical stress, some bacteria can use phenolic acids as a sole source of carbon. For other microorganisms, these compounds induce a specific response by which the organism adapts to its environment. The ubiquitous lactic acid bacterium Lactobacillus plantarum exhibits an inducible phenolic acid decarboxylase (PAD) activity which converts these substrates into less-toxic vinyl phenol derivatives. PadR acts as a repressor of padA gene expression in the phenolic acid stress response [].; PDB: 1XMA_B 2ESH_A 2DQL_B 3L9F_C 3ELK_B 4EJO_B 3L7W_A 3HHH_A 1YG2_A 3F8B_A ....
Probab=50.09 E-value=4.2 Score=27.81 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=39.4
Q ss_pred cCCCCCCHHHHHHHhCCCCC----CCcccHHHHHHHHhcCcceecccccc----CCCeEecChhchh
Q 043063 15 LANTPLSASQILTRILPSGG----GDAENLQRILRLLTNYGVFSEHREFG----GERKYSLTEIGKS 73 (301)
Q Consensus 15 L~~g~~t~~ela~~~~~~~~----~~~~~l~~lL~~L~~~g~l~~~~~~~----~~~~y~~t~~s~~ 73 (301)
|..+|.+--+|.+.+.-..+ -++..+...|+.|...|+|+...... ..-.|++|+.++.
T Consensus 5 L~~~~~~Gyei~~~l~~~~~~~~~i~~g~lY~~L~~Le~~gli~~~~~~~~~~~~rk~Y~iT~~G~~ 71 (75)
T PF03551_consen 5 LSEGPMHGYEIKQELEERTGGFWKISPGSLYPALKRLEEEGLIESRWEEEGNGRPRKYYRITEKGRE 71 (75)
T ss_dssp HHHS-EEHHHHHHHHHHCSTTTEETTHHHHHHHHHHHHHTTSEEEEEEEETTSSEEEEEEESHHHHH
T ss_pred hccCCCcHHHHHHHHHHHhCCCcccChhHHHHHHHHHHhCCCEEEeeeccCCCCCCEEEEECHHHHH
Confidence 44467777777766543100 15679999999999999999774321 1125999998864
No 447
>PF09202 Rio2_N: Rio2, N-terminal; InterPro: IPR015285 This N-terminal domain is found in RIO2 kinases, and is structurally homologous to the winged helix (wHTH) domain. It adopts a structure consisting of four alpha helices followed by two beta strands and a fifth alpha helix. The domain confers DNA binding properties to the protein, as per other winged helix domains []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A.
Probab=49.66 E-value=24 Score=24.78 Aligned_cols=48 Identities=17% Similarity=0.113 Sum_probs=35.8
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK 72 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~ 72 (301)
-...+.|++.+|+ ++..+...|..|...+++..... .=+.|++|-.+-
T Consensus 24 ~VP~~~I~~~s~l----~~~~~~~~L~~L~~~kLv~~~~~--~Y~GYrLT~~GY 71 (82)
T PF09202_consen 24 WVPLELIEKISGL----SEGEVEKRLKRLVKLKLVSRRNK--PYDGYRLTFLGY 71 (82)
T ss_dssp SEEHHHHHHHHT------HHHHHHHHHHHHHTTSEEEE-S--SS-EEEE-HHHH
T ss_pred cCCHHHHHHHhCc----CHHHHHHHHHHHHhcCCccccCC--CcceEEEeecch
Confidence 3568999999999 78899999999999999999721 125699998773
No 448
>PRK00135 scpB segregation and condensation protein B; Reviewed
Probab=49.30 E-value=32 Score=28.39 Aligned_cols=39 Identities=18% Similarity=0.159 Sum_probs=32.2
Q ss_pred cccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 11 KKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 11 lf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
++..++ .+|+|..+|++..|+ +. ..+++.|...|++.+.
T Consensus 95 tLaiIay~qPiTr~eI~~irGv----~~---~~ii~~L~~~gLI~e~ 134 (188)
T PRK00135 95 VLAIIAYKQPITRIEIDEIRGV----NS---DGALQTLLAKGLIKEV 134 (188)
T ss_pred HHHHHHHcCCcCHHHHHHHHCC----CH---HHHHHHHHHCCCeEEc
Confidence 344454 489999999999999 44 8899999999999864
No 449
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=49.23 E-value=43 Score=26.63 Aligned_cols=65 Identities=20% Similarity=0.329 Sum_probs=37.8
Q ss_pred cceEEeecCCc------------e---eeeehhHHHhhCCCCCceeEEeCCCCcc-CCcccEeeHhhhhccCChHHHHHH
Q 043063 161 VKRLVDVGGSA------------G---INFDLPEVVAEAPSIPGVTHIGGDMFKS-IPAADAIFMKWVLTTWTDDECKLI 224 (301)
Q Consensus 161 ~~~vlDvGgG~------------g---~~~Dlp~v~~~a~~~~ri~~~~gd~~~~-~p~~D~v~~~~vlh~~~d~~~~~i 224 (301)
.+++|=||||. | ++++ |+..+...+.+++++....+.+. +..+|++++.- +|++.-..
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs-p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT-----~d~e~N~~ 86 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS-PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAAT-----NQHAVNMM 86 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc-CccCHHHHhccCcEEEecccChhcCCCceEEEECC-----CCHHHHHH
Confidence 47899999998 1 3443 44444333345677766555433 44568777642 55555555
Q ss_pred HHHHHHh
Q 043063 225 MENCYKA 231 (301)
Q Consensus 225 L~~~~~a 231 (301)
+....+.
T Consensus 87 i~~~a~~ 93 (157)
T PRK06719 87 VKQAAHD 93 (157)
T ss_pred HHHHHHH
Confidence 5555554
No 450
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=49.22 E-value=19 Score=33.44 Aligned_cols=84 Identities=19% Similarity=0.212 Sum_probs=57.4
Q ss_pred cceEEeecCCc--------------eeeeeh-hHHHhhCCC--------CCceeEEeCCCCccCC-------cccEeeHh
Q 043063 161 VKRLVDVGGSA--------------GINFDL-PEVVAEAPS--------IPGVTHIGGDMFKSIP-------AADAIFMK 210 (301)
Q Consensus 161 ~~~vlDvGgG~--------------g~~~Dl-p~v~~~a~~--------~~ri~~~~gd~~~~~p-------~~D~v~~~ 210 (301)
..+|||+=|=| .+.+|. ...++-|++ .+++.|+.+|.|+.+. ..|+|++=
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 67888874333 367898 556666554 3689999999997532 24888862
Q ss_pred --------hhhccCC-hHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 211 --------WVLTTWT-DDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 211 --------~vlh~~~-d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
... |+ ..+-.+++..+.+.|+|||.++++.+...
T Consensus 298 PPsF~r~k~~~--~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 298 PPSFARSKKQE--FSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred CcccccCcccc--hhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 111 22 22345889999999999999998887544
No 451
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=48.98 E-value=18 Score=23.74 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=21.7
Q ss_pred CcccHHHHHHHHhcCcceeccccccCCCeEec
Q 043063 36 DAENLQRILRLLTNYGVFSEHREFGGERKYSL 67 (301)
Q Consensus 36 ~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~ 67 (301)
...-|+.+|..+++.|.|+.. +|.|++
T Consensus 34 s~~eL~~fL~~lv~e~~L~~~-----~G~YkL 60 (60)
T PF08672_consen 34 SLEELQEFLDRLVEEGKLECS-----GGSYKL 60 (60)
T ss_dssp -HHHHHHHHHHHHHTTSEE-------TTEEEE
T ss_pred CHHHHHHHHHHHHHCCcEEec-----CCEEeC
Confidence 467899999999999999998 789985
No 452
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=48.61 E-value=20 Score=34.14 Aligned_cols=87 Identities=18% Similarity=0.276 Sum_probs=55.4
Q ss_pred CCCcceEEeecCCce----eeeehhH----HHhhCCC------CCc-eeEEeCCCCcc---CCc-ccEeeHhhhhccCCh
Q 043063 158 FKGVKRLVDVGGSAG----INFDLPE----VVAEAPS------IPG-VTHIGGDMFKS---IPA-ADAIFMKWVLTTWTD 218 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----~~~Dlp~----v~~~a~~------~~r-i~~~~gd~~~~---~p~-~D~v~~~~vlh~~~d 218 (301)
+...+.|+|..+|.| ...|.|- |+..... .+| .--+-+|.-+. .|. .|++...+++-.+.+
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~ 442 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKD 442 (506)
T ss_pred ccceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcc
Confidence 556789999999996 1112210 1111110 122 11123455554 455 599999999987764
Q ss_pred -HHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063 219 -DECKLIMENCYKAIPAGGKLIACEPV 244 (301)
Q Consensus 219 -~~~~~iL~~~~~aL~pgg~lli~e~~ 244 (301)
-+...||-.+-+.|+|+|.++|-|.+
T Consensus 443 rC~~~~illEmDRILRP~G~~iiRD~~ 469 (506)
T PF03141_consen 443 RCEMEDILLEMDRILRPGGWVIIRDTV 469 (506)
T ss_pred cccHHHHHHHhHhhcCCCceEEEeccH
Confidence 34568899999999999999998763
No 453
>PF13744 HTH_37: Helix-turn-helix domain; PDB: 2A6C_B 2O38_A.
Probab=48.46 E-value=8.6 Score=26.76 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=22.1
Q ss_pred cccCCCCCCHHHHHHHhCCCCC---------CCcccHHHHHHHHhcCcc
Q 043063 13 GRLANTPLSASQILTRILPSGG---------GDAENLQRILRLLTNYGV 52 (301)
Q Consensus 13 ~~L~~g~~t~~ela~~~~~~~~---------~~~~~l~~lL~~L~~~g~ 52 (301)
+.+.....|-.++|+.+|+++| .+.-.+..|++++.++|.
T Consensus 25 ~~~~~~~ltQ~e~A~~lgisq~~vS~l~~g~~~~~sl~~L~~~l~aLG~ 73 (80)
T PF13744_consen 25 ELREERGLTQAELAERLGISQPRVSRLENGKIDDFSLDTLLRYLEALGG 73 (80)
T ss_dssp HHHHCCT--HHHHHHHHTS-HHHHHHHHTT-GCC--HHHHHHHHHHTTE
T ss_pred HHHHHcCCCHHHHHHHHCCChhHHHHHHcCcccCCCHHHHHHHHHHcCC
Confidence 3444567899999999999533 011235556666666654
No 454
>smart00342 HTH_ARAC helix_turn_helix, arabinose operon control protein.
Probab=48.31 E-value=22 Score=23.92 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=23.5
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCc
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYG 51 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g 51 (301)
+.|+++||+.+|+ ++..+.++++......
T Consensus 1 ~~~~~~la~~~~~----s~~~l~~~f~~~~~~s 29 (84)
T smart00342 1 PLTLEDLAEALGM----SPRHLQRLFKKETGTT 29 (84)
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHHHHhCcC
Confidence 4689999999999 7888888888765444
No 455
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=48.04 E-value=42 Score=28.46 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=33.4
Q ss_pred CcceEEeecCCce---------------eeeeh-hHHHhhCC-------CCCceeEEeCCCCcc-CCc--ccEeeHhh
Q 043063 160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAP-------SIPGVTHIGGDMFKS-IPA--ADAIFMKW 211 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~-------~~~ri~~~~gd~~~~-~p~--~D~v~~~~ 211 (301)
...++.||||-++ +.-|. |...+.|. -.+||+...+|-+.. .++ .|++++..
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAG 93 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAG 93 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeC
Confidence 3445999999993 34455 43333332 248999999999877 344 37666544
No 456
>PRK00082 hrcA heat-inducible transcription repressor; Provisional
Probab=47.74 E-value=20 Score=32.57 Aligned_cols=51 Identities=14% Similarity=0.235 Sum_probs=38.8
Q ss_pred ccCC-CCCCHHHHHHH--hCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 14 RLAN-TPLSASQILTR--ILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 14 ~L~~-g~~t~~ela~~--~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
++.. +|.+..+||+. +++ .+.-+++-|..|..+|++.+.. ....+--|..+
T Consensus 19 yi~~~~pv~s~~l~~~~~l~~----S~aTIR~dm~~Le~~G~l~~~h---~sagrIPT~kG 72 (339)
T PRK00082 19 YIATGEPVGSKTLSKRYGLGV----SSATIRNDMADLEELGLLEKPH---TSSGRIPTDKG 72 (339)
T ss_pred HHhcCCCcCHHHHHHHhCCCC----ChHHHHHHHHHHHhCCCcCCCc---CCCCCCcCHHH
Confidence 4543 79999999977 888 5889999999999999999874 22334444444
No 457
>COG4901 Ribosomal protein S25 [Translation, ribosomal structure and biogenesis]
Probab=47.69 E-value=23 Score=25.95 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.-+|...||.+.|+ +-...+..||.|...|++...
T Consensus 58 r~VTpy~la~r~gI----~~SvAr~vLR~LeeeGvv~lv 92 (107)
T COG4901 58 RVVTPYVLASRYGI----NGSVARIVLRHLEEEGVVQLV 92 (107)
T ss_pred eeecHHHHHHHhcc----chHHHHHHHHHHHhCCceeee
Confidence 45799999999999 788999999999999999866
No 458
>PF13551 HTH_29: Winged helix-turn helix
Probab=47.49 E-value=13 Score=27.16 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=30.4
Q ss_pred ccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcc
Q 043063 12 KGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGV 52 (301)
Q Consensus 12 f~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~ 52 (301)
+..+.+|-.|..++|+.+|+ +++-+.+|++....-|+
T Consensus 5 l~l~~~g~~~~~~ia~~lg~----s~~Tv~r~~~~~~~~G~ 41 (112)
T PF13551_consen 5 LLLLAEGVSTIAEIARRLGI----SRRTVYRWLKRYREGGI 41 (112)
T ss_pred HHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHcccH
Confidence 34455554479999999999 89999999999998883
No 459
>PF07574 SMC_Nse1: Nse1 non-SMC component of SMC5-6 complex; InterPro: IPR011513 Saccharomyces cerevisiae Nse1 (Q07913 from SWISSPROT) forms part of a complex with SMC5-SMC6. This non-structural maintenance of chromosomes (SMC) complex plays an essential role in genomic stability, being involved in DNA repair and DNA metabolism [, ]. It is conserved in eukaryotes from yeast to human.; PDB: 3NW0_A.
Probab=47.34 E-value=13 Score=30.94 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=24.7
Q ss_pred HHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 24 QILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 24 ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
+.++..++ .....+.+|.-|+..|+|.+.+ +|.|.+++-+
T Consensus 157 ~~~~~~~L----~~~eae~lL~~lv~~gWl~~s~----~G~y~L~~Ra 196 (200)
T PF07574_consen 157 QLAQDKGL----SKSEAESLLDRLVEDGWLYRSR----EGFYSLGPRA 196 (200)
T ss_dssp --------------HHHHHHHHHHHHTTSE-EEE----TTEEEE-HHH
T ss_pred cccccccc----hHHHHHHHHHHHHHCCCceeCC----CCEEEEChHH
Confidence 34444445 5678899999999999998873 8999999854
No 460
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=47.17 E-value=6.4 Score=29.48 Aligned_cols=51 Identities=12% Similarity=0.075 Sum_probs=38.3
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
.|+.|.+.|=+ |+.|+.||.+.+.-+.+-.+.-+..+|+-|+.-|+|...+
T Consensus 4 ~E~~IM~~lW~~~~~t~~eI~~~l~~~~~~~~sTv~t~L~rL~~Kg~l~~~~ 55 (115)
T PF03965_consen 4 LELEIMEILWESGEATVREIHEALPEERSWAYSTVQTLLNRLVEKGFLTREK 55 (115)
T ss_dssp HHHHHHHHHHHHSSEEHHHHHHHHCTTSS--HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhccccchhHHHHHHHHHHhCCceeEee
Confidence 45556666643 7799999999987521114668889999999999999985
No 461
>COG5340 Predicted transcriptional regulator [Transcription]
Probab=47.16 E-value=12 Score=31.63 Aligned_cols=46 Identities=9% Similarity=0.156 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
+-+|+.|+|+..++ ++.-++.++--|...|+|++- .+|.|..-++.
T Consensus 29 kiiTirdvae~~ev----~~n~lr~lasrLekkG~LeRi----~rG~YlI~~lp 74 (269)
T COG5340 29 KIITIRDVAETLEV----APNTLRELASRLEKKGWLERI----LRGRYLIIPLP 74 (269)
T ss_pred ceEEeHHhhhhccC----CHHHHHHHHhhhhhcchhhhh----cCccEEEeecC
Confidence 45799999999999 899999999999999999999 48999987754
No 462
>PF04760 IF2_N: Translation initiation factor IF-2, N-terminal region; InterPro: IPR006847 This region is found in the N-terminal half of translation initiation factor IF-2. It is found in two copies in IF-2 alpha isoforms, and in only one copy in the N-terminally truncated beta and gamma isoforms []. Its function is unknown.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1ND9_A.
Probab=46.77 E-value=9.1 Score=24.32 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=21.1
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhc-Ccceecc
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTN-YGVFSEH 56 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~-~g~l~~~ 56 (301)
+.++.|||+.+|+ ....+++.|.. +|+....
T Consensus 3 ~i~V~elAk~l~v-------~~~~ii~~l~~~~Gi~~~~ 34 (54)
T PF04760_consen 3 KIRVSELAKELGV-------PSKEIIKKLFKELGIMVKS 34 (54)
T ss_dssp EE-TTHHHHHHSS-------SHHHHHHHH-HHHTS---S
T ss_pred ceEHHHHHHHHCc-------CHHHHHHHHHHhCCcCcCC
Confidence 5789999999999 45778888844 8888433
No 463
>PF13542 HTH_Tnp_ISL3: Helix-turn-helix domain of transposase family ISL3
Probab=46.38 E-value=16 Score=22.69 Aligned_cols=34 Identities=12% Similarity=0.001 Sum_probs=25.6
Q ss_pred cccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHH
Q 043063 9 GGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLL 47 (301)
Q Consensus 9 lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L 47 (301)
.-|.+.|... .|..++|+.+|+ +..-+.++++..
T Consensus 18 ~~i~~~~~~~-~s~~~vA~~~~v----s~~TV~ri~~~~ 51 (52)
T PF13542_consen 18 QYILKLLRES-RSFKDVARELGV----SWSTVRRIFDRY 51 (52)
T ss_pred HHHHHHHhhc-CCHHHHHHHHCC----CHHHHHHHHHhh
Confidence 3455566544 699999999999 688888887653
No 464
>PF09114 MotA_activ: Transcription factor MotA, activation domain; InterPro: IPR015198 Transcription factor MotA is required for the activation of middle promoters in Bacteriophage T4, in addition to phage T4 co-activator AsiA, and sigma-70-containing Escherichia coli RNA polymerase. Phage T4 middle promoters have the sigma70 -10 DNA element, but not the -35 element; instead, they have a MotA box at -30 to which the transcription factor MotA binds []. MotA and AsiA interact with the C-terminal of sigma70 (region 4), which normally binds the -35 element and the beta-flap, thereby diverting sigma70 away from host promoters that require -35 element-binding to phage T4 middle promoters. Transcription factor MotA has two domains: an N-terminal domain required for binding to sigma70, and a C-terminal domain required for binding to the -30 MotA box element in the phage T4 middle promoter. This entry represents the N-terminal (activation) domain of MotA factors that binds sigma70. The N-terminal domain adopts an almost completely alpha-helical topology, with five alpha-helices and a short, two-stranded, beta-ribbon. Four alpha helices (alpha1, alpha3, alpha4 and alpha5) are amphipathic and pack their hydrophobic surfaces around the central helix alpha2 [].; PDB: 1BJA_B 1I1S_A.
Probab=46.35 E-value=37 Score=24.25 Aligned_cols=49 Identities=14% Similarity=0.261 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHh--CCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063 18 TPLSASQILTRI--LPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV 75 (301)
Q Consensus 18 g~~t~~ela~~~--~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 75 (301)
.-.|.+++++.+ .. +...+.+=...|..-|++++. ++.|-.|..+..+.
T Consensus 29 ~Fit~~ev~e~l~~~~----~~~~V~SNIGvLIKkglIEKS-----GDGlv~T~~g~~Ii 79 (96)
T PF09114_consen 29 NFITASEVREALATEM----NKASVNSNIGVLIKKGLIEKS-----GDGLVITEEGMDII 79 (96)
T ss_dssp TTB-HHHHHH-T-TTS-----HHHHHHHHHHHHHTTSEEEE-----TTEEEE-HHHHHHH
T ss_pred ccCCHHHHHHHHHHHh----hhhHHHHhHHHHHHcCccccc-----CCceEEechHHHHH
Confidence 456999999977 34 566788888899999999998 55699999887654
No 465
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=46.03 E-value=23 Score=31.87 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.++|-+|||+++|+ ....+.|+|..+...|+++..
T Consensus 25 ~gltQ~eIA~~Lgi----SR~~v~rlL~~Ar~~GiV~I~ 59 (321)
T COG2390 25 EGLTQSEIAERLGI----SRATVSRLLAKAREEGIVKIS 59 (321)
T ss_pred cCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCeEEEE
Confidence 57899999999999 688999999999999999976
No 466
>PRK09333 30S ribosomal protein S19e; Provisional
Probab=44.71 E-value=44 Score=26.42 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHhCCC-----CCCCc-----ccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhc
Q 043063 17 NTPLSASQILTRILPS-----GGGDA-----ENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVT 76 (301)
Q Consensus 17 ~g~~t~~ela~~~~~~-----~~~~~-----~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~ 76 (301)
.||..+..|+...|-. .|++. ..++..|+.|..+|+++.+ . +.=.+|+.++.+++
T Consensus 65 ~gpvGV~~L~~~yGg~k~~G~~P~h~~~~sg~iiR~~LqqLE~~glVek~----~-~GR~lT~~G~~~LD 129 (150)
T PRK09333 65 DGPVGVERLRTAYGGRKNRGVRPEHFVKGSGSIIRKILQQLEKAGLVEKT----K-KGRVITPKGRSLLD 129 (150)
T ss_pred cCCccHHHHHHHHCCCcCCCCCCCccccCccHHHHHHHHHHHHCCCeeeC----C-CCCEeCHHHHHHHH
Confidence 4799999999999972 12111 2489999999999999988 2 33458887765543
No 467
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=44.69 E-value=20 Score=23.66 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=22.9
Q ss_pred cccccCCCCCCHHHHH----HHhCCCCCCCc----ccHHHHHHHHhcCccee
Q 043063 11 KKGRLANTPLSASQIL----TRILPSGGGDA----ENLQRILRLLTNYGVFS 54 (301)
Q Consensus 11 lf~~L~~g~~t~~ela----~~~~~~~~~~~----~~l~~lL~~L~~~g~l~ 54 (301)
|++.+ +|+.|+++|+ ++.+. ++ ..+..+|..|...|+++
T Consensus 22 Iw~~~-~g~~t~~ei~~~l~~~y~~----~~~~~~~dv~~fl~~L~~~glIe 68 (68)
T PF05402_consen 22 IWELL-DGPRTVEEIVDALAEEYDV----DPEEAEEDVEEFLEQLREKGLIE 68 (68)
T ss_dssp HHHH---SSS-HHHHHHHHHHHTT------HHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHc-cCCCCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHCcCcC
Confidence 45666 4788988866 45555 33 46778999999999874
No 468
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=44.61 E-value=14 Score=28.78 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=12.7
Q ss_pred CCCcceEEeecCCce
Q 043063 158 FKGVKRLVDVGGSAG 172 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g 172 (301)
-.+..+|+|+|||.|
T Consensus 23 ~~~~~~vvD~GsG~G 37 (141)
T PF13679_consen 23 SKRCITVVDLGSGKG 37 (141)
T ss_pred cCCCCEEEEeCCChh
Confidence 356789999999996
No 469
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=44.37 E-value=28 Score=26.60 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=23.4
Q ss_pred cccccCHHHHHHHHHhCCCCceEEEEcc
Q 043063 272 KGKHMTEQEFKQLGFSAGFPHLRLYRVL 299 (301)
Q Consensus 272 ~g~~rt~~e~~~~l~~aGf~~~~~~~~~ 299 (301)
.+..+|.+++.++++++||++.+.+.-+
T Consensus 92 ~S~Ky~~~~~~~l~~~aGl~~~~~w~d~ 119 (127)
T PF10017_consen 92 NSYKYSPEEFEALAEQAGLEVEKRWTDP 119 (127)
T ss_pred EeeCcCHHHHHHHHHHCCCeeEEEEECC
Confidence 3556899999999999999999887543
No 470
>COG1386 scpB Chromosome segregation and condensation protein B [DNA replication, recombination and repair]
Probab=43.99 E-value=43 Score=27.52 Aligned_cols=47 Identities=21% Similarity=0.240 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc---cCCCeEecChh
Q 043063 17 NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF---GGERKYSLTEI 70 (301)
Q Consensus 17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~---~~~~~y~~t~~ 70 (301)
..|+|..+|-+..|. ...+.++.|...|++.+.+.. |.+-.|..|+.
T Consensus 104 ~QPiTR~eI~~iRGv-------~~~~~i~~L~e~glI~~~g~~~~~Grp~ly~tT~~ 153 (184)
T COG1386 104 KQPVTRSEIEEIRGV-------AVSQVISTLLERGLIREVGRRDTPGRPYLYGTTEK 153 (184)
T ss_pred cCCccHHHHHHHhCc-------cHHHHHHHHHHCCCeEecCCCCCCCCceeeeccHH
Confidence 479999999999998 567799999999999988411 12235666664
No 471
>PF09106 SelB-wing_2: Elongation factor SelB, winged helix ; InterPro: IPR015190 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 2". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2V9V_A 1LVA_A 2PLY_A 2UWM_A.
Probab=43.88 E-value=37 Score=21.97 Aligned_cols=34 Identities=12% Similarity=0.201 Sum_probs=28.1
Q ss_pred CCCHHHHHHHh---CCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 19 PLSASQILTRI---LPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 19 ~~t~~ela~~~---~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.++.++|-.++ ++ ++.....+|+.|++.|.+...
T Consensus 17 G~~keeLrsrl~~~~l----~~k~~~~ll~~l~~~g~l~~~ 53 (59)
T PF09106_consen 17 GMPKEELRSRLFKPRL----PPKLFNALLEALVAEGRLKVE 53 (59)
T ss_dssp -EEHHHHHHHCST-TS-----HCCHHHHHHHHHHTTSEEEE
T ss_pred CcCHHHHHHHHhhccC----CHHHHHHHHHHHHHCCCeeeE
Confidence 45778888777 55 788999999999999999987
No 472
>PRK09464 pdhR transcriptional regulator PdhR; Reviewed
Probab=43.78 E-value=45 Score=28.61 Aligned_cols=43 Identities=12% Similarity=0.253 Sum_probs=35.2
Q ss_pred CC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063 19 PL-SASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT 68 (301)
Q Consensus 19 ~~-t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 68 (301)
.+ |-.+||+.+|+ ....++.-|+.|.+.|+|+..+ ..|.|...
T Consensus 33 ~LpsE~eLa~~lgV----SRtpVREAL~~L~~eGlv~~~~---~~G~~V~~ 76 (254)
T PRK09464 33 KLPPERELAKQFDV----SRPSLREAIQRLEAKGLLLRRQ---GGGTFVQS 76 (254)
T ss_pred cCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEec---CceeEEec
Confidence 45 78899999999 6889999999999999999774 34555544
No 473
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=43.58 E-value=28 Score=31.08 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEeccccCCC
Q 043063 219 DECKLIMENCYKAIPAGGKLIACEPVLPDD 248 (301)
Q Consensus 219 ~~~~~iL~~~~~aL~pgg~lli~e~~~~~~ 248 (301)
++..+.|+.+.+.|+|||+|.|+-+-.=|+
T Consensus 217 ~~L~~~L~~~~~~L~~gGrl~VISfHSLED 246 (305)
T TIGR00006 217 EELEEALQFAPNLLAPGGRLSIISFHSLED 246 (305)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence 346788999999999999999998755443
No 474
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=43.22 E-value=24 Score=31.35 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhCCCCCEEEEeccccCCC
Q 043063 220 ECKLIMENCYKAIPAGGKLIACEPVLPDD 248 (301)
Q Consensus 220 ~~~~iL~~~~~aL~pgg~lli~e~~~~~~ 248 (301)
+..+.|..+.++|+|||+|.|+-+..=++
T Consensus 222 ~L~~~L~~a~~~L~~gGRl~VIsFHSLED 250 (314)
T COG0275 222 ELEEALEAALDLLKPGGRLAVISFHSLED 250 (314)
T ss_pred HHHHHHHHHHHhhCCCcEEEEEEecchHH
Confidence 46688999999999999999998866544
No 475
>PHA02591 hypothetical protein; Provisional
Probab=43.16 E-value=13 Score=25.67 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=23.4
Q ss_pred ccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHH
Q 043063 12 KGRLANTPLSASQILTRILPSGGGDAENLQRILR 45 (301)
Q Consensus 12 f~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~ 45 (301)
-..|.+...|.++||+.+|+ +...+++.|+
T Consensus 52 A~eL~eqGlSqeqIA~~LGV----sqetVrKYL~ 81 (83)
T PHA02591 52 THELARKGFTVEKIASLLGV----SVRKVRRYLE 81 (83)
T ss_pred HHHHHHcCCCHHHHHHHhCC----CHHHHHHHHh
Confidence 34455567899999999999 6778887765
No 476
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=43.07 E-value=22 Score=24.87 Aligned_cols=42 Identities=7% Similarity=-0.002 Sum_probs=28.8
Q ss_pred cccccCCCCCCHHHHHHHh----CCCCCCCcccHHHHHHHHhcCccee
Q 043063 11 KKGRLANTPLSASQILTRI----LPSGGGDAENLQRILRLLTNYGVFS 54 (301)
Q Consensus 11 lf~~L~~g~~t~~ela~~~----~~~~~~~~~~l~~lL~~L~~~g~l~ 54 (301)
|++.|. |+.|+++|.+.+ +.+ ..-...+..+|..|...|++.
T Consensus 36 Iw~lld-g~~tv~eI~~~L~~~Y~~~-e~~~~dV~~fL~~L~~~gli~ 81 (81)
T TIGR03859 36 ILELCD-GKRSLAEIIQELAQRFPAA-EEIEDDVIAFLAVARAKHWLE 81 (81)
T ss_pred HHHHcc-CCCcHHHHHHHHHHHcCCh-hhHHHHHHHHHHHHHHCcCcC
Confidence 556665 688999988777 441 112356778888888888873
No 477
>PRK09990 DNA-binding transcriptional regulator GlcC; Provisional
Probab=43.05 E-value=42 Score=28.74 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=31.9
Q ss_pred CCC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 18 TPL-SASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 18 g~~-t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
..+ +-.+||+.+|+ ....++.=|+.|...|+|+..+
T Consensus 29 ~~LPsE~eLa~~~gV----SRtpVREAL~~L~~eGlV~~~~ 65 (251)
T PRK09990 29 QALPSERRLCEKLGF----SRSALREGLTVLRGRGIIETAQ 65 (251)
T ss_pred CcCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEeC
Confidence 457 77899999999 6889999999999999999874
No 478
>COG0640 ArsR Predicted transcriptional regulators [Transcription]
Probab=42.83 E-value=18 Score=25.43 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=40.4
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
.++.++..|.. .+.++.+|+..+++ ....+.+-|..|...|++....
T Consensus 26 ~r~~il~~l~~~~~~~~~~l~~~~~~----~~~~v~~hL~~L~~~glv~~~~ 73 (110)
T COG0640 26 TRLEILSLLAEGGELTVGELAEALGL----SQSTVSHHLKVLREAGLVELRR 73 (110)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHCC----ChhHHHHHHHHHHHCCCeEEEe
Confidence 45667777776 58899999999999 7889999999999999999874
No 479
>PF05344 DUF746: Domain of Unknown Function (DUF746); InterPro: IPR008008 This is a short conserved region found in some transposons.
Probab=42.70 E-value=21 Score=23.87 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHh
Q 043063 17 NTPLSASQILTRILPSGGGDAENLQRILRLLT 48 (301)
Q Consensus 17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~ 48 (301)
..+.|+.+.|+.+|+ ++..+.+|++.-.
T Consensus 11 s~~~s~~~Aa~~lG~----~~~~v~~wv~~fR 38 (65)
T PF05344_consen 11 SQQISVAQAADRLGT----DPGTVRRWVRMFR 38 (65)
T ss_pred cccccHHHHHHHHCc----CHHHHHHHHHHHH
Confidence 369999999999999 8988888887643
No 480
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.61 E-value=88 Score=23.68 Aligned_cols=66 Identities=26% Similarity=0.324 Sum_probs=42.0
Q ss_pred CcceEEeecCCc-----------e---eeeehhHHHhhCCCCCceeEEeCCCCcc-CC---cccEeeHhhhhccCChHHH
Q 043063 160 GVKRLVDVGGSA-----------G---INFDLPEVVAEAPSIPGVTHIGGDMFKS-IP---AADAIFMKWVLTTWTDDEC 221 (301)
Q Consensus 160 ~~~~vlDvGgG~-----------g---~~~Dlp~v~~~a~~~~ri~~~~gd~~~~-~p---~~D~v~~~~vlh~~~d~~~ 221 (301)
...+|++||-|. | +..|..+- .+ ...++++.-|++.| +. .+|+|..-+ |..+.
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~--~a--~~g~~~v~DDitnP~~~iY~~A~lIYSiR-----pppEl 83 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK--TA--PEGLRFVVDDITNPNISIYEGADLIYSIR-----PPPEL 83 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCCcEEEEecccc--cC--cccceEEEccCCCccHHHhhCccceeecC-----CCHHH
Confidence 456999999988 2 22343221 22 26899999999988 33 358776554 55556
Q ss_pred HHHHHHHHHhCCC
Q 043063 222 KLIMENCYKAIPA 234 (301)
Q Consensus 222 ~~iL~~~~~aL~p 234 (301)
..-+-+++++++-
T Consensus 84 ~~~ildva~aVga 96 (129)
T COG1255 84 QSAILDVAKAVGA 96 (129)
T ss_pred HHHHHHHHHhhCC
Confidence 6666667776543
No 481
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=42.11 E-value=30 Score=26.34 Aligned_cols=49 Identities=27% Similarity=0.247 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVT 76 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~ 76 (301)
.+.|+++||+.+|+ +++.+.++++....+.+-+.- ..+++......|..
T Consensus 24 ~~~sl~~lA~~~g~----S~~~l~r~Fk~~~G~s~~~~l------~~~Rl~~A~~~L~~ 72 (127)
T PRK11511 24 SPLSLEKVSERSGY----SKWHLQRMFKKETGHSLGQYI------RSRKMTEIAQKLKE 72 (127)
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHCcCHHHHH------HHHHHHHHHHHHHc
Confidence 57899999999999 799999999998888777665 14566554444443
No 482
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=41.82 E-value=41 Score=31.62 Aligned_cols=50 Identities=24% Similarity=0.220 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVT 76 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~ 76 (301)
..+..+++.+..|. +.......|+.|...|+|..+ ++++++|+.++.+..
T Consensus 360 ~gl~~~~~~~~~g~----~~~~~~~~l~~l~~~gll~~~-----~~~l~lT~~G~~~~d 409 (430)
T PRK08208 360 QGLDLADYRQRFGS----DPLRDFPELELLIDRGWLEQN-----GGRLRLTEEGLALSD 409 (430)
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE-----CCEEEECcchhhHHH
Confidence 56778888888887 544466788999999999988 789999998877653
No 483
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=41.44 E-value=41 Score=26.96 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=32.9
Q ss_pred HHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEcc
Q 043063 222 KLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVL 299 (301)
Q Consensus 222 ~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~ 299 (301)
..+++-+++.|.|||+|+| +.+.|.. . ..++ ..|...-..-+...|.++||+.++-+=.+
T Consensus 66 ~~l~~~~~~~l~pg~~lfV-eY~~D~e-------T------~~~L----~~G~pp~~TrLG~~Ll~~GFtwfKdWYfP 125 (170)
T PF06557_consen 66 DELYKLFSRYLEPGGRLFV-EYVEDRE-------T------RRQL----QRGVPPAETRLGFSLLKAGFTWFKDWYFP 125 (170)
T ss_dssp HHHHHHHHTT----SEEEE-E-TT-HH-------H------HHHH----HTT--GGGSHHHHHHHTTT--EEEEEE--
T ss_pred HHHHHHHHHHhhhcCeEEE-EEecCHH-------H------HHHH----HcCCCcccchhHHHHHhCCcEEEeeeecc
Confidence 5899999999999999886 4433311 0 0111 23555667778889999999998865433
No 484
>COG4519 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.20 E-value=38 Score=23.59 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=30.9
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
..++.+|.+++|. +.+-++..+++|-.+|+..+-
T Consensus 22 ~~nVP~lm~~TGw----PRRT~QDvikAlpglgi~l~F 55 (95)
T COG4519 22 TANVPELMAATGW----PRRTAQDVIKALPGLGIVLEF 55 (95)
T ss_pred cCChHHHHHHcCC----chhHHHHHHHhCcCCCeEEEe
Confidence 6799999999999 688899999999999998766
No 485
>PRK05660 HemN family oxidoreductase; Provisional
Probab=41.15 E-value=41 Score=31.00 Aligned_cols=50 Identities=14% Similarity=0.144 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVT 76 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~ 76 (301)
..++.+++.++.|. +.......++.|.+.|++..+ ++++++|+.+..+..
T Consensus 320 ~G~~~~~~~~~~g~----~~~~~~~~l~~l~~~gl~~~~-----~~~~~lt~~G~~~~d 369 (378)
T PRK05660 320 EAAPRADFEAYTGL----PESVIRPQLDEALAQGYLTET-----ADHWQITEHGKLFLN 369 (378)
T ss_pred cCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe-----CCEEEECcchhHHHH
Confidence 35678888888887 544456788999999999987 679999998876653
No 486
>TIGR02404 trehalos_R_Bsub trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli.
Probab=41.15 E-value=40 Score=28.49 Aligned_cols=41 Identities=22% Similarity=0.372 Sum_probs=35.5
Q ss_pred CHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063 21 SASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT 68 (301)
Q Consensus 21 t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 68 (301)
|=.|||++.|+ ...-+++=|+.|+..|+|.+.+ +.|.|...
T Consensus 26 sE~eLa~~~gV----SR~TVR~Al~~L~~eGli~r~~---G~GTfV~~ 66 (233)
T TIGR02404 26 SEHELMDQYGA----SRETVRKALNLLTEAGYIQKIQ---GKGSIVLN 66 (233)
T ss_pred CHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEeC---CceEEEec
Confidence 77899999999 6889999999999999999985 45777754
No 487
>PRK10225 DNA-binding transcriptional repressor UxuR; Provisional
Probab=41.13 E-value=46 Score=28.61 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=31.7
Q ss_pred CCC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 18 TPL-SASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 18 g~~-t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
..+ |-.+||+.+|+ ....++.-|+.|.+.|+|+..+
T Consensus 31 ~~LpsE~eLa~~~gV----SRtpVREAL~~L~~eGlV~~~~ 67 (257)
T PRK10225 31 ERLPPEREIAEMLDV----TRTVVREALIMLEIKGLVEVRR 67 (257)
T ss_pred CcCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEec
Confidence 356 68899999999 6889999999999999999774
No 488
>PRK09416 lstR lineage-specific thermal regulator protein; Provisional
Probab=40.79 E-value=36 Score=26.45 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=46.7
Q ss_pred ccccccccccccCCCCCCHHHHHHHhCC-CC---CCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063 4 NECRDGGKKGRLANTPLSASQILTRILP-SG---GGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV 75 (301)
Q Consensus 4 ~~a~~lglf~~L~~g~~t~~ela~~~~~-~~---~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 75 (301)
.+.+++=|+..|.++ .+--+|.+.+.- +. +.++..+..+|+-|...|+|.....+...-.|++|+.++...
T Consensus 41 ~~~~~l~IL~lL~~~-~yGYeI~k~I~e~~~g~~~~s~GtIYp~L~RLE~~GlI~s~~~~~~RK~Y~ITe~Gre~L 115 (135)
T PRK09416 41 EEDILLAILQLLMNE-KTGYELLQLLRQRGILTFEGNEGSLYTLLHRLEQNRFIQSSWDHEGAKYYQLTDKGNKML 115 (135)
T ss_pred cccHHHHHHHHHhCC-CCHHHHHHHHHHhcCCcccCCCccHHHHHHHHHHCCCeEEeecCCCceEEEECHHHHHHH
Confidence 344455566677766 777777765431 00 115789999999999999998642111234699999986543
No 489
>TIGR00331 hrcA heat shock gene repressor HrcA. In Bacillus subtilis, hrcA is the first gene of the dnaK operon and so is itself a heat shock gene.
Probab=40.73 E-value=27 Score=31.68 Aligned_cols=40 Identities=10% Similarity=0.280 Sum_probs=34.8
Q ss_pred ccCC-CCCCHHHHHHH--hCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 14 RLAN-TPLSASQILTR--ILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 14 ~L~~-g~~t~~ela~~--~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
+|.. +|.+..+|++. +++ .+.-+++-|..|...|+|.+..
T Consensus 15 ~l~~~~pv~s~~l~~~~~~~v----S~aTiR~d~~~Le~~G~l~~~h 57 (337)
T TIGR00331 15 YIKTGQPVGSKTLLEKYNLGL----SSATIRNDMADLEDLGFIEKPH 57 (337)
T ss_pred HHhcCCCcCHHHHHhhcCCCC----ChHHHHHHHHHHHHCCCccCCC
Confidence 4444 89999999999 888 5778899999999999999884
No 490
>cd04781 HTH_MerR-like_sg6 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 6) with at least two conserved cysteines present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, an
Probab=40.53 E-value=43 Score=25.23 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=23.9
Q ss_pred CCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 20 LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 20 ~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.|+.|+|+.+|+| .+.||+-...|+|...
T Consensus 1 m~IgevA~~~gvs--------~~tlRyYe~~GLl~p~ 29 (120)
T cd04781 1 LDIAEVARQSGLP--------ASTLRYYEEKGLIASI 29 (120)
T ss_pred CCHHHHHHHHCcC--------HHHHHHHHHCCCCCCC
Confidence 4789999999994 5677888889999854
No 491
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=40.27 E-value=41 Score=20.68 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=19.8
Q ss_pred CCCCCHHHHHHHhCCCCCCCcccHHHHHHH
Q 043063 17 NTPLSASQILTRILPSGGGDAENLQRILRL 46 (301)
Q Consensus 17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~ 46 (301)
-...|..|||+.+|+ ....++++.+.
T Consensus 18 ~~~~t~~eIa~~lg~----s~~~V~~~~~~ 43 (50)
T PF04545_consen 18 FEGLTLEEIAERLGI----SRSTVRRILKR 43 (50)
T ss_dssp TST-SHHHHHHHHTS----CHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCC----cHHHHHHHHHH
Confidence 357899999999999 67777776643
No 492
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=40.22 E-value=1.4e+02 Score=21.80 Aligned_cols=75 Identities=13% Similarity=0.183 Sum_probs=44.6
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhcccccc-------CHHHHHHH
Q 043063 212 VLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHM-------TEQEFKQL 284 (301)
Q Consensus 212 vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~r-------t~~e~~~~ 284 (301)
+|=|++.+++.++|+++.. +..+..++..- |.+ |. ... +...+ -.+-+..| .++++.+.
T Consensus 4 vLIHYp~~d~~~~l~~La~-~t~~~~ifTfA---P~T----~~---L~~--m~~iG-~lFP~~dRsp~i~~~~e~~l~~~ 69 (97)
T PF07109_consen 4 VLIHYPAEDAAQMLAHLAS-RTRGSLIFTFA---PRT----PL---LAL--MHAIG-KLFPRPDRSPRIYPHREEDLRRA 69 (97)
T ss_pred eEeccCHHHHHHHHHHHHH-hccCcEEEEEC---CCC----HH---HHH--HHHHh-ccCCCCCCCCcEEEeCHHHHHHH
Confidence 4446888889999999885 44444444322 221 11 111 11111 12223333 68999999
Q ss_pred HHhCCCCceEEEEccC
Q 043063 285 GFSAGFPHLRLYRVLD 300 (301)
Q Consensus 285 l~~aGf~~~~~~~~~~ 300 (301)
++++||++.+...+.-
T Consensus 70 l~~~g~~~~r~~ris~ 85 (97)
T PF07109_consen 70 LAAAGWRIGRTERISS 85 (97)
T ss_pred HHhCCCeeeecccccC
Confidence 9999999998877654
No 493
>COG3398 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.21 E-value=26 Score=29.56 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=40.6
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
.+.+|++.+.. +..++.|+.+-+++ +..-++..||.|.+.++++-..
T Consensus 102 ~R~~Iy~~i~~nPG~~lsEl~~nl~i----~R~TlRyhlriLe~~~li~a~~ 149 (240)
T COG3398 102 KRDGIYNYIKPNPGFSLSELRANLYI----NRSTLRYHLRILESNPLIEAGR 149 (240)
T ss_pred hHHHHHHHhccCCCccHHHHHHhcCC----ChHHHHHHHHHHHhCcchhhhc
Confidence 35678888886 56899999999999 8889999999999999998663
No 494
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism]
Probab=40.08 E-value=48 Score=27.48 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=37.8
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhh
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSL 74 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l 74 (301)
.+|..++|.+++. ......|+|..|...|++.+.... .+.-..+|..+..+
T Consensus 19 ~~t~~ela~~l~~----S~qta~R~l~~le~~~~I~R~~~~-~Gq~i~iTekG~~~ 69 (214)
T COG1339 19 KVTSSELAKRLGV----SSQTAARKLKELEDEGYITRTISK-RGQLITITEKGIDL 69 (214)
T ss_pred cccHHHHHHHhCc----CcHHHHHHHHhhccCCcEEEEecC-CCcEEEehHhHHHH
Confidence 3799999999999 577899999999999999976311 12345556555443
No 495
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=40.02 E-value=16 Score=22.19 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=16.5
Q ss_pred cCCCCCCHHHHHHHhCCCCCCCcccHHHHHH
Q 043063 15 LANTPLSASQILTRILPSGGGDAENLQRILR 45 (301)
Q Consensus 15 L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~ 45 (301)
|.....|..+||+.+|. ++.-+.+.|+
T Consensus 16 l~~~G~s~~~IA~~lg~----s~sTV~relk 42 (44)
T PF13936_consen 16 LLEQGMSIREIAKRLGR----SRSTVSRELK 42 (44)
T ss_dssp HHCS---HHHHHHHTT------HHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCc----CcHHHHHHHh
Confidence 33345899999999999 6777776664
No 496
>PRK14999 histidine utilization repressor; Provisional
Probab=39.93 E-value=44 Score=28.47 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=35.4
Q ss_pred CHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063 21 SASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT 68 (301)
Q Consensus 21 t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 68 (301)
|-.+||++.|+ ...-+++=|..|+..|+|.+.+ +.|.|...
T Consensus 38 sE~eLa~~~gV----SR~TVR~Al~~L~~eGli~r~~---GkGTfV~~ 78 (241)
T PRK14999 38 SEAELVAQYGF----SRMTINRALRELTDEGWLVRLQ---GVGTFVAE 78 (241)
T ss_pred CHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEec---CcEEEECC
Confidence 78899999999 6889999999999999999885 45677644
No 497
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=39.92 E-value=43 Score=23.78 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=21.5
Q ss_pred CCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceec
Q 043063 20 LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSE 55 (301)
Q Consensus 20 ~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~ 55 (301)
.|..++|+.+|+ .+ +.|+.....|++.-
T Consensus 2 ~~i~e~A~~~gv----s~----~tLr~ye~~Gli~p 29 (91)
T cd04766 2 YVISVAAELSGM----HP----QTLRLYERLGLLSP 29 (91)
T ss_pred cCHHHHHHHHCc----CH----HHHHHHHHCCCcCC
Confidence 478999999999 44 45556677899974
No 498
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=39.76 E-value=35 Score=30.34 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEeccccCCC
Q 043063 219 DECKLIMENCYKAIPAGGKLIACEPVLPDD 248 (301)
Q Consensus 219 ~~~~~iL~~~~~aL~pgg~lli~e~~~~~~ 248 (301)
.+...+|..+...|+|||+++|+-+-.=|+
T Consensus 213 ~~L~~~L~~~~~~L~~gGrl~visfHSlED 242 (296)
T PRK00050 213 EELERALEAALDLLKPGGRLAVISFHSLED 242 (296)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence 346788999999999999999998865444
No 499
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=39.65 E-value=43 Score=24.91 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=22.8
Q ss_pred CCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 20 LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 20 ~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.+..|+|+.+|+| .+.||+-...|++...
T Consensus 1 m~i~eva~~~gvs--------~~tlR~Ye~~GLl~p~ 29 (112)
T cd01282 1 MRIGELAARTGVS--------VRSLRYYEEQGLLVPE 29 (112)
T ss_pred CCHHHHHHHHCCC--------HHHHHHHHHCCCCCCC
Confidence 3789999999994 4567777888999743
No 500
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=39.50 E-value=36 Score=24.76 Aligned_cols=35 Identities=20% Similarity=0.142 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.+.|+++||+.+++ +++.+.|+++....+.+-+.-
T Consensus 20 ~~~~~~~lA~~~~~----S~~~l~r~f~~~~g~s~~~~i 54 (107)
T PRK10219 20 QPLNIDVVAKKSGY----SKWYLQRMFRTVTHQTLGDYI 54 (107)
T ss_pred CCCCHHHHHHHHCC----CHHHHHHHHHHHHCcCHHHHH
Confidence 57899999999999 799999999887666655544
Done!