Query 043063
Match_columns 301
No_of_seqs 145 out of 1455
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 21:58:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043063.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043063hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 2.6E-51 8.9E-56 372.1 16.5 285 3-300 25-336 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 3.3E-49 1.1E-53 359.7 21.6 293 3-300 37-355 (364)
3 3reo_A (ISO)eugenol O-methyltr 100.0 4.8E-48 1.6E-52 352.6 21.4 296 3-300 38-357 (368)
4 3lst_A CALO1 methyltransferase 100.0 9.8E-46 3.4E-50 335.1 23.2 278 3-298 39-336 (348)
5 3gwz_A MMCR; methyltransferase 100.0 1.1E-45 3.9E-50 337.1 18.0 278 3-298 55-356 (369)
6 3i53_A O-methyltransferase; CO 100.0 4.5E-46 1.6E-50 335.2 14.8 277 3-299 22-322 (332)
7 1zg3_A Isoflavanone 4'-O-methy 100.0 2.2E-44 7.6E-49 327.4 16.1 290 3-299 27-348 (358)
8 1fp1_D Isoliquiritigenin 2'-O- 100.0 9.3E-44 3.2E-48 324.9 18.9 294 3-299 41-361 (372)
9 2ip2_A Probable phenazine-spec 100.0 8.7E-44 3E-48 320.4 16.8 276 3-299 25-323 (334)
10 1fp2_A Isoflavone O-methyltran 100.0 3.4E-43 1.2E-47 318.9 18.0 287 3-299 33-342 (352)
11 3dp7_A SAM-dependent methyltra 100.0 8.1E-42 2.8E-46 311.0 12.9 276 3-299 32-343 (363)
12 1qzz_A RDMB, aclacinomycin-10- 100.0 5.2E-41 1.8E-45 306.8 15.8 280 3-299 33-340 (374)
13 1tw3_A COMT, carminomycin 4-O- 100.0 1.7E-40 5.7E-45 302.0 15.0 280 3-299 36-340 (360)
14 2r3s_A Uncharacterized protein 100.0 1.3E-39 4.4E-44 293.1 16.4 276 3-300 23-325 (335)
15 3mcz_A O-methyltransferase; ad 100.0 1.9E-39 6.7E-44 294.1 16.8 270 3-296 41-337 (352)
16 1x19_A CRTF-related protein; m 100.0 5.3E-39 1.8E-43 292.0 18.9 267 3-299 48-349 (359)
17 4gek_A TRNA (CMO5U34)-methyltr 99.7 1.3E-16 4.4E-21 138.1 9.9 136 158-296 68-243 (261)
18 3dtn_A Putative methyltransfer 99.6 1.4E-14 4.7E-19 122.9 10.9 139 159-298 43-214 (234)
19 1vl5_A Unknown conserved prote 99.5 1.4E-14 4.7E-19 125.0 8.5 141 148-298 26-190 (260)
20 3ujc_A Phosphoethanolamine N-m 99.5 2.7E-14 9.3E-19 123.1 9.9 141 149-299 45-207 (266)
21 3dli_A Methyltransferase; PSI- 99.5 5.8E-14 2E-18 119.7 10.2 128 158-299 39-185 (240)
22 3hnr_A Probable methyltransfer 99.5 2.4E-14 8.2E-19 120.2 7.6 137 158-297 43-200 (220)
23 1xtp_A LMAJ004091AAA; SGPP, st 99.5 3.8E-14 1.3E-18 121.5 8.5 135 149-299 83-239 (254)
24 2qm3_A Predicted methyltransfe 99.5 2.4E-13 8.3E-18 123.6 13.6 201 10-245 47-280 (373)
25 3ou2_A SAM-dependent methyltra 99.5 5.3E-14 1.8E-18 117.6 7.8 134 158-295 44-202 (218)
26 1kpg_A CFA synthase;, cyclopro 99.5 1.5E-13 5.2E-18 120.1 11.0 147 149-298 54-228 (287)
27 3bus_A REBM, methyltransferase 99.5 1.1E-13 3.9E-18 119.9 10.0 142 149-299 51-217 (273)
28 3dlc_A Putative S-adenosyl-L-m 99.5 1.4E-14 4.6E-19 121.2 3.1 144 149-299 34-204 (219)
29 1xxl_A YCGJ protein; structura 99.5 9.9E-14 3.4E-18 118.2 8.4 140 150-298 12-174 (239)
30 3vc1_A Geranyl diphosphate 2-C 99.5 1.2E-13 4.2E-18 122.4 9.1 141 148-299 105-270 (312)
31 2o57_A Putative sarcosine dime 99.5 8E-14 2.7E-18 122.5 7.5 131 158-299 80-235 (297)
32 3hem_A Cyclopropane-fatty-acyl 99.5 4.6E-13 1.6E-17 118.1 12.1 145 149-299 62-244 (302)
33 1nkv_A Hypothetical protein YJ 99.4 1.7E-13 6E-18 117.6 8.9 137 150-298 27-187 (256)
34 3ege_A Putative methyltransfer 99.4 4.1E-13 1.4E-17 115.9 10.5 136 151-298 26-178 (261)
35 2fk8_A Methoxy mycolic acid sy 99.4 5.7E-13 1.9E-17 118.3 11.6 147 149-298 80-254 (318)
36 2qe6_A Uncharacterized protein 99.4 3.5E-13 1.2E-17 117.4 9.7 125 160-294 77-238 (274)
37 3lcc_A Putative methyl chlorid 99.4 2.4E-13 8.2E-18 115.4 8.4 119 162-300 68-209 (235)
38 3h2b_A SAM-dependent methyltra 99.4 8.1E-14 2.8E-18 115.5 5.1 124 161-299 42-183 (203)
39 2ex4_A Adrenal gland protein A 99.4 2.7E-13 9.4E-18 115.5 8.3 124 160-299 79-226 (241)
40 3dh0_A SAM dependent methyltra 99.4 4.9E-13 1.7E-17 112.0 9.4 130 149-299 27-182 (219)
41 3l8d_A Methyltransferase; stru 99.4 5.3E-13 1.8E-17 113.5 9.6 130 159-299 52-201 (242)
42 2p7i_A Hypothetical protein; p 99.4 2.1E-13 7.3E-18 116.1 6.1 133 160-299 42-200 (250)
43 3sm3_A SAM-dependent methyltra 99.4 8E-13 2.7E-17 111.6 9.3 137 159-298 29-207 (235)
44 3mgg_A Methyltransferase; NYSG 99.4 2.3E-13 7.8E-18 118.3 5.6 136 158-298 35-198 (276)
45 4fsd_A Arsenic methyltransfera 99.4 1E-12 3.5E-17 119.8 9.9 129 159-297 82-250 (383)
46 3f4k_A Putative methyltransfer 99.4 8.7E-13 3E-17 113.2 8.9 129 158-299 44-197 (257)
47 3kkz_A Uncharacterized protein 99.4 6.2E-13 2.1E-17 115.1 7.9 129 158-299 44-197 (267)
48 3g2m_A PCZA361.24; SAM-depende 99.4 7.3E-13 2.5E-17 116.6 8.0 150 148-299 72-275 (299)
49 3e23_A Uncharacterized protein 99.4 3.1E-13 1.1E-17 112.7 5.2 125 158-298 41-182 (211)
50 1pjz_A Thiopurine S-methyltran 99.4 3.5E-13 1.2E-17 112.1 5.3 121 158-298 20-176 (203)
51 3ocj_A Putative exported prote 99.4 8.2E-13 2.8E-17 116.7 7.9 140 158-298 116-291 (305)
52 3pfg_A N-methyltransferase; N, 99.4 4.6E-13 1.6E-17 115.5 5.2 89 159-247 49-156 (263)
53 1ve3_A Hypothetical protein PH 99.3 7.8E-14 2.7E-18 117.4 0.1 85 160-244 38-144 (227)
54 4htf_A S-adenosylmethionine-de 99.3 8.4E-13 2.9E-17 115.3 6.3 143 150-299 60-233 (285)
55 3g5l_A Putative S-adenosylmeth 99.3 1.6E-12 5.6E-17 111.3 7.4 144 150-298 35-216 (253)
56 3gu3_A Methyltransferase; alph 99.3 1.7E-12 5.9E-17 113.4 7.7 136 158-296 20-188 (284)
57 3i9f_A Putative type 11 methyl 99.3 7.4E-13 2.5E-17 106.5 4.8 124 151-299 9-149 (170)
58 3ccf_A Cyclopropane-fatty-acyl 99.3 2.4E-12 8.1E-17 112.1 8.2 142 149-298 47-210 (279)
59 3bkw_A MLL3908 protein, S-aden 99.3 5.4E-12 1.9E-16 107.2 9.6 145 150-298 34-214 (243)
60 1vlm_A SAM-dependent methyltra 99.3 3.1E-12 1.1E-16 107.4 7.3 129 161-299 48-189 (219)
61 3ggd_A SAM-dependent methyltra 99.3 4.7E-12 1.6E-16 108.0 7.5 134 158-298 54-219 (245)
62 2yqz_A Hypothetical protein TT 99.3 9.3E-12 3.2E-16 107.0 9.2 134 158-297 37-195 (263)
63 3bxo_A N,N-dimethyltransferase 99.3 3.9E-12 1.3E-16 107.8 6.0 89 159-247 39-146 (239)
64 3cc8_A Putative methyltransfer 99.2 5.6E-12 1.9E-16 105.9 6.0 142 148-299 22-186 (230)
65 3e8s_A Putative SAM dependent 99.2 1.5E-12 5.3E-17 109.2 2.4 133 159-297 51-208 (227)
66 3g07_A 7SK snRNA methylphospha 99.2 3.3E-12 1.1E-16 112.2 4.5 102 188-298 154-269 (292)
67 3jwh_A HEN1; methyltransferase 99.2 8.2E-12 2.8E-16 104.5 6.7 126 159-293 28-187 (217)
68 2aot_A HMT, histamine N-methyl 99.2 1E-11 3.5E-16 108.9 7.0 127 159-295 51-218 (292)
69 2a14_A Indolethylamine N-methy 99.2 3.1E-12 1.1E-16 110.6 3.0 125 159-298 54-238 (263)
70 3giw_A Protein of unknown func 99.2 3.5E-11 1.2E-15 103.7 9.4 126 160-294 78-243 (277)
71 2p35_A Trans-aconitate 2-methy 99.2 1.1E-11 3.7E-16 106.4 6.3 139 150-292 24-184 (259)
72 2xvm_A Tellurite resistance pr 99.2 1.7E-11 5.7E-16 100.8 7.1 128 150-297 23-172 (199)
73 3jwg_A HEN1, methyltransferase 99.2 1.7E-11 5.8E-16 102.7 7.2 125 160-293 29-187 (219)
74 3bkx_A SAM-dependent methyltra 99.2 2.2E-11 7.7E-16 105.5 8.2 144 150-298 34-219 (275)
75 4hg2_A Methyltransferase type 99.2 1.7E-11 5.7E-16 105.6 7.2 84 160-246 39-139 (257)
76 3d2l_A SAM-dependent methyltra 99.2 2.4E-11 8.2E-16 103.1 7.5 81 160-240 33-135 (243)
77 2gb4_A Thiopurine S-methyltran 99.2 2E-11 6.9E-16 104.9 6.5 118 160-297 68-226 (252)
78 2ld4_A Anamorsin; methyltransf 99.2 2.5E-11 8.7E-16 98.1 5.9 109 158-290 10-128 (176)
79 2zfu_A Nucleomethylin, cerebra 99.2 4.9E-11 1.7E-15 99.5 7.2 101 158-297 65-178 (215)
80 3cgg_A SAM-dependent methyltra 99.2 5.7E-11 1.9E-15 97.0 7.3 119 150-298 38-175 (195)
81 2p8j_A S-adenosylmethionine-de 99.2 9.1E-12 3.1E-16 103.4 2.6 134 160-296 23-181 (209)
82 1ri5_A MRNA capping enzyme; me 99.1 3.5E-11 1.2E-15 105.3 5.8 140 158-298 62-250 (298)
83 1y8c_A S-adenosylmethionine-de 99.1 4.2E-11 1.4E-15 101.7 5.8 82 160-241 37-141 (246)
84 2g72_A Phenylethanolamine N-me 99.1 1.8E-11 6.2E-16 107.1 3.0 125 160-299 71-257 (289)
85 4e2x_A TCAB9; kijanose, tetron 99.1 2E-10 6.7E-15 105.7 9.8 137 148-299 96-254 (416)
86 2i62_A Nicotinamide N-methyltr 99.1 5.6E-11 1.9E-15 102.2 5.2 126 159-299 55-240 (265)
87 2kw5_A SLR1183 protein; struct 99.1 1.6E-10 5.4E-15 95.4 6.6 118 163-298 32-171 (202)
88 3ofk_A Nodulation protein S; N 99.0 1.9E-10 6.5E-15 95.9 5.9 86 158-243 49-155 (216)
89 3thr_A Glycine N-methyltransfe 99.0 4.7E-11 1.6E-15 104.4 2.2 85 159-243 56-176 (293)
90 2gs9_A Hypothetical protein TT 99.0 3.8E-10 1.3E-14 93.7 7.0 120 160-289 36-171 (211)
91 3uwp_A Histone-lysine N-methyl 99.0 2.7E-10 9.2E-15 103.1 6.2 97 149-249 163-295 (438)
92 3g5t_A Trans-aconitate 3-methy 99.0 2.4E-10 8.2E-15 100.4 5.5 83 159-244 35-151 (299)
93 3orh_A Guanidinoacetate N-meth 99.0 7.3E-11 2.5E-15 100.3 1.5 118 159-295 59-207 (236)
94 3q87_B N6 adenine specific DNA 99.0 3.1E-09 1.1E-13 85.5 9.8 106 160-299 23-150 (170)
95 3m70_A Tellurite resistance pr 98.9 4.7E-10 1.6E-14 97.8 4.7 127 150-296 111-258 (286)
96 3e05_A Precorrin-6Y C5,15-meth 98.9 2.9E-09 1E-13 88.0 9.2 110 151-297 32-166 (204)
97 3mq2_A 16S rRNA methyltransfer 98.9 2E-09 6.9E-14 89.9 6.2 127 158-298 25-184 (218)
98 1fbn_A MJ fibrillarin homologu 98.9 8.8E-09 3E-13 86.9 9.8 116 158-299 72-214 (230)
99 1zx0_A Guanidinoacetate N-meth 98.9 9.5E-10 3.2E-14 93.2 3.6 86 159-244 59-172 (236)
100 3iv6_A Putative Zn-dependent a 98.8 1.6E-09 5.4E-14 93.2 4.3 93 149-243 35-149 (261)
101 4df3_A Fibrillarin-like rRNA/T 98.8 3.4E-09 1.1E-13 89.5 5.8 120 154-299 72-218 (233)
102 1wzn_A SAM-dependent methyltra 98.8 4E-09 1.4E-13 89.9 6.1 92 150-242 32-145 (252)
103 1af7_A Chemotaxis receptor met 98.8 2.1E-09 7.2E-14 93.2 4.3 55 189-243 195-253 (274)
104 2vdw_A Vaccinia virus capping 98.8 1.8E-09 6.1E-14 95.1 3.9 139 160-298 48-246 (302)
105 2pxx_A Uncharacterized protein 98.8 2.7E-09 9.2E-14 88.4 4.4 87 159-245 41-162 (215)
106 3htx_A HEN1; HEN1, small RNA m 98.8 8.7E-09 3E-13 100.2 8.5 84 160-244 721-836 (950)
107 3grz_A L11 mtase, ribosomal pr 98.8 2.2E-09 7.5E-14 88.8 3.2 104 159-297 59-184 (205)
108 3p2e_A 16S rRNA methylase; met 98.8 8.1E-09 2.8E-13 87.0 6.0 129 159-298 23-185 (225)
109 1yb2_A Hypothetical protein TA 98.7 2.7E-09 9.3E-14 92.6 2.7 86 150-243 101-212 (275)
110 3bgv_A MRNA CAP guanine-N7 met 98.7 9.7E-09 3.3E-13 90.7 6.0 138 160-298 34-232 (313)
111 2b3t_A Protein methyltransfera 98.7 3.2E-08 1.1E-12 85.8 8.5 107 160-297 109-262 (276)
112 3mb5_A SAM-dependent methyltra 98.7 4.1E-09 1.4E-13 90.1 2.9 112 149-298 83-222 (255)
113 4dzr_A Protein-(glutamine-N5) 98.7 2.9E-09 1E-13 88.2 1.4 85 159-243 29-165 (215)
114 3m33_A Uncharacterized protein 98.7 3.5E-09 1.2E-13 89.1 1.8 100 159-297 47-166 (226)
115 3hm2_A Precorrin-6Y C5,15-meth 98.7 1.4E-08 4.7E-13 81.7 5.2 80 158-244 23-129 (178)
116 3njr_A Precorrin-6Y methylase; 98.7 2.7E-08 9.2E-13 82.4 7.1 79 158-243 53-155 (204)
117 1dus_A MJ0882; hypothetical pr 98.7 1.9E-08 6.4E-13 81.8 6.0 92 151-244 44-159 (194)
118 3fpf_A Mtnas, putative unchara 98.6 4.7E-08 1.6E-12 85.1 7.2 80 158-243 120-223 (298)
119 3mti_A RRNA methylase; SAM-dep 98.6 2.6E-08 9E-13 80.8 5.3 88 158-245 20-138 (185)
120 2h00_A Methyltransferase 10 do 98.6 1.1E-09 3.7E-14 93.9 -3.5 131 160-300 65-240 (254)
121 1l3i_A Precorrin-6Y methyltran 98.6 1.3E-08 4.3E-13 82.6 2.9 81 158-243 31-135 (192)
122 2avn_A Ubiquinone/menaquinone 98.6 1.2E-08 4.1E-13 87.6 2.4 83 160-243 54-153 (260)
123 3bwc_A Spermidine synthase; SA 98.6 2.1E-08 7.3E-13 88.3 3.7 114 159-298 94-240 (304)
124 1u2z_A Histone-lysine N-methyl 98.6 9.6E-08 3.3E-12 87.7 8.2 96 149-248 232-365 (433)
125 2nxc_A L11 mtase, ribosomal pr 98.6 3.4E-08 1.2E-12 84.7 4.5 105 159-298 119-244 (254)
126 2pwy_A TRNA (adenine-N(1)-)-me 98.6 4.9E-08 1.7E-12 83.3 5.2 86 150-243 87-199 (258)
127 3hp7_A Hemolysin, putative; st 98.6 6.6E-08 2.3E-12 84.2 6.0 134 150-299 75-233 (291)
128 1g8a_A Fibrillarin-like PRE-rR 98.5 2.3E-07 8E-12 77.7 9.0 116 158-299 71-213 (227)
129 3evz_A Methyltransferase; NYSG 98.5 6.8E-08 2.3E-12 81.1 5.6 110 158-296 53-204 (230)
130 2yxd_A Probable cobalt-precorr 98.5 5.8E-08 2E-12 78.1 5.0 78 158-243 33-132 (183)
131 3b3j_A Histone-arginine methyl 98.5 2.2E-08 7.7E-13 93.5 2.8 92 149-241 148-262 (480)
132 2pjd_A Ribosomal RNA small sub 98.5 2.4E-08 8.3E-13 89.4 2.4 94 149-243 186-304 (343)
133 2y1w_A Histone-arginine methyl 98.5 1.8E-08 6.3E-13 90.4 1.6 85 158-242 48-155 (348)
134 3lbf_A Protein-L-isoaspartate 98.5 5.7E-08 2E-12 80.4 4.3 84 152-244 70-176 (210)
135 3lpm_A Putative methyltransfer 98.5 1.6E-07 5.6E-12 80.5 7.1 84 158-241 46-175 (259)
136 3opn_A Putative hemolysin; str 98.5 2.1E-08 7.2E-13 84.8 1.2 119 160-299 37-185 (232)
137 3id6_C Fibrillarin-like rRNA/T 98.5 1.6E-07 5.4E-12 79.3 6.5 116 158-298 74-216 (232)
138 1xdz_A Methyltransferase GIDB; 98.5 3.3E-08 1.1E-12 83.9 2.1 106 158-297 68-201 (240)
139 4dcm_A Ribosomal RNA large sub 98.5 7.9E-08 2.7E-12 87.1 4.7 92 150-242 213-334 (375)
140 3p9n_A Possible methyltransfer 98.5 1.7E-07 5.8E-12 76.3 5.9 86 160-246 44-157 (189)
141 1o54_A SAM-dependent O-methylt 98.5 7.7E-08 2.6E-12 83.4 4.1 87 149-243 102-214 (277)
142 1nt2_A Fibrillarin-like PRE-rR 98.5 1.3E-07 4.6E-12 78.6 5.1 81 158-242 55-161 (210)
143 3lcv_B Sisomicin-gentamicin re 98.5 2.3E-07 8E-12 78.7 6.4 115 160-295 132-269 (281)
144 1vbf_A 231AA long hypothetical 98.4 1.5E-07 5.3E-12 79.0 4.4 86 150-244 61-167 (231)
145 3kr9_A SAM-dependent methyltra 98.4 8.1E-07 2.8E-11 74.4 8.7 79 159-241 14-118 (225)
146 3tfw_A Putative O-methyltransf 98.4 2E-07 6.9E-12 79.5 5.0 83 159-246 62-174 (248)
147 3r0q_C Probable protein argini 98.4 9.1E-08 3.1E-12 86.8 2.7 87 158-244 61-171 (376)
148 3fzg_A 16S rRNA methylase; met 98.4 2.6E-08 9E-13 80.8 -0.8 80 159-242 48-152 (200)
149 3eey_A Putative rRNA methylase 98.4 1.6E-07 5.5E-12 76.9 3.8 89 158-246 20-143 (197)
150 2yxe_A Protein-L-isoaspartate 98.4 1.8E-07 6.3E-12 77.6 3.6 84 151-243 69-178 (215)
151 1o9g_A RRNA methyltransferase; 98.4 5.9E-07 2E-11 76.5 6.7 53 192-244 149-216 (250)
152 3u81_A Catechol O-methyltransf 98.3 1.3E-07 4.6E-12 79.0 2.4 84 160-246 58-174 (221)
153 3dmg_A Probable ribosomal RNA 98.3 3.1E-07 1.1E-11 83.3 4.7 83 160-242 233-340 (381)
154 3g89_A Ribosomal RNA small sub 98.3 1.2E-07 4E-12 81.1 1.7 80 158-243 78-185 (249)
155 3dxy_A TRNA (guanine-N(7)-)-me 98.3 1.2E-07 4E-12 79.4 1.6 82 160-242 34-150 (218)
156 3q7e_A Protein arginine N-meth 98.3 1.8E-07 6.1E-12 84.0 2.8 81 160-240 66-171 (349)
157 2frn_A Hypothetical protein PH 98.3 4.6E-07 1.6E-11 78.7 5.3 106 159-294 124-253 (278)
158 2fyt_A Protein arginine N-meth 98.3 2.6E-07 8.8E-12 82.6 3.8 82 158-239 62-168 (340)
159 1ej0_A FTSJ; methyltransferase 98.3 5.7E-07 2E-11 71.6 5.3 84 158-245 20-139 (180)
160 2ipx_A RRNA 2'-O-methyltransfe 98.3 4.2E-07 1.4E-11 76.5 4.5 116 158-298 75-217 (233)
161 3lec_A NADB-rossmann superfami 98.3 2.1E-06 7.2E-11 72.1 8.5 103 159-297 20-148 (230)
162 3duw_A OMT, O-methyltransferas 98.3 5.5E-07 1.9E-11 75.2 4.7 83 159-246 57-171 (223)
163 3ntv_A MW1564 protein; rossman 98.3 3.1E-07 1.1E-11 77.5 3.2 83 159-246 70-180 (232)
164 1jg1_A PIMT;, protein-L-isoasp 98.3 3.6E-07 1.2E-11 77.1 3.5 86 149-243 81-190 (235)
165 2fca_A TRNA (guanine-N(7)-)-me 98.3 6.3E-07 2.2E-11 74.6 5.0 82 160-242 38-153 (213)
166 3adn_A Spermidine synthase; am 98.3 3.4E-07 1.2E-11 80.1 3.3 83 160-242 83-198 (294)
167 1yzh_A TRNA (guanine-N(7)-)-me 98.3 9.6E-07 3.3E-11 73.3 5.9 82 160-242 41-156 (214)
168 3dou_A Ribosomal RNA large sub 98.3 6.2E-07 2.1E-11 73.4 4.5 90 150-243 15-140 (191)
169 2ift_A Putative methylase HI07 98.2 1.4E-07 4.7E-12 77.9 0.3 82 161-245 54-166 (201)
170 1dl5_A Protein-L-isoaspartate 98.2 6.3E-07 2.1E-11 79.3 4.4 84 151-243 67-176 (317)
171 3ckk_A TRNA (guanine-N(7)-)-me 98.2 8E-07 2.7E-11 75.2 4.5 83 159-242 45-168 (235)
172 2vdv_E TRNA (guanine-N(7)-)-me 98.2 5.1E-07 1.7E-11 76.8 3.0 78 159-241 48-172 (246)
173 1g6q_1 HnRNP arginine N-methyl 98.2 3.1E-07 1.1E-11 81.7 1.6 81 160-240 38-143 (328)
174 2bm8_A Cephalosporin hydroxyla 98.2 1.8E-06 6.2E-11 73.0 6.2 78 161-243 82-188 (236)
175 2fhp_A Methylase, putative; al 98.2 3.2E-07 1.1E-11 74.1 1.3 85 159-246 43-158 (187)
176 1jsx_A Glucose-inhibited divis 98.2 6.1E-07 2.1E-11 73.9 3.1 77 161-243 66-166 (207)
177 1ws6_A Methyltransferase; stru 98.2 3.5E-07 1.2E-11 72.7 1.5 82 160-245 41-150 (171)
178 2yvl_A TRMI protein, hypotheti 98.2 2.1E-06 7.2E-11 72.6 6.5 87 150-244 82-192 (248)
179 3sso_A Methyltransferase; macr 98.2 6.2E-07 2.1E-11 81.0 3.1 80 160-245 216-327 (419)
180 2ozv_A Hypothetical protein AT 98.2 1.1E-06 3.7E-11 75.5 4.5 85 158-242 34-170 (260)
181 3tr6_A O-methyltransferase; ce 98.2 5.8E-07 2E-11 75.1 2.7 82 160-246 64-178 (225)
182 2esr_A Methyltransferase; stru 98.2 2.6E-07 8.9E-12 74.2 0.5 85 159-246 30-142 (177)
183 2gpy_A O-methyltransferase; st 98.2 5E-07 1.7E-11 76.0 2.2 82 160-246 54-164 (233)
184 2plw_A Ribosomal RNA methyltra 98.2 3.2E-06 1.1E-10 69.1 6.8 89 151-243 13-155 (201)
185 1ixk_A Methyltransferase; open 98.2 1.7E-06 5.7E-11 76.5 5.3 88 158-245 116-249 (315)
186 2p41_A Type II methyltransfera 98.2 2.1E-06 7.2E-11 75.5 5.9 84 158-241 80-190 (305)
187 1i9g_A Hypothetical protein RV 98.2 1E-06 3.5E-11 76.1 3.8 88 149-244 89-205 (280)
188 3bzb_A Uncharacterized protein 98.1 1.8E-06 6.1E-11 75.0 5.1 81 159-241 78-204 (281)
189 3frh_A 16S rRNA methylase; met 98.1 1E-06 3.5E-11 74.1 3.3 83 159-242 104-206 (253)
190 3r3h_A O-methyltransferase, SA 98.1 6.7E-07 2.3E-11 76.0 2.2 82 160-246 60-174 (242)
191 1zq9_A Probable dimethyladenos 98.1 6.5E-07 2.2E-11 78.0 1.9 89 149-239 18-144 (285)
192 2wa2_A Non-structural protein 98.1 3.8E-06 1.3E-10 72.7 6.1 86 158-244 80-195 (276)
193 2oxt_A Nucleoside-2'-O-methylt 98.1 3.1E-06 1.1E-10 72.8 5.4 86 158-244 72-187 (265)
194 4hc4_A Protein arginine N-meth 98.1 1.2E-06 4.3E-11 78.9 3.0 80 161-240 84-187 (376)
195 3dr5_A Putative O-methyltransf 98.1 8.5E-07 2.9E-11 74.3 1.6 81 161-246 57-167 (221)
196 3c3p_A Methyltransferase; NP_9 98.1 8.1E-07 2.8E-11 73.5 1.5 82 160-246 56-164 (210)
197 3gjy_A Spermidine synthase; AP 98.1 1.3E-06 4.4E-11 76.9 2.8 82 162-243 91-201 (317)
198 1p91_A Ribosomal RNA large sub 98.1 2.1E-06 7.1E-11 73.7 4.0 78 159-245 84-181 (269)
199 1nv8_A HEMK protein; class I a 98.1 4.1E-06 1.4E-10 72.9 5.7 80 160-240 123-247 (284)
200 2hnk_A SAM-dependent O-methylt 98.1 9.1E-07 3.1E-11 74.8 1.4 82 160-246 60-185 (239)
201 2i7c_A Spermidine synthase; tr 98.0 1.4E-06 4.8E-11 75.8 2.3 84 159-242 77-192 (283)
202 3gdh_A Trimethylguanosine synt 98.0 4.7E-08 1.6E-12 82.8 -7.1 79 160-240 78-179 (241)
203 1sui_A Caffeoyl-COA O-methyltr 98.0 2E-06 7E-11 73.2 2.9 81 160-245 79-193 (247)
204 1iy9_A Spermidine synthase; ro 98.0 9.4E-07 3.2E-11 76.6 0.7 83 160-242 75-189 (275)
205 2avd_A Catechol-O-methyltransf 98.0 1.3E-06 4.6E-11 73.0 1.4 82 160-246 69-183 (229)
206 1mjf_A Spermidine synthase; sp 98.0 2.2E-06 7.7E-11 74.4 2.9 83 160-242 75-193 (281)
207 2fpo_A Methylase YHHF; structu 98.0 1.4E-06 4.9E-11 71.7 1.4 82 161-245 55-163 (202)
208 1uir_A Polyamine aminopropyltr 98.0 2.1E-06 7.1E-11 75.8 2.5 83 160-242 77-195 (314)
209 2b25_A Hypothetical protein; s 98.0 2.4E-06 8.1E-11 76.1 2.6 87 150-244 96-221 (336)
210 3gnl_A Uncharacterized protein 98.0 9.3E-06 3.2E-10 68.7 6.1 80 159-242 20-125 (244)
211 1ne2_A Hypothetical protein TA 98.0 3.8E-06 1.3E-10 68.8 3.3 73 159-232 50-139 (200)
212 4azs_A Methyltransferase WBDD; 98.0 1.1E-06 3.6E-11 84.0 -0.1 87 160-246 66-177 (569)
213 3tma_A Methyltransferase; thum 97.9 1.1E-05 3.6E-10 72.4 6.3 95 148-243 192-318 (354)
214 2pt6_A Spermidine synthase; tr 97.9 2.8E-06 9.5E-11 75.3 2.3 83 160-242 116-230 (321)
215 2b2c_A Spermidine synthase; be 97.9 2.7E-06 9.2E-11 75.1 2.0 83 160-242 108-222 (314)
216 3c3y_A Pfomt, O-methyltransfer 97.9 2.8E-06 9.5E-11 71.8 2.0 81 160-245 70-184 (237)
217 2o07_A Spermidine synthase; st 97.9 1.7E-06 5.8E-11 76.0 0.6 84 159-242 94-209 (304)
218 1xj5_A Spermidine synthase 1; 97.9 2.9E-06 9.9E-11 75.5 2.0 83 159-241 119-234 (334)
219 1i1n_A Protein-L-isoaspartate 97.9 7E-06 2.4E-10 68.5 4.1 79 158-244 75-184 (226)
220 3cbg_A O-methyltransferase; cy 97.9 2.6E-06 8.9E-11 71.7 1.1 82 160-246 72-186 (232)
221 2cmg_A Spermidine synthase; tr 97.9 1.3E-05 4.6E-10 68.8 5.4 76 160-242 72-171 (262)
222 1inl_A Spermidine synthase; be 97.9 3.8E-06 1.3E-10 73.5 1.8 83 160-242 90-205 (296)
223 3k6r_A Putative transferase PH 97.8 1.2E-05 3.9E-10 69.6 4.5 83 158-246 123-229 (278)
224 1r18_A Protein-L-isoaspartate( 97.8 8.7E-06 3E-10 68.1 3.4 78 158-243 82-195 (227)
225 1yub_A Ermam, rRNA methyltrans 97.8 4.1E-06 1.4E-10 71.1 0.7 94 149-243 19-146 (245)
226 3b5i_A S-adenosyl-L-methionine 97.7 0.00011 3.7E-09 66.2 9.4 107 191-297 135-297 (374)
227 2yxl_A PH0851 protein, 450AA l 97.7 3E-05 1E-09 71.8 5.7 89 158-246 257-393 (450)
228 2pbf_A Protein-L-isoaspartate 97.7 1.4E-05 4.7E-10 66.7 3.0 78 158-243 78-194 (227)
229 4gqb_A Protein arginine N-meth 97.7 2.1E-05 7.3E-10 75.2 4.5 112 121-239 322-464 (637)
230 3ajd_A Putative methyltransfer 97.7 1.7E-05 5.9E-10 68.5 3.5 89 158-246 81-215 (274)
231 3a27_A TYW2, uncharacterized p 97.7 1E-05 3.6E-10 69.8 1.7 83 158-246 117-223 (272)
232 2xyq_A Putative 2'-O-methyl tr 97.7 2.7E-05 9.3E-10 67.7 4.1 80 158-243 61-172 (290)
233 1wy7_A Hypothetical protein PH 97.7 3.8E-05 1.3E-09 63.0 4.7 73 159-232 48-141 (207)
234 3tm4_A TRNA (guanine N2-)-meth 97.6 3.7E-05 1.3E-09 69.4 4.9 82 158-241 215-328 (373)
235 2nyu_A Putative ribosomal RNA 97.6 2.3E-05 7.7E-10 63.7 2.8 82 158-243 20-146 (196)
236 2igt_A SAM dependent methyltra 97.6 3E-05 1E-09 68.9 3.5 85 160-245 153-275 (332)
237 1qam_A ERMC' methyltransferase 97.6 4E-05 1.4E-09 65.0 3.9 54 149-203 20-92 (244)
238 2h1r_A Dimethyladenosine trans 97.5 5.8E-05 2E-09 66.0 4.5 85 150-236 33-153 (299)
239 2ih2_A Modification methylase 97.5 8E-05 2.7E-09 68.1 5.5 81 160-243 39-165 (421)
240 3m6w_A RRNA methylase; rRNA me 97.5 3.7E-05 1.3E-09 71.2 2.4 88 158-246 99-233 (464)
241 2frx_A Hypothetical protein YE 97.4 0.00013 4.4E-09 68.0 5.6 87 160-246 117-250 (479)
242 2efj_A 3,7-dimethylxanthine me 97.4 0.00037 1.3E-08 62.8 7.3 105 192-296 135-290 (384)
243 2f8l_A Hypothetical protein LM 97.4 9.8E-05 3.4E-09 65.8 3.6 84 160-243 130-257 (344)
244 1sqg_A SUN protein, FMU protei 97.3 0.00018 6E-09 66.2 5.0 89 158-246 244-378 (429)
245 1m6e_X S-adenosyl-L-methionnin 97.3 0.0013 4.5E-08 58.7 10.3 106 191-296 124-278 (359)
246 2as0_A Hypothetical protein PH 97.3 5.1E-05 1.8E-09 69.0 0.9 85 160-244 217-337 (396)
247 2b78_A Hypothetical protein SM 97.3 8.3E-05 2.8E-09 67.4 2.3 85 159-243 211-332 (385)
248 1wxx_A TT1595, hypothetical pr 97.3 7.3E-05 2.5E-09 67.7 1.9 85 160-244 209-327 (382)
249 2yx1_A Hypothetical protein MJ 97.3 0.00011 3.9E-09 65.2 3.0 82 159-246 194-295 (336)
250 3ua3_A Protein arginine N-meth 97.3 0.00011 3.6E-09 70.7 2.9 112 121-239 377-531 (745)
251 1rjd_A PPM1P, carboxy methyl t 97.2 0.00066 2.3E-08 60.2 7.7 129 160-291 97-281 (334)
252 3m4x_A NOL1/NOP2/SUN family pr 97.2 0.00013 4.4E-09 67.4 3.1 89 158-246 103-238 (456)
253 3b73_A PHIH1 repressor-like pr 97.1 0.00019 6.5E-09 52.9 2.3 63 7-77 14-79 (111)
254 3c0k_A UPF0064 protein YCCW; P 97.1 0.00013 4.6E-09 66.3 1.8 84 159-243 219-340 (396)
255 1y0u_A Arsenical resistance op 97.1 0.0002 6.8E-09 51.3 2.3 55 8-72 33-87 (96)
256 3gru_A Dimethyladenosine trans 96.9 0.00075 2.6E-08 58.8 4.5 61 149-210 40-121 (295)
257 3v97_A Ribosomal RNA large sub 96.9 0.00018 6.2E-09 70.2 0.4 85 160-244 539-659 (703)
258 4dmg_A Putative uncharacterize 96.9 0.00061 2.1E-08 61.8 3.7 87 160-246 214-330 (393)
259 1uwv_A 23S rRNA (uracil-5-)-me 96.8 0.0013 4.5E-08 60.4 5.9 77 158-240 284-387 (433)
260 2heo_A Z-DNA binding protein 1 96.8 0.00026 8.9E-09 47.2 0.7 53 8-68 12-66 (67)
261 3ftd_A Dimethyladenosine trans 96.8 0.0013 4.5E-08 55.8 5.2 70 149-219 21-110 (249)
262 2jjq_A Uncharacterized RNA met 96.8 0.0011 3.8E-08 60.8 4.9 76 160-241 290-386 (425)
263 2qfm_A Spermine synthase; sper 96.8 0.00033 1.1E-08 62.5 1.2 84 160-243 188-315 (364)
264 3pqk_A Biofilm growth-associat 96.8 0.00079 2.7E-08 48.7 3.0 59 7-70 24-82 (102)
265 1xmk_A Double-stranded RNA-spe 96.7 0.00043 1.5E-08 47.6 1.4 59 9-73 14-74 (79)
266 3jth_A Transcription activator 96.7 0.00079 2.7E-08 48.2 2.8 59 7-70 24-82 (98)
267 1r7j_A Conserved hypothetical 96.7 0.0012 4.2E-08 47.1 3.7 57 10-76 12-68 (95)
268 2uyo_A Hypothetical protein ML 96.6 0.0027 9.2E-08 55.6 6.1 134 160-297 102-277 (310)
269 3o4f_A Spermidine synthase; am 96.6 0.00083 2.8E-08 58.2 2.8 84 159-243 82-199 (294)
270 3fut_A Dimethyladenosine trans 96.6 0.0014 4.6E-08 56.4 4.0 75 151-227 39-133 (271)
271 3df8_A Possible HXLR family tr 96.6 0.0011 3.8E-08 48.8 2.8 62 8-75 29-93 (111)
272 2hzt_A Putative HTH-type trans 96.6 0.0012 4E-08 48.3 2.9 63 9-75 17-82 (107)
273 3k0b_A Predicted N6-adenine-sp 96.6 0.0015 5.2E-08 59.2 4.2 69 175-243 269-351 (393)
274 3ldg_A Putative uncharacterize 96.5 0.0049 1.7E-07 55.6 7.1 95 148-243 183-344 (384)
275 3ldu_A Putative methylase; str 96.5 0.0025 8.6E-08 57.6 4.9 69 175-243 263-345 (385)
276 3iei_A Leucine carboxyl methyl 96.4 0.015 5E-07 51.4 9.6 133 160-298 90-281 (334)
277 2okc_A Type I restriction enzy 96.4 0.0011 3.7E-08 61.2 2.1 93 150-243 162-308 (445)
278 4a5n_A Uncharacterized HTH-typ 96.4 0.0029 9.8E-08 48.0 4.0 64 9-76 29-95 (131)
279 3mq0_A Transcriptional repress 96.4 0.001 3.5E-08 57.3 1.7 55 9-71 33-89 (275)
280 3r4k_A Transcriptional regulat 96.3 0.0016 5.6E-08 55.5 2.8 57 9-72 9-67 (260)
281 2kko_A Possible transcriptiona 96.3 0.0011 3.8E-08 48.5 1.5 59 7-70 26-84 (108)
282 1qgp_A Protein (double strande 96.3 0.00088 3E-08 45.9 0.6 56 8-69 16-75 (77)
283 3bt7_A TRNA (uracil-5-)-methyl 96.3 0.001 3.4E-08 59.9 1.1 75 161-243 214-327 (369)
284 3tqs_A Ribosomal RNA small sub 96.2 0.0021 7E-08 54.8 2.9 50 150-200 20-87 (255)
285 1qbj_A Protein (double-strande 96.2 0.0026 8.9E-08 43.9 2.6 61 8-74 12-76 (81)
286 3f6o_A Probable transcriptiona 96.2 0.0011 3.6E-08 49.4 0.6 60 7-71 19-78 (118)
287 3evf_A RNA-directed RNA polyme 96.1 0.0067 2.3E-07 51.7 5.4 37 204-240 141-182 (277)
288 2g7u_A Transcriptional regulat 96.1 0.0047 1.6E-07 52.5 4.2 58 9-75 17-76 (257)
289 2oqg_A Possible transcriptiona 96.1 0.0013 4.3E-08 48.4 0.5 61 7-72 22-82 (114)
290 2f2e_A PA1607; transcription f 96.0 0.003 1E-07 48.9 2.5 63 9-75 27-90 (146)
291 2o0y_A Transcriptional regulat 96.0 0.0046 1.6E-07 52.7 3.9 55 9-71 26-82 (260)
292 2jsc_A Transcriptional regulat 96.0 0.0018 6.2E-08 48.2 1.1 59 7-70 22-80 (118)
293 1oyi_A Double-stranded RNA-bin 96.0 0.0027 9.2E-08 43.7 1.8 61 5-71 16-76 (82)
294 1yyv_A Putative transcriptiona 95.9 0.0019 6.5E-08 49.1 1.0 63 9-75 38-103 (131)
295 1r1u_A CZRA, repressor protein 95.9 0.0022 7.5E-08 46.7 1.3 59 7-70 27-85 (106)
296 1r1t_A Transcriptional repress 95.9 0.0041 1.4E-07 46.6 2.6 58 8-70 48-105 (122)
297 2fsw_A PG_0823 protein; alpha- 95.9 0.0027 9.2E-08 46.3 1.6 63 9-75 28-93 (107)
298 2ia2_A Putative transcriptiona 95.9 0.0041 1.4E-07 53.2 3.0 54 9-71 24-79 (265)
299 3cuo_A Uncharacterized HTH-typ 95.9 0.0036 1.2E-07 44.6 2.2 60 7-71 25-85 (99)
300 1u2w_A CADC repressor, cadmium 95.8 0.003 1E-07 47.3 1.7 58 8-70 44-102 (122)
301 3f6v_A Possible transcriptiona 95.8 0.0023 7.8E-08 49.9 1.0 61 7-72 59-119 (151)
302 2xrn_A HTH-type transcriptiona 95.7 0.0033 1.1E-07 53.0 1.9 59 9-74 9-69 (241)
303 2fu4_A Ferric uptake regulatio 95.7 0.0043 1.5E-07 42.8 2.1 49 5-57 16-72 (83)
304 1z7u_A Hypothetical protein EF 95.6 0.0025 8.5E-08 46.9 0.6 63 9-75 25-90 (112)
305 2wte_A CSA3; antiviral protein 95.5 0.0047 1.6E-07 52.1 1.9 63 7-76 153-216 (244)
306 2htj_A P fimbrial regulatory p 95.5 0.0048 1.6E-07 42.5 1.5 56 10-69 4-61 (81)
307 1mkm_A ICLR transcriptional re 95.5 0.0052 1.8E-07 52.0 2.1 55 9-71 11-67 (249)
308 1tbx_A ORF F-93, hypothetical 95.4 0.0062 2.1E-07 43.5 2.2 66 6-76 8-78 (99)
309 1on2_A Transcriptional regulat 95.4 0.018 6E-07 43.9 4.8 50 18-75 21-70 (142)
310 2b9e_A NOL1/NOP2/SUN domain fa 95.4 0.019 6.5E-07 50.1 5.5 87 158-245 100-237 (309)
311 3uzu_A Ribosomal RNA small sub 95.4 0.0038 1.3E-07 53.8 0.9 49 151-200 34-102 (279)
312 2r6z_A UPF0341 protein in RSP 95.4 0.0084 2.9E-07 51.0 3.0 86 158-245 81-219 (258)
313 2y75_A HTH-type transcriptiona 95.2 0.02 6.9E-07 43.0 4.4 47 18-70 25-71 (129)
314 1ub9_A Hypothetical protein PH 95.1 0.0038 1.3E-07 44.4 0.2 63 7-73 17-82 (100)
315 3lwf_A LIN1550 protein, putati 95.1 0.025 8.5E-07 44.3 4.7 47 18-70 43-89 (159)
316 2k02_A Ferrous iron transport 95.0 0.0063 2.1E-07 42.5 0.9 42 11-56 7-49 (87)
317 1xn7_A Hypothetical protein YH 94.9 0.0071 2.4E-07 41.4 1.1 42 11-56 7-49 (78)
318 2x4h_A Hypothetical protein SS 94.8 0.03 1E-06 42.4 4.5 50 17-75 29-78 (139)
319 1ylf_A RRF2 family protein; st 94.8 0.024 8.4E-07 43.8 3.9 47 18-71 29-75 (149)
320 3t8r_A Staphylococcus aureus C 94.8 0.03 1E-06 43.0 4.3 48 18-71 27-74 (143)
321 3gcz_A Polyprotein; flavivirus 94.7 0.016 5.3E-07 49.5 2.9 95 148-243 79-202 (282)
322 3tgn_A ADC operon repressor AD 94.7 0.019 6.5E-07 43.7 3.1 66 6-75 38-105 (146)
323 2px2_A Genome polyprotein [con 94.7 0.05 1.7E-06 45.8 5.8 92 149-243 63-184 (269)
324 2obp_A Putative DNA-binding pr 94.6 0.047 1.6E-06 38.8 4.7 54 18-75 35-88 (96)
325 3v97_A Ribosomal RNA large sub 94.6 0.028 9.5E-07 54.8 4.7 56 188-243 283-348 (703)
326 2gxg_A 146AA long hypothetical 94.6 0.018 6E-07 43.8 2.6 65 7-75 38-104 (146)
327 3cdh_A Transcriptional regulat 94.6 0.019 6.4E-07 44.3 2.8 65 7-75 44-111 (155)
328 3k69_A Putative transcription 94.5 0.046 1.6E-06 42.9 5.0 48 18-71 27-74 (162)
329 1qyr_A KSGA, high level kasuga 94.5 0.015 5.3E-07 49.2 2.4 51 149-200 11-79 (252)
330 3ech_A MEXR, multidrug resista 94.5 0.01 3.6E-07 45.1 1.2 64 7-75 38-105 (142)
331 3hsr_A HTH-type transcriptiona 94.3 0.017 6E-07 43.8 1.9 65 7-75 37-104 (140)
332 3hrs_A Metalloregulator SCAR; 94.2 0.048 1.7E-06 44.8 4.8 51 17-75 18-68 (214)
333 3k0l_A Repressor protein; heli 94.2 0.019 6.5E-07 44.7 2.1 64 8-76 48-115 (162)
334 2fbh_A Transcriptional regulat 94.2 0.024 8.2E-07 43.0 2.6 65 7-75 38-106 (146)
335 4auk_A Ribosomal RNA large sub 94.1 0.069 2.4E-06 47.6 5.8 83 158-243 209-307 (375)
336 2pg4_A Uncharacterized protein 94.1 0.037 1.3E-06 39.0 3.4 53 19-75 30-83 (95)
337 3g3z_A NMB1585, transcriptiona 94.1 0.017 5.8E-07 44.0 1.6 65 7-75 32-99 (145)
338 2jt1_A PEFI protein; solution 94.1 0.039 1.3E-06 37.5 3.2 36 18-57 23-58 (77)
339 3bdd_A Regulatory protein MARR 94.0 0.018 6.3E-07 43.5 1.6 64 8-75 33-99 (142)
340 3c6k_A Spermine synthase; sper 94.0 0.018 6.2E-07 51.5 1.8 82 160-241 205-330 (381)
341 3bj6_A Transcriptional regulat 94.0 0.014 4.8E-07 44.8 0.9 64 8-75 42-108 (152)
342 3bja_A Transcriptional regulat 94.0 0.013 4.4E-07 44.2 0.6 64 8-75 35-101 (139)
343 3kp7_A Transcriptional regulat 93.9 0.021 7.1E-07 43.9 1.8 64 8-75 40-107 (151)
344 3oop_A LIN2960 protein; protei 93.9 0.016 5.5E-07 44.0 1.2 65 7-75 38-105 (143)
345 2a61_A Transcriptional regulat 93.9 0.016 5.4E-07 44.1 1.1 63 8-75 35-101 (145)
346 1jgs_A Multiple antibiotic res 93.9 0.015 5.3E-07 43.7 1.0 63 8-75 36-102 (138)
347 2nnn_A Probable transcriptiona 93.8 0.014 4.9E-07 44.0 0.7 64 8-75 40-106 (140)
348 2fa5_A Transcriptional regulat 93.8 0.019 6.5E-07 44.6 1.4 64 8-75 51-117 (162)
349 2bv6_A MGRA, HTH-type transcri 93.7 0.014 4.8E-07 44.2 0.5 64 8-75 39-105 (142)
350 1sfu_A 34L protein; protein/Z- 93.7 0.071 2.4E-06 35.8 3.8 54 9-68 18-72 (75)
351 3bpv_A Transcriptional regulat 93.7 0.016 5.4E-07 43.6 0.7 63 8-75 31-97 (138)
352 2pex_A Transcriptional regulat 93.7 0.019 6.6E-07 44.1 1.2 66 8-77 49-117 (153)
353 1xd7_A YWNA; structural genomi 93.7 0.059 2E-06 41.4 4.0 46 18-71 23-68 (145)
354 2dul_A N(2),N(2)-dimethylguano 93.7 0.04 1.4E-06 49.5 3.4 75 161-241 48-163 (378)
355 2lkp_A Transcriptional regulat 93.7 0.017 5.8E-07 42.6 0.8 47 7-57 33-79 (119)
356 3axs_A Probable N(2),N(2)-dime 93.7 0.017 5.8E-07 52.2 1.0 77 160-242 52-158 (392)
357 2qvo_A Uncharacterized protein 93.7 0.043 1.5E-06 38.7 2.9 51 20-75 31-81 (95)
358 4g6q_A Putative uncharacterize 93.6 0.16 5.4E-06 40.6 6.6 63 7-73 24-91 (182)
359 3s2w_A Transcriptional regulat 93.6 0.019 6.3E-07 44.6 1.0 65 7-75 51-118 (159)
360 3boq_A Transcriptional regulat 93.5 0.024 8.2E-07 43.9 1.6 65 7-75 48-116 (160)
361 1m6y_A S-adenosyl-methyltransf 93.5 0.036 1.2E-06 48.2 2.8 60 149-209 16-104 (301)
362 1p6r_A Penicillinase repressor 93.5 0.017 5.7E-07 39.7 0.5 55 3-57 6-61 (82)
363 3nrv_A Putative transcriptiona 93.5 0.02 7E-07 43.7 1.0 64 8-75 42-108 (148)
364 3ll7_A Putative methyltransfer 93.4 0.035 1.2E-06 50.4 2.5 50 160-209 93-169 (410)
365 3bro_A Transcriptional regulat 93.4 0.024 8.2E-07 42.8 1.3 64 8-75 36-104 (141)
366 3fm5_A Transcriptional regulat 93.3 0.031 1.1E-06 42.8 1.9 65 7-76 40-109 (150)
367 2rdp_A Putative transcriptiona 93.3 0.024 8E-07 43.4 1.2 64 8-75 44-110 (150)
368 1lj9_A Transcriptional regulat 93.2 0.02 7E-07 43.4 0.6 65 7-75 30-97 (144)
369 2h09_A Transcriptional regulat 93.1 0.11 3.8E-06 40.0 4.8 50 18-75 53-102 (155)
370 2k4m_A TR8_protein, UPF0146 pr 93.1 0.059 2E-06 41.4 3.0 75 160-243 35-122 (153)
371 2eth_A Transcriptional regulat 93.1 0.027 9.1E-07 43.4 1.1 64 8-75 46-112 (154)
372 2zkz_A Transcriptional repress 93.1 0.02 6.8E-07 40.9 0.4 59 7-71 28-87 (99)
373 1sfx_A Conserved hypothetical 93.1 0.025 8.4E-07 40.5 0.9 48 6-57 20-68 (109)
374 4hbl_A Transcriptional regulat 93.0 0.019 6.4E-07 44.1 0.1 65 7-75 42-109 (149)
375 3eld_A Methyltransferase; flav 92.9 0.2 6.7E-06 43.1 6.4 84 158-241 79-190 (300)
376 3e6m_A MARR family transcripti 92.9 0.022 7.4E-07 44.4 0.4 65 8-76 55-122 (161)
377 3cjn_A Transcriptional regulat 92.9 0.022 7.5E-07 44.3 0.4 64 8-75 54-120 (162)
378 2nyx_A Probable transcriptiona 92.9 0.021 7.3E-07 44.8 0.3 66 7-76 46-114 (168)
379 2qww_A Transcriptional regulat 92.9 0.031 1.1E-06 42.9 1.3 63 8-75 43-111 (154)
380 3f3x_A Transcriptional regulat 92.9 0.025 8.4E-07 43.0 0.6 63 7-75 38-104 (144)
381 2k4b_A Transcriptional regulat 92.7 0.025 8.6E-07 40.5 0.5 53 5-57 34-87 (99)
382 1s3j_A YUSO protein; structura 92.7 0.019 6.6E-07 44.2 -0.2 64 8-75 39-105 (155)
383 2hr3_A Probable transcriptiona 92.6 0.11 3.7E-06 39.4 4.1 64 8-75 37-104 (147)
384 2fbi_A Probable transcriptiona 92.6 0.021 7.3E-07 43.1 0.0 63 8-75 38-104 (142)
385 2p4w_A Transcriptional regulat 92.5 0.033 1.1E-06 45.5 1.0 61 7-71 16-80 (202)
386 2zwa_A Leucine carboxyl methyl 92.4 0.54 1.8E-05 45.6 9.6 107 188-298 188-309 (695)
387 1z91_A Organic hydroperoxide r 92.4 0.02 6.9E-07 43.6 -0.4 66 8-77 42-110 (147)
388 1bja_A Transcription regulator 92.4 0.04 1.4E-06 39.0 1.1 58 10-76 20-79 (95)
389 2fxa_A Protease production reg 92.2 0.029 1E-06 45.9 0.3 64 8-75 50-116 (207)
390 2ar0_A M.ecoki, type I restric 92.1 0.07 2.4E-06 50.3 2.9 53 190-243 244-313 (541)
391 2oyr_A UPF0341 protein YHIQ; a 92.0 0.047 1.6E-06 46.3 1.3 58 158-215 84-176 (258)
392 2pn6_A ST1022, 150AA long hypo 91.9 0.067 2.3E-06 41.1 2.1 46 7-56 4-50 (150)
393 2qlz_A Transcription factor PF 91.9 0.02 6.9E-07 47.8 -1.1 61 7-72 13-79 (232)
394 3nqo_A MARR-family transcripti 91.7 0.049 1.7E-06 43.7 1.1 66 7-76 42-112 (189)
395 3eco_A MEPR; mutlidrug efflux 91.6 0.14 4.7E-06 38.4 3.6 65 8-76 33-102 (139)
396 1ku9_A Hypothetical protein MJ 91.6 0.13 4.5E-06 38.9 3.4 42 11-56 31-74 (152)
397 3jw4_A Transcriptional regulat 91.4 0.12 4.2E-06 39.2 3.1 64 8-75 43-111 (148)
398 2frh_A SARA, staphylococcal ac 91.3 0.11 3.7E-06 38.7 2.6 64 9-76 40-108 (127)
399 1uly_A Hypothetical protein PH 91.3 0.092 3.1E-06 42.4 2.3 46 7-56 21-66 (192)
400 1okr_A MECI, methicillin resis 91.2 0.031 1.1E-06 41.3 -0.5 64 5-75 9-80 (123)
401 2d1h_A ST1889, 109AA long hypo 91.1 0.078 2.7E-06 37.8 1.6 37 17-57 34-70 (109)
402 1q1h_A TFE, transcription fact 91.1 0.049 1.7E-06 39.5 0.5 46 7-56 19-66 (110)
403 3r0a_A Putative transcriptiona 91.1 0.041 1.4E-06 41.0 0.0 46 7-56 27-75 (123)
404 2lnb_A Z-DNA-binding protein 1 90.9 0.096 3.3E-06 35.1 1.7 53 8-68 21-75 (80)
405 3s1s_A Restriction endonucleas 90.8 0.46 1.6E-05 46.7 7.0 86 158-243 319-466 (878)
406 2cfx_A HTH-type transcriptiona 90.8 0.07 2.4E-06 40.8 1.1 46 7-56 6-52 (144)
407 4b8x_A SCO5413, possible MARR- 90.7 0.12 4.2E-06 39.5 2.5 53 18-75 50-105 (147)
408 2w25_A Probable transcriptiona 90.6 0.077 2.6E-06 40.8 1.2 47 6-56 7-54 (150)
409 3u2r_A Regulatory protein MARR 90.6 0.15 5.1E-06 39.8 2.9 64 8-76 48-117 (168)
410 3deu_A Transcriptional regulat 90.5 0.23 7.8E-06 38.7 3.9 64 8-75 55-122 (166)
411 2fe3_A Peroxide operon regulat 90.5 0.21 7.2E-06 38.2 3.6 60 5-68 21-87 (145)
412 3i4p_A Transcriptional regulat 90.4 0.12 4.1E-06 40.4 2.1 46 7-56 4-50 (162)
413 4aik_A Transcriptional regulat 90.2 0.39 1.3E-05 36.8 5.0 63 9-76 34-101 (151)
414 2p5v_A Transcriptional regulat 89.9 0.09 3.1E-06 41.0 1.1 46 7-56 11-57 (162)
415 2esh_A Conserved hypothetical 89.7 0.14 4.8E-06 37.7 1.9 65 7-75 14-90 (118)
416 2fbk_A Transcriptional regulat 89.6 0.053 1.8E-06 43.0 -0.5 65 7-75 70-140 (181)
417 2dbb_A Putative HTH-type trans 89.4 0.089 3E-06 40.5 0.7 47 6-56 9-56 (151)
418 4fx0_A Probable transcriptiona 89.2 0.25 8.5E-06 37.8 3.1 52 18-75 51-105 (148)
419 2cyy_A Putative HTH-type trans 88.9 0.087 3E-06 40.6 0.3 46 7-56 8-54 (151)
420 2vxz_A Pyrsv_GP04; viral prote 88.8 0.19 6.5E-06 38.2 2.1 44 10-57 15-58 (165)
421 1mzb_A Ferric uptake regulatio 88.8 0.2 7E-06 37.8 2.3 60 5-68 17-84 (136)
422 2e1c_A Putative HTH-type trans 88.6 0.12 4E-06 40.9 0.8 46 7-56 28-74 (171)
423 3u1d_A Uncharacterized protein 88.6 0.46 1.6E-05 36.6 4.1 83 9-107 32-125 (151)
424 2cg4_A Regulatory protein ASNC 88.6 0.1 3.4E-06 40.2 0.4 46 7-56 9-55 (152)
425 2p8t_A Hypothetical protein PH 88.5 0.43 1.5E-05 38.5 4.2 50 17-75 28-77 (200)
426 2ia0_A Putative HTH-type trans 88.4 0.13 4.6E-06 40.5 1.1 46 7-56 18-64 (171)
427 2pjp_A Selenocysteine-specific 88.3 0.35 1.2E-05 35.7 3.2 57 7-71 8-64 (121)
428 3lkd_A Type I restriction-modi 88.3 0.62 2.1E-05 43.8 5.7 83 160-243 221-359 (542)
429 2o03_A Probable zinc uptake re 88.2 0.12 4.2E-06 38.8 0.7 59 5-67 10-75 (131)
430 1i1g_A Transcriptional regulat 88.0 0.11 3.8E-06 39.3 0.3 46 7-56 5-51 (141)
431 2vn2_A DNAD, chromosome replic 87.9 0.38 1.3E-05 35.9 3.3 33 20-56 52-84 (128)
432 1xma_A Predicted transcription 87.7 0.15 5.3E-06 39.1 1.0 65 7-75 42-118 (145)
433 3mwm_A ZUR, putative metal upt 87.6 0.22 7.6E-06 37.8 1.8 64 5-68 13-79 (139)
434 3p8z_A Mtase, non-structural p 87.6 1.6 5.4E-05 36.4 7.0 89 149-240 68-184 (267)
435 3cvo_A Methyltransferase-like 87.3 0.89 3E-05 36.9 5.4 76 160-242 30-154 (202)
436 3l7w_A Putative uncharacterize 87.3 0.17 5.7E-06 36.7 0.9 63 8-75 11-81 (108)
437 1fx7_A Iron-dependent represso 87.1 0.49 1.7E-05 39.1 3.8 47 21-75 26-72 (230)
438 1yg2_A Gene activator APHA; vi 86.9 0.24 8.3E-06 39.3 1.7 63 7-73 3-77 (179)
439 1v4r_A Transcriptional repress 86.7 0.42 1.4E-05 33.9 2.8 54 8-69 21-77 (102)
440 3maj_A DNA processing chain A; 86.6 0.44 1.5E-05 42.6 3.4 53 8-68 330-382 (382)
441 3khk_A Type I restriction-modi 86.5 0.22 7.6E-06 46.9 1.5 20 223-242 376-395 (544)
442 3i71_A Ethanolamine utilizatio 86.0 1.3 4.4E-05 27.7 4.3 44 18-70 17-60 (68)
443 3hhh_A Transcriptional regulat 86.0 0.3 1E-05 35.9 1.7 64 8-75 15-88 (116)
444 2qq9_A Diphtheria toxin repres 86.0 0.7 2.4E-05 38.1 4.2 47 21-75 26-72 (226)
445 3elk_A Putative transcriptiona 85.7 0.17 5.9E-06 37.2 0.3 66 7-76 15-90 (117)
446 2w57_A Ferric uptake regulatio 85.4 0.36 1.2E-05 37.2 2.0 64 5-68 16-83 (150)
447 2dk5_A DNA-directed RNA polyme 85.3 0.19 6.6E-06 35.2 0.4 47 6-56 20-69 (91)
448 3f8b_A Transcriptional regulat 85.2 0.32 1.1E-05 35.7 1.5 64 8-75 14-89 (116)
449 2g9w_A Conserved hypothetical 85.0 0.22 7.4E-06 37.7 0.6 54 4-57 7-62 (138)
450 3lkz_A Non-structural protein 85.0 2.5 8.7E-05 36.2 7.1 90 149-240 84-202 (321)
451 4esf_A PADR-like transcription 84.9 0.31 1.1E-05 35.8 1.4 64 8-75 13-86 (117)
452 1j5y_A Transcriptional regulat 84.8 0.61 2.1E-05 37.2 3.2 54 8-70 23-79 (187)
453 3cta_A Riboflavin kinase; stru 84.4 0.57 2E-05 38.6 2.9 54 18-76 26-79 (230)
454 3k2z_A LEXA repressor; winged 84.4 0.56 1.9E-05 37.7 2.8 35 18-56 23-57 (196)
455 2vz8_A Fatty acid synthase; tr 84.4 0.58 2E-05 52.0 3.7 81 204-295 1312-1392(2512)
456 2xig_A Ferric uptake regulatio 84.3 0.31 1.1E-05 37.5 1.2 60 5-68 26-92 (150)
457 1jhg_A Trp operon repressor; c 84.1 0.26 9.1E-06 35.2 0.6 39 6-48 45-83 (101)
458 4esb_A Transcriptional regulat 83.4 0.3 1E-05 35.8 0.7 65 7-75 10-84 (115)
459 1sd4_A Penicillinase repressor 83.1 0.18 6E-06 37.3 -0.7 53 5-57 9-62 (126)
460 2o0m_A Transcriptional regulat 82.9 0.24 8.3E-06 43.7 0.0 61 8-77 22-83 (345)
461 1p4x_A Staphylococcal accessor 82.6 0.35 1.2E-05 40.7 0.9 64 7-75 159-228 (250)
462 3r24_A NSP16, 2'-O-methyl tran 82.5 0.98 3.3E-05 38.8 3.6 81 158-243 107-218 (344)
463 1wg8_A Predicted S-adenosylmet 82.4 0.72 2.5E-05 39.4 2.7 51 148-199 11-77 (285)
464 2b0l_A GTP-sensing transcripti 82.4 0.68 2.3E-05 33.0 2.3 44 9-56 31-76 (102)
465 2v79_A DNA replication protein 81.8 1 3.4E-05 34.0 3.1 34 19-56 51-84 (135)
466 1bia_A BIRA bifunctional prote 81.7 1.1 3.8E-05 39.0 3.8 56 7-69 6-62 (321)
467 2qlz_A Transcription factor PF 80.5 0.71 2.4E-05 38.3 2.0 53 9-69 168-220 (232)
468 3eyy_A Putative iron uptake re 79.3 0.54 1.9E-05 35.9 0.9 64 5-68 18-83 (145)
469 3eyi_A Z-DNA-binding protein 1 78.4 1.1 3.9E-05 29.2 2.0 46 8-56 12-58 (72)
470 1cf7_A Protein (transcription 78.2 0.94 3.2E-05 30.5 1.7 37 17-56 28-64 (76)
471 2dql_A PEX protein; circadian 78.0 2.3 8E-05 30.9 4.0 61 11-75 27-99 (115)
472 3tqn_A Transcriptional regulat 77.1 2.9 9.8E-05 30.2 4.2 41 21-69 35-75 (113)
473 1hsj_A Fusion protein consisti 76.9 1.3 4.3E-05 40.7 2.8 63 8-75 406-474 (487)
474 3lmm_A Uncharacterized protein 76.7 1.1 3.7E-05 42.6 2.2 58 9-75 433-496 (583)
475 1z6r_A MLC protein; transcript 76.4 1 3.6E-05 40.4 2.0 45 9-57 19-64 (406)
476 2hoe_A N-acetylglucosamine kin 76.1 0.89 3E-05 40.5 1.5 63 6-72 20-87 (380)
477 3e6c_C CPRK, cyclic nucleotide 76.0 3.6 0.00012 33.7 5.2 42 19-69 177-218 (250)
478 3l9f_A Putative uncharacterize 75.3 2.2 7.7E-05 34.5 3.5 59 10-72 40-110 (204)
479 3rkx_A Biotin-[acetyl-COA-carb 75.0 1.5 5E-05 38.3 2.5 56 8-70 5-63 (323)
480 2zcw_A TTHA1359, transcription 74.2 2.7 9.4E-05 33.1 3.8 42 19-69 146-187 (202)
481 2oz6_A Virulence factor regula 74.2 2.7 9.2E-05 33.2 3.8 34 19-56 164-197 (207)
482 1p4x_A Staphylococcal accessor 74.1 2.3 7.8E-05 35.6 3.4 62 9-75 37-104 (250)
483 3dv8_A Transcriptional regulat 73.9 3.4 0.00012 32.9 4.3 42 19-69 169-210 (220)
484 1z05_A Transcriptional regulat 73.5 1.2 4E-05 40.4 1.6 45 9-57 42-87 (429)
485 2wk1_A NOVP; transferase, O-me 73.4 2.8 9.5E-05 35.8 3.8 52 188-243 189-245 (282)
486 2zfw_A PEX; five alpha-helices 73.4 1.9 6.6E-05 33.0 2.5 60 11-74 49-120 (148)
487 3e97_A Transcriptional regulat 72.7 3.8 0.00013 33.0 4.4 42 19-69 175-216 (231)
488 2xvc_A ESCRT-III, SSO0910; cel 72.7 0.87 3E-05 28.5 0.3 44 8-55 12-57 (59)
489 2gau_A Transcriptional regulat 72.4 3.8 0.00013 33.0 4.3 43 18-69 179-221 (232)
490 3neu_A LIN1836 protein; struct 72.3 4.2 0.00014 29.9 4.2 33 21-57 39-71 (125)
491 3ryp_A Catabolite gene activat 72.2 3.2 0.00011 32.8 3.8 34 19-56 167-200 (210)
492 3iwz_A CAP-like, catabolite ac 72.0 3.2 0.00011 33.3 3.8 34 19-56 187-220 (230)
493 2ek5_A Predicted transcription 71.8 4.9 0.00017 29.8 4.4 44 19-70 27-71 (129)
494 3d0s_A Transcriptional regulat 71.7 4.1 0.00014 32.7 4.4 42 19-69 177-218 (227)
495 3la7_A Global nitrogen regulat 71.5 4 0.00014 33.3 4.3 41 19-68 193-233 (243)
496 4ev0_A Transcription regulator 71.4 3.5 0.00012 32.7 3.9 42 19-69 163-204 (216)
497 3ri2_A Transcriptional regulat 71.0 2.7 9.2E-05 31.0 2.8 64 7-75 22-93 (123)
498 4ets_A Ferric uptake regulatio 70.7 2.1 7.3E-05 33.2 2.3 64 5-68 32-100 (162)
499 2e1n_A PEX, period extender; c 70.3 2.7 9.1E-05 31.7 2.7 61 11-75 39-111 (138)
500 1zyb_A Transcription regulator 70.0 4.4 0.00015 32.8 4.2 41 19-68 186-226 (232)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=2.6e-51 Score=372.13 Aligned_cols=285 Identities=21% Similarity=0.332 Sum_probs=247.2
Q ss_pred CccccccccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCCCC
Q 043063 3 DNECRDGGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEG 80 (301)
Q Consensus 3 ~~~a~~lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~~~ 80 (301)
+++|+||||||.|.+ +|+|++|||+++|+ +++.++||||+|+++|+|.+..++ .++.|++|+.++.+....++
T Consensus 25 L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~~~~-~~~~y~~t~~s~~~l~~~~~ 99 (353)
T 4a6d_A 25 LFAACELGVFDLLAEAPGPLDVAAVAAGVRA----SAHGTELLLDICVSLKLLKVETRG-GKAFYRNTELSSDYLTTVSP 99 (353)
T ss_dssp HHHHHHHTHHHHHHHSSSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECHHHHHHHSTTST
T ss_pred HHHHHHcCHHHHHhcCCCCCCHHHHHHhhCc----CHHHHHHHHHHHHHCCCEEEeccC-ccceeeCCHHHHHHhhcCCc
Confidence 578999999999964 79999999999999 899999999999999999865311 34589999999765544444
Q ss_pred CChhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccC---CCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCC
Q 043063 81 QSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHG---EPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDG 157 (301)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~ 157 (301)
.++.+++.+.. +..++.|.+|.+++++|+ ++|...+| .++|+++.++++....|+++|...+....+.+++.++
T Consensus 100 ~~~~~~~~~~~-~~~~~~~~~L~~~vr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~- 176 (353)
T 4a6d_A 100 TSQCSMLKYMG-RTSYRCWGHLADAVREGR-NQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWSVNGRSVLTAFD- 176 (353)
T ss_dssp TCCHHHHHHHH-HTHHHHHTTHHHHHHHTS-CCHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHHSSC-
T ss_pred hHHHHHHHHhC-HHHHHHHHHHHHHHhcCC-ChhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 68888887764 457889999999999998 78888876 4688888889999999999999988888889999997
Q ss_pred CCCcceEEeecCCce---------------eeeehhHHHhhCCC------CCceeEEeCCCCcc-CCcccEeeHhhhhcc
Q 043063 158 FKGVKRLVDVGGSAG---------------INFDLPEVVAEAPS------IPGVTHIGGDMFKS-IPAADAIFMKWVLTT 215 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~------~~ri~~~~gd~~~~-~p~~D~v~~~~vlh~ 215 (301)
|++..+|||||||+| +++|+|++++.+++ .+||+|++||||++ .|.+|+|+++++||+
T Consensus 177 ~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~~vlh~ 256 (353)
T 4a6d_A 177 LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILARVLHD 256 (353)
T ss_dssp GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEESSGGG
T ss_pred cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCCCceEEEeeeeccc
Confidence 999999999999994 78999999988753 48999999999987 667899999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEE
Q 043063 216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRL 295 (301)
Q Consensus 216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~ 295 (301)
|+|+++.+||++++++|+|||+|+|+|.+.+++.. .|. ....+|+.|++ ..+|++||.+||+++|+++||+.+++
T Consensus 257 ~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~-~~~--~~~~~dl~ml~--~~~g~ert~~e~~~ll~~AGf~~v~v 331 (353)
T 4a6d_A 257 WADGKCSHLLERIYHTCKPGGGILVIESLLDEDRR-GPL--LTQLYSLNMLV--QTEGQERTPTHYHMLLSSAGFRDFQF 331 (353)
T ss_dssp SCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSC-CCH--HHHHHHHHHHH--SSSCCCCCHHHHHHHHHHHTCEEEEE
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCC-CCH--HHHHHHHHHHH--hCCCcCCCHHHHHHHHHHCCCceEEE
Confidence 99999999999999999999999999999987643 222 34568999997 77999999999999999999999999
Q ss_pred EEccC
Q 043063 296 YRVLD 300 (301)
Q Consensus 296 ~~~~~ 300 (301)
+++..
T Consensus 332 ~~~~~ 336 (353)
T 4a6d_A 332 KKTGA 336 (353)
T ss_dssp ECCSS
T ss_pred EEcCC
Confidence 98753
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=3.3e-49 Score=359.74 Aligned_cols=293 Identities=34% Similarity=0.669 Sum_probs=254.2
Q ss_pred CccccccccccccCC---CCCCHHHHHHHhCC-CCCCCcc---cHHHHHHHHhcCcceeccccccC----CCeEecChhc
Q 043063 3 DNECRDGGKKGRLAN---TPLSASQILTRILP-SGGGDAE---NLQRILRLLTNYGVFSEHREFGG----ERKYSLTEIG 71 (301)
Q Consensus 3 ~~~a~~lglf~~L~~---g~~t~~ela~~~~~-~~~~~~~---~l~~lL~~L~~~g~l~~~~~~~~----~~~y~~t~~s 71 (301)
+++|++||||+.|.+ +|+|++|||+++|+ + +++ .|+||||+|+++|+|++....++ +++|++|+.+
T Consensus 37 l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~---~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s 113 (364)
T 3p9c_A 37 LKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAA---NPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVC 113 (364)
T ss_dssp HHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTT---CTTHHHHHHHHHHHHHHTTSEEEEEEECSSSCEEEEEEECGGG
T ss_pred HHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCC---CccchhhHHHHHHHHHhCCCEEEeccccCCCCcCCEEecCHHH
Confidence 578999999999975 69999999999995 3 455 99999999999999998621000 3689999999
Q ss_pred hhhhcCCCCCChhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHh
Q 043063 72 KSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSI 151 (301)
Q Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~ 151 (301)
+.|+.+.++.++++++.+..++.+++.|.+|.+++++|. ++|+..+|.++|+|+.++|+..+.|+++|...+....+.+
T Consensus 114 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~ 192 (364)
T 3p9c_A 114 KFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGG-IPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKL 192 (364)
T ss_dssp GGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCC-ChHHHhcCCCHHHHHHhCHHHHHHHHHHHHHhhHHHHHHH
Confidence 988877655689999887766778999999999999998 8999999999999999999999999999998877777788
Q ss_pred hhcCCCCCCcceEEeecCCce---------------eeeehhHHHhhCCCCCceeEEeCCCCccCCcccEeeHhhhhccC
Q 043063 152 LDGYDGFKGVKRLVDVGGSAG---------------INFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTW 216 (301)
Q Consensus 152 ~~~~~~~~~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~~p~~D~v~~~~vlh~~ 216 (301)
++.++.+++..+|||||||+| +++|+|.+++.+++.+||+|+.+|+++++|.+|+|+++++||+|
T Consensus 193 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D~v~~~~vlh~~ 272 (364)
T 3p9c_A 193 LELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDW 272 (364)
T ss_dssp HHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGS
T ss_pred HHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcCCCCCCCCEEEehHHhccC
Confidence 888855888899999999994 78999999999998899999999999888878999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEE
Q 043063 217 TDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLY 296 (301)
Q Consensus 217 ~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~ 296 (301)
+|+++.++|++++++|+|||+|+|.|.+.++.....+.......+|+.|++ ...+|++||.+||.++|+++||+.++++
T Consensus 273 ~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~-~~~~g~~rt~~e~~~ll~~AGF~~v~~~ 351 (364)
T 3p9c_A 273 SDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLA-HNPGGRERYEREFQALARGAGFTGVKST 351 (364)
T ss_dssp CHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHH-HCSSCCCCBHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHh-cccCCccCCHHHHHHHHHHCCCceEEEE
Confidence 999999999999999999999999999988764323333344568888884 3578999999999999999999999999
Q ss_pred EccC
Q 043063 297 RVLD 300 (301)
Q Consensus 297 ~~~~ 300 (301)
++..
T Consensus 352 ~~~~ 355 (364)
T 3p9c_A 352 YIYA 355 (364)
T ss_dssp EEET
T ss_pred EcCC
Confidence 8764
No 3
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=4.8e-48 Score=352.62 Aligned_cols=296 Identities=34% Similarity=0.644 Sum_probs=253.3
Q ss_pred CccccccccccccCC--C---CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccccc-C---CCeEecChhchh
Q 043063 3 DNECRDGGKKGRLAN--T---PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFG-G---ERKYSLTEIGKS 73 (301)
Q Consensus 3 ~~~a~~lglf~~L~~--g---~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~-~---~~~y~~t~~s~~ 73 (301)
+++|++||||+.|.+ | |+|++|||+++|..+|.+++.|+||||+|++.|+|++....+ . +++|++|+.++.
T Consensus 38 l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~ 117 (368)
T 3reo_A 38 LKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKF 117 (368)
T ss_dssp HHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTHHH
T ss_pred HHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEEecccCCCCcccceeCcCHHHHH
Confidence 578999999999975 4 599999999998422212349999999999999999862100 1 368999999998
Q ss_pred hhcCCCCCChhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhh
Q 043063 74 LVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILD 153 (301)
Q Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~ 153 (301)
|+.+..+.++++++.+..++.+++.|.+|.+++++|. ++|+..+|.++|+|+.++++..+.|+++|...+....+.+++
T Consensus 118 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~ 196 (368)
T 3reo_A 118 LTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGG-IPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILE 196 (368)
T ss_dssp HSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCS-CHHHHHSSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCC-CHHHHHhCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 8877655689999887766778899999999999998 899999999999999999999999999999887777788888
Q ss_pred cCCCCCCcceEEeecCCce---------------eeeehhHHHhhCCCCCceeEEeCCCCccCCcccEeeHhhhhccCCh
Q 043063 154 GYDGFKGVKRLVDVGGSAG---------------INFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTD 218 (301)
Q Consensus 154 ~~~~~~~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~~p~~D~v~~~~vlh~~~d 218 (301)
.++.+++..+|||||||+| +++|+|.+++.+++.+||+|+.+|+++++|.+|+|+++++||+|+|
T Consensus 197 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~~ 276 (368)
T 3reo_A 197 MYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSD 276 (368)
T ss_dssp TCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGBCH
T ss_pred hcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCCCCCCCCCCEEEEechhhcCCH
Confidence 8855888899999999994 6889999999999889999999999988887899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEc
Q 043063 219 DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV 298 (301)
Q Consensus 219 ~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~ 298 (301)
+++.++|++++++|+|||+|+|.|.+.++.....+.......+|+.|+. ...+|++||.+||+++|+++||+.+++.++
T Consensus 277 ~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~ 355 (368)
T 3reo_A 277 EHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLA-YNPGGKERTEKEFQALAMASGFRGFKVASC 355 (368)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHH-HSSBCCCCCHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHh-hcCCCccCCHHHHHHHHHHCCCeeeEEEEe
Confidence 9999999999999999999999999988664322333445678888885 235899999999999999999999999987
Q ss_pred cC
Q 043063 299 LD 300 (301)
Q Consensus 299 ~~ 300 (301)
..
T Consensus 356 ~~ 357 (368)
T 3reo_A 356 AF 357 (368)
T ss_dssp ET
T ss_pred CC
Confidence 64
No 4
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=9.8e-46 Score=335.09 Aligned_cols=278 Identities=24% Similarity=0.392 Sum_probs=245.3
Q ss_pred CccccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCCCCCC
Q 043063 3 DNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEGQS 82 (301)
Q Consensus 3 ~~~a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~~~~~ 82 (301)
+++|+++|||+.|.+||+|++|||+++|+ +++.++||||+|+++|+|++. +++|++|+.++.|..+.+ .+
T Consensus 39 l~~a~~lglf~~l~~g~~t~~elA~~~g~----~~~~l~rlLr~l~~~g~l~~~-----~~~y~~t~~s~~l~~~~~-~~ 108 (348)
T 3lst_A 39 LRAAAAVGVADHLVDGPRTPAELAAATGT----DADALRRVLRLLAVRDVVRES-----DGRFALTDKGAALRSDSP-VP 108 (348)
T ss_dssp HHHHHHHTGGGGGTTSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTEEEECTTTGGGSTTSS-SC
T ss_pred HHHHHHcCchhHhhCCCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEec-----CCEEecCHHHHHHhcCCC-cc
Confidence 57899999999999899999999999999 899999999999999999995 789999999998866543 57
Q ss_pred hhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCCCcc
Q 043063 83 YAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVK 162 (301)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 162 (301)
+.+++.+..++..+++|.+|++++++|. ++|+..+|.++|+|+.++++..+.|+++|...+....+.+++.++ +++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~ 186 (348)
T 3lst_A 109 ARAGILMFTDTMFWTMSHRVASALGPER-PAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAGD-FPATG 186 (348)
T ss_dssp SHHHHHHHTSHHHHHHHHTHHHHTCTTC-CCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHTTHHHHHHHSC-CCSSE
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhcCC-ChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHhhhhhHHHHHHhCC-ccCCc
Confidence 8888887666667899999999999998 789989998999999999999999999999888777888999996 99999
Q ss_pred eEEeecCCce---------------eeeehhHHHhhCCC-----CCceeEEeCCCCccCCcccEeeHhhhhccCChHHHH
Q 043063 163 RLVDVGGSAG---------------INFDLPEVVAEAPS-----IPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECK 222 (301)
Q Consensus 163 ~vlDvGgG~g---------------~~~Dlp~v~~~a~~-----~~ri~~~~gd~~~~~p~~D~v~~~~vlh~~~d~~~~ 222 (301)
+|||||||+| +++|+|.++...+. .+||+++.+|+++++|.+|+|+++++||+|+|+++.
T Consensus 187 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~ 266 (348)
T 3lst_A 187 TVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSV 266 (348)
T ss_dssp EEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHH
T ss_pred eEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCCCcEEEEehhccCCCHHHHH
Confidence 9999999995 68899988874321 368999999999778866999999999999999999
Q ss_pred HHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEc
Q 043063 223 LIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV 298 (301)
Q Consensus 223 ~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~ 298 (301)
++|++++++|+|||+|+|.|.+.++.... .....+|+.|+. ..+|+.||.+||.++|+++||+.+++.+.
T Consensus 267 ~~L~~~~~~LkpgG~l~i~e~~~~~~~~~----~~~~~~d~~~~~--~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 336 (348)
T 3lst_A 267 RILTNCRRVMPAHGRVLVIDAVVPEGNDA----HQSKEMDFMMLA--ARTGQERTAAELEPLFTAAGLRLDRVVGT 336 (348)
T ss_dssp HHHHHHHHTCCTTCEEEEEECCBCSSSSC----CHHHHHHHHHHH--TTSCCCCBHHHHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhhhcChhhhh--cCCCcCCCHHHHHHHHHHCCCceEEEEEC
Confidence 99999999999999999999988765321 123467888886 57899999999999999999999999884
No 5
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=1.1e-45 Score=337.13 Aligned_cols=278 Identities=23% Similarity=0.381 Sum_probs=247.1
Q ss_pred CccccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCe-EecChhchhhhcCCCCC
Q 043063 3 DNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERK-YSLTEIGKSLVTDAEGQ 81 (301)
Q Consensus 3 ~~~a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~-y~~t~~s~~l~~~~~~~ 81 (301)
+++|+++|||+.|.+||+|++|||+++|+ +++.++|||++|++.|+|+++ ++++ |++|+.++.|..+.+ .
T Consensus 55 l~~a~~lglf~~l~~g~~t~~eLA~~~g~----~~~~l~rlLr~L~~~g~l~~~----~~~~~y~~t~~s~~L~~~~~-~ 125 (369)
T 3gwz_A 55 IHVAVELGVPELLQEGPRTATALAEATGA----HEQTLRRLLRLLATVGVFDDL----GHDDLFAQNALSAVLLPDPA-S 125 (369)
T ss_dssp HHHHHHHTTGGGGTTSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSSEEC----SSTTEEECCHHHHTTSCCTT-C
T ss_pred HHHHHHCChhhhhcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCCEEEe----CCCceEecCHHHHHHhcCCc-h
Confidence 57899999999999899999999999999 899999999999999999997 3778 999999998865543 5
Q ss_pred ChhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCCCc
Q 043063 82 SYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGV 161 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 161 (301)
++.+++.+..++..++.|.+|.+++++|. ++|...+|.++|+|+.++++..+.|+++|...+....+.+++.++ +++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~ 203 (369)
T 3gwz_A 126 PVATDARFQAAPWHWRAWEQLTHSVRTGE-ASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD-FSGA 203 (369)
T ss_dssp HHHHHHHHHHSHHHHHHHHTHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CTTC
T ss_pred hHHHHHHHcCCHHHHHHHHhHHHHHhCCC-ChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHHhhhHHHHHHhCC-CccC
Confidence 78888887766557889999999999998 789888998999999999999999999999887777788888896 8889
Q ss_pred ceEEeecCCce---------------eeeehhHHHhhCCC-------CCceeEEeCCCCccCCc-ccEeeHhhhhccCCh
Q 043063 162 KRLVDVGGSAG---------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKSIPA-ADAIFMKWVLTTWTD 218 (301)
Q Consensus 162 ~~vlDvGgG~g---------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~~p~-~D~v~~~~vlh~~~d 218 (301)
.+|||||||+| +++|+|.+++.+++ .+||+|+.+|+++++|. +|+|+++++||+|+|
T Consensus 204 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~d 283 (369)
T 3gwz_A 204 ATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDD 283 (369)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEEESCGGGSCH
T ss_pred cEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEhhhhhccCCH
Confidence 99999999995 67899998888764 47999999999977884 799999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEc
Q 043063 219 DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV 298 (301)
Q Consensus 219 ~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~ 298 (301)
+++.++|++++++|+|||+|+|.|.+.++... +. ...+|+.|+. ..+|++||.+||.++|+++||+++++.++
T Consensus 284 ~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~--~~---~~~~d~~~~~--~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 356 (369)
T 3gwz_A 284 DDVVRILRRIATAMKPDSRLLVIDNLIDERPA--AS---TLFVDLLLLV--LVGGAERSESEFAALLEKSGLRVERSLPC 356 (369)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCC--HH---HHHHHHHHHH--HHSCCCBCHHHHHHHHHTTTEEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCC--Cc---hhHhhHHHHh--hcCCccCCHHHHHHHHHHCCCeEEEEEEC
Confidence 99999999999999999999999999887632 22 4577888886 67899999999999999999999999984
No 6
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=4.5e-46 Score=335.17 Aligned_cols=277 Identities=22% Similarity=0.297 Sum_probs=243.1
Q ss_pred CccccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCCCCCC
Q 043063 3 DNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEGQS 82 (301)
Q Consensus 3 ~~~a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~~~~~ 82 (301)
+++|+++|||+.|.+||+|++|||+++|+ +++.++|||++|++.|++.++ +++.|++|+.++.|..+.. .+
T Consensus 22 l~~a~~lglf~~l~~g~~t~~elA~~~~~----~~~~l~rlLr~l~~~gl~~~~----~~~~y~~t~~s~~l~~~~~-~~ 92 (332)
T 3i53_A 22 VRVAATLRVADHIAAGHRTAAEIASAAGA----HADSLDRLLRHLVAVGLFTRD----GQGVYGLTEFGEQLRDDHA-AG 92 (332)
T ss_dssp HHHHHHHTHHHHHHTTCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC----TTSBEEECTTGGGGSTTCT-TC
T ss_pred HHHHHHcChHHHHhcCCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEec----CCCeEEcCHhHHHHhcCCc-hh
Confidence 57899999999999899999999999999 899999999999999999997 4789999999998865543 57
Q ss_pred hhHHHHhhcchhHH-hhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCCCc
Q 043063 83 YAPYVLQHHQDALM-SAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGV 161 (301)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 161 (301)
+.+++.+..++..+ +.|.+|.+++++|. ++|+..+|.++|+|+.++++..+.|+++|...+....+.+++.++ +++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~ 170 (332)
T 3i53_A 93 KRKWLDMNSAVGRGDLGFVELAHSIRTGQ-PAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD-WAAL 170 (332)
T ss_dssp CHHHHCTTSHHHHHGGGGGGHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGGGSSC-CGGG
T ss_pred HHHHHHHcCCHhHHHHHHHHhHHHHhcCC-CHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhHHHHHHhCC-CCCC
Confidence 88888776554456 89999999999998 789888898899999999999999999999877766778888886 8888
Q ss_pred ceEEeecCCce---------------eeeehhHHHhhCCC-------CCceeEEeCCCCccCC-cccEeeHhhhhccCCh
Q 043063 162 KRLVDVGGSAG---------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKSIP-AADAIFMKWVLTTWTD 218 (301)
Q Consensus 162 ~~vlDvGgG~g---------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~~p-~~D~v~~~~vlh~~~d 218 (301)
.+|||||||+| +++|+|.+++.+++ .+||+|+.+|+++++| .+|+|+++++||+|+|
T Consensus 171 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~~ 250 (332)
T 3i53_A 171 GHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDD 250 (332)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEESCGGGSCH
T ss_pred CEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEehhhccCCH
Confidence 99999999995 67899999888764 3799999999997788 4799999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEc
Q 043063 219 DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV 298 (301)
Q Consensus 219 ~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~ 298 (301)
+++.++|++++++|+|||+|+|.|.+.++. . + ...+|+.|+. ..+|+.||.+||.++|+++||+.+++.++
T Consensus 251 ~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~--~----~~~~d~~~~~--~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 321 (332)
T 3i53_A 251 LSAVAILRRCAEAAGSGGVVLVIEAVAGDE-H--A----GTGMDLRMLT--YFGGKERSLAELGELAAQAGLAVRAAHPI 321 (332)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEECCCC------C----CHHHHHHHHH--HHSCCCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeecCCCC-C--c----cHHHHHHHHh--hCCCCCCCHHHHHHHHHHCCCEEEEEEEC
Confidence 999999999999999999999999988754 2 1 2367888876 67899999999999999999999999986
Q ss_pred c
Q 043063 299 L 299 (301)
Q Consensus 299 ~ 299 (301)
.
T Consensus 322 ~ 322 (332)
T 3i53_A 322 S 322 (332)
T ss_dssp S
T ss_pred C
Confidence 4
No 7
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=2.2e-44 Score=327.41 Aligned_cols=290 Identities=29% Similarity=0.473 Sum_probs=246.3
Q ss_pred CccccccccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccc-----ccC-CCeEecChhchhh
Q 043063 3 DNECRDGGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHRE-----FGG-ERKYSLTEIGKSL 74 (301)
Q Consensus 3 ~~~a~~lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~-----~~~-~~~y~~t~~s~~l 74 (301)
+++|+++|||+.|.. +|+|++|||+++|+ +|.+++.++||||+|++.|+|++..+ ++. +++|++|+.++.|
T Consensus 27 l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~g~~~~~y~~t~~s~~l 105 (358)
T 1zg3_A 27 LKSAMELGIADAIHNHGKPMTLSELASSLKL-HPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLL 105 (358)
T ss_dssp HHHHHHHTHHHHHHHHTSCEEHHHHHHHTTC-CTTTHHHHHHHHHHHHHTTSEEEEEECCSSSSCCCEEEEEECHHHHTT
T ss_pred HHHHHHCChHhHHhhcCCCcCHHHHHHhcCC-CCcchHHHHHHHHHHhhCCcEEEecccccccCCCCCCEEeCCHHHHHH
Confidence 578999999999985 49999999999999 33357899999999999999998610 000 3689999999988
Q ss_pred hcCCCCCChhHHHHhhcchhHHhhhhhHHHhhcCC--CCChhhhccCCCchhccccCchHHH--HHHHHHhcCCccchHH
Q 043063 75 VTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDP--TIEPFVKVHGEPTYSYYGKMPEMNG--LMRKAMSGVSVPFMTS 150 (301)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g--~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~m~~~~~~~~~~ 150 (301)
+.+.+ .++++++.+..++.+++.|.+|++++++| . ++|+..+|.++|+|+.++|+..+ .|+++|...+.... .
T Consensus 106 ~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~-~~~~~~~g~~~~~~~~~~p~~~~~~~f~~~m~~~~~~~~-~ 182 (358)
T 1zg3_A 106 ISGKP-TCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQ-TLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK-L 182 (358)
T ss_dssp CTTST-TCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCC-CHHHHHHSSCHHHHHTSGGGHHHHHHHHHHHHHHHHTHH-H
T ss_pred hCCCC-ccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCC-ChHHHHhCCCHHHHHhcChhhhhHHHHHHHHhcccHHHH-H
Confidence 87654 57899998876667789999999999998 5 78988889999999999999999 99999987766555 6
Q ss_pred hhhcCC-CCCCcceEEeecCCce---------------eeeehhHHHhhCCCCCceeEEeCCCCccCCcccEeeHhhhhc
Q 043063 151 ILDGYD-GFKGVKRLVDVGGSAG---------------INFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLT 214 (301)
Q Consensus 151 ~~~~~~-~~~~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~~p~~D~v~~~~vlh 214 (301)
+++.++ .+++..+|||||||+| +++|+|.+++.+++.++|+++.+|+++++|.+|+|+++++||
T Consensus 183 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~vlh 262 (358)
T 1zg3_A 183 VLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLH 262 (358)
T ss_dssp HHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEECCTTTCCCCCSEEEEESCGG
T ss_pred HHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeCccCCCCCCceEEEEccccc
Confidence 777772 2777889999999995 678999999999887789999999998888889999999999
Q ss_pred cCChHHHHHHHHHHHHhCCC---CCEEEEeccccCCCCCChH-HhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCC
Q 043063 215 TWTDDECKLIMENCYKAIPA---GGKLIACEPVLPDDSNESQ-RTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF 290 (301)
Q Consensus 215 ~~~d~~~~~iL~~~~~aL~p---gg~lli~e~~~~~~~~~~~-~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf 290 (301)
+|+|+++.++|++++++|+| ||+|+|.|.+.++... .| .......+|+.|+. ..+|+.||.++|.++|+++||
T Consensus 263 ~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~-~~~~~~~~~~~d~~~~~--~~~g~~~t~~e~~~ll~~aGf 339 (358)
T 1zg3_A 263 DWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSD-DRGLTELQLDYDLVMLT--MFLGKERTKQEWEKLIYDAGF 339 (358)
T ss_dssp GSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCS-CHHHHHHHHHHHHHHHH--HHSCCCEEHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCc-cchhhhHHHhhCHHHhc--cCCCCCCCHHHHHHHHHHcCC
Confidence 99999999999999999999 9999999999876532 21 12245567888875 668999999999999999999
Q ss_pred CceEEEEcc
Q 043063 291 PHLRLYRVL 299 (301)
Q Consensus 291 ~~~~~~~~~ 299 (301)
+.+++.++.
T Consensus 340 ~~~~~~~~~ 348 (358)
T 1zg3_A 340 SSYKITPIS 348 (358)
T ss_dssp CEEEEEEET
T ss_pred CeeEEEecC
Confidence 999998864
No 8
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=9.3e-44 Score=324.89 Aligned_cols=294 Identities=34% Similarity=0.610 Sum_probs=235.6
Q ss_pred CccccccccccccCC-C-C---CCHHHHHHHhCC--CCCCCcccHHHHHHHHhcCcceecccccc-C---CCeEecChhc
Q 043063 3 DNECRDGGKKGRLAN-T-P---LSASQILTRILP--SGGGDAENLQRILRLLTNYGVFSEHREFG-G---ERKYSLTEIG 71 (301)
Q Consensus 3 ~~~a~~lglf~~L~~-g-~---~t~~ela~~~~~--~~~~~~~~l~~lL~~L~~~g~l~~~~~~~-~---~~~y~~t~~s 71 (301)
+++|+++|||+.|.. | | +|++|||+++|+ ++|.+++.++||||+|++.|+|++....+ . +++|++|+.+
T Consensus 41 l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s 120 (372)
T 1fp1_D 41 LNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVG 120 (372)
T ss_dssp HHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTG
T ss_pred HHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEecccccCCCCcCCeEecCHHH
Confidence 578999999999986 5 7 999999999998 13436789999999999999999861000 1 3589999999
Q ss_pred hhhhcCCCCCChhHHHHhhcchhHHhhhhhHHHhhcCC-CCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHH
Q 043063 72 KSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDP-TIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTS 150 (301)
Q Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~ 150 (301)
+.|+.+.+..++++++.+..++.+++.|.+|++++++| . ++|+..+|.++|+|+.++|+..+.|+++|...+....+.
T Consensus 121 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~ 199 (372)
T 1fp1_D 121 KYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDI-DLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKR 199 (372)
T ss_dssp GGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC---------------CCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCC-ChhHHHhCCCHHHHHHhCHHHHHHHHHHHHhhhHHHHHH
Confidence 98876643247889988776666788999999999998 6 789888899999999999999999999998877766778
Q ss_pred hhhcCCCCCCcceEEeecCCce---------------eeeehhHHHhhCCCCCceeEEeCCCCccCCcccEeeHhhhhcc
Q 043063 151 ILDGYDGFKGVKRLVDVGGSAG---------------INFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTT 215 (301)
Q Consensus 151 ~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~~p~~D~v~~~~vlh~ 215 (301)
+++.++.+++..+|||||||+| +++|+|.+++.+++.++|+++.+|+++++|.+|+|+++++||+
T Consensus 200 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~~lh~ 279 (372)
T 1fp1_D 200 MLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHN 279 (372)
T ss_dssp HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGG
T ss_pred HHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEEeCCcccCCCCCCEEEEeccccc
Confidence 8888854788899999999995 6779999999998888999999999988887999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEE
Q 043063 216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRL 295 (301)
Q Consensus 216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~ 295 (301)
|+|+++.++|++++++|+|||+|+|.|.+.++.............+|+.|+. ..+|+.||.++|.++|+++||+++++
T Consensus 280 ~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~t~~e~~~ll~~aGf~~~~~ 357 (372)
T 1fp1_D 280 WSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI--TVGGRERTEKQYEKLSKLSGFSKFQV 357 (372)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHH--HHSCCCEEHHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHh--ccCCccCCHHHHHHHHHHCCCceEEE
Confidence 9999999999999999999999999999887653211111134567887775 55789999999999999999999999
Q ss_pred EEcc
Q 043063 296 YRVL 299 (301)
Q Consensus 296 ~~~~ 299 (301)
.++.
T Consensus 358 ~~~~ 361 (372)
T 1fp1_D 358 ACRA 361 (372)
T ss_dssp EEEE
T ss_pred EEcC
Confidence 8854
No 9
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=8.7e-44 Score=320.44 Aligned_cols=276 Identities=24% Similarity=0.373 Sum_probs=240.9
Q ss_pred CccccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCCCCCC
Q 043063 3 DNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEGQS 82 (301)
Q Consensus 3 ~~~a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~~~~~ 82 (301)
+++|+++|||+.|.++|.|++|||+++|+ +++.++|+|++|++.|+|++. +++.|++|+.++.|. +.+ .+
T Consensus 25 l~~~~~lgi~~~l~~~~~t~~ela~~~~~----~~~~l~r~Lr~L~~~g~l~~~----~~~~y~~t~~s~~l~-~~~-~~ 94 (334)
T 2ip2_A 25 VYVATRLGLADLIESGIDSDETLAAAVGS----DAERIHRLMRLLVAFEIFQGD----TRDGYANTPTSHLLR-DVE-GS 94 (334)
T ss_dssp HHHHHHTTHHHHHHTTCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----TTTEEEECHHHHTTS-SST-TC
T ss_pred HHHHHHcCcHHHHhCCCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCceEec----CCCeEecCHHHHHHh-CCC-cc
Confidence 46899999999998899999999999999 899999999999999999998 368999999998887 432 57
Q ss_pred hhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCCCcc
Q 043063 83 YAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVK 162 (301)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 162 (301)
+.+++.+..++.. +.|.+|++++++|. ++|+..+|.++|+|+.++++..+.|+++| ..+....+.+++.++ +++ .
T Consensus 95 ~~~~~~~~~~~~~-~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~~~~~-~~~-~ 169 (334)
T 2ip2_A 95 FRDMVLFYGEEFH-AAWTPACEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLD-FRG-R 169 (334)
T ss_dssp SHHHHHHHTTHHH-HHTTTHHHHHHHCC-CHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHHHHSC-CTT-C
T ss_pred HHHHHHHhcCchh-hHHHHHHHHHhcCC-ChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHHHhCC-CCC-C
Confidence 8899887765444 89999999999998 89988889999999999999999999999 777777788888886 888 9
Q ss_pred eEEeecCCce---------------eeeehhHHHhhCCC-------CCceeEEeCCCCccCCc-ccEeeHhhhhccCChH
Q 043063 163 RLVDVGGSAG---------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKSIPA-ADAIFMKWVLTTWTDD 219 (301)
Q Consensus 163 ~vlDvGgG~g---------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~~p~-~D~v~~~~vlh~~~d~ 219 (301)
+|||||||+| +++|+|.+++.+++ .+||+++.+|+++++|. +|+|++++++|+|+++
T Consensus 170 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~ 249 (334)
T 2ip2_A 170 SFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEA 249 (334)
T ss_dssp EEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEEESCGGGCCHH
T ss_pred EEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEEchhccCCCHH
Confidence 9999999995 67899888877764 36899999999988776 5999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEcc
Q 043063 220 ECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVL 299 (301)
Q Consensus 220 ~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~ 299 (301)
++.++|++++++|+|||+|+|.|.+.++... + .....+|+.|+. ..+|+.||.++|.++++++||+.+++.++.
T Consensus 250 ~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~--~--~~~~~~~~~~~~--~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 323 (334)
T 2ip2_A 250 ASLRLLGNCREAMAGDGRVVVIERTISASEP--S--PMSVLWDVHLFM--ACAGRHRTTEEVVDLLGRGGFAVERIVDLP 323 (334)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEECCBCSSSC--C--HHHHHHHHHHHH--HHSCCCCBHHHHHHHHHHTTEEEEEEEEET
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEeccCCCCC--c--chhHHhhhHhHh--hCCCcCCCHHHHHHHHHHCCCceeEEEECC
Confidence 9999999999999999999999998876532 1 234567887875 567999999999999999999999998864
No 10
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=3.4e-43 Score=318.90 Aligned_cols=287 Identities=29% Similarity=0.469 Sum_probs=243.7
Q ss_pred CccccccccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCCCC
Q 043063 3 DNECRDGGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEG 80 (301)
Q Consensus 3 ~~~a~~lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~~~ 80 (301)
+++|+++|||+.|.. +|.|++|||+++|+ +|.+++.++||||+|++.|+|++.++ +++.|++|+.++.|+.+.+
T Consensus 33 l~~a~~lgif~~L~~~~~~~t~~ela~~~~~-~~~~~~~l~rlLr~L~~~gll~~~~~--~~~~y~~t~~s~~L~~~~~- 108 (352)
T 1fp2_A 33 LKWAVEMNIPNIIQNHGKPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEIITK--EEESYALTVASELLVRGSD- 108 (352)
T ss_dssp HHHHHHTTHHHHHHHHTSCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEEES--SSEEEEECHHHHTTSTTSS-
T ss_pred HHHHHHCChhhhhhhcCCCccHHHHHHHhCc-CCCChHHHHHHHHHHHhCCeEEEecC--CCCeEeCCHHHHHHhCCCC-
Confidence 478999999999985 59999999999999 23247799999999999999998710 1579999999998886654
Q ss_pred CChhHHHHhhcchhHHhhhhhHHHhhc-CCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcC--CC
Q 043063 81 QSYAPYVLQHHQDALMSAWPLVHEAIL-DPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGY--DG 157 (301)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~l~-~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~--~~ 157 (301)
.++++++.+..++.+++.|.+|+++++ +|. ++|+..+|.++|+|+.++|+..+.|+++|...+....+. ++.+ +
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~- 185 (352)
T 1fp2_A 109 LCLAPMVECVLDPTLSGSYHELKKWIYEEDL-TLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFV- 185 (352)
T ss_dssp SCCHHHHHHHTCHHHHHGGGGHHHHHTCSSC-CHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHH-HHTCHHH-
T ss_pred ccHHHHHHHhcCchHHHHHHHHHHHHHhcCC-ChHHHHcCCCHHHHHHhChHHHHHHHHHHHhcchhhhhH-HHhcccc-
Confidence 578999887766667889999999999 787 899988899999999999999999999999887766566 6777 4
Q ss_pred CCCcceEEeecCCce---------------eeeehhHHHhhCCCCCceeEEeCCCCccCCcccEeeHhhhhccCChHHHH
Q 043063 158 FKGVKRLVDVGGSAG---------------INFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECK 222 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~~p~~D~v~~~~vlh~~~d~~~~ 222 (301)
+++..+|||||||+| +++|+|.+++.+++.++|+++.+|+++++|.+|+|+++++||+|+|+++.
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~ 265 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCL 265 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHH
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccccCCCCCccEEEeehhhccCCHHHHH
Confidence 778899999999995 68899999999988778999999999888888999999999999999999
Q ss_pred HHHHHHHHhCCC---CCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEcc
Q 043063 223 LIMENCYKAIPA---GGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVL 299 (301)
Q Consensus 223 ~iL~~~~~aL~p---gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~ 299 (301)
++|++++++|+| ||+|+|.|.+.++.............+|+.|+. .+|+.||.++|.++|+++||+.+++.++.
T Consensus 266 ~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~---~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 342 (352)
T 1fp2_A 266 RILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC---LNGKERNEEEWKKLFIEAGFQHYKISPLT 342 (352)
T ss_dssp HHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG---GTCCCEEHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh---ccCCCCCHHHHHHHHHHCCCCeeEEEecC
Confidence 999999999999 999999999887653211011234567777764 34889999999999999999999998854
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=8.1e-42 Score=311.02 Aligned_cols=276 Identities=18% Similarity=0.192 Sum_probs=221.5
Q ss_pred CccccccccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCCCC
Q 043063 3 DNECRDGGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEG 80 (301)
Q Consensus 3 ~~~a~~lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~~~ 80 (301)
+++|+++|||+.|.+ ||+|++|||+++|+ +++.++|||++|+++|+|++. +++|++|+.+++|+.++.
T Consensus 32 l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~----~~~~l~rlLr~l~~~g~l~~~-----~~~y~~t~~s~~L~~~~~- 101 (363)
T 3dp7_A 32 SRLMLKFGIFQLLSGKREGYTLQEISGRTGL----TRYAAQVLLEASLTIGTILLE-----EDRYVLAKAGWFLLNDKM- 101 (363)
T ss_dssp HHHHHHTTHHHHHHTCTTCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE-----TTEEEECHHHHHHHHCHH-
T ss_pred HHHHHHhCHHHHHHhcCCCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCeEec-----CCEEecccchHHhhCCCc-
Confidence 478999999999986 89999999999999 899999999999999999887 789999999998887642
Q ss_pred CChhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccC--CCchhccccCchHHH----HHHHHHhcCCccchHHhhhc
Q 043063 81 QSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHG--EPTYSYYGKMPEMNG----LMRKAMSGVSVPFMTSILDG 154 (301)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g--~~~~~~~~~~~~~~~----~~~~~m~~~~~~~~~~~~~~ 154 (301)
...++.+. .+..+++|.+|++++++|. +++...+| .++|+++.++|+..+ .|+.+|..... ..++..
T Consensus 102 --~~~~~~~~-~~~~~~~~~~L~~~lr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---~~~l~~ 174 (363)
T 3dp7_A 102 --ARVNMEFN-HDVNYQGLFHLEEALLNGR-PEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSF---GKALEI 174 (363)
T ss_dssp --HHHHHHHH-HHTTHHHHTTHHHHHHHSS-CGGGGGTCCCSSHHHHGGGSCHHHHHHHHHHHHHTTCCCC---HHHHHH
T ss_pred --ccchheee-cHHhhhhHHHHHHHHhcCC-CccccccCchHhHHHHHhhCHHHHHHHHHHHHHHhhhhhH---HHHHHH
Confidence 22333333 3457899999999999998 67777787 689999998988765 36666665432 234444
Q ss_pred CCCCCCcceEEeecCCce---------------eeeehhHHHhhCCC-------CCceeEEeCCCCcc---CCc-ccEee
Q 043063 155 YDGFKGVKRLVDVGGSAG---------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKS---IPA-ADAIF 208 (301)
Q Consensus 155 ~~~~~~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~---~p~-~D~v~ 208 (301)
+. ..+..+|||||||+| +++|+|.+++.+++ .+||+|+.+|++++ +|. +|+|+
T Consensus 175 ~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~ 253 (363)
T 3dp7_A 175 VF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVW 253 (363)
T ss_dssp HG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEE
T ss_pred hc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEE
Confidence 42 356789999999995 68899999888764 26899999999985 664 69999
Q ss_pred HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHh--hhhhhccHHHHhhhhccccccCHHHHHHHHH
Q 043063 209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRT--RALLEGDIFVMTIYRAKGKHMTEQEFKQLGF 286 (301)
Q Consensus 209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~--~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~ 286 (301)
++++||+|+|+++.++|++++++|+|||+|+|.|.+.++... .+.. ......++.|+. ..+++.||.+||.++|+
T Consensus 254 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~t~~e~~~ll~ 330 (363)
T 3dp7_A 254 MSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRY-ETASYCLTQISLYFTAMA--NGNSKMFHSDDLIRCIE 330 (363)
T ss_dssp EESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSS-HHHHHHHHHHHHHHHHSS--CSSCCSCCHHHHHHHHH
T ss_pred EechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccc-cchhhHHHHhhhhHHhhh--CCCCcccCHHHHHHHHH
Confidence 999999999999999999999999999999999998876532 1110 111233444443 55688999999999999
Q ss_pred hCCCCceEEEEcc
Q 043063 287 SAGFPHLRLYRVL 299 (301)
Q Consensus 287 ~aGf~~~~~~~~~ 299 (301)
++||+++++.+..
T Consensus 331 ~AGf~~v~~~~~~ 343 (363)
T 3dp7_A 331 NAGLEVEEIQDNI 343 (363)
T ss_dssp TTTEEESCCCCCB
T ss_pred HcCCeEEEEEeCC
Confidence 9999999988654
No 12
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=100.00 E-value=5.2e-41 Score=306.77 Aligned_cols=280 Identities=21% Similarity=0.270 Sum_probs=237.6
Q ss_pred CccccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC--eEecChhchhhhcCCCC
Q 043063 3 DNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER--KYSLTEIGKSLVTDAEG 80 (301)
Q Consensus 3 ~~~a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~--~y~~t~~s~~l~~~~~~ 80 (301)
+++|+++|||+.|.+||+|++|||+++|+ +++.++|+||+|++.|+|++. .++ .|++|+.++.|..+.+
T Consensus 33 l~~~~~l~i~~~l~~~~~t~~eLA~~~g~----~~~~l~r~Lr~L~~~Gll~~~----~~~~~~y~~t~~s~~l~~~~~- 103 (374)
T 1qzz_A 33 LRVAATLRLVDHLLAGADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGG----EKQGRPLRPTRLGMLLADGHP- 103 (374)
T ss_dssp HHHHHHTTHHHHHHTTCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECC----CC-CCCCEECTTGGGGSTTCT-
T ss_pred HHHHHHcChHHHHhCCCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCEEEe----CCCCeEEEEChHHHhhcCCCc-
Confidence 46899999999998899999999999999 899999999999999999986 366 8999999988876653
Q ss_pred CChhHHHHhhcchhHH-hhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCC
Q 043063 81 QSYAPYVLQHHQDALM-SAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFK 159 (301)
Q Consensus 81 ~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~ 159 (301)
.++.+++.+..++..+ ..|.+|.+++++|. ++|+..+|.++|+++.++++..+.|+++|........+.+++.++ ++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~ 181 (374)
T 1qzz_A 104 AQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WS 181 (374)
T ss_dssp TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CT
T ss_pred ccHHHHHHHcCChhhHHHHHHHHHHHHhcCC-ChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhhHhHHHHHHHhCC-CC
Confidence 5788888777544456 89999999999998 788888899999998889999999999999887777788888886 88
Q ss_pred CcceEEeecCCce---------------eeeehhHHHhhCCC-------CCceeEEeCCCCccCCc-ccEeeHhhhhccC
Q 043063 160 GVKRLVDVGGSAG---------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKSIPA-ADAIFMKWVLTTW 216 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~~p~-~D~v~~~~vlh~~ 216 (301)
+..+|||||||+| +++|+|.+++.+++ .+||+++.+|+++++|. .|+|++++++|+|
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~ 261 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNW 261 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGS
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEeccccCC
Confidence 8899999999995 57899888887764 25899999999987776 6999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEecc--ccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceE
Q 043063 217 TDDECKLIMENCYKAIPAGGKLIACEP--VLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLR 294 (301)
Q Consensus 217 ~d~~~~~iL~~~~~aL~pgg~lli~e~--~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~ 294 (301)
+++++.++|++++++|+|||+++|.|. +.++... ......+++.|+. ..+|+.++.++|.++|+++||++++
T Consensus 262 ~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~ll~~aGf~~~~ 335 (374)
T 1qzz_A 262 SDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD----RFFSTLLDLRMLT--FMGGRVRTRDEVVDLAGSAGLALAS 335 (374)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEECCH-----------HHHHHHHHHHHHH--HHSCCCCCHHHHHHHHHTTTEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCC----cchhhhcchHHHH--hCCCcCCCHHHHHHHHHHCCCceEE
Confidence 999999999999999999999999999 7765421 1234467777775 5678999999999999999999999
Q ss_pred EEEcc
Q 043063 295 LYRVL 299 (301)
Q Consensus 295 ~~~~~ 299 (301)
+.++.
T Consensus 336 ~~~~~ 340 (374)
T 1qzz_A 336 ERTSG 340 (374)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 98764
No 13
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=100.00 E-value=1.7e-40 Score=301.99 Aligned_cols=280 Identities=21% Similarity=0.348 Sum_probs=240.1
Q ss_pred CccccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCCCCCC
Q 043063 3 DNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEGQS 82 (301)
Q Consensus 3 ~~~a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~~~~~ 82 (301)
+++++++|||+.|.++|.|++|||+++|+ +++.++++|++|++.|+|.+. .+++|++|+.++.|..+.+ .+
T Consensus 36 l~~~~~l~i~~~l~~~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~~~~~----~~g~y~~t~~s~~l~~~~~-~~ 106 (360)
T 1tw3_A 36 VRTAATLRLVDHILAGARTVKALAARTDT----RPEALLRLIRHLVAIGLLEED----APGEFVPTEVGELLADDHP-AA 106 (360)
T ss_dssp HHHHHHTTHHHHHHTTCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----ETTEEEECTTGGGGSTTST-TC
T ss_pred HHHHHHhCHHHHHhCCCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEec----CCCeEEeCHHHHHHhcCCc-hh
Confidence 46789999999998899999999999999 899999999999999999996 3789999999988887653 57
Q ss_pred hhHHHHhhcchh-HHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCCCc
Q 043063 83 YAPYVLQHHQDA-LMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGV 161 (301)
Q Consensus 83 ~~~~~~~~~~~~-~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 161 (301)
+.+++.+...+. .+..|.+|.+.+++|. ++++..+|.++|+++.++++....|..+|........+.+++.++ +++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~l~~~~~-~~~~ 184 (360)
T 1tw3_A 107 QRAWHDLTQAVARADISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNV 184 (360)
T ss_dssp HHHHTCTTSHHHHHGGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTC
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHcCC-CHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHHHHhHHHHHHhCC-CccC
Confidence 888877665433 5689999999999998 788888899999998888999999999999887777788888886 8888
Q ss_pred ceEEeecCCce---------------eeeehhHHHhhCCC-------CCceeEEeCCCCccCCc-ccEeeHhhhhccCCh
Q 043063 162 KRLVDVGGSAG---------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKSIPA-ADAIFMKWVLTTWTD 218 (301)
Q Consensus 162 ~~vlDvGgG~g---------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~~p~-~D~v~~~~vlh~~~d 218 (301)
.+|||||||+| +++|+|.+++.+++ .+||+++.+|+++++|. +|+|++++++|+|++
T Consensus 185 ~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~ 264 (360)
T 1tw3_A 185 RHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPD 264 (360)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCH
T ss_pred cEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEcccccCCCH
Confidence 99999999995 56788888877653 24899999999987776 699999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEeccc-cCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEE
Q 043063 219 DECKLIMENCYKAIPAGGKLIACEPV-LPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR 297 (301)
Q Consensus 219 ~~~~~iL~~~~~aL~pgg~lli~e~~-~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~ 297 (301)
+++.++|++++++|+|||+++|.|.. .++... . .....+|+.|+. ..+++.+|.++|.++|+++||+++++.+
T Consensus 265 ~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~-~---~~~~~~~~~~~~--~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 338 (360)
T 1tw3_A 265 HDAVRILTRCAEALEPGGRILIHERDDLHENSF-N---EQFTELDLRMLV--FLGGALRTREKWDGLAASAGLVVEEVRQ 338 (360)
T ss_dssp HHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCC-S---HHHHHHHHHHHH--HHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCC-c---chhhhccHHHhh--hcCCcCCCHHHHHHHHHHCCCeEEEEEe
Confidence 99999999999999999999999998 654422 1 123456777775 5678999999999999999999999887
Q ss_pred cc
Q 043063 298 VL 299 (301)
Q Consensus 298 ~~ 299 (301)
+.
T Consensus 339 ~~ 340 (360)
T 1tw3_A 339 LP 340 (360)
T ss_dssp EE
T ss_pred CC
Confidence 64
No 14
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=100.00 E-value=1.3e-39 Score=293.13 Aligned_cols=276 Identities=14% Similarity=0.145 Sum_probs=233.1
Q ss_pred CccccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc-hhhhcCCCCC
Q 043063 3 DNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG-KSLVTDAEGQ 81 (301)
Q Consensus 3 ~~~a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s-~~l~~~~~~~ 81 (301)
+++|+++|||+.|.+||.|++|||+++|+ +++.++|||++|++.|+|++. +++|++|+.+ +.|..+.. .
T Consensus 23 l~~~~~l~i~~~l~~~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~l~~~-----~~~y~~t~~~~~~l~~~~~-~ 92 (335)
T 2r3s_A 23 IKAAVELNVFTAISQGIESSQSLAQKCQT----SERGMRMLCDYLVIIGFMTKQ-----AEGYRLTSDSAMFLDRQSK-F 92 (335)
T ss_dssp HHHHHHTTHHHHHTTSEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTEEEECHHHHHHTCTTST-T
T ss_pred HHHHHHcChHHHHhcCCCCHHHHHHHhCC----CchHHHHHHHHHHhcCCeEec-----CCEEecCHHHHHHhccCCc-H
Confidence 46899999999999899999999999999 899999999999999999986 7899999999 56765543 5
Q ss_pred ChhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCC--C
Q 043063 82 SYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGF--K 159 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~--~ 159 (301)
++++++.+..++..++.|.+|.+++++|. ++|+ + |+++.++++..+.|.+.|..........+++.++ + .
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 164 (335)
T 2r3s_A 93 YVGDAIEFLLSPMITNGFNDLTAAVLKGG-TAIS-----S-EGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVN-ENKI 164 (335)
T ss_dssp CCGGGHHHHTCHHHHGGGTTHHHHHHHTS-CCST-----T-TGGGSTTCTHHHHHHHHSGGGGHHHHHHHHHHHT-C--C
T ss_pred HHHHHHHHhcchhhHHHHHhHHHHHhcCC-CCCC-----C-cccccCCHHHHHHHHHHHHHHHhhhHHHHHHhcc-cccC
Confidence 78888888765567889999999999987 5554 3 7877788899999999998877766778888886 7 7
Q ss_pred CcceEEeecCCce---------------eeeehhHHHhhCCC-------CCceeEEeCCCCcc-CCc-ccEeeHhhhhcc
Q 043063 160 GVKRLVDVGGSAG---------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKS-IPA-ADAIFMKWVLTT 215 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~ 215 (301)
+..+|||||||+| +++|++.+++.+++ .+||+++.+|+++. +|. .|+|++++++|+
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l~~ 244 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHH 244 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCGGG
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchhcc
Confidence 8899999999995 57898888877764 25899999999975 666 699999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEE
Q 043063 216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRL 295 (301)
Q Consensus 216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~ 295 (301)
|+++++.++|++++++|+|||+++|.|...++... .+ .....+++.|+. ...+++.+|.++|.++++++||+.+++
T Consensus 245 ~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-~~--~~~~~~~~~~~~-~~~~~~~~t~~~~~~ll~~aGf~~~~~ 320 (335)
T 2r3s_A 245 FDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRI-TP--PDAAAFSLVMLA-TTPNGDAYTFAEYESMFSNAGFSHSQL 320 (335)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSS-CS--HHHHHHHHHHHH-HSSSCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcC-Cc--hHHHHHHHHHHe-eCCCCCcCCHHHHHHHHHHCCCCeeeE
Confidence 99999999999999999999999999998876532 12 234456777775 233789999999999999999999999
Q ss_pred EEccC
Q 043063 296 YRVLD 300 (301)
Q Consensus 296 ~~~~~ 300 (301)
.++..
T Consensus 321 ~~~~~ 325 (335)
T 2r3s_A 321 HSLPT 325 (335)
T ss_dssp ECCTT
T ss_pred EECCC
Confidence 88753
No 15
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=1.9e-39 Score=294.06 Aligned_cols=270 Identities=14% Similarity=0.186 Sum_probs=220.7
Q ss_pred CccccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCCCCCC
Q 043063 3 DNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEGQS 82 (301)
Q Consensus 3 ~~~a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~~~~~ 82 (301)
+++|+++|||+.|.+ |+|++|||+++|+ +++.++||||+|++.|+|++. +++|++|+.++.++....+.+
T Consensus 41 l~~a~~lgif~~l~~-~~t~~elA~~~~~----~~~~l~rlLr~L~~~gll~~~-----~~~y~~t~~s~~~l~~~~~~~ 110 (352)
T 3mcz_A 41 LHYAVADKLFDLTQT-GRTPAEVAASFGM----VEGKAAILLHALAALGLLTKE-----GDAFRNTALTERYLTTTSADY 110 (352)
T ss_dssp HHHHHHTTHHHHTTS-CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTEEEECHHHHHHHSTTCTTC
T ss_pred HHHHHHCChHHHhCC-CCCHHHHHHHhCc----ChHHHHHHHHHHHHCCCeEec-----CCeeecCHHHHhhccCCChhh
Confidence 578999999999986 9999999999999 899999999999999999998 579999999986544444467
Q ss_pred hhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCCC-c
Q 043063 83 YAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKG-V 161 (301)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~-~ 161 (301)
++.++.+. ...++.|.+|++++++|.+..|+.. .++.++++..+.|.++|...... +..+++.++ +++ .
T Consensus 111 ~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~------~~~~~~~~~~~~f~~~m~~~~~~-~~~~l~~~~-~~~~~ 180 (352)
T 3mcz_A 111 IGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQE------SRFAHDTRARDAFNDAMVRLSQP-MVDVVSELG-VFARA 180 (352)
T ss_dssp CHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHH------HHTTTCHHHHHHHHHHHHHHHHH-HHHHHHTCG-GGTTC
T ss_pred HHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccc------cccccCHHHHHHHHHHHHhhhhh-HHHHHHhCC-CcCCC
Confidence 87777654 2467899999999999874443321 12356888899999999873221 337888886 777 8
Q ss_pred ceEEeecCCce---------------eeeehhHHHhhCCC-------CCceeEEeCCCCcc---CCc-ccEeeHhhhhcc
Q 043063 162 KRLVDVGGSAG---------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKS---IPA-ADAIFMKWVLTT 215 (301)
Q Consensus 162 ~~vlDvGgG~g---------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~---~p~-~D~v~~~~vlh~ 215 (301)
.+|||||||+| +++|+|.+++.+++ .+||+++.+|++++ .|. +|+|+++++||+
T Consensus 181 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~ 260 (352)
T 3mcz_A 181 RTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHY 260 (352)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGGG
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccccc
Confidence 99999999995 67899988877653 26899999999986 344 599999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEE
Q 043063 216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRL 295 (301)
Q Consensus 216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~ 295 (301)
|+|+++.++|++++++|+|||+|+|.|.+.++... .+. ....+|+.|+. ...+|+.||.++|.++|+++||++++.
T Consensus 261 ~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-~~~--~~~~~~~~~~~-~~~~~~~~t~~e~~~ll~~aGf~~~~~ 336 (352)
T 3mcz_A 261 FDAREAREVIGHAAGLVKPGGALLILTMTMNDDRV-TPA--LSADFSLHMMV-NTNHGELHPTPWIAGVVRDAGLAVGER 336 (352)
T ss_dssp SCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSS-SSH--HHHHHHHHHHH-HSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCC-CCc--hHHHhhHHHHh-hCCCCCcCCHHHHHHHHHHCCCceeee
Confidence 99999999999999999999999999999887632 222 34567888875 345789999999999999999999885
Q ss_pred E
Q 043063 296 Y 296 (301)
Q Consensus 296 ~ 296 (301)
.
T Consensus 337 ~ 337 (352)
T 3mcz_A 337 S 337 (352)
T ss_dssp E
T ss_pred c
Confidence 3
No 16
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=100.00 E-value=5.3e-39 Score=292.04 Aligned_cols=267 Identities=16% Similarity=0.237 Sum_probs=222.6
Q ss_pred CccccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch-hhhcCCCC-
Q 043063 3 DNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK-SLVTDAEG- 80 (301)
Q Consensus 3 ~~~a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~-~l~~~~~~- 80 (301)
+++|+++|||+.|.++|.|++|||+++|+ +++.++||||+|++.|+|++. +++|++|+.+. ++..+. +
T Consensus 48 l~~a~~lgif~~L~~~~~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~-----~~~y~~t~~~~~~l~~~~-~~ 117 (359)
T 1x19_A 48 MKAAIELDLFSHMAEGPKDLATLAADTGS----VPPRLEMLLETLRQMRVINLE-----DGKWSLTEFADYMFSPTP-KE 117 (359)
T ss_dssp HHHHHHHTHHHHHTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTEEEECHHHHHHSSSSC-SB
T ss_pred HHHHHHcCcHHHHcCCCCCHHHHHHHhCc----ChHHHHHHHHHHHhCCCeEee-----CCeEecCHHHHHHhcCCC-CC
Confidence 47899999999999899999999999999 899999999999999999998 56999999764 555443 3
Q ss_pred --CChhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCch---HHHHHHHHHhcCCc-cchHHhhhc
Q 043063 81 --QSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPE---MNGLMRKAMSGVSV-PFMTSILDG 154 (301)
Q Consensus 81 --~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~m~~~~~-~~~~~~~~~ 154 (301)
.++++++.+. .+..++.|.+|++++++|. + |+++.++|+ ..+.|.++|..... ...+.+++.
T Consensus 118 ~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~-~----------~~~~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~ 185 (359)
T 1x19_A 118 PNLHQTPVAKAM-AFLADDFYMGLSQAVRGQK-N----------FKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEE 185 (359)
T ss_dssp TTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSC-C----------CCCSSCSSCCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccHHHHHHHH-HHHHHHHHHHHHHHHhcCC-C----------CcccccCchhhHHHHHHHHHHHHhccchhHHHHHHh
Confidence 4688888765 3467889999999999876 2 566777888 89999999999888 777888888
Q ss_pred CCCCCCcceEEeecCCce---------------eeeehhHHHhhCCC-------CCceeEEeCCCCcc-CCcccEeeHhh
Q 043063 155 YDGFKGVKRLVDVGGSAG---------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKS-IPAADAIFMKW 211 (301)
Q Consensus 155 ~~~~~~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~-~p~~D~v~~~~ 211 (301)
++ +++..+|||||||+| +++|+|.+++.+++ .+||+++.+|+++. +|.+|+|++++
T Consensus 186 ~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~ 264 (359)
T 1x19_A 186 AK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCR 264 (359)
T ss_dssp CC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEES
T ss_pred cC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEec
Confidence 86 888899999999995 67899888887763 35799999999975 66679999999
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccc----cCHHHHHHHHHh
Q 043063 212 VLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKH----MTEQEFKQLGFS 287 (301)
Q Consensus 212 vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~----rt~~e~~~~l~~ 287 (301)
+||+|+|+++.++|++++++|+|||+++|.|...++.. .+.. ...+ .|+. ...+|++ ++.++|.++|++
T Consensus 265 vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~--~~~~--~~~~--~~~~-~~~~g~~~~~~~t~~e~~~ll~~ 337 (359)
T 1x19_A 265 ILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE--NPNF--DYLS--HYIL-GAGMPFSVLGFKEQARYKEILES 337 (359)
T ss_dssp CGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTT--SCCH--HHHH--HHGG-GGGSSCCCCCCCCGGGHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCC--CchH--HHHH--HHHH-hcCCCCcccCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999887542 1111 1122 3332 1344777 999999999999
Q ss_pred CCCCceEEEEcc
Q 043063 288 AGFPHLRLYRVL 299 (301)
Q Consensus 288 aGf~~~~~~~~~ 299 (301)
+||+.+++.++.
T Consensus 338 aGf~~v~~~~~~ 349 (359)
T 1x19_A 338 LGYKDVTMVRKY 349 (359)
T ss_dssp HTCEEEEEEEET
T ss_pred CCCceEEEEecC
Confidence 999999988753
No 17
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.67 E-value=1.3e-16 Score=138.12 Aligned_cols=136 Identities=22% Similarity=0.317 Sum_probs=100.0
Q ss_pred CCCcceEEeecCCce-----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCcccEeeHhh
Q 043063 158 FKGVKRLVDVGGSAG-----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPAADAIFMKW 211 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g-----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~~D~v~~~~ 211 (301)
.++..+|||||||+| +++|+ |.+++.|++ ..+|+++.+|+.+. ++.+|+|++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 456789999999996 46798 888887754 36899999999764 55689999999
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhh--ccHHHH-h-----h------hhccccccC
Q 043063 212 VLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLE--GDIFVM-T-----I------YRAKGKHMT 277 (301)
Q Consensus 212 vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~--~d~~m~-~-----~------~~~~g~~rt 277 (301)
+||++++++...+|++++++|+|||++++.|....++.. ....... .++... + + ...--...|
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~---~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s 224 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAK---VGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDS 224 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHH---HHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBC
T ss_pred eeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHH---HHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCC
Confidence 999999988889999999999999999999988775521 1110000 000000 0 0 000012458
Q ss_pred HHHHHHHHHhCCCCceEEE
Q 043063 278 EQEFKQLGFSAGFPHLRLY 296 (301)
Q Consensus 278 ~~e~~~~l~~aGf~~~~~~ 296 (301)
.+++.++|+++||+.++++
T Consensus 225 ~~~~~~~L~~AGF~~ve~~ 243 (261)
T 4gek_A 225 VETHKARLHKAGFEHSELW 243 (261)
T ss_dssp HHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHcCCCeEEEE
Confidence 9999999999999998864
No 18
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.56 E-value=1.4e-14 Score=122.91 Aligned_cols=139 Identities=14% Similarity=0.145 Sum_probs=98.8
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc-CCc-ccEeeHhhhhccC
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPA-ADAIFMKWVLTTW 216 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~~ 216 (301)
.+..+|||||||+| +++|. |.+++.+++ ..+++++.+|+.+. .+. .|+|++..++|++
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 122 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHL 122 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGGS
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCccccC
Confidence 45689999999995 57788 777766543 34899999999875 443 5999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccH--------HHHh---hhhccccccCHHHHHHHH
Q 043063 217 TDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDI--------FVMT---IYRAKGKHMTEQEFKQLG 285 (301)
Q Consensus 217 ~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~--------~m~~---~~~~~g~~rt~~e~~~~l 285 (301)
++.+...+|+++++.|+|||++++.+...+.... ........+... .... -.......+|.++|.++|
T Consensus 123 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 201 (234)
T 3dtn_A 123 EDEDKKELYKRSYSILKESGIFINADLVHGETAF-IENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWL 201 (234)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHH-HHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChh-hhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHHH
Confidence 9988888999999999999999999988765421 000000000000 0000 001123446899999999
Q ss_pred HhCCCCceEEEEc
Q 043063 286 FSAGFPHLRLYRV 298 (301)
Q Consensus 286 ~~aGf~~~~~~~~ 298 (301)
+++||+.+++.-.
T Consensus 202 ~~aGF~~v~~~~~ 214 (234)
T 3dtn_A 202 KEAGFRDVSCIYK 214 (234)
T ss_dssp HHTTCEEEEEEEE
T ss_pred HHcCCCceeeeee
Confidence 9999999988653
No 19
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.53 E-value=1.4e-14 Score=124.96 Aligned_cols=141 Identities=15% Similarity=0.258 Sum_probs=101.9
Q ss_pred hHHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc--c
Q 043063 148 MTSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA--A 204 (301)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~--~ 204 (301)
...+++.++ .....+|||||||+| +++|+ |.+++.+++ .++++++.+|+.+. ++. .
T Consensus 26 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~f 104 (260)
T 1vl5_A 26 LAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF 104 (260)
T ss_dssp HHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred HHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCE
Confidence 445555553 566789999999996 57787 778777654 26799999999764 554 4
Q ss_pred cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHH-HhhhhccccccCHHHHHH
Q 043063 205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFV-MTIYRAKGKHMTEQEFKQ 283 (301)
Q Consensus 205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m-~~~~~~~g~~rt~~e~~~ 283 (301)
|+|++..++|+++|. ..+|++++++|+|||++++.+...+..+ .... .+.... +. .......++.++|.+
T Consensus 105 D~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~---~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~ 175 (260)
T 1vl5_A 105 HIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPEND---AFDV---FYNYVEKER-DYSHHRAWKKSDWLK 175 (260)
T ss_dssp EEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEBCSSH---HHHH---HHHHHHHHH-CTTCCCCCBHHHHHH
T ss_pred EEEEEhhhhHhcCCH--HHHHHHHHHHcCCCCEEEEEEcCCCCCH---HHHH---HHHHHHHhc-CccccCCCCHHHHHH
Confidence 999999999999986 4999999999999999999988765431 1111 111111 11 011234578999999
Q ss_pred HHHhCCCCceEEEEc
Q 043063 284 LGFSAGFPHLRLYRV 298 (301)
Q Consensus 284 ~l~~aGf~~~~~~~~ 298 (301)
+|+++||+.+++...
T Consensus 176 ~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 176 MLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHTCEEEEEEEE
T ss_pred HHHHCCCeEEEEEEe
Confidence 999999998877654
No 20
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.53 E-value=2.7e-14 Score=123.10 Aligned_cols=141 Identities=17% Similarity=0.307 Sum_probs=106.1
Q ss_pred HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCCC----CceeEEeCCCCcc-CCc--ccE
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPA--ADA 206 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~----~ri~~~~gd~~~~-~p~--~D~ 206 (301)
..+++.++ ..+..+|||||||+| +++|+ +.+++.+++. ++++++.+|+.+. ++. .|+
T Consensus 45 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 123 (266)
T 3ujc_A 45 KKILSDIE-LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDL 123 (266)
T ss_dssp HHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEE
T ss_pred HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEE
Confidence 44555664 667789999999995 57787 7777766542 7999999999874 544 499
Q ss_pred eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHH
Q 043063 207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGF 286 (301)
Q Consensus 207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~ 286 (301)
|++..++|++++++...+|+++++.|+|||++++.+...+......+ .+.-... ..+...++.++|.++++
T Consensus 124 v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~------~~~~~~~---~~~~~~~~~~~~~~~l~ 194 (266)
T 3ujc_A 124 IYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDD------EFKEYVK---QRKYTLITVEEYADILT 194 (266)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCH------HHHHHHH---HHTCCCCCHHHHHHHHH
T ss_pred EeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchH------HHHHHHh---cCCCCCCCHHHHHHHHH
Confidence 99999999998888889999999999999999999987664211000 1111111 12334579999999999
Q ss_pred hCCCCceEEEEcc
Q 043063 287 SAGFPHLRLYRVL 299 (301)
Q Consensus 287 ~aGf~~~~~~~~~ 299 (301)
++||+++++.++.
T Consensus 195 ~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 195 ACNFKNVVSKDLS 207 (266)
T ss_dssp HTTCEEEEEEECH
T ss_pred HcCCeEEEEEeCC
Confidence 9999999988753
No 21
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.51 E-value=5.8e-14 Score=119.66 Aligned_cols=128 Identities=16% Similarity=0.320 Sum_probs=96.4
Q ss_pred CCCcceEEeecCCce-------------eeeeh-hHHHhhCCCCCceeEEeCCCCc---cCCc--ccEeeHhhhhccCCh
Q 043063 158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSIPGVTHIGGDMFK---SIPA--ADAIFMKWVLTTWTD 218 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~---~~p~--~D~v~~~~vlh~~~d 218 (301)
+++..+|||||||+| +++|+ +.+++.+++. ++++.+|+.+ +++. .|+|++..++|++++
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~ 116 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDP 116 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCG
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhCCc
Confidence 456689999999996 57787 7777777654 9999999876 3453 499999999999998
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEc
Q 043063 219 DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV 298 (301)
Q Consensus 219 ~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~ 298 (301)
++...+|+++++.|+|||++++....... ... ..+.. .. .......+.++|.++++++||+++++...
T Consensus 117 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-----~~~----~~~~~-~~--~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 184 (240)
T 3dli_A 117 ERLFELLSLCYSKMKYSSYIVIESPNPTS-----LYS----LINFY-ID--PTHKKPVHPETLKFILEYLGFRDVKIEFF 184 (240)
T ss_dssp GGHHHHHHHHHHHBCTTCCEEEEEECTTS-----HHH----HHHHT-TS--TTCCSCCCHHHHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEeCCcch-----hHH----HHHHh-cC--ccccccCCHHHHHHHHHHCCCeEEEEEEe
Confidence 88889999999999999999987664221 111 11111 10 12234568999999999999999888764
Q ss_pred c
Q 043063 299 L 299 (301)
Q Consensus 299 ~ 299 (301)
.
T Consensus 185 ~ 185 (240)
T 3dli_A 185 E 185 (240)
T ss_dssp C
T ss_pred c
Confidence 3
No 22
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.51 E-value=2.4e-14 Score=120.17 Aligned_cols=137 Identities=15% Similarity=0.207 Sum_probs=96.8
Q ss_pred CCCcceEEeecCCce-------------eeeeh-hHHHhhCCCC--CceeEEeCCCCcc-CCc-ccEeeHhhhhccCChH
Q 043063 158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI--PGVTHIGGDMFKS-IPA-ADAIFMKWVLTTWTDD 219 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~--~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~~~d~ 219 (301)
..+..+|||||||+| +++|. +.+++.+++. .+++++.+|+.+. .+. .|+|++..++|++++.
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 122 (220)
T 3hnr_A 43 NKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVSTYAFHHLTDD 122 (220)
T ss_dssp HTCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEEESCGGGSCHH
T ss_pred ccCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEECcchhcCChH
Confidence 345679999999996 57787 7777776542 4899999999875 443 5999999999999998
Q ss_pred HHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhc---cHHHHhhhhccccccCHHHHHHHHHhCCCCceEEE
Q 043063 220 ECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEG---DIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLY 296 (301)
Q Consensus 220 ~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~---d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~ 296 (301)
+...+|+++++.|+|||++++.+...+... ......... ..............++.++|.++|+++||+++.+.
T Consensus 123 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~ 199 (220)
T 3hnr_A 123 EKNVAIAKYSQLLNKGGKIVFADTIFADQD---AYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTR 199 (220)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEEECBSSHH---HHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeccccChH---HHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEee
Confidence 877899999999999999999987654321 111100000 00000000111233489999999999999877765
Q ss_pred E
Q 043063 297 R 297 (301)
Q Consensus 297 ~ 297 (301)
.
T Consensus 200 ~ 200 (220)
T 3hnr_A 200 L 200 (220)
T ss_dssp C
T ss_pred c
Confidence 4
No 23
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.50 E-value=3.8e-14 Score=121.52 Aligned_cols=135 Identities=19% Similarity=0.248 Sum_probs=102.0
Q ss_pred HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc-CCc--ccE
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPA--ADA 206 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~-~p~--~D~ 206 (301)
..+++.++ ..+..+|||||||+| +++|. +.+++.+++ ..+++++.+|+.+. ++. .|+
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 161 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDL 161 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEE
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEE
Confidence 34555554 556789999999995 46787 777776653 26899999998764 443 499
Q ss_pred eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHH
Q 043063 207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGF 286 (301)
Q Consensus 207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~ 286 (301)
|++.+++|++++++..++|+++++.|+|||++++.+........ ..+. ......++.++|.++|+
T Consensus 162 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------~~~~------~~~~~~~~~~~~~~~l~ 226 (254)
T 1xtp_A 162 IVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVDK------EDSSLTRSDIHYKRLFN 226 (254)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEET------TTTEEEBCHHHHHHHHH
T ss_pred EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---------eecc------cCCcccCCHHHHHHHHH
Confidence 99999999999888899999999999999999999975543210 1110 11234579999999999
Q ss_pred hCCCCceEEEEcc
Q 043063 287 SAGFPHLRLYRVL 299 (301)
Q Consensus 287 ~aGf~~~~~~~~~ 299 (301)
++||+++++....
T Consensus 227 ~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 227 ESGVRVVKEAFQE 239 (254)
T ss_dssp HHTCCEEEEEECT
T ss_pred HCCCEEEEeeecC
Confidence 9999999887643
No 24
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.49 E-value=2.4e-13 Score=123.56 Aligned_cols=201 Identities=14% Similarity=0.089 Sum_probs=126.6
Q ss_pred ccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCCCCCChhHHHHh
Q 043063 10 GKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEGQSYAPYVLQ 89 (301)
Q Consensus 10 glf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~ 89 (301)
++|..| .+|.|+.|||+.+|+ +++.+++||+.|.+.|+++.. ++ |++|+.+..+.......+..+.+..
T Consensus 47 ~ll~~L-~~~~t~~eLa~~~g~----~~~~v~~~L~~l~~~gll~~~-----~~-~~lt~~~~~~l~~~~~~~~~~~~~~ 115 (373)
T 2qm3_A 47 NVLSAV-LASDDIWRIVDLSEE----PLPLVVAILESLNELGYVTFE-----DG-VKLTEKGEELVAEYGIGKRYDFTCP 115 (373)
T ss_dssp HHHHHH-HHCSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECS-----SS-SEECHHHHHHHHHHTCCCCCC----
T ss_pred HHHHHh-cCCCCHHHHHHHhCC----ChHHHHHHHHHHhhCCcEEEC-----CC-EEECHHHHHHHHhcCccccccccch
Confidence 889999 689999999999999 899999999999999999886 45 9999987643322111111111100
Q ss_pred h------cchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCCCcce
Q 043063 90 H------HQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKR 163 (301)
Q Consensus 90 ~------~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 163 (301)
. ....+...|..+.+.++... .+. ..+... |. .++. .....+. +.... ..+..+
T Consensus 116 ~~~g~g~~~~~~~~~~~~l~~~~~~~~-~~~-~~~~~~---~~--~~~~--~~~~~l~---------~~~~~--~~~~~~ 175 (373)
T 2qm3_A 116 HCQGKTVDLQAFADLLEQFREIVKDRP-EPL-HEFDQA---YV--TPET--TVARVIL---------MHTRG--DLENKD 175 (373)
T ss_dssp --------CGGGHHHHHHHHHHHTTCC-CCC-GGGTCC---CB--CHHH--HHHHHHH---------HHHTT--CSTTCE
T ss_pred hhcCCCcchhhhHHHHHHHHHHHhcCC-ccc-hhcCCe---ec--CHHH--HHHHHHH---------HhhcC--CCCCCE
Confidence 0 00111234556666666443 211 111110 10 1111 1111110 01111 223579
Q ss_pred EEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC-----cccEeeHhhhhccC
Q 043063 164 LVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP-----AADAIFMKWVLTTW 216 (301)
Q Consensus 164 vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p-----~~D~v~~~~vlh~~ 216 (301)
||||| |+| +++|+ |.+++.+++ .++|+++.+|+.+.+| ..|+|++...+|..
T Consensus 176 VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~ 254 (373)
T 2qm3_A 176 IFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPETLE 254 (373)
T ss_dssp EEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCSSHH
T ss_pred EEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCCchH
Confidence 99999 995 57798 888887764 2389999999987544 25999998766543
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063 217 TDDECKLIMENCYKAIPAGGKLIACEPVL 245 (301)
Q Consensus 217 ~d~~~~~iL~~~~~aL~pgg~lli~e~~~ 245 (301)
. ...+|++++++|+|||++++.+...
T Consensus 255 ~---~~~~l~~~~~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 255 A---IRAFVGRGIATLKGPRCAGYFGITR 280 (373)
T ss_dssp H---HHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred H---HHHHHHHHHHHcccCCeEEEEEEec
Confidence 2 4799999999999999776666543
No 25
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.48 E-value=5.3e-14 Score=117.64 Aligned_cols=134 Identities=16% Similarity=0.142 Sum_probs=94.5
Q ss_pred CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC--CCceeEEeCCCCccCCc--ccEeeHhhhhccCChH
Q 043063 158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS--IPGVTHIGGDMFKSIPA--ADAIFMKWVLTTWTDD 219 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~--~~ri~~~~gd~~~~~p~--~D~v~~~~vlh~~~d~ 219 (301)
.....+|||||||+| +++|. +.+++.+++ ..+++++.+|+.+..+. .|+|++..++|+++++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~ 123 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLAHVPDD 123 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEEESCGGGSCHH
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEEechhhcCCHH
Confidence 445679999999996 57897 778877765 36899999999876443 4999999999999998
Q ss_pred HHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhcc-------ccccCHHHHHHHHHhCCCCc
Q 043063 220 ECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK-------GKHMTEQEFKQLGFSAGFPH 292 (301)
Q Consensus 220 ~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~-------g~~rt~~e~~~~l~~aGf~~ 292 (301)
+...+|+++++.|+|||++++.+...+... ..............-.... ....+.++|.++|+++||++
T Consensus 124 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v 199 (218)
T 3ou2_A 124 RFEAFWESVRSAVAPGGVVEFVDVTDHERR----LEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSC 199 (218)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCCC----------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeCCCCccc----cchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEE
Confidence 888999999999999999999998664321 0000000000000000001 12359999999999999995
Q ss_pred eEE
Q 043063 293 LRL 295 (301)
Q Consensus 293 ~~~ 295 (301)
...
T Consensus 200 ~~~ 202 (218)
T 3ou2_A 200 SVD 202 (218)
T ss_dssp EEE
T ss_pred Eee
Confidence 443
No 26
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.48 E-value=1.5e-13 Score=120.13 Aligned_cols=147 Identities=12% Similarity=0.088 Sum_probs=104.9
Q ss_pred HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc-cc
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA-AD 205 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~-~D 205 (301)
..+++.++ ..+..+|||||||+| +++|+ +..++.+++ .++++++.+|+. ++|. .|
T Consensus 54 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~fD 131 (287)
T 1kpg_A 54 DLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE-QFDEPVD 131 (287)
T ss_dssp HHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG-GCCCCCS
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChh-hCCCCee
Confidence 34555554 667789999999995 56787 777766543 258999999985 4454 59
Q ss_pred EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCC----ChHH-hhhhhhccHHHHhhhhccccccCHHH
Q 043063 206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSN----ESQR-TRALLEGDIFVMTIYRAKGKHMTEQE 280 (301)
Q Consensus 206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~----~~~~-~~~~~~~d~~m~~~~~~~g~~rt~~e 280 (301)
+|++..++|++++++...+|+++++.|+|||++++.+...+.... ..+. .......+..... ...++..++.++
T Consensus 132 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~ 210 (287)
T 1kpg_A 132 RIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTE-IFPGGRLPSIPM 210 (287)
T ss_dssp EEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHH-TSTTCCCCCHHH
T ss_pred EEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHhe-eCCCCCCCCHHH
Confidence 999999999998767789999999999999999999987653210 0000 0000111111111 123566779999
Q ss_pred HHHHHHhCCCCceEEEEc
Q 043063 281 FKQLGFSAGFPHLRLYRV 298 (301)
Q Consensus 281 ~~~~l~~aGf~~~~~~~~ 298 (301)
|.++++++||+++++..+
T Consensus 211 ~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 211 VQECASANGFTVTRVQSL 228 (287)
T ss_dssp HHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHhCCcEEEEEEeC
Confidence 999999999999998875
No 27
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.48 E-value=1.1e-13 Score=119.90 Aligned_cols=142 Identities=16% Similarity=0.134 Sum_probs=104.8
Q ss_pred HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc--
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA-- 203 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~-- 203 (301)
..+++.++ ..+..+|||||||+| +++|+ +.+++.+++ .++++++.+|+.+. ++.
T Consensus 51 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 129 (273)
T 3bus_A 51 DEMIALLD-VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDAS 129 (273)
T ss_dssp HHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTC
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCC
Confidence 44555664 667789999999995 56787 677666543 35899999999764 554
Q ss_pred ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHH
Q 043063 204 ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQ 283 (301)
Q Consensus 204 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~ 283 (301)
.|+|++..++|++++. ..+|+++++.|+|||++++.+........ ... ....+..... ...+..++.++|.+
T Consensus 130 fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~-~~~---~~~~~~~~~~--~~~~~~~~~~~~~~ 201 (273)
T 3bus_A 130 FDAVWALESLHHMPDR--GRALREMARVLRPGGTVAIADFVLLAPVE-GAK---KEAVDAFRAG--GGVLSLGGIDEYES 201 (273)
T ss_dssp EEEEEEESCTTTSSCH--HHHHHHHHTTEEEEEEEEEEEEEESSCCC-HHH---HHHHHHHHHH--HTCCCCCCHHHHHH
T ss_pred ccEEEEechhhhCCCH--HHHHHHHHHHcCCCeEEEEEEeeccCCCC-hhH---HHHHHHHHhh--cCccCCCCHHHHHH
Confidence 4999999999999886 59999999999999999999987654321 111 1111111111 22456789999999
Q ss_pred HHHhCCCCceEEEEcc
Q 043063 284 LGFSAGFPHLRLYRVL 299 (301)
Q Consensus 284 ~l~~aGf~~~~~~~~~ 299 (301)
+++++||+++++..+.
T Consensus 202 ~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 202 DVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHTTCEEEEEEECH
T ss_pred HHHHcCCeEEEEEECc
Confidence 9999999999888764
No 28
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.47 E-value=1.4e-14 Score=121.17 Aligned_cols=144 Identities=15% Similarity=0.207 Sum_probs=98.2
Q ss_pred HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc--
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA-- 203 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~-- 203 (301)
..+++.++ .++. +|||||||+| +++|. +.+++.+++ .++++++.+|+.+. ++.
T Consensus 34 ~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 111 (219)
T 3dlc_A 34 ENIINRFG-ITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNY 111 (219)
T ss_dssp HHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTC
T ss_pred HHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCccc
Confidence 34444443 4444 9999999996 56787 777776654 25899999999874 554
Q ss_pred ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhh-hhhh-ccHHHHhhhhccccccCHHHH
Q 043063 204 ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTR-ALLE-GDIFVMTIYRAKGKHMTEQEF 281 (301)
Q Consensus 204 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~-~~~~-~d~~m~~~~~~~g~~rt~~e~ 281 (301)
.|+|++..++|++++. ..+|+++++.|+|||++++.+...+.... ..... .... ...... .......++.++|
T Consensus 112 ~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 186 (219)
T 3dlc_A 112 ADLIVSRGSVFFWEDV--ATAFREIYRILKSGGKTYIGGGFGNKELR-DSISAEMIRKNPDWKEF--NRKNISQENVERF 186 (219)
T ss_dssp EEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEECCSSHHHH-HHHHHHHHHHCTTHHHH--HHHHSSHHHHHHH
T ss_pred ccEEEECchHhhccCH--HHHHHHHHHhCCCCCEEEEEeccCcHHHH-HHHHHHHHHhHHHHHhh--hhhccccCCHHHH
Confidence 4999999999999775 58999999999999999998765442100 00000 0000 000000 0112334588999
Q ss_pred HHHHHhCCCCceEEEEcc
Q 043063 282 KQLGFSAGFPHLRLYRVL 299 (301)
Q Consensus 282 ~~~l~~aGf~~~~~~~~~ 299 (301)
.++|+++||+.+++....
T Consensus 187 ~~~l~~aGf~~v~~~~~~ 204 (219)
T 3dlc_A 187 QNVLDEIGISSYEIILGD 204 (219)
T ss_dssp HHHHHHHTCSSEEEEEET
T ss_pred HHHHHHcCCCeEEEEecC
Confidence 999999999999988654
No 29
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.46 E-value=9.9e-14 Score=118.21 Aligned_cols=140 Identities=15% Similarity=0.238 Sum_probs=101.2
Q ss_pred HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc--ccE
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA--ADA 206 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~--~D~ 206 (301)
.+++.++ .....+|||||||+| +++|. +.+++.+++ .++++++.+|+.+. ++. .|+
T Consensus 12 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 90 (239)
T 1xxl_A 12 LMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDI 90 (239)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEE
T ss_pred hHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEE
Confidence 3444553 677889999999996 56787 777776653 26899999998764 443 499
Q ss_pred eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHH
Q 043063 207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGF 286 (301)
Q Consensus 207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~ 286 (301)
|++..++|++++. ..+|++++++|+|||++++.+...+... ....+.... ..+. .......++.++|.++|+
T Consensus 91 v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~ll~ 162 (239)
T 1xxl_A 91 ITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPEDP---VLDEFVNHL--NRLR-DPSHVRESSLSEWQAMFS 162 (239)
T ss_dssp EEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSSH---HHHHHHHHH--HHHH-CTTCCCCCBHHHHHHHHH
T ss_pred EEECCchhhccCH--HHHHHHHHHHcCCCcEEEEEEcCCCCCh---hHHHHHHHH--HHhc-cccccCCCCHHHHHHHHH
Confidence 9999999999875 5899999999999999999998766431 111111111 1110 011235579999999999
Q ss_pred hCCCCceEEEEc
Q 043063 287 SAGFPHLRLYRV 298 (301)
Q Consensus 287 ~aGf~~~~~~~~ 298 (301)
++||+.+++...
T Consensus 163 ~aGf~~~~~~~~ 174 (239)
T 1xxl_A 163 ANQLAYQDIQKW 174 (239)
T ss_dssp HTTEEEEEEEEE
T ss_pred HCCCcEEEEEee
Confidence 999998887654
No 30
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.46 E-value=1.2e-13 Score=122.41 Aligned_cols=141 Identities=9% Similarity=0.049 Sum_probs=103.1
Q ss_pred hHHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc-
Q 043063 148 MTSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA- 203 (301)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~- 203 (301)
...+++.++.+.+..+|||||||+| +++|+ +.+++.+++ .++++++.+|+.+. ++.
T Consensus 105 ~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 184 (312)
T 3vc1_A 105 AEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKG 184 (312)
T ss_dssp HHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTT
T ss_pred HHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCC
Confidence 3455565533567789999999995 56787 777776653 25899999999864 553
Q ss_pred -ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHH
Q 043063 204 -ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFK 282 (301)
Q Consensus 204 -~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~ 282 (301)
.|+|++..++|+++ ...+|++++++|+|||++++.+.......... ......++-.. ....++.++|.
T Consensus 185 ~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~~~~~~~------~~~~~s~~~~~ 253 (312)
T 3vc1_A 185 AVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQP--SKWVSQINAHF------ECNIHSRREYL 253 (312)
T ss_dssp CEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSC--CHHHHHHHHHH------TCCCCBHHHHH
T ss_pred CEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccch--hHHHHHHHhhh------cCCCCCHHHHH
Confidence 49999999999994 57999999999999999999998776532110 00111111111 12356899999
Q ss_pred HHHHhCCCCceEEEEcc
Q 043063 283 QLGFSAGFPHLRLYRVL 299 (301)
Q Consensus 283 ~~l~~aGf~~~~~~~~~ 299 (301)
++|+++||+++++..+.
T Consensus 254 ~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 254 RAMADNRLVPHTIVDLT 270 (312)
T ss_dssp HHHHTTTEEEEEEEECH
T ss_pred HHHHHCCCEEEEEEeCC
Confidence 99999999999988753
No 31
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.46 E-value=8e-14 Score=122.52 Aligned_cols=131 Identities=14% Similarity=0.181 Sum_probs=98.7
Q ss_pred CCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc--ccEeeHhhh
Q 043063 158 FKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA--ADAIFMKWV 212 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~--~D~v~~~~v 212 (301)
+.+..+|||||||+| +++|+ +.+++.+++ .++++++.+|+.+. ++. .|+|++..+
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 159 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA 159 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecch
Confidence 566789999999995 56787 777766653 26899999999874 554 499999999
Q ss_pred hccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCc
Q 043063 213 LTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPH 292 (301)
Q Consensus 213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~ 292 (301)
+|++++. ..+|++++++|+|||++++.+...+..... ......+.. .......+.++|.++++++||++
T Consensus 160 l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~---~~~~~~~~~------~~~~~~~~~~~~~~~l~~aGf~~ 228 (297)
T 2o57_A 160 FLHSPDK--LKVFQECARVLKPRGVMAITDPMKEDGIDK---SSIQPILDR------IKLHDMGSLGLYRSLAKECGLVT 228 (297)
T ss_dssp GGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEECTTCCG---GGGHHHHHH------HTCSSCCCHHHHHHHHHHTTEEE
T ss_pred hhhcCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCch---HHHHHHHHH------hcCCCCCCHHHHHHHHHHCCCeE
Confidence 9999984 699999999999999999999876644211 111111111 11123458999999999999999
Q ss_pred eEEEEcc
Q 043063 293 LRLYRVL 299 (301)
Q Consensus 293 ~~~~~~~ 299 (301)
+++.++.
T Consensus 229 ~~~~~~~ 235 (297)
T 2o57_A 229 LRTFSRP 235 (297)
T ss_dssp EEEEECH
T ss_pred EEEEECc
Confidence 9988764
No 32
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.45 E-value=4.6e-13 Score=118.06 Aligned_cols=145 Identities=16% Similarity=0.174 Sum_probs=106.4
Q ss_pred HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc-cc
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA-AD 205 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~-~D 205 (301)
..+++.++ ..+..+|||||||+| +++|+ |.+++.+++ .++++++.+|+.+. +. .|
T Consensus 62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~fD 139 (302)
T 3hem_A 62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEPVD 139 (302)
T ss_dssp HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCCCS
T ss_pred HHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCCcc
Confidence 34555664 677789999999995 57787 777777653 24899999998654 44 59
Q ss_pred EeeHhhhhccCCh-------HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhh--------hccHHHHhhhh
Q 043063 206 AIFMKWVLTTWTD-------DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALL--------EGDIFVMTIYR 270 (301)
Q Consensus 206 ~v~~~~vlh~~~d-------~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~--------~~d~~m~~~~~ 270 (301)
+|++..++|+++| +....+|+++++.|+|||++++.+...+... ....... ..+..... ..
T Consensus 140 ~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~ 215 (302)
T 3hem_A 140 RIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKE---EAQELGLTSPMSLLRFIKFILTE-IF 215 (302)
T ss_dssp EEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHH---HHHHHTCCCCHHHHHHHHHHHHH-TC
T ss_pred EEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCcc---chhhccccccccccchHHHHHHh-cC
Confidence 9999999999955 5667999999999999999999998776431 0110000 01211111 13
Q ss_pred ccccccCHHHHHHHHHhCCCCceEEEEcc
Q 043063 271 AKGKHMTEQEFKQLGFSAGFPHLRLYRVL 299 (301)
Q Consensus 271 ~~g~~rt~~e~~~~l~~aGf~~~~~~~~~ 299 (301)
.++..++.+++.++++++||+++++..+.
T Consensus 216 p~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 244 (302)
T 3hem_A 216 PGGRLPRISQVDYYSSNAGWKVERYHRIG 244 (302)
T ss_dssp TTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred CCCCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence 45678899999999999999999988754
No 33
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.45 E-value=1.7e-13 Score=117.55 Aligned_cols=137 Identities=15% Similarity=0.083 Sum_probs=99.8
Q ss_pred HhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc-cc
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA-AD 205 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~-~D 205 (301)
.+++.++ ..+..+|||||||+| +++|. |.+++.+++ .++++++.+|+.+. .+. .|
T Consensus 27 ~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 105 (256)
T 1nkv_A 27 TLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCD 105 (256)
T ss_dssp HHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEE
T ss_pred HHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCCCC
Confidence 3444453 667789999999995 56787 777776653 25899999999765 323 59
Q ss_pred EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHH
Q 043063 206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLG 285 (301)
Q Consensus 206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l 285 (301)
+|++..++|++++. .++|++++++|+|||++++.+......... ......+.. ......++.++|.++|
T Consensus 106 ~V~~~~~~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~l 174 (256)
T 1nkv_A 106 VAACVGATWIAGGF--AGAEELLAQSLKPGGIMLIGEPYWRQLPAT--EEIAQACGV-------SSTSDFLTLPGLVGAF 174 (256)
T ss_dssp EEEEESCGGGTSSS--HHHHHHHTTSEEEEEEEEEEEEEETTCCSS--HHHHHTTTC-------SCGGGSCCHHHHHHHH
T ss_pred EEEECCChHhcCCH--HHHHHHHHHHcCCCeEEEEecCcccCCCCh--HHHHHHHhc-------ccccccCCHHHHHHHH
Confidence 99999999999874 589999999999999999999876544221 110000110 1112456999999999
Q ss_pred HhCCCCceEEEEc
Q 043063 286 FSAGFPHLRLYRV 298 (301)
Q Consensus 286 ~~aGf~~~~~~~~ 298 (301)
+++||+.+++...
T Consensus 175 ~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 175 DDLGYDVVEMVLA 187 (256)
T ss_dssp HTTTBCCCEEEEC
T ss_pred HHCCCeeEEEEeC
Confidence 9999999887653
No 34
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.44 E-value=4.1e-13 Score=115.93 Aligned_cols=136 Identities=10% Similarity=0.057 Sum_probs=99.4
Q ss_pred hhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCCCCceeEEeCCCCcc-CCc--ccEeeHhhhh
Q 043063 151 ILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA--ADAIFMKWVL 213 (301)
Q Consensus 151 ~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~-~p~--~D~v~~~~vl 213 (301)
+++.++ ..+..+|||||||+| +++|+ |.+++.+++..+++|+.+|+.+. ++. .|+|++.+++
T Consensus 26 l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 104 (261)
T 3ege_A 26 IINLLN-LPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAI 104 (261)
T ss_dssp HHHHHC-CCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESCG
T ss_pred HHHHhC-CCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcchH
Confidence 344443 556789999999996 57898 88899888777999999999764 553 4999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCce
Q 043063 214 TTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHL 293 (301)
Q Consensus 214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~ 293 (301)
|++++. .++|+++++.|+ ||++++.+...+.... .+.. ..+.. +.. ......++.+++. +|+++||+.+
T Consensus 105 ~~~~~~--~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~-~~~~---~~~~~-~~~--~~~~~~~~~~~~~-~l~~aGF~~v 173 (261)
T 3ege_A 105 HHFSHL--EKSFQEMQRIIR-DGTIVLLTFDIRLAQR-IWLY---DYFPF-LWE--DALRFLPLDEQIN-LLQENTKRRV 173 (261)
T ss_dssp GGCSSH--HHHHHHHHHHBC-SSCEEEEEECGGGCCC-CGGG---GTCHH-HHH--HHHTSCCHHHHHH-HHHHHHCSEE
T ss_pred hhccCH--HHHHHHHHHHhC-CcEEEEEEcCCchhHH-HHHH---HHHHH-Hhh--hhhhhCCCHHHHH-HHHHcCCCce
Confidence 999775 599999999999 9999999875432211 1110 11111 111 1223445788899 9999999999
Q ss_pred EEEEc
Q 043063 294 RLYRV 298 (301)
Q Consensus 294 ~~~~~ 298 (301)
++.++
T Consensus 174 ~~~~~ 178 (261)
T 3ege_A 174 EAIPF 178 (261)
T ss_dssp EEEEC
T ss_pred eEEEe
Confidence 88775
No 35
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.44 E-value=5.7e-13 Score=118.29 Aligned_cols=147 Identities=16% Similarity=0.180 Sum_probs=105.2
Q ss_pred HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc-cc
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA-AD 205 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~-~D 205 (301)
..+++.++ ..+..+|||||||+| +++|+ +.+++.+++ .++++++.+|+.+ +|. .|
T Consensus 80 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~fD 157 (318)
T 2fk8_A 80 DLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEPVD 157 (318)
T ss_dssp HHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCCCS
T ss_pred HHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCCCcC
Confidence 44556664 667789999999995 56787 777776653 2579999999854 454 59
Q ss_pred EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCC---h-HHh-hhhhhccHHHHhhhhccccccCHHH
Q 043063 206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNE---S-QRT-RALLEGDIFVMTIYRAKGKHMTEQE 280 (301)
Q Consensus 206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~---~-~~~-~~~~~~d~~m~~~~~~~g~~rt~~e 280 (301)
+|++..++|++++++...+|+++++.|+|||++++.+...+..... . +.. ......+..... ...++..++.++
T Consensus 158 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~ 236 (318)
T 2fk8_A 158 RIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTE-IFPGGRLPSTEM 236 (318)
T ss_dssp EEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHH-TSTTCCCCCHHH
T ss_pred EEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHh-cCCCCcCCCHHH
Confidence 9999999999987778899999999999999999999876542100 0 000 000011111111 123567789999
Q ss_pred HHHHHHhCCCCceEEEEc
Q 043063 281 FKQLGFSAGFPHLRLYRV 298 (301)
Q Consensus 281 ~~~~l~~aGf~~~~~~~~ 298 (301)
|.++++++||+++++..+
T Consensus 237 ~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 237 MVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp HHHHHHHTTCBCCCCEEC
T ss_pred HHHHHHhCCCEEEEEEec
Confidence 999999999999988765
No 36
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.43 E-value=3.5e-13 Score=117.40 Aligned_cols=125 Identities=18% Similarity=0.229 Sum_probs=94.5
Q ss_pred CcceEEeecCCc---e---------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc------------CC--
Q 043063 160 GVKRLVDVGGSA---G---------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS------------IP-- 202 (301)
Q Consensus 160 ~~~~vlDvGgG~---g---------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~------------~p-- 202 (301)
+..+|||||||+ | +.+|+ |.+++.+++ .++++++.+|++++ ++
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 457999999999 6 46798 888887764 37899999999753 22
Q ss_pred cccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHH
Q 043063 203 AADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFK 282 (301)
Q Consensus 203 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~ 282 (301)
..|+|++..+||++++++...+|++++++|+|||+|++.+...+. + ... ....+..... ......||.+||.
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~-~--~~~---~~~~~~~~~~--~~~~~~~s~~ei~ 228 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG-L--PAQ---QKLARITREN--LGEGWARTPEEIE 228 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS-C--HHH---HHHHHHHHHH--HSCCCCBCHHHHH
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc-h--HHH---HHHHHHHHhc--CCCCccCCHHHHH
Confidence 359999999999999988889999999999999999999987642 1 111 1122222221 1235678999999
Q ss_pred HHHHhCCCCceE
Q 043063 283 QLGFSAGFPHLR 294 (301)
Q Consensus 283 ~~l~~aGf~~~~ 294 (301)
++| .||++++
T Consensus 229 ~~l--~G~~l~~ 238 (274)
T 2qe6_A 229 RQF--GDFELVE 238 (274)
T ss_dssp HTT--TTCEECT
T ss_pred HHh--CCCeEcc
Confidence 999 5997665
No 37
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.43 E-value=2.4e-13 Score=115.37 Aligned_cols=119 Identities=17% Similarity=0.235 Sum_probs=95.2
Q ss_pred ceEEeecCCce-------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc--ccEeeHhhhhccCCh
Q 043063 162 KRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA--ADAIFMKWVLTTWTD 218 (301)
Q Consensus 162 ~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~--~D~v~~~~vlh~~~d 218 (301)
.+|||||||+| +++|. |.+++.+++ ..+++++.+|+.+..+. .|+|++..++|++++
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 147 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAIEP 147 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTTSCG
T ss_pred CCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhcCCH
Confidence 59999999996 57787 777776653 25799999999876443 599999999999998
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEc
Q 043063 219 DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV 298 (301)
Q Consensus 219 ~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~ 298 (301)
++...+|++++++|+|||++++.+........ ++ ....+.++|.++|+++||+++++...
T Consensus 148 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-~~-------------------~~~~~~~~~~~~l~~~Gf~~~~~~~~ 207 (235)
T 3lcc_A 148 EMRPAWAKSMYELLKPDGELITLMYPITDHVG-GP-------------------PYKVDVSTFEEVLVPIGFKAVSVEEN 207 (235)
T ss_dssp GGHHHHHHHHHHHEEEEEEEEEEECCCSCCCS-CS-------------------SCCCCHHHHHHHHGGGTEEEEEEEEC
T ss_pred HHHHHHHHHHHHHCCCCcEEEEEEecccccCC-CC-------------------CccCCHHHHHHHHHHcCCeEEEEEec
Confidence 88889999999999999999998875543211 11 11248999999999999999998876
Q ss_pred cC
Q 043063 299 LD 300 (301)
Q Consensus 299 ~~ 300 (301)
+.
T Consensus 208 ~~ 209 (235)
T 3lcc_A 208 PH 209 (235)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 38
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.43 E-value=8.1e-14 Score=115.50 Aligned_cols=124 Identities=19% Similarity=0.078 Sum_probs=97.3
Q ss_pred cceEEeecCCce-------------eeeeh-hHHHhhCCC-CCceeEEeCCCCcc-CCc--ccEeeHhhhhccCChHHHH
Q 043063 161 VKRLVDVGGSAG-------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDECK 222 (301)
Q Consensus 161 ~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~~~ 222 (301)
..+|||||||+| +++|. +.+++.+++ ..+++++.+|+.+. ++. .|+|++..++|++++++..
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~ 121 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELP 121 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHH
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHH
Confidence 578999999996 57787 778877765 47899999999764 443 4999999999999977788
Q ss_pred HHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEcc
Q 043063 223 LIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVL 299 (301)
Q Consensus 223 ~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~ 299 (301)
.+|+++++.|+|||++++.+...+... .++- .......++.++|.++|+++||+++++...+
T Consensus 122 ~~l~~~~~~L~pgG~l~i~~~~~~~~~----------~~~~-----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 122 DALVALRMAVEDGGGLLMSFFSGPSLE----------PMYH-----PVATAYRWPLPELAQALETAGFQVTSSHWDP 183 (203)
T ss_dssp HHHHHHHHTEEEEEEEEEEEECCSSCE----------EECC-----SSSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred HHHHHHHHHcCCCcEEEEEEccCCchh----------hhhc-----hhhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence 999999999999999999886544310 0000 0112345699999999999999999987654
No 39
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.42 E-value=2.7e-13 Score=115.51 Aligned_cols=124 Identities=16% Similarity=0.200 Sum_probs=97.1
Q ss_pred CcceEEeecCCce--------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc--ccEeeHhhhhcc
Q 043063 160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTT 215 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~ 215 (301)
+..+|||||||+| +++|. +.+++.+++ ..+++++.+|+.+. .+. .|+|++..++|+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 158 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH 158 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence 4689999999995 56787 777776653 23689999998654 443 599999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEE
Q 043063 216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRL 295 (301)
Q Consensus 216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~ 295 (301)
+++++...+|+++++.|+|||++++.+...+.. . .++. ......++.++|.++|+++||+++++
T Consensus 159 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~---------~~~~------~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 159 LTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG-V---------ILDD------VDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS-E---------EEET------TTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc-c---------eecc------cCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 999888899999999999999999999876541 0 1110 11234469999999999999999998
Q ss_pred EEcc
Q 043063 296 YRVL 299 (301)
Q Consensus 296 ~~~~ 299 (301)
....
T Consensus 223 ~~~~ 226 (241)
T 2ex4_A 223 ERQE 226 (241)
T ss_dssp EECC
T ss_pred eecC
Confidence 7654
No 40
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.42 E-value=4.9e-13 Score=112.03 Aligned_cols=130 Identities=20% Similarity=0.221 Sum_probs=99.8
Q ss_pred HHhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc-
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA- 203 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~- 203 (301)
..+++.++ .....+|||||||+| +++|. +.+++.+++ .+++++..+|+.+. ++.
T Consensus 27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence 34445553 667789999999995 46787 777776654 25899999999764 444
Q ss_pred -ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHH
Q 043063 204 -ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFK 282 (301)
Q Consensus 204 -~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~ 282 (301)
.|+|++..++|++++. ..+|+++++.|+|||++++.+........ .+ .....++.++|.
T Consensus 106 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~-----------------~~~~~~~~~~~~ 165 (219)
T 3dh0_A 106 TVDFIFMAFTFHELSEP--LKFLEELKRVAKPFAYLAIIDWKKEERDK-GP-----------------PPEEVYSEWEVG 165 (219)
T ss_dssp CEEEEEEESCGGGCSSH--HHHHHHHHHHEEEEEEEEEEEECSSCCSS-SC-----------------CGGGSCCHHHHH
T ss_pred CeeEEEeehhhhhcCCH--HHHHHHHHHHhCCCeEEEEEEeccccccc-CC-----------------chhcccCHHHHH
Confidence 4999999999999875 58999999999999999999876654321 10 011234899999
Q ss_pred HHHHhCCCCceEEEEcc
Q 043063 283 QLGFSAGFPHLRLYRVL 299 (301)
Q Consensus 283 ~~l~~aGf~~~~~~~~~ 299 (301)
++++++||+++++..+.
T Consensus 166 ~~l~~~Gf~~~~~~~~~ 182 (219)
T 3dh0_A 166 LILEDAGIRVGRVVEVG 182 (219)
T ss_dssp HHHHHTTCEEEEEEEET
T ss_pred HHHHHCCCEEEEEEeeC
Confidence 99999999999987754
No 41
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.42 E-value=5.3e-13 Score=113.48 Aligned_cols=130 Identities=17% Similarity=0.143 Sum_probs=96.5
Q ss_pred CCcceEEeecCCce-------------eeeeh-hHHHhhCCC---CCceeEEeCCCCcc-CCc--ccEeeHhhhhccCCh
Q 043063 159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS---IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTD 218 (301)
Q Consensus 159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~---~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d 218 (301)
.+..+|||||||+| +++|. |.+++.+++ ..+++++.+|+.+. ++. .|+|++.+++|++++
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 131 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEE 131 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSSC
T ss_pred CCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhccC
Confidence 35679999999996 57787 777777665 37899999999864 543 499999999999987
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEc
Q 043063 219 DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV 298 (301)
Q Consensus 219 ~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~ 298 (301)
. ..+|+++++.|+|||++++.+........ ......... ........+..+|.++++++||++++...+
T Consensus 132 ~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~---~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 200 (242)
T 3l8d_A 132 P--LRALNEIKRVLKSDGYACIAILGPTAKPR---ENSYPRLYG------KDVVCNTMMPWEFEQLVKEQGFKVVDGIGV 200 (242)
T ss_dssp H--HHHHHHHHHHEEEEEEEEEEEECTTCGGG---GGGGGGGGT------CCCSSCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred H--HHHHHHHHHHhCCCeEEEEEEcCCcchhh---hhhhhhhcc------ccccccCCCHHHHHHHHHHcCCEEEEeecc
Confidence 6 48999999999999999998864432210 011111110 011234468999999999999999998865
Q ss_pred c
Q 043063 299 L 299 (301)
Q Consensus 299 ~ 299 (301)
.
T Consensus 201 ~ 201 (242)
T 3l8d_A 201 Y 201 (242)
T ss_dssp E
T ss_pred c
Confidence 3
No 42
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.40 E-value=2.1e-13 Score=116.09 Aligned_cols=133 Identities=15% Similarity=0.151 Sum_probs=94.2
Q ss_pred CcceEEeecCCce-------------eeeeh-hHHHhhCCCC--CceeEEeCCCCccCCc--ccEeeHhhhhccCChHHH
Q 043063 160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI--PGVTHIGGDMFKSIPA--ADAIFMKWVLTTWTDDEC 221 (301)
Q Consensus 160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~--~ri~~~~gd~~~~~p~--~D~v~~~~vlh~~~d~~~ 221 (301)
+..+|||||||+| +++|. +.+++.+++. .+++++.+|+.+..+. .|+|++.++||+++|.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~-- 119 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDP-- 119 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSSH--
T ss_pred CCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcCH--
Confidence 4568999999996 57787 7777776542 2899999998766443 4999999999999886
Q ss_pred HHHHHHHH-HhCCCCCEEEEeccccCCCCCChHHhhh-hhh------ccHHHHhhhhccccccCHHHHHHHHHhCCCCce
Q 043063 222 KLIMENCY-KAIPAGGKLIACEPVLPDDSNESQRTRA-LLE------GDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHL 293 (301)
Q Consensus 222 ~~iL~~~~-~aL~pgg~lli~e~~~~~~~~~~~~~~~-~~~------~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~ 293 (301)
.++|++++ +.|+|||++++.++..... ...... ... +.-.... ......++.++|.++|+++||+++
T Consensus 120 ~~~l~~~~~~~LkpgG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~Gf~~~ 194 (250)
T 2p7i_A 120 VALLKRINDDWLAEGGRLFLVCPNANAV---SRQIAVKMGIISHNSAVTEAEFA--HGHRCTYALDTLERDASRAGLQVT 194 (250)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEEECTTCH---HHHHHHHTTSSSSTTCCCHHHHH--TTCCCCCCHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCChHHH---HHHHHHHcCccccchhccccccc--ccccccCCHHHHHHHHHHCCCeEE
Confidence 59999999 9999999999987633211 000000 000 0000000 122355799999999999999999
Q ss_pred EEEEcc
Q 043063 294 RLYRVL 299 (301)
Q Consensus 294 ~~~~~~ 299 (301)
++..+.
T Consensus 195 ~~~~~~ 200 (250)
T 2p7i_A 195 YRSGIF 200 (250)
T ss_dssp EEEEEE
T ss_pred EEeeeE
Confidence 987654
No 43
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.40 E-value=8e-13 Score=111.61 Aligned_cols=137 Identities=18% Similarity=0.117 Sum_probs=96.3
Q ss_pred CCcceEEeecCCce-------------eeeeh-hHHHhhCCC-----------CCceeEEeCCCCcc-CCc--ccEeeHh
Q 043063 159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----------IPGVTHIGGDMFKS-IPA--ADAIFMK 210 (301)
Q Consensus 159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----------~~ri~~~~gd~~~~-~p~--~D~v~~~ 210 (301)
+...+|||||||+| +++|. |.+++.+++ ..++++..+|+... ++. .|+|++.
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 108 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ 108 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence 45679999999996 57787 777666543 13689999998764 443 4999999
Q ss_pred hhhccCChH-HHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhh--h-----------hcccccc
Q 043063 211 WVLTTWTDD-ECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI--Y-----------RAKGKHM 276 (301)
Q Consensus 211 ~vlh~~~d~-~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~--~-----------~~~g~~r 276 (301)
.++|++++. ...++|+++++.|+|||++++.+....... +........++..... . ......+
T Consensus 109 ~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (235)
T 3sm3_A 109 AFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHL---KLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHF 185 (235)
T ss_dssp SCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTS---HHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECB
T ss_pred chhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhH---HHHHHHhhhhccchhhhcceEecccccCCcceeeEeC
Confidence 999999864 466899999999999999999987664331 1111111111111100 0 0012357
Q ss_pred CHHHHHHHHHhCCCCceEEEEc
Q 043063 277 TEQEFKQLGFSAGFPHLRLYRV 298 (301)
Q Consensus 277 t~~e~~~~l~~aGf~~~~~~~~ 298 (301)
+.++|.++|+++||+++++...
T Consensus 186 ~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 186 TEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp CHHHHHHHHHTTTEEEEEEEEE
T ss_pred CHHHHHHHHHHcCCEEEEEEec
Confidence 9999999999999999988653
No 44
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.39 E-value=2.3e-13 Score=118.28 Aligned_cols=136 Identities=18% Similarity=0.295 Sum_probs=97.6
Q ss_pred CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc--ccEeeHhhh
Q 043063 158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA--ADAIFMKWV 212 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~--~D~v~~~~v 212 (301)
+.+..+|||||||+| +++|. |.+++.+++ .+++++..+|+.+. ++. .|+|++..+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 567789999999995 56787 777776653 25899999999864 443 499999999
Q ss_pred hccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCC---CCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCC
Q 043063 213 LTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDD---SNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAG 289 (301)
Q Consensus 213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~---~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aG 289 (301)
+|++++.+ .+|+++++.|+|||++++.+...... +...... .............++..++..+|.++|+++|
T Consensus 115 l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 189 (276)
T 3mgg_A 115 LEHLQSPE--EALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAI---EAWNCLIRVQAYMKGNSLVGRQIYPLLQESG 189 (276)
T ss_dssp GGGCSCHH--HHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHH---HHHHHHHHHHHHTTCCTTGGGGHHHHHHHTT
T ss_pred hhhcCCHH--HHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHH---HHHHHHHHHHHhcCCCcchHHHHHHHHHHCC
Confidence 99999864 89999999999999999988543211 1111111 1111111100133456678899999999999
Q ss_pred CCceEEEEc
Q 043063 290 FPHLRLYRV 298 (301)
Q Consensus 290 f~~~~~~~~ 298 (301)
|+++++.+.
T Consensus 190 f~~v~~~~~ 198 (276)
T 3mgg_A 190 FEKIRVEPR 198 (276)
T ss_dssp CEEEEEEEE
T ss_pred CCeEEEeeE
Confidence 999988754
No 45
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.38 E-value=1e-12 Score=119.82 Aligned_cols=129 Identities=19% Similarity=0.297 Sum_probs=96.9
Q ss_pred CCcceEEeecCCce----------------eeeeh-hHHHhhCCCC--------------CceeEEeCCCCc-------c
Q 043063 159 KGVKRLVDVGGSAG----------------INFDL-PEVVAEAPSI--------------PGVTHIGGDMFK-------S 200 (301)
Q Consensus 159 ~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~~--------------~ri~~~~gd~~~-------~ 200 (301)
.+..+|||||||+| +++|+ |.+++.+++. ++++|+.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 35679999999996 46787 7777776542 699999999986 4
Q ss_pred CCc--ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCH
Q 043063 201 IPA--ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTE 278 (301)
Q Consensus 201 ~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~ 278 (301)
++. .|+|++..++|+++|. ..+|++++++|+|||+|++.+...+.... ... ..+..... ...+..++.
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~-----~~~~~~~~--~~~~~~~~~ 231 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLRDGGELYFSDVYADRRLS-EAA-----QQDPILYG--ECLGGALYL 231 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEESSCCC-HHH-----HHCHHHHH--TTCTTCCBH
T ss_pred CCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcCCCCEEEEEEeccccccC-HhH-----hhhHHHhh--cccccCCCH
Confidence 443 4999999999999885 59999999999999999999987664321 111 11111221 223455789
Q ss_pred HHHHHHHHhCCCCceEEEE
Q 043063 279 QEFKQLGFSAGFPHLRLYR 297 (301)
Q Consensus 279 ~e~~~~l~~aGf~~~~~~~ 297 (301)
++|.++|+++||+.+++..
T Consensus 232 ~~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 232 EDFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHCCCceEEEEe
Confidence 9999999999999887754
No 46
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.38 E-value=8.7e-13 Score=113.24 Aligned_cols=129 Identities=16% Similarity=0.158 Sum_probs=95.6
Q ss_pred CCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc--ccEeeHhhh
Q 043063 158 FKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA--ADAIFMKWV 212 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~--~D~v~~~~v 212 (301)
..+..+|||||||+| +++|+ |.+++.+++ .+|++++.+|+.+. ++. .|+|++..+
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 123 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGA 123 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecCh
Confidence 556679999999995 56787 777776543 35799999999653 443 499999999
Q ss_pred hccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCc
Q 043063 213 LTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPH 292 (301)
Q Consensus 213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~ 292 (301)
+|+++ ...+|+++++.|+|||++++.+......... .. ..+..... ....++.++|.++|+++||++
T Consensus 124 l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--~~----~~~~~~~~----~~~~~~~~~~~~~l~~aGf~~ 190 (257)
T 3f4k_A 124 IYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERP--AE----IEDFWMDA----YPEISVIPTCIDKMERAGYTP 190 (257)
T ss_dssp SCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCC--HH----HHHHHHHH----CTTCCBHHHHHHHHHHTTEEE
T ss_pred HhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCCh--HH----HHHHHHHh----CCCCCCHHHHHHHHHHCCCeE
Confidence 99993 3589999999999999999999764433211 11 11111111 123569999999999999999
Q ss_pred eEEEEcc
Q 043063 293 LRLYRVL 299 (301)
Q Consensus 293 ~~~~~~~ 299 (301)
+++..++
T Consensus 191 v~~~~~~ 197 (257)
T 3f4k_A 191 TAHFILP 197 (257)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9988765
No 47
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.38 E-value=6.2e-13 Score=115.07 Aligned_cols=129 Identities=16% Similarity=0.140 Sum_probs=96.8
Q ss_pred CCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc--ccEeeHhhh
Q 043063 158 FKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA--ADAIFMKWV 212 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~--~D~v~~~~v 212 (301)
..+..+|||||||+| +++|+ |.+++.+++ .++++++.+|+.+. ++. .|+|++..+
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~ 123 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGA 123 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCC
Confidence 556789999999995 57788 777776653 26899999999764 443 499999999
Q ss_pred hccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCc
Q 043063 213 LTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPH 292 (301)
Q Consensus 213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~ 292 (301)
+|++ + ...+|+++++.|+|||++++.+........... ..+..... ....++.++|.++++++||++
T Consensus 124 ~~~~-~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~------~~~~~~~~----~~~~~~~~~~~~~l~~aGf~~ 190 (267)
T 3kkz_A 124 IYNI-G--FERGLNEWRKYLKKGGYLAVSECSWFTDERPAE------INDFWMDA----YPEIDTIPNQVAKIHKAGYLP 190 (267)
T ss_dssp GGGT-C--HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHH------HHHHHHHH----CTTCEEHHHHHHHHHHTTEEE
T ss_pred ceec-C--HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHH------HHHHHHHh----CCCCCCHHHHHHHHHHCCCEE
Confidence 9999 3 258999999999999999999987543321111 11111111 124568999999999999999
Q ss_pred eEEEEcc
Q 043063 293 LRLYRVL 299 (301)
Q Consensus 293 ~~~~~~~ 299 (301)
+++..++
T Consensus 191 v~~~~~~ 197 (267)
T 3kkz_A 191 VATFILP 197 (267)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9998875
No 48
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.37 E-value=7.3e-13 Score=116.62 Aligned_cols=150 Identities=11% Similarity=0.166 Sum_probs=98.7
Q ss_pred hHHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCCC---------CceeEEeCCCCcc-CCc
Q 043063 148 MTSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI---------PGVTHIGGDMFKS-IPA 203 (301)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~---------~ri~~~~gd~~~~-~p~ 203 (301)
...+++.++ . ...+|||||||+| +++|+ |.+++.+++. .+|+++.+|+.+. .+.
T Consensus 72 ~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 149 (299)
T 3g2m_A 72 AREFATRTG-P-VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDK 149 (299)
T ss_dssp HHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSC
T ss_pred HHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcCC
Confidence 344445443 3 2349999999995 57898 7888777641 6899999999874 444
Q ss_pred -ccEeeH-hhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCC----CCChHH-----hh-hhhh---------cc
Q 043063 204 -ADAIFM-KWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDD----SNESQR-----TR-ALLE---------GD 262 (301)
Q Consensus 204 -~D~v~~-~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~----~~~~~~-----~~-~~~~---------~d 262 (301)
.|+|++ ..++|++++++..++|++++++|+|||+|++.....+.. ...... .. .... ..
T Consensus 150 ~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 229 (299)
T 3g2m_A 150 RFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQE 229 (299)
T ss_dssp CEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEEEE
T ss_pred CcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccEEE
Confidence 498775 577888888888999999999999999999877644311 000000 00 0000 00
Q ss_pred HHHHh---------hhhccccccCHHHHHHHHHhCCCCceEEEEcc
Q 043063 263 IFVMT---------IYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVL 299 (301)
Q Consensus 263 ~~m~~---------~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~ 299 (301)
+.... .....-+.+|.++|.++|+++||+++++.++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~ 275 (299)
T 3g2m_A 230 ITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFA 275 (299)
T ss_dssp EEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEEC
T ss_pred EEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecC
Confidence 00000 00011224699999999999999999998875
No 49
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.37 E-value=3.1e-13 Score=112.71 Aligned_cols=125 Identities=18% Similarity=0.146 Sum_probs=95.0
Q ss_pred CCCcceEEeecCCce-------------eeeeh-hHHHhhCCCCCceeEEeCCCCccCC-c-ccEeeHhhhhccCChHHH
Q 043063 158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSIPGVTHIGGDMFKSIP-A-ADAIFMKWVLTTWTDDEC 221 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~~p-~-~D~v~~~~vlh~~~d~~~ 221 (301)
+.+..+|||||||+| +++|. +.+++.+++..++++..+|+....+ . .|+|++..++|++++++.
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~~ 120 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRDEL 120 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHHHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHHHH
Confidence 345679999999996 56787 7788777655578888999865422 2 499999999999998888
Q ss_pred HHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCC-CCceEEEEc
Q 043063 222 KLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAG-FPHLRLYRV 298 (301)
Q Consensus 222 ~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aG-f~~~~~~~~ 298 (301)
..+|+++++.|+|||++++.......... . ... ..-..++.++|.++|+++| |+++++...
T Consensus 121 ~~~l~~~~~~LkpgG~l~~~~~~~~~~~~----~----~~~--------~~~~~~~~~~~~~~l~~aG~f~~~~~~~~ 182 (211)
T 3e23_A 121 ADVLKLIWRALKPGGLFYASYKSGEGEGR----D----KLA--------RYYNYPSEEWLRARYAEAGTWASVAVESS 182 (211)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECCSSCEE----C----TTS--------CEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEEEcCCCcccc----c----ccc--------hhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence 99999999999999999988553332100 0 000 0123359999999999999 999998764
No 50
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.37 E-value=3.5e-13 Score=112.09 Aligned_cols=121 Identities=10% Similarity=0.055 Sum_probs=89.9
Q ss_pred CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------------------CCceeEEeCCCCcc-CC--
Q 043063 158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------------------IPGVTHIGGDMFKS-IP-- 202 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------------------~~ri~~~~gd~~~~-~p-- 202 (301)
.....+|||||||+| +++|+ +.+++.|++ ..+|+++.+|+++. .+
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 99 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 99 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence 456689999999995 67898 788877653 25899999999875 33
Q ss_pred c-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHH
Q 043063 203 A-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEF 281 (301)
Q Consensus 203 ~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~ 281 (301)
. .|+|++..++|++++++..+++++++++|+|||+++++....+.....+ .....+.+|+
T Consensus 100 ~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~-------------------~~~~~~~~el 160 (203)
T 1pjz_A 100 GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEG-------------------PPFSVPQTWL 160 (203)
T ss_dssp HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSS-------------------CCCCCCHHHH
T ss_pred CCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCC-------------------CCCCCCHHHH
Confidence 2 4999999999999988778899999999999999554443222110000 0112488999
Q ss_pred HHHHHhCCCCceEEEEc
Q 043063 282 KQLGFSAGFPHLRLYRV 298 (301)
Q Consensus 282 ~~~l~~aGf~~~~~~~~ 298 (301)
.+++++ ||++..+...
T Consensus 161 ~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 161 HRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp HHTSCS-SEEEEEEEES
T ss_pred HHHhcC-CcEEEEeccc
Confidence 999998 9988777654
No 51
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.37 E-value=8.2e-13 Score=116.68 Aligned_cols=140 Identities=16% Similarity=0.128 Sum_probs=96.3
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc-ccEeeHhh
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA-ADAIFMKW 211 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~-~D~v~~~~ 211 (301)
..+..+|||||||+| +++|. |.+++.+++ .+|++++.+|+.+. ++. .|+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 456789999999995 46787 777776653 25699999999875 444 49999999
Q ss_pred hhccCChHH-HHHHHHHHHHhCCCCCEEEEeccccCCCCCChH--Hh-hh----hhhccHHHHhhhhcc--ccccCHHHH
Q 043063 212 VLTTWTDDE-CKLIMENCYKAIPAGGKLIACEPVLPDDSNESQ--RT-RA----LLEGDIFVMTIYRAK--GKHMTEQEF 281 (301)
Q Consensus 212 vlh~~~d~~-~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~--~~-~~----~~~~d~~m~~~~~~~--g~~rt~~e~ 281 (301)
++|++++.+ ...+|+++++.|+|||++++.+...+....... .. .. .......... .... ...++.++|
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 274 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTR-LIQPRWNALRTHAQT 274 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHH-TTCCSCCCCCCHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHH-HHhhhhhccCCHHHH
Confidence 999997654 457999999999999999998876543321000 00 00 0000000100 0011 133699999
Q ss_pred HHHHHhCCCCceEEEEc
Q 043063 282 KQLGFSAGFPHLRLYRV 298 (301)
Q Consensus 282 ~~~l~~aGf~~~~~~~~ 298 (301)
.++|+++||+++++...
T Consensus 275 ~~~l~~aGF~~v~~~~~ 291 (305)
T 3ocj_A 275 RAQLEEAGFTDLRFEDD 291 (305)
T ss_dssp HHHHHHTTCEEEEEECC
T ss_pred HHHHHHCCCEEEEEEcc
Confidence 99999999999998754
No 52
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.35 E-value=4.6e-13 Score=115.55 Aligned_cols=89 Identities=18% Similarity=0.227 Sum_probs=72.7
Q ss_pred CCcceEEeecCCce-------------eeeeh-hHHHhhCCC-CCceeEEeCCCCcc-CCc-ccEeeHhh-hhccCCh-H
Q 043063 159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKS-IPA-ADAIFMKW-VLTTWTD-D 219 (301)
Q Consensus 159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~-~p~-~D~v~~~~-vlh~~~d-~ 219 (301)
.+..+|||||||+| +++|+ |.+++.+++ ..+++++.+|+.+. .+. .|+|++.. ++|++++ +
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~~~ 128 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQA 128 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCHHH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCCHH
Confidence 35689999999996 57898 888887765 46899999999875 444 59999998 9999975 5
Q ss_pred HHHHHHHHHHHhCCCCCEEEEeccccCC
Q 043063 220 ECKLIMENCYKAIPAGGKLIACEPVLPD 247 (301)
Q Consensus 220 ~~~~iL~~~~~aL~pgg~lli~e~~~~~ 247 (301)
+..++|++++++|+|||++++.+...++
T Consensus 129 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 156 (263)
T 3pfg_A 129 ELDAALERFAAHVLPDGVVVVEPWWFPE 156 (263)
T ss_dssp HHHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeccChh
Confidence 6779999999999999999997654443
No 53
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.35 E-value=7.8e-14 Score=117.44 Aligned_cols=85 Identities=16% Similarity=0.253 Sum_probs=71.2
Q ss_pred CcceEEeecCCce-------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc--ccEeeHhhhhccCC
Q 043063 160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWT 217 (301)
Q Consensus 160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~ 217 (301)
...+|||||||+| +++|. |.+++.+++ ..+++++.+|+.+. ++. .|+|++..++|.+.
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~ 117 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE 117 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCC
T ss_pred CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhCC
Confidence 4679999999996 56787 777777654 27899999999874 453 59999999988888
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063 218 DDECKLIMENCYKAIPAGGKLIACEPV 244 (301)
Q Consensus 218 d~~~~~iL~~~~~aL~pgg~lli~e~~ 244 (301)
.++..++|+++++.|+|||++++.++.
T Consensus 118 ~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 118 PLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 777889999999999999999998764
No 54
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.34 E-value=8.4e-13 Score=115.31 Aligned_cols=143 Identities=16% Similarity=0.102 Sum_probs=97.8
Q ss_pred HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCCC-------CceeEEeCCCCcc--CCc--c
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI-------PGVTHIGGDMFKS--IPA--A 204 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~-------~ri~~~~gd~~~~--~p~--~ 204 (301)
.++..++ . +..+|||||||+| +++|. |.+++.+++. ++++++.+|+.+. ++. .
T Consensus 60 ~~l~~~~-~-~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~f 137 (285)
T 4htf_A 60 RVLAEMG-P-QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPV 137 (285)
T ss_dssp HHHHHTC-S-SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCE
T ss_pred HHHHhcC-C-CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCc
Confidence 3444443 3 3579999999996 57898 7777776541 6899999998764 233 4
Q ss_pred cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhh------hhccccccCH
Q 043063 205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI------YRAKGKHMTE 278 (301)
Q Consensus 205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~------~~~~g~~rt~ 278 (301)
|+|++..++|++++. ..+|+++++.|+|||++++.+....... ........+....... .......++.
T Consensus 138 D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (285)
T 4htf_A 138 DLILFHAVLEWVADP--RSVLQTLWSVLRPGGVLSLMFYNAHGLL---MHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDP 212 (285)
T ss_dssp EEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEEBHHHHH---HHHHHTTCHHHHHTTCCCC----CCCSCCBCH
T ss_pred eEEEECchhhcccCH--HHHHHHHHHHcCCCeEEEEEEeCCchHH---HHHHHhcCHHHHhhhccccccccCCCCCCCCH
Confidence 999999999999886 5899999999999999999876432110 0000000001111000 0011245689
Q ss_pred HHHHHHHHhCCCCceEEEEcc
Q 043063 279 QEFKQLGFSAGFPHLRLYRVL 299 (301)
Q Consensus 279 ~e~~~~l~~aGf~~~~~~~~~ 299 (301)
++|.++|+++||+++++..+.
T Consensus 213 ~~l~~~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 213 TQVYLWLEEAGWQIMGKTGVR 233 (285)
T ss_dssp HHHHHHHHHTTCEEEEEEEES
T ss_pred HHHHHHHHHCCCceeeeeeEE
Confidence 999999999999999888753
No 55
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.33 E-value=1.6e-12 Score=111.35 Aligned_cols=144 Identities=15% Similarity=0.105 Sum_probs=95.5
Q ss_pred HhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC---CCceeEEeCCCCcc-CCc--ccEee
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS---IPGVTHIGGDMFKS-IPA--ADAIF 208 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~---~~ri~~~~gd~~~~-~p~--~D~v~ 208 (301)
.+.+.++ .....+|||||||+| +++|. +.+++.+++ ..+++++.+|+.+. ++. .|+|+
T Consensus 35 ~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 113 (253)
T 3g5l_A 35 ELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVL 113 (253)
T ss_dssp HHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEE
T ss_pred HHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEE
Confidence 3444443 445689999999996 56787 777777654 47899999999764 443 49999
Q ss_pred HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC------------CCCCChHHhhhhhhcc-----HHHHhhhhc
Q 043063 209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP------------DDSNESQRTRALLEGD-----IFVMTIYRA 271 (301)
Q Consensus 209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~------------~~~~~~~~~~~~~~~d-----~~m~~~~~~ 271 (301)
+..++|++++. .++|+++++.|+|||++++...... ...... .......++ ..... ...
T Consensus 114 ~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~ 189 (253)
T 3g5l_A 114 SSLALHYIASF--DDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKL-HWPVDRYFNESMRTSHFLG-EDV 189 (253)
T ss_dssp EESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEE-EEEECCTTCCCEEEEEETT-EEE
T ss_pred EchhhhhhhhH--HHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceE-EEEeccccccceEEEeecc-ccC
Confidence 99999999774 5999999999999999998743211 000000 000000000 00000 011
Q ss_pred cccccCHHHHHHHHHhCCCCceEEEEc
Q 043063 272 KGKHMTEQEFKQLGFSAGFPHLRLYRV 298 (301)
Q Consensus 272 ~g~~rt~~e~~~~l~~aGf~~~~~~~~ 298 (301)
....+|.++|.++|+++||+++++...
T Consensus 190 ~~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 190 QKYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp EEECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred ccEecCHHHHHHHHHHcCCeeeeeecC
Confidence 122359999999999999999998743
No 56
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.33 E-value=1.7e-12 Score=113.42 Aligned_cols=136 Identities=17% Similarity=0.188 Sum_probs=93.7
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc-ccEeeHhhhh
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA-ADAIFMKWVL 213 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~-~D~v~~~~vl 213 (301)
..+..+|||||||+| +++|+ |.+++.+++ ..+++++.+|+.+. .+. .|+|++..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l 99 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 99 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence 556789999999995 46787 677765543 23899999999864 444 5999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEeccc-----cC---CCCCChHHh-hhhhhccHHHHhhhhccccccCHHHHHHH
Q 043063 214 TTWTDDECKLIMENCYKAIPAGGKLIACEPV-----LP---DDSNESQRT-RALLEGDIFVMTIYRAKGKHMTEQEFKQL 284 (301)
Q Consensus 214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~~-----~~---~~~~~~~~~-~~~~~~d~~m~~~~~~~g~~rt~~e~~~~ 284 (301)
|+++|. .++|+++++.|+|||++++.++. .. ++.. .+.. ....+..+........+....+..++.++
T Consensus 100 ~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 176 (284)
T 3gu3_A 100 LHMTTP--ETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEK-QSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIY 176 (284)
T ss_dssp GGCSSH--HHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSC-HHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHHHH
T ss_pred hcCCCH--HHHHHHHHHHcCCCCEEEEEecchhcccccceecCcc-hhhccchHHHHHHHHHHhhhhcccccHHHHHHHH
Confidence 999886 49999999999999999999875 11 1111 1110 01111111111101223344567899999
Q ss_pred HHhCCCCceEEE
Q 043063 285 GFSAGFPHLRLY 296 (301)
Q Consensus 285 l~~aGf~~~~~~ 296 (301)
|+++||+.+++.
T Consensus 177 l~~aGF~~v~~~ 188 (284)
T 3gu3_A 177 LSELGVKNIECR 188 (284)
T ss_dssp HHHTTCEEEEEE
T ss_pred HHHcCCCeEEEE
Confidence 999999988774
No 57
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.33 E-value=7.4e-13 Score=106.51 Aligned_cols=124 Identities=15% Similarity=0.179 Sum_probs=95.4
Q ss_pred hhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-CCceeEEeCCCCccCCc--ccEeeHhhhh
Q 043063 151 ILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKSIPA--ADAIFMKWVL 213 (301)
Q Consensus 151 ~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~~p~--~D~v~~~~vl 213 (301)
+++.++ ..+..+|||||||+| +++|. +.+++.+++ .+++++..+| .+++. .|+|++..++
T Consensus 9 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~~l 85 (170)
T 3i9f_A 9 YLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFANSF 85 (170)
T ss_dssp THHHHH-SSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEESCS
T ss_pred HHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEccch
Confidence 344443 567789999999996 56787 777777655 5799999999 34443 5999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCce
Q 043063 214 TTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHL 293 (301)
Q Consensus 214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~ 293 (301)
|++++. ..+|+++++.|+|||++++.+........ .+. ....++.++|.++|+ ||+++
T Consensus 86 ~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-~~~-----------------~~~~~~~~~~~~~l~--Gf~~~ 143 (170)
T 3i9f_A 86 HDMDDK--QHVISEVKRILKDDGRVIIIDWRKENTGI-GPP-----------------LSIRMDEKDYMGWFS--NFVVE 143 (170)
T ss_dssp TTCSCH--HHHHHHHHHHEEEEEEEEEEEECSSCCSS-SSC-----------------GGGCCCHHHHHHHTT--TEEEE
T ss_pred hcccCH--HHHHHHHHHhcCCCCEEEEEEcCcccccc-Cch-----------------HhhhcCHHHHHHHHh--CcEEE
Confidence 999875 59999999999999999999887654321 110 012258999999999 99999
Q ss_pred EEEEcc
Q 043063 294 RLYRVL 299 (301)
Q Consensus 294 ~~~~~~ 299 (301)
++..+.
T Consensus 144 ~~~~~~ 149 (170)
T 3i9f_A 144 KRFNPT 149 (170)
T ss_dssp EEECSS
T ss_pred EccCCC
Confidence 988765
No 58
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.33 E-value=2.4e-12 Score=112.14 Aligned_cols=142 Identities=14% Similarity=0.088 Sum_probs=97.7
Q ss_pred HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-CCceeEEeCCCCcc-CCc-ccEeeHhh
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKS-IPA-ADAIFMKW 211 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~-~p~-~D~v~~~~ 211 (301)
..+++.++ ..+..+|||||||+| +++|+ |.+++.+++ .+++++..+|+... ++. .|+|++..
T Consensus 47 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~ 125 (279)
T 3ccf_A 47 EDLLQLLN-PQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFSNA 125 (279)
T ss_dssp CHHHHHHC-CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEEES
T ss_pred HHHHHHhC-CCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEEcc
Confidence 44555553 556789999999996 56787 777777654 36899999998764 443 59999999
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHH-hh----hhccccccCHHHHHHHHH
Q 043063 212 VLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVM-TI----YRAKGKHMTEQEFKQLGF 286 (301)
Q Consensus 212 vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~-~~----~~~~g~~rt~~e~~~~l~ 286 (301)
++|+++|. ..+|++++++|+|||++++........ ..... ........ .. .......++.++|.++|+
T Consensus 126 ~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (279)
T 3ccf_A 126 MLHWVKEP--EAAIASIHQALKSGGRFVAEFGGKGNI---KYILE--ALYNALETLGIHNPQALNPWYFPSIGEYVNILE 198 (279)
T ss_dssp CGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECTTTT---HHHHH--HHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHH
T ss_pred hhhhCcCH--HHHHHHHHHhcCCCcEEEEEecCCcch---HHHHH--HHHHHHHhcCCccccCcCceeCCCHHHHHHHHH
Confidence 99999875 489999999999999999876543221 11100 01110000 00 000113458999999999
Q ss_pred hCCCCceEEEEc
Q 043063 287 SAGFPHLRLYRV 298 (301)
Q Consensus 287 ~aGf~~~~~~~~ 298 (301)
++||+++++...
T Consensus 199 ~aGf~~~~~~~~ 210 (279)
T 3ccf_A 199 KQGFDVTYAALF 210 (279)
T ss_dssp HHTEEEEEEEEE
T ss_pred HcCCEEEEEEEe
Confidence 999999887643
No 59
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.31 E-value=5.4e-12 Score=107.15 Aligned_cols=145 Identities=19% Similarity=0.193 Sum_probs=95.5
Q ss_pred HhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC---CCceeEEeCCCCcc-CCc--ccEee
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS---IPGVTHIGGDMFKS-IPA--ADAIF 208 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~---~~ri~~~~gd~~~~-~p~--~D~v~ 208 (301)
.+...++ .....+|||||||+| +++|. +.+++.+++ ..+++++.+|+.+. ++. .|+|+
T Consensus 34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 112 (243)
T 3bkw_A 34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAY 112 (243)
T ss_dssp HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEE
T ss_pred HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEE
Confidence 3444443 445689999999995 46787 777776653 25799999998764 443 49999
Q ss_pred HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC--CCCCCh-----------HHhhhhh--hccHHHHhhhhccc
Q 043063 209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP--DDSNES-----------QRTRALL--EGDIFVMTIYRAKG 273 (301)
Q Consensus 209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~--~~~~~~-----------~~~~~~~--~~d~~m~~~~~~~g 273 (301)
+..++|++++. ..+|+++++.|+|||++++...... ...... +...... ......+. .....
T Consensus 113 ~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 189 (243)
T 3bkw_A 113 SSLALHYVEDV--ARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLA-KGVVK 189 (243)
T ss_dssp EESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHH-HSCCE
T ss_pred EeccccccchH--HHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeecc-CceEE
Confidence 99999999864 5999999999999999998764211 000000 0000000 00000010 01122
Q ss_pred cccCHHHHHHHHHhCCCCceEEEEc
Q 043063 274 KHMTEQEFKQLGFSAGFPHLRLYRV 298 (301)
Q Consensus 274 ~~rt~~e~~~~l~~aGf~~~~~~~~ 298 (301)
..+|.++|.++|+++||+++++...
T Consensus 190 ~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 190 HHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp EECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred EeccHHHHHHHHHHcCCEeeeeccC
Confidence 3469999999999999999998764
No 60
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.30 E-value=3.1e-12 Score=107.38 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=93.7
Q ss_pred cceEEeecCCce---------eeeeh-hHHHhhCCCCCceeEEeCCCCcc-CCc--ccEeeHhhhhccCChHHHHHHHHH
Q 043063 161 VKRLVDVGGSAG---------INFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDECKLIMEN 227 (301)
Q Consensus 161 ~~~vlDvGgG~g---------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~~~~iL~~ 227 (301)
..+|||||||+| +++|. +.+++.+++. +++++.+|+.+. ++. .|+|++..++|++++. ..+|++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~ 124 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIKIGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP--ERALKE 124 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCCEEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH--HHHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHHhccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH--HHHHHH
Confidence 679999999997 67887 7777776655 899999998764 443 4999999999999875 589999
Q ss_pred HHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEcc
Q 043063 228 CYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVL 299 (301)
Q Consensus 228 ~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~ 299 (301)
++++|+|||++++.+..... +......... .... .......++.++|.++|+++||+++++....
T Consensus 125 ~~~~L~pgG~l~i~~~~~~~-----~~~~~~~~~~-~~~~-~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~ 189 (219)
T 1vlm_A 125 AYRILKKGGYLIVGIVDRES-----FLGREYEKNK-EKSV-FYKNARFFSTEELMDLMRKAGFEEFKVVQTL 189 (219)
T ss_dssp HHHHEEEEEEEEEEEECSSS-----HHHHHHHHTT-TC-C-CSTTCCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred HHHHcCCCcEEEEEEeCCcc-----HHHHHHHHHh-cCcc-hhcccccCCHHHHHHHHHHCCCeEEEEeccc
Confidence 99999999999998764321 1111111100 0000 0112345699999999999999999887654
No 61
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.28 E-value=4.7e-12 Score=107.98 Aligned_cols=134 Identities=13% Similarity=0.047 Sum_probs=94.8
Q ss_pred CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC---CCceeEEeCCCCcc-CCc-------ccEeeHhhh
Q 043063 158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS---IPGVTHIGGDMFKS-IPA-------ADAIFMKWV 212 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~---~~ri~~~~gd~~~~-~p~-------~D~v~~~~v 212 (301)
.....+|||||||+| +++|. |.+++.+++ ..+++++.+|+.+. .+. .|+|++..+
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~ 133 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTG 133 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESS
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcch
Confidence 345678999999996 57787 777777653 35899999999874 221 489999999
Q ss_pred hccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhh-------ccHHHHhhhhccccccCHHHHHHHH
Q 043063 213 LTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLE-------GDIFVMTIYRAKGKHMTEQEFKQLG 285 (301)
Q Consensus 213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~-------~d~~m~~~~~~~g~~rt~~e~~~~l 285 (301)
+|++++++..++|++++++|+|||+++|.+...++.. ........ ....+-. .......+.+++.++|
T Consensus 134 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 208 (245)
T 3ggd_A 134 FHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCID---FFNSLLEKYGQLPYELLLVMEH--GIRPGIFTAEDIELYF 208 (245)
T ss_dssp STTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHH---HHHHHHHHHSSCCHHHHHHHTT--TCCCCCCCHHHHHHHC
T ss_pred hhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccH---HHHHHHhCCCCCchhhhhcccc--CCCCCccCHHHHHHHh
Confidence 9999988888999999999999999999998654210 00000000 0000000 0111235899999999
Q ss_pred HhCCCCceEEEEc
Q 043063 286 FSAGFPHLRLYRV 298 (301)
Q Consensus 286 ~~aGf~~~~~~~~ 298 (301)
+||++++...+
T Consensus 209 --aGf~~~~~~~~ 219 (245)
T 3ggd_A 209 --PDFEILSQGEG 219 (245)
T ss_dssp --TTEEEEEEECC
T ss_pred --CCCEEEecccc
Confidence 99999887654
No 62
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.28 E-value=9.3e-12 Score=106.97 Aligned_cols=134 Identities=11% Similarity=0.041 Sum_probs=90.5
Q ss_pred CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc--ccEeeHhhhhcc
Q 043063 158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTT 215 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~ 215 (301)
..+..+|||||||+| +++|. +.+++.+++ ..+++++.+|+.+. ++. .|+|++..++|+
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 116 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHL 116 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchhh
Confidence 456789999999996 46787 777766543 36899999999654 444 499999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhc---cccccCHHHHHHHHHhCCCCc
Q 043063 216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRA---KGKHMTEQEFKQLGFSAGFPH 292 (301)
Q Consensus 216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~---~g~~rt~~e~~~~l~~aGf~~ 292 (301)
++|. ..+|+++++.|+|||++++. . ...+ . .+.......+.-.+...... .....+.++|.++|+++||++
T Consensus 117 ~~~~--~~~l~~~~~~L~pgG~l~~~-~-~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 190 (263)
T 2yqz_A 117 VPDW--PKVLAEAIRVLKPGGALLEG-W-DQAE-A-SPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKP 190 (263)
T ss_dssp CTTH--HHHHHHHHHHEEEEEEEEEE-E-EEEC-C-CHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCCC
T ss_pred cCCH--HHHHHHHHHHCCCCcEEEEE-e-cCCC-c-cHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCc
Confidence 9874 58999999999999999988 2 2111 1 11100111111111100000 113458999999999999998
Q ss_pred eEEEE
Q 043063 293 LRLYR 297 (301)
Q Consensus 293 ~~~~~ 297 (301)
+.+..
T Consensus 191 ~~~~~ 195 (263)
T 2yqz_A 191 RTREV 195 (263)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 76543
No 63
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.27 E-value=3.9e-12 Score=107.81 Aligned_cols=89 Identities=18% Similarity=0.259 Sum_probs=71.4
Q ss_pred CCcceEEeecCCce-------------eeeeh-hHHHhhCCC-CCceeEEeCCCCcc-CCc-ccEeeH-hhhhccCCh-H
Q 043063 159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKS-IPA-ADAIFM-KWVLTTWTD-D 219 (301)
Q Consensus 159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~-~p~-~D~v~~-~~vlh~~~d-~ 219 (301)
.+..+|||||||+| +++|. |.+++.+++ .++++++.+|+.+. .+. .|+|++ ..++|++++ +
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~~~ 118 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKTTE 118 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCSHH
T ss_pred CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCCHH
Confidence 35679999999996 56788 788877764 36899999999764 433 599994 559998864 6
Q ss_pred HHHHHHHHHHHhCCCCCEEEEeccccCC
Q 043063 220 ECKLIMENCYKAIPAGGKLIACEPVLPD 247 (301)
Q Consensus 220 ~~~~iL~~~~~aL~pgg~lli~e~~~~~ 247 (301)
+..++|+++++.|+|||++++.+...++
T Consensus 119 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 146 (239)
T 3bxo_A 119 ELGAAVASFAEHLEPGGVVVVEPWWFPE 146 (239)
T ss_dssp HHHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred HHHHHHHHHHHhcCCCeEEEEEeccCcc
Confidence 6789999999999999999998766554
No 64
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.25 E-value=5.6e-12 Score=105.93 Aligned_cols=142 Identities=20% Similarity=0.212 Sum_probs=95.5
Q ss_pred hHHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCCCCceeEEeCCCCcc---CCc--ccEee
Q 043063 148 MTSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSIPGVTHIGGDMFKS---IPA--ADAIF 208 (301)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~---~p~--~D~v~ 208 (301)
...+++.++ .+..+|||||||+| +++|. +.+++.+++.. .++..+|+.+. ++. .|+|+
T Consensus 22 ~~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~v~ 98 (230)
T 3cc8_A 22 NPNLLKHIK--KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFDCVI 98 (230)
T ss_dssp CHHHHTTCC--TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEEEEE
T ss_pred HHHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccCEEE
Confidence 344555552 45689999999996 56787 77777665432 37888998752 443 49999
Q ss_pred HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhh-hhhccH---HHHhhhhccccccCHHHHHHH
Q 043063 209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRA-LLEGDI---FVMTIYRAKGKHMTEQEFKQL 284 (301)
Q Consensus 209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~-~~~~d~---~m~~~~~~~g~~rt~~e~~~~ 284 (301)
+..++|++++. ..+|+++++.|+|||++++..+..... ...... ...+.. .... ......++.++|.++
T Consensus 99 ~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 171 (230)
T 3cc8_A 99 FGDVLEHLFDP--WAVIEKVKPYIKQNGVILASIPNVSHI---SVLAPLLAGNWTYTEYGLLD--KTHIRFFTFNEMLRM 171 (230)
T ss_dssp EESCGGGSSCH--HHHHHHTGGGEEEEEEEEEEEECTTSH---HHHHHHHTTCCCCBSSSTTB--TTCCCCCCHHHHHHH
T ss_pred ECChhhhcCCH--HHHHHHHHHHcCCCCEEEEEeCCcchH---HHHHHHhcCCceeccCCCCC--cceEEEecHHHHHHH
Confidence 99999999886 499999999999999999987543211 000000 000000 0000 011244699999999
Q ss_pred HHhCCCCceEEEEcc
Q 043063 285 GFSAGFPHLRLYRVL 299 (301)
Q Consensus 285 l~~aGf~~~~~~~~~ 299 (301)
|+++||+++++..+.
T Consensus 172 l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 172 FLKAGYSISKVDRVY 186 (230)
T ss_dssp HHHTTEEEEEEEEEE
T ss_pred HHHcCCeEEEEEecc
Confidence 999999999988754
No 65
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.24 E-value=1.5e-12 Score=109.16 Aligned_cols=133 Identities=14% Similarity=0.016 Sum_probs=92.7
Q ss_pred CCcceEEeecCCce-------------eeeeh-hHHHhhCCCCCceeEEeCCCCcc-----CC-c-ccEeeHhhhhccCC
Q 043063 159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSIPGVTHIGGDMFKS-----IP-A-ADAIFMKWVLTTWT 217 (301)
Q Consensus 159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~-----~p-~-~D~v~~~~vlh~~~ 217 (301)
....+|||||||+| +++|. +.+++.+++..++++..+|+... .+ . .|+|++..++| ++
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~ 129 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-HQ 129 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-SS
T ss_pred CCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh-hh
Confidence 34589999999996 57798 78888887778889998887643 22 2 59999999999 66
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhh----hhccccccCHHHHHHHHHhCCCCce
Q 043063 218 DDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI----YRAKGKHMTEQEFKQLGFSAGFPHL 293 (301)
Q Consensus 218 d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~----~~~~g~~rt~~e~~~~l~~aGf~~~ 293 (301)
+. ..+|+++++.|+|||++++.+........ .+. ...+........ .......+|.++|.++|+++||+++
T Consensus 130 ~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 204 (227)
T 3e8s_A 130 DI--IELLSAMRTLLVPGGALVIQTLHPWSVAD-GDY--QDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLV 204 (227)
T ss_dssp CC--HHHHHHHHHTEEEEEEEEEEECCTTTTCT-TCC--SCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEE
T ss_pred hH--HHHHHHHHHHhCCCeEEEEEecCccccCc-ccc--ccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEE
Confidence 54 59999999999999999998875543211 000 000000000000 0011234699999999999999999
Q ss_pred EEEE
Q 043063 294 RLYR 297 (301)
Q Consensus 294 ~~~~ 297 (301)
++..
T Consensus 205 ~~~~ 208 (227)
T 3e8s_A 205 SLQE 208 (227)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8875
No 66
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.24 E-value=3.3e-12 Score=112.20 Aligned_cols=102 Identities=15% Similarity=0.160 Sum_probs=67.6
Q ss_pred CceeEEeCCCCccC------Cc--ccEeeHhhhhccC----ChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHh
Q 043063 188 PGVTHIGGDMFKSI------PA--ADAIFMKWVLTTW----TDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRT 255 (301)
Q Consensus 188 ~ri~~~~gd~~~~~------p~--~D~v~~~~vlh~~----~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~ 255 (301)
.+|+|..+|+..+. +. .|+|++..++|++ +++...++|+++++.|+|||+|++...-.. .+.
T Consensus 154 ~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~~~~~-----~y~- 227 (292)
T 3g07_A 154 NNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWS-----SYG- 227 (292)
T ss_dssp TTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCHH-----HHH-
T ss_pred ccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEecCCch-----hhh-
Confidence 48999999998542 22 4999999999554 777889999999999999999988532111 000
Q ss_pred hhhhhccHHHHhhhhccccccCHHHHHHHHHh--CCCCceEEEEc
Q 043063 256 RALLEGDIFVMTIYRAKGKHMTEQEFKQLGFS--AGFPHLRLYRV 298 (301)
Q Consensus 256 ~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~--aGf~~~~~~~~ 298 (301)
. ...+.-.... .........+++.++|.+ +||+.++++..
T Consensus 228 ~-~~~~~~~~~~--~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 228 K-RKTLTETIYK--NYYRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp T-TTTSCHHHHH--HHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred h-hhcccHHHHh--hhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 0 0000000000 112233457899999999 99998887654
No 67
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.24 E-value=8.2e-12 Score=104.51 Aligned_cols=126 Identities=10% Similarity=0.046 Sum_probs=85.6
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCCCC-----------CceeEEeCCCCcc-CC--cccEee
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPSI-----------PGVTHIGGDMFKS-IP--AADAIF 208 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~~-----------~ri~~~~gd~~~~-~p--~~D~v~ 208 (301)
.+..+|||||||+| +++|. +.+++.+++. .+++++.+|+... .+ ..|+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 107 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT 107 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence 34579999999995 56787 7777766531 2899999998543 33 259999
Q ss_pred HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHH----HH
Q 043063 209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFK----QL 284 (301)
Q Consensus 209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~----~~ 284 (301)
+..++|++++++..++|+++++.|+|||.+++...... ...+......... ........+.+++. ++
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~ 178 (217)
T 3jwh_A 108 VIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEY-------NVKFANLPAGKLR--HKDHRFEWTRSQFQNWANKI 178 (217)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHH-------HHHTC-------------CCSCBCHHHHHHHHHHH
T ss_pred eHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCccc-------chhhccccccccc--ccccccccCHHHHHHHHHHH
Confidence 99999999998888999999999999997766544210 0000000000000 01123346899999 88
Q ss_pred HHhCCCCce
Q 043063 285 GFSAGFPHL 293 (301)
Q Consensus 285 l~~aGf~~~ 293 (301)
++++||++.
T Consensus 179 ~~~~Gf~v~ 187 (217)
T 3jwh_A 179 TERFAYNVQ 187 (217)
T ss_dssp HHHSSEEEE
T ss_pred HHHcCceEE
Confidence 889999764
No 68
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.23 E-value=1e-11 Score=108.89 Aligned_cols=127 Identities=13% Similarity=0.065 Sum_probs=82.8
Q ss_pred CCcceEEeecCCce---------------------eeeeh-hHHHhhCCC-------CCceeE--EeCCCCcc-------
Q 043063 159 KGVKRLVDVGGSAG---------------------INFDL-PEVVAEAPS-------IPGVTH--IGGDMFKS------- 200 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------------~~~Dl-p~v~~~a~~-------~~ri~~--~~gd~~~~------- 200 (301)
.+..+|||||||+| +++|. +.+++.+++ ..++++ ..++..+.
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 34679999999998 45676 667765542 134444 45554321
Q ss_pred CCc--ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhh-ccccccC
Q 043063 201 IPA--ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYR-AKGKHMT 277 (301)
Q Consensus 201 ~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~-~~g~~rt 277 (301)
++. .|+|+++++||+++|. .+.|+++++.|+|||++++.+...+ . . .... +.-....... .....++
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~-~---~-~~~~---~~~~~~~~~~~~~~~~~~ 200 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVVSGS-S---G-WDKL---WKKYGSRFPQDDLCQYIT 200 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEECTT-S---H-HHHH---HHHHGGGSCCCTTCCCCC
T ss_pred cCCCceeEEEEeeeeeecCCH--HHHHHHHHHHcCCCcEEEEEEecCC-c---c-HHHH---HHHHHHhccCCCcccCCC
Confidence 123 4999999999999986 4899999999999999999864321 1 1 1111 1000000000 0123468
Q ss_pred HHHHHHHHHhCCCCceEE
Q 043063 278 EQEFKQLGFSAGFPHLRL 295 (301)
Q Consensus 278 ~~e~~~~l~~aGf~~~~~ 295 (301)
.++|.++|+++||+.+..
T Consensus 201 ~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 201 SDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp HHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHCCCceEEE
Confidence 999999999999998774
No 69
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.22 E-value=3.1e-12 Score=110.59 Aligned_cols=125 Identities=17% Similarity=0.173 Sum_probs=87.4
Q ss_pred CCcceEEeecCCce--------------eeeeh-hHHHhhCCC----C-------------------------------C
Q 043063 159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS----I-------------------------------P 188 (301)
Q Consensus 159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~----~-------------------------------~ 188 (301)
.+..+|||||||+| +++|. |.+++.+++ . .
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 133 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence 35679999999996 35687 666665432 0 1
Q ss_pred cee-EEeCCCCcc--C-----CcccEeeHhhhhccC-Ch-HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhh
Q 043063 189 GVT-HIGGDMFKS--I-----PAADAIFMKWVLTTW-TD-DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRAL 258 (301)
Q Consensus 189 ri~-~~~gd~~~~--~-----p~~D~v~~~~vlh~~-~d-~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~ 258 (301)
+|+ ++.+|+.+. + +..|+|+++.+||+. ++ ++..++|++++++|+|||+|++.+...+.. +
T Consensus 134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~----~----- 204 (263)
T 2a14_A 134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS----Y----- 204 (263)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE----E-----
T ss_pred hhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc----c-----
Confidence 244 889999874 2 235999999999985 32 556789999999999999999987543211 0
Q ss_pred hhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEc
Q 043063 259 LEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV 298 (301)
Q Consensus 259 ~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~ 298 (301)
... - ........+.++|.++|+++||+++++...
T Consensus 205 -~~g---~--~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 205 -MVG---K--REFSCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp -EET---T--EEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred -eeC---C--eEeeccccCHHHHHHHHHHCCCEEEEEeec
Confidence 000 0 011123458999999999999999888653
No 70
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.22 E-value=3.5e-11 Score=103.69 Aligned_cols=126 Identities=15% Similarity=0.204 Sum_probs=90.7
Q ss_pred CcceEEeecCCc------------------eeeeeh-hHHHhhCCC------CCceeEEeCCCCcc---C--C---c-cc
Q 043063 160 GVKRLVDVGGSA------------------GINFDL-PEVVAEAPS------IPGVTHIGGDMFKS---I--P---A-AD 205 (301)
Q Consensus 160 ~~~~vlDvGgG~------------------g~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~--p---~-~D 205 (301)
+..+|||||||. .+.+|. |.|++.+++ ..+++|+.+|+.+. + | . .|
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 568999999996 145787 999998874 24799999999864 1 2 1 14
Q ss_pred -----EeeHhhhhccCChHH-HHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHH
Q 043063 206 -----AIFMKWVLTTWTDDE-CKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQ 279 (301)
Q Consensus 206 -----~v~~~~vlh~~~d~~-~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~ 279 (301)
++++..+||+++|++ ...+|++++++|+|||+|++.+...+..+ . ......+.+... ......||.+
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p----~-~~~~~~~~~~~~--g~p~~~rs~~ 230 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAP----Q-EVGRVAREYAAR--NMPMRLRTHA 230 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSH----H-HHHHHHHHHHHT--TCCCCCCCHH
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCH----H-HHHHHHHHHHhc--CCCCccCCHH
Confidence 688999999999976 57999999999999999999998766331 1 111122222111 1224568999
Q ss_pred HHHHHHHhCCCCceE
Q 043063 280 EFKQLGFSAGFPHLR 294 (301)
Q Consensus 280 e~~~~l~~aGf~~~~ 294 (301)
|+.++|. ||..++
T Consensus 231 ei~~~f~--Glelve 243 (277)
T 3giw_A 231 EAEEFFE--GLELVE 243 (277)
T ss_dssp HHHHTTT--TSEECT
T ss_pred HHHHHhC--CCcccC
Confidence 9999994 998654
No 71
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.22 E-value=1.1e-11 Score=106.36 Aligned_cols=139 Identities=15% Similarity=0.141 Sum_probs=91.9
Q ss_pred HhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC-CCceeEEeCCCCccCCc--ccEeeHh
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKSIPA--ADAIFMK 210 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~~p~--~D~v~~~ 210 (301)
.+++.++ .....+|||||||+| +++|+ |.+++.+++ .++++++.+|+.+..+. .|+|++.
T Consensus 24 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 102 (259)
T 2p35_A 24 DLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYAN 102 (259)
T ss_dssp HHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEEE
T ss_pred HHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEEe
Confidence 3445553 556789999999995 56787 777777654 47899999998764333 4999999
Q ss_pred hhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhh---hccHHHHhhhhccccccCHHHHHHHHHh
Q 043063 211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALL---EGDIFVMTIYRAKGKHMTEQEFKQLGFS 287 (301)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~---~~d~~m~~~~~~~g~~rt~~e~~~~l~~ 287 (301)
.++|++++. ..+|+++++.|+|||++++..+................ +....... .......++.++|.++|++
T Consensus 103 ~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~ 179 (259)
T 2p35_A 103 AVFQWVPDH--LAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGG-GLRRKPLPPPSDYFNALSP 179 (259)
T ss_dssp SCGGGSTTH--HHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC--------CCCCCHHHHHHHHGG
T ss_pred CchhhCCCH--HHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccc-cccccCCCCHHHHHHHHHh
Confidence 999999874 58999999999999999998853321100000000000 00000000 0012345699999999999
Q ss_pred CCCCc
Q 043063 288 AGFPH 292 (301)
Q Consensus 288 aGf~~ 292 (301)
+||++
T Consensus 180 aGf~v 184 (259)
T 2p35_A 180 KSSRV 184 (259)
T ss_dssp GEEEE
T ss_pred cCCce
Confidence 99964
No 72
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.22 E-value=1.7e-11 Score=100.80 Aligned_cols=128 Identities=13% Similarity=0.132 Sum_probs=95.3
Q ss_pred HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc-ccEe
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA-ADAI 207 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~-~D~v 207 (301)
.+++.++ ..+..+|||||||+| +++|. +.+++.+++ .++++++.+|+.+. .+. .|+|
T Consensus 23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v 101 (199)
T 2xvm_A 23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFI 101 (199)
T ss_dssp HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEEEE
T ss_pred HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCceEE
Confidence 3444443 445679999999995 56787 777776653 24799999998764 433 5999
Q ss_pred eHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHh
Q 043063 208 FMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFS 287 (301)
Q Consensus 208 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~ 287 (301)
++..++|++++++..++|+++++.|+|||++++.+........ .+ ......++.+++.++|++
T Consensus 102 ~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~-~~----------------~~~~~~~~~~~l~~~~~~ 164 (199)
T 2xvm_A 102 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP-CT----------------VGFPFAFKEGELRRYYEG 164 (199)
T ss_dssp EEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSC-CC----------------SCCSCCBCTTHHHHHTTT
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcC-CC----------------CCCCCccCHHHHHHHhcC
Confidence 9999999999877889999999999999999998876654311 00 001233588999999986
Q ss_pred CCCCceEEEE
Q 043063 288 AGFPHLRLYR 297 (301)
Q Consensus 288 aGf~~~~~~~ 297 (301)
|++++...
T Consensus 165 --f~~~~~~~ 172 (199)
T 2xvm_A 165 --WERVKYNE 172 (199)
T ss_dssp --SEEEEEEC
T ss_pred --CeEEEecc
Confidence 88887654
No 73
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.21 E-value=1.7e-11 Score=102.67 Aligned_cols=125 Identities=12% Similarity=0.091 Sum_probs=85.1
Q ss_pred CcceEEeecCCce---------------eeeeh-hHHHhhCCCC-----------CceeEEeCCCCcc-CCc--ccEeeH
Q 043063 160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPSI-----------PGVTHIGGDMFKS-IPA--ADAIFM 209 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~~-----------~ri~~~~gd~~~~-~p~--~D~v~~ 209 (301)
+..+|||||||+| +++|. +.+++.+++. .+++++.+|+... .+. .|+|++
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~ 108 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATV 108 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEE
Confidence 4579999999995 56787 7777776541 2899999998543 322 599999
Q ss_pred hhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHH----HHH
Q 043063 210 KWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFK----QLG 285 (301)
Q Consensus 210 ~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~----~~l 285 (301)
..++|++++++..++|+++++.|+|||.+++...... ... +......... ........+.+++. +++
T Consensus 109 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~-~~~------~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~l~ 179 (219)
T 3jwg_A 109 IEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEY-NFH------YGNLFEGNLR--HRDHRFEWTRKEFQTWAVKVA 179 (219)
T ss_dssp ESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGG-GGC------CCCT-----G--GGCCTTSBCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhh-hhh------hcccCccccc--ccCceeeecHHHHHHHHHHHH
Confidence 9999999998888999999999999996655443211 100 0000000000 01123345888998 788
Q ss_pred HhCCCCce
Q 043063 286 FSAGFPHL 293 (301)
Q Consensus 286 ~~aGf~~~ 293 (301)
+++||++.
T Consensus 180 ~~~Gf~v~ 187 (219)
T 3jwg_A 180 EKYGYSVR 187 (219)
T ss_dssp HHHTEEEE
T ss_pred HHCCcEEE
Confidence 89999554
No 74
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.21 E-value=2.2e-11 Score=105.46 Aligned_cols=144 Identities=10% Similarity=0.070 Sum_probs=95.3
Q ss_pred HhhhcCCCCCCcceEEeecCCce----------------eeeeh-hH------HHhhCCC-------CCceeEEeCC-CC
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PE------VVAEAPS-------IPGVTHIGGD-MF 198 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~------v~~~a~~-------~~ri~~~~gd-~~ 198 (301)
.+++.++ ..+..+|||||||+| +++|+ +. +++.+++ .++|+++.+| +.
T Consensus 34 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 112 (275)
T 3bkx_A 34 AIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLS 112 (275)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTT
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 4445554 667789999999995 45676 33 5555543 1689999998 54
Q ss_pred cc---CCc--ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhh-hccHHHHhhhh--
Q 043063 199 KS---IPA--ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALL-EGDIFVMTIYR-- 270 (301)
Q Consensus 199 ~~---~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~-~~d~~m~~~~~-- 270 (301)
.. ++. .|+|++..++|++++.+ .+++.++..++|||++++.+...+.... ........ .....+.. ..
T Consensus 113 ~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~ 188 (275)
T 3bkx_A 113 DDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTAL-DQIGHLQAAMIQGLLYA-IAPS 188 (275)
T ss_dssp TCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSG-GGHHHHHHHHHHHHHHH-HSCC
T ss_pred hccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCch-hhhhHHHHHHHHHHHhh-cccc
Confidence 33 333 49999999999999875 4778788878889999999987765421 11111100 00000000 00
Q ss_pred -cc--ccccCHHHHHHHHHhCCCCceEEEEc
Q 043063 271 -AK--GKHMTEQEFKQLGFSAGFPHLRLYRV 298 (301)
Q Consensus 271 -~~--g~~rt~~e~~~~l~~aGf~~~~~~~~ 298 (301)
.. ...++.++|.++++++||+++++.++
T Consensus 189 ~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 189 DVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp TTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred ccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 01 13579999999999999999987765
No 75
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.21 E-value=1.7e-11 Score=105.63 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=71.4
Q ss_pred CcceEEeecCCce-------------eeeeh-hHHHhhCCCCCceeEEeCCCCcc-CCc--ccEeeHhhhhccCChHHHH
Q 043063 160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDECK 222 (301)
Q Consensus 160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~~~ 222 (301)
...+|||||||+| +++|. +.+++.+++.++|+++.+|+.+. +|. .|+|++..++|.++.+
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~--- 115 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD--- 115 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH---
T ss_pred CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH---
Confidence 4568999999996 57898 88999999999999999998764 665 4999999999887643
Q ss_pred HHHHHHHHhCCCCCEEEEeccccC
Q 043063 223 LIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 223 ~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
+++++++++|+|||+|+++....+
T Consensus 116 ~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 116 RFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp HHHHHHHHHEEEEEEEEEEEECCC
T ss_pred HHHHHHHHHcCCCCEEEEEECCCC
Confidence 789999999999999998876443
No 76
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.20 E-value=2.4e-11 Score=103.12 Aligned_cols=81 Identities=28% Similarity=0.390 Sum_probs=65.9
Q ss_pred CcceEEeecCCce------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc-ccEeeHhh-hhccC-C
Q 043063 160 GVKRLVDVGGSAG------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA-ADAIFMKW-VLTTW-T 217 (301)
Q Consensus 160 ~~~~vlDvGgG~g------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~-~D~v~~~~-vlh~~-~ 217 (301)
...+|||||||+| +++|. |.+++.+++ ..+++++.+|+.+. .+. .|+|++.. ++|++ +
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~ 112 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNYLQT 112 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchhhcCC
Confidence 4579999999996 46787 777777654 25799999998764 444 59999986 99988 5
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEE
Q 043063 218 DDECKLIMENCYKAIPAGGKLIA 240 (301)
Q Consensus 218 d~~~~~iL~~~~~aL~pgg~lli 240 (301)
.++...+|+++++.|+|||++++
T Consensus 113 ~~~~~~~l~~~~~~L~pgG~l~~ 135 (243)
T 3d2l_A 113 EADVKQTFDSAARLLTDGGKLLF 135 (243)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEE
Confidence 56778999999999999999887
No 77
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.19 E-value=2e-11 Score=104.85 Aligned_cols=118 Identities=8% Similarity=-0.028 Sum_probs=88.5
Q ss_pred CcceEEeecCCce-------------eeeeh-hHHHhhCCC-----------------------CCceeEEeCCCCcc-C
Q 043063 160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----------------------IPGVTHIGGDMFKS-I 201 (301)
Q Consensus 160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----------------------~~ri~~~~gd~~~~-~ 201 (301)
...+|||||||+| +++|+ |.+++.|++ ..+|+|+.+|+++. .
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~ 147 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPR 147 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGG
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCc
Confidence 5679999999995 67898 777776532 25899999999875 3
Q ss_pred C--c-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCH
Q 043063 202 P--A-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTE 278 (301)
Q Consensus 202 p--~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~ 278 (301)
+ . .|+|+...+||++++++..++++++++.|+|||+++++....+.....+| ....+.
T Consensus 148 ~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~-------------------~~~~~~ 208 (252)
T 2gb4_A 148 ANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGP-------------------PFYVPS 208 (252)
T ss_dssp GCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCS-------------------SCCCCH
T ss_pred ccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCC-------------------CCCCCH
Confidence 2 2 49999999999999888889999999999999999766544332100000 112489
Q ss_pred HHHHHHHHhCCCCceEEEE
Q 043063 279 QEFKQLGFSAGFPHLRLYR 297 (301)
Q Consensus 279 ~e~~~~l~~aGf~~~~~~~ 297 (301)
+|+.++|+. +|+++.+..
T Consensus 209 ~el~~~l~~-~f~v~~~~~ 226 (252)
T 2gb4_A 209 AELKRLFGT-KCSMQCLEE 226 (252)
T ss_dssp HHHHHHHTT-TEEEEEEEE
T ss_pred HHHHHHhhC-CeEEEEEec
Confidence 999999987 588877654
No 78
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=99.17 E-value=2.5e-11 Score=98.15 Aligned_cols=109 Identities=15% Similarity=0.053 Sum_probs=85.2
Q ss_pred CCCcceEEeecCCceeeeeh-hHHHhhCCC--CCceeEEeCCCCcc-C---Cc--ccEeeHhhhhccC-ChHHHHHHHHH
Q 043063 158 FKGVKRLVDVGGSAGINFDL-PEVVAEAPS--IPGVTHIGGDMFKS-I---PA--ADAIFMKWVLTTW-TDDECKLIMEN 227 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g~~~Dl-p~v~~~a~~--~~ri~~~~gd~~~~-~---p~--~D~v~~~~vlh~~-~d~~~~~iL~~ 227 (301)
.....+|||||||... +|. +.+++.+++ ..+++++.+|+.+. . +. .|+|++..++|++ ++. .++|++
T Consensus 10 ~~~g~~vL~~~~g~v~-vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~--~~~l~~ 86 (176)
T 2ld4_A 10 ISAGQFVAVVWDKSSP-VEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHS--AEILAE 86 (176)
T ss_dssp CCTTSEEEEEECTTSC-HHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCC--HHHHHH
T ss_pred CCCCCEEEEecCCcee-eeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhhhcccCH--HHHHHH
Confidence 5677899999999855 897 788887764 24699999998764 4 43 4999999999998 664 589999
Q ss_pred HHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCC
Q 043063 228 CYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF 290 (301)
Q Consensus 228 ~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf 290 (301)
+++.|+|||++++.++....... ....++.++|.++|+++||
T Consensus 87 ~~r~LkpgG~l~~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 87 IARILRPGGCLFLKEPVETAVDN---------------------NSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp HHHHEEEEEEEEEEEEEESSSCS---------------------SSSSCCHHHHHHHHHHTTC
T ss_pred HHHHCCCCEEEEEEccccccccc---------------------ccccCCHHHHHHHHHHCCC
Confidence 99999999999997664432100 1123588999999999999
No 79
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.15 E-value=4.9e-11 Score=99.52 Aligned_cols=101 Identities=18% Similarity=0.143 Sum_probs=77.2
Q ss_pred CCCcceEEeecCCcee----------eeehhHHHhhCCCCCceeEEeCCCCcc-CCc--ccEeeHhhhhccCChHHHHHH
Q 043063 158 FKGVKRLVDVGGSAGI----------NFDLPEVVAEAPSIPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDECKLI 224 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g~----------~~Dlp~v~~~a~~~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~~~~i 224 (301)
..+..+|||||||+|. ++|..+. ++++..+|+.+. ++. .|+|++..++| +++ ...+
T Consensus 65 ~~~~~~vLDiG~G~G~~~~~l~~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~-~~~--~~~~ 133 (215)
T 2zfu_A 65 RPASLVVADFGCGDCRLASSIRNPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFCLSLM-GTN--IRDF 133 (215)
T ss_dssp SCTTSCEEEETCTTCHHHHHCCSCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEESCCC-SSC--HHHH
T ss_pred cCCCCeEEEECCcCCHHHHHhhccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEehhcc-ccC--HHHH
Confidence 3456799999999973 3444221 688899998764 443 49999999998 444 4699
Q ss_pred HHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEE
Q 043063 225 MENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR 297 (301)
Q Consensus 225 L~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~ 297 (301)
|+++++.|+|||++++.+.... ..+.++|.++++++||++++...
T Consensus 134 l~~~~~~L~~gG~l~i~~~~~~----------------------------~~~~~~~~~~l~~~Gf~~~~~~~ 178 (215)
T 2zfu_A 134 LEEANRVLKPGGLLKVAEVSSR----------------------------FEDVRTFLRAVTKLGFKIVSKDL 178 (215)
T ss_dssp HHHHHHHEEEEEEEEEEECGGG----------------------------CSCHHHHHHHHHHTTEEEEEEEC
T ss_pred HHHHHHhCCCCeEEEEEEcCCC----------------------------CCCHHHHHHHHHHCCCEEEEEec
Confidence 9999999999999999875211 01789999999999999887543
No 80
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.15 E-value=5.7e-11 Score=97.01 Aligned_cols=119 Identities=18% Similarity=0.259 Sum_probs=92.6
Q ss_pred HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-CCceeEEeCCCCcc-CCc--ccEeeHh-
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKS-IPA--ADAIFMK- 210 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~-~p~--~D~v~~~- 210 (301)
.++..+ ..+..+|||||||+| +++|. |.+++.+++ ..+++++.+|+.+. ++. .|+|++.
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~ 115 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAG 115 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECC
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECC
Confidence 344444 346679999999995 56787 777776654 36799999999874 543 5999998
Q ss_pred hhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCC
Q 043063 211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF 290 (301)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf 290 (301)
.++|++++++...+|+++++.|+|||++++..... ..++.++|.++++++||
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~----------------------------~~~~~~~~~~~l~~~Gf 167 (195)
T 3cgg_A 116 NVMGFLAEDGREPALANIHRALGADGRAVIGFGAG----------------------------RGWVFGDFLEVAERVGL 167 (195)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT----------------------------SSCCHHHHHHHHHHHTE
T ss_pred cHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC----------------------------CCcCHHHHHHHHHHcCC
Confidence 89999988888899999999999999998864311 11378899999999999
Q ss_pred CceEEEEc
Q 043063 291 PHLRLYRV 298 (301)
Q Consensus 291 ~~~~~~~~ 298 (301)
++.++...
T Consensus 168 ~~~~~~~~ 175 (195)
T 3cgg_A 168 ELENAFES 175 (195)
T ss_dssp EEEEEESS
T ss_pred EEeeeecc
Confidence 98887543
No 81
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.15 E-value=9.1e-12 Score=103.35 Aligned_cols=134 Identities=10% Similarity=0.014 Sum_probs=93.4
Q ss_pred CcceEEeecCCce--------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc--ccEeeHhhhhccC
Q 043063 160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTW 216 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~ 216 (301)
+..+|||||||+| +++|. +.+++.+++ ..+++++.+|+.+. ++. .|+|++..++|++
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 102 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHM 102 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGGS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHHhC
Confidence 4579999999996 45687 777776653 26799999999764 543 4999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCC-C-hHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceE
Q 043063 217 TDDECKLIMENCYKAIPAGGKLIACEPVLPDDSN-E-SQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLR 294 (301)
Q Consensus 217 ~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~-~-~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~ 294 (301)
+.++..++|+++++.|+|||++++.+...++..- . .+.... .+...... ........+.+++.++|+++||...+
T Consensus 103 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~e~~~~~~~~g~~~~~ 179 (209)
T 2p8j_A 103 RKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEG--EFLQLERG-EKVIHSYVSLEEADKYFKDMKVLFKE 179 (209)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETT--EEEECC-C-CCEEEEEECHHHHHHTTTTSEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccc--cceeccCC-CceeEEecCHHHHHHHHhhcCceeee
Confidence 8778889999999999999999999886654321 0 000000 00000000 00113456999999999999987665
Q ss_pred EE
Q 043063 295 LY 296 (301)
Q Consensus 295 ~~ 296 (301)
..
T Consensus 180 ~~ 181 (209)
T 2p8j_A 180 DR 181 (209)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 82
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.14 E-value=3.5e-11 Score=105.25 Aligned_cols=140 Identities=14% Similarity=0.115 Sum_probs=94.1
Q ss_pred CCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-C-Cc--ccEeeHhh
Q 043063 158 FKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-I-PA--ADAIFMKW 211 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~-p~--~D~v~~~~ 211 (301)
..+..+|||||||+| +++|. +.+++.+++ ..+++++.+|+.+. + +. .|+|++..
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 345679999999995 46787 777776653 15799999999874 4 33 49999999
Q ss_pred hhcc--CChHHHHHHHHHHHHhCCCCCEEEEeccccCCC---------CC-----------ChHHhhhhhhccHHHHh-h
Q 043063 212 VLTT--WTDDECKLIMENCYKAIPAGGKLIACEPVLPDD---------SN-----------ESQRTRALLEGDIFVMT-I 268 (301)
Q Consensus 212 vlh~--~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~---------~~-----------~~~~~~~~~~~d~~m~~-~ 268 (301)
++|+ .+.++...+|+++++.|+|||++++..+..+.- .+ .-|. .....+.+.... +
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~l~~~~ 220 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPM-ESVREYRFTLLDSV 220 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCT-TTCCEEEEEETTSC
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccc-cccceEEEEEchhh
Confidence 9998 566778899999999999999999887532100 00 0000 000000000000 0
Q ss_pred hhccccccCHHHHHHHHHhCCCCceEEEEc
Q 043063 269 YRAKGKHMTEQEFKQLGFSAGFPHLRLYRV 298 (301)
Q Consensus 269 ~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~ 298 (301)
.......++.++|.++++++||+++++.++
T Consensus 221 ~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 221 NNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp SSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred cCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 001124568999999999999999998765
No 83
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.13 E-value=4.2e-11 Score=101.66 Aligned_cols=82 Identities=21% Similarity=0.177 Sum_probs=66.9
Q ss_pred CcceEEeecCCce-------------eeeeh-hHHHhhCCCC-----CceeEEeCCCCcc-CCc-ccEeeHhh-hhccCC
Q 043063 160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPA-ADAIFMKW-VLTTWT 217 (301)
Q Consensus 160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~-----~ri~~~~gd~~~~-~p~-~D~v~~~~-vlh~~~ 217 (301)
+..+|||||||+| +++|. +.+++.+++. .+++++.+|+.+. .+. .|+|++.. ++|+++
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~ 116 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYII 116 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGGCC
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccccC
Confidence 4579999999996 56787 7777776542 2899999998764 444 59999998 999995
Q ss_pred h-HHHHHHHHHHHHhCCCCCEEEEe
Q 043063 218 D-DECKLIMENCYKAIPAGGKLIAC 241 (301)
Q Consensus 218 d-~~~~~iL~~~~~aL~pgg~lli~ 241 (301)
+ ++..++|+++++.|+|||++++.
T Consensus 117 ~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 117 DSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp SHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 4 66789999999999999999873
No 84
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.12 E-value=1.8e-11 Score=107.08 Aligned_cols=125 Identities=16% Similarity=0.186 Sum_probs=86.4
Q ss_pred CcceEEeecCCce--------------eeeeh-hHHHhhCCCC--------------C----------------------
Q 043063 160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPSI--------------P---------------------- 188 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~--------------~---------------------- 188 (301)
...+|||||||+| +++|+ +.+++.+++. .
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 4579999999996 46687 6777654320 0
Q ss_pred ceeEEeCCCCcc-------CCc--ccEeeHhhhhccCChH--HHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhh
Q 043063 189 GVTHIGGDMFKS-------IPA--ADAIFMKWVLTTWTDD--ECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRA 257 (301)
Q Consensus 189 ri~~~~gd~~~~-------~p~--~D~v~~~~vlh~~~d~--~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~ 257 (301)
.++++.+|+.+. ++. .|+|++..+||+++++ +..++|++++++|+|||+|++.+.....- . .
T Consensus 151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~-----~-~- 223 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESW-----Y-L- 223 (289)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCE-----E-E-
T ss_pred hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcce-----E-E-
Confidence 145666788762 222 5999999999985543 56799999999999999999986432110 0 0
Q ss_pred hhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEcc
Q 043063 258 LLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVL 299 (301)
Q Consensus 258 ~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~ 299 (301)
..+ .......++.++|.++|+++||+++++....
T Consensus 224 --~~~------~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 224 --AGE------ARLTVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp --ETT------EEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred --cCC------eeeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 000 0111234589999999999999999887654
No 85
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.11 E-value=2e-10 Score=105.73 Aligned_cols=137 Identities=16% Similarity=0.163 Sum_probs=93.2
Q ss_pred hHHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCCCCceeEEeCCCCc----cCC---c-cc
Q 043063 148 MTSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSIPGVTHIGGDMFK----SIP---A-AD 205 (301)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~----~~p---~-~D 205 (301)
...+++.+. .....+|||||||+| +++|. +.+++.+++. .+......+.. .+| . .|
T Consensus 96 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~~fD 173 (416)
T 4e2x_A 96 ARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEGPAN 173 (416)
T ss_dssp HHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHCCEE
T ss_pred HHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCCCEE
Confidence 345666664 667789999999996 57787 7778777654 33333322211 122 2 59
Q ss_pred EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHH
Q 043063 206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLG 285 (301)
Q Consensus 206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l 285 (301)
+|++.++||+++|. ..+|+++++.|+|||++++..+....- . .. ..++... ......++.++|.+++
T Consensus 174 ~I~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~-----~-~~-~~~~~~~----~~~~~~~s~~~l~~ll 240 (416)
T 4e2x_A 174 VIYAANTLCHIPYV--QSVLEGVDALLAPDGVFVFEDPYLGDI-----V-AK-TSFDQIF----DEHFFLFSATSVQGMA 240 (416)
T ss_dssp EEEEESCGGGCTTH--HHHHHHHHHHEEEEEEEEEEEECHHHH-----H-HH-TCGGGCS----TTCCEECCHHHHHHHH
T ss_pred EEEECChHHhcCCH--HHHHHHHHHHcCCCeEEEEEeCChHHh-----h-hh-cchhhhh----hhhhhcCCHHHHHHHH
Confidence 99999999999875 599999999999999999875532210 0 00 0111100 1123456999999999
Q ss_pred HhCCCCceEEEEcc
Q 043063 286 FSAGFPHLRLYRVL 299 (301)
Q Consensus 286 ~~aGf~~~~~~~~~ 299 (301)
+++||+++++..++
T Consensus 241 ~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 241 QRCGFELVDVQRLP 254 (416)
T ss_dssp HHTTEEEEEEEEEC
T ss_pred HHcCCEEEEEEEcc
Confidence 99999999988754
No 86
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.10 E-value=5.6e-11 Score=102.16 Aligned_cols=126 Identities=16% Similarity=0.200 Sum_probs=89.3
Q ss_pred CCcceEEeecCCce--------------eeeeh-hHHHhhCCC----CC-------------------------------
Q 043063 159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS----IP------------------------------- 188 (301)
Q Consensus 159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~----~~------------------------------- 188 (301)
....+|||||||+| +++|. +.+++.+++ ..
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 35679999999995 45687 667766542 11
Q ss_pred ce-eEEeCCCCcc--CC----c-ccEeeHhhhhccCChH--HHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhh
Q 043063 189 GV-THIGGDMFKS--IP----A-ADAIFMKWVLTTWTDD--ECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRAL 258 (301)
Q Consensus 189 ri-~~~~gd~~~~--~p----~-~D~v~~~~vlh~~~d~--~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~ 258 (301)
++ +++.+|+.+. .+ . .|+|++..+||++++. +...+|+++++.|+|||+|++.+...... .
T Consensus 135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~-----~---- 205 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSY-----Y---- 205 (265)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-----E----
T ss_pred hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCce-----E----
Confidence 28 9999999864 22 2 4999999999955432 56799999999999999999988533210 0
Q ss_pred hhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEcc
Q 043063 259 LEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVL 299 (301)
Q Consensus 259 ~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~ 299 (301)
...+ ........+.++|.++|+++||+++++....
T Consensus 206 ~~~~------~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 206 MIGE------QKFSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp EETT------EEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred EcCC------ccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 0000 0111234589999999999999999887643
No 87
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.07 E-value=1.6e-10 Score=95.41 Aligned_cols=118 Identities=12% Similarity=0.094 Sum_probs=86.3
Q ss_pred eEEeecCCce-------------eeeeh-hHHHhhCCCC-----CceeEEeCCCCcc-CCc--ccEeeHhhhhccCChHH
Q 043063 163 RLVDVGGSAG-------------INFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDE 220 (301)
Q Consensus 163 ~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~-----~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~ 220 (301)
+|||||||+| +++|. +.+++.+++. .+++++.+|+.+. ++. .|+|++. +++++.++
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~~~~~ 109 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCHLPSSL 109 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCCCCHHH
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhcCCHHH
Confidence 9999999995 56787 7777776542 3899999999765 443 4999984 34567777
Q ss_pred HHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEc
Q 043063 221 CKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV 298 (301)
Q Consensus 221 ~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~ 298 (301)
...+|+++++.|+|||++++.+...... . ...... ......++.+++.++|+ ||+++++...
T Consensus 110 ~~~~l~~~~~~L~pgG~l~~~~~~~~~~-----~--~~~~~~-------~~~~~~~~~~~l~~~l~--Gf~v~~~~~~ 171 (202)
T 2kw5_A 110 RQQLYPKVYQGLKPGGVFILEGFAPEQL-----Q--YNTGGP-------KDLDLLPKLETLQSELP--SLNWLIANNL 171 (202)
T ss_dssp HHHHHHHHHTTCCSSEEEEEEEECTTTG-----G--GTSCCS-------SSGGGCCCHHHHHHHCS--SSCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEEEeccccc-----c--CCCCCC-------CcceeecCHHHHHHHhc--CceEEEEEEE
Confidence 8899999999999999999988754321 0 000000 01123569999999999 9999987764
No 88
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.04 E-value=1.9e-10 Score=95.94 Aligned_cols=86 Identities=22% Similarity=0.327 Sum_probs=70.6
Q ss_pred CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC----CCceeEEeCCCCccCCc--ccEeeHhhhhccCC
Q 043063 158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKSIPA--ADAIFMKWVLTTWT 217 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~~p~--~D~v~~~~vlh~~~ 217 (301)
..+..+|||||||+| +++|. +.+++.+++ .++++++.+|+.+..+. .|+|++..++|+++
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~ 128 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYYLE 128 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGGSS
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHhCC
Confidence 445789999999996 56787 777766543 46899999999875433 59999999999999
Q ss_pred h-HHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 218 D-DECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 218 d-~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
+ +...++|+++++.|+|||++++...
T Consensus 129 ~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 129 DMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 7 5566899999999999999998765
No 89
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.04 E-value=4.7e-11 Score=104.44 Aligned_cols=85 Identities=19% Similarity=0.247 Sum_probs=69.0
Q ss_pred CCcceEEeecCCce-------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCcc----CCc--ccEee
Q 043063 159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKS----IPA--ADAIF 208 (301)
Q Consensus 159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~----~p~--~D~v~ 208 (301)
.+..+|||||||+| +++|+ |.+++.+++ ..++.+..+|+... ++. .|+|+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~ 135 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI 135 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEE
Confidence 35679999999996 57898 777777642 25788999998752 233 49999
Q ss_pred Hh-hhhccCCh-----HHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 209 MK-WVLTTWTD-----DECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 209 ~~-~vlh~~~d-----~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
+. +++|++++ ++..++|+++++.|+|||++++..+
T Consensus 136 ~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 136 CLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp ECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 98 89999998 7778999999999999999998764
No 90
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.02 E-value=3.8e-10 Score=93.72 Aligned_cols=120 Identities=14% Similarity=0.120 Sum_probs=83.6
Q ss_pred CcceEEeecCCce-----------eeeeh-hHHHhhCCCC-CceeEEeCCCCcc-CCc--ccEeeHhhhhccCChHHHHH
Q 043063 160 GVKRLVDVGGSAG-----------INFDL-PEVVAEAPSI-PGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDECKL 223 (301)
Q Consensus 160 ~~~~vlDvGgG~g-----------~~~Dl-p~v~~~a~~~-~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~~~~ 223 (301)
+..+|||||||+| +++|. +.+++.+++. .+++++.+|+.+. ++. .|+|++..++|++++. .+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~ 113 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRLPYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDV--ER 113 (211)
T ss_dssp CCSEEEEETCTTCHHHHHCCCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSCH--HH
T ss_pred CCCeEEEECCCCCHhHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCCH--HH
Confidence 5679999999996 45677 7777766543 6899999998764 444 4999999999999875 58
Q ss_pred HHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCC
Q 043063 224 IMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAG 289 (301)
Q Consensus 224 iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aG 289 (301)
+|+++++.|+|||++++.+..... +.............. .......+|.+++.++|+ |
T Consensus 114 ~l~~~~~~L~pgG~l~i~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 114 VLLEARRVLRPGGALVVGVLEALS-----PWAALYRRLGEKGVL-PWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp HHHHHHHHEEEEEEEEEEEECTTS-----HHHHHHHHHHHTTCT-TGGGCCCCCHHHHHHHHC--S
T ss_pred HHHHHHHHcCCCCEEEEEecCCcC-----cHHHHHHHHhhccCc-cccccccCCHHHHHHHhc--C
Confidence 999999999999999998864321 111110000000000 011244579999999998 7
No 91
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.01 E-value=2.7e-10 Score=103.11 Aligned_cols=97 Identities=16% Similarity=0.279 Sum_probs=73.3
Q ss_pred HHhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC---------------CCceeEEeCCC
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS---------------IPGVTHIGGDM 197 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~---------------~~ri~~~~gd~ 197 (301)
..+++.+. .....+|||||||+| +++|+ |.+++.|++ .++|+|+.||+
T Consensus 163 ~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~ 241 (438)
T 3uwp_A 163 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 241 (438)
T ss_dssp HHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc
Confidence 44555554 677889999999995 56787 555544432 37899999999
Q ss_pred Ccc-CC----cccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCC
Q 043063 198 FKS-IP----AADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDS 249 (301)
Q Consensus 198 ~~~-~p----~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~ 249 (301)
++. ++ .+|+|++..+++ ++ +....|+++++.|+|||+|++.|.+.+++.
T Consensus 242 ~~lp~~d~~~~aDVVf~Nn~~F-~p--dl~~aL~Ei~RvLKPGGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 242 LSEEWRERIANTSVIFVNNFAF-GP--EVDHQLKERFANMKEGGRIVSSKPFAPLNF 295 (438)
T ss_dssp TSHHHHHHHHTCSEEEECCTTC-CH--HHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred cCCccccccCCccEEEEccccc-Cc--hHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence 875 42 469999877763 33 346778999999999999999999888653
No 92
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.01 E-value=2.4e-10 Score=100.40 Aligned_cols=83 Identities=20% Similarity=0.174 Sum_probs=67.7
Q ss_pred CCcceEEeecCCce----------------eeeeh-hHHHhhCCC--------CCceeEEeCCCCcc-CCc--------c
Q 043063 159 KGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS--------IPGVTHIGGDMFKS-IPA--------A 204 (301)
Q Consensus 159 ~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~--------~~ri~~~~gd~~~~-~p~--------~ 204 (301)
.+..+|||||||+| +++|+ |.+++.+++ ..+++|+.+|+.+. ++. .
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 46789999999995 46787 777777653 46999999999863 332 4
Q ss_pred cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063 205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV 244 (301)
Q Consensus 205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~ 244 (301)
|+|++..++|++ + ..++|+++++.|+|||+|++.+..
T Consensus 115 D~V~~~~~l~~~-~--~~~~l~~~~~~LkpgG~l~i~~~~ 151 (299)
T 3g5t_A 115 DMITAVECAHWF-D--FEKFQRSAYANLRKDGTIAIWGYA 151 (299)
T ss_dssp EEEEEESCGGGS-C--HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEeHhhHHHHh-C--HHHHHHHHHHhcCCCcEEEEEecC
Confidence 999999999999 4 469999999999999999995543
No 93
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=98.99 E-value=7.3e-11 Score=100.35 Aligned_cols=118 Identities=17% Similarity=0.160 Sum_probs=79.0
Q ss_pred CCcceEEeecCCce--------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCc---cCCc--ccEee-----
Q 043063 159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFK---SIPA--ADAIF----- 208 (301)
Q Consensus 159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~---~~p~--~D~v~----- 208 (301)
....+|||||||+| +++|+ |.+++.|++ ..+++++.+|... +++. .|.|+
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~ 138 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 138 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeee
Confidence 35689999999996 57787 888888764 3578888888643 2443 25554
Q ss_pred HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhcc-HHHHhhhhccccccCHHHHHHHHHh
Q 043063 209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGD-IFVMTIYRAKGKHMTEQEFKQLGFS 287 (301)
Q Consensus 209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d-~~m~~~~~~~g~~rt~~e~~~~l~~ 287 (301)
....++++++. ..+++++++.|||||+|++++..... ......++ ... ...+.+...|.+
T Consensus 139 ~~~~~~~~~~~--~~~~~e~~rvLkPGG~l~f~~~~~~~-------~~~~~~~~~~~~----------~~~~~~~~~L~e 199 (236)
T 3orh_A 139 LSEETWHTHQF--NFIKNHAFRLLKPGGVLTYCNLTSWG-------ELMKSKYSDITI----------MFEETQVPALLE 199 (236)
T ss_dssp CBGGGTTTHHH--HHHHHTHHHHEEEEEEEEECCHHHHH-------HHTTTTCSCHHH----------HHHHHTHHHHHH
T ss_pred cccchhhhcch--hhhhhhhhheeCCCCEEEEEecCCch-------hhhhhhhhhhhh----------hhHHHHHHHHHH
Confidence 56667667664 58999999999999999887643210 00011111 111 134567778889
Q ss_pred CCCCceEE
Q 043063 288 AGFPHLRL 295 (301)
Q Consensus 288 aGf~~~~~ 295 (301)
+||++..+
T Consensus 200 aGF~~~~i 207 (236)
T 3orh_A 200 AGFRRENI 207 (236)
T ss_dssp HTCCGGGE
T ss_pred cCCeEEEE
Confidence 99997654
No 94
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=98.96 E-value=3.1e-09 Score=85.51 Aligned_cols=106 Identities=20% Similarity=0.172 Sum_probs=82.9
Q ss_pred CcceEEeecCCce------------eeeeh-hHHHhhCCCCCceeEEeCCCCccCCc--ccEeeHhhhhccCChH-----
Q 043063 160 GVKRLVDVGGSAG------------INFDL-PEVVAEAPSIPGVTHIGGDMFKSIPA--ADAIFMKWVLTTWTDD----- 219 (301)
Q Consensus 160 ~~~~vlDvGgG~g------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~~p~--~D~v~~~~vlh~~~d~----- 219 (301)
...+|||||||+| +++|. |.+++. .++++++.+|+.++++. .|+|+++..+|..++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~~~~~ 99 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRNTVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDPIIGG 99 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTSEEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCTTTBC
T ss_pred CCCeEEEeccCccHHHHHHHhcCcEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCccccccC
Confidence 3469999999996 46787 777776 57899999999887553 4999999888865554
Q ss_pred --HHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEE
Q 043063 220 --ECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR 297 (301)
Q Consensus 220 --~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~ 297 (301)
+...+++++.+.+ |||++++.+... .+.+++.++++++||+...+..
T Consensus 100 ~~~~~~~~~~~~~~l-pgG~l~~~~~~~------------------------------~~~~~l~~~l~~~gf~~~~~~~ 148 (170)
T 3q87_B 100 GYLGREVIDRFVDAV-TVGMLYLLVIEA------------------------------NRPKEVLARLEERGYGTRILKV 148 (170)
T ss_dssp CGGGCHHHHHHHHHC-CSSEEEEEEEGG------------------------------GCHHHHHHHHHHTTCEEEEEEE
T ss_pred CcchHHHHHHHHhhC-CCCEEEEEEecC------------------------------CCHHHHHHHHHHCCCcEEEEEe
Confidence 4467899999999 999999877411 0467788899999999888765
Q ss_pred cc
Q 043063 298 VL 299 (301)
Q Consensus 298 ~~ 299 (301)
..
T Consensus 149 ~~ 150 (170)
T 3q87_B 149 RK 150 (170)
T ss_dssp EE
T ss_pred ec
Confidence 43
No 95
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=98.94 E-value=4.7e-10 Score=97.79 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=91.7
Q ss_pred HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc-ccEee
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA-ADAIF 208 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~-~D~v~ 208 (301)
.+++.++ .....+|||||||+| +++|. +.+++.+++ ..+++++.+|+.+. .+. .|+|+
T Consensus 111 ~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~i~ 189 (286)
T 3m70_A 111 DVVDAAK-IISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDFIV 189 (286)
T ss_dssp HHHHHHH-HSCSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEEEE
T ss_pred HHHHHhh-ccCCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccEEE
Confidence 3444443 335789999999996 57787 777776653 12899999999875 333 59999
Q ss_pred HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhC
Q 043063 209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSA 288 (301)
Q Consensus 209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~a 288 (301)
+..++|+++++....+|+++++.|+|||++++......++.. .+ .......+.+++.++++.
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~----------------~~~~~~~~~~~l~~~~~~- 251 (286)
T 3m70_A 190 STVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVP-CP----------------LPFSFTFAENELKEYYKD- 251 (286)
T ss_dssp ECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSC-CS----------------SCCSCCBCTTHHHHHTTT-
T ss_pred EccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCC-CC----------------CCccccCCHHHHHHHhcC-
Confidence 999999999988899999999999999998887765544311 10 001223477888888854
Q ss_pred CCCceEEE
Q 043063 289 GFPHLRLY 296 (301)
Q Consensus 289 Gf~~~~~~ 296 (301)
|.++...
T Consensus 252 -~~~~~~~ 258 (286)
T 3m70_A 252 -WEFLEYN 258 (286)
T ss_dssp -SEEEEEE
T ss_pred -CEEEEEE
Confidence 7776653
No 96
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=98.94 E-value=2.9e-09 Score=87.99 Aligned_cols=110 Identities=12% Similarity=0.144 Sum_probs=81.2
Q ss_pred hhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC---ccc
Q 043063 151 ILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP---AAD 205 (301)
Q Consensus 151 ~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p---~~D 205 (301)
++..++ ..+..+|||||||+| +++|. |.+++.+++ .++++++.+|+.+..+ ..|
T Consensus 32 ~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 110 (204)
T 3e05_A 32 TLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPD 110 (204)
T ss_dssp HHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCS
T ss_pred HHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCC
Confidence 344453 667789999999996 56787 777777654 2789999999976533 369
Q ss_pred EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHH
Q 043063 206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLG 285 (301)
Q Consensus 206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l 285 (301)
+|++...++ ...++|+++.+.|+|||++++...... +.+++.+++
T Consensus 111 ~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~------------------------------~~~~~~~~l 155 (204)
T 3e05_A 111 RVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTLD------------------------------TLTKAVEFL 155 (204)
T ss_dssp EEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBHH------------------------------HHHHHHHHH
T ss_pred EEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEecccc------------------------------cHHHHHHHH
Confidence 999888775 345899999999999999998654211 355677788
Q ss_pred HhCCCCceEEEE
Q 043063 286 FSAGFPHLRLYR 297 (301)
Q Consensus 286 ~~aGf~~~~~~~ 297 (301)
+++|| .+++..
T Consensus 156 ~~~g~-~~~~~~ 166 (204)
T 3e05_A 156 EDHGY-MVEVAC 166 (204)
T ss_dssp HHTTC-EEEEEE
T ss_pred HHCCC-ceeEEE
Confidence 88888 544443
No 97
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=98.88 E-value=2e-09 Score=89.86 Aligned_cols=127 Identities=9% Similarity=0.032 Sum_probs=78.2
Q ss_pred CCCcceEEeecCCce---------------eeeeh-hHHHhh----CCC------CCceeEEeCCCCcc-CCc-ccEee-
Q 043063 158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAE----APS------IPGVTHIGGDMFKS-IPA-ADAIF- 208 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~----a~~------~~ri~~~~gd~~~~-~p~-~D~v~- 208 (301)
..+..+|||||||+| +++|. +.+++. +++ .++++++.+|+.+. ++. .|.|+
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~ 104 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV 104 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence 446689999999996 56788 664543 222 35899999999764 432 14444
Q ss_pred --Hhhhhc--cCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHH
Q 043063 209 --MKWVLT--TWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQL 284 (301)
Q Consensus 209 --~~~vlh--~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~ 284 (301)
....+| +++|. ..+|++++++|+|||++++.-........ .+ ... +.. .-......+++..+
T Consensus 105 ~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-~~--~~~---~~~------~~~~~~~~~~l~~~ 170 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSS--PEMLRGMAAVCRPGASFLVALNLHAWRPS-VP--EVG---EHP------EPTPDSADEWLAPR 170 (218)
T ss_dssp ESCCHHHHHHHHTSS--SHHHHHHHHTEEEEEEEEEEEEGGGBTTB-CG--GGT---TCC------CCCHHHHHHHHHHH
T ss_pred EccchhhhhhhhccH--HHHHHHHHHHcCCCcEEEEEecccccccc-cc--ccc---cCC------ccchHHHHHHHHHH
Confidence 333332 44544 48999999999999999984332211100 00 000 000 00111235568889
Q ss_pred HHhCCCCceEEEEc
Q 043063 285 GFSAGFPHLRLYRV 298 (301)
Q Consensus 285 l~~aGf~~~~~~~~ 298 (301)
++++||++.++..+
T Consensus 171 l~~aGf~i~~~~~~ 184 (218)
T 3mq2_A 171 YAEAGWKLADCRYL 184 (218)
T ss_dssp HHHTTEEEEEEEEE
T ss_pred HHHcCCCceeeecc
Confidence 99999999887754
No 98
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=98.87 E-value=8.8e-09 Score=86.90 Aligned_cols=116 Identities=16% Similarity=0.230 Sum_probs=78.7
Q ss_pred CCCcceEEeecCCce---------------eeeeh-hHHHhh----CCCCCceeEEeCCCCc----c-CCc-ccEeeHhh
Q 043063 158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAE----APSIPGVTHIGGDMFK----S-IPA-ADAIFMKW 211 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~----a~~~~ri~~~~gd~~~----~-~p~-~D~v~~~~ 211 (301)
+.+..+|||||||+| +++|. |.+++. ++..+++.++.+|+.. . ++. .|+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 566789999999996 35676 666644 3345789999999986 2 333 49988
Q ss_pred hhccCChH-HHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCC
Q 043063 212 VLTTWTDD-ECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF 290 (301)
Q Consensus 212 vlh~~~d~-~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf 290 (301)
|++++. ....+|+++++.|+|||++++. ..........+. ... ..+++. +|+++||
T Consensus 149 --~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~~---------~~~----------~~~~l~-~l~~~Gf 205 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKDP---------KEI----------FKEQKE-ILEAGGF 205 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSCH---------HHH----------HHHHHH-HHHHHTE
T ss_pred --EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCCH---------HHh----------hHHHHH-HHHHCCC
Confidence 666554 3457799999999999999986 211111000000 011 246777 8999999
Q ss_pred CceEEEEcc
Q 043063 291 PHLRLYRVL 299 (301)
Q Consensus 291 ~~~~~~~~~ 299 (301)
+.+++.++.
T Consensus 206 ~~~~~~~~~ 214 (230)
T 1fbn_A 206 KIVDEVDIE 214 (230)
T ss_dssp EEEEEEECT
T ss_pred EEEEEEccC
Confidence 999888753
No 99
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=98.86 E-value=9.5e-10 Score=93.19 Aligned_cols=86 Identities=19% Similarity=0.321 Sum_probs=65.2
Q ss_pred CCcceEEeecCCce--------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc---CCc--ccEeeH-hhh
Q 043063 159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS---IPA--ADAIFM-KWV 212 (301)
Q Consensus 159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~---~p~--~D~v~~-~~v 212 (301)
....+|||||||+| +++|. +.+++.+++ ..+++++.+|+.+. ++. .|+|++ .+.
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~ 138 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 138 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCcc
Confidence 35679999999996 56787 778777654 26899999998653 443 499988 444
Q ss_pred --hccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063 213 --LTTWTDDECKLIMENCYKAIPAGGKLIACEPV 244 (301)
Q Consensus 213 --lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~ 244 (301)
.+++.......+|+++++.|+|||++++++..
T Consensus 139 ~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 139 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred cchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 44455555568899999999999999988764
No 100
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=98.84 E-value=1.6e-09 Score=93.21 Aligned_cols=93 Identities=13% Similarity=0.105 Sum_probs=67.3
Q ss_pred HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCCC---CceeEEeCCCCc----cCC-cccE
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI---PGVTHIGGDMFK----SIP-AADA 206 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~---~ri~~~~gd~~~----~~p-~~D~ 206 (301)
..++..++ ..+..+|||||||+| +++|. +.+++.+++. ..+.....++.. ..+ ..|+
T Consensus 35 ~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~ 113 (261)
T 3iv6_A 35 ENDIFLEN-IVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDF 113 (261)
T ss_dssp HHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSE
T ss_pred HHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccE
Confidence 44555554 667789999999996 57897 7788776542 122222222221 122 2599
Q ss_pred eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
|++..++|++++++...+|++++++| |||++++.-.
T Consensus 114 Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 114 VLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred EEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 99999999999988899999999999 9999988744
No 101
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=98.83 E-value=3.4e-09 Score=89.45 Aligned_cols=120 Identities=13% Similarity=0.188 Sum_probs=78.6
Q ss_pred cCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhC----CCCCceeEEeCCCCcc--CC---c-ccE
Q 043063 154 GYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEA----PSIPGVTHIGGDMFKS--IP---A-ADA 206 (301)
Q Consensus 154 ~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a----~~~~ri~~~~gd~~~~--~p---~-~D~ 206 (301)
.++ +++..+|||+|||+| +.+|. |.+++.+ ++..++..+.+|...+ .+ . .|+
T Consensus 72 ~l~-ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDv 150 (233)
T 4df3_A 72 ELP-VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDG 150 (233)
T ss_dssp CCC-CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEE
T ss_pred hcC-CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEE
Confidence 343 788899999999995 35687 6666553 4467899999988764 22 1 488
Q ss_pred eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHH
Q 043063 207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGF 286 (301)
Q Consensus 207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~ 286 (301)
|++. +++ ++ +...+++++++.|||||+++|.......+.. .+ .. ...++-.+.|+
T Consensus 151 Vf~d--~~~-~~-~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~-~p-------------------~~-~~~~~ev~~L~ 205 (233)
T 4df3_A 151 LYAD--VAQ-PE-QAAIVVRNARFFLRDGGYMLMAIKARSIDVT-TE-------------------PS-EVYKREIKTLM 205 (233)
T ss_dssp EEEC--CCC-TT-HHHHHHHHHHHHEEEEEEEEEEEECCHHHHH-TC-------------------CC-HHHHHHHHHHH
T ss_pred EEEe--ccC-Ch-hHHHHHHHHHHhccCCCEEEEEEecccCCCC-CC-------------------hH-HHHHHHHHHHH
Confidence 7643 322 22 3458899999999999999987542221100 00 00 01223345678
Q ss_pred hCCCCceEEEEcc
Q 043063 287 SAGFPHLRLYRVL 299 (301)
Q Consensus 287 ~aGf~~~~~~~~~ 299 (301)
++||+..+...+.
T Consensus 206 ~~GF~l~e~i~L~ 218 (233)
T 4df3_A 206 DGGLEIKDVVHLD 218 (233)
T ss_dssp HTTCCEEEEEECT
T ss_pred HCCCEEEEEEccC
Confidence 9999999988763
No 102
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.82 E-value=4e-09 Score=89.92 Aligned_cols=92 Identities=20% Similarity=0.348 Sum_probs=70.0
Q ss_pred HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc-ccEee
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA-ADAIF 208 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~-~D~v~ 208 (301)
.+++... ..+..+|||||||+| +++|. |.+++.+++ ..+++++.+|+.+. .+. .|+|+
T Consensus 32 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~ 110 (252)
T 1wzn_A 32 EIFKEDA-KREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVT 110 (252)
T ss_dssp HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEE
T ss_pred HHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEE
Confidence 3444442 345679999999996 57788 777777653 24799999999864 444 59998
Q ss_pred Hh-hhhccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063 209 MK-WVLTTWTDDECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 209 ~~-~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
+. ..+|++++++..++|+++++.|+|||++++.-
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 111 MFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp ECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 76 45677787788999999999999999988643
No 103
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=98.82 E-value=2.1e-09 Score=93.17 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=48.6
Q ss_pred ceeEEeCCCCcc-CC--c-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 189 GVTHIGGDMFKS-IP--A-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 189 ri~~~~gd~~~~-~p--~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
+|+|..+|+.++ +| . .|+|+|.++|++++++...+++++++++|+|||.|++-..
T Consensus 195 ~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~s 253 (274)
T 1af7_A 195 YVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHS 253 (274)
T ss_dssp TEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred cCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 699999999985 55 2 4999999999999998889999999999999999988543
No 104
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=98.82 E-value=1.8e-09 Score=95.12 Aligned_cols=139 Identities=10% Similarity=0.074 Sum_probs=87.6
Q ss_pred CcceEEeecCCce--------------eeeeh-hHHHhhCCCC-----C-------ceeEEeCCCCc---------cCCc
Q 043063 160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPSI-----P-------GVTHIGGDMFK---------SIPA 203 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~-----~-------ri~~~~gd~~~---------~~p~ 203 (301)
...+|||||||+| +++|+ +.+++.|++. . +++|...|+.. +++.
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 3579999999995 57898 8888887642 1 26787877722 1233
Q ss_pred --ccEeeHhhhhcc-CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCC---C--------ChH-Hhhhhhh----ccH-
Q 043063 204 --ADAIFMKWVLTT-WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDS---N--------ESQ-RTRALLE----GDI- 263 (301)
Q Consensus 204 --~D~v~~~~vlh~-~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~---~--------~~~-~~~~~~~----~d~- 263 (301)
.|+|++..++|+ +++++..++|++++++|+|||++++..+-.+.-. . ..+ ...+... .+.
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 207 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDRI 207 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTEE
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccccccc
Confidence 499999999997 4555567999999999999999988765211000 0 000 0000000 000
Q ss_pred -HH---HhhhhccccccCHHHHHHHHHhCCCCceEEEEc
Q 043063 264 -FV---MTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV 298 (301)
Q Consensus 264 -~m---~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~ 298 (301)
.+ .+.....-...+.+++.++++++||+.+.....
T Consensus 208 ~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 208 VVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp EEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred ceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 00 000000012467899999999999999988654
No 105
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=98.80 E-value=2.7e-09 Score=88.45 Aligned_cols=87 Identities=18% Similarity=0.298 Sum_probs=68.7
Q ss_pred CCcceEEeecCCce--------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc-CCc--ccEeeHhhhhccC
Q 043063 159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTW 216 (301)
Q Consensus 159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~ 216 (301)
....+|||||||+| +++|. |.+++.+++ .+++++..+|+.+. ++. .|+|++..++|++
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~ 120 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDAL 120 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhhh
Confidence 45679999999995 46787 677766543 36899999999774 543 4999998888765
Q ss_pred C-------------hHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063 217 T-------------DDECKLIMENCYKAIPAGGKLIACEPVL 245 (301)
Q Consensus 217 ~-------------d~~~~~iL~~~~~aL~pgg~lli~e~~~ 245 (301)
. .++..++|+++++.|+|||++++.+...
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 121 LAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp TTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred ccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 5 3456799999999999999999988743
No 106
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=98.80 E-value=8.7e-09 Score=100.18 Aligned_cols=84 Identities=23% Similarity=0.277 Sum_probs=69.0
Q ss_pred CcceEEeecCCce----------------eeeeh-hHHHhhCCC------------CCceeEEeCCCCcc-CCc--ccEe
Q 043063 160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------------IPGVTHIGGDMFKS-IPA--ADAI 207 (301)
Q Consensus 160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------------~~ri~~~~gd~~~~-~p~--~D~v 207 (301)
+..+|||||||+| +++|+ +.+++.|++ ..+|+|+.+|+.+. .+. .|+|
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV 800 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG 800 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence 5679999999995 46787 777776643 25899999999864 432 5999
Q ss_pred eHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063 208 FMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV 244 (301)
Q Consensus 208 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~ 244 (301)
++..++|+++++....+++++++.|+|| .++|..+-
T Consensus 801 V~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 801 TCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 9999999999988889999999999999 77776653
No 107
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=98.78 E-value=2.2e-09 Score=88.75 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=79.8
Q ss_pred CCcceEEeecCCce--------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc-ccEeeHhhhhccC
Q 043063 159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA-ADAIFMKWVLTTW 216 (301)
Q Consensus 159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~-~D~v~~~~vlh~~ 216 (301)
.+..+|||||||+| +++|. +.+++.+++ ..+++++.+|+.+..+. .|+|++...+|+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~- 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI- 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH-
T ss_pred cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH-
Confidence 35679999999995 56787 777776654 23499999999876544 599999877764
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEE
Q 043063 217 TDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLY 296 (301)
Q Consensus 217 ~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~ 296 (301)
...+++++++.|+|||++++.+.... +.+++.++++++||+.+++.
T Consensus 138 ----~~~~l~~~~~~L~~gG~l~~~~~~~~------------------------------~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 138 ----LLDLIPQLDSHLNEDGQVIFSGIDYL------------------------------QLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp ----HHHHGGGSGGGEEEEEEEEEEEEEGG------------------------------GHHHHHHHHHHTTEEEEEEE
T ss_pred ----HHHHHHHHHHhcCCCCEEEEEecCcc------------------------------cHHHHHHHHHHcCCceEEee
Confidence 36889999999999999998654221 35677888899999888776
Q ss_pred E
Q 043063 297 R 297 (301)
Q Consensus 297 ~ 297 (301)
.
T Consensus 184 ~ 184 (205)
T 3grz_A 184 R 184 (205)
T ss_dssp E
T ss_pred c
Confidence 5
No 108
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=98.76 E-value=8.1e-09 Score=87.00 Aligned_cols=129 Identities=12% Similarity=0.093 Sum_probs=74.6
Q ss_pred CCcceEEeecCCce---------------eeeeh--hHHHhhC---CC------CCceeEEeCCCCccCCc--ccEeeHh
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL--PEVVAEA---PS------IPGVTHIGGDMFKSIPA--ADAIFMK 210 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl--p~v~~~a---~~------~~ri~~~~gd~~~~~p~--~D~v~~~ 210 (301)
....+|||||||+| +++|+ +.+++.| ++ ..+++|..+|+... |. .|+|.+.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-~~~~~d~v~~i 101 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-PFELKNIADSI 101 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-CGGGTTCEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-hhhccCeEEEE
Confidence 35679999999995 57887 3454443 43 25799999998653 43 2554444
Q ss_pred hhhccCChHH------HHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHH
Q 043063 211 WVLTTWTDDE------CKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQL 284 (301)
Q Consensus 211 ~vlh~~~d~~------~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~ 284 (301)
.+.+.|+... ...+|++++++|+|||++++...+.+.. ...+. . ..+.... .......+++.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~-~~~~~--~--~~~~~~~-----~~~~~~~~el~~~ 171 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSY-EEAEI--K--KRGLPLL-----SKAYFLSEQYKAE 171 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC-------------------C-----CHHHHHSHHHHHH
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccc-hhchh--h--hcCCCCC-----ChhhcchHHHHHH
Confidence 4433333311 1368999999999999999854433321 10000 0 0010000 0000122369999
Q ss_pred HHhCCCCceEEEEc
Q 043063 285 GFSAGFPHLRLYRV 298 (301)
Q Consensus 285 l~~aGf~~~~~~~~ 298 (301)
++++||++..+.-+
T Consensus 172 l~~aGf~v~~~~~~ 185 (225)
T 3p2e_A 172 LSNSGFRIDDVKEL 185 (225)
T ss_dssp HHHHTCEEEEEEEE
T ss_pred HHHcCCCeeeeeec
Confidence 99999998877643
No 109
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=98.74 E-value=2.7e-09 Score=92.61 Aligned_cols=86 Identities=16% Similarity=0.162 Sum_probs=63.4
Q ss_pred HhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc--
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA-- 203 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~-- 203 (301)
.++..++ +.+..+|||+|||+| +++|. |.+++.+++ .++++++.+|+.+.++.
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 4555554 667789999999995 45687 777665542 25899999999876554
Q ss_pred ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 204 ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 204 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
.|+|++ ++++. .++|+++.+.|+|||++++...
T Consensus 180 fD~Vi~-----~~~~~--~~~l~~~~~~LkpgG~l~i~~~ 212 (275)
T 1yb2_A 180 YDAVIA-----DIPDP--WNHVQKIASMMKPGSVATFYLP 212 (275)
T ss_dssp EEEEEE-----CCSCG--GGSHHHHHHTEEEEEEEEEEES
T ss_pred ccEEEE-----cCcCH--HHHHHHHHHHcCCCCEEEEEeC
Confidence 599987 45554 3899999999999999998874
No 110
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=98.73 E-value=9.7e-09 Score=90.70 Aligned_cols=138 Identities=15% Similarity=0.161 Sum_probs=89.4
Q ss_pred CcceEEeecCCce--------------eeeeh-hHHHhhCCC-------------CCceeEEeCCCCcc-----C--C--
Q 043063 160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------------IPGVTHIGGDMFKS-----I--P-- 202 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------------~~ri~~~~gd~~~~-----~--p-- 202 (301)
...+|||||||+| +++|+ +.+++.+++ ..+++++.+|+.+. + +
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 5679999999995 56787 777766543 23799999999764 2 2
Q ss_pred cccEeeHhhhhccC--ChHHHHHHHHHHHHhCCCCCEEEEeccccCC-------CCCChHHhh-----hhhhccH-----
Q 043063 203 AADAIFMKWVLTTW--TDDECKLIMENCYKAIPAGGKLIACEPVLPD-------DSNESQRTR-----ALLEGDI----- 263 (301)
Q Consensus 203 ~~D~v~~~~vlh~~--~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~-------~~~~~~~~~-----~~~~~d~----- 263 (301)
..|+|++..++|+. +.++...+|++++++|+|||++++..+..++ ......... +...-++
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 193 (313)
T 3bgv_A 114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGC 193 (313)
T ss_dssp CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCSSCC
T ss_pred CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCCccc
Confidence 24999999999987 3456779999999999999999987653210 000000000 0000000
Q ss_pred ----HH-HhhhhccccccCHHHHHHHHHhCCCCceEEEEc
Q 043063 264 ----FV-MTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV 298 (301)
Q Consensus 264 ----~m-~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~ 298 (301)
.+ .+ ........+.+++.+++++.||+.+...+.
T Consensus 194 ~~~f~l~~~-~~~~~~~~~~~~~~~l~~~~G~~~v~~~~f 232 (313)
T 3bgv_A 194 KYDFNLEGV-VDVPEFLVYFPLLNEMAKKYNMKLVYKKTF 232 (313)
T ss_dssp EEEEEEC----CCEEECCCHHHHHHHGGGGTEEEEEEEEH
T ss_pred eEEEEECCc-ccCcceEEcHHHHHHHHHHcCcEEEEecCH
Confidence 00 00 000123358899999999999999987653
No 111
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=98.71 E-value=3.2e-08 Score=85.83 Aligned_cols=107 Identities=21% Similarity=0.271 Sum_probs=79.7
Q ss_pred CcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc--ccEeeHh-----
Q 043063 160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA--ADAIFMK----- 210 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~--~D~v~~~----- 210 (301)
+..+|||||||+| +.+|. +.+++.+++ .++++++.+|+++..+. .|+|++.
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~~ 188 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYID 188 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCBC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCCC
Confidence 4579999999996 46687 777766653 25899999999887543 5999987
Q ss_pred --------hhhccCCh----------HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhcc
Q 043063 211 --------WVLTTWTD----------DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK 272 (301)
Q Consensus 211 --------~vlh~~~d----------~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~ 272 (301)
.++++.|. +...++++++.+.|+|||++++... .
T Consensus 189 ~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~------~---------------------- 240 (276)
T 2b3t_A 189 EQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG------W---------------------- 240 (276)
T ss_dssp TTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC------S----------------------
T ss_pred ccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC------c----------------------
Confidence 34444442 3457899999999999999887521 0
Q ss_pred ccccCHHHHHHHHHhCCCCceEEEE
Q 043063 273 GKHMTEQEFKQLGFSAGFPHLRLYR 297 (301)
Q Consensus 273 g~~rt~~e~~~~l~~aGf~~~~~~~ 297 (301)
.+.+++.++++++||+.+++.+
T Consensus 241 ---~~~~~~~~~l~~~Gf~~v~~~~ 262 (276)
T 2b3t_A 241 ---QQGEAVRQAFILAGYHDVETCR 262 (276)
T ss_dssp ---SCHHHHHHHHHHTTCTTCCEEE
T ss_pred ---hHHHHHHHHHHHCCCcEEEEEe
Confidence 1467788899999999887765
No 112
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=98.71 E-value=4.1e-09 Score=90.13 Aligned_cols=112 Identities=18% Similarity=0.229 Sum_probs=82.0
Q ss_pred HHhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc-
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA- 203 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~- 203 (301)
..++..++ ..+..+|||+|||+| +.+|. |.+++.+++ .+++++..+|+.+.++.
T Consensus 83 ~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 83 ALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 34555554 667889999999995 46787 777777654 35699999999877665
Q ss_pred -ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHH
Q 043063 204 -ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFK 282 (301)
Q Consensus 204 -~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~ 282 (301)
.|+|++ +.++. ..+|+++.++|+|||++++..+..+ ...++.
T Consensus 162 ~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~------------------------------~~~~~~ 204 (255)
T 3mb5_A 162 NVDHVIL-----DLPQP--ERVVEHAAKALKPGGFFVAYTPCSN------------------------------QVMRLH 204 (255)
T ss_dssp SEEEEEE-----CSSCG--GGGHHHHHHHEEEEEEEEEEESSHH------------------------------HHHHHH
T ss_pred CcCEEEE-----CCCCH--HHHHHHHHHHcCCCCEEEEEECCHH------------------------------HHHHHH
Confidence 599886 45554 4789999999999999998754211 234566
Q ss_pred HHHHhCC--CCceEEEEc
Q 043063 283 QLGFSAG--FPHLRLYRV 298 (301)
Q Consensus 283 ~~l~~aG--f~~~~~~~~ 298 (301)
+++++.| |..+++..+
T Consensus 205 ~~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 205 EKLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHHTGGGBSCCEEECC
T ss_pred HHHHHcCCCccccEEEEE
Confidence 7778888 877776543
No 113
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=98.70 E-value=2.9e-09 Score=88.16 Aligned_cols=85 Identities=18% Similarity=0.106 Sum_probs=49.1
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCCCC-----CceeEEeCCCCccCC------c-ccEeeHh
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIP------A-ADAIFMK 210 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~~-----~ri~~~~gd~~~~~p------~-~D~v~~~ 210 (301)
.+..+|||+|||+| +++|. |.+++.+++. .+++++.+|+.++++ . .|+|++.
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n 108 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN 108 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence 56789999999996 56788 7888877652 178999999887643 2 5999984
Q ss_pred ------hhhccCChHHH------------------HHHHHHHHHhCCCCCEEEEecc
Q 043063 211 ------WVLTTWTDDEC------------------KLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 211 ------~vlh~~~d~~~------------------~~iL~~~~~aL~pgg~lli~e~ 243 (301)
..+++++++.. ..+++++++.|+|||++++++.
T Consensus 109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 165 (215)
T 4dzr_A 109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV 165 (215)
T ss_dssp CCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC
T ss_pred CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 33444433322 6889999999999999666654
No 114
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=98.69 E-value=3.5e-09 Score=89.09 Aligned_cols=100 Identities=12% Similarity=0.141 Sum_probs=73.4
Q ss_pred CCcceEEeecCCce-------------eeeeh-hHHHhhCCC-CCceeEEeCCCCcc--CC-c--ccEeeHhhhhccCCh
Q 043063 159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKS--IP-A--ADAIFMKWVLTTWTD 218 (301)
Q Consensus 159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~--~p-~--~D~v~~~~vlh~~~d 218 (301)
....+|||||||+| +++|. |.+++.+++ .++++++.+|+.+. ++ . .|+|++. .+
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------~~ 120 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------RG 120 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------SC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------CC
Confidence 35679999999996 56798 778877764 47899999999764 33 3 4999886 22
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEE
Q 043063 219 DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR 297 (301)
Q Consensus 219 ~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~ 297 (301)
...+|+++++.|+|||+++.. +...+..++.++++++||....+..
T Consensus 121 --~~~~l~~~~~~LkpgG~l~~~-------------------------------~~~~~~~~~~~~l~~~Gf~~~~~~~ 166 (226)
T 3m33_A 121 --PTSVILRLPELAAPDAHFLYV-------------------------------GPRLNVPEVPERLAAVGWDIVAEDH 166 (226)
T ss_dssp --CSGGGGGHHHHEEEEEEEEEE-------------------------------ESSSCCTHHHHHHHHTTCEEEEEEE
T ss_pred --HHHHHHHHHHHcCCCcEEEEe-------------------------------CCcCCHHHHHHHHHHCCCeEEEEEe
Confidence 348899999999999999810 0111455677888888888776654
No 115
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=98.69 E-value=1.4e-08 Score=81.66 Aligned_cols=80 Identities=25% Similarity=0.418 Sum_probs=62.3
Q ss_pred CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC------C-CceeEEeCCCCccCCc----ccEeeHh
Q 043063 158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------I-PGVTHIGGDMFKSIPA----ADAIFMK 210 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~-~ri~~~~gd~~~~~p~----~D~v~~~ 210 (301)
..+..+|||||||+| +++|. |.+++.+++ . +++ ++.+|..+.+|. .|+|++.
T Consensus 23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~ 101 (178)
T 3hm2_A 23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIG 101 (178)
T ss_dssp CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEEC
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEEC
Confidence 556789999999995 56787 667776653 2 378 888998766442 5999999
Q ss_pred hhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063 211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV 244 (301)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~ 244 (301)
..+|+ ..+++++++.|+|||++++.+..
T Consensus 102 ~~~~~------~~~l~~~~~~L~~gG~l~~~~~~ 129 (178)
T 3hm2_A 102 GGLTA------PGVFAAAWKRLPVGGRLVANAVT 129 (178)
T ss_dssp C-TTC------TTHHHHHHHTCCTTCEEEEEECS
T ss_pred CcccH------HHHHHHHHHhcCCCCEEEEEeec
Confidence 99976 47899999999999999987753
No 116
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=98.69 E-value=2.7e-08 Score=82.43 Aligned_cols=79 Identities=15% Similarity=0.322 Sum_probs=61.1
Q ss_pred CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CC-ceeEEeCCCCccC---CcccEeeHhhhh
Q 043063 158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IP-GVTHIGGDMFKSI---PAADAIFMKWVL 213 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~-ri~~~~gd~~~~~---p~~D~v~~~~vl 213 (301)
.....+|||||||+| +++|. |.+++.+++ .+ +++++.+|+.+.+ +..|+|++...+
T Consensus 53 ~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~ 132 (204)
T 3njr_A 53 PRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG 132 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc
Confidence 556789999999996 56798 777777654 23 8999999998743 346999976633
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 214 TTWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
+ .. +++++.+.|+|||++++...
T Consensus 133 ----~--~~-~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 133 ----S--QA-LYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp ----C--HH-HHHHHHHHSCTTCEEEEEEC
T ss_pred ----c--HH-HHHHHHHhcCCCcEEEEEec
Confidence 2 23 99999999999999988654
No 117
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=98.69 E-value=1.9e-08 Score=81.75 Aligned_cols=92 Identities=11% Similarity=0.221 Sum_probs=70.3
Q ss_pred hhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CC--ceeEEeCCCCccCCc--ccE
Q 043063 151 ILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IP--GVTHIGGDMFKSIPA--ADA 206 (301)
Q Consensus 151 ~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~--ri~~~~gd~~~~~p~--~D~ 206 (301)
+++.+. ..+..+|||||||+| +++|. |.+++.+++ .. |++++.+|+.+..+. .|+
T Consensus 44 l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~ 122 (194)
T 1dus_A 44 LVENVV-VDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNK 122 (194)
T ss_dssp HHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEE
T ss_pred HHHHcc-cCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCCceE
Confidence 444443 556789999999996 46787 777766553 13 599999999876543 599
Q ss_pred eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063 207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV 244 (301)
Q Consensus 207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~ 244 (301)
|++...+|+ ..+....+++++++.|+|||++++....
T Consensus 123 v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 123 IITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp EEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred EEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 999888764 4455679999999999999999998763
No 118
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=98.64 E-value=4.7e-08 Score=85.14 Aligned_cols=80 Identities=19% Similarity=0.286 Sum_probs=64.2
Q ss_pred CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc--ccEeeHhhhh
Q 043063 158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA--ADAIFMKWVL 213 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~--~D~v~~~~vl 213 (301)
..+..+|||||||+| +++|. |++++.|++ .++|+|+.+|+.+ +|. .|+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-l~d~~FDvV~~~a~- 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-IDGLEFDVLMVAAL- 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-GGGCCCSEEEECTT-
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-CCCCCcCEEEECCC-
Confidence 667899999999973 56798 888888764 2799999999875 343 599987654
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 214 TTWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
.++. .++++++++.|+|||+|++.+.
T Consensus 198 --~~d~--~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 198 --AEPK--RRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp --CSCH--HHHHHHHHHHCCTTCEEEEEEC
T ss_pred --ccCH--HHHHHHHHHHcCCCcEEEEEcC
Confidence 3443 5999999999999999999874
No 119
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=98.64 E-value=2.6e-08 Score=80.76 Aligned_cols=88 Identities=15% Similarity=0.117 Sum_probs=61.7
Q ss_pred CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc--CC-c-ccEeeHh-hh
Q 043063 158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS--IP-A-ADAIFMK-WV 212 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~--~p-~-~D~v~~~-~v 212 (301)
..+..+|||||||+| +.+|. |.+++.+++ .++++++.+|+... .+ . .|+|++. ..
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~ 99 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGY 99 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence 456789999999996 57897 888877764 27899999776541 22 3 5999876 33
Q ss_pred hccC------ChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063 213 LTTW------TDDECKLIMENCYKAIPAGGKLIACEPVL 245 (301)
Q Consensus 213 lh~~------~d~~~~~iL~~~~~aL~pgg~lli~e~~~ 245 (301)
++.. ..+....+|+++++.|+|||++++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 138 (185)
T 3mti_A 100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYG 138 (185)
T ss_dssp ----------CHHHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 3220 22456788999999999999999887643
No 120
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=98.62 E-value=1.1e-09 Score=93.85 Aligned_cols=131 Identities=11% Similarity=0.061 Sum_probs=81.2
Q ss_pred CcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCc----cCC----c-ccEe
Q 043063 160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFK----SIP----A-ADAI 207 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~----~~p----~-~D~v 207 (301)
...+|||||||+| +++|. |.+++.|++ .++++++.+|+.+ +++ . .|+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 4579999999995 46787 777776653 2579999999543 444 2 5999
Q ss_pred eHhhhhccCCh-------------HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhcccc
Q 043063 208 FMKWVLTTWTD-------------DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGK 274 (301)
Q Consensus 208 ~~~~vlh~~~d-------------~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~ 274 (301)
++.-.+|...+ +....++++++++|+|||.+.+++.+.... ........ +.. ...+.
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~------~~~l~~~g--~~~--~~~~~ 214 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDS------LQLKKRLR--WYS--CMLGK 214 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHH------HHHGGGBS--CEE--EEESS
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHH------HhcccceE--EEE--ECCCC
Confidence 99855554331 112356788999999999988887654321 01110011 010 11244
Q ss_pred ccCHHHHHHHHHhCCCCceEEEEccC
Q 043063 275 HMTEQEFKQLGFSAGFPHLRLYRVLD 300 (301)
Q Consensus 275 ~rt~~e~~~~l~~aGf~~~~~~~~~~ 300 (301)
..+.+++.++++++||+.+++.++..
T Consensus 215 ~~~~~~~~~~l~~~Gf~~v~~~~~~~ 240 (254)
T 2h00_A 215 KCSLAPLKEELRIQGVPKVTYTEFCQ 240 (254)
T ss_dssp TTSHHHHHHHHHHTTCSEEEEEEEEE
T ss_pred hhHHHHHHHHHHHcCCCceEEEEEec
Confidence 45668999999999999998887653
No 121
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=98.62 E-value=1.3e-08 Score=82.64 Aligned_cols=81 Identities=21% Similarity=0.215 Sum_probs=63.3
Q ss_pred CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC---cccEeeHhhhh
Q 043063 158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP---AADAIFMKWVL 213 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p---~~D~v~~~~vl 213 (301)
..+..+|||+|||+| +++|. +.+++.+++ .+++++..+|+.+.++ ..|+|++..++
T Consensus 31 ~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 110 (192)
T 1l3i_A 31 PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSG 110 (192)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCT
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCCEEEECCch
Confidence 556689999999996 46787 777766553 2689999999876443 35999998776
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 214 TTWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
|+ ...+|+++++.|+|||++++...
T Consensus 111 ~~-----~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 111 GE-----LQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp TC-----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred HH-----HHHHHHHHHHhcCCCcEEEEEec
Confidence 53 36899999999999999988654
No 122
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=98.60 E-value=1.2e-08 Score=87.62 Aligned_cols=83 Identities=17% Similarity=0.229 Sum_probs=62.5
Q ss_pred CcceEEeecCCce-------------eeeeh-hHHHhhCCCCCceeEEeCCCCcc-CCc--ccEeeHhhhhccCChHHHH
Q 043063 160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDECK 222 (301)
Q Consensus 160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~~~ 222 (301)
+..+|||||||+| +++|. +.+++.+++...-.++.+|+.+. ++. .|+|++..+++++.++ ..
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~-~~ 132 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN-KD 132 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-HH
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-HH
Confidence 5679999999996 56787 77777765422123888888764 443 4999998866665332 57
Q ss_pred HHHHHHHHhCCCCCEEEEecc
Q 043063 223 LIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 223 ~iL~~~~~aL~pgg~lli~e~ 243 (301)
.+|+++++.|+|||++++...
T Consensus 133 ~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 133 KAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp HHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCCeEEEEEeC
Confidence 999999999999999998765
No 123
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=98.59 E-value=2.1e-08 Score=88.28 Aligned_cols=114 Identities=15% Similarity=0.180 Sum_probs=77.7
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCccC---Cc--ccEe
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA--ADAI 207 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~~---p~--~D~v 207 (301)
.+..+|||||||+| +++|+ |.+++.+++ .+|++++.+|+.+.. +. .|+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 35679999999996 46787 777766543 368999999987641 33 4999
Q ss_pred eHhhhhccCChHHH--HHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHH
Q 043063 208 FMKWVLTTWTDDEC--KLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLG 285 (301)
Q Consensus 208 ~~~~vlh~~~d~~~--~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l 285 (301)
++....+.+++... ..++++++++|+|||++++..... +.+ ..+..++.+.+
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~--------------~~~------------~~~~~~~~~~l 227 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI--------------WLD------------LELIEKMSRFI 227 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT--------------TTC------------HHHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc--------------ccc------------hHHHHHHHHHH
Confidence 99776665554332 589999999999999998873210 000 01467788899
Q ss_pred HhCCCCceEEEEc
Q 043063 286 FSAGFPHLRLYRV 298 (301)
Q Consensus 286 ~~aGf~~~~~~~~ 298 (301)
+++||..+++...
T Consensus 228 ~~~GF~~v~~~~~ 240 (304)
T 3bwc_A 228 RETGFASVQYALM 240 (304)
T ss_dssp HHHTCSEEEEEEC
T ss_pred HhCCCCcEEEEEe
Confidence 9999998877643
No 124
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=98.59 E-value=9.6e-08 Score=87.71 Aligned_cols=96 Identities=15% Similarity=0.276 Sum_probs=68.8
Q ss_pred HHhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhC-------CC--------CCceeEEeCCC
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEA-------PS--------IPGVTHIGGDM 197 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a-------~~--------~~ri~~~~gd~ 197 (301)
..++..++ .....+|||||||+| +++|+ +..++.| ++ ..+|+++.+|.
T Consensus 232 ~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~ 310 (433)
T 1u2z_A 232 SDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 310 (433)
T ss_dssp HHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence 34555554 667789999999996 46687 5555544 32 26899998755
Q ss_pred Cc-c--C----CcccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCC
Q 043063 198 FK-S--I----PAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDD 248 (301)
Q Consensus 198 ~~-~--~----p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~ 248 (301)
+. . + ...|+|++..+++ . ++....|+++.+.|+|||+|++.+...+.+
T Consensus 311 ~~~~~~~~~~~~~FDvIvvn~~l~--~-~d~~~~L~el~r~LKpGG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 311 FVDNNRVAELIPQCDVILVNNFLF--D-EDLNKKVEKILQTAKVGCKIISLKSLRSLT 365 (433)
T ss_dssp STTCHHHHHHGGGCSEEEECCTTC--C-HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred cccccccccccCCCCEEEEeCccc--c-ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence 43 2 2 2259999877763 2 345678999999999999999999877654
No 125
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=98.57 E-value=3.4e-08 Score=84.70 Aligned_cols=105 Identities=16% Similarity=0.250 Sum_probs=77.9
Q ss_pred CCcceEEeecCCce-------------eeeeh-hHHHhhCCCC---C--ceeEEeCCCCccCCc--ccEeeHhhhhccCC
Q 043063 159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI---P--GVTHIGGDMFKSIPA--ADAIFMKWVLTTWT 217 (301)
Q Consensus 159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~---~--ri~~~~gd~~~~~p~--~D~v~~~~vlh~~~ 217 (301)
.+..+|||+|||+| +++|. |..++.+++. . .+++..+|+.+.++. .|+|++....|
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~--- 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE--- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH---
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH---
Confidence 35679999999996 46787 7776665531 1 189999998765543 59999865443
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEE
Q 043063 218 DDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR 297 (301)
Q Consensus 218 d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~ 297 (301)
....+++++++.|+|||++++.+...+ +.+++.++++++||+++++..
T Consensus 196 --~~~~~l~~~~~~LkpgG~lils~~~~~------------------------------~~~~v~~~l~~~Gf~~~~~~~ 243 (254)
T 2nxc_A 196 --LHAALAPRYREALVPGGRALLTGILKD------------------------------RAPLVREAMAGAGFRPLEEAA 243 (254)
T ss_dssp --HHHHHHHHHHHHEEEEEEEEEEEEEGG------------------------------GHHHHHHHHHHTTCEEEEEEE
T ss_pred --HHHHHHHHHHHHcCCCCEEEEEeeccC------------------------------CHHHHHHHHHHCCCEEEEEec
Confidence 356899999999999999998654211 367788999999999988765
Q ss_pred c
Q 043063 298 V 298 (301)
Q Consensus 298 ~ 298 (301)
.
T Consensus 244 ~ 244 (254)
T 2nxc_A 244 E 244 (254)
T ss_dssp E
T ss_pred c
Confidence 3
No 126
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=98.56 E-value=4.9e-08 Score=83.34 Aligned_cols=86 Identities=17% Similarity=0.300 Sum_probs=66.6
Q ss_pred HhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc-
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA- 203 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~- 203 (301)
.++..++ +.+..+|||+|||+| +.+|. |.+++.+++ .+++++..+|+.+. ++.
T Consensus 87 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 165 (258)
T 2pwy_A 87 AMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEA 165 (258)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTT
T ss_pred HHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCC
Confidence 4556664 777889999999995 45686 777666543 36899999999876 664
Q ss_pred -ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 204 -ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 204 -~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
.|+|++ ++++. ..+|+++.++|+|||++++..+
T Consensus 166 ~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~~ 199 (258)
T 2pwy_A 166 AYDGVAL-----DLMEP--WKVLEKAALALKPDRFLVAYLP 199 (258)
T ss_dssp CEEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEES
T ss_pred CcCEEEE-----CCcCH--HHHHHHHHHhCCCCCEEEEEeC
Confidence 599987 45554 3889999999999999999775
No 127
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=98.56 E-value=6.6e-08 Score=84.19 Aligned_cols=134 Identities=13% Similarity=0.134 Sum_probs=81.2
Q ss_pred HhhhcCCCCC-CcceEEeecCCce--------------eeeeh-hHHHhh-CCCCCceeEEe-CCCCc----cCCc--cc
Q 043063 150 SILDGYDGFK-GVKRLVDVGGSAG--------------INFDL-PEVVAE-APSIPGVTHIG-GDMFK----SIPA--AD 205 (301)
Q Consensus 150 ~~~~~~~~~~-~~~~vlDvGgG~g--------------~~~Dl-p~v~~~-a~~~~ri~~~~-gd~~~----~~p~--~D 205 (301)
.++..+. .. ...++||||||+| +.+|+ +.+++. .+...|+..+. .|+.. .+|. .|
T Consensus 75 ~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD 153 (291)
T 3hp7_A 75 KALAVFN-LSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPS 153 (291)
T ss_dssp HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCS
T ss_pred HHHHhcC-CCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCC
Confidence 3444453 33 3569999999996 45787 666655 33346665543 34321 1443 48
Q ss_pred EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEe-ccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHH
Q 043063 206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIAC-EPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQL 284 (301)
Q Consensus 206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~-e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~ 284 (301)
++++...+|++ ..+|+.+++.|+|||+++++ .+-.+..+ .......-..|.. -..+..+++.++
T Consensus 154 ~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~--~~~~~~G~vrd~~--------~~~~~~~~v~~~ 218 (291)
T 3hp7_A 154 FASIDVSFISL-----NLILPALAKILVDGGQVVALVKPQFEAGR--EQIGKNGIVRESS--------IHEKVLETVTAF 218 (291)
T ss_dssp EEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEECGGGTSCG--GGCC-CCCCCCHH--------HHHHHHHHHHHH
T ss_pred EEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEECcccccCh--hhcCCCCccCCHH--------HHHHHHHHHHHH
Confidence 88887777654 47999999999999999886 11111110 0000000111111 112368899999
Q ss_pred HHhCCCCceEEEEcc
Q 043063 285 GFSAGFPHLRLYRVL 299 (301)
Q Consensus 285 l~~aGf~~~~~~~~~ 299 (301)
++++||.+..+...+
T Consensus 219 ~~~~Gf~v~~~~~sp 233 (291)
T 3hp7_A 219 AVDYGFSVKGLDFSP 233 (291)
T ss_dssp HHHTTEEEEEEEECS
T ss_pred HHHCCCEEEEEEECC
Confidence 999999988877654
No 128
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=98.55 E-value=2.3e-07 Score=77.72 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=75.0
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hHHHh----hCCCCCceeEEeCCCCcc-----CCc-ccEeeHh
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PEVVA----EAPSIPGVTHIGGDMFKS-----IPA-ADAIFMK 210 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~----~a~~~~ri~~~~gd~~~~-----~p~-~D~v~~~ 210 (301)
+.+..+|||+|||+| +++|. +.+++ .++..++++++.+|+.+. .+. .|+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 556789999999995 35676 54443 334457999999999873 233 4999854
Q ss_pred hhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCC
Q 043063 211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF 290 (301)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf 290 (301)
.. .......+++++++.|+|||++++. ...... ...+ ... ..+.+++.++ +++ |
T Consensus 151 ~~----~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~-~~~~--------~~~----------~~~~~~l~~l-~~~-f 204 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSI-DVTK--------EPE----------QVFREVEREL-SEY-F 204 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGT-CTTS--------CHH----------HHHHHHHHHH-HTT-S
T ss_pred CC----CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCC-CCCC--------Chh----------hhhHHHHHHH-Hhh-c
Confidence 32 2223345599999999999999988 221111 1010 000 1146777777 777 9
Q ss_pred CceEEEEcc
Q 043063 291 PHLRLYRVL 299 (301)
Q Consensus 291 ~~~~~~~~~ 299 (301)
+.++...+.
T Consensus 205 ~~~~~~~~~ 213 (227)
T 1g8a_A 205 EVIERLNLE 213 (227)
T ss_dssp EEEEEEECT
T ss_pred eeeeEeccC
Confidence 998887653
No 129
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=98.55 E-value=6.8e-08 Score=81.13 Aligned_cols=110 Identities=15% Similarity=0.212 Sum_probs=75.6
Q ss_pred CCCcceEEeecCC-ce--------------eeeeh-hHHHhhCCC-----CCceeEEeCCC--CccCCc--ccEeeHhhh
Q 043063 158 FKGVKRLVDVGGS-AG--------------INFDL-PEVVAEAPS-----IPGVTHIGGDM--FKSIPA--ADAIFMKWV 212 (301)
Q Consensus 158 ~~~~~~vlDvGgG-~g--------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~--~~~~p~--~D~v~~~~v 212 (301)
.++..+||||||| +| +++|. |.+++.+++ ..+++++.+|+ +.+++. .|+|++.-.
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp 132 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP 132 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCC
Confidence 4567899999999 85 46787 777777653 12799999996 334543 599998766
Q ss_pred hccCChHH-----------------HHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccc
Q 043063 213 LTTWTDDE-----------------CKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKH 275 (301)
Q Consensus 213 lh~~~d~~-----------------~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~ 275 (301)
+|..++.. ...+|+++.+.|+|||++++.-+.. +
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------~---------------------- 183 (230)
T 3evz_A 133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK-------E---------------------- 183 (230)
T ss_dssp CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC-------H----------------------
T ss_pred CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc-------H----------------------
Confidence 65544322 3689999999999999999863210 0
Q ss_pred cCHHHHHHHHHhCCCCceEEE
Q 043063 276 MTEQEFKQLGFSAGFPHLRLY 296 (301)
Q Consensus 276 rt~~e~~~~l~~aGf~~~~~~ 296 (301)
.+..++.+++++.||....+.
T Consensus 184 ~~~~~~~~~l~~~g~~~~~~~ 204 (230)
T 3evz_A 184 KLLNVIKERGIKLGYSVKDIK 204 (230)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHHHHHHHcCCceEEEE
Confidence 035677788888998665553
No 130
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=98.55 E-value=5.8e-08 Score=78.08 Aligned_cols=78 Identities=17% Similarity=0.159 Sum_probs=60.9
Q ss_pred CCCcceEEeecCCce-------------eeeeh-hHHHhhCCCC------CceeEEeCCCCccCCc--ccEeeHhhhhcc
Q 043063 158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA--ADAIFMKWVLTT 215 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~------~ri~~~~gd~~~~~p~--~D~v~~~~vlh~ 215 (301)
.....+|||||||+| +++|. |.+++.+++. ++++++.+|+.++++. .|+|++..+
T Consensus 33 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~~--- 109 (183)
T 2yxd_A 33 LNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFNKAFIGGT--- 109 (183)
T ss_dssp CCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCSEEEECSC---
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCcEEEECCc---
Confidence 455679999999996 46787 7777766542 6899999999876554 599999887
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 216 WTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
.....+++++++. |||++++...
T Consensus 110 ---~~~~~~l~~~~~~--~gG~l~~~~~ 132 (183)
T 2yxd_A 110 ---KNIEKIIEILDKK--KINHIVANTI 132 (183)
T ss_dssp ---SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred ---ccHHHHHHHHhhC--CCCEEEEEec
Confidence 2345889998887 9999998774
No 131
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=98.54 E-value=2.2e-08 Score=93.54 Aligned_cols=92 Identities=16% Similarity=0.170 Sum_probs=71.5
Q ss_pred HHhhhcCCCCCCcceEEeecCCce--------------eeeehhHHHhhCCC-------CCceeEEeCCCCcc-CCc-cc
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKS-IPA-AD 205 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~-~p~-~D 205 (301)
..+++.++ .....+|||||||+| +++|...+++.|++ .++|+++.+|+.+. +|. .|
T Consensus 148 ~~il~~l~-~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD 226 (480)
T 3b3j_A 148 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVD 226 (480)
T ss_dssp HHHHHTGG-GTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEE
T ss_pred HHHHHhhh-hcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeE
Confidence 34555543 445679999999995 56788656665543 27899999999873 555 59
Q ss_pred EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063 206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIAC 241 (301)
Q Consensus 206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~ 241 (301)
+|++..++|++.+++....+.++++.|+|||++++.
T Consensus 227 ~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 227 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp EEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred EEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999988888888777788899999999999998853
No 132
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=98.53 E-value=2.4e-08 Score=89.42 Aligned_cols=94 Identities=16% Similarity=0.217 Sum_probs=70.5
Q ss_pred HHhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCccCCc-ccE
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKSIPA-ADA 206 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p~-~D~ 206 (301)
..+++.++ .....+|||||||+| +++|. +.+++.+++ ...++++.+|+++..+. .|+
T Consensus 186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~ 264 (343)
T 2pjd_A 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDM 264 (343)
T ss_dssp HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEE
T ss_pred HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeE
Confidence 34455553 334568999999996 56787 667766653 23467889998865443 599
Q ss_pred eeHhhhhcc---CChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 207 IFMKWVLTT---WTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 207 v~~~~vlh~---~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
|++..++|+ ++.+...++|+++++.|+|||++++...
T Consensus 265 Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 265 IISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp EEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred EEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 999999986 3455678999999999999999999765
No 133
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=98.53 E-value=1.8e-08 Score=90.40 Aligned_cols=85 Identities=15% Similarity=0.142 Sum_probs=66.7
Q ss_pred CCCcceEEeecCCce--------------eeeehhHHHhhCCC-------CCceeEEeCCCCcc-CCc-ccEeeHhhhhc
Q 043063 158 FKGVKRLVDVGGSAG--------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKS-IPA-ADAIFMKWVLT 214 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g--------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh 214 (301)
..+..+|||||||+| +++|..++++.+++ .++|+++.+|+.+. .|. .|+|++..++|
T Consensus 48 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 127 (348)
T 2y1w_A 48 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY 127 (348)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEECCCBT
T ss_pred cCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCceeEEEEeCchh
Confidence 345679999999996 45677555555442 27899999999864 554 59999999988
Q ss_pred cCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063 215 TWTDDECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 215 ~~~d~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
++..+.....+.++++.|+|||++++.-
T Consensus 128 ~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 128 MLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp TBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred cCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 8887777788999999999999988543
No 134
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=98.52 E-value=5.7e-08 Score=80.39 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=65.4
Q ss_pred hhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC-c--ccEee
Q 043063 152 LDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP-A--ADAIF 208 (301)
Q Consensus 152 ~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p-~--~D~v~ 208 (301)
+..++ ..+..+|||||||+| +.+|. |.+++.+++ .+++++..+|..+..+ . .|+|+
T Consensus 70 ~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~ 148 (210)
T 3lbf_A 70 TELLE-LTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAII 148 (210)
T ss_dssp HHHTT-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEE
T ss_pred HHhcC-CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEE
Confidence 34443 567789999999996 56787 777776653 3579999999987633 2 49999
Q ss_pred HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063 209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV 244 (301)
Q Consensus 209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~ 244 (301)
+..++|++++ .+++.|+|||++++.-..
T Consensus 149 ~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 149 VTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp ESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred EccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 9999999886 367899999999887654
No 135
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=98.51 E-value=1.6e-07 Score=80.52 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=60.7
Q ss_pred CC-CcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---CCc--ccEeeH
Q 043063 158 FK-GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---IPA--ADAIFM 209 (301)
Q Consensus 158 ~~-~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~p~--~D~v~~ 209 (301)
.. +..+|||+|||+| +++|+ |.+++.+++ .+|++++.+|+.+. ++. .|+|++
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~ 125 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTC 125 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEE
Confidence 55 6789999999996 46787 777776653 25899999999865 222 499998
Q ss_pred hhhhccC------------------ChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063 210 KWVLTTW------------------TDDECKLIMENCYKAIPAGGKLIAC 241 (301)
Q Consensus 210 ~~vlh~~------------------~d~~~~~iL~~~~~aL~pgg~lli~ 241 (301)
.-.++.. .......+++.+.+.|+|||+++++
T Consensus 126 npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 175 (259)
T 3lpm_A 126 NPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV 175 (259)
T ss_dssp CCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE
Confidence 5333211 1133467999999999999999984
No 136
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=98.50 E-value=2.1e-08 Score=84.84 Aligned_cols=119 Identities=21% Similarity=0.239 Sum_probs=68.3
Q ss_pred CcceEEeecCCce--------------eeeeh-hHHHhhCCC-CCce--------eEEe-CCCCccCCc---ccEeeHhh
Q 043063 160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-IPGV--------THIG-GDMFKSIPA---ADAIFMKW 211 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-~~ri--------~~~~-gd~~~~~p~---~D~v~~~~ 211 (301)
...+|||||||+| +.+|+ +.+++.+++ ..++ .+.. .|+....+. .|+++++.
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~l 116 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFISL 116 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSCG
T ss_pred CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhhH
Confidence 3569999999996 46787 666655432 2333 2322 232221122 36655442
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHh--hhhhhccHHHHhhhhccccccCHHHHHHHHHhCC
Q 043063 212 VLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRT--RALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAG 289 (301)
Q Consensus 212 vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~--~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aG 289 (301)
.++|+++++.|+|||++++.- .+.- ...+.. ......|... ...+.++|.++++++|
T Consensus 117 ----------~~~l~~i~rvLkpgG~lv~~~--~p~~-e~~~~~~~~~G~~~d~~~--------~~~~~~~l~~~l~~aG 175 (232)
T 3opn_A 117 ----------DLILPPLYEILEKNGEVAALI--KPQF-EAGREQVGKNGIIRDPKV--------HQMTIEKVLKTATQLG 175 (232)
T ss_dssp ----------GGTHHHHHHHSCTTCEEEEEE--CHHH-HSCHHHHC-CCCCCCHHH--------HHHHHHHHHHHHHHHT
T ss_pred ----------HHHHHHHHHhccCCCEEEEEE--Cccc-ccCHHHhCcCCeecCcch--------hHHHHHHHHHHHHHCC
Confidence 479999999999999998852 1100 000000 0000011111 1237899999999999
Q ss_pred CCceEEEEcc
Q 043063 290 FPHLRLYRVL 299 (301)
Q Consensus 290 f~~~~~~~~~ 299 (301)
|++..+...+
T Consensus 176 f~v~~~~~~p 185 (232)
T 3opn_A 176 FSVKGLTFSP 185 (232)
T ss_dssp EEEEEEEECS
T ss_pred CEEEEEEEcc
Confidence 9998877543
No 137
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=98.50 E-value=1.6e-07 Score=79.29 Aligned_cols=116 Identities=12% Similarity=0.202 Sum_probs=72.2
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hHH----HhhCCCCCceeEEeCCCCcc-----CCc-ccEeeHh
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PEV----VAEAPSIPGVTHIGGDMFKS-----IPA-ADAIFMK 210 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v----~~~a~~~~ri~~~~gd~~~~-----~p~-~D~v~~~ 210 (301)
+++..+|||+|||+| +.+|. |.+ ++.+++..+|.++.+|...+ ++. .|+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 667899999999995 35687 544 34444457899999998764 122 5998865
Q ss_pred hhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCC
Q 043063 211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF 290 (301)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf 290 (301)
... ++ ....+++.+++.|+|||+|++.-.....+.. ..-.+ ..++....|+++||
T Consensus 154 ~a~---~~-~~~il~~~~~~~LkpGG~lvisik~~~~d~t--------------------~~~~e-~~~~~~~~L~~~gf 208 (232)
T 3id6_C 154 IAQ---PD-QTDIAIYNAKFFLKVNGDMLLVIKARSIDVT--------------------KDPKE-IYKTEVEKLENSNF 208 (232)
T ss_dssp CCC---TT-HHHHHHHHHHHHEEEEEEEEEEEC---------------------------CCSSS-STTHHHHHHHHTTE
T ss_pred CCC---hh-HHHHHHHHHHHhCCCCeEEEEEEccCCcccC--------------------CCHHH-HHHHHHHHHHHCCC
Confidence 332 33 2233455666699999999987321111100 00011 22334456778899
Q ss_pred CceEEEEc
Q 043063 291 PHLRLYRV 298 (301)
Q Consensus 291 ~~~~~~~~ 298 (301)
+..+...+
T Consensus 209 ~~~~~~~l 216 (232)
T 3id6_C 209 ETIQIINL 216 (232)
T ss_dssp EEEEEEEC
T ss_pred EEEEEecc
Confidence 99998876
No 138
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=98.49 E-value=3.3e-08 Score=83.89 Aligned_cols=106 Identities=16% Similarity=0.137 Sum_probs=75.3
Q ss_pred CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-C----Cc-ccEeeH
Q 043063 158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-I----PA-ADAIFM 209 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~----p~-~D~v~~ 209 (301)
+.+..+|||||||+| +++|. +.+++.+++ ..+|+++.+|+.+. . +. .|+|++
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence 445679999999996 46787 767766653 24799999998653 2 22 499998
Q ss_pred hhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCC
Q 043063 210 KWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAG 289 (301)
Q Consensus 210 ~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aG 289 (301)
..+ .+ ...+++.+++.|+|||++++.+.... .. ...++.+.+++.|
T Consensus 148 ~~~----~~--~~~~l~~~~~~LkpgG~l~~~~g~~~-------~~---------------------~~~~~~~~l~~~g 193 (240)
T 1xdz_A 148 RAV----AR--LSVLSELCLPLVKKNGLFVALKAASA-------EE---------------------ELNAGKKAITTLG 193 (240)
T ss_dssp ECC----SC--HHHHHHHHGGGEEEEEEEEEEECC-C-------HH---------------------HHHHHHHHHHHTT
T ss_pred ecc----CC--HHHHHHHHHHhcCCCCEEEEEeCCCc-------hH---------------------HHHHHHHHHHHcC
Confidence 663 33 46899999999999999988632110 00 1345667888899
Q ss_pred CCceEEEE
Q 043063 290 FPHLRLYR 297 (301)
Q Consensus 290 f~~~~~~~ 297 (301)
|...++.+
T Consensus 194 ~~~~~~~~ 201 (240)
T 1xdz_A 194 GELENIHS 201 (240)
T ss_dssp EEEEEEEE
T ss_pred CeEeEEEE
Confidence 98877765
No 139
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=98.49 E-value=7.9e-08 Score=87.11 Aligned_cols=92 Identities=14% Similarity=0.179 Sum_probs=68.6
Q ss_pred HhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCCC---------CceeEEeCCCCccCCc-
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPSI---------PGVTHIGGDMFKSIPA- 203 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~~---------~ri~~~~gd~~~~~p~- 203 (301)
.+++.++ .....+|||+|||+| +.+|. +.+++.+++. .+++|..+|++++++.
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 3455554 444589999999996 46787 7777776541 2688999999987664
Q ss_pred -ccEeeHhhhhcc---CChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063 204 -ADAIFMKWVLTT---WTDDECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 204 -~D~v~~~~vlh~---~~d~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
.|+|++.-.+|. .++....++++++++.|+|||+++++.
T Consensus 292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 599999988884 445556689999999999999999864
No 140
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=98.47 E-value=1.7e-07 Score=76.33 Aligned_cols=86 Identities=10% Similarity=0.039 Sum_probs=66.5
Q ss_pred CcceEEeecCCce--------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CC-c-ccEeeHhhhh
Q 043063 160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IP-A-ADAIFMKWVL 213 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p-~-~D~v~~~~vl 213 (301)
...+|||+|||+| +.+|. |.+++.+++ .++++++.+|+.+. ++ . .|+|++...+
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~ 123 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPY 123 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCT
T ss_pred CCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCC
Confidence 4578999999996 56787 778777664 25899999998764 22 2 5999998776
Q ss_pred ccCChHHHHHHHHHHHH--hCCCCCEEEEeccccC
Q 043063 214 TTWTDDECKLIMENCYK--AIPAGGKLIACEPVLP 246 (301)
Q Consensus 214 h~~~d~~~~~iL~~~~~--aL~pgg~lli~e~~~~ 246 (301)
|.. .++..++++.+.+ .|+|||++++......
T Consensus 124 ~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~ 157 (189)
T 3p9n_A 124 NVD-SADVDAILAALGTNGWTREGTVAVVERATTC 157 (189)
T ss_dssp TSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred Ccc-hhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence 543 3456799999999 9999999998776443
No 141
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=98.47 E-value=7.7e-08 Score=83.39 Aligned_cols=87 Identities=26% Similarity=0.412 Sum_probs=66.0
Q ss_pred HHhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc-
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA- 203 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~- 203 (301)
..++..++ +.+..+|||+|||+| +.+|. |..++.+++ .+++++..+|+.+.++.
T Consensus 102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 180 (277)
T 1o54_A 102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 180 (277)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence 34555564 667789999999995 45676 777666553 15899999999876654
Q ss_pred -ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 204 -ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 204 -~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
.|+|++ +.++. ..+|+++.++|+|||++++...
T Consensus 181 ~~D~V~~-----~~~~~--~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 181 DVDALFL-----DVPDP--WNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp SEEEEEE-----CCSCG--GGTHHHHHHHEEEEEEEEEEES
T ss_pred ccCEEEE-----CCcCH--HHHHHHHHHHcCCCCEEEEEeC
Confidence 599987 34544 3889999999999999998775
No 142
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=98.46 E-value=1.3e-07 Score=78.58 Aligned_cols=81 Identities=14% Similarity=0.250 Sum_probs=58.1
Q ss_pred CCCcceEEeecCCce---------------eeeeh-hHH----HhhCCCCCceeEEeCCCCcc-----CCc-ccEeeHhh
Q 043063 158 FKGVKRLVDVGGSAG---------------INFDL-PEV----VAEAPSIPGVTHIGGDMFKS-----IPA-ADAIFMKW 211 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v----~~~a~~~~ri~~~~gd~~~~-----~p~-~D~v~~~~ 211 (301)
..+..+|||||||+| +++|. |.+ .+.+++..++.++.+|+..+ ++. .|+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 556789999999996 45687 543 44444456899999998763 233 4999876
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063 212 VLTTWTDDECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 212 vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
+.+ .++...+|+++++.|+|||++++.-
T Consensus 134 ~~~---~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 134 IAQ---KNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp CCS---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccC---hhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 222 2334466999999999999999883
No 143
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=98.45 E-value=2.3e-07 Score=78.73 Aligned_cols=115 Identities=11% Similarity=0.024 Sum_probs=82.0
Q ss_pred CcceEEeecCCce---------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCccCC-c-ccEeeHhhhhccC
Q 043063 160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKSIP-A-ADAIFMKWVLTTW 216 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p-~-~D~v~~~~vlh~~ 216 (301)
...+|||||||.| +.+|+ +.+++.+++ ..+.++...|+....| . +|++++.-++|++
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~L 211 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPCL 211 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHHH
T ss_pred CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHHh
Confidence 4689999999996 46787 666666553 2458889999987744 3 6999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEE
Q 043063 217 TDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRL 295 (301)
Q Consensus 217 ~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~ 295 (301)
.++.....+ ++.++|+|+|.++..+.-.=.++. + .++ ......|.+.+.+.|+.+.++
T Consensus 212 e~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs--~------gm~------------~~Y~~~~e~~~~~~g~~~~~~ 269 (281)
T 3lcv_B 212 ETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRS--K------GMF------------QNYSQSFESQARERSCRIQRL 269 (281)
T ss_dssp HHHSTTHHH-HHHHHSSCSEEEEEEECC---------------CHH------------HHHHHHHHHHHHHHTCCEEEE
T ss_pred hhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCC--c------chh------------hHHHHHHHHHHHhcCCceeee
Confidence 988766677 899999999988888762211111 1 111 113678888898888855443
No 144
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=98.41 E-value=1.5e-07 Score=78.96 Aligned_cols=86 Identities=19% Similarity=0.258 Sum_probs=65.3
Q ss_pred HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC----CCceeEEeCCCCccCC-c--ccEee
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKSIP-A--ADAIF 208 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~~p-~--~D~v~ 208 (301)
.+++.+. ..+..+|||||||+| +++|. +.+++.+++ ..+++++.+|+.+..+ . .|+|+
T Consensus 61 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 139 (231)
T 1vbf_A 61 FMLDELD-LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVV 139 (231)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEE
T ss_pred HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEE
Confidence 3444443 556789999999996 56787 777766653 2389999999987543 2 49999
Q ss_pred HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063 209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV 244 (301)
Q Consensus 209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~ 244 (301)
+..++|++++ ++.+.|+|||++++....
T Consensus 140 ~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 140 VWATAPTLLC--------KPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp ESSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred ECCcHHHHHH--------HHHHHcCCCcEEEEEEcC
Confidence 9999998875 477899999999988653
No 145
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=98.41 E-value=8.1e-07 Score=74.41 Aligned_cols=79 Identities=14% Similarity=0.064 Sum_probs=61.1
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc---ccEeeHhhh
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA---ADAIFMKWV 212 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~---~D~v~~~~v 212 (301)
++..+|+|||||+| +.+|. |..++.|++ .++|++..+|.++.++. .|+|++..+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 35679999999995 45687 777766653 36899999999987652 598887654
Q ss_pred hccCChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063 213 LTTWTDDECKLIMENCYKAIPAGGKLIAC 241 (301)
Q Consensus 213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~ 241 (301)
..+-...||..+.+.|+|+|++++.
T Consensus 94 ----Gg~~i~~Il~~~~~~L~~~~~lVlq 118 (225)
T 3kr9_A 94 ----GGRLIARILEEGLGKLANVERLILQ 118 (225)
T ss_dssp ----CHHHHHHHHHHTGGGCTTCCEEEEE
T ss_pred ----ChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3444679999999999999987763
No 146
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=98.41 E-value=2e-07 Score=79.48 Aligned_cols=83 Identities=19% Similarity=0.227 Sum_probs=62.5
Q ss_pred CCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---CC---cccEee
Q 043063 159 KGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---IP---AADAIF 208 (301)
Q Consensus 159 ~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~p---~~D~v~ 208 (301)
.+..+|||||||+| +.+|. |..++.+++ .++|+++.+|+.+. .+ ..|+|+
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 35689999999995 46787 777766653 25899999998653 22 259998
Q ss_pred HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
+.. +......+|+++.+.|+|||+|++.+....
T Consensus 142 ~d~-----~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~ 174 (248)
T 3tfw_A 142 IDA-----DKPNNPHYLRWALRYSRPGTLIIGDNVVRD 174 (248)
T ss_dssp ECS-----CGGGHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred ECC-----chHHHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence 743 344456899999999999999988776554
No 147
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=98.40 E-value=9.1e-08 Score=86.79 Aligned_cols=87 Identities=16% Similarity=0.209 Sum_probs=65.7
Q ss_pred CCCcceEEeecCCce--------------eeeehhHHHhhCCC-------CCceeEEeCCCCcc-CCc-ccEeeHhhhhc
Q 043063 158 FKGVKRLVDVGGSAG--------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKS-IPA-ADAIFMKWVLT 214 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g--------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh 214 (301)
.....+|||||||+| +++|...+++.+++ .++|+++.+|+.+. +|. .|+|++..+.|
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~~ 140 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMGY 140 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCBT
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChhh
Confidence 445689999999996 46677666555543 36799999999765 554 59999977666
Q ss_pred cCCh-HHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063 215 TWTD-DECKLIMENCYKAIPAGGKLIACEPV 244 (301)
Q Consensus 215 ~~~d-~~~~~iL~~~~~aL~pgg~lli~e~~ 244 (301)
.... .....+|+.+++.|+|||.+++.+..
T Consensus 141 ~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~ 171 (376)
T 3r0q_C 141 FLLRESMFDSVISARDRWLKPTGVMYPSHAR 171 (376)
T ss_dssp TBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred cccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence 5543 33567999999999999999877654
No 148
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=98.39 E-value=2.6e-08 Score=80.79 Aligned_cols=80 Identities=14% Similarity=0.149 Sum_probs=60.9
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccC-Cc-ccEeeHhhhh
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSI-PA-ADAIFMKWVL 213 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~-p~-~D~v~~~~vl 213 (301)
....+|||+|||+| +.+|. +.+++.+++ ..++++ .|..... |. +|+|++..+|
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~L 125 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKML 125 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETCH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhHH
Confidence 35689999999995 45687 777777654 136666 6665543 33 5999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063 214 TTWTDDECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
|.+ ++ ....+.+++++|+|||.++..+
T Consensus 126 HlL-~~-~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 126 PVL-KQ-QDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp HHH-HH-TTCCHHHHHHTCEEEEEEEEEE
T ss_pred Hhh-hh-hHHHHHHHHHHhCCCCEEEEeC
Confidence 999 43 3466669999999999999888
No 149
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=98.39 E-value=1.6e-07 Score=76.86 Aligned_cols=89 Identities=16% Similarity=0.171 Sum_probs=64.8
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc--C-Cc-ccEeeH
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS--I-PA-ADAIFM 209 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~--~-p~-~D~v~~ 209 (301)
.+...+|||+|||+| +++|. +.+++.+++ .++++++.+|+.+. . +. .|+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 445679999999995 46787 777776654 26899999998653 2 23 599998
Q ss_pred hhhhcc-------CChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 210 KWVLTT-------WTDDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 210 ~~vlh~-------~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
...+.. ...+...++++++.+.|+|||++++......
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 143 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGG 143 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBT
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCC
Confidence 765511 1223456799999999999999998876443
No 150
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=98.36 E-value=1.8e-07 Score=77.59 Aligned_cols=84 Identities=20% Similarity=0.289 Sum_probs=63.7
Q ss_pred hhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC-c--c
Q 043063 151 ILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP-A--A 204 (301)
Q Consensus 151 ~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p-~--~ 204 (301)
+++.+. ..+..+|||||||+| +++|. |.+++.+++ .+++++..+|+...++ . .
T Consensus 69 ~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 147 (215)
T 2yxe_A 69 MCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPY 147 (215)
T ss_dssp HHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCE
T ss_pred HHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCe
Confidence 334443 556789999999995 35676 677766653 2579999999876554 2 4
Q ss_pred cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
|+|++..++|++++ ++++.|+|||++++...
T Consensus 148 D~v~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 148 DRIYTTAAGPKIPE--------PLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp EEEEESSBBSSCCH--------HHHHTEEEEEEEEEEES
T ss_pred eEEEECCchHHHHH--------HHHHHcCCCcEEEEEEC
Confidence 99999999998874 67889999999988764
No 151
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=98.35 E-value=5.9e-07 Score=76.50 Aligned_cols=53 Identities=13% Similarity=0.184 Sum_probs=41.7
Q ss_pred EEeCCCCccC------Cc--ccEeeHhhhhccCCh-------HHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063 192 HIGGDMFKSI------PA--ADAIFMKWVLTTWTD-------DECKLIMENCYKAIPAGGKLIACEPV 244 (301)
Q Consensus 192 ~~~gd~~~~~------p~--~D~v~~~~vlh~~~d-------~~~~~iL~~~~~aL~pgg~lli~e~~ 244 (301)
|..+|+++.. +. .|+|++...++...+ +....+++++++.|+|||++++....
T Consensus 149 ~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 149 IRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDRS 216 (250)
T ss_dssp EEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred eeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEeCcc
Confidence 9999998864 33 499999876665443 55679999999999999999985543
No 152
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=98.35 E-value=1.3e-07 Score=79.02 Aligned_cols=84 Identities=20% Similarity=0.430 Sum_probs=63.6
Q ss_pred CcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---CC------cccE
Q 043063 160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---IP------AADA 206 (301)
Q Consensus 160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~p------~~D~ 206 (301)
+..+|||||||+| +.+|. |.+++.+++ .++|+++.+|+.+. .+ ..|+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 4679999999995 46787 777777654 25899999998542 33 2599
Q ss_pred eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
|++....|++.+. .++++.+ +.|+|||+|++.+...+
T Consensus 138 V~~d~~~~~~~~~--~~~~~~~-~~LkpgG~lv~~~~~~~ 174 (221)
T 3u81_A 138 VFLDHWKDRYLPD--TLLLEKC-GLLRKGTVLLADNVIVP 174 (221)
T ss_dssp EEECSCGGGHHHH--HHHHHHT-TCCCTTCEEEESCCCCC
T ss_pred EEEcCCcccchHH--HHHHHhc-cccCCCeEEEEeCCCCc
Confidence 9998877766543 4678877 99999999988877654
No 153
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=98.34 E-value=3.1e-07 Score=83.28 Aligned_cols=83 Identities=12% Similarity=0.134 Sum_probs=66.1
Q ss_pred CcceEEeecCCce-------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CC--cccEeeHhhhhcc--
Q 043063 160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IP--AADAIFMKWVLTT-- 215 (301)
Q Consensus 160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p--~~D~v~~~~vlh~-- 215 (301)
...+|||+|||+| +.+|. +.+++.+++ .-+++++.+|+.+. .+ ..|+|++...+|.
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~ 312 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVGG 312 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTTC
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhcc
Confidence 4579999999996 46787 777777654 12589999999876 33 2599999999887
Q ss_pred -CChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063 216 -WTDDECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 216 -~~d~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
...+....+++++++.|+|||++++..
T Consensus 313 ~~~~~~~~~~l~~~~~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 313 AVILDVAQAFVNVAAARLRPGGVFFLVS 340 (381)
T ss_dssp SSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 345667899999999999999998864
No 154
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=98.33 E-value=1.2e-07 Score=81.09 Aligned_cols=80 Identities=20% Similarity=0.232 Sum_probs=59.7
Q ss_pred CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC-----c-ccEeeH
Q 043063 158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP-----A-ADAIFM 209 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p-----~-~D~v~~ 209 (301)
.....+|||||||+| +.+|. +..++.+++ ..+|+++.+|+.+..+ . .|+|++
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence 446789999999996 46786 666666553 2569999999865321 2 599998
Q ss_pred hhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 210 KWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 210 ~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
..+ .+ ...+++.+.+.|+|||++++...
T Consensus 158 ~a~----~~--~~~ll~~~~~~LkpgG~l~~~~g 185 (249)
T 3g89_A 158 RAV----AP--LCVLSELLLPFLEVGGAAVAMKG 185 (249)
T ss_dssp ESS----CC--HHHHHHHHGGGEEEEEEEEEEEC
T ss_pred CCc----CC--HHHHHHHHHHHcCCCeEEEEEeC
Confidence 653 33 35899999999999999998664
No 155
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=98.33 E-value=1.2e-07 Score=79.41 Aligned_cols=82 Identities=12% Similarity=0.217 Sum_probs=58.4
Q ss_pred CcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc----CCc--ccEeeHhh
Q 043063 160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS----IPA--ADAIFMKW 211 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~----~p~--~D~v~~~~ 211 (301)
...+|||||||+| +++|. +.+++.+++ ..+|+++.+|+.+. ++. .|.|++..
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 4578999999996 56787 777766543 36799999998653 444 38887764
Q ss_pred hhccCChHHH-------HHHHHHHHHhCCCCCEEEEec
Q 043063 212 VLTTWTDDEC-------KLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 212 vlh~~~d~~~-------~~iL~~~~~aL~pgg~lli~e 242 (301)
... |+.... ..+++.+++.|+|||++++..
T Consensus 114 ~~p-~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 114 PDP-WHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp CCC-CCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCC-ccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 332 332211 259999999999999988764
No 156
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=98.32 E-value=1.8e-07 Score=83.96 Aligned_cols=81 Identities=21% Similarity=0.296 Sum_probs=61.1
Q ss_pred CcceEEeecCCce--------------eeeehhHHHhhCCC-------CCceeEEeCCCCcc-CCc--ccEeeHhhhhcc
Q 043063 160 GVKRLVDVGGSAG--------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTT 215 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~ 215 (301)
...+|||||||+| +++|..++++.|++ .++|+++.+|+.+. +|. .|+|++..+.|.
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~ 145 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC 145 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred CCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccccc
Confidence 4579999999996 46787656666543 36799999999875 663 599998766544
Q ss_pred C-ChHHHHHHHHHHHHhCCCCCEEEE
Q 043063 216 W-TDDECKLIMENCYKAIPAGGKLIA 240 (301)
Q Consensus 216 ~-~d~~~~~iL~~~~~aL~pgg~lli 240 (301)
+ .......+|+.+.+.|+|||+++.
T Consensus 146 l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 146 LFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 3 223356899999999999999873
No 157
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=98.32 E-value=4.6e-07 Score=78.65 Aligned_cols=106 Identities=15% Similarity=0.093 Sum_probs=76.8
Q ss_pred CCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc--ccEeeHhhhhc
Q 043063 159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA--ADAIFMKWVLT 214 (301)
Q Consensus 159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~--~D~v~~~~vlh 214 (301)
++..+|||+|||+| +.+|. |.+++.+++ .++++++.+|+++..+. .|+|++..
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~--- 200 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGY--- 200 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECC---
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECC---
Confidence 45689999999995 46787 777776653 25799999999876433 59998742
Q ss_pred cCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceE
Q 043063 215 TWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLR 294 (301)
Q Consensus 215 ~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~ 294 (301)
+. ....+++++.+.|+|||++++.+....... .....+++.+.++++||+...
T Consensus 201 --p~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~------------------------~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 201 --VV-RTHEFIPKALSIAKDGAIIHYHNTVPEKLM------------------------PREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp --CS-SGGGGHHHHHHHEEEEEEEEEEEEEEGGGT------------------------TTTTHHHHHHHHHHTTCEEEE
T ss_pred --ch-hHHHHHHHHHHHCCCCeEEEEEEeeccccc------------------------cccHHHHHHHHHHHcCCeeEE
Confidence 22 235789999999999999999887532110 011467788889999988766
No 158
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=98.32 E-value=2.6e-07 Score=82.63 Aligned_cols=82 Identities=22% Similarity=0.333 Sum_probs=60.5
Q ss_pred CCCcceEEeecCCce--------------eeeehhHHHhhCCC-------CCceeEEeCCCCcc-CC-c-ccEeeHhhhh
Q 043063 158 FKGVKRLVDVGGSAG--------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKS-IP-A-ADAIFMKWVL 213 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g--------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~-~p-~-~D~v~~~~vl 213 (301)
..+..+|||||||+| +++|..++++.+++ .++|+++.+|+.+. +| . .|+|++..+.
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 141 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG 141 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCch
Confidence 445679999999995 46687556666553 27899999999874 66 3 5999976633
Q ss_pred ccC-ChHHHHHHHHHHHHhCCCCCEEE
Q 043063 214 TTW-TDDECKLIMENCYKAIPAGGKLI 239 (301)
Q Consensus 214 h~~-~d~~~~~iL~~~~~aL~pgg~ll 239 (301)
+.+ .......+|+++++.|+|||+++
T Consensus 142 ~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 142 YFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 222 22335689999999999999987
No 159
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=98.31 E-value=5.7e-07 Score=71.56 Aligned_cols=84 Identities=23% Similarity=0.346 Sum_probs=62.3
Q ss_pred CCCcceEEeecCCce----------------eeeehhHHHhhCCCCCceeEEeCCCCcc---------CCc--ccEeeHh
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDLPEVVAEAPSIPGVTHIGGDMFKS---------IPA--ADAIFMK 210 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~---------~p~--~D~v~~~ 210 (301)
.....+|||+|||+| +++|...++ ...++++..+|+.+. ++. .|+|++.
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~ 95 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD----PIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSD 95 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC----CCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcccc----ccCcEEEEEcccccchhhhhhhccCCCCceeEEEEC
Confidence 445679999999996 344553322 237899999999764 443 4999999
Q ss_pred hhhccCChHH---------HHHHHHHHHHhCCCCCEEEEecccc
Q 043063 211 WVLTTWTDDE---------CKLIMENCYKAIPAGGKLIACEPVL 245 (301)
Q Consensus 211 ~vlh~~~d~~---------~~~iL~~~~~aL~pgg~lli~e~~~ 245 (301)
..+|..++.. ...+|+++.+.|+|||++++.....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 96 MAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred CCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 8888765531 1588999999999999999877643
No 160
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=98.30 E-value=4.2e-07 Score=76.55 Aligned_cols=116 Identities=14% Similarity=0.158 Sum_probs=74.9
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hH----HHhhCCCCCceeEEeCCCCcc--CC---c-ccEeeHh
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PE----VVAEAPSIPGVTHIGGDMFKS--IP---A-ADAIFMK 210 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~----v~~~a~~~~ri~~~~gd~~~~--~p---~-~D~v~~~ 210 (301)
+.+..+|||||||+| +++|. |. +++.++...+++++.+|+.+. +| . .|+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 566789999999995 35676 44 344444458899999999873 22 2 4999974
Q ss_pred hhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCC
Q 043063 211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF 290 (301)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf 290 (301)
.. ..+....+++++++.|+|||++++.-......... ..... ...+ .++|+++||
T Consensus 155 ~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~----------~~~~~----------~~~~-~~~l~~~Gf 209 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTA----------SAEAV----------FASE-VKKMQQENM 209 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSS----------CHHHH----------HHHH-HHTTGGGTE
T ss_pred CC----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCC----------CHHHH----------HHHH-HHHHHHCCC
Confidence 32 33344677999999999999998832110000000 00000 1123 588899999
Q ss_pred CceEEEEc
Q 043063 291 PHLRLYRV 298 (301)
Q Consensus 291 ~~~~~~~~ 298 (301)
+++++.++
T Consensus 210 ~~~~~~~~ 217 (233)
T 2ipx_A 210 KPQEQLTL 217 (233)
T ss_dssp EEEEEEEC
T ss_pred ceEEEEec
Confidence 99987765
No 161
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=98.30 E-value=2.1e-06 Score=72.08 Aligned_cols=103 Identities=15% Similarity=0.066 Sum_probs=76.5
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccC-Cc--ccEeeHhhh
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSI-PA--ADAIFMKWV 212 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~-p~--~D~v~~~~v 212 (301)
++..+|+|||||+| +..|. |..++.|++ .+||++..+|.++.+ |. .|+|++..+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 45689999999995 45687 777776654 368999999999874 32 599887654
Q ss_pred hccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCc
Q 043063 213 LTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPH 292 (301)
Q Consensus 213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~ 292 (301)
.-+-..+||....+.|+++|+|++.-. . ...++++||.+.||.+
T Consensus 100 ----Gg~lI~~IL~~~~~~l~~~~~lIlqp~-~-------------------------------~~~~lr~~L~~~Gf~i 143 (230)
T 3lec_A 100 ----GGRLIADILNNDIDKLQHVKTLVLQPN-N-------------------------------REDDLRKWLAANDFEI 143 (230)
T ss_dssp ----CHHHHHHHHHHTGGGGTTCCEEEEEES-S-------------------------------CHHHHHHHHHHTTEEE
T ss_pred ----chHHHHHHHHHHHHHhCcCCEEEEECC-C-------------------------------ChHHHHHHHHHCCCEE
Confidence 334567899999999999998776542 0 2456778888888887
Q ss_pred eEEEE
Q 043063 293 LRLYR 297 (301)
Q Consensus 293 ~~~~~ 297 (301)
.+..-
T Consensus 144 ~~E~l 148 (230)
T 3lec_A 144 VAEDI 148 (230)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77653
No 162
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=98.28 E-value=5.5e-07 Score=75.18 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=61.7
Q ss_pred CCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC--------cccE
Q 043063 159 KGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP--------AADA 206 (301)
Q Consensus 159 ~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p--------~~D~ 206 (301)
.+..+|||||||+| +.+|. |.+++.+++ .++|+++.+|+.+.++ ..|+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 35679999999995 46787 777766543 3579999999875422 2599
Q ss_pred eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
|++... ......+++++.+.|+|||.+++.+...+
T Consensus 137 v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 137 IFIDAD-----KQNNPAYFEWALKLSRPGTVIIGDNVVRE 171 (223)
T ss_dssp EEECSC-----GGGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred EEEcCC-----cHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 986543 33456899999999999998888776554
No 163
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=98.28 E-value=3.1e-07 Score=77.46 Aligned_cols=83 Identities=18% Similarity=0.281 Sum_probs=62.8
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC----c-ccEeeHh
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP----A-ADAIFMK 210 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p----~-~D~v~~~ 210 (301)
.+..+|||||||+| +.+|. |.+++.+++ .++|+++.+|+.+..| . .|+|++.
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 35679999999996 46787 777776654 2589999999987544 2 4999854
Q ss_pred hhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
. +......+++++.+.|+|||+|++.+....
T Consensus 150 ~-----~~~~~~~~l~~~~~~LkpgG~lv~d~~~~~ 180 (232)
T 3ntv_A 150 A-----AKAQSKKFFEIYTPLLKHQGLVITDNVLYH 180 (232)
T ss_dssp T-----TSSSHHHHHHHHGGGEEEEEEEEEECTTGG
T ss_pred C-----cHHHHHHHHHHHHHhcCCCeEEEEeeCCcC
Confidence 3 233356899999999999999988665543
No 164
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=98.28 E-value=3.6e-07 Score=77.10 Aligned_cols=86 Identities=26% Similarity=0.320 Sum_probs=64.9
Q ss_pred HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc---c
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA---A 204 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~---~ 204 (301)
..+++.++ ..+..+|||||||+| +++|. |.+++.+++ .+++++..+|+..+++. .
T Consensus 81 ~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 159 (235)
T 1jg1_A 81 AIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPY 159 (235)
T ss_dssp HHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCCCc
Confidence 44455554 667789999999995 46786 777776653 24699999998555553 4
Q ss_pred cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
|+|++..++|++++ ++.+.|+|||++++.-.
T Consensus 160 D~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 160 DVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp EEEEECSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred cEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEe
Confidence 99999999998875 56789999999988654
No 165
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=98.28 E-value=6.3e-07 Score=74.55 Aligned_cols=82 Identities=15% Similarity=0.279 Sum_probs=57.8
Q ss_pred CcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CCc--ccEeeHhhh
Q 043063 160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IPA--ADAIFMKWV 212 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p~--~D~v~~~~v 212 (301)
...+|||||||+| +++|. +.+++.+++ .++|+++.+|+.+. ++. .|.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 3568999999996 56787 777766543 36899999998752 443 387765432
Q ss_pred hccCChHH-------HHHHHHHHHHhCCCCCEEEEec
Q 043063 213 LTTWTDDE-------CKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 213 lh~~~d~~-------~~~iL~~~~~aL~pgg~lli~e 242 (301)
. .|+... ...+|+++++.|+|||+|++..
T Consensus 118 ~-p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 118 D-PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp C-CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred C-CCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 2 122110 2578999999999999998764
No 166
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=98.27 E-value=3.4e-07 Score=80.15 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=57.1
Q ss_pred CcceEEeecCCce---------------eeeeh-hHHHhhCCC-----------CCceeEEeCCCCccCC---c-ccEee
Q 043063 160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-----------IPGVTHIGGDMFKSIP---A-ADAIF 208 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-----------~~ri~~~~gd~~~~~p---~-~D~v~ 208 (301)
+..+|||||||+| +++|+ |.+++.+++ .+|++++.+|.++.++ . .|+|+
T Consensus 83 ~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvIi 162 (294)
T 3adn_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVII 162 (294)
T ss_dssp TCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEEE
T ss_pred CCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEEE
Confidence 5689999999996 46787 777776543 3599999999887532 2 59999
Q ss_pred HhhhhccCChHHH--HHHHHHHHHhCCCCCEEEEec
Q 043063 209 MKWVLTTWTDDEC--KLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 209 ~~~vlh~~~d~~~--~~iL~~~~~aL~pgg~lli~e 242 (301)
+...-+.-++... ..+++.++++|+|||++++.-
T Consensus 163 ~D~~~p~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 198 (294)
T 3adn_A 163 SDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp ECC----------CCHHHHHHHHHTEEEEEEEEEEE
T ss_pred ECCCCccCcchhccHHHHHHHHHHhcCCCCEEEEec
Confidence 8544433233222 579999999999999988865
No 167
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=98.27 E-value=9.6e-07 Score=73.30 Aligned_cols=82 Identities=18% Similarity=0.358 Sum_probs=59.6
Q ss_pred CcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CCc--ccEeeHhhh
Q 043063 160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IPA--ADAIFMKWV 212 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p~--~D~v~~~~v 212 (301)
...+|||||||+| +++|. +.+++.+++ .++++++.+|+.+. ++. .|+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 3568999999996 56787 777776653 26899999999762 333 499987754
Q ss_pred hccCChH-------HHHHHHHHHHHhCCCCCEEEEec
Q 043063 213 LTTWTDD-------ECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 213 lh~~~d~-------~~~~iL~~~~~aL~pgg~lli~e 242 (301)
.+ |... ....+|+++++.|+|||++++..
T Consensus 121 ~~-~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 121 DP-WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp CC-CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CC-ccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 32 2211 12479999999999999988753
No 168
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=98.26 E-value=6.2e-07 Score=73.37 Aligned_cols=90 Identities=24% Similarity=0.392 Sum_probs=60.8
Q ss_pred HhhhcCCCCCCcceEEeecCCce-------------eeeehhHHHhhCCCCCceeEEeCCCCccC--------------C
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDLPEVVAEAPSIPGVTHIGGDMFKSI--------------P 202 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~~--------------p 202 (301)
++.+.+..+++..+|||+|||+| +.+|+.+. ....+++++.+|+.+.. .
T Consensus 15 ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 90 (191)
T 3dou_A 15 FLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALREEGIE 90 (191)
T ss_dssp HHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHHHHTCS
T ss_pred HHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhhcccCC
Confidence 34444433566789999999997 46787432 22468999999998641 2
Q ss_pred cccEeeHhhhhc---------cCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 203 AADAIFMKWVLT---------TWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 203 ~~D~v~~~~vlh---------~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
..|+|++..... ...-+.+..+|+.+.+.|+|||++++...
T Consensus 91 ~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 91 KVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp SEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 359988743211 11112245789999999999999987665
No 169
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=98.25 E-value=1.4e-07 Score=77.86 Aligned_cols=82 Identities=9% Similarity=0.050 Sum_probs=60.9
Q ss_pred cceEEeecCCce--------------eeeeh-hHHHhhCCC------C--CceeEEeCCCCccC-----Cc-ccEeeHhh
Q 043063 161 VKRLVDVGGSAG--------------INFDL-PEVVAEAPS------I--PGVTHIGGDMFKSI-----PA-ADAIFMKW 211 (301)
Q Consensus 161 ~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~------~--~ri~~~~gd~~~~~-----p~-~D~v~~~~ 211 (301)
..+|||+|||+| +.+|. |.+++.+++ . ++++++.+|+.+.. .. .|+|++..
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 133 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 133 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred CCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECC
Confidence 468999999996 46787 777777654 2 58999999987532 24 69999887
Q ss_pred hhccCChHHHHHHHHHH--HHhCCCCCEEEEecccc
Q 043063 212 VLTTWTDDECKLIMENC--YKAIPAGGKLIACEPVL 245 (301)
Q Consensus 212 vlh~~~d~~~~~iL~~~--~~aL~pgg~lli~e~~~ 245 (301)
.+| .. ....+++.+ .+.|+|||++++.....
T Consensus 134 ~~~-~~--~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 134 PFH-FN--LAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CSS-SC--HHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCC-Cc--cHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 755 33 345788888 55799999988876543
No 170
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=98.24 E-value=6.3e-07 Score=79.27 Aligned_cols=84 Identities=20% Similarity=0.412 Sum_probs=63.2
Q ss_pred hhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC-c--c
Q 043063 151 ILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP-A--A 204 (301)
Q Consensus 151 ~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p-~--~ 204 (301)
+++.++ ..+..+|||||||+| +++|+ +.+++.+++ .++++++.+|+.+..+ . .
T Consensus 67 l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~f 145 (317)
T 1dl5_A 67 FMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPY 145 (317)
T ss_dssp HHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCe
Confidence 344443 566789999999995 35676 677766653 2569999999987533 2 4
Q ss_pred cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
|+|++..++|+++ +++++.|+|||++++...
T Consensus 146 D~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 146 DVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp EEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBC
T ss_pred EEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEEC
Confidence 9999999999887 356779999999998754
No 171
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=98.22 E-value=8e-07 Score=75.20 Aligned_cols=83 Identities=10% Similarity=0.223 Sum_probs=55.6
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCC------------CCCceeEEeCCCCcc----CCc--c
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAP------------SIPGVTHIGGDMFKS----IPA--A 204 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~------------~~~ri~~~~gd~~~~----~p~--~ 204 (301)
....+|||||||+| +++|. +.+++.|+ ...+|+++.+|+.+. ++. .
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 34578999999996 57787 66665432 246899999999763 344 3
Q ss_pred cEeeHhhhhccCChH-H------HHHHHHHHHHhCCCCCEEEEec
Q 043063 205 DAIFMKWVLTTWTDD-E------CKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 205 D~v~~~~vlh~~~d~-~------~~~iL~~~~~aL~pgg~lli~e 242 (301)
|.|++...- .|... . ...+|+++++.|+|||+|++..
T Consensus 125 D~v~~~~~d-p~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 125 TKMFFLFPD-PHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp EEEEEESCC------------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEeCCC-chhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 887753221 11110 0 1379999999999999998764
No 172
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=98.21 E-value=5.1e-07 Score=76.81 Aligned_cols=78 Identities=14% Similarity=0.357 Sum_probs=55.2
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCC--------------CCCceeEEeCCCCccCC----c-
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAP--------------SIPGVTHIGGDMFKSIP----A- 203 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~--------------~~~ri~~~~gd~~~~~p----~- 203 (301)
+...+|||||||+| +++|. +.+++.++ ..++++++.+|+++.++ .
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 45679999999996 56786 66665442 23689999999986433 2
Q ss_pred -ccEeeHhhhhccCChHHH-----------HHHHHHHHHhCCCCCEEEEe
Q 043063 204 -ADAIFMKWVLTTWTDDEC-----------KLIMENCYKAIPAGGKLIAC 241 (301)
Q Consensus 204 -~D~v~~~~vlh~~~d~~~-----------~~iL~~~~~aL~pgg~lli~ 241 (301)
.|.|++ +++|... ..+|+++.+.|+|||+|++.
T Consensus 128 ~~d~v~~-----~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~ 172 (246)
T 2vdv_E 128 QLSKMFF-----CFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI 172 (246)
T ss_dssp CEEEEEE-----ESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCEEEE-----ECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence 265552 3344321 37999999999999999885
No 173
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=98.20 E-value=3.1e-07 Score=81.69 Aligned_cols=81 Identities=20% Similarity=0.346 Sum_probs=60.0
Q ss_pred CcceEEeecCCce--------------eeeehhHHHhhCCC-------CCceeEEeCCCCcc-CC-c-ccEeeHhhhhcc
Q 043063 160 GVKRLVDVGGSAG--------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKS-IP-A-ADAIFMKWVLTT 215 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~-~p-~-~D~v~~~~vlh~ 215 (301)
+..+|||||||+| +++|..++++.+++ .++|+++.+|+.+. +| . .|+|++..+.|.
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~ 117 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYF 117 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTT
T ss_pred CCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchhh
Confidence 4579999999996 45677556665543 36899999999875 56 3 599998765444
Q ss_pred CC-hHHHHHHHHHHHHhCCCCCEEEE
Q 043063 216 WT-DDECKLIMENCYKAIPAGGKLIA 240 (301)
Q Consensus 216 ~~-d~~~~~iL~~~~~aL~pgg~lli 240 (301)
+. ......+|+.+.+.|+|||+++.
T Consensus 118 l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 118 LLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp BSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 32 23345899999999999999874
No 174
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=98.20 E-value=1.8e-06 Score=73.03 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=58.0
Q ss_pred cceEEeecCCce-------------------eeeeh-hHHHhhCCC-CCceeEEeCCCCcc--C---Cc--ccEeeHhhh
Q 043063 161 VKRLVDVGGSAG-------------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKS--I---PA--ADAIFMKWV 212 (301)
Q Consensus 161 ~~~vlDvGgG~g-------------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~--~---p~--~D~v~~~~v 212 (301)
..+|||||||+| +.+|. |.+++.++. .++|+++.+|..+. + +. .|+|++...
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~ 161 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA 161 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc
Confidence 469999999995 23465 666665543 36899999999873 2 22 499887554
Q ss_pred hccCChHHHHHHHHHHHH-hCCCCCEEEEecc
Q 043063 213 LTTWTDDECKLIMENCYK-AIPAGGKLIACEP 243 (301)
Q Consensus 213 lh~~~d~~~~~iL~~~~~-aL~pgg~lli~e~ 243 (301)
|. +...+|+++++ .|+|||+|++.+.
T Consensus 162 -~~----~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 162 -HA----NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp -CS----SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred -hH----hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 42 34689999997 9999999999876
No 175
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=98.19 E-value=3.2e-07 Score=74.13 Aligned_cols=85 Identities=7% Similarity=-0.051 Sum_probs=61.5
Q ss_pred CCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccC------Cc-ccEeeH
Q 043063 159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSI------PA-ADAIFM 209 (301)
Q Consensus 159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~------p~-~D~v~~ 209 (301)
....+|||+|||+| +++|. |.+++.+++ .++++++.+|+.+.. +. .|+|++
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 122 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 122 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence 35679999999996 56787 777777654 258999999987642 23 499999
Q ss_pred hhhhccCChHHHHHHHHHH--HHhCCCCCEEEEeccccC
Q 043063 210 KWVLTTWTDDECKLIMENC--YKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 210 ~~vlh~~~d~~~~~iL~~~--~~aL~pgg~lli~e~~~~ 246 (301)
...+|....+ .+++.+ .+.|+|||++++......
T Consensus 123 ~~~~~~~~~~---~~~~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 123 DPPYAKQEIV---SQLEKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp CCCGGGCCHH---HHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred CCCCCchhHH---HHHHHHHHhcccCCCCEEEEEeCCcc
Confidence 8776643333 455555 778999999988765443
No 176
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=98.19 E-value=6.1e-07 Score=73.87 Aligned_cols=77 Identities=14% Similarity=0.196 Sum_probs=58.2
Q ss_pred cceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc--ccEeeHhhhhccC
Q 043063 161 VKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA--ADAIFMKWVLTTW 216 (301)
Q Consensus 161 ~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~--~D~v~~~~vlh~~ 216 (301)
..+|||||||+| +++|. |.+++.+++ ..++++..+|+.+..+. .|+|++.. +
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~----~ 141 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRA----F 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSC----S
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEec----c
Confidence 579999999996 46787 677666543 24599999999875432 59999753 2
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 217 TDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 217 ~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
.+ ...+++++++.|+|||++++...
T Consensus 142 ~~--~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 142 AS--LNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp SS--HHHHHHHHTTSEEEEEEEEEEES
T ss_pred CC--HHHHHHHHHHhcCCCcEEEEEeC
Confidence 33 35899999999999999998743
No 177
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=98.19 E-value=3.5e-07 Score=72.73 Aligned_cols=82 Identities=17% Similarity=0.151 Sum_probs=59.1
Q ss_pred CcceEEeecCCce-------------eeeeh-hHHHhhCCCC----C-ceeEEeCCCCccCC-------cccEeeHhhhh
Q 043063 160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI----P-GVTHIGGDMFKSIP-------AADAIFMKWVL 213 (301)
Q Consensus 160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~----~-ri~~~~gd~~~~~p-------~~D~v~~~~vl 213 (301)
...+|||+|||+| +++|. |.+++.+++. . +++++.+|+.+..+ ..|+|++...+
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~ 120 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPY 120 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCT
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCC
Confidence 4578999999996 56787 7777776541 1 89999999876422 35999998877
Q ss_pred ccCChHHHHHHHHHHH--HhCCCCCEEEEecccc
Q 043063 214 TTWTDDECKLIMENCY--KAIPAGGKLIACEPVL 245 (301)
Q Consensus 214 h~~~d~~~~~iL~~~~--~aL~pgg~lli~e~~~ 245 (301)
| -..+ .+++.+. +.|+|||++++.....
T Consensus 121 ~-~~~~---~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 121 A-MDLA---ALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp T-SCTT---HHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred c-hhHH---HHHHHHHhhcccCCCcEEEEEeCCc
Confidence 6 2222 4445554 9999999988866543
No 178
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=98.19 E-value=2.1e-06 Score=72.62 Aligned_cols=87 Identities=20% Similarity=0.228 Sum_probs=65.1
Q ss_pred HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccC-Cc--cc
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSI-PA--AD 205 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~-p~--~D 205 (301)
.++...+ .....+|||+|||+| +++|. +..++.+++ .+++++..+|+.+.. +. .|
T Consensus 82 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 160 (248)
T 2yvl_A 82 YIALKLN-LNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFH 160 (248)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBS
T ss_pred HHHHhcC-CCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCccc
Confidence 3444553 666789999999996 46786 677666553 268999999998765 54 59
Q ss_pred EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063 206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV 244 (301)
Q Consensus 206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~ 244 (301)
+|++ +.++. ..+|+++.+.|+|||++++....
T Consensus 161 ~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 161 AAFV-----DVREP--WHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp EEEE-----CSSCG--GGGHHHHHHHBCTTCEEEEEESS
T ss_pred EEEE-----CCcCH--HHHHHHHHHHcCCCCEEEEEeCC
Confidence 9986 33443 37899999999999999998764
No 179
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=98.18 E-value=6.2e-07 Score=80.99 Aligned_cols=80 Identities=13% Similarity=0.153 Sum_probs=60.6
Q ss_pred CcceEEeecCC------ce----------------eeeeh-hHHHhhCCCCCceeEEeCCCCcc-CC-------c-ccEe
Q 043063 160 GVKRLVDVGGS------AG----------------INFDL-PEVVAEAPSIPGVTHIGGDMFKS-IP-------A-ADAI 207 (301)
Q Consensus 160 ~~~~vlDvGgG------~g----------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~-~p-------~-~D~v 207 (301)
+..+||||||| +| +++|+ |.+. ...++|+|+.+|+.+. ++ . .|+|
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlV 292 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---VDELRIRTIQGDQNDAEFLDRIARRYGPFDIV 292 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---GCBTTEEEEECCTTCHHHHHHHHHHHCCEEEE
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---hcCCCcEEEEecccccchhhhhhcccCCccEE
Confidence 45799999999 42 56787 5543 2357999999999864 33 2 4999
Q ss_pred eHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063 208 FMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVL 245 (301)
Q Consensus 208 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~ 245 (301)
++. ..|++++ ..+.|+++++.|+|||++++.|...
T Consensus 293 isd-gsH~~~d--~~~aL~el~rvLKPGGvlVi~Dl~t 327 (419)
T 3sso_A 293 IDD-GSHINAH--VRTSFAALFPHVRPGGLYVIEDMWT 327 (419)
T ss_dssp EEC-SCCCHHH--HHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred EEC-Ccccchh--HHHHHHHHHHhcCCCeEEEEEeccc
Confidence 875 4566544 4689999999999999999988763
No 180
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=98.18 E-value=1.1e-06 Score=75.48 Aligned_cols=85 Identities=16% Similarity=0.216 Sum_probs=59.0
Q ss_pred CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCcc--------CCc
Q 043063 158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKS--------IPA 203 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~--------~p~ 203 (301)
.....+|||+|||+| +++|+ |.+++.+++ .+|++++.+|+.+. ++.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 445679999999996 46787 666655432 13799999999865 222
Q ss_pred --ccEeeHhhhhc----------------cCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063 204 --ADAIFMKWVLT----------------TWTDDECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 204 --~D~v~~~~vlh----------------~~~d~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
.|+|++.-.++ +........+++.+.+.|+|||+++++-
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 49999862221 1222235689999999999999988754
No 181
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.18 E-value=5.8e-07 Score=75.07 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=61.3
Q ss_pred CcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccC---------CcccE
Q 043063 160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSI---------PAADA 206 (301)
Q Consensus 160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~---------p~~D~ 206 (301)
+..+|||||||+| +.+|. +.+++.+++ .++|+++.+|+.+.+ ...|+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 4579999999995 45787 677666543 367999999986542 22599
Q ss_pred eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
|++.. +......+++++.+.|+|||+|++.+...+
T Consensus 144 v~~~~-----~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 144 IYIDA-----DKANTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp EEECS-----CGGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred EEECC-----CHHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 98433 334456899999999999999998887654
No 182
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=98.18 E-value=2.6e-07 Score=74.21 Aligned_cols=85 Identities=9% Similarity=0.049 Sum_probs=60.9
Q ss_pred CCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---CCc-ccEeeHhhh
Q 043063 159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---IPA-ADAIFMKWV 212 (301)
Q Consensus 159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~p~-~D~v~~~~v 212 (301)
....+|||+|||+| +++|. +.+++.+++ .++++++.+|+.+. .+. .|+|++...
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~ 109 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 109 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCC
Confidence 35679999999996 56787 777776653 15799999998763 223 599998765
Q ss_pred hccCChHHHHHHHHHHH--HhCCCCCEEEEeccccC
Q 043063 213 LTTWTDDECKLIMENCY--KAIPAGGKLIACEPVLP 246 (301)
Q Consensus 213 lh~~~d~~~~~iL~~~~--~aL~pgg~lli~e~~~~ 246 (301)
+|. .....+++.+. +.|+|||++++......
T Consensus 110 ~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 110 YAK---ETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp SHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred CCc---chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 542 22346666666 89999999988765443
No 183
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=98.18 E-value=5e-07 Score=76.03 Aligned_cols=82 Identities=13% Similarity=0.283 Sum_probs=62.2
Q ss_pred CcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---C--Cc-ccEeeHh
Q 043063 160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---I--PA-ADAIFMK 210 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~--p~-~D~v~~~ 210 (301)
+..+|||||||+| +.+|. |..++.+++ .++|+++.+|+.+. . +. .|+|++.
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 4579999999996 45687 777766653 25899999999864 2 23 5999987
Q ss_pred hhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
...+ ....+|+++.+.|+|||++++.+....
T Consensus 134 ~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~~ 164 (233)
T 2gpy_A 134 AAKG-----QYRRFFDMYSPMVRPGGLILSDNVLFR 164 (233)
T ss_dssp GGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC-
T ss_pred CCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCcC
Confidence 7653 346899999999999999998765443
No 184
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=98.16 E-value=3.2e-06 Score=69.15 Aligned_cols=89 Identities=24% Similarity=0.211 Sum_probs=58.9
Q ss_pred hhhcCCCCCCcceEEeecCCcee-----------------eeehhHHHhhCCCCCceeEEeCCCCccC------------
Q 043063 151 ILDGYDGFKGVKRLVDVGGSAGI-----------------NFDLPEVVAEAPSIPGVTHIGGDMFKSI------------ 201 (301)
Q Consensus 151 ~~~~~~~~~~~~~vlDvGgG~g~-----------------~~Dlp~v~~~a~~~~ri~~~~gd~~~~~------------ 201 (301)
+.+.+..+.+..+|||||||+|. ++|+.++ ...++++++.+|+.+..
T Consensus 13 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----~~~~~v~~~~~d~~~~~~~~~~~~~~i~~ 88 (201)
T 2plw_A 13 LDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM----DPIPNVYFIQGEIGKDNMNNIKNINYIDN 88 (201)
T ss_dssp HHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC----CCCTTCEEEECCTTTTSSCCC--------
T ss_pred HHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc----CCCCCceEEEccccchhhhhhcccccccc
Confidence 33444324566899999999962 2344221 12367999999987642
Q ss_pred --------------Cc--ccEeeHhhhhccCC----hHH-----HHHHHHHHHHhCCCCCEEEEecc
Q 043063 202 --------------PA--ADAIFMKWVLTTWT----DDE-----CKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 202 --------------p~--~D~v~~~~vlh~~~----d~~-----~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
+. .|+|++...+|... |.. ...+|+.+++.|+|||++++...
T Consensus 89 ~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 89 MNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp ---CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 42 49999887776532 211 12489999999999999987443
No 185
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=98.16 E-value=1.7e-06 Score=76.51 Aligned_cols=88 Identities=18% Similarity=0.247 Sum_probs=62.2
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc--CCc-ccEeeHh-
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS--IPA-ADAIFMK- 210 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~--~p~-~D~v~~~- 210 (301)
.....+|||+|||+| +.+|. +..++.+++ ..+++++.+|+.+. .+. .|+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 556789999999995 45687 666666543 25799999998764 232 5999872
Q ss_pred -----hhhcc-------CChHH-------HHHHHHHHHHhCCCCCEEEEecccc
Q 043063 211 -----WVLTT-------WTDDE-------CKLIMENCYKAIPAGGKLIACEPVL 245 (301)
Q Consensus 211 -----~vlh~-------~~d~~-------~~~iL~~~~~aL~pgg~lli~e~~~ 245 (301)
.+++. |+.++ ..++|+++.+.|+|||+|++..+..
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 33433 23222 1589999999999999999877644
No 186
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=98.16 E-value=2.1e-06 Score=75.46 Aligned_cols=84 Identities=14% Similarity=0.148 Sum_probs=56.9
Q ss_pred CCCcceEEeecCCce------------eeeeh-----hHHHhhCC--CC--CceeEEeC-CCCccCC-cccEeeHhhhhc
Q 043063 158 FKGVKRLVDVGGSAG------------INFDL-----PEVVAEAP--SI--PGVTHIGG-DMFKSIP-AADAIFMKWVLT 214 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g------------~~~Dl-----p~v~~~a~--~~--~ri~~~~g-d~~~~~p-~~D~v~~~~vlh 214 (301)
+.+..+|||||||+| +.+|. +..++..+ .. ++|+++.+ |+...-+ ..|+|++...++
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~~~~ 159 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDIGES 159 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECCccc
Confidence 556789999999996 35676 43333222 12 67999999 8875422 359999866543
Q ss_pred ---cCChHH-HHHHHHHHHHhCCCCCEEEEe
Q 043063 215 ---TWTDDE-CKLIMENCYKAIPAGGKLIAC 241 (301)
Q Consensus 215 ---~~~d~~-~~~iL~~~~~aL~pgg~lli~ 241 (301)
...|.. ...+|+.+++.|+|||.+++.
T Consensus 160 ~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 160 SPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred cCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 222322 236899999999999988773
No 187
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=98.15 E-value=1e-06 Score=76.12 Aligned_cols=88 Identities=17% Similarity=0.279 Sum_probs=65.5
Q ss_pred HHhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC---------CCceeEEeCCCCcc-C
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS---------IPGVTHIGGDMFKS-I 201 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~---------~~ri~~~~gd~~~~-~ 201 (301)
..++..++ ..+..+|||+|||+| +.+|. |.+++.+++ .++++++.+|+.+. +
T Consensus 89 ~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~ 167 (280)
T 1i9g_A 89 AQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 167 (280)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence 34555664 677789999999995 45687 776665542 35899999999775 4
Q ss_pred Cc--ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063 202 PA--ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV 244 (301)
Q Consensus 202 p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~ 244 (301)
+. .|+|++ +.++.. .+|+++.++|+|||++++..+.
T Consensus 168 ~~~~~D~v~~-----~~~~~~--~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 168 PDGSVDRAVL-----DMLAPW--EVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp CTTCEEEEEE-----ESSCGG--GGHHHHHHHEEEEEEEEEEESS
T ss_pred CCCceeEEEE-----CCcCHH--HHHHHHHHhCCCCCEEEEEeCC
Confidence 43 499987 344432 7899999999999999998763
No 188
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=98.14 E-value=1.8e-06 Score=74.99 Aligned_cols=81 Identities=12% Similarity=0.167 Sum_probs=58.5
Q ss_pred CCcceEEeecCCce--------------eeeeh--hHHHhhCCC---------C-------CceeEEeCCCCc---cC--
Q 043063 159 KGVKRLVDVGGSAG--------------INFDL--PEVVAEAPS---------I-------PGVTHIGGDMFK---SI-- 201 (301)
Q Consensus 159 ~~~~~vlDvGgG~g--------------~~~Dl--p~v~~~a~~---------~-------~ri~~~~gd~~~---~~-- 201 (301)
....+|||||||+| +.+|. |.+++.+++ . ++|++...|..+ ++
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 34579999999995 46788 566655432 1 378888655433 22
Q ss_pred --C-c-ccEeeHhhhhccCChHHHHHHHHHHHHhCC---C--CCEEEEe
Q 043063 202 --P-A-ADAIFMKWVLTTWTDDECKLIMENCYKAIP---A--GGKLIAC 241 (301)
Q Consensus 202 --p-~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~---p--gg~lli~ 241 (301)
+ . .|+|+++.++|+.++ ...+++.+.+.|+ | ||+++++
T Consensus 158 ~~~~~~fD~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 158 CTGLQRFQVVLLADLLSFHQA--HDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHSCSSBSEEEEESCCSCGGG--HHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred hccCCCCCEEEEeCcccChHH--HHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 2 2 599999999987655 4689999999999 9 9987764
No 189
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=98.14 E-value=1e-06 Score=74.06 Aligned_cols=83 Identities=10% Similarity=0.075 Sum_probs=66.3
Q ss_pred CCcceEEeecCCce------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc-ccEeeHhhhhccCCh
Q 043063 159 KGVKRLVDVGGSAG------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA-ADAIFMKWVLTTWTD 218 (301)
Q Consensus 159 ~~~~~vlDvGgG~g------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~~~d 218 (301)
....+|||||||+| +.+|+ +.+++.+++ ..+.++...|+... .|. +|++++.-++|++.+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~LE~ 183 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPLLER 183 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHHHHH
T ss_pred CCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHHhhh
Confidence 45789999999995 56788 777776654 36788999999876 444 599999999999888
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEec
Q 043063 219 DECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 219 ~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
++-...+ ++.++|++++.++..+
T Consensus 184 q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 184 EQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred hchhhHH-HHHHHhcCCCEEEEcC
Confidence 7655556 8888999998888777
No 190
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=98.14 E-value=6.7e-07 Score=75.99 Aligned_cols=82 Identities=16% Similarity=0.164 Sum_probs=61.0
Q ss_pred CcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---C-----Cc-ccE
Q 043063 160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---I-----PA-ADA 206 (301)
Q Consensus 160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~-----p~-~D~ 206 (301)
+..+|||||||+| +.+|. |.+++.+++ .++|+++.+|..+. . +. .|+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 4579999999996 45676 666655543 36999999998764 2 23 599
Q ss_pred eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
|++... ......+|+++.+.|+|||.|++.+....
T Consensus 140 V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~ 174 (242)
T 3r3h_A 140 IFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWD 174 (242)
T ss_dssp EEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSS
T ss_pred EEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccC
Confidence 987542 33456889999999999999999877654
No 191
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.13 E-value=6.5e-07 Score=78.01 Aligned_cols=89 Identities=21% Similarity=0.327 Sum_probs=59.6
Q ss_pred HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCcccE
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPAADA 206 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~~D~ 206 (301)
..+++.++ ..+..+|||||||+| +++|. +.+++.+++ .++++++.+|+.+. +|..|+
T Consensus 18 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~fD~ 96 (285)
T 1zq9_A 18 NSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDT 96 (285)
T ss_dssp HHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCCSE
T ss_pred HHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchhhcE
Confidence 34445554 666789999999996 56787 777666543 15899999999874 666798
Q ss_pred eeHhhhhccCChHHHHHHHH--------------HH--HHhCCCCCEEE
Q 043063 207 IFMKWVLTTWTDDECKLIME--------------NC--YKAIPAGGKLI 239 (301)
Q Consensus 207 v~~~~vlh~~~d~~~~~iL~--------------~~--~~aL~pgg~ll 239 (301)
|++. ..++|+.+...++|. ++ +.+++|||+++
T Consensus 97 vv~n-lpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 97 CVAN-LPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp EEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred EEEe-cCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 8874 333444444444543 22 35899998653
No 192
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=98.09 E-value=3.8e-06 Score=72.71 Aligned_cols=86 Identities=10% Similarity=0.018 Sum_probs=58.8
Q ss_pred CCCcceEEeecCCce------------eeeehhHHHhhCCC--CC------ceeEE--eCCCCccCCc-ccEeeHhhhhc
Q 043063 158 FKGVKRLVDVGGSAG------------INFDLPEVVAEAPS--IP------GVTHI--GGDMFKSIPA-ADAIFMKWVLT 214 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g------------~~~Dlp~v~~~a~~--~~------ri~~~--~gd~~~~~p~-~D~v~~~~vlh 214 (301)
+.+..+|||||||+| +.+|+.+++..+++ .. +|+++ .+|+.+.-+. .|+|++... +
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~~-~ 158 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQPNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDIG-E 158 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECCC-C
T ss_pred CCCCCEEEEeccCCCHHHHHHHHcCCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECCC-c
Confidence 556789999999996 56788445433322 12 78999 9998753223 599998766 4
Q ss_pred cCChH----H-HHHHHHHHHHhCCCCC--EEEEeccc
Q 043063 215 TWTDD----E-CKLIMENCYKAIPAGG--KLIACEPV 244 (301)
Q Consensus 215 ~~~d~----~-~~~iL~~~~~aL~pgg--~lli~e~~ 244 (301)
..+.. . ..++|+.+.+.|+||| .+++....
T Consensus 159 ~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 159 SNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 33221 1 2248999999999999 88875443
No 193
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=98.09 E-value=3.1e-06 Score=72.83 Aligned_cols=86 Identities=14% Similarity=0.042 Sum_probs=59.1
Q ss_pred CCCcceEEeecCCce------------eeeehhHHHhhCCC--CC------ceeEE--eCCCCccCCc-ccEeeHhhhhc
Q 043063 158 FKGVKRLVDVGGSAG------------INFDLPEVVAEAPS--IP------GVTHI--GGDMFKSIPA-ADAIFMKWVLT 214 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g------------~~~Dlp~v~~~a~~--~~------ri~~~--~gd~~~~~p~-~D~v~~~~vlh 214 (301)
+.+..+|||||||+| +.+|+.+++..+++ .. +|.++ .+|+.+.-+. .|+|++... |
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~~-~ 150 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDVG-E 150 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCC-C
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHcCcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeCc-c
Confidence 556789999999996 56788445433322 12 78999 8998753223 599998766 4
Q ss_pred cCChH----H-HHHHHHHHHHhCCCCC--EEEEeccc
Q 043063 215 TWTDD----E-CKLIMENCYKAIPAGG--KLIACEPV 244 (301)
Q Consensus 215 ~~~d~----~-~~~iL~~~~~aL~pgg--~lli~e~~ 244 (301)
..++. . ...+|+.+++.|+||| .+++....
T Consensus 151 ~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 151 SSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred cCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 33221 1 2248999999999999 88885544
No 194
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.08 E-value=1.2e-06 Score=78.94 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=57.7
Q ss_pred cceEEeecCCce--------------eeeehhHHHhhCCC-------CCceeEEeCCCCcc-CCc-ccEeeHhhhhccCC
Q 043063 161 VKRLVDVGGSAG--------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKS-IPA-ADAIFMKWVLTTWT 217 (301)
Q Consensus 161 ~~~vlDvGgG~g--------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~~~ 217 (301)
..+|||||||+| +.+|..++++.|++ .++|+++.+|+.+. +|. .|+|+.-.+-+.+.
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~l~ 163 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYGLL 163 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTTBT
T ss_pred CCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccccc
Confidence 468999999996 34676555555442 47999999999775 776 69998744433322
Q ss_pred -hHHHHHHHHHHHHhCCCCCEEEE
Q 043063 218 -DDECKLIMENCYKAIPAGGKLIA 240 (301)
Q Consensus 218 -d~~~~~iL~~~~~aL~pgg~lli 240 (301)
......++....+.|+|||+++-
T Consensus 164 ~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 164 HESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp TTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccchhhhHHHHHHhhCCCCceECC
Confidence 23456888888899999998763
No 195
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=98.08 E-value=8.5e-07 Score=74.29 Aligned_cols=81 Identities=15% Similarity=0.240 Sum_probs=59.9
Q ss_pred cceEEeecCCce----------------eeeeh-hHHHhhCCC-------C-CceeEEeCCCCcc---C-Cc-ccEeeHh
Q 043063 161 VKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------I-PGVTHIGGDMFKS---I-PA-ADAIFMK 210 (301)
Q Consensus 161 ~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~-~ri~~~~gd~~~~---~-p~-~D~v~~~ 210 (301)
..+|||||||+| +.+|. |.+++.+++ . +||+++.+|..+. + +. .|+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 349999999995 46787 777766643 2 5899999998764 3 22 4999875
Q ss_pred hhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
. +......+++++.+.|+|||.|++.+....
T Consensus 137 ~-----~~~~~~~~l~~~~~~LkpGG~lv~dn~~~~ 167 (221)
T 3dr5_A 137 V-----SPMDLKALVDAAWPLLRRGGALVLADALLD 167 (221)
T ss_dssp C-----CTTTHHHHHHHHHHHEEEEEEEEETTTTGG
T ss_pred C-----cHHHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence 3 223345789999999999999998776653
No 196
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=98.08 E-value=8.1e-07 Score=73.49 Aligned_cols=82 Identities=21% Similarity=0.206 Sum_probs=60.6
Q ss_pred CcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC--c-ccEeeHhhh
Q 043063 160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP--A-ADAIFMKWV 212 (301)
Q Consensus 160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p--~-~D~v~~~~v 212 (301)
+..+|||||||+| +.+|. +.+++.+++ .++++++.+|..+..| . .|+|++..
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~- 134 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC- 134 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET-
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC-
Confidence 4579999999995 45687 777776653 2589999999875322 2 69888752
Q ss_pred hccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 213 LTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
+......+++++++.|+|||++++.+....
T Consensus 135 ----~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 164 (210)
T 3c3p_A 135 ----DVFNGADVLERMNRCLAKNALLIAVNALRR 164 (210)
T ss_dssp ----TTSCHHHHHHHHGGGEEEEEEEEEESSSSC
T ss_pred ----ChhhhHHHHHHHHHhcCCCeEEEEECcccc
Confidence 223346899999999999999988776543
No 197
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=98.08 E-value=1.3e-06 Score=76.94 Aligned_cols=82 Identities=22% Similarity=0.270 Sum_probs=61.3
Q ss_pred ceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CC-c-ccEeeHhhhhc
Q 043063 162 KRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IP-A-ADAIFMKWVLT 214 (301)
Q Consensus 162 ~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p-~-~D~v~~~~vlh 214 (301)
.+|||||||.| +++|+ |.+++.+++ .+|++++.+|..+. .+ . .|+|++....|
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 49999999996 46787 888887754 36999999998764 33 2 59999865444
Q ss_pred cCChHH--HHHHHHHHHHhCCCCCEEEEecc
Q 043063 215 TWTDDE--CKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 215 ~~~d~~--~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
...... ...+++.++++|+|||.+++.-.
T Consensus 171 ~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 171 AITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp SCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 332222 25899999999999999887764
No 198
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=98.07 E-value=2.1e-06 Score=73.73 Aligned_cols=78 Identities=21% Similarity=0.316 Sum_probs=59.1
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-CCceeEEeCCCCcc-CCc--ccEeeHhhhhccCCh
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTD 218 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d 218 (301)
.+..+|||||||+| +++|. +.+++.+++ ..++.+..+|+... ++. .|+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 35679999999995 46787 777776654 36789999998653 443 4999975442
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063 219 DECKLIMENCYKAIPAGGKLIACEPVL 245 (301)
Q Consensus 219 ~~~~~iL~~~~~aL~pgg~lli~e~~~ 245 (301)
..++++++.|+|||++++..+..
T Consensus 159 ----~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 ----CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp ----CCHHHHHHHEEEEEEEEEEEECT
T ss_pred ----hhHHHHHHhcCCCcEEEEEEcCH
Confidence 35899999999999999987643
No 199
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=98.06 E-value=4.1e-06 Score=72.88 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=58.4
Q ss_pred CcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC-cc---cEeeHh---
Q 043063 160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP-AA---DAIFMK--- 210 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p-~~---D~v~~~--- 210 (301)
...+|||||||+| +.+|. +.+++.+++ .+|++|+.+|+++.++ .. |+|++.
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPPy 202 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPY 202 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCC
T ss_pred CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCCC
Confidence 3468999999996 46787 777776653 2479999999998654 46 999885
Q ss_pred ---------hhhccCCh------HHHHHHHHHHH-HhCCCCCEEEE
Q 043063 211 ---------WVLTTWTD------DECKLIMENCY-KAIPAGGKLIA 240 (301)
Q Consensus 211 ---------~vlh~~~d------~~~~~iL~~~~-~aL~pgg~lli 240 (301)
.+. +.+. .+...+++++. +.|+|||++++
T Consensus 203 i~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 203 VKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp BCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred CCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 222 1221 11237899999 99999999886
No 200
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=98.06 E-value=9.1e-07 Score=74.80 Aligned_cols=82 Identities=21% Similarity=0.285 Sum_probs=60.5
Q ss_pred CcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC-------------
Q 043063 160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP------------- 202 (301)
Q Consensus 160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p------------- 202 (301)
+..+|||||||+| +.+|. |.+++.+++ .++|+++.+|+.+..+
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 139 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS 139 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence 4679999999995 45676 777666553 2579999999865321
Q ss_pred ------c-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 203 ------A-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 203 ------~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
. .|+|++... .+....+++++.+.|+|||++++.+...+
T Consensus 140 ~f~~~~~~fD~I~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 185 (239)
T 2hnk_A 140 DFAFGPSSIDLFFLDAD-----KENYPNYYPLILKLLKPGGLLIADNVLWD 185 (239)
T ss_dssp TTCCSTTCEEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred cccCCCCCcCEEEEeCC-----HHHHHHHHHHHHHHcCCCeEEEEEccccC
Confidence 3 599987643 33456889999999999999998775543
No 201
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=98.04 E-value=1.4e-06 Score=75.80 Aligned_cols=84 Identities=20% Similarity=0.171 Sum_probs=61.2
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCccC---Cc-ccEee
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-ADAIF 208 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~~---p~-~D~v~ 208 (301)
....+|||||||+| +++|+ |.+++.+++ .+|++++.+|..+.. +. .|+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 35689999999995 46787 777776542 368999999987642 33 59999
Q ss_pred HhhhhccCChHHH--HHHHHHHHHhCCCCCEEEEec
Q 043063 209 MKWVLTTWTDDEC--KLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 209 ~~~vlh~~~d~~~--~~iL~~~~~aL~pgg~lli~e 242 (301)
+....+..+.... ..++++++++|+|||++++..
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 8544333233222 589999999999999998874
No 202
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=98.03 E-value=4.7e-08 Score=82.75 Aligned_cols=79 Identities=20% Similarity=0.150 Sum_probs=61.6
Q ss_pred CcceEEeecCCce-------------eeeeh-hHHHhhCCCC-------CceeEEeCCCCccCCc--ccEeeHhhhhccC
Q 043063 160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA--ADAIFMKWVLTTW 216 (301)
Q Consensus 160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~-------~ri~~~~gd~~~~~p~--~D~v~~~~vlh~~ 216 (301)
...+|||+|||+| +++|+ |.+++.+++. ++++++.+|+.+..+. .|+|++...+|+.
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~ 157 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGP 157 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCSSG
T ss_pred CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcCCc
Confidence 4679999999996 56798 7777776541 5899999999765333 5999999999887
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEE
Q 043063 217 TDDECKLIMENCYKAIPAGGKLIA 240 (301)
Q Consensus 217 ~d~~~~~iL~~~~~aL~pgg~lli 240 (301)
++.. ..+.+++++|+|||.+++
T Consensus 158 ~~~~--~~~~~~~~~L~pgG~~i~ 179 (241)
T 3gdh_A 158 DYAT--AETFDIRTMMSPDGFEIF 179 (241)
T ss_dssp GGGG--SSSBCTTTSCSSCHHHHH
T ss_pred chhh--hHHHHHHhhcCCcceeHH
Confidence 7653 367788999999998544
No 203
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=98.02 E-value=2e-06 Score=73.21 Aligned_cols=81 Identities=15% Similarity=0.167 Sum_probs=59.8
Q ss_pred CcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---C------Cc-cc
Q 043063 160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---I------PA-AD 205 (301)
Q Consensus 160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~------p~-~D 205 (301)
+..+|||||||+| +.+|. +.+++.+++ .++|+++.+|..+. + +. .|
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 4579999999996 45677 666666543 26899999998653 2 22 49
Q ss_pred EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063 206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVL 245 (301)
Q Consensus 206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~ 245 (301)
+|++... ......+++++.+.|+|||.|++.+...
T Consensus 159 ~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~ 193 (247)
T 1sui_A 159 FIFVDAD-----KDNYLNYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_dssp EEEECSC-----STTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred EEEEcCc-----hHHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence 9987532 2335689999999999999998876544
No 204
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.01 E-value=9.4e-07 Score=76.58 Aligned_cols=83 Identities=22% Similarity=0.215 Sum_probs=60.2
Q ss_pred CcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCccC---Cc-ccEeeH
Q 043063 160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-ADAIFM 209 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~~---p~-~D~v~~ 209 (301)
+..+|||||||+| +++|+ |.+++.+++ .+|++++.+|.++.+ +. .|+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 4679999999996 46787 777776542 369999999987642 22 599998
Q ss_pred hhhhccCChHH--HHHHHHHHHHhCCCCCEEEEec
Q 043063 210 KWVLTTWTDDE--CKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 210 ~~vlh~~~d~~--~~~iL~~~~~aL~pgg~lli~e 242 (301)
....+..+... ...++++++++|+|||.+++..
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 54433222111 2479999999999999998863
No 205
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=98.00 E-value=1.3e-06 Score=73.03 Aligned_cols=82 Identities=13% Similarity=0.253 Sum_probs=60.9
Q ss_pred CcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---C------CcccE
Q 043063 160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---I------PAADA 206 (301)
Q Consensus 160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~------p~~D~ 206 (301)
+..+|||||||+| +.+|. |.+++.+++ .++++++.+|+.+. + ...|+
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~ 148 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 148 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccE
Confidence 4679999999995 45677 666666543 26899999998653 2 23599
Q ss_pred eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
|++.. +......+++++.+.|+|||.+++.+....
T Consensus 149 v~~d~-----~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 183 (229)
T 2avd_A 149 AVVDA-----DKENCSAYYERCLQLLRPGGILAVLRVLWR 183 (229)
T ss_dssp EEECS-----CSTTHHHHHHHHHHHEEEEEEEEEECCSGG
T ss_pred EEECC-----CHHHHHHHHHHHHHHcCCCeEEEEECCCcC
Confidence 88743 233456899999999999999998776543
No 206
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.00 E-value=2.2e-06 Score=74.41 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=58.2
Q ss_pred CcceEEeecCCce--------------eeeeh-hHHHhhCC----------------CCCceeEEeCCCCccC--Cc-cc
Q 043063 160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAP----------------SIPGVTHIGGDMFKSI--PA-AD 205 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~----------------~~~ri~~~~gd~~~~~--p~-~D 205 (301)
...+|||||||+| +++|+ |.+++.++ ..+|++++.+|..+.+ +. .|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~fD 154 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFD 154 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCCee
Confidence 4579999999996 46687 77766543 2468999999986532 33 59
Q ss_pred EeeHhhhhccCChHH--HHHHHHHHHHhCCCCCEEEEec
Q 043063 206 AIFMKWVLTTWTDDE--CKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 206 ~v~~~~vlh~~~d~~--~~~iL~~~~~aL~pgg~lli~e 242 (301)
+|++....|..+... ...+++++++.|+|||++++..
T Consensus 155 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 155 VIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 999755433222222 2588999999999999998864
No 207
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=97.99 E-value=1.4e-06 Score=71.75 Aligned_cols=82 Identities=6% Similarity=0.025 Sum_probs=59.6
Q ss_pred cceEEeecCCce--------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccC--C-c-ccEeeHhhhhcc
Q 043063 161 VKRLVDVGGSAG--------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSI--P-A-ADAIFMKWVLTT 215 (301)
Q Consensus 161 ~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~--p-~-~D~v~~~~vlh~ 215 (301)
..+|||+|||+| +.+|. |.+++.+++ .++++++.+|+.+.. + . .|+|++...+|
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~- 133 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR- 133 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS-
T ss_pred CCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC-
Confidence 468999999996 46787 777777654 258999999987632 2 2 59999877655
Q ss_pred CChHHHHHHHHHHHHh--CCCCCEEEEecccc
Q 043063 216 WTDDECKLIMENCYKA--IPAGGKLIACEPVL 245 (301)
Q Consensus 216 ~~d~~~~~iL~~~~~a--L~pgg~lli~e~~~ 245 (301)
..+ ...+++.+.+. |+|||++++.....
T Consensus 134 ~~~--~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 134 RGL--LEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp TTT--HHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred CCc--HHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 332 34677777664 99999988766543
No 208
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=97.99 E-value=2.1e-06 Score=75.84 Aligned_cols=83 Identities=18% Similarity=0.169 Sum_probs=61.2
Q ss_pred CcceEEeecCCce---------------eeeeh-hHHHhhCCC-----------CCceeEEeCCCCccC---Cc-ccEee
Q 043063 160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-----------IPGVTHIGGDMFKSI---PA-ADAIF 208 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-----------~~ri~~~~gd~~~~~---p~-~D~v~ 208 (301)
+..+|||||||+| +++|+ |.+++.+++ .+|++++.+|..+.+ +. .|+|+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 4579999999995 46787 777766542 368999999987642 23 59999
Q ss_pred Hhhhhcc---CChHH--HHHHHHHHHHhCCCCCEEEEec
Q 043063 209 MKWVLTT---WTDDE--CKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 209 ~~~vlh~---~~d~~--~~~iL~~~~~aL~pgg~lli~e 242 (301)
+....|. -+... ...++++++++|+|||++++..
T Consensus 157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred ECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 9766544 11111 3589999999999999998874
No 209
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=97.97 E-value=2.4e-06 Score=76.08 Aligned_cols=87 Identities=20% Similarity=0.273 Sum_probs=61.8
Q ss_pred HhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-----------------CCceeEEeC
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-----------------IPGVTHIGG 195 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-----------------~~ri~~~~g 195 (301)
.++..++ .....+|||||||+| +.+|. |..++.+++ .+++++..+
T Consensus 96 ~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~ 174 (336)
T 2b25_A 96 MILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK 174 (336)
T ss_dssp HHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEEC
Confidence 3445554 667789999999995 45687 666666543 258999999
Q ss_pred CCCcc---CCc--ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063 196 DMFKS---IPA--ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV 244 (301)
Q Consensus 196 d~~~~---~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~ 244 (301)
|+.+. ++. .|+|++. .++. ..+++.+++.|+|||++++....
T Consensus 175 d~~~~~~~~~~~~fD~V~~~-----~~~~--~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 175 DISGATEDIKSLTFDAVALD-----MLNP--HVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp CTTCCC-------EEEEEEC-----SSST--TTTHHHHGGGEEEEEEEEEEESS
T ss_pred ChHHcccccCCCCeeEEEEC-----CCCH--HHHHHHHHHhcCCCcEEEEEeCC
Confidence 99874 343 4999873 2332 24899999999999999987763
No 210
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=97.97 E-value=9.3e-06 Score=68.71 Aligned_cols=80 Identities=18% Similarity=0.188 Sum_probs=61.3
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC-c--ccEeeHhhh
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP-A--ADAIFMKWV 212 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p-~--~D~v~~~~v 212 (301)
++..+|+|||||+| +.+|. |..++.|++ .+||++..+|.++.++ . .|+|++..+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 45689999999995 45687 777766654 3689999999998743 2 599887543
Q ss_pred hccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063 213 LTTWTDDECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
.-+-...||....+.|+++++|++.-
T Consensus 100 ----Gg~lI~~IL~~~~~~L~~~~~lIlq~ 125 (244)
T 3gnl_A 100 ----GGTLIRTILEEGAAKLAGVTKLILQP 125 (244)
T ss_dssp ----CHHHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred ----chHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 34456789999999999988888764
No 211
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=97.95 E-value=3.8e-06 Score=68.80 Aligned_cols=73 Identities=19% Similarity=0.375 Sum_probs=52.7
Q ss_pred CCcceEEeecCCce--------------eeeeh-hHHHhhCCCC-CceeEEeCCCCccCCc-ccEeeHhhhhccCChHHH
Q 043063 159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPSI-PGVTHIGGDMFKSIPA-ADAIFMKWVLTTWTDDEC 221 (301)
Q Consensus 159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~-~ri~~~~gd~~~~~p~-~D~v~~~~vlh~~~d~~~ 221 (301)
....+|||+|||+| +++|. |.+++.+++. .+++++.+|+.+ +|. .|+|++...+|.+++...
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~~~~ 128 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVKHSD 128 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC-------C
T ss_pred CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccCchh
Confidence 34579999999996 46787 7777776542 389999999876 454 599999999998877555
Q ss_pred HHHHHHHHHhC
Q 043063 222 KLIMENCYKAI 232 (301)
Q Consensus 222 ~~iL~~~~~aL 232 (301)
.++++++.+.+
T Consensus 129 ~~~l~~~~~~~ 139 (200)
T 1ne2_A 129 RAFIDKAFETS 139 (200)
T ss_dssp HHHHHHHHHHE
T ss_pred HHHHHHHHHhc
Confidence 68899999988
No 212
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=97.95 E-value=1.1e-06 Score=84.04 Aligned_cols=87 Identities=10% Similarity=0.049 Sum_probs=66.6
Q ss_pred CcceEEeecCCce-------------eeeeh-hHHHhhCCC----C--CceeEEeCCCCcc---CC-c-ccEeeHhhhhc
Q 043063 160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----I--PGVTHIGGDMFKS---IP-A-ADAIFMKWVLT 214 (301)
Q Consensus 160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----~--~ri~~~~gd~~~~---~p-~-~D~v~~~~vlh 214 (301)
+..+|||||||.| +++|. +..++.|+. . -.|+|..++..+. .+ . .|+|++..+||
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~e 145 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFH 145 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHH
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchh
Confidence 4579999999996 68898 777776653 2 3699999988642 23 2 59999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 215 TWTDDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 215 ~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
|++|.+...-+.++.+.|+++++.++...+..
T Consensus 146 hv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~ 177 (569)
T 4azs_A 146 HIVHLHGIDEVKRLLSRLADVTQAVILELAVK 177 (569)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHSSEEEEECCCT
T ss_pred cCCCHHHHHHHHHHHHHhccccceeeEEeccc
Confidence 99988766666778888998887777665443
No 213
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=97.94 E-value=1.1e-05 Score=72.44 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=66.5
Q ss_pred hHHhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc
Q 043063 148 MTSILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA 203 (301)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~ 203 (301)
+..++.... +.+..+|||+|||+| +++|. |.+++.|++ .++|+|..+|+.+. .+.
T Consensus 192 a~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 192 AQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred HHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence 344455554 778889999999996 45687 777777654 13899999999864 332
Q ss_pred --ccEeeHhhhhccC-Ch-HH----HHHHHHHHHHhCCCCCEEEEecc
Q 043063 204 --ADAIFMKWVLTTW-TD-DE----CKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 204 --~D~v~~~~vlh~~-~d-~~----~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
.|+|++.--.+.. .+ .+ -..+++.+++.|+|||++++...
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 4999985443321 11 11 25899999999999999998754
No 214
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=97.94 E-value=2.8e-06 Score=75.27 Aligned_cols=83 Identities=19% Similarity=0.161 Sum_probs=59.1
Q ss_pred CcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCccC---Cc-ccEeeH
Q 043063 160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-ADAIFM 209 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~~---p~-~D~v~~ 209 (301)
...+|||||||+| +++|+ |.+++.+++ .+|++++.+|.++.. +. .|+|++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 4579999999996 46787 777766542 368999999987642 23 599997
Q ss_pred hhhhccCChHHH--HHHHHHHHHhCCCCCEEEEec
Q 043063 210 KWVLTTWTDDEC--KLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 210 ~~vlh~~~d~~~--~~iL~~~~~aL~pgg~lli~e 242 (301)
...-+..+.... ..++++++++|+|||++++..
T Consensus 196 d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 196 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp ECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 542221111211 689999999999999998864
No 215
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=97.92 E-value=2.7e-06 Score=75.09 Aligned_cols=83 Identities=20% Similarity=0.222 Sum_probs=56.2
Q ss_pred CcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCccC---Cc-ccEeeH
Q 043063 160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-ADAIFM 209 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~~---p~-~D~v~~ 209 (301)
+..+|||||||+| +++|+ |.+++.|++ .+|++++.+|..+.+ +. .|+|++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 4579999999996 46687 777766542 368999999987642 22 599997
Q ss_pred hhhhccCChHHH--HHHHHHHHHhCCCCCEEEEec
Q 043063 210 KWVLTTWTDDEC--KLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 210 ~~vlh~~~d~~~--~~iL~~~~~aL~pgg~lli~e 242 (301)
...-|.-++... ..++++++++|+|||++++..
T Consensus 188 d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 188 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 543322222221 689999999999999998865
No 216
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=97.92 E-value=2.8e-06 Score=71.85 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=60.0
Q ss_pred CcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---C------Cc-cc
Q 043063 160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---I------PA-AD 205 (301)
Q Consensus 160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~------p~-~D 205 (301)
+..+|||||||+| +.+|. |.+++.+++ .++|+++.+|..+. + +. .|
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 149 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYD 149 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence 4679999999995 45687 777666543 25899999998753 2 23 49
Q ss_pred EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063 206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVL 245 (301)
Q Consensus 206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~ 245 (301)
+|++.. +......+++++.+.|+|||.+++.+...
T Consensus 150 ~I~~d~-----~~~~~~~~l~~~~~~L~pGG~lv~d~~~~ 184 (237)
T 3c3y_A 150 FGFVDA-----DKPNYIKYHERLMKLVKVGGIVAYDNTLW 184 (237)
T ss_dssp EEEECS-----CGGGHHHHHHHHHHHEEEEEEEEEECTTG
T ss_pred EEEECC-----chHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence 998642 33445789999999999999988766544
No 217
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=97.92 E-value=1.7e-06 Score=76.05 Aligned_cols=84 Identities=15% Similarity=0.183 Sum_probs=58.3
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCccC---Cc-ccEee
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-ADAIF 208 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~~---p~-~D~v~ 208 (301)
.+..+|||||||+| +.+|+ |.+++.+++ .+|++++.+|.++.+ +. .|+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 45689999999995 46787 777766543 468999999987532 22 59999
Q ss_pred HhhhhccCChH--HHHHHHHHHHHhCCCCCEEEEec
Q 043063 209 MKWVLTTWTDD--ECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 209 ~~~vlh~~~d~--~~~~iL~~~~~aL~pgg~lli~e 242 (301)
+....|..+.. ....++++++++|+|||++++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 85443322211 12478999999999999998865
No 218
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=97.91 E-value=2.9e-06 Score=75.53 Aligned_cols=83 Identities=20% Similarity=0.232 Sum_probs=59.8
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCcc---CCc--ccEe
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKS---IPA--ADAI 207 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~---~p~--~D~v 207 (301)
....+|||||||+| +.+|+ |.+++.+++ .+|++++.+|.++. .+. .|+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 45689999999996 46787 777776653 36899999998753 332 5999
Q ss_pred eHhhhhccCChHH--HHHHHHHHHHhCCCCCEEEEe
Q 043063 208 FMKWVLTTWTDDE--CKLIMENCYKAIPAGGKLIAC 241 (301)
Q Consensus 208 ~~~~vlh~~~d~~--~~~iL~~~~~aL~pgg~lli~ 241 (301)
++....+..+.+. ...+++.++++|+|||++++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9754321111111 368999999999999999886
No 219
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=97.90 E-value=7e-06 Score=68.49 Aligned_cols=79 Identities=23% Similarity=0.264 Sum_probs=58.9
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-----------CCceeEEeCCCCccCC-c--ccE
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-----------IPGVTHIGGDMFKSIP-A--ADA 206 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-----------~~ri~~~~gd~~~~~p-~--~D~ 206 (301)
..+..+|||||||+| +.+|. +.+++.+++ .++++++.+|+....+ . .|+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 445679999999995 45676 666666542 2489999999875532 2 599
Q ss_pred eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063 207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV 244 (301)
Q Consensus 207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~ 244 (301)
|++...++++. +++++.|+|||++++....
T Consensus 155 i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred EEECCchHHHH--------HHHHHhcCCCcEEEEEEec
Confidence 99888886654 5678899999999987653
No 220
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=97.88 E-value=2.6e-06 Score=71.72 Aligned_cols=82 Identities=21% Similarity=0.299 Sum_probs=60.7
Q ss_pred CcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---C------CcccE
Q 043063 160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---I------PAADA 206 (301)
Q Consensus 160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~------p~~D~ 206 (301)
+..+|||||||+| +.+|. |..++.+++ .++|+++.+|..+. + ...|+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 4579999999995 45677 667666653 25899999997642 2 22599
Q ss_pred eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
|++... ......+++++.+.|+|||+|++.+...+
T Consensus 152 V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 186 (232)
T 3cbg_A 152 IFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVLWH 186 (232)
T ss_dssp EEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred EEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence 986532 33456899999999999999998776654
No 221
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=97.87 E-value=1.3e-05 Score=68.76 Aligned_cols=76 Identities=17% Similarity=0.103 Sum_probs=58.9
Q ss_pred CcceEEeecCCce-------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCccCCcccEeeHhhhhcc
Q 043063 160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKSIPAADAIFMKWVLTT 215 (301)
Q Consensus 160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~~p~~D~v~~~~vlh~ 215 (301)
+..+|||||||+| +.+|+ |.+++.+++ .+|++++.+|..+.....|+|++.
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d----- 146 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL----- 146 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES-----
T ss_pred CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC-----
Confidence 4579999999995 45687 888888765 258999999987644235999875
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063 216 WTDDECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 216 ~~d~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
.+|.. .+++.++++|+|||.+++..
T Consensus 147 ~~dp~--~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 147 QEPDI--HRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp SCCCH--HHHHHHHTTEEEEEEEEEEE
T ss_pred CCChH--HHHHHHHHhcCCCcEEEEEc
Confidence 34443 48999999999999998863
No 222
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=97.86 E-value=3.8e-06 Score=73.54 Aligned_cols=83 Identities=19% Similarity=0.245 Sum_probs=56.8
Q ss_pred CcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCccC---Cc-ccEeeH
Q 043063 160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-ADAIFM 209 (301)
Q Consensus 160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~~---p~-~D~v~~ 209 (301)
...+|||||||+| +++|+ |.+++.+++ .+|++++.+|..+.+ +. .|+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 3579999999996 46787 777766543 368999999986532 22 599996
Q ss_pred hhhhccCChH---HHHHHHHHHHHhCCCCCEEEEec
Q 043063 210 KWVLTTWTDD---ECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 210 ~~vlh~~~d~---~~~~iL~~~~~aL~pgg~lli~e 242 (301)
...-+..... ...++++++++.|+|||++++..
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 4322101110 12589999999999999998863
No 223
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=97.84 E-value=1.2e-05 Score=69.63 Aligned_cols=83 Identities=16% Similarity=0.077 Sum_probs=61.0
Q ss_pred CCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc--ccEeeHhhhh
Q 043063 158 FKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA--ADAIFMKWVL 213 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~--~D~v~~~~vl 213 (301)
+++..+|||+|||+| +.+|+ |..++.+++ .++|+++.+|.++-.+. +|.|++..
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~-- 200 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGY-- 200 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECC--
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECC--
Confidence 456789999999995 45687 776666543 47899999999865443 69887642
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 214 TTWTDDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
|. .+..+|..+.+.|+|||.|.+.+.+..
T Consensus 201 ---p~-~~~~~l~~a~~~lk~gG~ih~~~~~~e 229 (278)
T 3k6r_A 201 ---VV-RTHEFIPKALSIAKDGAIIHYHNTVPE 229 (278)
T ss_dssp ---CS-SGGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred ---CC-cHHHHHHHHHHHcCCCCEEEEEeeecc
Confidence 21 234788889999999999988776543
No 224
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=97.83 E-value=8.7e-06 Score=68.09 Aligned_cols=78 Identities=23% Similarity=0.341 Sum_probs=58.7
Q ss_pred CCCcceEEeecCCce---------------------eeeeh-hHHHhhCCC-----------CCceeEEeCCCCccCCc-
Q 043063 158 FKGVKRLVDVGGSAG---------------------INFDL-PEVVAEAPS-----------IPGVTHIGGDMFKSIPA- 203 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g---------------------~~~Dl-p~v~~~a~~-----------~~ri~~~~gd~~~~~p~- 203 (301)
..+..+|||||||+| +.+|. +.+++.+++ .++++++.+|....++.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 445679999999984 22465 666665543 25899999999876553
Q ss_pred --ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 204 --ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 204 --~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
.|+|++...+|+++ +++.+.|+|||++++.-.
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 49999999998766 567889999999988654
No 225
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=97.78 E-value=4.1e-06 Score=71.13 Aligned_cols=94 Identities=13% Similarity=0.169 Sum_probs=59.0
Q ss_pred HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCCC----CceeEEeCCCCcc-CCc-ccEee
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPA-ADAIF 208 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~----~ri~~~~gd~~~~-~p~-~D~v~ 208 (301)
..+++.++ .....+|||||||+| +++|. +.+++.+++. ++++++.+|+.+. ++. ...++
T Consensus 19 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f~v 97 (245)
T 1yub_A 19 NQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRYKI 97 (245)
T ss_dssp HHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEEEE
T ss_pred HHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCcEE
Confidence 34445553 566789999999996 46787 6777776652 6899999999864 442 22233
Q ss_pred HhhhhccCChHHHH----------HHH----HHHHHhCCCCCEEEEecc
Q 043063 209 MKWVLTTWTDDECK----------LIM----ENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 209 ~~~vlh~~~d~~~~----------~iL----~~~~~aL~pgg~lli~e~ 243 (301)
+++.-++.+..... .++ +.+.+.|+|||++.+...
T Consensus 98 v~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~ 146 (245)
T 1yub_A 98 VGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH 146 (245)
T ss_dssp EEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred EEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence 33322222222222 233 668889999998766554
No 226
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=97.74 E-value=0.00011 Score=66.16 Aligned_cols=107 Identities=12% Similarity=0.122 Sum_probs=65.4
Q ss_pred eEEeCCCCcc-CCcc--cEeeHhhhhccCChH------------------------------------HHHHHHHHHHHh
Q 043063 191 THIGGDMFKS-IPAA--DAIFMKWVLTTWTDD------------------------------------ECKLIMENCYKA 231 (301)
Q Consensus 191 ~~~~gd~~~~-~p~~--D~v~~~~vlh~~~d~------------------------------------~~~~iL~~~~~a 231 (301)
.-++|.|+.. +|.. |+++.+.+||-+++. +-..+|+..++.
T Consensus 135 ~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~e 214 (374)
T 3b5i_A 135 AGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAE 214 (374)
T ss_dssp EEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888876 7863 999999999977621 234579999999
Q ss_pred CCCCCEEEEeccccCCCC-CC-hHHhh-h-hh----hccHHHHhh--------hhccccccCHHHHHHHHH-hCCCCceE
Q 043063 232 IPAGGKLIACEPVLPDDS-NE-SQRTR-A-LL----EGDIFVMTI--------YRAKGKHMTEQEFKQLGF-SAGFPHLR 294 (301)
Q Consensus 232 L~pgg~lli~e~~~~~~~-~~-~~~~~-~-~~----~~d~~m~~~--------~~~~g~~rt~~e~~~~l~-~aGf~~~~ 294 (301)
|+|||++++.-...++.. .. ..... + .. +.|+...++ ...--.-++.+|++++++ +.||++..
T Consensus 215 L~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I~~ 294 (374)
T 3b5i_A 215 VKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDK 294 (374)
T ss_dssp EEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEEEE
T ss_pred hCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEEEE
Confidence 999999888776554321 00 00000 0 00 111100000 000122379999999998 59999877
Q ss_pred EEE
Q 043063 295 LYR 297 (301)
Q Consensus 295 ~~~ 297 (301)
+.-
T Consensus 295 le~ 297 (374)
T 3b5i_A 295 LVV 297 (374)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 227
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=97.73 E-value=3e-05 Score=71.81 Aligned_cols=89 Identities=19% Similarity=0.252 Sum_probs=64.2
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CC-c-ccEeeH
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IP-A-ADAIFM 209 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p-~-~D~v~~ 209 (301)
..+..+|||+|||+| +.+|. +..++.+++ ..+++++.+|+... ++ . .|+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 556689999999995 45676 555555432 25799999998764 33 3 599985
Q ss_pred ------hhhhccCChH-------HH-------HHHHHHHHHhCCCCCEEEEeccccC
Q 043063 210 ------KWVLTTWTDD-------EC-------KLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 210 ------~~vlh~~~d~-------~~-------~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
..+++..++. +. .++|+++.+.|+|||+|++.++...
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 4556554442 11 5789999999999999998887654
No 228
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=97.72 E-value=1.4e-05 Score=66.69 Aligned_cols=78 Identities=23% Similarity=0.270 Sum_probs=57.7
Q ss_pred CCCcceEEeecCCce--------------------eeeeh-hHHHhhCCC-----------CCceeEEeCCCCccC----
Q 043063 158 FKGVKRLVDVGGSAG--------------------INFDL-PEVVAEAPS-----------IPGVTHIGGDMFKSI---- 201 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g--------------------~~~Dl-p~v~~~a~~-----------~~ri~~~~gd~~~~~---- 201 (301)
..+..+|||||||+| +.+|. +.+++.+++ .++++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 445689999999985 13465 666655543 258999999987654
Q ss_pred Cc---ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 202 PA---ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 202 p~---~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
+. .|+|++...+|++ ++++.+.|+|||++++.-.
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEc
Confidence 22 4999999888765 4667889999999888755
No 229
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=97.71 E-value=2.1e-05 Score=75.22 Aligned_cols=112 Identities=19% Similarity=0.173 Sum_probs=74.6
Q ss_pred CchhccccCchHHHHHHHHHhcCCccchHHhhhcCC---CCCCcceEEeecCCceeee-------------------ehh
Q 043063 121 PTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYD---GFKGVKRLVDVGGSAGINF-------------------DLP 178 (301)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~---~~~~~~~vlDvGgG~g~~~-------------------Dlp 178 (301)
..|+.+++++-....|.+|+.. ++.+... .-.+...|+|||||+|++. +-.
T Consensus 322 ~tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEkn 394 (637)
T 4gqb_A 322 QTYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKN 394 (637)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESC
T ss_pred hhhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3578788999888899998852 2222111 1224568999999998432 222
Q ss_pred HHHhhCCC-------CCceeEEeCCCCcc-CCc-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEE
Q 043063 179 EVVAEAPS-------IPGVTHIGGDMFKS-IPA-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLI 239 (301)
Q Consensus 179 ~v~~~a~~-------~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~ll 239 (301)
+++..+++ .++|+++.||+.+- .|+ +|+|+.-.+=...-.+-...+|....+.|+|||.++
T Consensus 395 p~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 395 PNAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp HHHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 22222221 38999999999875 887 699887655444444445677888888999998754
No 230
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=97.71 E-value=1.7e-05 Score=68.47 Aligned_cols=89 Identities=13% Similarity=0.185 Sum_probs=60.2
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-C-----Cc-ccEe
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-I-----PA-ADAI 207 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~-----p~-~D~v 207 (301)
.....+|||+|||+| +.+|. +..++.+++ ..+++++.+|+.+. . +. .|+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 456689999999995 45687 666665443 25899999998754 2 22 4998
Q ss_pred eHh------hhhcc---CChH-------HHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 208 FMK------WVLTT---WTDD-------ECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 208 ~~~------~vlh~---~~d~-------~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
++. .+++. |+.+ ...++|+++.+.|+|||++++..+...
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~ 215 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSME 215 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence 875 33321 2221 236899999999999999998776554
No 231
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=97.68 E-value=1e-05 Score=69.80 Aligned_cols=83 Identities=17% Similarity=0.201 Sum_probs=62.4
Q ss_pred CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CC-cccEeeHhhhh
Q 043063 158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IP-AADAIFMKWVL 213 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p-~~D~v~~~~vl 213 (301)
+.+..+|||+|||+| +.+|. |.+++.+++ .++++++.+|+.+. .+ ..|+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 456689999999995 46787 777776653 25789999999876 21 25999876432
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 214 TTWTDDECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
...++++++.+.|+|||++++......
T Consensus 197 ------~~~~~l~~~~~~LkpgG~l~~s~~~~~ 223 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKDRGVIHYHETVAE 223 (272)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred ------cHHHHHHHHHHHcCCCCEEEEEEcCcc
Confidence 345789999999999999998877553
No 232
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=97.67 E-value=2.7e-05 Score=67.70 Aligned_cols=80 Identities=14% Similarity=0.164 Sum_probs=54.1
Q ss_pred CCCcceEEeecCCc------e--------------eeeehhHHHhhCCCCCceeE-EeCCCCcc-CCc-ccEeeHhhhhc
Q 043063 158 FKGVKRLVDVGGSA------G--------------INFDLPEVVAEAPSIPGVTH-IGGDMFKS-IPA-ADAIFMKWVLT 214 (301)
Q Consensus 158 ~~~~~~vlDvGgG~------g--------------~~~Dlp~v~~~a~~~~ri~~-~~gd~~~~-~p~-~D~v~~~~vlh 214 (301)
+.+..+|||||||+ | +.+|+.+. .+++++ +.+|+.+. ++. .|+|++....+
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~------v~~v~~~i~gD~~~~~~~~~fD~Vvsn~~~~ 134 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF------VSDADSTLIGDCATVHTANKWDLIISDMYDP 134 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC------BCSSSEEEESCGGGCCCSSCEEEEEECCCCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC------CCCCEEEEECccccCCccCcccEEEEcCCcc
Confidence 56678999999944 3 23344221 247899 99999875 444 59999753211
Q ss_pred c-----CC----hHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 215 T-----WT----DDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 215 ~-----~~----d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
. .+ .+....+|+.+++.|+|||++++...
T Consensus 135 ~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~ 172 (290)
T 2xyq_A 135 RTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 172 (290)
T ss_dssp C---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 1 01 12345899999999999999998654
No 233
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=97.66 E-value=3.8e-05 Score=62.99 Aligned_cols=73 Identities=15% Similarity=0.177 Sum_probs=56.3
Q ss_pred CCcceEEeecCCce--------------eeeeh-hHHHhhCCCC----C-ceeEEeCCCCccCCc-ccEeeHhhhhccCC
Q 043063 159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPSI----P-GVTHIGGDMFKSIPA-ADAIFMKWVLTTWT 217 (301)
Q Consensus 159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~----~-ri~~~~gd~~~~~p~-~D~v~~~~vlh~~~ 217 (301)
....+|||+|||+| +++|. |.+++.+++. . +++++.+|+.+ +|. .|+|++.-.+|.+.
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIMNPPFGSQR 126 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEECCCCSSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEEcCCCcccc
Confidence 34579999999996 46787 7777666531 2 79999999876 344 69999998888877
Q ss_pred hHHHHHHHHHHHHhC
Q 043063 218 DDECKLIMENCYKAI 232 (301)
Q Consensus 218 d~~~~~iL~~~~~aL 232 (301)
.....++|+++.+.+
T Consensus 127 ~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 127 KHADRPFLLKAFEIS 141 (207)
T ss_dssp TTTTHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHhc
Confidence 555568899999988
No 234
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=97.65 E-value=3.7e-05 Score=69.42 Aligned_cols=82 Identities=11% Similarity=0.018 Sum_probs=55.7
Q ss_pred CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc--ccEeeHhh
Q 043063 158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA--ADAIFMKW 211 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~--~D~v~~~~ 211 (301)
+.+..+|||+|||+| +++|. |.+++.|++ .++|++..+|+.+. .+. .|+|++.-
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 456789999999996 46787 777777664 15899999999875 442 59999864
Q ss_pred hhccCC-----hHH-HHHHHHHHHHhCCCCCEEEEe
Q 043063 212 VLTTWT-----DDE-CKLIMENCYKAIPAGGKLIAC 241 (301)
Q Consensus 212 vlh~~~-----d~~-~~~iL~~~~~aL~pgg~lli~ 241 (301)
.++... -.+ -.++++.+++.| +|+++++
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i 328 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFI 328 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE--EEEEEEE
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEE
Confidence 433211 111 257888888888 5555444
No 235
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=97.62 E-value=2.3e-05 Score=63.65 Aligned_cols=82 Identities=21% Similarity=0.367 Sum_probs=54.7
Q ss_pred CCCcceEEeecCCceee------------------------eehhHHHhhCCCCCceeEE-eCCCCcc---------CCc
Q 043063 158 FKGVKRLVDVGGSAGIN------------------------FDLPEVVAEAPSIPGVTHI-GGDMFKS---------IPA 203 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g~~------------------------~Dlp~v~~~a~~~~ri~~~-~gd~~~~---------~p~ 203 (301)
+.+..+|||||||+|.. +|+.+. ....+++++ .+|+... ++.
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI----FPLEGATFLCPADVTDPRTSQRILEVLPG 95 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC----CCCTTCEEECSCCTTSHHHHHHHHHHSGG
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc----ccCCCCeEEEeccCCCHHHHHHHHHhcCC
Confidence 45678999999999732 222111 113678999 9998753 222
Q ss_pred --ccEeeHhhhhcc----CChHH-----HHHHHHHHHHhCCCCCEEEEecc
Q 043063 204 --ADAIFMKWVLTT----WTDDE-----CKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 204 --~D~v~~~~vlh~----~~d~~-----~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
.|+|++...+|. ..|.. ...+|+++++.|+|||++++...
T Consensus 96 ~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 96 RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 599998654432 12221 14789999999999999998765
No 236
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=97.60 E-value=3e-05 Score=68.94 Aligned_cols=85 Identities=15% Similarity=0.148 Sum_probs=59.9
Q ss_pred CcceEEeecCCce-------------eeeeh-hHHHhhCCC-------CC-ceeEEeCCCCccC------C-cccEeeHh
Q 043063 160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IP-GVTHIGGDMFKSI------P-AADAIFMK 210 (301)
Q Consensus 160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~-ri~~~~gd~~~~~------p-~~D~v~~~ 210 (301)
...+|||+|||+| +.+|. +.+++.+++ .+ +++++.+|+++.. . ..|+|++.
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~d 232 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD 232 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEEC
Confidence 3569999999995 56787 777776654 12 5999999998642 2 25999883
Q ss_pred hh---------hccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063 211 WV---------LTTWTDDECKLIMENCYKAIPAGGKLIACEPVL 245 (301)
Q Consensus 211 ~v---------lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~ 245 (301)
-- ++++ .+...++++++.+.|+|||.+++.....
T Consensus 233 PP~~~~~~~~~~~~~-~~~~~~ll~~~~~~LkpgG~lli~~~~~ 275 (332)
T 2igt_A 233 PPKFGRGTHGEVWQL-FDHLPLMLDICREILSPKALGLVLTAYS 275 (332)
T ss_dssp CCSEEECTTCCEEEH-HHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred CccccCCchHHHHHH-HHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence 21 1111 1235689999999999999977766543
No 237
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=97.58 E-value=4e-05 Score=65.03 Aligned_cols=54 Identities=9% Similarity=0.318 Sum_probs=39.0
Q ss_pred HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc-CCc
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPA 203 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~-~p~ 203 (301)
..+++.++ ..+..+|||||||+| +++|. +.+++.+++ .++++++.+|+.+. ++.
T Consensus 20 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~ 92 (244)
T 1qam_A 20 DKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPK 92 (244)
T ss_dssp HHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCS
T ss_pred HHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCccc
Confidence 44555554 566789999999996 56787 666665543 36899999999874 553
No 238
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=97.54 E-value=5.8e-05 Score=66.03 Aligned_cols=85 Identities=16% Similarity=0.260 Sum_probs=54.8
Q ss_pred HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCcccEee
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPAADAIF 208 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~~D~v~ 208 (301)
.+++..+ ..+..+|||||||+| +++|. +.+++.+++ .++++++.+|+.+. .+..|+|+
T Consensus 33 ~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~D~Vv 111 (299)
T 2h1r_A 33 KIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKFDVCT 111 (299)
T ss_dssp HHHHHHC-CCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCCSEEE
T ss_pred HHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccCCEEE
Confidence 3444443 556789999999996 56787 777666543 26899999999765 55569988
Q ss_pred HhhhhccCChHHHHHHH---------------HHHHHhCCCCC
Q 043063 209 MKWVLTTWTDDECKLIM---------------ENCYKAIPAGG 236 (301)
Q Consensus 209 ~~~vlh~~~d~~~~~iL---------------~~~~~aL~pgg 236 (301)
+.- .++++.+...++| ..+.+.+.|+|
T Consensus 112 ~n~-py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 112 ANI-PYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp EEC-CGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred EcC-CcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 754 4456666666666 33567777765
No 239
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=97.54 E-value=8e-05 Score=68.05 Aligned_cols=81 Identities=19% Similarity=0.246 Sum_probs=55.8
Q ss_pred CcceEEeecCCce----------------eeeeh-hHHHhhCCCCCceeEEeCCCCccCC--cccEeeHhhhhc------
Q 043063 160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPSIPGVTHIGGDMFKSIP--AADAIFMKWVLT------ 214 (301)
Q Consensus 160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~~p--~~D~v~~~~vlh------ 214 (301)
...+|||+|||+| +++|+ |.+++.+ .+++++.+|+++..+ ..|+|++.--..
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~NPPy~~~~~~~ 115 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILGNPPYGIVGEAS 115 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEECCCCCCBSCTT
T ss_pred CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEECcCccCccccc
Confidence 4469999999996 24465 5555444 689999999987643 259999841111
Q ss_pred ----cCChHH-----------------HHHHHHHHHHhCCCCCEEEEecc
Q 043063 215 ----TWTDDE-----------------CKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 215 ----~~~d~~-----------------~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
+++++. ...+++++.+.|+|||+++++-+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 116 KYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp TCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 122222 12679999999999999887765
No 240
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=97.47 E-value=3.7e-05 Score=71.17 Aligned_cols=88 Identities=13% Similarity=0.221 Sum_probs=61.1
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CCc-ccEeeH-
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IPA-ADAIFM- 209 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p~-~D~v~~- 209 (301)
.....+|||+|||+| +.+|+ +..++.+++ .. |.++.+|..+. .+. .|+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 456789999999995 45687 666666543 24 89999997653 233 599984
Q ss_pred -----hhhh-------ccCChHHH-------HHHHHHHHHhCCCCCEEEEeccccC
Q 043063 210 -----KWVL-------TTWTDDEC-------KLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 210 -----~~vl-------h~~~d~~~-------~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
..++ ..|+.++. .++|+.+.+.|+|||+|+...+...
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~ 233 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFA 233 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCc
Confidence 1222 23443332 6899999999999999998766543
No 241
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=97.44 E-value=0.00013 Score=68.02 Aligned_cols=87 Identities=22% Similarity=0.390 Sum_probs=61.2
Q ss_pred CcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CCc-ccEeeH---
Q 043063 160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IPA-ADAIFM--- 209 (301)
Q Consensus 160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p~-~D~v~~--- 209 (301)
...+|||+|||+| +.+|. +..++.+++ ..+|+++.+|.... .+. .|+|++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 5689999999995 45687 666665543 25799999998753 233 599986
Q ss_pred ---hhhhc-------cCChHH-------HHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 210 ---KWVLT-------TWTDDE-------CKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 210 ---~~vlh-------~~~d~~-------~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
..+++ .|+.++ ..++|+++.+.|+|||+|+...+...
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~ 250 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN 250 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 12332 344332 24789999999999999998776553
No 242
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=97.36 E-value=0.00037 Score=62.79 Aligned_cols=105 Identities=11% Similarity=0.149 Sum_probs=62.6
Q ss_pred EEeCCCCcc-CCcc--cEeeHhhhhccCChHH-------------------------HH------------HHHHHHHHh
Q 043063 192 HIGGDMFKS-IPAA--DAIFMKWVLTTWTDDE-------------------------CK------------LIMENCYKA 231 (301)
Q Consensus 192 ~~~gd~~~~-~p~~--D~v~~~~vlh~~~d~~-------------------------~~------------~iL~~~~~a 231 (301)
-++|.|+.. +|.. |+++.+..||-+++.. +. .+|+..++.
T Consensus 135 gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~e 214 (384)
T 2efj_A 135 AMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEE 214 (384)
T ss_dssp ECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778776 7863 9999999998655421 22 237888999
Q ss_pred CCCCCEEEEeccccCCCC-CChHH-hhhhhhccHHHHhh--------hhccccccCHHHHHHHHHhCC-CCceEEE
Q 043063 232 IPAGGKLIACEPVLPDDS-NESQR-TRALLEGDIFVMTI--------YRAKGKHMTEQEFKQLGFSAG-FPHLRLY 296 (301)
Q Consensus 232 L~pgg~lli~e~~~~~~~-~~~~~-~~~~~~~d~~m~~~--------~~~~g~~rt~~e~~~~l~~aG-f~~~~~~ 296 (301)
|+|||++++.-...+... .+... .-...+.++...++ ...--.-++.+|++++++++| |++.++.
T Consensus 215 L~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le 290 (384)
T 2efj_A 215 LISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLE 290 (384)
T ss_dssp EEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEE
T ss_pred hccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEE
Confidence 999999988776554320 10000 11111222211110 000123369999999999984 7776654
No 243
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=97.35 E-value=9.8e-05 Score=65.81 Aligned_cols=84 Identities=18% Similarity=0.211 Sum_probs=61.5
Q ss_pred CcceEEeecCCce--------------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCccCC-c-ccEeeHhh
Q 043063 160 GVKRLVDVGGSAG--------------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKSIP-A-ADAIFMKW 211 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p-~-~D~v~~~~ 211 (301)
...+|||+|||+| +++|+ |.+++.|+. ..++.+..+|.+.+.+ . .|+|++.-
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NP 209 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL 209 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECC
Confidence 4679999999996 23465 555555543 1268999999987643 2 59999987
Q ss_pred hhccCChHHH----------------HHHHHHHHHhCCCCCEEEEecc
Q 043063 212 VLTTWTDDEC----------------KLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 212 vlh~~~d~~~----------------~~iL~~~~~aL~pgg~lli~e~ 243 (301)
.++.++.++. ..+++++.+.|+|||+++++-+
T Consensus 210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 7776655432 2689999999999998877764
No 244
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=97.32 E-value=0.00018 Score=66.20 Aligned_cols=89 Identities=16% Similarity=0.201 Sum_probs=61.8
Q ss_pred CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc---CC-c-ccEeeH--
Q 043063 158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS---IP-A-ADAIFM-- 209 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~---~p-~-~D~v~~-- 209 (301)
..+..+|||+|||+| +.+|. +..++.+++ .-+++++.+|+... ++ . .|+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 456679999999996 45676 555544432 12588999998764 33 2 599985
Q ss_pred ----hhhhccCChH-------HH-------HHHHHHHHHhCCCCCEEEEeccccC
Q 043063 210 ----KWVLTTWTDD-------EC-------KLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 210 ----~~vlh~~~d~-------~~-------~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
..+++..++. +. .++|+++.+.|+|||+|++.++...
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~ 378 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 378 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 3455544442 21 4889999999999999999886554
No 245
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=97.31 E-value=0.0013 Score=58.71 Aligned_cols=106 Identities=9% Similarity=0.120 Sum_probs=64.1
Q ss_pred eEEeCCCCcc-CCcc--cEeeHhhhhccCChH-------------------------------HHHHHHHHHHHhCCCCC
Q 043063 191 THIGGDMFKS-IPAA--DAIFMKWVLTTWTDD-------------------------------ECKLIMENCYKAIPAGG 236 (301)
Q Consensus 191 ~~~~gd~~~~-~p~~--D~v~~~~vlh~~~d~-------------------------------~~~~iL~~~~~aL~pgg 236 (301)
.-++|.|+.. +|.. |+++.+..||-+++. +-..+|+..++.|+|||
T Consensus 124 ~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG 203 (359)
T 1m6e_X 124 NGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGG 203 (359)
T ss_dssp EEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTC
T ss_pred EecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3467888876 8873 999999999865541 22356999999999999
Q ss_pred EEEEeccccCCCCC-Ch-----HHhhhhhhccHHHHhh--------hhccccccCHHHHHHHHHhCCC-CceEEE
Q 043063 237 KLIACEPVLPDDSN-ES-----QRTRALLEGDIFVMTI--------YRAKGKHMTEQEFKQLGFSAGF-PHLRLY 296 (301)
Q Consensus 237 ~lli~e~~~~~~~~-~~-----~~~~~~~~~d~~m~~~--------~~~~g~~rt~~e~~~~l~~aGf-~~~~~~ 296 (301)
++++.-...+.... .. ...-...+.|+...++ ...--.-++.+|++++++++|+ ++..+.
T Consensus 204 ~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e 278 (359)
T 1m6e_X 204 RMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE 278 (359)
T ss_dssp EEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred eEEEEEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEE
Confidence 99887765543210 00 0000111122211110 0011234689999999999955 665543
No 246
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=97.29 E-value=5.1e-05 Score=69.01 Aligned_cols=85 Identities=19% Similarity=0.255 Sum_probs=60.3
Q ss_pred CcceEEeecCCce--------------eeeeh-hHHHhhCCC------C-CceeEEeCCCCccC------C-cccEeeHh
Q 043063 160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS------I-PGVTHIGGDMFKSI------P-AADAIFMK 210 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~------~-~ri~~~~gd~~~~~------p-~~D~v~~~ 210 (301)
+..+|||+|||+| +.+|. |..++.+++ . ++++++.+|+++.. + ..|+|++.
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d 296 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 296 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence 5679999999995 46787 777766653 1 28999999987642 2 24999873
Q ss_pred hhhccCCh-------HHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063 211 WVLTTWTD-------DECKLIMENCYKAIPAGGKLIACEPV 244 (301)
Q Consensus 211 ~vlh~~~d-------~~~~~iL~~~~~aL~pgg~lli~e~~ 244 (301)
--.+..+. .....+++++.+.|+|||.+++....
T Consensus 297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 21111111 34568999999999999998887763
No 247
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=97.28 E-value=8.3e-05 Score=67.41 Aligned_cols=85 Identities=13% Similarity=0.128 Sum_probs=59.2
Q ss_pred CCcceEEeecCCce--------------eeeeh-hHHHhhCCC------C-C-ceeEEeCCCCccCC-------cccEee
Q 043063 159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS------I-P-GVTHIGGDMFKSIP-------AADAIF 208 (301)
Q Consensus 159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~------~-~-ri~~~~gd~~~~~p-------~~D~v~ 208 (301)
.+..+|||+|||+| +.+|. |.+++.|++ . + +++|+.+|+++.++ ..|+|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 45679999999995 46787 777776653 1 2 89999999976422 249998
Q ss_pred Hhhhh-----ccCCh--HHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 209 MKWVL-----TTWTD--DECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 209 ~~~vl-----h~~~d--~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
+.--. +...+ +...++++.+.+.|+|||.|++...
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 73211 12222 2345688899999999999887654
No 248
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=97.28 E-value=7.3e-05 Score=67.68 Aligned_cols=85 Identities=19% Similarity=0.185 Sum_probs=60.4
Q ss_pred CcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccC------Cc-ccEeeHhhh
Q 043063 160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSI------PA-ADAIFMKWV 212 (301)
Q Consensus 160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~------p~-~D~v~~~~v 212 (301)
+..+|||+|||+| +.+|. |..++.+++ .++++++.+|+++.. +. .|+|++.--
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP 288 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP 288 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCC
Confidence 5679999999996 46787 777776653 245999999987642 22 499987321
Q ss_pred hccCCh-------HHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063 213 LTTWTD-------DECKLIMENCYKAIPAGGKLIACEPV 244 (301)
Q Consensus 213 lh~~~d-------~~~~~iL~~~~~aL~pgg~lli~e~~ 244 (301)
.+..+. +....+++++.+.|+|||.+++....
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 289 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 111111 33568999999999999999887753
No 249
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=97.27 E-value=0.00011 Score=65.24 Aligned_cols=82 Identities=12% Similarity=0.127 Sum_probs=61.0
Q ss_pred CCcceEEeecCCce------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCcccEeeHhhhhccCCh
Q 043063 159 KGVKRLVDVGGSAG------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPAADAIFMKWVLTTWTD 218 (301)
Q Consensus 159 ~~~~~vlDvGgG~g------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~~D~v~~~~vlh~~~d 218 (301)
.+..+|||+|||+| +.+|. |..++.+++ .++++++.+|+++.....|+|++.- |
T Consensus 194 ~~~~~VLDlg~G~G~~~l~a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dp-----P- 267 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNL-----P- 267 (336)
T ss_dssp CTTCEEEETTCTTSHHHHHTTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECC-----T-
T ss_pred CCCCEEEEccCccCHHHHhccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECC-----c-
Confidence 35679999999996 45687 777766553 2589999999986553469998732 1
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 219 DECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 219 ~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
.....+++.+.+.|+|||.+++.+....
T Consensus 268 ~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 268 KFAHKFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp TTGGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred HhHHHHHHHHHHHcCCCCEEEEEEeecC
Confidence 1223889999999999999998887554
No 250
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=97.26 E-value=0.00011 Score=70.66 Aligned_cols=112 Identities=13% Similarity=0.008 Sum_probs=72.4
Q ss_pred CchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCCCcceEEeecCCceeeeehh-HHHh-----------------
Q 043063 121 PTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAGINFDLP-EVVA----------------- 182 (301)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~g~~~Dlp-~v~~----------------- 182 (301)
..|+.+++++-..+.|.+|+... +.+....-.+...|+|||||+|++.+.. ...+
T Consensus 377 ~tYe~fekD~vRy~~Y~~AI~~a-------l~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kV 449 (745)
T 3ua3_A 377 GVYNTFEQDQIKYDVYGEAVVGA-------LKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKL 449 (745)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH-------HHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEE
T ss_pred HHHHHHcCChhhHHHHHHHHHHH-------HHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEE
Confidence 35777888888888998888542 2111111123568999999998664320 0000
Q ss_pred -----------hCC-----C-CCceeEEeCCCCcc-C------Cc-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCE
Q 043063 183 -----------EAP-----S-IPGVTHIGGDMFKS-I------PA-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGK 237 (301)
Q Consensus 183 -----------~a~-----~-~~ri~~~~gd~~~~-~------p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~ 237 (301)
..+ . .++|+++.+|+.+- . |+ +|+|+.-..=.....+-....|..+.+.|+|||.
T Consensus 450 yAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi 529 (745)
T 3ua3_A 450 YIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTI 529 (745)
T ss_dssp EEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCE
T ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcE
Confidence 000 0 37899999999875 6 44 6998876653333444466788888899999996
Q ss_pred EE
Q 043063 238 LI 239 (301)
Q Consensus 238 ll 239 (301)
++
T Consensus 530 ~i 531 (745)
T 3ua3_A 530 SI 531 (745)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 251
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=97.25 E-value=0.00066 Score=60.18 Aligned_cols=129 Identities=12% Similarity=0.119 Sum_probs=86.5
Q ss_pred CcceEEeecCCce-------------ee--eehhHHHhhCCC---------------------------CCceeEEeCCC
Q 043063 160 GVKRLVDVGGSAG-------------IN--FDLPEVVAEAPS---------------------------IPGVTHIGGDM 197 (301)
Q Consensus 160 ~~~~vlDvGgG~g-------------~~--~Dlp~v~~~a~~---------------------------~~ri~~~~gd~ 197 (301)
+...||.+|||.. .+ +|.|++++.-++ .++..+++.|+
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 4689999999982 23 477987754221 26899999999
Q ss_pred Ccc-C--------C--c-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHH
Q 043063 198 FKS-I--------P--A-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFV 265 (301)
Q Consensus 198 ~~~-~--------p--~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m 265 (301)
.+. + + . ..++++--+|++++.+++..+|+.+.+.+ |+|.+++.|.+.+..+... ..... ...+.-
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~-fg~~m-~~~l~~ 253 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDR-FGAIM-QSNLKE 253 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCC-HHHHH-HHHHHH
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcch-HHHHH-HHHhhc
Confidence 873 2 1 1 26899999999999999999999999877 7888889998887332211 11100 000000
Q ss_pred -Hhhhhcc-ccccCHHHHHHHHHhCCCC
Q 043063 266 -MTIYRAK-GKHMTEQEFKQLGFSAGFP 291 (301)
Q Consensus 266 -~~~~~~~-g~~rt~~e~~~~l~~aGf~ 291 (301)
.++...+ ..-.|.++..+.|.++||+
T Consensus 254 ~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 254 SRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred ccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 1101111 1235899999999999997
No 252
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=97.24 E-value=0.00013 Score=67.44 Aligned_cols=89 Identities=15% Similarity=0.271 Sum_probs=60.5
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CCc-ccEeeHh
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IPA-ADAIFMK 210 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p~-~D~v~~~ 210 (301)
.....+|||+|||+| +.+|+ +..++.+++ ..+|.+..+|.... .+. .|+|++-
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 456789999999995 35687 666655543 35799999997653 333 5998862
Q ss_pred ------hhh-------ccCChHH-------HHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 211 ------WVL-------TTWTDDE-------CKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 211 ------~vl-------h~~~d~~-------~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
.++ ..|+.++ ..++|+++.+.|+|||+|+...+...
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 238 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA 238 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecc
Confidence 122 2233222 13889999999999999998776553
No 253
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=97.12 E-value=0.00019 Score=52.93 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=54.1
Q ss_pred cccccccccCC-CCCCHHHHHHHh--CCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcC
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRI--LPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTD 77 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~--~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~ 77 (301)
.+..|++.|.. |+.|+.+||+.+ ++ .+..+++-|+.|...|+|+..+ .+.|++|+.+..+...
T Consensus 14 ~d~~IL~~L~~~g~~s~~eLA~~l~~gi----S~~aVs~rL~~Le~~GLV~~~~----rg~Y~LT~~G~~~l~~ 79 (111)
T 3b73_A 14 WDDRILEIIHEEGNGSPKELEDRDEIRI----SKSSVSRRLKKLADHDLLQPLA----NGVYVITEEGEAYLNG 79 (111)
T ss_dssp HHHHHHHHHHHHSCBCHHHHHTSTTCCS----CHHHHHHHHHHHHHTTSEEECS----TTCEEECHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEecC----CceEEECchHHHHHHH
Confidence 45678889976 999999999999 99 6889999999999999999872 5689999999765544
No 254
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=97.11 E-value=0.00013 Score=66.25 Aligned_cols=84 Identities=20% Similarity=0.186 Sum_probs=59.8
Q ss_pred CCcceEEeecCCce--------------eeeeh-hHHHhhCCC------C-C-ceeEEeCCCCccCC-------cccEee
Q 043063 159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS------I-P-GVTHIGGDMFKSIP-------AADAIF 208 (301)
Q Consensus 159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~------~-~-ri~~~~gd~~~~~p-------~~D~v~ 208 (301)
.+..+|||+|||+| +.+|. +..++.+++ . + +++++.+|+++..+ ..|+|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 35679999999995 46787 777766543 2 3 89999999876422 259988
Q ss_pred Hhhhh--------ccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 209 MKWVL--------TTWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 209 ~~~vl--------h~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
+.--. +... .....++.++.+.|+|||.+++...
T Consensus 299 ~dpP~~~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGAC-RGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp ECCSSTTTCSSSSSCCC-THHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ECCCCCCCChhHHHHHH-HHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 74211 1111 3456899999999999999887654
No 255
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=97.11 E-value=0.0002 Score=51.35 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=48.6
Q ss_pred ccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063 8 DGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK 72 (301)
Q Consensus 8 ~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~ 72 (301)
++.|++.| .++.|+.+||+.+|+ .+..+.+.|+.|...|++.+. . +.|++++.++
T Consensus 33 r~~Il~~L-~~~~~~~eLa~~l~i----s~~tv~~~L~~L~~~Glv~~~----~-g~y~l~~~g~ 87 (96)
T 1y0u_A 33 RRKILRML-DKGRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERV----G-ERWVVTDAGK 87 (96)
T ss_dssp HHHHHHHH-HTTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----T-TEEEECTTTC
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE----C-CEEEECCCch
Confidence 45678888 789999999999999 788999999999999999988 3 6999998654
No 256
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=96.90 E-value=0.00075 Score=58.76 Aligned_cols=61 Identities=11% Similarity=0.223 Sum_probs=44.6
Q ss_pred HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc-CCc--ccEe
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPA--ADAI 207 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~-~p~--~D~v 207 (301)
..+++..+ .....+|||||||+| +.+|. +.+++.+++ .++++++.+|+.+. ++. .|+|
T Consensus 40 ~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD~I 118 (295)
T 3gru_A 40 NKAVESAN-LTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFNKV 118 (295)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCCSEE
T ss_pred HHHHHhcC-CCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCccEE
Confidence 34555554 666789999999996 56787 666666554 37999999999874 665 4888
Q ss_pred eHh
Q 043063 208 FMK 210 (301)
Q Consensus 208 ~~~ 210 (301)
+.+
T Consensus 119 v~N 121 (295)
T 3gru_A 119 VAN 121 (295)
T ss_dssp EEE
T ss_pred EEe
Confidence 855
No 257
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=96.87 E-value=0.00018 Score=70.20 Aligned_cols=85 Identities=15% Similarity=0.203 Sum_probs=60.0
Q ss_pred CcceEEeecCCce--------------eeeeh-hHHHhhCCC-------C-CceeEEeCCCCccC---Cc-ccEeeHhhh
Q 043063 160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------I-PGVTHIGGDMFKSI---PA-ADAIFMKWV 212 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~-~ri~~~~gd~~~~~---p~-~D~v~~~~v 212 (301)
...+|||+|||+| +.+|+ +..++.+++ . ++++++.+|+++.+ .. .|+|++.--
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP 618 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence 4579999999995 46787 777766653 1 48999999998742 22 599987321
Q ss_pred h--------ccCC-hHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063 213 L--------TTWT-DDECKLIMENCYKAIPAGGKLIACEPV 244 (301)
Q Consensus 213 l--------h~~~-d~~~~~iL~~~~~aL~pgg~lli~e~~ 244 (301)
. +.+. ...-.++++++.+.|+|||.|++....
T Consensus 619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 1 1111 134568899999999999999866543
No 258
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=96.85 E-value=0.00061 Score=61.83 Aligned_cols=87 Identities=11% Similarity=0.083 Sum_probs=58.2
Q ss_pred CcceEEeecCCce-------------eeeeh-hHHHhhCCCC-----CceeEEeCCCCccC---Cc-ccEeeHhhhhccC
Q 043063 160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI-----PGVTHIGGDMFKSI---PA-ADAIFMKWVLTTW 216 (301)
Q Consensus 160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~-----~ri~~~~gd~~~~~---p~-~D~v~~~~vlh~~ 216 (301)
+..+|||+|||+| +.+|+ |..++.+++. -..++..+|+++.+ +. .|+|++.--....
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~ 293 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVK 293 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCS
T ss_pred CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCC
Confidence 4689999999995 56798 7777766541 11346688988642 22 5999874221111
Q ss_pred Ch-------HHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063 217 TD-------DECKLIMENCYKAIPAGGKLIACEPVLP 246 (301)
Q Consensus 217 ~d-------~~~~~iL~~~~~aL~pgg~lli~e~~~~ 246 (301)
+. ..-.++++.+.+.|+|||+|+++.+...
T Consensus 294 ~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~ 330 (393)
T 4dmg_A 294 RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH 330 (393)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 11 1235889999999999999987776443
No 259
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=96.84 E-value=0.0013 Score=60.44 Aligned_cols=77 Identities=13% Similarity=0.214 Sum_probs=51.7
Q ss_pred CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC-------cccEeeHh
Q 043063 158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP-------AADAIFMK 210 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p-------~~D~v~~~ 210 (301)
..+..+|||+|||+| +++|. +.+++.|++ .++++|+.+|+.+.++ ..|+|++.
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d 363 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred CCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEEC
Confidence 445679999999996 56787 777777653 2589999999987422 24998862
Q ss_pred hhhccCChHHHHHHHHHHHHhCCCCCEEEE
Q 043063 211 WVLTTWTDDECKLIMENCYKAIPAGGKLIA 240 (301)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli 240 (301)
-|...+..+++.+.+ ++|++.+++
T Consensus 364 -----PPr~g~~~~~~~l~~-~~p~~ivyv 387 (433)
T 1uwv_A 364 -----PARAGAAGVMQQIIK-LEPIRIVYV 387 (433)
T ss_dssp -----CCTTCCHHHHHHHHH-HCCSEEEEE
T ss_pred -----CCCccHHHHHHHHHh-cCCCeEEEE
Confidence 232223355665553 678766654
No 260
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=96.82 E-value=0.00026 Score=47.19 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=45.3
Q ss_pred ccccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063 8 DGGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT 68 (301)
Q Consensus 8 ~lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 68 (301)
+..|++.|.. .|+|..+||+.+|+ +...+.+.|..|...|+|... ..++|+++
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lgl----sr~tv~~~l~~L~~~G~I~~~----~~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQV----PKKTLNQVLYRLKKEDRVSSP----SPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEE----ETTEEEEC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEecC----CCceEeeC
Confidence 4568888864 58999999999999 789999999999999999876 36789875
No 261
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=96.81 E-value=0.0013 Score=55.77 Aligned_cols=70 Identities=19% Similarity=0.187 Sum_probs=46.4
Q ss_pred HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC--CCceeEEeCCCCcc-CCc--ccEee
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS--IPGVTHIGGDMFKS-IPA--ADAIF 208 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~--~~ri~~~~gd~~~~-~p~--~D~v~ 208 (301)
..+++..+ .....+|||||||+| +++|+ +.+++.+++ ..+++++.+|+.+. ++. .+.++
T Consensus 21 ~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~v 99 (249)
T 3ftd_A 21 KKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKELKV 99 (249)
T ss_dssp HHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSEEE
T ss_pred HHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCcEE
Confidence 34445553 556789999999995 46787 677776654 36899999999874 554 14555
Q ss_pred HhhhhccCChH
Q 043063 209 MKWVLTTWTDD 219 (301)
Q Consensus 209 ~~~vlh~~~d~ 219 (301)
+.+.-++.+.+
T Consensus 100 v~NlPy~i~~~ 110 (249)
T 3ftd_A 100 VGNLPYNVASL 110 (249)
T ss_dssp EEECCTTTHHH
T ss_pred EEECchhccHH
Confidence 55554444443
No 262
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=96.78 E-value=0.0011 Score=60.76 Aligned_cols=76 Identities=9% Similarity=0.026 Sum_probs=52.2
Q ss_pred CcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc-ccEeeHhhhhccCCh
Q 043063 160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA-ADAIFMKWVLTTWTD 218 (301)
Q Consensus 160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~-~D~v~~~~vlh~~~d 218 (301)
+..+|||+|||+| +.+|. +.+++.|++ .+ ++|+.+|+++..+. .|+|++.---....
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g~~- 367 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAGLH- 367 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTCSC-
T ss_pred CCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccchH-
Confidence 4579999999996 56787 777777654 23 99999999876543 69988732211111
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEe
Q 043063 219 DECKLIMENCYKAIPAGGKLIAC 241 (301)
Q Consensus 219 ~~~~~iL~~~~~aL~pgg~lli~ 241 (301)
..+++.+. .|+|+|.+++.
T Consensus 368 ---~~~~~~l~-~l~p~givyvs 386 (425)
T 2jjq_A 368 ---PRLVKRLN-REKPGVIVYVS 386 (425)
T ss_dssp ---HHHHHHHH-HHCCSEEEEEE
T ss_pred ---HHHHHHHH-hcCCCcEEEEE
Confidence 13555554 48999988775
No 263
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=96.77 E-value=0.00033 Score=62.49 Aligned_cols=84 Identities=13% Similarity=0.130 Sum_probs=56.2
Q ss_pred CcceEEeecCCce--------------eeeeh-hHHHhhCCCC--------------CceeEEeCCCCccCC------c-
Q 043063 160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPSI--------------PGVTHIGGDMFKSIP------A- 203 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~--------------~ri~~~~gd~~~~~p------~- 203 (301)
++.+|||||||.| +.+|+ |.+++.+++. +|++++.+|.++.+. .
T Consensus 188 ~pkrVL~IGgG~G~~arellk~~~~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~ 267 (364)
T 2qfm_A 188 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE 267 (364)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred CCCEEEEEECChhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCC
Confidence 5689999999996 46787 7787776431 289999999987422 2
Q ss_pred ccEeeHhhhh-c-cCCh--HHHHHHHHHH----HHhCCCCCEEEEecc
Q 043063 204 ADAIFMKWVL-T-TWTD--DECKLIMENC----YKAIPAGGKLIACEP 243 (301)
Q Consensus 204 ~D~v~~~~vl-h-~~~d--~~~~~iL~~~----~~aL~pgg~lli~e~ 243 (301)
.|+|++--.- . .... -....+++.+ +++|+|||.+++.-.
T Consensus 268 fDvII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~pgGilv~qs~ 315 (364)
T 2qfm_A 268 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN 315 (364)
T ss_dssp EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ceEEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCCCCcEEEEEcC
Confidence 5998875321 1 0001 0124555655 999999998887643
No 264
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.76 E-value=0.00079 Score=48.67 Aligned_cols=59 Identities=20% Similarity=0.184 Sum_probs=47.5
Q ss_pred cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063 7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI 70 (301)
Q Consensus 7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 70 (301)
.++.|+..|.+|+.|+.+||+.+|+ .+..+.+.|+.|...|++...+.+ ..-.|++|+.
T Consensus 24 ~r~~Il~~L~~~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g-~~~~y~l~~~ 82 (102)
T 3pqk_A 24 VRLMLVCTLVEGEFSVGELEQQIGI----GQPTLSQQLGVLRESGIVETRRNI-KQIFYRLTEA 82 (102)
T ss_dssp HHHHHHHHHHTCCBCHHHHHHHHTC----CTTHHHHHHHHHHHTTSEEEECSS-SCCEEEECSS
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeC-CEEEEEECcH
Confidence 4566788887799999999999999 688999999999999999876411 2235777763
No 265
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.75 E-value=0.00043 Score=47.57 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=47.7
Q ss_pred cccccccCC-CCCCHHHHHHHhCCCCCCCcc-cHHHHHHHHhcCcceeccccccCCCeEecChhchh
Q 043063 9 GGKKGRLAN-TPLSASQILTRILPSGGGDAE-NLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKS 73 (301)
Q Consensus 9 lglf~~L~~-g~~t~~ela~~~~~~~~~~~~-~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~ 73 (301)
-.|.+.|.. ||.|+.+||+.+|+ .+. .+++.|..|...|+|++.+.+ .+ .|++|+.++.
T Consensus 14 ~~IL~~Lk~~g~~ta~eiA~~Lgi----t~~~aVr~hL~~Le~eGlV~~~~~g-RP-~w~LT~~g~~ 74 (79)
T 1xmk_A 14 EKICDYLFNVSDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQGTT-PP-IWHLTDKKRE 74 (79)
T ss_dssp HHHHHHHHHTCCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEECSS-SC-EEEECHHHHT
T ss_pred HHHHHHHHHcCCcCHHHHHHHcCC----CcHHHHHHHHHHHHHCCCEEecCCC-CC-CeEeCHhHHh
Confidence 346677764 89999999999999 677 999999999999999865321 23 8999998753
No 266
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.72 E-value=0.00079 Score=48.25 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=48.1
Q ss_pred cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063 7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI 70 (301)
Q Consensus 7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 70 (301)
.++.|+..|.+++.|+.+||+.+|+ .+..+.+.|+.|...|++.+.+.+ ..-.|++++.
T Consensus 24 ~r~~Il~~L~~~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g-~~~~y~l~~~ 82 (98)
T 3jth_A 24 RRLQILCMLHNQELSVGELCAKLQL----SQSALSQHLAWLRRDGLVTTRKEA-QTVYYTLKSE 82 (98)
T ss_dssp HHHHHHHHTTTSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCT-TCCEEEECCH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeC-CEEEEEECHH
Confidence 3567888898899999999999999 788999999999999999877421 2235777764
No 267
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=96.71 E-value=0.0012 Score=47.14 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=48.9
Q ss_pred ccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhc
Q 043063 10 GKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVT 76 (301)
Q Consensus 10 glf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~ 76 (301)
.|+..|..+ .+..+||..+|+ +++.++..++.|...|++++. .+.|.+|+.++.+..
T Consensus 12 ~IL~~i~~~-~~~t~La~~~~l----s~~~~~~~l~~L~~~GLI~~~-----~~~~~LT~kG~~~l~ 68 (95)
T 1r7j_A 12 AILEACKSG-SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQE-----GKQYMLTKKGEELLE 68 (95)
T ss_dssp HHHHHHTTC-BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTEEEECHHHHHHHH
T ss_pred HHHHHHHcC-CCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEE-----CCeeEEChhHHHHHH
Confidence 344555556 899999999999 899999999999999999998 567999999986653
No 268
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=96.64 E-value=0.0027 Score=55.63 Aligned_cols=134 Identities=13% Similarity=0.072 Sum_probs=84.8
Q ss_pred CcceEEeecCCc-----------e-ee--eehhHHHhhCC---------CCCceeEEeCCCCccCC----------c-cc
Q 043063 160 GVKRLVDVGGSA-----------G-IN--FDLPEVVAEAP---------SIPGVTHIGGDMFKSIP----------A-AD 205 (301)
Q Consensus 160 ~~~~vlDvGgG~-----------g-~~--~Dlp~v~~~a~---------~~~ri~~~~gd~~~~~p----------~-~D 205 (301)
+...||+||||. + .+ +|.|.|++..+ ..++..+++.|+.+.+. . .-
T Consensus 102 g~~QvV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~Pt 181 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSART 181 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCE
T ss_pred CCCeEEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCCE
Confidence 457899999998 1 23 47798877643 24789999999986421 1 14
Q ss_pred EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHh------hhhccccc-cC-
Q 043063 206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMT------IYRAKGKH-MT- 277 (301)
Q Consensus 206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~------~~~~~g~~-rt- 277 (301)
++++-.+||+++++++..+|+.+.+.+.||+.|++ |.+.++.. .+ .........-++-. |....-.. ++
T Consensus 182 ~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~-d~~~~~~~-~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~ 258 (310)
T 2uyo_A 182 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV-ETSPLHGD-EW-REQMQLRFRRVSDALGFEQAVDVQELIYHDEN 258 (310)
T ss_dssp EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE-ECCCTTCS-HH-HHHHHHHHHHHHC-----------CCTTCCTT
T ss_pred EEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEE-EecCCCCc-ch-hHHHHHHHHHHHHHcCCcCCCCccccccCCCC
Confidence 88888999999999999999999998888886654 55544321 11 00000000000000 00001112 25
Q ss_pred HHHHHHHHHhCCCCceEEEE
Q 043063 278 EQEFKQLGFSAGFPHLRLYR 297 (301)
Q Consensus 278 ~~e~~~~l~~aGf~~~~~~~ 297 (301)
.++..++|.+.||+.+ .+.
T Consensus 259 ~~~~~~~f~~~G~~~~-~~~ 277 (310)
T 2uyo_A 259 RAVVADWLNRHGWRAT-AQS 277 (310)
T ss_dssp CCCHHHHHTTTTEEEE-EEE
T ss_pred hHHHHHHHHHCcCccc-cCC
Confidence 7899999999999887 443
No 269
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=96.64 E-value=0.00083 Score=58.22 Aligned_cols=84 Identities=18% Similarity=0.237 Sum_probs=59.4
Q ss_pred CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-----------CCceeEEeCCCCccCC---c-ccEe
Q 043063 159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-----------IPGVTHIGGDMFKSIP---A-ADAI 207 (301)
Q Consensus 159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-----------~~ri~~~~gd~~~~~p---~-~D~v 207 (301)
.++++||-||||.| +++|+ |.|++.+++ .+|++++.+|.+.-+. . .|+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 35789999999996 45677 788876643 4799999999987632 2 4988
Q ss_pred eHhhhhccCChH---HHHHHHHHHHHhCCCCCEEEEecc
Q 043063 208 FMKWVLTTWTDD---ECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 208 ~~~~vlh~~~d~---~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
+.=..= ..... -...+++.++++|+|||.+++.-.
T Consensus 162 i~D~~d-p~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~ 199 (294)
T 3o4f_A 162 ISDCTD-PIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp EESCCC-CCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEeCCC-cCCCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence 753221 11111 124789999999999999887643
No 270
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=96.63 E-value=0.0014 Score=56.39 Aligned_cols=75 Identities=8% Similarity=-0.001 Sum_probs=49.2
Q ss_pred hhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC---CCceeEEeCCCCcc-CCc--ccEeeHh
Q 043063 151 ILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS---IPGVTHIGGDMFKS-IPA--ADAIFMK 210 (301)
Q Consensus 151 ~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~---~~ri~~~~gd~~~~-~p~--~D~v~~~ 210 (301)
+++..+ .... +|||||||+| +.+|+ +.+++.+++ ..+++++.+|+.+. ++. ....+++
T Consensus 39 Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~~iv~ 116 (271)
T 3fut_A 39 IVEAAR-PFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSLLVA 116 (271)
T ss_dssp HHHHHC-CCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTEEEEE
T ss_pred HHHhcC-CCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCccEEEe
Confidence 444443 5556 9999999996 56787 666665543 36899999999874 553 2234455
Q ss_pred hhhccCChHHHHHHHHH
Q 043063 211 WVLTTWTDDECKLIMEN 227 (301)
Q Consensus 211 ~vlh~~~d~~~~~iL~~ 227 (301)
+.-++.+.+-..++|..
T Consensus 117 NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 117 NLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EECSSCCHHHHHHHHHH
T ss_pred cCcccccHHHHHHHhcC
Confidence 56666776555555554
No 271
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=96.59 E-value=0.0011 Score=48.82 Aligned_cols=62 Identities=21% Similarity=0.164 Sum_probs=51.3
Q ss_pred ccccccccCCCCCC--HHHHHHHh-CCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063 8 DGGKKGRLANTPLS--ASQILTRI-LPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~~g~~t--~~ela~~~-~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 75 (301)
++-|+..|..|+.+ +.||++.+ |+ .+..+.+.|+.|...|+|++... ..-.|++|+.++.+.
T Consensus 29 rl~IL~~L~~g~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~--r~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 29 TMLIISVLGNGSTRQNFNDIRSSIPGI----SSTILSRRIKDLIDSGLVERRSG--QITTYALTEKGMNVR 93 (111)
T ss_dssp HHHHHHHHTSSSSCBCHHHHHHTSTTC----CHHHHHHHHHHHHHTTSEEEEES--SSEEEEECHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHccCC----CHHHHHHHHHHHHHCCCEEEeec--CcEEEEECccHHHHH
Confidence 44567777778888 99999999 99 78999999999999999998731 134699999987665
No 272
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.58 E-value=0.0012 Score=48.30 Aligned_cols=63 Identities=22% Similarity=0.172 Sum_probs=49.6
Q ss_pred cccccccCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhh
Q 043063 9 GGKKGRLANTPLSASQILTRI-LPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLV 75 (301)
Q Consensus 9 lglf~~L~~g~~t~~ela~~~-~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~ 75 (301)
+.|+..|..|+.+..||++.+ |+ ++..+.+.|+.|...|+|++..... ..-.|.+|+.++.+.
T Consensus 17 ~~IL~~L~~~~~~~~eLa~~l~~i----s~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 17 XVILXHLTHGKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLE 82 (107)
T ss_dssp HHHHHHHTTCCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred HHHHHHHHhCCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHH
Confidence 446667777899999999999 99 7999999999999999999874210 112599998876544
No 273
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=96.57 E-value=0.0015 Score=59.18 Aligned_cols=69 Identities=4% Similarity=-0.089 Sum_probs=43.3
Q ss_pred eeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc-ccEeeHhhhhcc-CC-hHHHHHHHHHHHHhCCC--CCEEEE
Q 043063 175 FDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA-ADAIFMKWVLTT-WT-DDECKLIMENCYKAIPA--GGKLIA 240 (301)
Q Consensus 175 ~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~-~~-d~~~~~iL~~~~~aL~p--gg~lli 240 (301)
+|. |.+++.|++ .++|+++.+|+++. .+. .|+|++.--.+. .. +++...+.+.+.+.|++ |++++|
T Consensus 269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 348 (393)
T 3k0b_A 269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYV 348 (393)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEE
Confidence 355 556655543 25799999999875 333 599998733321 12 24455666666666655 888887
Q ss_pred ecc
Q 043063 241 CEP 243 (301)
Q Consensus 241 ~e~ 243 (301)
+..
T Consensus 349 it~ 351 (393)
T 3k0b_A 349 LTS 351 (393)
T ss_dssp EEC
T ss_pred EEC
Confidence 755
No 274
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=96.51 E-value=0.0049 Score=55.64 Aligned_cols=95 Identities=12% Similarity=0.027 Sum_probs=64.6
Q ss_pred hHHhhhcCCCCCCcceEEeecCCcee-----------------------------------------------------e
Q 043063 148 MTSILDGYDGFKGVKRLVDVGGSAGI-----------------------------------------------------N 174 (301)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvGgG~g~-----------------------------------------------------~ 174 (301)
+..++.... |.+...++|.+||+|+ +
T Consensus 183 Aaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G 261 (384)
T 3ldg_A 183 AAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG 261 (384)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence 344555553 8888999999999962 2
Q ss_pred eeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc-ccEeeHhhhhcc-CC-hHHHHHHHHHHHHhCCC--CCEEEE
Q 043063 175 FDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA-ADAIFMKWVLTT-WT-DDECKLIMENCYKAIPA--GGKLIA 240 (301)
Q Consensus 175 ~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~-~~-d~~~~~iL~~~~~aL~p--gg~lli 240 (301)
+|. +.+++.|++ .++|++..+|+++. .+. .|+|++.--.+. +. .++...+.+.+.+.|++ |+++.|
T Consensus 262 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 341 (384)
T 3ldg_A 262 FDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFI 341 (384)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 354 555555543 25799999999875 333 599998743332 33 35567788888888876 888887
Q ss_pred ecc
Q 043063 241 CEP 243 (301)
Q Consensus 241 ~e~ 243 (301)
+..
T Consensus 342 it~ 344 (384)
T 3ldg_A 342 LTN 344 (384)
T ss_dssp EES
T ss_pred EEC
Confidence 765
No 275
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=96.46 E-value=0.0025 Score=57.59 Aligned_cols=69 Identities=13% Similarity=0.009 Sum_probs=45.3
Q ss_pred eeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc-ccEeeHhhhhcc-CC-hHHHHHHHHHHHHhCCC--CCEEEE
Q 043063 175 FDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA-ADAIFMKWVLTT-WT-DDECKLIMENCYKAIPA--GGKLIA 240 (301)
Q Consensus 175 ~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~-~~-d~~~~~iL~~~~~aL~p--gg~lli 240 (301)
+|. |.+++.|++ .++|+|..+|+++. .+. .|+|++.--.+. +. .++...+.+.+.+.|++ |+++.|
T Consensus 263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 342 (385)
T 3ldu_A 263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYL 342 (385)
T ss_dssp EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 465 666666553 24799999999875 333 599998544332 22 34566777777777766 888777
Q ss_pred ecc
Q 043063 241 CEP 243 (301)
Q Consensus 241 ~e~ 243 (301)
+..
T Consensus 343 it~ 345 (385)
T 3ldu_A 343 ITS 345 (385)
T ss_dssp EES
T ss_pred EEC
Confidence 754
No 276
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=96.44 E-value=0.015 Score=51.40 Aligned_cols=133 Identities=15% Similarity=0.135 Sum_probs=87.2
Q ss_pred CcceEEeecCCc---------e-----ee--eehhHHHhhCC-----------------------------CCCceeEEe
Q 043063 160 GVKRLVDVGGSA---------G-----IN--FDLPEVVAEAP-----------------------------SIPGVTHIG 194 (301)
Q Consensus 160 ~~~~vlDvGgG~---------g-----~~--~Dlp~v~~~a~-----------------------------~~~ri~~~~ 194 (301)
+...||-+|||. + .. +|.|++++.=+ ..++..+++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 467899999998 1 23 36798765310 146889999
Q ss_pred CCCCcc--CC----------c-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHH-hhhhhh
Q 043063 195 GDMFKS--IP----------A-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQR-TRALLE 260 (301)
Q Consensus 195 gd~~~~--~p----------~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~-~~~~~~ 260 (301)
.|+.+. ++ . .-++++--+|.+++.+++..+|+.+.+.. |+|.+++.|.+.+.++ .+.. ......
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~d~-fg~~M~~~l~~ 247 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNMGDR-FGQIMIENLRR 247 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCTTSH-HHHHHHHHHHT
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCCCCH-HHHHHHHHHHH
Confidence 999762 21 1 14888888899999999999999999876 4567777898865431 0100 000001
Q ss_pred ccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEc
Q 043063 261 GDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV 298 (301)
Q Consensus 261 ~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~ 298 (301)
....+.+ . ....|.++..+.|.++||+.+++.++
T Consensus 248 ~g~pl~s--l--~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 248 RQCDLAG--V--ETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp TTCCCTT--G--GGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred hCCCCcc--c--ccCCCHHHHHHHHHHcCCCcceeecH
Confidence 1111111 0 12247899999999999999887765
No 277
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=96.40 E-value=0.0011 Score=61.22 Aligned_cols=93 Identities=17% Similarity=0.168 Sum_probs=61.1
Q ss_pred HhhhcCCCCCCcceEEeecCCcee----------------------------eeeh-hHHHhhCCC------CC--ceeE
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAGI----------------------------NFDL-PEVVAEAPS------IP--GVTH 192 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g~----------------------------~~Dl-p~v~~~a~~------~~--ri~~ 192 (301)
.+++... .....+|+|.|||+|. ++|+ |.+++.|+. .. ++.+
T Consensus 162 ~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i 240 (445)
T 2okc_A 162 AMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPI 240 (445)
T ss_dssp HHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSE
T ss_pred HHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCE
Confidence 4444443 4456799999999962 3354 445444432 12 6889
Q ss_pred EeCCCCcc-CC-cccEeeHhhhhccCChH---------------HHHHHHHHHHHhCCCCCEEEEecc
Q 043063 193 IGGDMFKS-IP-AADAIFMKWVLTTWTDD---------------ECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 193 ~~gd~~~~-~p-~~D~v~~~~vlh~~~d~---------------~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
..+|.+.. .. ..|+|++.--++..... .-..+++++.+.|+|||++.++-+
T Consensus 241 ~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 241 VCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp EECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 99999875 32 35999987655542211 124789999999999999877664
No 278
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=96.38 E-value=0.0029 Score=48.04 Aligned_cols=64 Identities=20% Similarity=0.130 Sum_probs=50.9
Q ss_pred cccccccCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcCcceeccccccC--CCeEecChhchhhhc
Q 043063 9 GGKKGRLANTPLSASQILTRI-LPSGGGDAENLQRILRLLTNYGVFSEHREFGG--ERKYSLTEIGKSLVT 76 (301)
Q Consensus 9 lglf~~L~~g~~t~~ela~~~-~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~s~~l~~ 76 (301)
+-|+..|..|+.+..||++.+ |+ .+..|.+.|+.|...|+|++...... .-.|++|+.++.|..
T Consensus 29 l~IL~~L~~g~~rf~eL~~~l~gI----s~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~ 95 (131)
T 4a5n_A 29 GILFYHMIDGKKRFNEFRRICPSI----TQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEP 95 (131)
T ss_dssp HHHHHHHTTSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHH
T ss_pred HHHHHHHhcCCcCHHHHHHHhccc----CHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHH
Confidence 345566667999999999999 99 79999999999999999998742100 125999999987653
No 279
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=96.38 E-value=0.001 Score=57.32 Aligned_cols=55 Identities=9% Similarity=0.113 Sum_probs=45.5
Q ss_pred cccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 9 GGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 9 lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
+.|++.|.. ++.|+.|||+++|+ ++.-+.|+|+.|+..|+|.++ .+++|++++..
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl----~ksTv~RlL~tL~~~G~v~~~----~~~~Y~LG~~~ 89 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDL----PKSSAHGLLAVMTELDLLARS----ADGTLRIGPHS 89 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTC----C--CHHHHHHHHHHTTSEEEC----TTSEEEECTHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC----CCCcEEehHHH
Confidence 456777763 57999999999999 788999999999999999998 35789999854
No 280
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=96.35 E-value=0.0016 Score=55.55 Aligned_cols=57 Identities=14% Similarity=0.106 Sum_probs=48.4
Q ss_pred cccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063 9 GGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK 72 (301)
Q Consensus 9 lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~ 72 (301)
+.|++.|.. ++.|+.|||+++|+ ++.-+.|+|+.|+..|++.+++ ..++|++++..-
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl----~ksT~~RlL~tL~~~G~v~~~~---~~~~Y~lG~~~~ 67 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGM----NKATVYRLMSELQEAGFVEQVE---GARSYRLGPQVL 67 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEECS---SSSEEEECTTHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC---CCCcEEcCHHHH
Confidence 457788874 67999999999999 7999999999999999999983 237999998543
No 281
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=96.34 E-value=0.0011 Score=48.53 Aligned_cols=59 Identities=19% Similarity=0.089 Sum_probs=47.3
Q ss_pred cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063 7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI 70 (301)
Q Consensus 7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 70 (301)
.++.|+..|..++.|+.+||+.+|+ ++..+.+.|+.|...|+|...+.+ ....|++++.
T Consensus 26 ~r~~IL~~L~~~~~s~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~~~g-r~~~y~l~~~ 84 (108)
T 2kko_A 26 RRLQILDLLAQGERAVEAIATATGM----NLTTASANLQALKSGGLVEARREG-TRQYYRIAGE 84 (108)
T ss_dssp TTHHHHHHHTTCCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEEET-TEEEEEESCH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeC-CEEEEEEChH
Confidence 4567888888889999999999999 789999999999999999876411 1224777654
No 282
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=96.27 E-value=0.00088 Score=45.90 Aligned_cols=56 Identities=13% Similarity=0.192 Sum_probs=45.1
Q ss_pred ccccccccCC-C---CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063 8 DGGKKGRLAN-T---PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE 69 (301)
Q Consensus 8 ~lglf~~L~~-g---~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 69 (301)
+..|++.|.. + +.|+.|||+++|+ +...+++.|+.|...|+|...+ +.++.|..++
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgv----s~~tV~~~L~~L~~~G~I~~~g--~~~~~W~i~~ 75 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA--GTPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHHTSEEEEC--SSSCEEEECC
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC--CCCCceEecC
Confidence 3456666764 5 7899999999999 7889999999999999998863 1356888765
No 283
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=96.27 E-value=0.001 Score=59.86 Aligned_cols=75 Identities=16% Similarity=0.108 Sum_probs=50.6
Q ss_pred cceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccC---C---------------
Q 043063 161 VKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSI---P--------------- 202 (301)
Q Consensus 161 ~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~---p--------------- 202 (301)
..+|||+|||+| +.+|. |.+++.|++ .++++|+.+|..+.. +
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~ 293 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 293 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGG
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccccc
Confidence 367999999996 46787 777776653 258999999987532 1
Q ss_pred -cccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 203 -AADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 203 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
..|+|++. -|.. .+.+++.+.|+++|+++.+.+
T Consensus 294 ~~fD~Vv~d-----PPr~---g~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 294 YQCETIFVD-----PPRS---GLDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp CCEEEEEEC-----CCTT---CCCHHHHHHHTTSSEEEEEES
T ss_pred CCCCEEEEC-----cCcc---ccHHHHHHHHhCCCEEEEEEC
Confidence 24888642 2221 334555666778998887765
No 284
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=96.25 E-value=0.0021 Score=54.76 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=37.1
Q ss_pred HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc
Q 043063 150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS 200 (301)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~ 200 (301)
.+++..+ ..+..+|||||||+| +.+|. +.+++.+++ .++++++.+|+.+.
T Consensus 20 ~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~ 87 (255)
T 3tqs_A 20 KIVSAIH-PQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQF 87 (255)
T ss_dssp HHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTC
T ss_pred HHHHhcC-CCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhC
Confidence 3444443 566789999999996 56787 777766543 47999999999874
No 285
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=96.19 E-value=0.0026 Score=43.94 Aligned_cols=61 Identities=11% Similarity=0.171 Sum_probs=45.3
Q ss_pred ccccccccCC-C---CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhh
Q 043063 8 DGGKKGRLAN-T---PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSL 74 (301)
Q Consensus 8 ~lglf~~L~~-g---~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l 74 (301)
+..|++.|.+ + ++|+.+||+++|+ ....+++.|+.|...|+|+..+ +.++.|.+.+....+
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgv----sr~tV~~~L~~Le~~G~I~~~g--~~~~~W~i~~~~~~~ 76 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA--GTPPLWKIAVSTQAW 76 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEES--SSSCEEEEC------
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC--CCCCeeEEeCcHHhc
Confidence 4456777764 5 7899999999999 7889999999999999998763 135788888765433
No 286
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.18 E-value=0.0011 Score=49.45 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=49.2
Q ss_pred cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
.++.|+..|..||.|+.+||+.+|+ .+..+.+.|+.|...|+|...+.+ ..-.|++++.+
T Consensus 19 ~R~~Il~~L~~~~~~~~eLa~~l~i----s~~tvs~hL~~L~~~GlV~~~~~g-r~~~y~l~~~~ 78 (118)
T 3f6o_A 19 TRRAVLGRLSRGPATVSELAKPFDM----ALPSFMKHIHFLEDSGWIRTHKQG-RVRTCAIEKEP 78 (118)
T ss_dssp HHHHHHHHHHTCCEEHHHHHTTCCS----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECSHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEEecC-CEEEEEECHHH
Confidence 4677888888899999999999999 788999999999999999876421 22358888754
No 287
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=96.13 E-value=0.0067 Score=51.70 Aligned_cols=37 Identities=11% Similarity=0.201 Sum_probs=26.6
Q ss_pred ccEeeHhhhhc---cCChH-HHHHHHHHHHHhCCCC-CEEEE
Q 043063 204 ADAIFMKWVLT---TWTDD-ECKLIMENCYKAIPAG-GKLIA 240 (301)
Q Consensus 204 ~D~v~~~~vlh---~~~d~-~~~~iL~~~~~aL~pg-g~lli 240 (301)
.|+|++-...+ .+-|. ....+|+.+.+.|+|| |.+++
T Consensus 141 ~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~ 182 (277)
T 3evf_A 141 CDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV 182 (277)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred ccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 59999876554 12232 2345789999999999 98887
No 288
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=96.06 E-value=0.0047 Score=52.53 Aligned_cols=58 Identities=17% Similarity=0.083 Sum_probs=49.8
Q ss_pred cccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063 9 GGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV 75 (301)
Q Consensus 9 lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 75 (301)
+.|++.|.. ++.|+.|||+++|+ ++.-+.|+|+.|+..|++.++ ++.|++++....|.
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl----~~stv~r~l~~L~~~G~v~~~-----~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGL----SRPAVRRILLTLQKLGYVAGS-----GGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTEEEECGGGHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC-----CCEEEEcHHHHHHH
Confidence 457788864 68999999999999 789999999999999999987 58999998765454
No 289
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.06 E-value=0.0013 Score=48.44 Aligned_cols=61 Identities=18% Similarity=0.134 Sum_probs=48.4
Q ss_pred cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063 7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK 72 (301)
Q Consensus 7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~ 72 (301)
.++.|+..|..++.|..+||+.+|+ ++..+.+.|+.|...|++.+.+.+ ....|.+|+.+.
T Consensus 22 ~r~~IL~~L~~~~~~~~ela~~l~i----s~~tv~~~l~~L~~~gli~~~~~g-r~~~y~l~~~~~ 82 (114)
T 2oqg_A 22 TRWEILTELGRADQSASSLATRLPV----SRQAIAKHLNALQACGLVESVKVG-REIRYRALGAEL 82 (114)
T ss_dssp HHHHHHHHHHHSCBCHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECSHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeEEecC-CEEEEEechHHH
Confidence 4566788885589999999999999 788999999999999999876311 122488887653
No 290
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=96.02 E-value=0.003 Score=48.94 Aligned_cols=63 Identities=17% Similarity=0.098 Sum_probs=49.1
Q ss_pred cccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccccc-CCCeEecChhchhhh
Q 043063 9 GGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFG-GERKYSLTEIGKSLV 75 (301)
Q Consensus 9 lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~-~~~~y~~t~~s~~l~ 75 (301)
+-|+..|..|+.+..||++.+|+ .+..+.+.|+.|...|+|++..... ..-.|++|+.++.+.
T Consensus 27 l~IL~~L~~g~~~~~eLa~~lgi----s~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 27 MLIVRDAFEGLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALF 90 (146)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTH
T ss_pred HHHHHHHHhCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHH
Confidence 33555665689999999999999 7999999999999999999874210 013699999876554
No 291
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=96.01 E-value=0.0046 Score=52.72 Aligned_cols=55 Identities=11% Similarity=0.074 Sum_probs=47.2
Q ss_pred cccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 9 GGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 9 lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
+.|++.|.. ++.|+.|||+++|+ ++.-+.|+|+.|...|++.+++ +++|++++..
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl----~kstv~r~l~tL~~~G~v~~~~----~~~Y~lg~~~ 82 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKL----PKTTVVRLVATMCARSVLTSRA----DGSYSLGPEM 82 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEECT----TSCEEECHHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEECC----CCeEEecHHH
Confidence 457788863 68999999999999 7899999999999999999983 4489998854
No 292
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=96.00 E-value=0.0018 Score=48.20 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=47.3
Q ss_pred cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063 7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI 70 (301)
Q Consensus 7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 70 (301)
.++.|+..|..++.|+.+||+.+|+ ++..+.+.|+.|...|++...+.+ ..-.|++++.
T Consensus 22 ~r~~IL~~L~~~~~~~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~~~g-r~~~y~l~~~ 80 (118)
T 2jsc_A 22 TRCRILVALLDGVCYPGQLAAHLGL----TRSNVSNHLSCLRGCGLVVATYEG-RQVRYALADS 80 (118)
T ss_dssp HHHHHHHHHHTTCCSTTTHHHHHSS----CHHHHHHHHHHHTTTTSEEEEECS-SSEEEEESSH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEEC-CEEEEEEChH
Confidence 3567888887789999999999999 789999999999999999876311 1225777763
No 293
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=95.96 E-value=0.0027 Score=43.74 Aligned_cols=61 Identities=8% Similarity=0.005 Sum_probs=48.4
Q ss_pred cccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 5 ECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 5 ~a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
+.....|++.|...+.|+.+||+++|+ .+..+++.|+.|...|+|.... +.+-.|+++..+
T Consensus 16 ~~~~~~IL~lL~~~g~sa~eLAk~Lgi----Sk~aVr~~L~~Le~eG~I~~~~--~~PP~W~~~~~~ 76 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEGATAAQLTRQLNM----EKREVNKALYDLQRSAMVYSSD--DIPPRWFMTTEA 76 (82)
T ss_dssp HHHHHHHHHHHSSSTEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEECS--SSSCEEESCC--
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC--CCCCcceeccCc
Confidence 345667888888755999999999999 7899999999999999999873 234578887654
No 294
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=95.93 E-value=0.0019 Score=49.09 Aligned_cols=63 Identities=17% Similarity=0.086 Sum_probs=49.7
Q ss_pred cccccccCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhh
Q 043063 9 GGKKGRLANTPLSASQILTRI-LPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLV 75 (301)
Q Consensus 9 lglf~~L~~g~~t~~ela~~~-~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~ 75 (301)
+-|+..|..|+.+..+|++.+ |+ ++..+.+.|+.|...|+|.+..... ..-.|.+|+.++.+.
T Consensus 38 l~IL~~L~~g~~~~~eLa~~l~gi----s~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 38 VLILVALRDGTHRFSDLRRXMGGV----SEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVS 103 (131)
T ss_dssp HHHHHHGGGCCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHH
Confidence 345666767899999999999 79 7999999999999999999874210 112699999887654
No 295
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=95.91 E-value=0.0022 Score=46.67 Aligned_cols=59 Identities=20% Similarity=0.190 Sum_probs=46.5
Q ss_pred cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063 7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI 70 (301)
Q Consensus 7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 70 (301)
.++.|+..|..++.|+.+||+.+|+ ++..+.+.|+.|...|++...+.+ ..-.|++++.
T Consensus 27 ~r~~IL~~L~~~~~~~~ela~~l~i----s~stvs~~L~~L~~~Glv~~~~~g-r~~~y~l~~~ 85 (106)
T 1r1u_A 27 NRIRIMELLSVSEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAKRQG-QSMIYSLDDI 85 (106)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEESSH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeC-CEEEEEEChH
Confidence 4567788887788999999999999 788999999999999999876411 1124666653
No 296
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=95.87 E-value=0.0041 Score=46.58 Aligned_cols=58 Identities=19% Similarity=0.138 Sum_probs=46.8
Q ss_pred ccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063 8 DGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI 70 (301)
Q Consensus 8 ~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 70 (301)
++.|+..|.+++.++.+||+.+|+ .+..+.+.|+.|...|++...+.+ ..-.|++++.
T Consensus 48 rl~IL~~L~~~~~s~~ela~~lgi----s~stvs~~L~~Le~~Glv~~~~~g-r~~~y~l~~~ 105 (122)
T 1r1t_A 48 RLRLLSLLARSELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYRKQG-RHVYYQLQDH 105 (122)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEESSH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeC-CEEEEEEChH
Confidence 567888888889999999999999 788999999999999999876411 1124666654
No 297
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=95.87 E-value=0.0027 Score=46.31 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=49.2
Q ss_pred cccccccCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhh
Q 043063 9 GGKKGRLANTPLSASQILTRI-LPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLV 75 (301)
Q Consensus 9 lglf~~L~~g~~t~~ela~~~-~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~ 75 (301)
+.|+..|..|+.+..||++.+ |+ ++..+.+.|+.|...|+|++..... ..-.|.+|+.++.+.
T Consensus 28 ~~IL~~L~~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 28 LLIIFQINRRIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVL 93 (107)
T ss_dssp HHHHHHHTTSCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTH
T ss_pred HHHHHHHHhCCcCHHHHHHHcccC----CHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHH
Confidence 345666767899999999999 49 7999999999999999999874210 012599999886554
No 298
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=95.87 E-value=0.0041 Score=53.15 Aligned_cols=54 Identities=13% Similarity=0.036 Sum_probs=47.4
Q ss_pred cccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 9 GGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 9 lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
+.|++.|.. ++.|+.|||+++|+ ++.-+.|+|+.|+..|++.++ +++|++++..
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl----~~stv~r~l~tL~~~G~v~~~-----~~~Y~Lg~~~ 79 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDL----TRATARRFLLTLVELGYVATD-----GSAFWLTPRV 79 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEES-----SSEEEECGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec-----CCEEEEcHHH
Confidence 457788863 68999999999999 789999999999999999987 5899998854
No 299
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=95.86 E-value=0.0036 Score=44.55 Aligned_cols=60 Identities=15% Similarity=0.080 Sum_probs=47.2
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
.++.|+..|.. ++.|..+||+.+|+ ++..+.+.|+.|...|++.+.+.+ ....|.+|+.+
T Consensus 25 ~~~~il~~l~~~~~~s~~ela~~l~i----s~~tvs~~l~~L~~~glv~~~~~~-r~~~y~l~~~~ 85 (99)
T 3cuo_A 25 KRLLILCMLSGSPGTSAGELTRITGL----SASATSQHLARMRDEGLIDSQRDA-QRILYSIKNEA 85 (99)
T ss_dssp HHHHHHHHHTTCCSEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECS-SCEEEEECCHH
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecC-CEEEEEEChHH
Confidence 45567788876 48999999999999 788999999999999999987411 12347777654
No 300
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=95.81 E-value=0.003 Score=47.27 Aligned_cols=58 Identities=22% Similarity=0.148 Sum_probs=46.0
Q ss_pred ccccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063 8 DGGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI 70 (301)
Q Consensus 8 ~lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 70 (301)
++.|+..|. .++.|+.+||+.+|+ .+..+.+.|+.|...|++...+.+ ..-.|++++.
T Consensus 44 rl~IL~~L~~~~~~s~~eLa~~l~i----s~stvs~~L~~L~~~Glv~~~~~g-r~~~y~l~~~ 102 (122)
T 1u2w_A 44 RAKITYALCQDEELCVCDIANILGV----TIANASHHLRTLYKQGVVNFRKEG-KLALYSLGDE 102 (122)
T ss_dssp HHHHHHHHHHSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC-----CCEEEESCH
T ss_pred HHHHHHHHHHCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEEC-CEEEEEECHH
Confidence 567888887 689999999999999 788999999999999999876311 1225777764
No 301
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=95.80 E-value=0.0023 Score=49.90 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=50.0
Q ss_pred cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063 7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK 72 (301)
Q Consensus 7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~ 72 (301)
.++.|+..|..++.|+.+||+.+|+ .+..+.+.|+.|...|+|...+.+ ..-.|++|+.+.
T Consensus 59 ~R~~IL~~L~~~~~t~~eLa~~lgl----s~stvs~hL~~L~~aGlV~~~~~G-r~~~y~lt~~~~ 119 (151)
T 3f6v_A 59 TRRRLVQLLTSGEQTVNNLAAHFPA----SRSAISQHLRVLTEAGLVTPRKDG-RFRYYRLDPQGL 119 (151)
T ss_dssp HHHHHHHHGGGCCEEHHHHHTTSSS----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecC-CEEEEEEChHHH
Confidence 3677888898899999999999999 788999999999999999977411 123588887653
No 302
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=95.75 E-value=0.0033 Score=52.96 Aligned_cols=59 Identities=17% Similarity=0.083 Sum_probs=48.1
Q ss_pred cccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhh
Q 043063 9 GGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSL 74 (301)
Q Consensus 9 lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l 74 (301)
+.|++.|.. ++.|+.|||+++|+ ++..+.|+|+.|+..|++.+++ ..++|++++....|
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~~---~~~~Y~lg~~~~~l 69 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGL----PRSTVQRIINALEEEFLVEALG---PAGGFRLGPALGQL 69 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTS----CHHHHHHHHHHHHTTTSEEECG---GGCEEEECSHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC---CCCeEEECHHHHHH
Confidence 346677754 47999999999999 7999999999999999999873 23789999865433
No 303
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=95.72 E-value=0.0043 Score=42.82 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=41.9
Q ss_pred cccccccccccCC---CCCCHHHHHHHh-----CCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 5 ECRDGGKKGRLAN---TPLSASQILTRI-----LPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 5 ~a~~lglf~~L~~---g~~t~~ela~~~-----~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
|.-+..|++.|.. ++.|++||++.+ ++ +..-+.|.|+.|+..|+|.+..
T Consensus 16 t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i----s~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 16 TLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI----GLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp CHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCeEEEe
Confidence 4445678888874 589999999999 88 7889999999999999999874
No 304
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=95.63 E-value=0.0025 Score=46.91 Aligned_cols=63 Identities=16% Similarity=0.111 Sum_probs=49.4
Q ss_pred cccccccCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhh
Q 043063 9 GGKKGRLANTPLSASQILTRI-LPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLV 75 (301)
Q Consensus 9 lglf~~L~~g~~t~~ela~~~-~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~ 75 (301)
+.|+..|..++.+..+||+.+ ++ ++..+.+.|+.|...|+|.+..... ..-.|.+|+.++.+.
T Consensus 25 ~~IL~~L~~~~~~~~eLa~~l~~i----s~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 25 LSLMDELFQGTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALY 90 (112)
T ss_dssp HHHHHHHHHSCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHH
Confidence 345566666899999999999 99 7999999999999999999874210 112499999887654
No 305
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=95.50 E-value=0.0047 Score=52.14 Aligned_cols=63 Identities=14% Similarity=0.266 Sum_probs=52.0
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhc
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVT 76 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~ 76 (301)
..+.|+..|.. ++.|..+||+.+|+ ++..+.|.|+.|...|++++.+ ....|++|+.+..+..
T Consensus 153 ~~~~IL~~L~~~~~~s~~eLA~~lgl----sksTv~r~L~~Le~~GlV~r~~---r~~~~~LT~~G~~l~~ 216 (244)
T 2wte_A 153 EEMKLLNVLYETKGTGITELAKMLDK----SEKTLINKIAELKKFGILTQKG---KDRKVELNELGLNVIK 216 (244)
T ss_dssp HHHHHHHHHHHHTCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET---TTTEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC---CccEEEECHHHHHHHH
Confidence 34556677653 78999999999999 7999999999999999999873 3568999999876643
No 306
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=95.47 E-value=0.0048 Score=42.47 Aligned_cols=56 Identities=14% Similarity=0.038 Sum_probs=42.5
Q ss_pred ccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc-cCCCeEecCh
Q 043063 10 GKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF-GGERKYSLTE 69 (301)
Q Consensus 10 glf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~y~~t~ 69 (301)
.|++.|.. ++.|..|||+.+|+ .+..+++.|+.|...|++.+.... +....|.++.
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgv----s~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~ 61 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAV----TDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKG 61 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESS
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEECh
Confidence 46666654 78999999999999 788999999999999999854211 1233566554
No 307
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=95.46 E-value=0.0052 Score=51.96 Aligned_cols=55 Identities=13% Similarity=0.084 Sum_probs=46.6
Q ss_pred cccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 9 GGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 9 lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
+.|++.|.. ++.|+.|||+++|+ ++..+.|+|+.|+..|++.++ ..+.|++++..
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~----~~~~Y~lg~~~ 67 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK----KDKRYVPGYKL 67 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC----TTSCEEECTHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEC----CCCcEEECHHH
Confidence 356677753 47999999999999 789999999999999999987 36789998854
No 308
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=95.45 E-value=0.0062 Score=43.46 Aligned_cols=66 Identities=18% Similarity=0.223 Sum_probs=51.5
Q ss_pred ccccccccccCC-CCCCHHHH----HHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhc
Q 043063 6 CRDGGKKGRLAN-TPLSASQI----LTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVT 76 (301)
Q Consensus 6 a~~lglf~~L~~-g~~t~~el----a~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~ 76 (301)
..++.++..|.. ++.|..+| |+.+++ ++..+.++|+.|...|++.+.... ....|.+|+.++.+..
T Consensus 8 ~~q~~iL~~l~~~~~~~~~el~~~la~~l~i----s~~tvs~~l~~Le~~gli~r~~~~-r~~~~~LT~~G~~~~~ 78 (99)
T 1tbx_A 8 YPEAIVLAYLYDNEGIATYDLYKKVNAEFPM----STATFYDAKKFLIQEGFVKERQER-GEKRLYLTEKGKLFAI 78 (99)
T ss_dssp CHHHHHHHHHTTCTTCBHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCEEEEecC-CceEEEECHHHHHHHH
Confidence 345567777765 78999999 899999 799999999999999999986311 1235888988876553
No 309
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=95.40 E-value=0.018 Score=43.93 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV 75 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 75 (301)
++.|..+||+.+++ ++..+.+.|+.|...|+|.+.+ ...|.+|+.+..+.
T Consensus 21 ~~~~~~ela~~l~v----s~~tvs~~l~~Le~~Glv~r~~----~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 21 GYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYEK----YRGLVLTSKGKKIG 70 (142)
T ss_dssp SSCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEET----TTEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEee----CceEEEchhHHHHH
Confidence 78999999999999 7999999999999999999883 57899999886554
No 310
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=95.39 E-value=0.019 Score=50.15 Aligned_cols=87 Identities=13% Similarity=0.122 Sum_probs=52.9
Q ss_pred CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccC---C---cccEee
Q 043063 158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSI---P---AADAIF 208 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~---p---~~D~v~ 208 (301)
..+..+|||+|||+| +.+|. +..++.+++ ..+|+++.+|+.+.. + ..|.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 456789999999995 45687 666655442 257999999987531 1 248888
Q ss_pred H------hhhhcc---------CChHH-------HHHHHHHHHHhCCCCCEEEEecccc
Q 043063 209 M------KWVLTT---------WTDDE-------CKLIMENCYKAIPAGGKLIACEPVL 245 (301)
Q Consensus 209 ~------~~vlh~---------~~d~~-------~~~iL~~~~~aL~pgg~lli~e~~~ 245 (301)
+ ..++.. |+.++ ..++|+++.+.++ ||+|+...+..
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 6 122221 11111 1357888887776 88877665544
No 311
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=95.37 E-value=0.0038 Score=53.82 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=35.2
Q ss_pred hhhcCCCCCCcceEEeecCCce-----------------eeeeh-hHHHhhCCC--CCceeEEeCCCCcc
Q 043063 151 ILDGYDGFKGVKRLVDVGGSAG-----------------INFDL-PEVVAEAPS--IPGVTHIGGDMFKS 200 (301)
Q Consensus 151 ~~~~~~~~~~~~~vlDvGgG~g-----------------~~~Dl-p~v~~~a~~--~~ri~~~~gd~~~~ 200 (301)
+++..+ .....+|||||||+| +++|+ +.+++.+++ .++++++.+|+.+.
T Consensus 34 iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~ 102 (279)
T 3uzu_A 34 IVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTF 102 (279)
T ss_dssp HHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGC
T ss_pred HHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcC
Confidence 444443 556789999999995 23566 667766654 36899999999864
No 312
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=95.35 E-value=0.0084 Score=51.01 Aligned_cols=86 Identities=10% Similarity=0.204 Sum_probs=53.2
Q ss_pred CCCcceEEeecCCce-------------eeeeh-h-------HHHhhCCCC-------CceeEEeCCCCcc---CC---c
Q 043063 158 FKGVKRLVDVGGSAG-------------INFDL-P-------EVVAEAPSI-------PGVTHIGGDMFKS---IP---A 203 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g-------------~~~Dl-p-------~v~~~a~~~-------~ri~~~~gd~~~~---~p---~ 203 (301)
.....+|||+|||+| +.+|. | ..++.+++. +||+++.+|+.+. ++ .
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~ 160 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG 160 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred cCCcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence 334578999999996 56787 6 666655432 5799999998763 33 3
Q ss_pred -ccEeeHhhhhccCC------------------hHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063 204 -ADAIFMKWVLTTWT------------------DDECKLIMENCYKAIPAGGKLIACEPVL 245 (301)
Q Consensus 204 -~D~v~~~~vlh~~~------------------d~~~~~iL~~~~~aL~pgg~lli~e~~~ 245 (301)
.|+|++.-.+++-. +.+...+++.+.+..+ .+++|..+..
T Consensus 161 ~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~--~~vvvk~p~~ 219 (258)
T 2r6z_A 161 KPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAK--KRVVVKRPRL 219 (258)
T ss_dssp CCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCS--SEEEEEEETT
T ss_pred CccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcC--cEEEEEcCCC
Confidence 59998854443211 1233455666666542 3677766544
No 313
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=95.20 E-value=0.02 Score=43.00 Aligned_cols=47 Identities=23% Similarity=0.257 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI 70 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 70 (301)
++.|..+||+.+|+ ++..++++|+.|...|++...+ |..|.|+++.-
T Consensus 25 ~~~s~~ela~~~~i----~~~~v~~il~~L~~~Glv~~~~--g~~ggy~L~~~ 71 (129)
T 2y75_A 25 GPTSLKSIAQTNNL----SEHYLEQLVSPLRNAGLVKSIR--GAYGGYVLGSE 71 (129)
T ss_dssp CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEC------CCEEESSC
T ss_pred CcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEecC--CCCCceEeCCC
Confidence 57899999999999 7999999999999999998763 12467888764
No 314
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=95.14 E-value=0.0038 Score=44.44 Aligned_cols=63 Identities=19% Similarity=0.135 Sum_probs=48.9
Q ss_pred cccccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchh
Q 043063 7 RDGGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKS 73 (301)
Q Consensus 7 ~~lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~ 73 (301)
.++.|+..|. .++.|..+||+.+|+ ++..+.+.|+.|...|++.+.... +....|.+|+.+..
T Consensus 17 ~~~~iL~~L~~~~~~~~~ela~~l~i----s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~ 82 (100)
T 1ub9_A 17 VRLGIMIFLLPRRKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGME 82 (100)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHH
T ss_pred HHHHHHHHHHhcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHH
Confidence 4566788785 478999999999999 788999999999999999965210 01235888887753
No 315
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=95.06 E-value=0.025 Score=44.32 Aligned_cols=47 Identities=23% Similarity=0.317 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI 70 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 70 (301)
+|.|.++||+..++ ++..++++|..|...|+|...+ |.+|.|+++.-
T Consensus 43 ~~~s~~eIA~~~~i----~~~~l~kil~~L~~aGlv~s~r--G~~GGy~Lar~ 89 (159)
T 3lwf_A 43 GPISLRSIAQDKNL----SEHYLEQLIGPLRNAGIVKSIR--GAHGGYVLNGD 89 (159)
T ss_dssp CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC--STTCEEEECSC
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEec--CCCCceEecCC
Confidence 57999999999999 8999999999999999999774 23567998753
No 316
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=94.98 E-value=0.0063 Score=42.51 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=38.1
Q ss_pred cccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 11 KKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 11 lf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
|.+.|.. |.+|++|||+.+++ .+.-+++.|+.|...|+|.+.
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~V----S~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQT----PQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTC----CHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 5666764 89999999999999 799999999999999999988
No 317
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=94.94 E-value=0.0071 Score=41.38 Aligned_cols=42 Identities=19% Similarity=0.170 Sum_probs=38.0
Q ss_pred cccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 11 KKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 11 lf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
|.+.|.. |.++++|||+.+++ .+.-+++-|..|...|++.+.
T Consensus 7 Il~~L~~~g~vsv~eLa~~l~V----S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 5566764 89999999999999 799999999999999999987
No 318
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=94.83 E-value=0.03 Score=42.43 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063 17 NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV 75 (301)
Q Consensus 17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 75 (301)
.++.|..+||+.+++ ++..+.+.|+.|...|+|.+. ...|.+|+.+..+.
T Consensus 29 ~~~~s~~ela~~l~i----s~~tv~~~l~~Le~~Gli~r~-----~~~~~Lt~~g~~~~ 78 (139)
T 2x4h_A 29 GEGAKINRIAKDLKI----APSSVFEEVSHLEEKGLVKKK-----EDGVWITNNGTRSI 78 (139)
T ss_dssp TSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEec-----CCeEEEChhHHHHH
Confidence 368899999999999 789999999999999999988 36899999886543
No 319
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=94.75 E-value=0.024 Score=43.81 Aligned_cols=47 Identities=13% Similarity=0.156 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
++.|.++||+.+++ ++..++++|..|...|+|...+ | .|.|+++.-.
T Consensus 29 ~~~~~~~iA~~~~i----~~~~l~kil~~L~~~Glv~s~r--G-~GGy~L~~~p 75 (149)
T 1ylf_A 29 SLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNR--G-PGGAGLLKDL 75 (149)
T ss_dssp GGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC------CCEEESSCG
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEcc--C-CCceEeCCCh
Confidence 57999999999999 8999999999999999998764 2 5678887653
No 320
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=94.75 E-value=0.03 Score=43.03 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
++.|.++||+.+++ ++..++++|..|...|+|...+ |.+|.|+++.-.
T Consensus 27 ~~~s~~~IA~~~~i----~~~~l~kil~~L~~aGlv~s~r--G~~GGy~Lar~p 74 (143)
T 3t8r_A 27 GCISLKSIAEENNL----SDLYLEQLVGPLRNAGLIRSVR--GAKGGYQLRVPA 74 (143)
T ss_dssp CCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECS--SSSSEEEESSCG
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCEEEecC--CCCCCeeecCCc
Confidence 47899999999999 8999999999999999998663 235789987643
No 321
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=94.75 E-value=0.016 Score=49.54 Aligned_cols=95 Identities=12% Similarity=0.076 Sum_probs=53.7
Q ss_pred hHHhhhcCCCCCCcceEEeecCCce---------------eeeehh-HHHhhCCC----C-CceeEEeC-CCCccCCc-c
Q 043063 148 MTSILDGYDGFKGVKRLVDVGGSAG---------------INFDLP-EVVAEAPS----I-PGVTHIGG-DMFKSIPA-A 204 (301)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dlp-~v~~~a~~----~-~ri~~~~g-d~~~~~p~-~ 204 (301)
..++.+.+ .+....+|||||||.| +.+|+- .....+.. . +-+.+... |++...+. +
T Consensus 79 L~ei~eK~-~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~ 157 (282)
T 3gcz_A 79 LRWMEERG-YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPG 157 (282)
T ss_dssp HHHHHHTT-SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCC
T ss_pred HHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCc
Confidence 34555566 3777789999999995 223441 11111111 1 22344443 44322223 5
Q ss_pred cEeeHhhhhc----cCChHHHHHHHHHHHHhCCCC--CEEEEecc
Q 043063 205 DAIFMKWVLT----TWTDDECKLIMENCYKAIPAG--GKLIACEP 243 (301)
Q Consensus 205 D~v~~~~vlh----~~~d~~~~~iL~~~~~aL~pg--g~lli~e~ 243 (301)
|+|++-...+ ..+......+|+-+.+.|+|| |.+++-=+
T Consensus 158 DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF 202 (282)
T 3gcz_A 158 DTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVL 202 (282)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred CEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence 9998876655 111222346788889999999 98877433
No 322
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=94.68 E-value=0.019 Score=43.69 Aligned_cols=66 Identities=14% Similarity=0.237 Sum_probs=48.2
Q ss_pred ccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063 6 CRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV 75 (301)
Q Consensus 6 a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~ 75 (301)
..++.|+..|..++.|..+||+.+++ ++..+.+.++.|...|+|.+.+.. +..-.|.+|+.+..+.
T Consensus 38 ~~~~~iL~~l~~~~~t~~eLa~~l~~----s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~ 105 (146)
T 3tgn_A 38 NTQEHILMLLSEESLTNSELARRLNV----SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIA 105 (146)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHH
Confidence 34566777787755999999999999 799999999999999999986421 0112477787776544
No 323
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=94.68 E-value=0.05 Score=45.80 Aligned_cols=92 Identities=14% Similarity=0.092 Sum_probs=52.3
Q ss_pred HHhhhcCCCCCCcceEEeecCCce-------------------eeeehhHHHhhCCCCCce---eEEeC-CCCccCCc-c
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG-------------------INFDLPEVVAEAPSIPGV---THIGG-DMFKSIPA-A 204 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------------~~~Dlp~v~~~a~~~~ri---~~~~g-d~~~~~p~-~ 204 (301)
.++-+.+ -+++..+|||+||+.| +..|+ +..+.......+ +|..| ||++.-+. .
T Consensus 63 ~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~~ 140 (269)
T 2px2_A 63 RWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLMQSYGWNIVTMKSGVDVFYKPSEIS 140 (269)
T ss_dssp HHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCCCSTTGGGEEEECSCCGGGSCCCCC
T ss_pred HHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcccCCCceEEEeeccCCccCCCCCCC
Confidence 3444444 3788899999999995 11232 111111111344 55557 99875443 5
Q ss_pred cEeeHhhhhccCC----hHH-HHHHHHHHHHhCCCCC-EEEEecc
Q 043063 205 DAIFMKWVLTTWT----DDE-CKLIMENCYKAIPAGG-KLIACEP 243 (301)
Q Consensus 205 D~v~~~~vlh~~~----d~~-~~~iL~~~~~aL~pgg-~lli~e~ 243 (301)
|+|++=..- +-+ |.. ...+|.-+.+.|+||| .+++-=+
T Consensus 141 DvVLSDMAP-nSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVF 184 (269)
T 2px2_A 141 DTLLCDIGE-SSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKIL 184 (269)
T ss_dssp SEEEECCCC-CCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred CEEEeCCCC-CCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEEC
Confidence 988764422 211 111 2235667778999999 7777443
No 324
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=94.61 E-value=0.047 Score=38.77 Aligned_cols=54 Identities=31% Similarity=0.348 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV 75 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 75 (301)
++.+..+||+.+++ +...|.|.|..|...|++.+....+..+..++|+.++.+.
T Consensus 35 ~~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~~l 88 (96)
T 2obp_A 35 TPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALA 88 (96)
T ss_dssp CCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHHHH
Confidence 67899999999999 8899999999999999999865432334577888876544
No 325
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=94.61 E-value=0.028 Score=54.79 Aligned_cols=56 Identities=9% Similarity=-0.072 Sum_probs=34.1
Q ss_pred CceeEEeCCCCcc-CC----cccEeeHhhhhcc-CC-hHHHHHHHHHHHHh---CCCCCEEEEecc
Q 043063 188 PGVTHIGGDMFKS-IP----AADAIFMKWVLTT-WT-DDECKLIMENCYKA---IPAGGKLIACEP 243 (301)
Q Consensus 188 ~ri~~~~gd~~~~-~p----~~D~v~~~~vlh~-~~-d~~~~~iL~~~~~a---L~pgg~lli~e~ 243 (301)
++|+|..+|+.+. .| ..|+|++.--... +. +++...+.+.+.+. +.|||++.|+..
T Consensus 283 ~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt~ 348 (703)
T 3v97_A 283 ELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFSA 348 (703)
T ss_dssp GGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 5699999999864 23 3499888733221 22 33445555544444 458998888754
No 326
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=94.57 E-value=0.018 Score=43.83 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=49.1
Q ss_pred cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063 7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV 75 (301)
Q Consensus 7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~ 75 (301)
.++.++..|..++.|..+||+.+++ ++..+.+.++.|...|+|.+.+.. ...-.+.+|+.++.+.
T Consensus 38 ~~~~iL~~l~~~~~~~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 38 LDFLVLRATSDGPKTMAYLANRYFV----TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF 104 (146)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhcCCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHH
Confidence 3445566666678999999999999 799999999999999999976321 0112477888776554
No 327
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=94.55 E-value=0.019 Score=44.32 Aligned_cols=65 Identities=14% Similarity=0.216 Sum_probs=49.7
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV 75 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~ 75 (301)
.++.++..|.. ++.|..+||+.+++ ++..+.++++.|...|+|.+.... +..-.+.+|+.++.+.
T Consensus 44 ~~~~iL~~l~~~~~~t~~ela~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 111 (155)
T 3cdh_A 44 PEWRVLACLVDNDAMMITRLAKLSLM----EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALA 111 (155)
T ss_dssp HHHHHHHHHSSCSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHH
Confidence 34556777765 78999999999999 799999999999999999976311 0112488888886654
No 328
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=94.54 E-value=0.046 Score=42.92 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
++.|.++||+.+++ ++..++++|..|...|+++..+ |.+|.|++..-.
T Consensus 27 ~~~s~~~IA~~~~i----s~~~l~kil~~L~~aGlv~s~r--G~~GGy~Lar~p 74 (162)
T 3k69_A 27 SKVASRELAQSLHL----NPVMIRNILSVLHKHGYLTGTV--GKNGGYQLDLAL 74 (162)
T ss_dssp SCBCHHHHHHHHTS----CGGGTHHHHHHHHHTTSSEEEC--STTCEEECCSCG
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec--CCCCCeEecCCh
Confidence 57899999999999 8999999999999999998763 245679988644
No 329
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=94.51 E-value=0.015 Score=49.18 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=35.6
Q ss_pred HHhhhcCCCCCCcceEEeecCCcee-------------eeeh-hHHHhhCCCC----CceeEEeCCCCcc
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAGI-------------NFDL-PEVVAEAPSI----PGVTHIGGDMFKS 200 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g~-------------~~Dl-p~v~~~a~~~----~ri~~~~gd~~~~ 200 (301)
..+++..+ .....+|||||||+|. .+|+ +.+++.+++. ++++++.+|+.+.
T Consensus 11 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~l~~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~ 79 (252)
T 1qyr_A 11 DSIVSAIN-PQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTF 79 (252)
T ss_dssp HHHHHHHC-CCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGC
T ss_pred HHHHHhcC-CCCcCEEEEECCCCcHHHHhhhCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhC
Confidence 34445553 5667799999999962 4566 6666665542 5899999999863
No 330
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=94.50 E-value=0.01 Score=45.10 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=44.5
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCC---CeEecChhchhhh
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGE---RKYSLTEIGKSLV 75 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~---~~y~~t~~s~~l~ 75 (301)
.++.++..|.. ++.|..+||+.+++ ++..+.++++.|...|+|.+.+.. .+ -.+.+|+.++.+.
T Consensus 38 ~~~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~-~DrR~~~~~LT~~G~~~~ 105 (142)
T 3ech_A 38 PDVHVLKLIDEQRGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRERNP-SDQRSFQLFLTDEGLAIH 105 (142)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHC-------CHHHHHHHHHHHTTSEEC-----------CCEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEeeccCC-CCCCeeeeEECHHHHHHH
Confidence 34556666764 78999999999999 788999999999999999986421 11 1377888776554
No 331
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=94.25 E-value=0.017 Score=43.77 Aligned_cols=65 Identities=23% Similarity=0.218 Sum_probs=49.6
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV 75 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~ 75 (301)
.++.++..|.. ++.|..+||+.+++ ++..+.++++.|...|+|++.+.. ...-.+.+|+.++.+.
T Consensus 37 ~q~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 37 TGYIVLMAIENDEKLNIKKLGERVFL----DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIK 104 (140)
T ss_dssp HHHHHHHHSCTTCEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHH
Confidence 34556667764 78999999999999 899999999999999999987421 0112588888887654
No 332
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=94.24 E-value=0.048 Score=44.84 Aligned_cols=51 Identities=16% Similarity=0.322 Sum_probs=45.6
Q ss_pred CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063 17 NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV 75 (301)
Q Consensus 17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 75 (301)
.++.|..+||+.+++ ++..+.+.|+.|...|++.+.+ ...+.+|+.++.+.
T Consensus 18 ~~~~~~~~lA~~l~v----s~~tvs~~l~~Le~~GlV~r~~----~~~i~LT~~G~~~~ 68 (214)
T 3hrs_A 18 HNKITNKEIAQLMQV----SPPAVTEMMKKLLAEELLIKDK----KAGYLLTDLGLKLV 68 (214)
T ss_dssp CSCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET----TTEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEEec----CCCeEECHHHHHHH
Confidence 378999999999999 7999999999999999999983 57899999987654
No 333
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=94.21 E-value=0.019 Score=44.74 Aligned_cols=64 Identities=17% Similarity=0.139 Sum_probs=49.9
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCC---CeEecChhchhhhc
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGE---RKYSLTEIGKSLVT 76 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~---~~y~~t~~s~~l~~ 76 (301)
++.++..|.. ++.|..+||+.+++ ++..+.++++.|+..|+|.+.+.. .+ -.+.+|+.++.+..
T Consensus 48 q~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~-~DrR~~~l~LT~~G~~~~~ 115 (162)
T 3k0l_A 48 QFTALSVLAAKPNLSNAKLAERSFI----KPQSANKILQDLLANGWIEKAPDP-THGRRILVTVTPSGLDKLN 115 (162)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTS----CGGGHHHHHHHHHHTTSEEEEECC-SSSCCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCeEecCCC-CcCCeeEeEECHhHHHHHH
Confidence 4456666654 78999999999999 899999999999999999987421 11 14888888876553
No 334
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.19 E-value=0.024 Score=43.02 Aligned_cols=65 Identities=14% Similarity=0.082 Sum_probs=49.3
Q ss_pred ccccccccc-C-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063 7 RDGGKKGRL-A-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV 75 (301)
Q Consensus 7 ~~lglf~~L-~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~ 75 (301)
.++.++..| . .++.|..+||+.+++ ++..+.+.++.|...|++.+.+.. ...-.+.+|+.++.+.
T Consensus 38 ~~~~iL~~l~~~~~~~t~~~la~~l~~----s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (146)
T 2fbh_A 38 ARWLVLLHLARHRDSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI 106 (146)
T ss_dssp THHHHHHHHHHCSSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHH
Confidence 445567777 4 478999999999999 799999999999999999986311 0112477787776544
No 335
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=94.14 E-value=0.069 Score=47.58 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=54.4
Q ss_pred CCCcceEEeecCCce-------------eeeehhHHHhhCCCCCceeEEeCCCCccCC-c--ccEeeHhhhhccCChHHH
Q 043063 158 FKGVKRLVDVGGSAG-------------INFDLPEVVAEAPSIPGVTHIGGDMFKSIP-A--ADAIFMKWVLTTWTDDEC 221 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g-------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~~p-~--~D~v~~~~vlh~~~d~~~ 221 (301)
+++..++||+|++.| +.+|.-++-......++|+++.+|.+...| . .|+|++-.+. +...+
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~---~p~~~ 285 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE---KPAKV 285 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS---CHHHH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC---ChHHh
Confidence 456789999999995 556864443333346899999999998744 3 4988876554 34445
Q ss_pred HHHHHHHHHhCCCCCEEEEecc
Q 043063 222 KLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 222 ~~iL~~~~~aL~pgg~lli~e~ 243 (301)
..++.+.......++.++.+..
T Consensus 286 ~~l~~~wl~~~~~~~aI~~lKL 307 (375)
T 4auk_A 286 AALMAQWLVNGWCRETIFNLKL 307 (375)
T ss_dssp HHHHHHHHHTTSCSEEEEEEEC
T ss_pred HHHHHHHHhccccceEEEEEEe
Confidence 5666665555444455555444
No 336
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=94.13 E-value=0.037 Score=39.02 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=41.7
Q ss_pred CCCHHHHHHHhCCCCCCCccc-HHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063 19 PLSASQILTRILPSGGGDAEN-LQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV 75 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~-l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 75 (301)
+.|..+||+.+++ ++.. +.+.++.|...|++..++.+...-.+.+|+.++.+.
T Consensus 30 ~~t~~eLa~~l~i----s~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 30 EPSLAEIVKASGV----SEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLA 83 (95)
T ss_dssp CCCHHHHHHHHCC----CHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHH
T ss_pred CCCHHHHHHHHCC----CchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHH
Confidence 7999999999999 7889 999999999999999442111122478888886654
No 337
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=94.08 E-value=0.017 Score=44.01 Aligned_cols=65 Identities=18% Similarity=0.111 Sum_probs=50.0
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV 75 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~ 75 (301)
.++.++..|.. ++.|..+||+.+++ ++..+.++++.|...|+|.+.... ...-.+.+|+.++.+.
T Consensus 32 ~q~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 32 NLFAVLYTLATEGSRTQKHIGEKWSL----PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHH
Confidence 34556666754 78999999999999 799999999999999999986321 0112588999887654
No 338
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=94.06 E-value=0.039 Score=37.51 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
+|.|+.|||+++|+ .+..+++-|..|...|+|.+..
T Consensus 23 ~~psv~EIa~~lgv----S~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 23 APVKTRDIADAAGL----SIYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEES
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEecC
Confidence 78899999999999 5888999999999999999983
No 339
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=94.01 E-value=0.018 Score=43.45 Aligned_cols=64 Identities=22% Similarity=0.191 Sum_probs=50.6
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~ 75 (301)
++.++..|.. ++.|..+||+.+++ ++..+.+.++.|...|++.+.+.. +..-.|.+|+.++.+.
T Consensus 33 ~~~iL~~l~~~~~~~~~ela~~l~i----s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 33 RYSILQTLLKDAPLHQLALQERLQI----DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 4556677764 78999999999999 799999999999999999987421 0112588999887766
No 340
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=93.99 E-value=0.018 Score=51.50 Aligned_cols=82 Identities=15% Similarity=0.149 Sum_probs=55.5
Q ss_pred CcceEEeecCCce--------------eeeeh-hHHHhhCCC--------------CCceeEEeCCCCccC---C----c
Q 043063 160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS--------------IPGVTHIGGDMFKSI---P----A 203 (301)
Q Consensus 160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~--------------~~ri~~~~gd~~~~~---p----~ 203 (301)
++++||-||||.| +++|+ |.|++.+++ .+|++++.+|.+..+ + .
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~ 284 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE 284 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence 3579999999986 46677 788776542 257999999987542 1 2
Q ss_pred ccEeeHhhhhcc-------CC-hHHHHHHHHHHHHhCCCCCEEEEe
Q 043063 204 ADAIFMKWVLTT-------WT-DDECKLIMENCYKAIPAGGKLIAC 241 (301)
Q Consensus 204 ~D~v~~~~vlh~-------~~-d~~~~~iL~~~~~aL~pgg~lli~ 241 (301)
.|+|+.=-.=.. .. ..-...+++.++++|+|||.++..
T Consensus 285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 488875321100 00 112357899999999999988765
No 341
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=93.99 E-value=0.014 Score=44.81 Aligned_cols=64 Identities=17% Similarity=0.241 Sum_probs=48.8
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~ 75 (301)
++.++..|.. ++.|..+||+.+++ ++..+.+.++.|...|+|.+.... ...-.+.+|+.++.+.
T Consensus 42 ~~~iL~~l~~~~~~t~~ela~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 42 QRAILEGLSLTPGATAPQLGAALQM----KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHH
Confidence 4456666653 78999999999999 799999999999999999986311 0112578888776554
No 342
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=93.96 E-value=0.013 Score=44.18 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=48.3
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~ 75 (301)
++.++..|.. ++.|..+||+.+++ ++..+.+.++.|...|++.+.+.. +..-.|.+|+.++.+.
T Consensus 35 ~~~iL~~l~~~~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 35 QFGVIQVLAKSGKVSMSKLIENMGC----VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHHHHHHHSCSEEHHHHHHHCSS----CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHH
Confidence 4456666653 78999999999999 788999999999999999986311 0112378888876554
No 343
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=93.95 E-value=0.021 Score=43.88 Aligned_cols=64 Identities=16% Similarity=0.185 Sum_probs=46.1
Q ss_pred ccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc-cccCCC---eEecChhchhhh
Q 043063 8 DGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR-EFGGER---KYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~-~~~~~~---~y~~t~~s~~l~ 75 (301)
++.++..|..++.|..+||+.+++ ++..+.++++.|...|++.+.+ +...+. .+.+|+.++.+.
T Consensus 40 q~~iL~~l~~~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 40 QSHVLNMLSIEALTVGQITEKQGV----NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHHHHHHHSCBCHHHHHHHHCS----CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHH
Confidence 445666673389999999999999 7889999999999999999721 000122 367787776554
No 344
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=93.93 E-value=0.016 Score=44.04 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=49.6
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV 75 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~ 75 (301)
.++.++..|.. ++.|..+||+.+++ ++..+.++++.|+..|+|++.+.. ...-.+.+|+.++.+.
T Consensus 38 ~~~~iL~~l~~~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 105 (143)
T 3oop_A 38 EQWSVLEGIEANEPISQKEIALWTKK----DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKET 105 (143)
T ss_dssp HHHHHHHHHHHHSSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHH
Confidence 34556666664 88999999999999 899999999999999999986321 0112488888887654
No 345
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=93.90 E-value=0.016 Score=44.05 Aligned_cols=63 Identities=10% Similarity=0.142 Sum_probs=49.1
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhh
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~ 75 (301)
++.++..|.. ++.|..+||+.+++ ++..+.+.++.|...|+|.+.... .+. .|.+|+.++.+.
T Consensus 35 ~~~iL~~l~~~~~~~~~~la~~l~~----s~~tvs~~l~~L~~~glv~r~~~~-~d~r~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 35 QFDILQKIYFEGPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDP-ADRRAYFLVITRKGEEVI 101 (145)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCC-CCCceEEEEECHHHHHHH
Confidence 4556666654 78999999999999 799999999999999999986311 111 478888887654
No 346
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=93.87 E-value=0.015 Score=43.73 Aligned_cols=63 Identities=14% Similarity=0.100 Sum_probs=48.8
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhh
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~ 75 (301)
++.++..|.. ++.|..+||+.+++ ++..+.++++.|...|++.+.... .+. .+.+|+.++.+.
T Consensus 36 ~~~iL~~l~~~~~~~~~~la~~l~~----~~~tvs~~l~~L~~~gli~r~~~~-~d~R~~~~~lT~~G~~~~ 102 (138)
T 1jgs_A 36 QFKVLCSIRCAACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNP-NDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHHHSSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECT-TCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEecCCc-ccCceeEeEEChhHHHHH
Confidence 4455666654 78999999999999 799999999999999999986311 111 378888876654
No 347
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=93.85 E-value=0.014 Score=43.96 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=48.9
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~ 75 (301)
++.++..|.. ++.|..+||+.+++ ++..+.+.++.|...|++.+.... ...-.|.+|+.++.+.
T Consensus 40 ~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 40 QWAALVRLGETGPCPQNQLGRLTAM----DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHHHHHHHHSSBCHHHHHHHTTC----CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHH
Confidence 4556677754 78999999999999 799999999999999999986311 0011478888876554
No 348
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=93.82 E-value=0.019 Score=44.59 Aligned_cols=64 Identities=19% Similarity=0.138 Sum_probs=46.8
Q ss_pred ccccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063 8 DGGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~ 75 (301)
++.|+..|. .++.|..+||+.+++ ++..+.+.++.|...|+|.+.... +..-.|.+|+.++.+.
T Consensus 51 ~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 51 EWRVITILALYPGSSASEVSDRTAM----DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHH
Confidence 445666665 478999999999999 799999999999999999986311 0113477888776554
No 349
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=93.73 E-value=0.014 Score=44.24 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=48.3
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~ 75 (301)
++.++..|.. ++.|..+||+.+++ ++..+.+.++.|...|++.+.+.. +..-.+.+|+.++.+.
T Consensus 39 ~~~iL~~l~~~~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 105 (142)
T 2bv6_A 39 QFLVLTILWDESPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIR 105 (142)
T ss_dssp HHHHHHHHHHSSEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHH
Confidence 4455666653 78999999999999 788999999999999999987421 0111578888876554
No 350
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=93.70 E-value=0.071 Score=35.77 Aligned_cols=54 Identities=11% Similarity=0.054 Sum_probs=42.5
Q ss_pred cccccccCCCC-CCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063 9 GGKKGRLANTP-LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT 68 (301)
Q Consensus 9 lglf~~L~~g~-~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 68 (301)
++.+..|.++. .|+.+||+++|+ ....+.|.|..|...|.|..... .+-.|..+
T Consensus 18 ~~~i~~L~~~~~~Ta~~IAkkLg~----sK~~vNr~LY~L~kkG~V~~~~~--~PP~W~~~ 72 (75)
T 1sfu_A 18 KKEVLSLNTNDYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMVPS--NPPKWFKN 72 (75)
T ss_dssp HHHHHTSCTTCEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEECC--SSCEEEEC
T ss_pred HHHHHhCCCCcchHHHHHHHHHCC----CHHHHHHHHHHHHHCCCEecCCC--CCCCccCC
Confidence 34566787755 899999999999 78899999999999999987731 23456554
No 351
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=93.69 E-value=0.016 Score=43.63 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=47.9
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhh
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~ 75 (301)
++.++..|.. ++.|..+||+.+++ ++..+.+.++.|...|++.+.+.. .++ .|.+|+.++.+.
T Consensus 31 ~~~iL~~l~~~~~~~~~ela~~l~~----s~~tvs~~l~~L~~~glv~~~~~~-~d~R~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 31 QVACLLRIHREPGIKQDELATFFHV----DKGTIARTLRRLEESGFIEREQDP-ENRRRYILEVTRRGEEII 97 (138)
T ss_dssp HHHHHHHHHHSTTCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEEEEECHHHHHTH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCC-CCceeEEeeECHhHHHHH
Confidence 3445666654 78999999999999 799999999999999999986311 112 377888776554
No 352
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=93.68 E-value=0.019 Score=44.12 Aligned_cols=66 Identities=24% Similarity=0.220 Sum_probs=49.7
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhhcC
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLVTD 77 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~~~ 77 (301)
++.++..|.. ++.|..+||+.+++ ++..+.+.++.|...|+|.+.... ...-.+.+|+.++.+...
T Consensus 49 ~~~iL~~l~~~~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 117 (153)
T 2pex_A 49 QYLVMLVLWETDERSVSEIGERLYL----DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSK 117 (153)
T ss_dssp HHHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGG
T ss_pred HHHHHHHHHhCCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHH
Confidence 4455666653 78999999999999 799999999999999999986311 011258889988766543
No 353
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=93.68 E-value=0.059 Score=41.40 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
++ |.++||+..++ ++..++++|..|...|+|...+ | .|.|+++.-.
T Consensus 23 ~~-s~~~IA~~~~i----~~~~l~kIl~~L~~aGlv~s~r--G-~GGy~Lar~p 68 (145)
T 1xd7_A 23 KT-SSEIIADSVNT----NPVVVRRMISLLKKADILTSRA--G-VPGASLKKDP 68 (145)
T ss_dssp CC-CHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECCS--S-SSSCEESSCG
T ss_pred CC-CHHHHHHHHCc----CHHHHHHHHHHHHHCCceEeec--C-CCCceecCCH
Confidence 45 99999999999 8999999999999999998874 3 6678887644
No 354
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=93.66 E-value=0.04 Score=49.53 Aligned_cols=75 Identities=11% Similarity=0.022 Sum_probs=51.2
Q ss_pred cceEEeecCCce---------------eeeeh-hHHHhhCCC---------------------CCceeEEeCCCCcc---
Q 043063 161 VKRLVDVGGSAG---------------INFDL-PEVVAEAPS---------------------IPGVTHIGGDMFKS--- 200 (301)
Q Consensus 161 ~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~---------------------~~ri~~~~gd~~~~--- 200 (301)
..+|||+|||+| +.+|. |..++.+++ ..+++++.+|....
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 578999999995 35677 665554432 12389999998754
Q ss_pred CCc-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063 201 IPA-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIAC 241 (301)
Q Consensus 201 ~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~ 241 (301)
.+. .|+|++- .+.. ...+|..+.+.|+|||.|++.
T Consensus 128 ~~~~fD~I~lD----P~~~--~~~~l~~a~~~lk~gG~l~vt 163 (378)
T 2dul_A 128 RHRYFHFIDLD----PFGS--PMEFLDTALRSAKRRGILGVT 163 (378)
T ss_dssp STTCEEEEEEC----CSSC--CHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCCCCEEEeC----CCCC--HHHHHHHHHHhcCCCCEEEEE
Confidence 233 5988832 1111 247899999999999977664
No 355
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=93.65 E-value=0.017 Score=42.64 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=40.9
Q ss_pred cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
.++.|+..|.+++.|..+||+.+|+ ++..+.+.|+.|...|++...+
T Consensus 33 ~~~~il~~L~~~~~s~~ela~~l~i----s~stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 33 SRLMILTQLRNGPLPVTDLAEAIGM----EQSAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHSS----CHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEe
Confidence 3566777787678999999999999 7999999999999999998763
No 356
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=93.65 E-value=0.017 Score=52.17 Aligned_cols=77 Identities=12% Similarity=0.043 Sum_probs=53.4
Q ss_pred CcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCc-eeEEeCCCCccCC----c-ccEeeH
Q 043063 160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPG-VTHIGGDMFKSIP----A-ADAIFM 209 (301)
Q Consensus 160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~r-i~~~~gd~~~~~p----~-~D~v~~ 209 (301)
+..+|||++||+| +.+|. |..++.+++ .++ ++++.+|.++.+. . .|+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4579999999995 34676 666665543 245 9999999865432 2 599887
Q ss_pred hhhhccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063 210 KWVLTTWTDDECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 210 ~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
-- +.. ...+++.+.+.|+|||.|++.-
T Consensus 132 DP----~g~--~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP----FGT--PVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC----SSC--CHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC----CcC--HHHHHHHHHHHhCCCCEEEEEe
Confidence 54 111 1368899999999999766654
No 357
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=93.65 E-value=0.043 Score=38.74 Aligned_cols=51 Identities=12% Similarity=0.151 Sum_probs=40.4
Q ss_pred CCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063 20 LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV 75 (301)
Q Consensus 20 ~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 75 (301)
.|..+||+.+++ ++..+.++++.|...|+|.... ++..-.|++|+.++.+.
T Consensus 31 ~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~~~~-d~R~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 31 VYIQYIASKVNS----PHSYVWLIIKKFEEAKMVECEL-EGRTKIIRLTDKGQKIA 81 (95)
T ss_dssp EEHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEE-ETTEEEEEECHHHHHHH
T ss_pred cCHHHHHHHHCc----CHHHHHHHHHHHHHCcCccCCC-CCCeEEEEEChhHHHHH
Confidence 899999999999 8999999999999999994331 10112489999887654
No 358
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=93.64 E-value=0.16 Score=40.62 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=49.2
Q ss_pred cccccccccCCCCCCHHHHHHHhC-CCCCCCcccHHHHHHHHhcCcceecccccc----CCCeEecChhchh
Q 043063 7 RDGGKKGRLANTPLSASQILTRIL-PSGGGDAENLQRILRLLTNYGVFSEHREFG----GERKYSLTEIGKS 73 (301)
Q Consensus 7 ~~lglf~~L~~g~~t~~ela~~~~-~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~----~~~~y~~t~~s~~ 73 (301)
.++.|+..|.+++.|+.+|++.++ + ....+.+.|+.|...|+|+..+++. ....|++++.+..
T Consensus 24 ~Rl~il~~L~~~~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~~ 91 (182)
T 4g6q_A 24 LRWRITQLLIGRSLTTRELAELLPDV----ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAGD 91 (182)
T ss_dssp HHHHHHHHTTTSCEEHHHHHHHCTTB----CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTTT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEecccccc
Confidence 467889999889999999999996 7 5678999999999999998654321 1235888876533
No 359
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=93.59 E-value=0.019 Score=44.62 Aligned_cols=65 Identities=20% Similarity=0.136 Sum_probs=49.3
Q ss_pred cccccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063 7 RDGGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV 75 (301)
Q Consensus 7 ~~lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~ 75 (301)
.++.++..|. .++.|..+||+.+++ ++..+.++++.|+..|+|.+.+.. ...-.+.+|+.++.+.
T Consensus 51 ~q~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 51 GQFPFLMRLYREDGINQESLSDYLKI----DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLE 118 (159)
T ss_dssp TTHHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHH
Confidence 3455566665 378999999999999 899999999999999999987421 0111478888876654
No 360
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=93.55 E-value=0.024 Score=43.89 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=48.3
Q ss_pred ccccccccc-C-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063 7 RDGGKKGRL-A-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV 75 (301)
Q Consensus 7 ~~lglf~~L-~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~ 75 (301)
.++.++..| . .++.|..+||+.+++ ++..+.++++.|...|+|.+.... +..-.+.+|+.++.+.
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~~l~i----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSGALKV----TNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHCSS----CCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHH
Confidence 345677777 3 478999999999999 788999999999999999986311 0111377888776554
No 361
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=93.51 E-value=0.036 Score=48.20 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=41.5
Q ss_pred HHhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc---C---
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS---I--- 201 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~---~--- 201 (301)
..+++.+. ..+..+|||+|||+| +.+|. |.+++.+++ .+|++++.+|+.+. +
T Consensus 16 ~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~ 94 (301)
T 1m6y_A 16 REVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTL 94 (301)
T ss_dssp HHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHT
T ss_pred HHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhc
Confidence 34444443 556789999999995 56797 778777653 16899999997642 1
Q ss_pred --CcccEeeH
Q 043063 202 --PAADAIFM 209 (301)
Q Consensus 202 --p~~D~v~~ 209 (301)
...|.|++
T Consensus 95 g~~~~D~Vl~ 104 (301)
T 1m6y_A 95 GIEKVDGILM 104 (301)
T ss_dssp TCSCEEEEEE
T ss_pred CCCCCCEEEE
Confidence 12477765
No 362
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=93.51 E-value=0.017 Score=39.68 Aligned_cols=55 Identities=9% Similarity=0.175 Sum_probs=42.9
Q ss_pred CccccccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 3 DNECRDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 3 ~~~a~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
.-+..+..|++.|.. ++.|+.+|++.++...+..+..+.++|+.|...|+|.+.+
T Consensus 6 ~lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 6 QISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 345667778888864 7899999999997300005789999999999999999874
No 363
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=93.48 E-value=0.02 Score=43.67 Aligned_cols=64 Identities=17% Similarity=0.140 Sum_probs=46.6
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~ 75 (301)
++.++..|.. ++.|..+||+.+++ ++..+.+.++.|...|+|.+.+.. ...-.+.+|+.++.+.
T Consensus 42 ~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~ 108 (148)
T 3nrv_A 42 EWRIISVLSSASDCSVQKISDILGL----DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
T ss_dssp HHHHHHHHHHSSSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHH
Confidence 4455666653 78999999999999 799999999999999999987321 0122477888776554
No 364
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=93.38 E-value=0.035 Score=50.39 Aligned_cols=50 Identities=26% Similarity=0.405 Sum_probs=37.4
Q ss_pred CcceEEeecCCce-------------eeeeh-hHHHhhCCC--------CCceeEEeCCCCccCC-----cccEeeH
Q 043063 160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS--------IPGVTHIGGDMFKSIP-----AADAIFM 209 (301)
Q Consensus 160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~--------~~ri~~~~gd~~~~~p-----~~D~v~~ 209 (301)
...+|||+|||+| +.+|. |.+++.++. .++|+++.+|+++.++ ..|+|++
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 3579999999996 56787 777766643 1579999999987422 2599887
No 365
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=93.37 E-value=0.024 Score=42.79 Aligned_cols=64 Identities=8% Similarity=0.012 Sum_probs=47.1
Q ss_pred ccccccccCC-C--CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063 8 DGGKKGRLAN-T--PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~~-g--~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~ 75 (301)
++.++..|.. + +.|..+||+.+++ ++..+.+.++.|...|+|.+.+.. ...-.+.+|+.++.+.
T Consensus 36 ~~~iL~~l~~~~~~~~~~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 36 QMTIIDYLSRNKNKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHHHHTTTSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCC----CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHH
Confidence 3445555643 3 7999999999999 799999999999999999986321 0111477888776544
No 366
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=93.35 E-value=0.031 Score=42.78 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=46.6
Q ss_pred cccccccccC--CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhhc
Q 043063 7 RDGGKKGRLA--NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLVT 76 (301)
Q Consensus 7 ~~lglf~~L~--~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~~ 76 (301)
.++.++..|. .++.|..+||+.+++ ++..+.++++.|+..|+|.+.+.. .+. .+.+|+.++.+..
T Consensus 40 ~q~~vL~~l~~~~~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~-~D~R~~~~~LT~~G~~~~~ 109 (150)
T 3fm5_A 40 RSYSVLVLACEQAEGVNQRGVAATMGL----DPSQIVGLVDELEERGLVVRTLDP-SDRRNKLIAATEEGRRLRD 109 (150)
T ss_dssp HHHHHHHHHHHSTTCCCSHHHHHHHTC----CHHHHHHHHHHHHTTTSEEC------------CEECHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeeCCc-cccchheeeECHHHHHHHH
Confidence 3455666664 357899999999999 899999999999999999986311 111 2778888766543
No 367
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=93.32 E-value=0.024 Score=43.37 Aligned_cols=64 Identities=11% Similarity=0.154 Sum_probs=48.7
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~ 75 (301)
++.++..|.. ++.|..+||+.+++ ++..+.+.++.|...|++.+.... +..-.+.+|+.++.+.
T Consensus 44 ~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 44 QFVALQWLLEEGDLTVGELSNKMYL----ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHH
Confidence 4456666654 78999999999999 799999999999999999986311 0112478888876554
No 368
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=93.18 E-value=0.02 Score=43.39 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=48.9
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhh
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLV 75 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~ 75 (301)
.++.++..|.. ++.|..+||+.+++ ++..+.+.++.|...|++.+.+... ..-.+.+|+.++.+.
T Consensus 30 ~~~~iL~~l~~~~~~t~~~la~~l~~----s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 30 GQYLYLVRVCENPGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp THHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHCcCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHH
Confidence 34456666653 78999999999999 7999999999999999999864210 111378888876554
No 369
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=93.13 E-value=0.11 Score=40.03 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV 75 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 75 (301)
++.|..+||+.+|+ ++..+.+.|+.|...|+|.+.+ +..+.+|+.+..+.
T Consensus 53 ~~~~~~~la~~l~v----s~~tvs~~l~~Le~~Glv~r~~----~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 53 GEARQVDMAARLGV----SQPTVAKMLKRLATMGLIEMIP----WRGVFLTAEGEKLA 102 (155)
T ss_dssp SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEET----TTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEec----CCceEEChhHHHHH
Confidence 78899999999999 7889999999999999999873 56789999886554
No 370
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=93.08 E-value=0.059 Score=41.39 Aligned_cols=75 Identities=16% Similarity=0.152 Sum_probs=42.3
Q ss_pred CcceEEeecCCceeeeehhHHHhh-CC--------CCCceeEEeCCCCccCC----cccEeeHhhhhccCChHHHHHHHH
Q 043063 160 GVKRLVDVGGSAGINFDLPEVVAE-AP--------SIPGVTHIGGDMFKSIP----AADAIFMKWVLTTWTDDECKLIME 226 (301)
Q Consensus 160 ~~~~vlDvGgG~g~~~Dlp~v~~~-a~--------~~~ri~~~~gd~~~~~p----~~D~v~~~~vlh~~~d~~~~~iL~ 226 (301)
...++||||||+|. +....++. .. ....+.++..|+|.+.. .+|+|...+ |+.+.+.-+.
T Consensus 35 ~~~rVlEVG~G~g~--~vA~~La~~~g~~V~atDInp~Av~~v~dDiF~P~~~~Y~~~DLIYsir-----PP~El~~~i~ 107 (153)
T 2k4m_A 35 PGTRVVEVGAGRFL--YVSDYIRKHSKVDLVLTDIKPSHGGIVRDDITSPRMEIYRGAALIYSIR-----PPAEIHSSLM 107 (153)
T ss_dssp SSSEEEEETCTTCC--HHHHHHHHHSCCEEEEECSSCSSTTEECCCSSSCCHHHHTTEEEEEEES-----CCTTTHHHHH
T ss_pred CCCcEEEEccCCCh--HHHHHHHHhCCCeEEEEECCccccceEEccCCCCcccccCCcCEEEEcC-----CCHHHHHHHH
Confidence 45799999999973 11111110 00 01122389999998844 469886655 4445555555
Q ss_pred HHHHhCCCCCEEEEecc
Q 043063 227 NCYKAIPAGGKLIACEP 243 (301)
Q Consensus 227 ~~~~aL~pgg~lli~e~ 243 (301)
++++.. |.-++|.-.
T Consensus 108 ~lA~~v--~adliI~pL 122 (153)
T 2k4m_A 108 RVADAV--GARLIIKPL 122 (153)
T ss_dssp HHHHHH--TCEEEEECB
T ss_pred HHHHHc--CCCEEEEcC
Confidence 565543 455665543
No 371
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=93.07 E-value=0.027 Score=43.44 Aligned_cols=64 Identities=17% Similarity=0.136 Sum_probs=49.0
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~ 75 (301)
++.++..|.. ++.|..+||+.+++ ++..+.+.++.|+..|+|.+.... ...-.|.+|+.++.+.
T Consensus 46 ~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 46 ELYAFLYVALFGPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHH
Confidence 4556667764 78999999999999 789999999999999999986311 0112477888876554
No 372
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=93.06 E-value=0.02 Score=40.92 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=44.5
Q ss_pred ccccccccc-CCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 7 RDGGKKGRL-ANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 7 ~~lglf~~L-~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
.++.|+..| ..|+.|+.+||+.+|+ .+..+.+.|+.|... ++...+.+ ..-.|++++..
T Consensus 28 ~Rl~IL~~l~~~~~~~~~ela~~l~i----s~stvs~hL~~L~~~-lv~~~~~g-r~~~y~l~~~~ 87 (99)
T 2zkz_A 28 MRLKIVNELYKHKALNVTQIIQILKL----PQSTVSQHLCKMRGK-VLKRNRQG-LEIYYSINNPK 87 (99)
T ss_dssp HHHHHHHHHHHHSCEEHHHHHHHHTC----CHHHHHHHHHHHBTT-TBEEEEET-TEEEEECCCHH
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHH-hhhheEeC-cEEEEEEChHH
Confidence 356677444 4589999999999999 788999999999999 99866421 22357777643
No 373
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=93.06 E-value=0.025 Score=40.55 Aligned_cols=48 Identities=17% Similarity=0.101 Sum_probs=41.4
Q ss_pred ccccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 6 CRDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 6 a~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
..++.|+..|.. ++.|..+||+.+|+ ++..+.+.|+.|...|+|.+..
T Consensus 20 ~~~~~il~~l~~~~~~s~~ela~~l~i----s~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 20 PSDVRIYSLLLERGGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEe
Confidence 345667777764 78999999999999 7999999999999999999873
No 374
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=92.97 E-value=0.019 Score=44.09 Aligned_cols=65 Identities=17% Similarity=0.118 Sum_probs=47.4
Q ss_pred cccccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063 7 RDGGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV 75 (301)
Q Consensus 7 ~~lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~ 75 (301)
.++.++..|. .++.|..+||+.+++ ++..+.++++.|+..|+|.+.+.. ...-.+.+|+.++.+.
T Consensus 42 ~q~~iL~~l~~~~~~~~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 42 SQYLVMLTLWEENPQTLNSIGRHLDL----SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHH
Confidence 3455566665 478999999999999 899999999999999999986321 0112478888776554
No 375
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=92.95 E-value=0.2 Score=43.10 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=47.8
Q ss_pred CCCcceEEeecCCce---------------eeeehhH-HHhhCC--C---CCceeEEeC-CCCccCCc-ccEeeHhhhhc
Q 043063 158 FKGVKRLVDVGGSAG---------------INFDLPE-VVAEAP--S---IPGVTHIGG-DMFKSIPA-ADAIFMKWVLT 214 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g---------------~~~Dlp~-v~~~a~--~---~~ri~~~~g-d~~~~~p~-~D~v~~~~vlh 214 (301)
+.+..++||+||+.| +.+|+.. ...... + .+-+.+..+ |++...+. .|+|++-..-+
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~APn 158 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGES 158 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCcCC
Confidence 667899999999995 1234411 000000 0 123444444 54432233 58888755444
Q ss_pred ----cCChHHHHHHHHHHHHhCCCC-CEEEEe
Q 043063 215 ----TWTDDECKLIMENCYKAIPAG-GKLIAC 241 (301)
Q Consensus 215 ----~~~d~~~~~iL~~~~~aL~pg-g~lli~ 241 (301)
..+......+|+-+.+.|+|| |.+++-
T Consensus 159 sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K 190 (300)
T 3eld_A 159 SSNPLVERDRTMKVLENFERWKHVNTENFCVK 190 (300)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 111112356788889999999 988875
No 376
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=92.89 E-value=0.022 Score=44.38 Aligned_cols=65 Identities=18% Similarity=0.141 Sum_probs=49.4
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhhc
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLVT 76 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~~ 76 (301)
++.++..|.. ++.|..+||+.+++ ++..+.++++.|+..|+|.+.... ...-.+.+|+.++.+..
T Consensus 55 q~~vL~~l~~~~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~ 122 (161)
T 3e6m_A 55 KLRLLSSLSAYGELTVGQLATLGVM----EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLA 122 (161)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHH
Confidence 4456666654 78999999999999 799999999999999999987421 01125888888876543
No 377
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=92.88 E-value=0.022 Score=44.26 Aligned_cols=64 Identities=16% Similarity=0.139 Sum_probs=48.5
Q ss_pred ccccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063 8 DGGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~ 75 (301)
++.|+..|. .++.|..+||+.+++ ++..+.++++.|...|+|.+.... ...-.|.+|+.++.+.
T Consensus 54 ~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 54 KMRALAILSAKDGLPIGTLGIFAVV----EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 445666665 378999999999999 799999999999999999986311 0112478888776554
No 378
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=92.87 E-value=0.021 Score=44.81 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=50.2
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhhc
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLVT 76 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~~ 76 (301)
.++.++..|.. ++.|..+||+.+++ ++..+.++++.|+..|+|.+.... ...-.+.+|+.++.+..
T Consensus 46 ~~~~iL~~L~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~ 114 (168)
T 2nyx_A 46 PQFRTLVILSNHGPINLATLATLLGV----QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVR 114 (168)
T ss_dssp HHHHHHHHHHHHCSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 34556667764 78999999999999 799999999999999999986321 01123888998876543
No 379
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=92.87 E-value=0.031 Score=42.92 Aligned_cols=63 Identities=11% Similarity=0.151 Sum_probs=48.1
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceec--cccccCCC---eEecChhchhhh
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSE--HREFGGER---KYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~--~~~~~~~~---~y~~t~~s~~l~ 75 (301)
++.++..|.. ++.|..+||+.+++ ++..+.++++.|...|+|.+ .+.. .+. .+.+|+.++.+.
T Consensus 43 ~~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~~-~d~R~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 43 QLAMINVIYSTPGISVADLTKRLII----TGSSAAANVDGLISLGLVVKLNKTIP-NDSMDLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEESCC--C-TTCTTCEEEECHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCcCCC-CCCceeEeEECHHHHHHH
Confidence 4455666653 78999999999999 79999999999999999998 4211 122 588898886554
No 380
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=92.86 E-value=0.025 Score=43.01 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=48.5
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhh
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLV 75 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~ 75 (301)
.++.++..|.. ++ |..+||+.+++ ++..+.+.++.|...|+|.+.+.. .+. .+.+|+.++.+.
T Consensus 38 ~~~~iL~~l~~~~~-~~~~la~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~-~D~R~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 38 LDFSILKATSEEPR-SMVYLANRYFV----TQSAITAAVDKLEAKGLVRRIRDS-KDRRIVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHHHHHSCE-EHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeccCC-CCCceEEEEECHHHHHHH
Confidence 34556666764 45 99999999999 799999999999999999987421 111 488999887654
No 381
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=92.73 E-value=0.025 Score=40.54 Aligned_cols=53 Identities=9% Similarity=0.007 Sum_probs=42.0
Q ss_pred cccccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 5 ECRDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 5 ~a~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
+..+..|++.|.+ ++.|+.||++.++...+..+.-+.++|+-|+..|+|.+.+
T Consensus 34 T~~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 34 SNAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp CCSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 4567778888864 7999999999997510114678999999999999999874
No 382
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=92.69 E-value=0.019 Score=44.16 Aligned_cols=64 Identities=16% Similarity=0.088 Sum_probs=48.5
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~ 75 (301)
++.|+..|.. ++.|..+||+.+++ ++..+.+.++.|...|+|.+.... ...-.|.+|+.++.+.
T Consensus 39 ~~~iL~~l~~~~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 39 QLFVLASLKKHGSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHH
Confidence 3446666654 78999999999999 799999999999999999986311 0111478888776554
No 383
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=92.64 E-value=0.11 Score=39.35 Aligned_cols=64 Identities=20% Similarity=0.256 Sum_probs=48.0
Q ss_pred ccccccccC--CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063 8 DGGKKGRLA--NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~--~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~ 75 (301)
++.++..|. .++.|..+||+.+++ ++..+.+.++.|...|+|.+.... +..-.+.+|+.++.+.
T Consensus 37 ~~~iL~~l~~~~~~~~~~~la~~l~i----~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (147)
T 2hr3_A 37 QLVVLGAIDRLGGDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL 104 (147)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHH
Confidence 344556664 478999999999999 799999999999999999986321 0112488888886654
No 384
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=92.63 E-value=0.021 Score=43.06 Aligned_cols=63 Identities=14% Similarity=0.100 Sum_probs=48.9
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCC---CeEecChhchhhh
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGE---RKYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~---~~y~~t~~s~~l~ 75 (301)
++.++..|.. ++.|..+||+.+++ ++..+.+.++.|...|++.+.+.. .+ -.|.+|+.++.+.
T Consensus 38 ~~~iL~~l~~~~~~t~~ela~~l~~----s~~~vs~~l~~Le~~glv~r~~~~-~d~R~~~~~lT~~G~~~~ 104 (142)
T 2fbi_A 38 QWRVIRILRQQGEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWKAP-KDQRRVYVNLTEKGQQCF 104 (142)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCC-CCCCeeEEEECHHHHHHH
Confidence 4556666764 78999999999999 799999999999999999986311 11 1378888886654
No 385
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=92.53 E-value=0.033 Score=45.46 Aligned_cols=61 Identities=15% Similarity=0.108 Sum_probs=48.2
Q ss_pred cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc----cCCCeEecChhc
Q 043063 7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF----GGERKYSLTEIG 71 (301)
Q Consensus 7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~----~~~~~y~~t~~s 71 (301)
.++.|+..|..+|.|+.+||+.+|+ ++..+.+.|+.|...|+|...... +..-.|++|+..
T Consensus 16 ~rl~IL~~L~~~~~s~~eLa~~l~i----s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~ 80 (202)
T 2p4w_A 16 TRRRILFLLTKRPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGL 80 (202)
T ss_dssp HHHHHHHHHHHSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTE
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHH
Confidence 4566777887789999999999999 788999999999999999986421 112257777755
No 386
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.37 E-value=0.54 Score=45.62 Aligned_cols=107 Identities=16% Similarity=0.099 Sum_probs=69.6
Q ss_pred CceeEEeCCCCcc--C-----------Ccc-cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChH
Q 043063 188 PGVTHIGGDMFKS--I-----------PAA-DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQ 253 (301)
Q Consensus 188 ~ri~~~~gd~~~~--~-----------p~~-D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~ 253 (301)
++..+++.|+.+. + |.. -++++--+|.+++.+++.++|+.+.+ + |++.+++.|.+.+..+.+ +
T Consensus 188 ~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d-~ 264 (695)
T 2zwa_A 188 PKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFE-P 264 (695)
T ss_dssp SSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTS-H
T ss_pred CCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCC-h
Confidence 4889999999863 1 122 47778888889999999999999884 5 688899989887754321 1
Q ss_pred HhhhhhhccHHHHhhhhc-cccccCHHHHHHHHHhCCCCceEEEEc
Q 043063 254 RTRALLEGDIFVMTIYRA-KGKHMTEQEFKQLGFSAGFPHLRLYRV 298 (301)
Q Consensus 254 ~~~~~~~~d~~m~~~~~~-~g~~rt~~e~~~~l~~aGf~~~~~~~~ 298 (301)
..... ...+...++... -....+.++..+.|.+.||+.+...++
T Consensus 265 f~~~m-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 265 FSKQM-LAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp HHHHH-HHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred HHHHH-HHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 11110 001111110000 012347999999999999998776654
No 387
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=92.37 E-value=0.02 Score=43.58 Aligned_cols=66 Identities=20% Similarity=0.159 Sum_probs=50.0
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhhcC
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLVTD 77 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~~~ 77 (301)
++.++..|.. ++.|..+||+.+++ ++..+.+.++.|...|+|.+.+.. ...-.+.+|+.++.+...
T Consensus 42 ~~~iL~~l~~~~~~~~~~la~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~ 110 (147)
T 1z91_A 42 QYLALLLLWEHETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEK 110 (147)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGG
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCC----CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHH
Confidence 4455666654 78999999999999 799999999999999999986321 011248889988766543
No 388
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=92.37 E-value=0.04 Score=39.01 Aligned_cols=58 Identities=10% Similarity=0.145 Sum_probs=46.6
Q ss_pred ccccccCC-CCCCHHHHHH-HhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhc
Q 043063 10 GKKGRLAN-TPLSASQILT-RILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVT 76 (301)
Q Consensus 10 glf~~L~~-g~~t~~ela~-~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~ 76 (301)
.|+-.|.. ++.|..+||+ ..++ +...+.|-++.|...|+++.+ ++| +++|+.++.+..
T Consensus 20 siL~~L~~~~~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~~----~~D-l~LT~~G~~~l~ 79 (95)
T 1bja_A 20 TILITIAKKDFITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEKS----GDG-LIITGEAQDIIS 79 (95)
T ss_dssp HHHHHHHHSTTBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEEE----TTE-EEECHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeecC----CCC-eeeCHhHHHHHH
Confidence 34445543 6899999999 9999 899999999999999999944 244 999999876554
No 389
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=92.23 E-value=0.029 Score=45.87 Aligned_cols=64 Identities=14% Similarity=0.026 Sum_probs=48.9
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~ 75 (301)
++.++..|.. ++.|..+||+.+++ ++..+.++++.|...|+|.+.... ...-.+.+|+.++.+.
T Consensus 50 q~~iL~~L~~~~~~t~~eLa~~l~i----~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 50 EHHILWIAYQLNGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHHHHHTSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHH
Confidence 4455666654 78999999999999 899999999999999999987421 0011588999887654
No 390
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=92.15 E-value=0.07 Score=50.30 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=36.9
Q ss_pred eeEEeCCCCcc--CC--cccEeeHhhhhccC-------------ChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 190 VTHIGGDMFKS--IP--AADAIFMKWVLTTW-------------TDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 190 i~~~~gd~~~~--~p--~~D~v~~~~vlh~~-------------~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
+.+..+|.+.. .+ ..|+|++.--+... ++. -..+++++.+.|+|||++.++-+
T Consensus 244 ~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~-~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 244 GAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNK-QLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp BSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCH-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCch-HHHHHHHHHHHhCCCCEEEEEec
Confidence 78899998864 22 35999886444321 122 24789999999999998877743
No 391
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=91.95 E-value=0.047 Score=46.31 Aligned_cols=58 Identities=17% Similarity=0.315 Sum_probs=39.0
Q ss_pred CCCc--ceEEeecCCce-------------eeeeh-hHH-------HhhCCC-------C-CceeEEeCCCCcc---CCc
Q 043063 158 FKGV--KRLVDVGGSAG-------------INFDL-PEV-------VAEAPS-------I-PGVTHIGGDMFKS---IPA 203 (301)
Q Consensus 158 ~~~~--~~vlDvGgG~g-------------~~~Dl-p~v-------~~~a~~-------~-~ri~~~~gd~~~~---~p~ 203 (301)
.++. .+|||++||+| +.+|. |.+ ++.++. . +|++++.+|..+. ++.
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~ 163 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP 163 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSS
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcc
Confidence 4455 79999999996 56787 543 322211 1 5799999998763 333
Q ss_pred -ccEeeHhhhhcc
Q 043063 204 -ADAIFMKWVLTT 215 (301)
Q Consensus 204 -~D~v~~~~vlh~ 215 (301)
.|+|++--.++.
T Consensus 164 ~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 164 RPQVVYLDPMFPH 176 (258)
T ss_dssp CCSEEEECCCCCC
T ss_pred cCCEEEEcCCCCC
Confidence 599998766654
No 392
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=91.95 E-value=0.067 Score=41.12 Aligned_cols=46 Identities=20% Similarity=0.073 Sum_probs=40.7
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.+..|+..|.. ++.|..+||+.+|+ ++..+.+.|+.|...|++.+.
T Consensus 4 ~~~~il~~L~~~~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 4 IDLRILKILQYNAKYSLDEIAREIRI----PKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEE
Confidence 35677888875 78999999999999 799999999999999999874
No 393
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=91.87 E-value=0.02 Score=47.80 Aligned_cols=61 Identities=11% Similarity=0.172 Sum_probs=48.2
Q ss_pred cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceec-cccccC-----CCeEecChhch
Q 043063 7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSE-HREFGG-----ERKYSLTEIGK 72 (301)
Q Consensus 7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~-~~~~~~-----~~~y~~t~~s~ 72 (301)
.++.|+..|..+|.|+.+||+.+|+ .+..+.+.|+.|...|++.. ...+ . .-.|++++.+.
T Consensus 13 ~R~~IL~~L~~g~~s~~ELa~~lgl----S~stVs~hL~~Le~aGLV~~~~~~g-r~~GRp~~~Y~Lt~~~~ 79 (232)
T 2qlz_A 13 VRRDLLSHLTCMECYFSLLSSKVSV----SSTAVAKHLKIMEREGVLQSYEKEE-RFIGPTKKYYKISIAKS 79 (232)
T ss_dssp HHHHHHHHHTTTTTCSSSSCTTCCC----CHHHHHHHHHHHHHTTSEEEEEECC------CEEEEEECCCEE
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeeecC-CCCCCccEEEEEccchh
Confidence 3556888888899999999999999 78899999999999999998 3211 1 12488887653
No 394
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=91.74 E-value=0.049 Score=43.73 Aligned_cols=66 Identities=14% Similarity=0.160 Sum_probs=50.2
Q ss_pred cccccccccC---CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhhc
Q 043063 7 RDGGKKGRLA---NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLVT 76 (301)
Q Consensus 7 ~~lglf~~L~---~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~~ 76 (301)
.++.++..|. .++.|..+||+.+++ ++..+.++++.|+..|+|.+..... ..-.+.+|+.++.+..
T Consensus 42 ~q~~vL~~L~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 112 (189)
T 3nqo_A 42 RQYMTILSILHLPEEETTLNNIARKMGT----SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMV 112 (189)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 3445566665 468999999999999 7899999999999999999864210 1125889999876554
No 395
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=91.62 E-value=0.14 Score=38.38 Aligned_cols=65 Identities=20% Similarity=0.240 Sum_probs=48.4
Q ss_pred ccccccccCC---CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhhc
Q 043063 8 DGGKKGRLAN---TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLVT 76 (301)
Q Consensus 8 ~lglf~~L~~---g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~~ 76 (301)
++.++..|.. ++.|..+||+.+++ ++..+.++++.|...|+|.+..... ..-.+.+|+.++.+..
T Consensus 33 ~~~vL~~l~~~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~ 102 (139)
T 3eco_A 33 QGHTLGYLYAHQQDGLTQNDIAKALQR----TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVE 102 (139)
T ss_dssp HHHHHHHHHHSTTTCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHH
Confidence 3445555643 38999999999999 7999999999999999999864210 1124778888876553
No 396
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=91.57 E-value=0.13 Score=38.90 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=36.6
Q ss_pred ccccc--CCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 11 KKGRL--ANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 11 lf~~L--~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
++..| ..++.|..+||+.+|+ ++..+.++|+.|...|++.+.
T Consensus 31 il~~L~~~~~~~t~~ela~~l~~----~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 31 VYAILYLSDKPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHCSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 34444 3588999999999999 789999999999999999986
No 397
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=91.43 E-value=0.12 Score=39.23 Aligned_cols=64 Identities=13% Similarity=0.161 Sum_probs=40.3
Q ss_pred ccccccccCC---CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhh
Q 043063 8 DGGKKGRLAN---TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~~---g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~ 75 (301)
++.++..|.. ++.|..+||+.+++ ++..+.++++.|...|+|.+..... ..-.+.+|+.++.+.
T Consensus 43 q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 111 (148)
T 3jw4_A 43 QGRMIGYIYENQESGIIQKDLAQFFGR----RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALV 111 (148)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHH
Confidence 3445555542 68999999999999 7889999999999999999874210 011466777776554
No 398
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=91.31 E-value=0.11 Score=38.72 Aligned_cols=64 Identities=8% Similarity=0.087 Sum_probs=47.5
Q ss_pred cccccccC-C--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhhc
Q 043063 9 GGKKGRLA-N--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLVT 76 (301)
Q Consensus 9 lglf~~L~-~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~~ 76 (301)
+.++..|. . ++.|..+||+.+++ ++..+.++++.|...|+|.+.+.. ...-.+.+|+.++.+..
T Consensus 40 ~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~ 108 (127)
T 2frh_A 40 FAVLTYISENKEKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIE 108 (127)
T ss_dssp HHHHHHHHHTCCSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHH
T ss_pred HHHHHHHHhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 34444553 2 67899999999999 789999999999999999985321 01124788888876543
No 399
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=91.25 E-value=0.092 Score=42.42 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=41.4
Q ss_pred cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.+..|+..|.+++.|..+||+.+|+ .+..+.+.|+.|...|++.+.
T Consensus 21 ~~~~IL~~L~~~~~s~~eLA~~lgl----S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 21 TRRKILKLLRNKEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 4556788888889999999999999 788999999999999999876
No 400
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=91.23 E-value=0.031 Score=41.28 Aligned_cols=64 Identities=16% Similarity=0.176 Sum_probs=47.9
Q ss_pred cccccccccccCC-CCCCHHHHHHHhC----CCCCCCcccHHHHHHHHhcCcceeccccccCCCe---EecChhchhhh
Q 043063 5 ECRDGGKKGRLAN-TPLSASQILTRIL----PSGGGDAENLQRILRLLTNYGVFSEHREFGGERK---YSLTEIGKSLV 75 (301)
Q Consensus 5 ~a~~lglf~~L~~-g~~t~~ela~~~~----~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~---y~~t~~s~~l~ 75 (301)
+..+..|+..|.. ++.|..+||+.++ + .+..+.++|+.|...|+|.+.+. +.+ +.+|+.++.+.
T Consensus 9 t~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~----s~~tv~~~l~~L~~~Glv~r~~~---~rr~~~~~lT~~g~~~~ 80 (123)
T 1okr_A 9 SSAEWEVMNIIWMKKYASANNIIEEIQMQKDW----SPKTIRTLITRLYKKGFIDRKKD---NKIFQYYSLVEESDIKY 80 (123)
T ss_dssp CHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHTSEEEEEE---TTEEEEEESSCHHHHHH
T ss_pred CHHHHHHHHHHHhCCCcCHHHHHHHHhccCCC----cHhhHHHHHHHHHHCCCeEEEec---CCeEEEEEecCHHHHHH
Confidence 4455667777764 7899999999998 5 58899999999999999998741 222 34666655443
No 401
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=91.09 E-value=0.078 Score=37.83 Aligned_cols=37 Identities=11% Similarity=0.302 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 17 NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
.++.|..+||+.+|+ ++..+.+.|+.|...|++.+.+
T Consensus 34 ~~~~t~~ela~~l~i----s~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 34 EKPITSEELADIFKL----SKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp CSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeec
Confidence 578999999999999 7889999999999999999873
No 402
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=91.07 E-value=0.049 Score=39.49 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=39.2
Q ss_pred cccccccccC-CC-CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 7 RDGGKKGRLA-NT-PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 7 ~~lglf~~L~-~g-~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.++.|+..|. .| +.|..+||+.+|+ +...+++.|+.|...|++...
T Consensus 19 ~~l~Il~~l~~~g~~~s~~eLa~~lgv----s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 19 DVIDVLRILLDKGTEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp TTHHHHHHHHHHCSCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 4556777773 35 7899999999999 788999999999999999875
No 403
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=91.05 E-value=0.041 Score=40.98 Aligned_cols=46 Identities=13% Similarity=0.184 Sum_probs=39.0
Q ss_pred cccccccccCC--CC-CCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 7 RDGGKKGRLAN--TP-LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 7 ~~lglf~~L~~--g~-~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.+..|+..|.. +| .|+.+||+.+++ +...+.|.|+.|...|++.+.
T Consensus 27 ~e~~il~~L~~~~~~~~t~~eLa~~l~~----s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 27 ADLNVMKSFLNEPDRWIDTDALSKSLKL----DVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHHSTTCCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 34556777753 45 899999999999 799999999999999999876
No 404
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=90.87 E-value=0.096 Score=35.11 Aligned_cols=53 Identities=13% Similarity=0.158 Sum_probs=45.9
Q ss_pred ccccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063 8 DGGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT 68 (301)
Q Consensus 8 ~lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 68 (301)
+-.|++.|.+ .|++..+||+.+|+ +..-+.+.|..|-..|.|.... .-.|+++
T Consensus 21 eekVLe~LkeaG~PlkageIae~~Gv----dKKeVdKaik~LKkEgkI~SPk----RCyw~~~ 75 (80)
T 2lnb_A 21 EQRILQVLTEAGSPVKLAQLVKECQA----PKRELNQVLYRMKKELKVSLTS----PATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHTSCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE----TTEEEES
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCccCCC----CceeeCC
Confidence 4457788864 79999999999999 8999999999999999999883 6788876
No 405
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=90.84 E-value=0.46 Score=46.67 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=51.0
Q ss_pred CCCcceEEeecCCce------------------eeeeh-hHHHhhC--C----C------CCceeEEeCCCCcc--CC--
Q 043063 158 FKGVKRLVDVGGSAG------------------INFDL-PEVVAEA--P----S------IPGVTHIGGDMFKS--IP-- 202 (301)
Q Consensus 158 ~~~~~~vlDvGgG~g------------------~~~Dl-p~v~~~a--~----~------~~ri~~~~gd~~~~--~p-- 202 (301)
+....+|+|.|||+| .++|+ |.+++.| + . .+...+...|++.+ .+
T Consensus 319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~ 398 (878)
T 3s1s_A 319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFA 398 (878)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGT
T ss_pred CCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccC
Confidence 345679999999996 24565 5554444 1 0 12235566677653 12
Q ss_pred cccEeeHhhhhcc-CCh-H-------------------------HHHHHHHHHHHhCCCCCEEEEecc
Q 043063 203 AADAIFMKWVLTT-WTD-D-------------------------ECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 203 ~~D~v~~~~vlh~-~~d-~-------------------------~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
..|+|++.=-.-. +.. . -...+++++.+.|+|||++.++-+
T Consensus 399 kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 399 NVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp TEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 2488887433311 111 0 123578889999999998776654
No 406
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=90.81 E-value=0.07 Score=40.79 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=40.3
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.+..|++.|.. ++.|..+||+++|+ .+..+.+.|+.|...|++.+.
T Consensus 6 ~d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 6 IDLNIIEELKKDSRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 35567888864 78999999999999 799999999999999999865
No 407
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=90.67 E-value=0.12 Score=39.45 Aligned_cols=53 Identities=17% Similarity=0.291 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhh
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLV 75 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~ 75 (301)
++.|..+||+.+++ ++..+.++++.|...|+|++.+.. .+. ...+|+.++.+.
T Consensus 50 ~~~t~~eLa~~l~~----~~~tvs~~v~~Le~~Glv~r~~~~-~DrR~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 50 GELPMSKIGERLMV----HPTSVTNTVDRLVRSGLVAKRPNP-NDGRGTLATITDKGREVV 105 (147)
T ss_dssp GEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC-----CEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCEEEeecC-CcCceeEEEECHHHHHHH
Confidence 67999999999999 899999999999999999987421 112 377888876654
No 408
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=90.60 E-value=0.077 Score=40.81 Aligned_cols=47 Identities=23% Similarity=0.123 Sum_probs=40.9
Q ss_pred ccccccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 6 CRDGGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 6 a~~lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
..+..|+..|. .++.|..+||+++|+ .+..+.+.|+.|...|++.+.
T Consensus 7 ~~~~~iL~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 7 DIDRILVRELAADGRATLSELATRAGL----SVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 34567788886 488999999999999 789999999999999999765
No 409
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=90.55 E-value=0.15 Score=39.76 Aligned_cols=64 Identities=22% Similarity=0.343 Sum_probs=46.0
Q ss_pred ccccccccCC---CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhhc
Q 043063 8 DGGKKGRLAN---TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLVT 76 (301)
Q Consensus 8 ~lglf~~L~~---g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~~ 76 (301)
++.++..|.. ++.|..+||+.+++ ++..+.++++.|+..|+|.+.... .+. .+.+|+.++.+..
T Consensus 48 q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~-~DrR~~~l~LT~~G~~~~~ 117 (168)
T 3u2r_A 48 QYNTLRLLRSVHPEGMATLQIADRLIS----RAPDITRLIDRLDDRGLVLRTRKP-ENRRVVEVALTDAGLKLLK 117 (168)
T ss_dssp HHHHHHHHHHHTTSCEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEEET-TEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEeecCCC-CCCCeeEeEECHHHHHHHH
Confidence 4445555643 48999999999999 788999999999999999987421 111 4788988876553
No 410
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=90.54 E-value=0.23 Score=38.75 Aligned_cols=64 Identities=20% Similarity=0.175 Sum_probs=47.7
Q ss_pred ccccccccC--CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063 8 DGGKKGRLA--NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~--~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~ 75 (301)
++.++..|. .++.|..+||+.+++ ++..+.++++.|+..|+|.+.... ...-.+.+|+.++.+.
T Consensus 55 q~~vL~~L~~~~~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 122 (166)
T 3deu_A 55 HWVTLHNIHQLPPDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI 122 (166)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHH
Confidence 445666664 367999999999999 899999999999999999987421 0112478888877654
No 411
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=90.49 E-value=0.21 Score=38.22 Aligned_cols=60 Identities=12% Similarity=0.106 Sum_probs=45.6
Q ss_pred cccccccccccC--CCCCCHHHHHHHh-----CCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063 5 ECRDGGKKGRLA--NTPLSASQILTRI-----LPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT 68 (301)
Q Consensus 5 ~a~~lglf~~L~--~g~~t~~ela~~~-----~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 68 (301)
|..+.-|++.|. .++.|+++|.+.+ ++ +..-+.|.|+.|+..|++.+...+++..+|.++
T Consensus 21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 87 (145)
T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNM----SVATVYNNLRVFRESGLVKELTYGDASSRFDFV 87 (145)
T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC----CHHHHHHHHHHHHHTTSEEEECCTTSCCEEEEC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----ChhhHHHHHHHHHHCCCEEEEeeCCCceEEECC
Confidence 556677888885 3689999999999 55 677999999999999999987422122357653
No 412
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=90.36 E-value=0.12 Score=40.38 Aligned_cols=46 Identities=13% Similarity=0.148 Sum_probs=40.7
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.+..|++.|.. +++|..+||+++|+ .+..+.+-++.|...|++.+.
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~lg~----s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVGL----STTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHTC----CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeec
Confidence 45668888875 89999999999999 799999999999999999865
No 413
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=90.21 E-value=0.39 Score=36.82 Aligned_cols=63 Identities=21% Similarity=0.222 Sum_probs=47.0
Q ss_pred cccccccC--CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhhc
Q 043063 9 GGKKGRLA--NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLVT 76 (301)
Q Consensus 9 lglf~~L~--~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~~ 76 (301)
+.++-.|. +++.+..+||+.+++ ++..+.++++.|+..|+|.+.+.. .+. ...+|+.++.+..
T Consensus 34 ~~vL~~L~~~~~~~~~~eLa~~l~~----~~~tvs~~v~~Le~~GlV~R~~~~-~DrR~~~l~LT~~G~~~~~ 101 (151)
T 4aik_A 34 WVTLYNINRLPPEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLITRHTSA-NDRRAKRIKLTEQSSPIIE 101 (151)
T ss_dssp HHHHHHHHHSCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECS-SCTTCEEEEECGGGHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHCc----CHHHHHHHHHHHHhCCCeEeecCC-CCCcchhhhcCHHHHHHHH
Confidence 34455564 245788999999999 899999999999999999977421 122 4788888876553
No 414
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=89.91 E-value=0.09 Score=41.01 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=40.3
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.+..|++.|.. ++.|..+||+++|+ .+..+.+.|+.|...|++.+.
T Consensus 11 ~~~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 11 TDIKILQVLQENGRLTNVELSERVAL----SPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEeee
Confidence 45567888864 78999999999999 788999999999999999865
No 415
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=89.69 E-value=0.14 Score=37.71 Aligned_cols=65 Identities=20% Similarity=0.235 Sum_probs=49.6
Q ss_pred cccccccccCCCCCCHHHHHHHhC--------CCCCCCc-ccHHHHHHHHhcCcceeccccc--c-CCCeEecChhchhh
Q 043063 7 RDGGKKGRLANTPLSASQILTRIL--------PSGGGDA-ENLQRILRLLTNYGVFSEHREF--G-GERKYSLTEIGKSL 74 (301)
Q Consensus 7 ~~lglf~~L~~g~~t~~ela~~~~--------~~~~~~~-~~l~~lL~~L~~~g~l~~~~~~--~-~~~~y~~t~~s~~l 74 (301)
.++-|+..|..+|.+..+|++.+. + ++ ..+.+.|+.|...|+|+..... + ..-.|++|+.++.+
T Consensus 14 ~~~~IL~~L~~~~~~gyel~~~l~~~g~~~~~i----s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~ 89 (118)
T 2esh_A 14 LASTILLLVAEKPSHGYELAERLAEFGIEIPGI----GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLY 89 (118)
T ss_dssp HHHHHHHHHHHSCBCHHHHHHHHHTTCCSSTTC----CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhCCcccCC----CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHH
Confidence 345567777778999999999983 6 67 8999999999999999876421 0 11259999999765
Q ss_pred h
Q 043063 75 V 75 (301)
Q Consensus 75 ~ 75 (301)
.
T Consensus 90 l 90 (118)
T 2esh_A 90 L 90 (118)
T ss_dssp H
T ss_pred H
Confidence 4
No 416
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=89.58 E-value=0.053 Score=43.04 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=47.0
Q ss_pred cccccccccCC-CC---CCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063 7 RDGGKKGRLAN-TP---LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV 75 (301)
Q Consensus 7 ~~lglf~~L~~-g~---~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~ 75 (301)
.++.|+..|.. ++ .|..+||+.+++ ++..+.++++.|...|+|.+.... ...-.+.+|+.++.+.
T Consensus 70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 70 AGWDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALV 140 (181)
T ss_dssp HHHHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 34556666753 33 899999999999 788999999999999999986311 0011477888776554
No 417
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=89.39 E-value=0.089 Score=40.47 Aligned_cols=47 Identities=13% Similarity=0.161 Sum_probs=40.8
Q ss_pred ccccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 6 CRDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 6 a~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
..+..|++.|.. ++.|..+||+++|+ .+..+.+.++.|...|++.+.
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADILNT----TRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHTTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 345678888864 78999999999999 788999999999999999865
No 418
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=89.25 E-value=0.25 Score=37.82 Aligned_cols=52 Identities=21% Similarity=0.326 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhh
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLV 75 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~ 75 (301)
+++|..+||+.+++ ++..+.++++.|+..|+|.+..+ .+. ...+|+.++.+.
T Consensus 51 ~~~t~~eLa~~l~~----~~~tvsr~v~~Le~~glVr~~~~--~DrR~~~v~LT~~G~~~~ 105 (148)
T 4fx0_A 51 IDLTMSELAARIGV----ERTTLTRNLEVMRRDGLVRVMAG--ADARCKRIELTAKGRAAL 105 (148)
T ss_dssp ---CHHHHHHHHTC----CHHHHHHHHHHHHHTTSBC-------------CCBCHHHHHHH
T ss_pred CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeCC--CCCCeeEEEECHHHHHHH
Confidence 46899999999999 89999999999999999955421 122 366777776544
No 419
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=88.93 E-value=0.087 Score=40.58 Aligned_cols=46 Identities=17% Similarity=0.096 Sum_probs=40.3
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.+..|++.|.. ++.|..+||+++|+ .+..+.+.++.|...|++.+.
T Consensus 8 ~~~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 8 IDKKIIKILQNDGKAPLREISKITGL----AESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 45667888864 78999999999999 789999999999999999865
No 420
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=88.83 E-value=0.19 Score=38.22 Aligned_cols=44 Identities=16% Similarity=0.100 Sum_probs=39.8
Q ss_pred ccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 10 GKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 10 glf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
.|.+.|..|+.|..+||+++|+ ......-.|+.|...|++.+..
T Consensus 15 ~ILE~Lk~G~~~t~~Iak~LGl----Shg~aq~~Ly~LeREG~V~~Vk 58 (165)
T 2vxz_A 15 DILALLADGCKTTSLIQQRLGL----SHGRAKALIYVLEKEGRVTRVA 58 (165)
T ss_dssp HHHHHHTTCCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHhCCccHHHHHHHhCC----cHHHHHHHHHHHHhcCceEEEE
Confidence 4677888899999999999999 6889999999999999999884
No 421
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=88.82 E-value=0.2 Score=37.83 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=45.4
Q ss_pred cccccccccccCC---CCCCHHHHHHHh-----CCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063 5 ECRDGGKKGRLAN---TPLSASQILTRI-----LPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT 68 (301)
Q Consensus 5 ~a~~lglf~~L~~---g~~t~~ela~~~-----~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 68 (301)
|..+.-|++.|.+ ++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+....+...+|..+
T Consensus 17 T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 84 (136)
T 1mzb_A 17 TLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDV----GLATVYRVLTQFEAAGLVVRHNFDGGHAVFELA 84 (136)
T ss_dssp CHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEECSSSSSCEEEES
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC----CHHHHHHHHHHHHHCCcEEEEEeCCCceEEEeC
Confidence 5566778888853 689999999998 55 677899999999999999987422122457653
No 422
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=88.60 E-value=0.12 Score=40.90 Aligned_cols=46 Identities=17% Similarity=0.096 Sum_probs=40.3
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.+..|++.|.. ++.|..|||+++|+ .+..+.+-|+.|...|++.+.
T Consensus 28 ~d~~IL~~L~~~~~~s~~eLA~~lgl----S~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 28 IDKKIIKILQNDGKAPLREISKITGL----AESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 45567888864 88999999999999 789999999999999999865
No 423
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=88.58 E-value=0.46 Score=36.61 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=56.8
Q ss_pred cccccccCC---CCCCHHHHHHHhC-CCCCCCcccHHHHHHHHhcCcceecccccc---CCC----eEecChhchhhhcC
Q 043063 9 GGKKGRLAN---TPLSASQILTRIL-PSGGGDAENLQRILRLLTNYGVFSEHREFG---GER----KYSLTEIGKSLVTD 77 (301)
Q Consensus 9 lglf~~L~~---g~~t~~ela~~~~-~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~---~~~----~y~~t~~s~~l~~~ 77 (301)
+.|++.|.. +..|+++|++.++ + ...-+.+.|+.|+..|+|++....+ ..| .|++|+.++.+...
T Consensus 32 ~~IL~~Ll~~p~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l~~ 107 (151)
T 3u1d_A 32 LDVLHQILAQPDGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALLRA 107 (151)
T ss_dssp HHHHHHHHHSTTSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHHHH
Confidence 445666632 4579999999998 8 6889999999999999999642110 112 79999999765443
Q ss_pred CCCCChhHHHHhhcchhHHhhhhhHHHhhc
Q 043063 78 AEGQSYAPYVLQHHQDALMSAWPLVHEAIL 107 (301)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 107 (301)
.. .+. ...+|..|.+.+.
T Consensus 108 y~--~la----------~~~alr~l~~~v~ 125 (151)
T 3u1d_A 108 VS--MYE----------EAAVWRSVYEQME 125 (151)
T ss_dssp TT--CST----------HHHHTHHHHHHSC
T ss_pred hH--HHh----------HHHHHHHHHHHhh
Confidence 21 111 1246777777774
No 424
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=88.56 E-value=0.1 Score=40.23 Aligned_cols=46 Identities=11% Similarity=0.153 Sum_probs=40.3
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.+..|++.|.. ++.|..+||+++|+ .+..+.+.++.|...|++.+.
T Consensus 9 ~d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 9 LDRGILEALMGNARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHcCCcceE
Confidence 45567888864 78999999999999 789999999999999999865
No 425
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=88.52 E-value=0.43 Score=38.55 Aligned_cols=50 Identities=26% Similarity=0.375 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063 17 NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV 75 (301)
Q Consensus 17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 75 (301)
.+|.+..+||+.+|+ .++.++..++.|...|+++.. .+...+|+.++.+.
T Consensus 28 ~~~V~~~~LA~~Lgv----S~~SV~~~lkkL~e~GLV~~~-----~~Gv~LTe~G~~~A 77 (200)
T 2p8t_A 28 KEPLGRKQISERLEL----GEGSVRTLLRKLSHLDIIRSK-----QRGHFLTLKGKEIR 77 (200)
T ss_dssp TSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC-------CEEECHHHHHHH
T ss_pred cCCccHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe-----CCCeEECHHHHHHH
Confidence 478999999999999 799999999999999999998 47899999887543
No 426
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=88.40 E-value=0.13 Score=40.55 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=40.0
Q ss_pred cccccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 7 RDGGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 7 ~~lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.+..|++.|. +++.|..+||+++|+ .+..+.+.|+.|...|++.+.
T Consensus 18 ~d~~IL~~L~~~~~~s~~eLA~~lgl----S~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 18 LDRNILRLLKKDARLTISELSEQLKK----PESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 4556778886 478999999999999 789999999999999999765
No 427
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=88.28 E-value=0.35 Score=35.74 Aligned_cols=57 Identities=11% Similarity=0.101 Sum_probs=45.5
Q ss_pred cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063 7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71 (301)
Q Consensus 7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s 71 (301)
+.-.|.+.+...|.++.+||+.+++ ++..+..+|+.|+..|.+..- .++.|-++..-
T Consensus 8 l~~~i~~~~~~~p~~~~~la~~~~~----~~~~~~~~l~~l~~~G~l~~i----~~~~~~~~~~~ 64 (121)
T 2pjp_A 8 IWQKAEPLFGDEPWWVRDLAKETGT----DEQAMRLTLRQAAQQGIITAI----VKDRYYRNDRI 64 (121)
T ss_dssp HHHHHGGGCSSSCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE----ETTEEEEHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe----cCCceECHHHH
Confidence 3445666665467799999999999 899999999999999999888 36777766543
No 428
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=88.28 E-value=0.62 Score=43.82 Aligned_cols=83 Identities=16% Similarity=0.217 Sum_probs=53.3
Q ss_pred CcceEEeecCCce------------------eeeeh-hHHHhhCCC------C--CceeEEeCCCCcc-CC---c--ccE
Q 043063 160 GVKRLVDVGGSAG------------------INFDL-PEVVAEAPS------I--PGVTHIGGDMFKS-IP---A--ADA 206 (301)
Q Consensus 160 ~~~~vlDvGgG~g------------------~~~Dl-p~v~~~a~~------~--~ri~~~~gd~~~~-~p---~--~D~ 206 (301)
...+|+|.+||+| .++|+ |.++..|+. . +++.+..+|.+.. +| . .|+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 4579999999996 24465 544444432 1 4678999999865 33 2 499
Q ss_pred eeHhhhhc-cC------------------C---hHHHHHHHHHHHHhCC-CCCEEEEecc
Q 043063 207 IFMKWVLT-TW------------------T---DDECKLIMENCYKAIP-AGGKLIACEP 243 (301)
Q Consensus 207 v~~~~vlh-~~------------------~---d~~~~~iL~~~~~aL~-pgg~lli~e~ 243 (301)
|+..=-+. .| + +.+ ..+++++.+.|+ |||++.++-+
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTTTCEEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCCceeEEEEec
Confidence 88641111 11 1 111 248999999999 9998866543
No 429
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=88.20 E-value=0.12 Score=38.83 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=45.0
Q ss_pred cccccccccccC--CCCCCHHHHHHHh-----CCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEec
Q 043063 5 ECRDGGKKGRLA--NTPLSASQILTRI-----LPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSL 67 (301)
Q Consensus 5 ~a~~lglf~~L~--~g~~t~~ela~~~-----~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~ 67 (301)
|..+.-|++.|. .++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+...+++..+|..
T Consensus 10 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i----s~~TVYR~L~~L~e~Glv~~~~~~~~~~~y~~ 75 (131)
T 2o03_A 10 TRQRAAISTLLETLDDFRSAQELHDELRRRGENI----GLTTVYRTLQSMASSGLVDTLHTDTGESVYRR 75 (131)
T ss_dssp HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHTTTSEEEEECTTSCEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCEEEEEeCCCceEEEe
Confidence 455667888885 3689999999998 56 67899999999999999998742212235654
No 430
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=87.98 E-value=0.11 Score=39.28 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=39.7
Q ss_pred cccccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 7 RDGGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 7 ~~lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.+..|+..|. .++.|..+||+.+|+ .+..+.+.|+.|...|++.+.
T Consensus 5 ~~~~il~~L~~~~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 5 RDKIILEILEKDARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEecc
Confidence 3556777785 478999999999999 799999999999999999765
No 431
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=87.92 E-value=0.38 Score=35.90 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=31.5
Q ss_pred CCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 20 LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 20 ~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.|.++||+.+|+ ++..+.+.|+.|...|+|.+.
T Consensus 52 ps~~~LA~~l~~----s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 52 PTPAELAERMTV----SAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp CCHHHHHHTSSS----CHHHHHHHHHHHHHTTSSEEC
T ss_pred CCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 699999999999 899999999999999999986
No 432
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=87.70 E-value=0.15 Score=39.07 Aligned_cols=65 Identities=17% Similarity=0.079 Sum_probs=49.8
Q ss_pred cccccccccCCCCCCHHHHHHHh--------CCCCCCCcccHHHHHHHHhcCcceeccccc---c-CCCeEecChhchhh
Q 043063 7 RDGGKKGRLANTPLSASQILTRI--------LPSGGGDAENLQRILRLLTNYGVFSEHREF---G-GERKYSLTEIGKSL 74 (301)
Q Consensus 7 ~~lglf~~L~~g~~t~~ela~~~--------~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~---~-~~~~y~~t~~s~~l 74 (301)
+++-|+..|..+|.+..+|++.+ ++ .+..+.+.|+.|...|+|.+.... + ..-.|++|+.++.+
T Consensus 42 ~~~~IL~~L~~~~~~gyeI~~~l~~~~~~~~~i----s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~ 117 (145)
T 1xma_A 42 VDTIILSLLIEGDSYGYEISKNIRIKTDELYVI----KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKY 117 (145)
T ss_dssp HHHHHHHHHHHCCEEHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHhhCCccCc----ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHH
Confidence 45667777877899999998888 47 789999999999999999876321 0 11259999988765
Q ss_pred h
Q 043063 75 V 75 (301)
Q Consensus 75 ~ 75 (301)
.
T Consensus 118 l 118 (145)
T 1xma_A 118 Y 118 (145)
T ss_dssp H
T ss_pred H
Confidence 4
No 433
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=87.64 E-value=0.22 Score=37.82 Aligned_cols=64 Identities=19% Similarity=0.175 Sum_probs=45.7
Q ss_pred cccccccccccCC--CCCCHHHHHHHhCCCCC-CCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063 5 ECRDGGKKGRLAN--TPLSASQILTRILPSGG-GDAENLQRILRLLTNYGVFSEHREFGGERKYSLT 68 (301)
Q Consensus 5 ~a~~lglf~~L~~--g~~t~~ela~~~~~~~~-~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 68 (301)
|..+.-|++.|.+ ++.|++||.+.+.-..| .+..-+.|.|+.|+..|++.+...+++..+|...
T Consensus 13 T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~ 79 (139)
T 3mwm_A 13 TRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRRC 79 (139)
T ss_dssp HHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEECC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEEC
Confidence 4556778888864 68999999998842111 1577899999999999999987422123467654
No 434
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=87.64 E-value=1.6 Score=36.36 Aligned_cols=89 Identities=13% Similarity=0.110 Sum_probs=53.2
Q ss_pred HHhhhcCCCCCCcceEEeecCCce---------------eeeehhHHHhh----CCC--CCceeEEeC-CCCccCCc-cc
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG---------------INFDLPEVVAE----APS--IPGVTHIGG-DMFKSIPA-AD 205 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dlp~v~~~----a~~--~~ri~~~~g-d~~~~~p~-~D 205 (301)
.++.+.+ .+....+|||+||+.| +.+|+-..-.. .+. .+-|+|..+ |++.--|. .|
T Consensus 68 ~ei~ek~-~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~D 146 (267)
T 3p8z_A 68 QWFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKCD 146 (267)
T ss_dssp HHHHHTT-SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCCS
T ss_pred HHHHHhc-CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCcccc
Confidence 4555566 3777789999999995 34565211111 111 278999999 97654333 58
Q ss_pred EeeHhhhhccCCh--HHH---HHHHHHHHHhCCCCCEEEE
Q 043063 206 AIFMKWVLTTWTD--DEC---KLIMENCYKAIPAGGKLIA 240 (301)
Q Consensus 206 ~v~~~~vlh~~~d--~~~---~~iL~~~~~aL~pgg~lli 240 (301)
+++|-.-= --+. -+. .++|.-+.+.|++ |-+.|
T Consensus 147 tllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~ 184 (267)
T 3p8z_A 147 TLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCI 184 (267)
T ss_dssp EEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE
T ss_pred EEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEE
Confidence 87764433 1122 122 3467777788988 55555
No 435
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=87.28 E-value=0.89 Score=36.85 Aligned_cols=76 Identities=8% Similarity=-0.042 Sum_probs=45.9
Q ss_pred CcceEEeecCCce------------eeeeh-hHHHhhCC-------C--CCceeEEeCCCCcc-----------------
Q 043063 160 GVKRLVDVGGSAG------------INFDL-PEVVAEAP-------S--IPGVTHIGGDMFKS----------------- 200 (301)
Q Consensus 160 ~~~~vlDvGgG~g------------~~~Dl-p~v~~~a~-------~--~~ri~~~~gd~~~~----------------- 200 (301)
+..+||+||+|.. +-+|. ++..+.++ . .++|+++.||..+.
T Consensus 30 ~a~~VLEiGtGySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~ 109 (202)
T 3cvo_A 30 EAEVILEYGSGGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPD 109 (202)
T ss_dssp HCSEEEEESCSHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTH
T ss_pred CCCEEEEECchHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHH
Confidence 4579999999872 23453 44433332 2 46899999995431
Q ss_pred -------CC--c-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063 201 -------IP--A-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 201 -------~p--~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e 242 (301)
.+ . .|+|++-.- .....+..+.+.|+|||.|++-+
T Consensus 110 ~~~~i~~~~~~~~fDlIfIDg~-------k~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 110 YPLAVWRTEGFRHPDVVLVDGR-------FRVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp HHHGGGGCTTCCCCSEEEECSS-------SHHHHHHHHHHHCSSCEEEEETT
T ss_pred HhhhhhccccCCCCCEEEEeCC-------CchhHHHHHHHhcCCCeEEEEeC
Confidence 11 1 388776541 11244455667899999885444
No 436
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=87.26 E-value=0.17 Score=36.65 Aligned_cols=63 Identities=19% Similarity=0.140 Sum_probs=47.8
Q ss_pred ccccccccCCCCCCHHHHHHHh----CCCCCCCcccHHHHHHHHhcCcceeccccccCCC----eEecChhchhhh
Q 043063 8 DGGKKGRLANTPLSASQILTRI----LPSGGGDAENLQRILRLLTNYGVFSEHREFGGER----KYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~~g~~t~~ela~~~----~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~----~y~~t~~s~~l~ 75 (301)
++-|+..|..+|.+-.+|++.+ ++ ++..+.+.|+.|...|+|+..... .++ .|++|+.++...
T Consensus 11 ~~~IL~~L~~~~~~gyel~~~l~~~~~i----~~~tly~~L~~Le~~GlI~~~~~~-~~~r~r~~y~LT~~G~~~l 81 (108)
T 3l7w_A 11 EYLILAIVSKHDSYGYDISQTIKLIASI----KESTLYPILKKLEKAGYLSTYTQE-HQGRRRKYYHLTDSGEKHL 81 (108)
T ss_dssp HHHHHHHHHHSCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEEEEE-ETTEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHhCC----CcChHHHHHHHHHHCCCeEEEeec-CCCCcceEEEECHHHHHHH
Confidence 4456667777888888888875 67 788999999999999999976321 022 499999887644
No 437
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=87.07 E-value=0.49 Score=39.07 Aligned_cols=47 Identities=19% Similarity=0.332 Sum_probs=41.0
Q ss_pred CHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063 21 SASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV 75 (301)
Q Consensus 21 t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 75 (301)
+..+||+.+++ ++..+.+.|+.|...|++.+.+ +..+.+|+.++.+.
T Consensus 26 ~~~~La~~l~v----s~~tvs~~l~~Le~~GlV~r~~----~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 26 LRARIAERLDQ----SGPTVSQTVSRMERDGLLRVAG----DRHLELTEKGRALA 72 (230)
T ss_dssp CHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECT----TSCEEECHHHHHHH
T ss_pred cHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC----CccEEECHHHHHHH
Confidence 34999999999 7899999999999999999983 56799999887654
No 438
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=86.88 E-value=0.24 Score=39.30 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=47.9
Q ss_pred cccccccccCCCCCCHHHHHHHh--------CCCCCCCcccHHHHHHHHhcCcceeccccc--c--CCCeEecChhchh
Q 043063 7 RDGGKKGRLANTPLSASQILTRI--------LPSGGGDAENLQRILRLLTNYGVFSEHREF--G--GERKYSLTEIGKS 73 (301)
Q Consensus 7 ~~lglf~~L~~g~~t~~ela~~~--------~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~--~~~~y~~t~~s~~ 73 (301)
+++-|+..|..+|.+..+|++.+ ++ ++..+.+.|+-|...|+|+..... + ..-.|++|+.++.
T Consensus 3 l~~~iL~lL~~~~~~gyel~~~l~~~~~~~~~~----s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~ 77 (179)
T 1yg2_A 3 LPHVILTVLSTRDATGYDITKEFSASIGYFWKA----SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRS 77 (179)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHTTGGGGTCCC----CHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHH
T ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHhCCccCC----CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHH
Confidence 34556677777899999999999 46 688999999999999999865321 0 1125999999963
No 439
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=86.69 E-value=0.42 Score=33.94 Aligned_cols=54 Identities=22% Similarity=0.199 Sum_probs=40.1
Q ss_pred cccccc-ccCCC-CC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063 8 DGGKKG-RLANT-PL-SASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE 69 (301)
Q Consensus 8 ~lglf~-~L~~g-~~-t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 69 (301)
+..|.+ .+..| .+ |..+||+.+|+ ...-+++-|+.|...|++...+ +..|..++
T Consensus 21 ~~~I~~~~l~~g~~lps~~eLa~~~~v----Sr~tvr~al~~L~~~Gli~~~~----g~G~~v~~ 77 (102)
T 1v4r_A 21 RTLIKSGELAPGDTLPSVADIRAQFGV----AAKTVSRALAVLKSEGLVSSRG----ALGTVVEK 77 (102)
T ss_dssp HHHTTTTSCCTTSBCCCHHHHHHHSSS----CTTHHHHHTTTTTTSSCCEEET----TTEEESCS
T ss_pred HHHHHhCCCCCcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC----CCeEEEcc
Confidence 344555 44444 44 99999999999 6889999999999999998873 34455443
No 440
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=86.60 E-value=0.44 Score=42.57 Aligned_cols=53 Identities=19% Similarity=0.180 Sum_probs=45.8
Q ss_pred ccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063 8 DGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT 68 (301)
Q Consensus 8 ~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 68 (301)
+..|++.|..+|.++++|++++|+ +...+...|-.|.-.|++.+. .+++|+++
T Consensus 330 ~~~vl~~l~~~~~~~D~l~~~~gl----~~~~v~~~L~~LEl~G~v~~~----~Gg~~~~~ 382 (382)
T 3maj_A 330 RTRILALLGPSPVGIDDLIRLSGI----SPAVVRTILLELELAGRLERH----GGSLVSLS 382 (382)
T ss_dssp HHHHHHHCCSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHTTCCEEC----TTSEEEC-
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEeC----CCceEecC
Confidence 446888998889999999999999 788999999999999999998 47788764
No 441
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=86.47 E-value=0.22 Score=46.89 Aligned_cols=20 Identities=10% Similarity=0.026 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCCCCEEEEec
Q 043063 223 LIMENCYKAIPAGGKLIACE 242 (301)
Q Consensus 223 ~iL~~~~~aL~pgg~lli~e 242 (301)
.+++++.+.|+|||++.++-
T Consensus 376 ~Fl~~~l~~Lk~gGr~aiVl 395 (544)
T 3khk_A 376 AWMLHMLYHLAPTGSMALLL 395 (544)
T ss_dssp HHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHhccCceEEEEe
Confidence 58899999999999877664
No 442
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=86.04 E-value=1.3 Score=27.75 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI 70 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 70 (301)
..+|+.|+|+..++ .-...+.-|+-|.+.|-+.+. ..+|++.|-
T Consensus 17 QGMTaGEVAA~f~w----~Le~ar~aLeqLf~~G~LRKR-----sSRYrlkph 60 (68)
T 3i71_A 17 QGMTAGEVAAHFGW----PLEKARNALEQLFSAGTLRKR-----SSRYRLKPH 60 (68)
T ss_dssp TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----CCEEEECC-
T ss_pred ccccHHHHHHHhCC----cHHHHHHHHHHHHhcchhhhh-----ccccccCcc
Confidence 57899999999999 677888899999999999987 679998773
No 443
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=86.03 E-value=0.3 Score=35.89 Aligned_cols=64 Identities=16% Similarity=0.100 Sum_probs=48.4
Q ss_pred ccccccccCCCCCCHHHHHHHh------CCCCCCCcccHHHHHHHHhcCcceeccccc---c-CCCeEecChhchhhh
Q 043063 8 DGGKKGRLANTPLSASQILTRI------LPSGGGDAENLQRILRLLTNYGVFSEHREF---G-GERKYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~~g~~t~~ela~~~------~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~---~-~~~~y~~t~~s~~l~ 75 (301)
++=|+..|.++|.+--+|++.+ ++ ++..+...|+-|...|+|+..... + ..-.|++|+.++...
T Consensus 15 ~~~IL~lL~~~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l 88 (116)
T 3hhh_A 15 EGLVLAIIQRKETYGYEITKILNDQGFTEI----VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAEL 88 (116)
T ss_dssp HHHHHHHHHHSCBCHHHHHHHHHTTSCSSC----CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHH
Confidence 4445666777899999999998 56 788999999999999999875311 0 112599999987544
No 444
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=86.01 E-value=0.7 Score=38.07 Aligned_cols=47 Identities=15% Similarity=0.297 Sum_probs=41.3
Q ss_pred CHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063 21 SASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV 75 (301)
Q Consensus 21 t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 75 (301)
+..+||+.+++ ++..+.+.++.|...|++.+.+ ...+.+|+.++.+.
T Consensus 26 ~~~~la~~l~v----s~~tvs~~l~~Le~~GlV~r~~----~~~v~LT~~G~~~~ 72 (226)
T 2qq9_A 26 LRARIAERLEQ----SGPTVSQTVARMERDGLVVVAS----DRSLQMTPTGRTLA 72 (226)
T ss_dssp BHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECT----TSBEEECHHHHHHH
T ss_pred cHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEeC----CCCeEECHHHHHHH
Confidence 55999999999 7899999999999999999983 56799999987654
No 445
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=85.72 E-value=0.17 Score=37.23 Aligned_cols=66 Identities=14% Similarity=0.232 Sum_probs=49.4
Q ss_pred cccccccccCCCCCCHHHHHHHhC------CCCCCCcccHHHHHHHHhcCcceeccccc---c-CCCeEecChhchhhhc
Q 043063 7 RDGGKKGRLANTPLSASQILTRIL------PSGGGDAENLQRILRLLTNYGVFSEHREF---G-GERKYSLTEIGKSLVT 76 (301)
Q Consensus 7 ~~lglf~~L~~g~~t~~ela~~~~------~~~~~~~~~l~~lL~~L~~~g~l~~~~~~---~-~~~~y~~t~~s~~l~~ 76 (301)
+++-|+..|..+|.+.-+|++.+. + .+..+...|+.|...|+|+..... + ..-.|++|+.++....
T Consensus 15 l~~~IL~lL~~~p~~gyel~~~l~~~~~~~i----~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~ 90 (117)
T 3elk_A 15 ITLYILKELVKRPMHGYELQKSMFETTGQAL----PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLC 90 (117)
T ss_dssp HHHHHHHHHHHSCEEHHHHHHHHHHHHSCCC----CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHH
Confidence 345566777778999999998886 6 578999999999999999866320 0 1125999999975443
No 446
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=85.44 E-value=0.36 Score=37.16 Aligned_cols=64 Identities=17% Similarity=0.277 Sum_probs=45.3
Q ss_pred cccccccccccCC---CCCCHHHHHHHhCCCCC-CCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063 5 ECRDGGKKGRLAN---TPLSASQILTRILPSGG-GDAENLQRILRLLTNYGVFSEHREFGGERKYSLT 68 (301)
Q Consensus 5 ~a~~lglf~~L~~---g~~t~~ela~~~~~~~~-~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 68 (301)
|..+.-|++.|.+ ++.|++||.+.+.-..| -+..-+.|.|+.|+..|++.+...+++..+|.++
T Consensus 16 T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 83 (150)
T 2w57_A 16 TLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVFELS 83 (150)
T ss_dssp CHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECGGGCEEEEEC
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEec
Confidence 5566778888864 58999999999832111 0577899999999999999987421122357653
No 447
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=85.33 E-value=0.19 Score=35.22 Aligned_cols=47 Identities=6% Similarity=0.034 Sum_probs=39.6
Q ss_pred ccccccccccCC---CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 6 CRDGGKKGRLAN---TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 6 a~~lglf~~L~~---g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.-++.|+..|.. ..++..+|++++++ +..-+.+.|+.|...|+|.+.
T Consensus 20 ~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l----~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 20 NQEKLVYQIIEDAGNKGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp SSHHHHHHHHHHHCTTCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 445567777763 37899999999999 899999999999999999955
No 448
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=85.22 E-value=0.32 Score=35.67 Aligned_cols=64 Identities=22% Similarity=0.227 Sum_probs=47.6
Q ss_pred ccccccccCCCCCCHHHHHHHh--------CCCCCCCcccHHHHHHHHhcCcceecccc---cc-CCCeEecChhchhhh
Q 043063 8 DGGKKGRLANTPLSASQILTRI--------LPSGGGDAENLQRILRLLTNYGVFSEHRE---FG-GERKYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~~g~~t~~ela~~~--------~~~~~~~~~~l~~lL~~L~~~g~l~~~~~---~~-~~~~y~~t~~s~~l~ 75 (301)
++=|+..|.++|.+--+|.+.+ ++ ++..+...|+.|...|+|+.... ++ ..-.|++|+.++...
T Consensus 14 ~~~IL~~L~~~~~~Gyei~~~l~~~~~~~~~i----~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l 89 (116)
T 3f8b_A 14 NVILLNVLKQGDNYVYGIIKQVKEASNGEMEL----NEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENM 89 (116)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHHHHTTTCCCC----CHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHhCCCCCC----CcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHH
Confidence 3345566767899999999887 56 78899999999999999997531 11 112599999987644
No 449
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=85.04 E-value=0.22 Score=37.68 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=42.3
Q ss_pred ccccccccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 4 NECRDGGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 4 ~~a~~lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
-+..+..|+..|.. ++.|..+|++.++...+.++..+.++|+-|...|+|.+.+
T Consensus 7 lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 34556777888853 7899999999998210016889999999999999999874
No 450
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=84.98 E-value=2.5 Score=36.25 Aligned_cols=90 Identities=17% Similarity=0.184 Sum_probs=52.0
Q ss_pred HHhhhcCCCCCCcceEEeecCCce---------------eeeehhHHHhh----CCC--CCceeEEeC-CCCccCCc-cc
Q 043063 149 TSILDGYDGFKGVKRLVDVGGSAG---------------INFDLPEVVAE----APS--IPGVTHIGG-DMFKSIPA-AD 205 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dlp~v~~~----a~~--~~ri~~~~g-d~~~~~p~-~D 205 (301)
.++.+.+. +....+||||||+.| +.+|+-..-.. .++ ..-|.|+.+ |++.--|. .|
T Consensus 84 ~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~D 162 (321)
T 3lkz_A 84 RWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECCD 162 (321)
T ss_dssp HHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCCS
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCCC
Confidence 44555553 677789999999995 34555111000 011 134889998 87654333 58
Q ss_pred EeeHhhhhccCChH--H---HHHHHHHHHHhCCCC-CEEEE
Q 043063 206 AIFMKWVLTTWTDD--E---CKLIMENCYKAIPAG-GKLIA 240 (301)
Q Consensus 206 ~v~~~~vlh~~~d~--~---~~~iL~~~~~aL~pg-g~lli 240 (301)
+++|--. .--+.. + ..++|.-+-+.|+++ |-+.|
T Consensus 163 ~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 163 TLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp EEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence 7776443 222221 2 234677777889888 76555
No 451
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=84.91 E-value=0.31 Score=35.82 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=48.5
Q ss_pred ccccccccCCCCCCHHHHHHHh------CCCCCCCcccHHHHHHHHhcCcceecccc---cc-CCCeEecChhchhhh
Q 043063 8 DGGKKGRLANTPLSASQILTRI------LPSGGGDAENLQRILRLLTNYGVFSEHRE---FG-GERKYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~~g~~t~~ela~~~------~~~~~~~~~~l~~lL~~L~~~g~l~~~~~---~~-~~~~y~~t~~s~~l~ 75 (301)
++=|+..|..+|.+.-+|++.+ ++ ++..+...|+.|...|+|+.... ++ ..-.|++|+.++...
T Consensus 13 ~~~IL~lL~~~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l 86 (117)
T 4esf_A 13 EGCVLEIISRRETYGYEITRHLNDLGFTEV----VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQEL 86 (117)
T ss_dssp HHHHHHHHHHSCBCHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHH
Confidence 3445666777899999999988 67 78999999999999999987631 10 112599999987544
No 452
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=84.83 E-value=0.61 Score=37.19 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=43.9
Q ss_pred ccccccccC-C-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcc-eeccccccCCCeEecChh
Q 043063 8 DGGKKGRLA-N-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGV-FSEHREFGGERKYSLTEI 70 (301)
Q Consensus 8 ~lglf~~L~-~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~-l~~~~~~~~~~~y~~t~~ 70 (301)
...|++.|. . ++.|..+||+.+|+ ..+-+++-++.|...|+ +... .+.|.+++.
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~l~v----S~~Ti~rdi~~L~~~G~~I~~~-----~~Gy~l~~~ 79 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVAT-----PRGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEEE-----TTEEECCTT
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEE-----CCEEEECCc
Confidence 345777785 3 56999999999999 69999999999999999 7665 467888764
No 453
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=84.42 E-value=0.57 Score=38.64 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVT 76 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~ 76 (301)
++.|..++|+++++ .+..+.+.++.|...|+|.+.... ....+++|+.++.+..
T Consensus 26 ~~~s~s~aA~~L~i----sq~avSr~I~~LE~~~L~~R~~~~-R~~~v~LT~~G~~l~~ 79 (230)
T 3cta_A 26 AYLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTVTK-RGQILNITEKGLDVLY 79 (230)
T ss_dssp EECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECHHHHHHHH
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEEcC-CeEEEEECHHHHHHHH
Confidence 45889999999999 788999999999999999987311 1346889998876653
No 454
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=84.42 E-value=0.56 Score=37.71 Aligned_cols=35 Identities=20% Similarity=0.148 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
-|.|..|||+++|+ ....+.+.|+.|...|++.+.
T Consensus 23 ~~~s~~eia~~lgl----~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 23 YPPSVREIARRFRI----TPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC
T ss_pred CCCCHHHHHHHcCC----CcHHHHHHHHHHHHCCCEEec
Confidence 37899999999999 566899999999999999987
No 455
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=84.35 E-value=0.58 Score=51.97 Aligned_cols=81 Identities=16% Similarity=0.113 Sum_probs=30.3
Q ss_pred ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHH
Q 043063 204 ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQ 283 (301)
Q Consensus 204 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~ 283 (301)
+|+|+++++||.-++. ...|+++++.|+|||++++.+......-...+ .+++..- ..++...+.++|.+
T Consensus 1312 ydlvia~~vl~~t~~~--~~~l~~~~~lL~p~G~l~~~e~~~~~~~g~~~-----~~~~~~~----r~~~~~~~~~~w~~ 1380 (2512)
T 2vz8_A 1312 ADLLVCNCALATLGDP--AVAVGNMAATLKEGGFLLLHTLLAGHPLGEMV-----GFLTSPE----QGGRHLLSQDQWES 1380 (2512)
T ss_dssp CCEEEEECC----------------------CCEEEEEEC-----------------------------------CTTTT
T ss_pred eeEEEEcccccccccH--HHHHHHHHHhcCCCcEEEEEeccccccccccc-----ccccccc----ccCCcccCHHHHHH
Confidence 4999999999976654 47899999999999999998754311000000 0000000 01122347788999
Q ss_pred HHHhCCCCceEE
Q 043063 284 LGFSAGFPHLRL 295 (301)
Q Consensus 284 ~l~~aGf~~~~~ 295 (301)
+|.++||..+..
T Consensus 1381 ~l~~~gf~~~~~ 1392 (2512)
T 2vz8_A 1381 LFAGASLHLVAL 1392 (2512)
T ss_dssp SSTTTTEEEEEE
T ss_pred HHHhCCCceeee
Confidence 999999977654
No 456
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=84.25 E-value=0.31 Score=37.50 Aligned_cols=60 Identities=22% Similarity=0.223 Sum_probs=44.8
Q ss_pred cccccccccccC--CCCCCHHHHHHHh-----CCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063 5 ECRDGGKKGRLA--NTPLSASQILTRI-----LPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT 68 (301)
Q Consensus 5 ~a~~lglf~~L~--~g~~t~~ela~~~-----~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 68 (301)
|..+.-|++.|. .++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+....++..+|..+
T Consensus 26 T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 92 (150)
T 2xig_A 26 SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNT----SISSVYRILNFLEKENFISVLETSKSGRRYEIA 92 (150)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEETTTEEEEEES
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCcEEEEEeCCCceEEEec
Confidence 455667888885 3689999999998 55 677999999999999999987422122347653
No 457
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=84.10 E-value=0.26 Score=35.17 Aligned_cols=39 Identities=10% Similarity=0.000 Sum_probs=31.0
Q ss_pred ccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHh
Q 043063 6 CRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLT 48 (301)
Q Consensus 6 a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~ 48 (301)
+.++||+..|.+|+.|..|||+.+|+ ....+.|+=++|.
T Consensus 45 ~~R~~l~~~L~~ge~TQREIA~~lGi----S~stISRi~r~L~ 83 (101)
T 1jhg_A 45 GTRVRIIEELLRGEMSQRELKNELGA----GIATITRGSNSLK 83 (101)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHCC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCC----ChhhhhHHHHHHH
Confidence 45789999998888999999999999 5666666655553
No 458
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=83.43 E-value=0.3 Score=35.80 Aligned_cols=65 Identities=9% Similarity=0.111 Sum_probs=48.8
Q ss_pred cccccccccCCCCCCHHHHHHHhC------CCCCCCcccHHHHHHHHhcCcceeccccccCC----CeEecChhchhhh
Q 043063 7 RDGGKKGRLANTPLSASQILTRIL------PSGGGDAENLQRILRLLTNYGVFSEHREFGGE----RKYSLTEIGKSLV 75 (301)
Q Consensus 7 ~~lglf~~L~~g~~t~~ela~~~~------~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~----~~y~~t~~s~~l~ 75 (301)
+++-|+..|..+|.+--+|++.+. + ++..+...|+.|...|+|+......++ -.|++|+.++...
T Consensus 10 l~~~IL~~L~~~~~~Gyei~~~l~~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l 84 (115)
T 4esb_A 10 LEGCILYIISQEEVYGYELSTKLNKHGFTFV----SEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQL 84 (115)
T ss_dssp HHHHHHHHHHHSCEEHHHHHHHHHHTTCTTC----CHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHcCCCCC----CcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHH
Confidence 344566677778999999999885 6 788999999999999999875311011 2499999987644
No 459
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=83.06 E-value=0.18 Score=37.27 Aligned_cols=53 Identities=9% Similarity=0.118 Sum_probs=41.4
Q ss_pred cccccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 5 ECRDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 5 ~a~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
+..+..++..|.. +|.|..+|++.++...+.++..+.++|+-|...|+|.+.+
T Consensus 9 t~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 9 SMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp CHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 4456667777764 7899999999997310115789999999999999999884
No 460
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=82.87 E-value=0.24 Score=43.74 Aligned_cols=61 Identities=11% Similarity=0.082 Sum_probs=0.0
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcC
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTD 77 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~ 77 (301)
+..|+..|.. ++.|..+||+.+++ ++.-++|.|+.|...|++.+. .....+|+.++.+...
T Consensus 22 ~~~iL~~l~~~~~~t~~eLa~~l~v----s~~Tv~r~l~~Le~~Glv~~~-----~~gi~LT~~G~~~~~~ 83 (345)
T 2o0m_A 22 RFQILRNIYWMQPIGRRSLSETMGI----TERVLRTETDVLKQLNLIEPS-----KSGMTLTERGLEVYQG 83 (345)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE-----ecceEEcHHHHHHHHH
Confidence 3456777764 78999999999999 788999999999999999855 2347788888765543
No 461
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=82.64 E-value=0.35 Score=40.67 Aligned_cols=64 Identities=9% Similarity=0.073 Sum_probs=48.5
Q ss_pred cccccccccCC-C--CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhh
Q 043063 7 RDGGKKGRLAN-T--PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLV 75 (301)
Q Consensus 7 ~~lglf~~L~~-g--~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~ 75 (301)
.++.++..|.. + +.|..+||+.+++ ++..+.++++-|...|+|.+.+.. .+. ...+|+.++.+.
T Consensus 159 ~q~~vL~~L~~~~~~~~t~~eLa~~l~i----~~~tvt~~v~rLe~~GlV~R~~~~-~DrR~~~i~LT~~G~~~~ 228 (250)
T 1p4x_A 159 VEFTILAIITSQNKNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKERST-EDERKILIHMDDAQQDHA 228 (250)
T ss_dssp HHHHHHHHHHTTTTCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEECS-SSTTCEEEECCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeCCC-CCCCeEEEEECHHHHHHH
Confidence 34455666653 2 5899999999999 899999999999999999987532 111 467788876654
No 462
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=82.52 E-value=0.98 Score=38.85 Aligned_cols=81 Identities=17% Similarity=0.200 Sum_probs=46.9
Q ss_pred CCCcceEEeecCCc------e------------ee--eehhHHHhhCCCCCceeEEeCCCCcc-CCc-ccEeeHhh----
Q 043063 158 FKGVKRLVDVGGSA------G------------IN--FDLPEVVAEAPSIPGVTHIGGDMFKS-IPA-ADAIFMKW---- 211 (301)
Q Consensus 158 ~~~~~~vlDvGgG~------g------------~~--~Dlp~v~~~a~~~~ri~~~~gd~~~~-~p~-~D~v~~~~---- 211 (301)
.....+|||+|+|+ | ++ .|+.++...+ . .++.||..+. ... .|+|+.=.
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~sda----~-~~IqGD~~~~~~~~k~DLVISDMAPNt 181 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVSDA----D-STLIGDCATVHTANKWDLIISDMYDPR 181 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBCSS----S-EEEESCGGGEEESSCEEEEEECCCCTT
T ss_pred ecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCcccccCC----C-eEEEccccccccCCCCCEEEecCCCCc
Confidence 34678999999866 1 22 3443333221 1 4488886544 222 47665321
Q ss_pred ---hhccC--ChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 212 ---VLTTW--TDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 212 ---vlh~~--~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
+-++- +..-+..+|.=+.+.|+|||.+++-=+
T Consensus 182 TG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVF 218 (344)
T 3r24_A 182 TKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 218 (344)
T ss_dssp SCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEe
Confidence 11111 222366778888899999999987644
No 463
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=82.37 E-value=0.72 Score=39.41 Aligned_cols=51 Identities=29% Similarity=0.397 Sum_probs=38.0
Q ss_pred hHHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC--CCceeEEeCCCCc
Q 043063 148 MTSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS--IPGVTHIGGDMFK 199 (301)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~--~~ri~~~~gd~~~ 199 (301)
.+++++.+. ..+...+||.+||.| +++|. |..++.+++ .+|++++.+||.+
T Consensus 11 l~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~ 77 (285)
T 1wg8_A 11 YQEALDLLA-VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH 77 (285)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred HHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence 456666664 777789999999995 67898 777755432 2699999999864
No 464
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=82.37 E-value=0.68 Score=33.05 Aligned_cols=44 Identities=25% Similarity=0.207 Sum_probs=36.5
Q ss_pred cccccccCCC-CC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 9 GGKKGRLANT-PL-SASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 9 lglf~~L~~g-~~-t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
..|+..|..| .+ |..+||+.+|+ ...-+++-|+.|...|+|...
T Consensus 31 ~~I~~~l~~g~~lps~~eLa~~lgV----Sr~tVr~al~~L~~~GlI~~~ 76 (102)
T 2b0l_A 31 EHIFEELDGNEGLLVASKIADRVGI----TRSVIVNALRKLESAGVIESR 76 (102)
T ss_dssp HHHTTSSBTTEEEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhhhcCCCcCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3455566544 45 99999999999 688999999999999999877
No 465
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=81.79 E-value=1 Score=34.00 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=31.7
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
..|.++||+++|+ ++..+.+.|..|...|+|...
T Consensus 51 ~ps~~~LA~~~~~----s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 51 FPTPNQLQEGMSI----SVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp SCCHHHHHTTSSS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 4699999999999 899999999999999999984
No 466
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=81.65 E-value=1.1 Score=39.05 Aligned_cols=56 Identities=21% Similarity=0.132 Sum_probs=45.3
Q ss_pred cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063 7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE 69 (301)
Q Consensus 7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 69 (301)
.+..|++.|.+ ++.|.++||+++++ .+..++|-|+.|...|++.+.. .+..|++.+
T Consensus 6 r~~~Il~~L~~~~~~s~~eLa~~l~v----S~~ti~r~l~~L~~~G~~i~~~---~g~GY~l~~ 62 (321)
T 1bia_A 6 VPLKLIALLANGEFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFTV---PGKGYSLPE 62 (321)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEEE---TTTEEECSS
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCcEEEe---cCCCcEEee
Confidence 35567888876 67999999999999 6999999999999999986543 244788864
No 467
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=80.53 E-value=0.71 Score=38.32 Aligned_cols=53 Identities=9% Similarity=0.061 Sum_probs=43.9
Q ss_pred cccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063 9 GGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE 69 (301)
Q Consensus 9 lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 69 (301)
.-|.-.|..|+.|.++||..+|+ ++.-+...|.-|...|++.+. .+++..+..
T Consensus 168 ~~l~~~l~~~~~t~~~la~~~~l----~~~~V~~~l~~L~~~~~v~~~----~~~~~~~~~ 220 (232)
T 2qlz_A 168 AILHYLLLNGRATVEELSDRLNL----KEREVREKISEMARFVPVKII----NDNTVVLDE 220 (232)
T ss_dssp HHHHHHHHSSEEEHHHHHHHHTC----CHHHHHHHHHHHTTTSCEEEE----TTTEEEECH
T ss_pred HHHHHHHhcCCCCHHHHHHHhCc----CHHHHHHHHHHHHhcCCeEEe----cCCeEEecH
Confidence 33445566789999999999999 799999999999999999876 367776654
No 468
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=79.35 E-value=0.54 Score=35.88 Aligned_cols=64 Identities=19% Similarity=0.240 Sum_probs=45.1
Q ss_pred cccccccccccCC-CCCCHHHHHHHhCCCCCC-CcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063 5 ECRDGGKKGRLAN-TPLSASQILTRILPSGGG-DAENLQRILRLLTNYGVFSEHREFGGERKYSLT 68 (301)
Q Consensus 5 ~a~~lglf~~L~~-g~~t~~ela~~~~~~~~~-~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 68 (301)
|..+.-|++.|.+ ++.|+++|.+.+.-..|. +..-+.|.|+.|+..|++.+...+++..+|.+.
T Consensus 18 T~qR~~Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y~~~ 83 (145)
T 3eyy_A 18 TPQRQLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGHGAPTYHLA 83 (145)
T ss_dssp CHHHHHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEEET
T ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEEEeC
Confidence 5567778888864 588999999988432221 567899999999999999987422122356643
No 469
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=78.43 E-value=1.1 Score=29.18 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=38.8
Q ss_pred ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
+-.|++.|.. ||.++-.||+.+|+. ...-+.+.|..|...|+|..+
T Consensus 12 ee~I~~fL~~~Gp~~AL~IAK~LGlk---tAK~VNp~LY~m~~~~lL~~D 58 (72)
T 3eyi_A 12 EEDIYRFLKDNGPQRALVIAQALGMR---TAKDVNRDLYRMKSRHLLDMD 58 (72)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHTTCC---SGGGTHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHcCCchHHHHHHHhCcc---hhhhcCHHHHHHHHccCcCCC
Confidence 3457888875 999999999999993 455699999999999999766
No 470
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=78.16 E-value=0.94 Score=30.47 Aligned_cols=37 Identities=11% Similarity=0.185 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 17 NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
.+..++.++|+.++.. ..+++..++.+|.++|++++.
T Consensus 28 ~~~i~l~~aa~~L~v~---~kRRiYDI~NVLe~igli~K~ 64 (76)
T 1cf7_A 28 DGVLDLKLAADTLAVR---QKRRIYDITNVLEGIGLIEKK 64 (76)
T ss_dssp TTEEEHHHHHHHTTTC---CTHHHHHHHHHHHHHTSEEEE
T ss_pred CCcCcHHHHHHHhCCc---cceehhhHHHHHhHhcceeec
Confidence 3678999999999982 478999999999999999987
No 471
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=77.99 E-value=2.3 Score=30.87 Aligned_cols=61 Identities=10% Similarity=0.088 Sum_probs=45.9
Q ss_pred cccccCCCCCCHHHHHHHh-------CCCCCCCcccHHHHHHHHhcCcceeccccc----c-CCCeEecChhchhhh
Q 043063 11 KKGRLANTPLSASQILTRI-------LPSGGGDAENLQRILRLLTNYGVFSEHREF----G-GERKYSLTEIGKSLV 75 (301)
Q Consensus 11 lf~~L~~g~~t~~ela~~~-------~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~----~-~~~~y~~t~~s~~l~ 75 (301)
|+..|.++|.+--+|.+.+ ++ ++..+...|+-|...|+|+..... + ..-.|++|+.++...
T Consensus 27 IL~lL~~~~~~Gyei~~~l~~~~~~~~i----s~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l 99 (115)
T 2dql_A 27 ILYVLLQGESYGTELIQQLETEHPTYRL----SDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQA 99 (115)
T ss_dssp HHHHHTTSCBCHHHHHHHHHHHCTTEEC----CHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHcCCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHHH
Confidence 6667777899888887776 35 688999999999999999875321 0 112499999987544
No 472
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=77.13 E-value=2.9 Score=30.19 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=34.2
Q ss_pred CHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063 21 SASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE 69 (301)
Q Consensus 21 t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 69 (301)
|..+||+.+|+ +..-+++-|+.|...|+|...+ +..|..++
T Consensus 35 s~~~La~~~~v----Sr~tvr~al~~L~~~Gli~~~~----~~G~~V~~ 75 (113)
T 3tqn_A 35 SIRKISTEYQI----NPLTVSKAYQSLLDDNVIEKRR----GLGMLVKA 75 (113)
T ss_dssp CHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET----TTEEEECT
T ss_pred CHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEec----CCeEEEeC
Confidence 89999999999 6889999999999999998873 33444444
No 473
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=76.90 E-value=1.3 Score=40.70 Aligned_cols=63 Identities=14% Similarity=0.142 Sum_probs=47.6
Q ss_pred ccccccccC-C--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhh
Q 043063 8 DGGKKGRLA-N--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLV 75 (301)
Q Consensus 8 ~lglf~~L~-~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~ 75 (301)
+..++..|. . +++|..+||+.+++ ++..+.++|+.|...|+|.+.+.. .+. ...+|+.++.+.
T Consensus 406 q~~vl~~l~~~~~~~~~~~~l~~~~~~----~~~~~t~~~~~le~~g~v~r~~~~-~D~R~~~i~lT~~g~~~~ 474 (487)
T 1hsj_A 406 EIYILNHILRSESNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKRSL-QDERTVIVYVTDTQKANI 474 (487)
T ss_dssp HHHHHHHHHTCSCSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEECC-SSSSCCEEECCSSHHHHH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCC-CCCCeEEEEECHHHHHHH
Confidence 344555664 3 67999999999999 899999999999999999987532 121 467777776554
No 474
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=76.67 E-value=1.1 Score=42.57 Aligned_cols=58 Identities=9% Similarity=0.051 Sum_probs=48.3
Q ss_pred cccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhc-----CcceeccccccCCCeEecChhchhhh
Q 043063 9 GGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTN-----YGVFSEHREFGGERKYSLTEIGKSLV 75 (301)
Q Consensus 9 lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~-----~g~l~~~~~~~~~~~y~~t~~s~~l~ 75 (301)
.-|++.|.. +.+|..+|++.+++ ++..+++.|+.|.. .|+++.. ++.|.+++......
T Consensus 433 ~~iL~~l~~~~~it~~~la~~l~~----s~~~~~~~L~~L~~~~~~~~glie~~-----g~~y~L~~~~~~~~ 496 (583)
T 3lmm_A 433 AIVLYLLFQRPFITIDVVARGLQS----GKEAARNALEAARQTTVAGAPLIIAH-----DGVWLLGNACREIL 496 (583)
T ss_dssp HHHHHHHHHSSSBCHHHHHHHHTS----CHHHHHHHHHHHHTCEETTEESEEEE-----TTEEEECHHHHHHH
T ss_pred HHHHHHHHHCCCcCHHHHHHHhCc----CHHHHHHHHHHHHhhhccccceEEEe-----CCEEEECHHHHHHh
Confidence 346666654 77999999999999 89999999999999 8999998 57899999765444
No 475
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=76.36 E-value=1 Score=40.41 Aligned_cols=45 Identities=11% Similarity=0.142 Sum_probs=39.0
Q ss_pred cccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 9 GGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 9 lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
..|++.|.. +++|..|||+.+|+ .+.-+.++++.|...|++.+.+
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~l----s~~tv~~~v~~L~~~g~i~~~~ 64 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQL----APASITKIVHEMLEAHLVQELE 64 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEC-
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEeec
Confidence 347777865 89999999999999 6889999999999999999853
No 476
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=76.14 E-value=0.89 Score=40.53 Aligned_cols=63 Identities=11% Similarity=0.199 Sum_probs=46.3
Q ss_pred ccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc----c-CCCeEecChhch
Q 043063 6 CRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF----G-GERKYSLTEIGK 72 (301)
Q Consensus 6 a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~----~-~~~~y~~t~~s~ 72 (301)
..+..|++.|..+++|..|||+.+|+ .+.-+.++++.|...|++.+.+.. | ..-.|++++.+.
T Consensus 20 ~~~~~il~~l~~~~~sr~~la~~~gl----s~~tv~~~v~~L~~~gli~~~~~~~~~~GR~~~~l~~~~~~~ 87 (380)
T 2hoe_A 20 ENISRILKRIMKSPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEEKDSPKGVGRPTKSLKISPNCA 87 (380)
T ss_dssp --CCCSHHHHHHSCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEECCC----CCCEEEEECGGGC
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeecCCCCCCCCCceEEEEccCCC
Confidence 33455777776679999999999999 688999999999999999986421 0 112367776654
No 477
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=76.02 E-value=3.6 Score=33.72 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=36.6
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE 69 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 69 (301)
+.|-.+||..+|+ .+..+.|.|+.|...|+++.. .+.+....
T Consensus 177 ~~t~~~iA~~lG~----sr~tvsR~l~~L~~~g~I~~~-----~~~i~i~d 218 (250)
T 3e6c_C 177 PLSQKSIGEITGV----HHVTVSRVLASLKRENILDKK-----KNKIIVYN 218 (250)
T ss_dssp CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC-----SSEEEESC
T ss_pred CCCHHHHHHHhCC----cHHHHHHHHHHHHHCCCeEeC-----CCEEEEec
Confidence 7899999999999 799999999999999999988 45555543
No 478
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=75.34 E-value=2.2 Score=34.49 Aligned_cols=59 Identities=24% Similarity=0.201 Sum_probs=45.8
Q ss_pred ccccccCCCCCCHHHHHHHh--------CCCCCCCcccHHHHHHHHhcCcceeccccc--cCC--CeEecChhch
Q 043063 10 GKKGRLANTPLSASQILTRI--------LPSGGGDAENLQRILRLLTNYGVFSEHREF--GGE--RKYSLTEIGK 72 (301)
Q Consensus 10 glf~~L~~g~~t~~ela~~~--------~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~--~~y~~t~~s~ 72 (301)
-|+..|.++|.+--||++.+ ++ ++..+...|+-|...|+|+..... +.+ -.|++|+.++
T Consensus 40 ~IL~lL~~~p~~GYeL~~~l~~~~~~~~~~----s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~~Gr 110 (204)
T 3l9f_A 40 IILGILSKKERSGYEINDILQNQLSYFYDG----TYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITESGK 110 (204)
T ss_dssp HHHHHTSSCCEEHHHHHHHHHHTSTTTEEC----CTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHhCCccCC----CcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEEEChHHH
Confidence 45566778999999999988 35 678999999999999999865321 111 2599999995
No 479
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=74.97 E-value=1.5 Score=38.33 Aligned_cols=56 Identities=11% Similarity=0.101 Sum_probs=44.2
Q ss_pred cccccccc--CC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063 8 DGGKKGRL--AN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI 70 (301)
Q Consensus 8 ~lglf~~L--~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 70 (301)
+..|++.| .+ .+.|.++||+++|+ ....+.+-++.|...|+.-+.. .+..|++.+.
T Consensus 5 ~~~iL~~L~~~~g~~~Sg~eLa~~lgv----Sr~aV~k~i~~L~~~G~~i~~~---~~~GY~L~~~ 63 (323)
T 3rkx_A 5 SQDVLQLLYKNKPNYISGQSIAESLNI----SRTAVKKVIDQLKLEGCKIDSV---NHKGHLLQQL 63 (323)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEEE---TTTEEEEEEC
T ss_pred HHHHHHHHHhCCCCccCHHHHHHHHCC----CHHHHHHHHHHHHhcCCeEEEe---CCCeEEEecC
Confidence 34577888 33 48999999999999 6899999999999999955532 2457988763
No 480
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=74.19 E-value=2.7 Score=33.15 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=36.8
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE 69 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 69 (301)
+.|-++||..+|+ .+..+.|.|+.|...|+++.. .+.+.+..
T Consensus 146 ~~t~~~lA~~lg~----sr~tvsR~l~~L~~~g~I~~~-----~~~i~i~d 187 (202)
T 2zcw_A 146 KATHDELAAAVGS----VRETVTKVIGELAREGYIRSG-----YGKIQLLD 187 (202)
T ss_dssp ECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTEEEESC
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeC-----CCEEEEeC
Confidence 5799999999999 799999999999999999987 56666644
No 481
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=74.15 E-value=2.7 Score=33.17 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=32.2
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
+.|-.+||..+|+ .+..+.|.|+.|...|+++..
T Consensus 164 ~~t~~~lA~~lg~----sr~tvsR~l~~l~~~g~I~~~ 197 (207)
T 2oz6_A 164 KITRQEIGRIVGC----SREMVGRVLKSLEEQGLVHVK 197 (207)
T ss_dssp ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEec
Confidence 6799999999999 799999999999999999987
No 482
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=74.08 E-value=2.3 Score=35.60 Aligned_cols=62 Identities=15% Similarity=0.106 Sum_probs=47.2
Q ss_pred cccccccCC---CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhh
Q 043063 9 GGKKGRLAN---TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLV 75 (301)
Q Consensus 9 lglf~~L~~---g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~ 75 (301)
..++..|.. ++.|..+||+.+++ ++..+.++|+-|...|+|.+.+.. .+. ...+|+.++.+.
T Consensus 37 ~~vL~~L~~~~~~~~~~~el~~~l~~----~~~t~t~~l~rLe~~G~i~R~~~~-~DrR~~~i~LT~~G~~~~ 104 (250)
T 1p4x_A 37 FILLTYLFHQQENTLPFKKIVSDLCY----KQSDLVQHIKVLVKHSYISKVRSK-IDERNTYISISEEQREKI 104 (250)
T ss_dssp HHHHHHHHSCSCSEEEHHHHHHHSSS----CGGGTHHHHHHHHHTTSCEEEECS-SSTTSEEEECCHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecCCC-CCCCeEEEEECHHHHHHH
Confidence 344555532 47899999999999 899999999999999999987532 121 467888886654
No 483
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=73.89 E-value=3.4 Score=32.95 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=36.8
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE 69 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 69 (301)
+.|-.+||..+|+ .+..+.|.|+.|...|+++.. .+.+.+..
T Consensus 169 ~~t~~~lA~~lg~----sr~tvsR~l~~L~~~g~I~~~-----~~~i~i~d 210 (220)
T 3dv8_A 169 KITHETIANHLGS----HREVITRMLRYFQVEGLVKLS-----RGKITILD 210 (220)
T ss_dssp CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTEEEESC
T ss_pred cCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeC-----CCEEEEeC
Confidence 7899999999999 799999999999999999887 56666543
No 484
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=73.51 E-value=1.2 Score=40.43 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=39.6
Q ss_pred cccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 9 GGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 9 lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
..|++.|.. +++|..|||+.+|+ .+.-+.++++.|...|++.+.+
T Consensus 42 ~~il~~l~~~~~~sr~ela~~~gl----s~~tv~~~v~~L~~~gli~~~~ 87 (429)
T 1z05_A 42 GRVYKLIDQKGPISRIDLSKESEL----APASITKITRELIDAHLIHETT 87 (429)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecc
Confidence 347777765 89999999999999 6889999999999999999874
No 485
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=73.39 E-value=2.8 Score=35.80 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=36.5
Q ss_pred CceeEEeCCCCccCCc-----ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063 188 PGVTHIGGDMFKSIPA-----ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP 243 (301)
Q Consensus 188 ~ri~~~~gd~~~~~p~-----~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~ 243 (301)
++|+++.||+.+.+|. .|++++=. +. -+.....|+.+...|+|||.|++-|.
T Consensus 189 ~~I~li~Gda~etL~~~~~~~~d~vfIDa---D~-y~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 189 EQVRFLPGWFKDTLPTAPIDTLAVLRMDG---DL-YESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp TTEEEEESCHHHHSTTCCCCCEEEEEECC---CS-HHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred CceEEEEeCHHHHHhhCCCCCEEEEEEcC---Cc-cccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 7999999999764443 26655443 11 12356889999999999997776664
No 486
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=73.36 E-value=1.9 Score=32.98 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=45.0
Q ss_pred cccccCCCCCCHHHHHHHh-------CCCCCCCcccHHHHHHHHhcCcceeccccc----c-CCCeEecChhchhh
Q 043063 11 KKGRLANTPLSASQILTRI-------LPSGGGDAENLQRILRLLTNYGVFSEHREF----G-GERKYSLTEIGKSL 74 (301)
Q Consensus 11 lf~~L~~g~~t~~ela~~~-------~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~----~-~~~~y~~t~~s~~l 74 (301)
|+..|..+|.+--+|.+.+ ++ ++..+...|+.|...|+|+..... + ..-.|++|+.++..
T Consensus 49 IL~lL~~~p~~GYeI~k~l~~~~~~~~i----s~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~ 120 (148)
T 2zfw_A 49 VLAVLRHEDSYGTELIQHLETHWPNYRL----SDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDR 120 (148)
T ss_dssp HHHHHTTCCEEHHHHHHHHHHHCTTEEC----CSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCST
T ss_pred HHHHHHhCCCcHHHHHHHHHHHcCCCCC----ChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHHHHH
Confidence 5667777899888888777 36 688999999999999999875311 0 11259999987643
No 487
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=72.73 E-value=3.8 Score=33.02 Aligned_cols=42 Identities=24% Similarity=0.453 Sum_probs=36.7
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE 69 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 69 (301)
+.|-.+||..+|+ .+..+.|.|+.|...|+++.. .+.+....
T Consensus 175 ~~t~~~iA~~lg~----sr~tvsR~l~~L~~~g~I~~~-----~~~i~i~d 216 (231)
T 3e97_A 175 PLGTQDIMARTSS----SRETVSRVLKRLEAHNILEVS-----PRSVTLLD 216 (231)
T ss_dssp CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC-----SSCEEESC
T ss_pred CCCHHHHHHHhCC----cHHHHHHHHHHHHHCCcEEec-----CCEEEEeC
Confidence 6899999999999 799999999999999999987 45665543
No 488
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=72.72 E-value=0.87 Score=28.51 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=36.9
Q ss_pred ccccccccC--CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceec
Q 043063 8 DGGKKGRLA--NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSE 55 (301)
Q Consensus 8 ~lglf~~L~--~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~ 55 (301)
|-.|++++. +|-+.++.+++..|+ .+.-+-.+|+.|.+.|++.-
T Consensus 12 e~~lL~yIr~sGGildI~~~a~kygV----~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 12 ERELLDYIVNNGGFLDIEHFSKVYGV----EKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHHHTTSEEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCEEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeec
Confidence 344667775 367899999999999 79999999999999999864
No 489
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=72.37 E-value=3.8 Score=33.04 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063 18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE 69 (301)
Q Consensus 18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 69 (301)
-+.|-.+||..+|+ .+..+.|.|+.|...|+++.. .+.+.+..
T Consensus 179 ~~~t~~~lA~~lg~----sr~tvsR~l~~l~~~g~I~~~-----~~~i~i~d 221 (232)
T 2gau_A 179 IYLSREELATLSNM----TVSNAIRTLSTFVSERMLALD-----GKRIKIID 221 (232)
T ss_dssp CCCCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEE-----TTEEEESC
T ss_pred cccCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEeeC-----CCEEEEeC
Confidence 37899999999999 799999999999999999987 45665543
No 490
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=72.26 E-value=4.2 Score=29.88 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=30.7
Q ss_pred CHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063 21 SASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR 57 (301)
Q Consensus 21 t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 57 (301)
|..+||+.+|+ +..-+++-|..|...|+|...+
T Consensus 39 s~~~La~~~~v----Sr~tvr~Al~~L~~~G~i~~~~ 71 (125)
T 3neu_A 39 SVREMGVKLAV----NPNTVSRAYQELERAGYIYAKR 71 (125)
T ss_dssp CHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET
T ss_pred CHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEec
Confidence 69999999999 7889999999999999999873
No 491
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=72.21 E-value=3.2 Score=32.76 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=32.3
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
+.|-.+||..+|+ .+..+.|.|+.|...|+++..
T Consensus 167 ~~t~~~iA~~lg~----sr~tvsR~l~~L~~~g~I~~~ 200 (210)
T 3ryp_A 167 KITRQEIGQIVGC----SRETVGRILKMLEDQNLISAH 200 (210)
T ss_dssp ECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHhCC----cHHHHHHHHHHHHHCCcEEeC
Confidence 6899999999999 799999999999999999987
No 492
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=72.03 E-value=3.2 Score=33.32 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=32.2
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH 56 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 56 (301)
|.|-++||..+|+ .+..+.|.|+.|...|+++..
T Consensus 187 ~lt~~~lA~~lg~----sr~tvsR~l~~L~~~g~I~~~ 220 (230)
T 3iwz_A 187 RVSRQELARLVGC----SREMAGRVLKKLQADGLLHAR 220 (230)
T ss_dssp ECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCC----cHHHHHHHHHHHHHCCCEEEC
Confidence 5799999999999 799999999999999999987
No 493
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=71.85 E-value=4.9 Score=29.78 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=35.6
Q ss_pred CC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063 19 PL-SASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI 70 (301)
Q Consensus 19 ~~-t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 70 (301)
.+ |..+||+.+|+ +..-+++-|+.|...|++...+ +..+..++.
T Consensus 27 ~LPse~~La~~~gv----Sr~tVr~Al~~L~~~Gli~~~~----g~G~~V~~~ 71 (129)
T 2ek5_A 27 RVPSTNELAAFHRI----NPATARNGLTLLVEAGILYKKR----GIGMFVSAQ 71 (129)
T ss_dssp CBCCHHHHHHHTTC----CHHHHHHHHHHHHTTTSEEEET----TTEEEECTT
T ss_pred cCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEec----CCEEEEecC
Confidence 44 89999999999 6889999999999999999873 334444443
No 494
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=71.71 E-value=4.1 Score=32.67 Aligned_cols=42 Identities=12% Similarity=0.193 Sum_probs=36.7
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE 69 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 69 (301)
+.|-.+||..+|+ .+..+.|.|+.|...|+++.. .+.+.+..
T Consensus 177 ~~t~~~lA~~lg~----sr~tvsR~l~~l~~~g~I~~~-----~~~i~i~d 218 (227)
T 3d0s_A 177 DLTQEEIAQLVGA----SRETVNKALADFAHRGWIRLE-----GKSVLISD 218 (227)
T ss_dssp CCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE-----TTEEEESC
T ss_pred CCCHHHHHHHhCC----cHHHHHHHHHHHHHCCCEEec-----CCEEEEcC
Confidence 6899999999999 799999999999999999987 55665543
No 495
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=71.47 E-value=4 Score=33.33 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=36.2
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT 68 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 68 (301)
+.|-.+||..+|+ .+..+.|.|+.|...|+++.. .+.+.+.
T Consensus 193 ~lt~~~lA~~lG~----sr~tvsR~l~~L~~~GlI~~~-----~~~i~I~ 233 (243)
T 3la7_A 193 KLSHQAIAEAIGS----TRVTVTRLLGDLREKKMISIH-----KKKITVH 233 (243)
T ss_dssp CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTEEEEC
T ss_pred cCCHHHHHHHHCC----cHHHHHHHHHHHHHCCCEEEc-----CCEEEEC
Confidence 6899999999999 799999999999999999987 5566554
No 496
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=71.40 E-value=3.5 Score=32.70 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=36.7
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE 69 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 69 (301)
+.|..+||..+|+ .+..+.|.|+.|...|+++.. .+.+.+..
T Consensus 163 ~~t~~~lA~~lg~----sr~tvsR~l~~l~~~g~I~~~-----~~~i~i~d 204 (216)
T 4ev0_A 163 QIRHHELAALAGT----SRETVSRVLHALAEEGVVRLG-----PGTVEVRE 204 (216)
T ss_dssp ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE-----TTEEEESC
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEec-----CCEEEEeC
Confidence 6799999999999 799999999999999999987 55666543
No 497
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=70.99 E-value=2.7 Score=31.02 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=48.3
Q ss_pred cccccccccCCCCCCHHHHHHHh-----CCCCCCCcccHHHHHHHHhcCcceeccccc--c-CCCeEecChhchhhh
Q 043063 7 RDGGKKGRLANTPLSASQILTRI-----LPSGGGDAENLQRILRLLTNYGVFSEHREF--G-GERKYSLTEIGKSLV 75 (301)
Q Consensus 7 ~~lglf~~L~~g~~t~~ela~~~-----~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~-~~~~y~~t~~s~~l~ 75 (301)
+++=|+..|. +|.+--+|.+.+ ++ ++..+..+|+-|...|+|+..... + ..-.|++|+.++...
T Consensus 22 l~~~IL~lL~-~p~~GYei~~~l~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l 93 (123)
T 3ri2_A 22 LVMLVLSQLR-EPAYGYALVKSLADHGIPI----EANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVL 93 (123)
T ss_dssp HHHHHHHHTT-SCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHHH
Confidence 3455677788 899998998885 66 789999999999999999876311 0 112599999987544
No 498
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=70.72 E-value=2.1 Score=33.21 Aligned_cols=64 Identities=16% Similarity=0.094 Sum_probs=43.2
Q ss_pred cccccccccccCC--CCCCHHHHHHHhCCC--CC-CCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063 5 ECRDGGKKGRLAN--TPLSASQILTRILPS--GG-GDAENLQRILRLLTNYGVFSEHREFGGERKYSLT 68 (301)
Q Consensus 5 ~a~~lglf~~L~~--g~~t~~ela~~~~~~--~~-~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 68 (301)
|..+.-|++.|.+ ++.|++||.+.+.-. .| -+..-+.|.|+.|+..|++.+...++...+|..+
T Consensus 32 T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~~~~~~~~Y~~~ 100 (162)
T 4ets_A 32 TKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELA 100 (162)
T ss_dssp CHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC-----CCEEEC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCceEEEeC
Confidence 5566778888854 689999998876321 11 1567889999999999999987321122357654
No 499
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=70.27 E-value=2.7 Score=31.75 Aligned_cols=61 Identities=15% Similarity=0.173 Sum_probs=45.2
Q ss_pred cccccCCCCCCHHHHHHHh-------CCCCCCCcccHHHHHHHHhcCcceecccccc---CC--CeEecChhchhhh
Q 043063 11 KKGRLANTPLSASQILTRI-------LPSGGGDAENLQRILRLLTNYGVFSEHREFG---GE--RKYSLTEIGKSLV 75 (301)
Q Consensus 11 lf~~L~~g~~t~~ela~~~-------~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~---~~--~~y~~t~~s~~l~ 75 (301)
|+..|..+|.+--+|++.+ ++ ++..+...|+-|...|+|+...... .+ -.|++|+.++...
T Consensus 39 IL~lL~~~~~~Gyei~k~l~~~~~~~~i----s~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l 111 (138)
T 2e1n_A 39 VLAVLRHEDSYGTELIQHLETHWPNYRL----SDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRS 111 (138)
T ss_dssp HHHHHTTSCEEHHHHHHHHHHHSTTEEC----CHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESCSCCHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEEECHHHHHHH
Confidence 6677777898888887766 36 6889999999999999998753210 11 2499999886543
No 500
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=69.95 E-value=4.4 Score=32.79 Aligned_cols=41 Identities=12% Similarity=0.232 Sum_probs=35.9
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063 19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT 68 (301)
Q Consensus 19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 68 (301)
+.|-.+||..+|+ .+..+.|.|+.|...|+++.. .+.+.+.
T Consensus 186 ~~t~~~lA~~lG~----sr~tvsR~l~~l~~~glI~~~-----~~~i~I~ 226 (232)
T 1zyb_A 186 KVKMDDLARCLDD----TRLNISKTLNELQDNGLIELH-----RKEILIP 226 (232)
T ss_dssp ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSCEEE-----TTEEEES
T ss_pred cCCHHHHHHHhCC----ChhHHHHHHHHHHHCCCEEec-----CCEEEEe
Confidence 5799999999999 799999999999999999987 4566554
Done!