Your job contains 1 sequence.
>043064
MANAEVDALDFEDDDLMDEDGTADVDASSSPRAPQPKLKSAITGGAPKKTKGRGFREEAD
SERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLH
LNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKN
MRPGRTHRSRSPRRRY
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 043064
(196 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2033888 - symbol:Y14 species:3702 "Arabidopsis... 573 1.4e-55 1
UNIPROTKB|Q3ZCE8 - symbol:RBM8A "RNA-binding protein 8A" ... 387 7.2e-36 1
UNIPROTKB|E2QV85 - symbol:RBM8A "Uncharacterized protein"... 387 7.2e-36 1
UNIPROTKB|F6XAE9 - symbol:RBM8A "Uncharacterized protein"... 387 7.2e-36 1
UNIPROTKB|Q9Y5S9 - symbol:RBM8A "RNA-binding protein 8A" ... 387 7.2e-36 1
UNIPROTKB|I3LI59 - symbol:RBM8A "Uncharacterized protein"... 387 7.2e-36 1
RGD|1310099 - symbol:Rbm8a "RNA binding motif protein 8A"... 387 7.2e-36 1
ZFIN|ZDB-GENE-050306-51 - symbol:rbm8a "RNA binding motif... 381 3.1e-35 1
FB|FBgn0033378 - symbol:tsu "tsunagi" species:7227 "Droso... 354 2.3e-32 1
WB|WBGene00004387 - symbol:rnp-4 species:6239 "Caenorhabd... 330 7.9e-30 1
DICTYBASE|DDB_G0286007 - symbol:rbm8A "RNA-binding motif ... 319 1.2e-28 1
ASPGD|ASPL0000076347 - symbol:AN4505 species:162425 "Emer... 294 5.2e-26 1
GENEDB_PFALCIPARUM|PF14_0057 - symbol:PF14_0057 "RNA bind... 286 3.6e-25 1
UNIPROTKB|Q8IM34 - symbol:PF14_0057 "RNA binding protein,... 286 3.6e-25 1
POMBASE|SPAC23A1.09 - symbol:SPAC23A1.09 "RNA-binding pro... 266 4.8e-23 1
UNIPROTKB|Q3ZC12 - symbol:EIF3G "Eukaryotic translation i... 132 5.1e-10 2
WB|WBGene00001230 - symbol:eif-3.G species:6239 "Caenorha... 141 1.6e-09 1
ASPGD|ASPL0000055210 - symbol:AN0917 species:162425 "Emer... 122 4.6e-09 2
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 134 4.7e-09 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 134 4.7e-09 1
ZFIN|ZDB-GENE-050327-97 - symbol:rbm39b "RNA binding moti... 122 6.9e-09 2
UNIPROTKB|E9PQ56 - symbol:PUF60 "Poly(U)-binding-splicing... 138 7.1e-09 1
UNIPROTKB|H0YEM1 - symbol:PUF60 "Poly(U)-binding-splicing... 138 7.8e-09 1
UNIPROTKB|F1NA97 - symbol:LOC426301 "Uncharacterized prot... 138 9.4e-09 1
UNIPROTKB|E2RIB8 - symbol:RBM28 "Uncharacterized protein"... 142 1.1e-08 1
UNIPROTKB|I3LVL9 - symbol:PUF60 "Uncharacterized protein"... 138 1.1e-08 1
ZFIN|ZDB-GENE-040426-960 - symbol:rbm28 "RNA binding moti... 142 1.3e-08 1
ZFIN|ZDB-GENE-040426-1094 - symbol:tra2b "transformer 2 b... 134 1.3e-08 1
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"... 129 1.6e-08 1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 130 1.7e-08 1
UNIPROTKB|F1P1V2 - symbol:LOC426301 "Uncharacterized prot... 138 1.8e-08 1
UNIPROTKB|E2R2P7 - symbol:RNPS1 "Uncharacterized protein"... 114 1.8e-08 2
UNIPROTKB|F1N238 - symbol:PUF60 "Poly(U)-binding-splicing... 138 1.8e-08 1
UNIPROTKB|Q2HJG2 - symbol:PUF60 "Poly(U)-binding-splicing... 138 1.8e-08 1
UNIPROTKB|E2RA48 - symbol:PUF60 "Uncharacterized protein"... 138 1.9e-08 1
UNIPROTKB|Q9UHX1 - symbol:PUF60 "Poly(U)-binding-splicing... 138 2.0e-08 1
UNIPROTKB|J9P4I7 - symbol:PUF60 "Uncharacterized protein"... 138 2.0e-08 1
MGI|MGI:1915209 - symbol:Puf60 "poly-U binding splicing f... 138 2.0e-08 1
RGD|621674 - symbol:Puf60 "poly-U binding splicing factor... 138 2.0e-08 1
TAIR|locus:2176222 - symbol:AT5G51300 species:3702 "Arabi... 119 2.0e-08 2
ZFIN|ZDB-GENE-040426-1076 - symbol:eif3g "eukaryotic tran... 133 2.0e-08 1
UNIPROTKB|Q641B2 - symbol:eif3g-b "Eukaryotic translation... 132 2.9e-08 1
UNIPROTKB|Q6DJI8 - symbol:eif3g-a "Eukaryotic translation... 132 2.9e-08 1
UNIPROTKB|Q28CY2 - symbol:eif3g "Eukaryotic translation i... 132 3.0e-08 1
UNIPROTKB|I3LRH2 - symbol:LOC100737210 "Uncharacterized p... 126 3.0e-08 2
UNIPROTKB|F2Z4J5 - symbol:EIF3G "Eukaryotic translation i... 132 3.2e-08 1
UNIPROTKB|E2RGG6 - symbol:EIF3G "Eukaryotic translation i... 132 3.2e-08 1
UNIPROTKB|O75821 - symbol:EIF3G "Eukaryotic translation i... 132 3.2e-08 1
MGI|MGI:1858258 - symbol:Eif3g "eukaryotic translation in... 132 3.2e-08 1
RGD|1307191 - symbol:Eif3g "eukaryotic translation initia... 132 3.2e-08 1
UNIPROTKB|Q5RK09 - symbol:Eif3g "Eukaryotic translation i... 132 3.2e-08 1
UNIPROTKB|F1S3I3 - symbol:EIF3G "Eukaryotic translation i... 132 3.3e-08 1
ZFIN|ZDB-GENE-040426-1391 - symbol:tra2a "transformer-2 a... 131 3.5e-08 1
UNIPROTKB|E2R1C1 - symbol:CSTF2T "Uncharacterized protein... 134 3.5e-08 1
RGD|3153 - symbol:Ncl "nucleolin" species:10116 "Rattus n... 121 3.8e-08 2
UNIPROTKB|Q5U328 - symbol:Ncl "Nucleolin, isoform CRA_c" ... 121 3.8e-08 2
UNIPROTKB|E1BV45 - symbol:RNPS1 "Uncharacterized protein"... 113 3.8e-08 2
ZFIN|ZDB-GENE-030131-2891 - symbol:puf60a "poly-U binding... 135 3.9e-08 1
UNIPROTKB|D3K5N7 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 131 4.3e-08 1
UNIPROTKB|E9PID8 - symbol:CSTF2 "Cleavage stimulation fac... 133 4.6e-08 1
UNIPROTKB|E2R4B2 - symbol:TRA2A "Uncharacterized protein"... 129 4.9e-08 1
UNIPROTKB|Q06AA6 - symbol:TRA2A "Uncharacterized protein"... 129 4.9e-08 1
UNIPROTKB|Q2KJ71 - symbol:TRA2A "Transformer 2 alpha homo... 129 5.0e-08 1
MGI|MGI:1933972 - symbol:Tra2a "transformer 2 alpha homol... 129 5.0e-08 1
UNIPROTKB|Q13595 - symbol:TRA2A "Transformer-2 protein ho... 129 5.1e-08 1
RGD|1562563 - symbol:Tra2a "transformer 2 alpha homolog (... 129 5.1e-08 1
FB|FBgn0086675 - symbol:fne "found in neurons" species:72... 131 5.2e-08 1
UNIPROTKB|Q5ZLS0 - symbol:CSTF2 "Uncharacterized protein"... 133 5.2e-08 1
UNIPROTKB|J9P8Y3 - symbol:CSTF2T "Uncharacterized protein... 134 5.3e-08 1
FB|FBgn0032822 - symbol:CG10466 species:7227 "Drosophila ... 124 5.3e-08 1
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"... 124 5.3e-08 1
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"... 124 5.3e-08 1
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"... 124 5.3e-08 1
UNIPROTKB|K7GQZ8 - symbol:LOC100515986 "Uncharacterized p... 124 5.3e-08 1
UNIPROTKB|Q9DDU8 - symbol:TRA2B "Uncharacterized protein"... 129 5.4e-08 1
UNIPROTKB|Q3ZCE2 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 130 5.5e-08 1
UNIPROTKB|Q15717 - symbol:ELAVL1 "ELAV-like protein 1" sp... 130 5.5e-08 1
UNIPROTKB|F1N9I5 - symbol:ELAVL1 "Uncharacterized protein... 130 5.5e-08 1
UNIPROTKB|F1PSC4 - symbol:ELAVL1 "Uncharacterized protein... 130 5.8e-08 1
UNIPROTKB|H3BMM9 - symbol:RNPS1 "RNA-binding protein with... 114 5.8e-08 2
UNIPROTKB|J9NX69 - symbol:CSTF2 "Uncharacterized protein"... 133 5.8e-08 1
UNIPROTKB|Q1JQ73 - symbol:elavl1-a "ELAV-like protein 1-A... 130 5.9e-08 1
UNIPROTKB|P19338 - symbol:NCL "Nucleolin" species:9606 "H... 122 6.0e-08 2
UNIPROTKB|Q4R4J7 - symbol:NCL "Nucleolin" species:9541 "M... 122 6.0e-08 2
UNIPROTKB|Q5RF26 - symbol:NCL "Nucleolin" species:9601 "P... 122 6.0e-08 2
UNIPROTKB|F1SD01 - symbol:CSTF2T "Uncharacterized protein... 134 6.0e-08 1
UNIPROTKB|Q9H0L4 - symbol:CSTF2T "Cleavage stimulation fa... 134 6.1e-08 1
TAIR|locus:2153659 - symbol:EIF3G2 "eukaryotic translatio... 117 6.1e-08 2
UNIPROTKB|F1NPM7 - symbol:TRA2A "Uncharacterized protein"... 128 6.2e-08 1
RGD|1310026 - symbol:Cstf2t "cleavage stimulation factor,... 134 6.2e-08 1
UNIPROTKB|G3MZ78 - symbol:CSTF2T "Uncharacterized protein... 134 6.3e-08 1
MGI|MGI:1932622 - symbol:Cstf2t "cleavage stimulation fac... 134 6.3e-08 1
UNIPROTKB|B4DVB8 - symbol:ELAVL1 "ELAV-like protein 1" sp... 130 6.5e-08 1
FB|FBgn0264270 - symbol:Sxl "Sex lethal" species:7227 "Dr... 130 6.6e-08 1
UNIPROTKB|F1S1L9 - symbol:LOC100515986 "Uncharacterized p... 133 6.6e-08 1
UNIPROTKB|K7GQE7 - symbol:LOC100515986 "Uncharacterized p... 133 6.7e-08 1
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin... 123 6.8e-08 1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 123 6.8e-08 1
UNIPROTKB|Q8HXM1 - symbol:CSTF2 "Cleavage stimulation fac... 133 7.0e-08 1
UNIPROTKB|K7GS58 - symbol:LOC100515986 "Uncharacterized p... 133 7.0e-08 1
WARNING: Descriptions of 428 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2033888 [details] [associations]
symbol:Y14 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0016604
"nuclear body" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0035145 "exon-exon junction complex"
evidence=IPI] [GO:0010628 "positive regulation of gene expression"
evidence=IEP] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005737 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0010628 GO:GO:0016604 GO:GO:0035145 KO:K12876 IPI:IPI00540540
RefSeq:NP_564591.1 UniGene:At.18276 ProteinModelPortal:F4I9J7
SMR:F4I9J7 PRIDE:F4I9J7 EnsemblPlants:AT1G51510.1 GeneID:841576
KEGG:ath:AT1G51510 OMA:WIILVTG Uniprot:F4I9J7
Length = 202
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 110/158 (69%), Positives = 133/158 (84%)
Query: 27 ASSSPRAPQPKLKSAITGG---APKKTKGRGFREEADSERHSRLADRNFESLGTDGGPGP 83
A SPRA P+LKSAI G + KKTKGRGFREE DS+R RL+ R+FESLG+DG PGP
Sbjct: 29 ADVSPRAGHPRLKSAIAGANGESAKKTKGRGFREEKDSDRQRRLSSRDFESLGSDGRPGP 88
Query: 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEE 143
QRS+EGWIILV+GVHEE QE+D+ N FG++GEI+NL+LNLDRR+G+VKGYALIEYE EE
Sbjct: 89 QRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEE 148
Query: 144 AQNAITAMNGGELLTQTLTVDWAFSNGPSTGP-FKRKN 180
AQ+AI+AMNG ELLTQ ++VDWAFS+GPS G ++RKN
Sbjct: 149 AQSAISAMNGAELLTQNVSVDWAFSSGPSGGESYRRKN 186
>UNIPROTKB|Q3ZCE8 [details] [associations]
symbol:RBM8A "RNA-binding protein 8A" species:9913 "Bos
taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 GO:GO:0071013 eggNOG:COG0724
GO:GO:0035145 GeneTree:ENSGT00550000074641 HSSP:P52298
EMBL:BT025376 EMBL:BC102484 IPI:IPI00705285 IPI:IPI00939094
RefSeq:NP_001030401.1 UniGene:Bt.49450 ProteinModelPortal:Q3ZCE8
SMR:Q3ZCE8 STRING:Q3ZCE8 PRIDE:Q3ZCE8 Ensembl:ENSBTAT00000011016
GeneID:518045 KEGG:bta:518045 CTD:9939 HOGENOM:HOG000183826
HOVERGEN:HBG055173 InParanoid:Q3ZCE8 KO:K12876 OMA:WILFVTS
OrthoDB:EOG42822W NextBio:20872569 Uniprot:Q3ZCE8
Length = 174
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 73/133 (54%), Positives = 96/133 (72%)
Query: 48 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDL 106
KK KGRGF E S R +++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+
Sbjct: 33 KKRKGRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDI 89
Query: 107 QNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166
+ F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+ +NG +L+ Q ++VDW
Sbjct: 90 HDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 149
Query: 167 FSNGPSTGPFKRK 179
F GP G KR+
Sbjct: 150 FVRGPPKG--KRR 160
>UNIPROTKB|E2QV85 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 GO:GO:0071013
GO:GO:0035145 ProteinModelPortal:E2QV85 Ensembl:ENSCAFT00000017835
Uniprot:E2QV85
Length = 177
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 73/133 (54%), Positives = 96/133 (72%)
Query: 48 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDL 106
KK KGRGF E S R +++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+
Sbjct: 36 KKRKGRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDI 92
Query: 107 QNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166
+ F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+ +NG +L+ Q ++VDW
Sbjct: 93 HDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 152
Query: 167 FSNGPSTGPFKRK 179
F GP G KR+
Sbjct: 153 FVRGPPKG--KRR 163
>UNIPROTKB|F6XAE9 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR008111 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GeneTree:ENSGT00550000074641 CTD:9939 KO:K12876 OMA:WILFVTS
Ensembl:ENSCAFT00000017835 EMBL:AAEX03011037 RefSeq:XP_533035.1
ProteinModelPortal:F6XAE9 GeneID:475827 KEGG:cfa:475827
Uniprot:F6XAE9
Length = 174
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 73/133 (54%), Positives = 96/133 (72%)
Query: 48 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDL 106
KK KGRGF E S R +++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+
Sbjct: 33 KKRKGRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDI 89
Query: 107 QNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166
+ F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+ +NG +L+ Q ++VDW
Sbjct: 90 HDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 149
Query: 167 FSNGPSTGPFKRK 179
F GP G KR+
Sbjct: 150 FVRGPPKG--KRR 160
>UNIPROTKB|Q9Y5S9 [details] [associations]
symbol:RBM8A "RNA-binding protein 8A" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0005737 "cytoplasm" evidence=NAS] [GO:0003729 "mRNA binding"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0035145 "exon-exon junction
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005654 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 GO:GO:0003729
Gene3D:3.30.70.330 TCDB:3.A.18.1.1 GO:GO:0006406 EMBL:AL160282
GO:GO:0000398 GO:GO:0071013 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0035145 PDB:2HYI PDB:2J0Q PDB:2J0S PDB:2XB2 PDB:3EX7
PDBsum:2HYI PDBsum:2J0Q PDBsum:2J0S PDBsum:2XB2 PDBsum:3EX7
GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 EMBL:CH471244
PDB:1P27 PDBsum:1P27 CTD:9939 HOGENOM:HOG000183826
HOVERGEN:HBG055173 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
EMBL:AF127761 EMBL:AF198620 EMBL:AF231511 EMBL:AF231512
EMBL:AF299118 EMBL:AF403012 EMBL:AF182415 EMBL:AF161463
EMBL:CR541823 EMBL:CR541805 EMBL:AK075009 EMBL:BC017088
IPI:IPI00001757 IPI:IPI00216659 RefSeq:NP_005096.1
RefSeq:XP_003960226.1 UniGene:Hs.591455 ProteinModelPortal:Q9Y5S9
SMR:Q9Y5S9 DIP:DIP-33070N IntAct:Q9Y5S9 MINT:MINT-265248
STRING:Q9Y5S9 PhosphoSite:Q9Y5S9 DMDM:10720244 PaxDb:Q9Y5S9
PRIDE:Q9Y5S9 DNASU:9939 Ensembl:ENST00000330165
Ensembl:ENST00000369307 Ensembl:ENST00000578414
Ensembl:ENST00000583313 GeneID:101060541 GeneID:9939
KEGG:hsa:101060541 KEGG:hsa:9939 UCSC:uc001ent.2 UCSC:uc001enu.2
GeneCards:GC01P145507 HGNC:HGNC:9905 HPA:CAB012803 HPA:HPA018403
MIM:605313 neXtProt:NX_Q9Y5S9 Orphanet:3320 PharmGKB:PA34270
InParanoid:Q9Y5S9 PhylomeDB:Q9Y5S9 ChiTaRS:RBM8A
EvolutionaryTrace:Q9Y5S9 GenomeRNAi:9939 NextBio:37498
PMAP-CutDB:Q9Y5S9 Bgee:Q9Y5S9 CleanEx:HS_RBM8A
Genevestigator:Q9Y5S9 GermOnline:ENSG00000131795 Uniprot:Q9Y5S9
Length = 174
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 73/133 (54%), Positives = 96/133 (72%)
Query: 48 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDL 106
KK KGRGF E S R +++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+
Sbjct: 33 KKRKGRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDI 89
Query: 107 QNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166
+ F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+ +NG +L+ Q ++VDW
Sbjct: 90 HDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 149
Query: 167 FSNGPSTGPFKRK 179
F GP G KR+
Sbjct: 150 FVRGPPKG--KRR 160
>UNIPROTKB|I3LI59 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 GO:GO:0071013 GO:GO:0035145
GeneTree:ENSGT00550000074641 OMA:WILFVTS EMBL:CU606940
Ensembl:ENSSSCT00000022923 Uniprot:I3LI59
Length = 177
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 73/133 (54%), Positives = 96/133 (72%)
Query: 48 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDL 106
KK KGRGF E S R +++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+
Sbjct: 36 KKRKGRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDI 92
Query: 107 QNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166
+ F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+ +NG +L+ Q ++VDW
Sbjct: 93 HDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 152
Query: 167 FSNGPSTGPFKRK 179
F GP G KR+
Sbjct: 153 FVRGPPKG--KRR 163
>RGD|1310099 [details] [associations]
symbol:Rbm8a "RNA binding motif protein 8A" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA;ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR008111 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738
PROSITE:PS50102 SMART:SM00360 RGD:1310099 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0051028 GO:GO:0071013 eggNOG:COG0724 GO:GO:0035145
GeneTree:ENSGT00550000074641 CTD:9939 HOGENOM:HOG000183826
KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W EMBL:DQ359102
IPI:IPI00210002 RefSeq:NP_001258067.1 RefSeq:XP_001059872.1
UniGene:Rn.37716 ProteinModelPortal:Q27W01 SMR:Q27W01 STRING:Q27W01
PhosphoSite:Q27W01 PRIDE:Q27W01 Ensembl:ENSRNOT00000028807
GeneID:295284 KEGG:rno:295284 UCSC:RGD:1310099 InParanoid:Q27W01
NextBio:639304 Genevestigator:Q27W01 Uniprot:Q27W01
Length = 174
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 73/133 (54%), Positives = 96/133 (72%)
Query: 48 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDL 106
KK KGRGF E S R +++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+
Sbjct: 33 KKRKGRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDI 89
Query: 107 QNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166
+ F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+ +NG +L+ Q ++VDW
Sbjct: 90 HDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 149
Query: 167 FSNGPSTGPFKRK 179
F GP G KR+
Sbjct: 150 FVRGPPKG--KRR 160
>ZFIN|ZDB-GENE-050306-51 [details] [associations]
symbol:rbm8a "RNA binding motif protein 8A"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0051028
"mRNA transport" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050306-51 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0051028
eggNOG:COG0724 GeneTree:ENSGT00550000074641 CTD:9939
HOGENOM:HOG000183826 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
EMBL:BC090261 IPI:IPI00505312 RefSeq:NP_001013363.1
UniGene:Dr.76821 HSSP:Q9Y5S9 ProteinModelPortal:Q5D018 SMR:Q5D018
STRING:Q5D018 PRIDE:Q5D018 Ensembl:ENSDART00000018253 GeneID:503767
KEGG:dre:503767 InParanoid:Q5D018 NextBio:20866311 Bgee:Q5D018
Uniprot:Q5D018
Length = 174
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 71/125 (56%), Positives = 96/125 (76%)
Query: 48 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDL 106
KK KGRGF E + SR+ + +++++ DG PGPQRS+EGWI+ VTGVHEEA E+D+
Sbjct: 33 KKRKGRGFGSEEGAR--SRVRE-DYDTVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDV 89
Query: 107 QNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166
+ F E+GEI+NLHLNLDRRTG++KGYAL+EYE ++EAQ A+ +NG EL+ Q ++VDW
Sbjct: 90 HDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAMEGLNGQELMGQPISVDWC 149
Query: 167 FSNGP 171
F GP
Sbjct: 150 FVRGP 154
>FB|FBgn0033378 [details] [associations]
symbol:tsu "tsunagi" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0007310 "oocyte
dorsal/ventral axis specification" evidence=IMP] [GO:0007314
"oocyte anterior/posterior axis specification" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=IMP] [GO:0007312 "oocyte
nucleus migration involved in oocyte dorsal/ventral axis
specification" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0007317 "regulation of pole plasm oskar mRNA localization"
evidence=IMP;IPI] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0045451 "pole plasm oskar mRNA localization" evidence=TAS]
[GO:0046595 "establishment of pole plasm mRNA localization"
evidence=TAS] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007294
"germarium-derived oocyte fate determination" evidence=IMP]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IPI] [GO:0007173
"epidermal growth factor receptor signaling pathway" evidence=IMP]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
EMBL:AE013599 GO:GO:0005737 GO:GO:0007173 GO:GO:0000226
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006406
GO:GO:0000398 GO:GO:0071013 GO:GO:0007312 eggNOG:COG0724
GO:GO:0045451 GO:GO:0035145 GO:GO:0007317
GeneTree:ENSGT00550000074641 PDB:1HL6 PDB:1OO0 PDB:1RK8 PDB:2X1G
PDBsum:1HL6 PDBsum:1OO0 PDBsum:1RK8 PDBsum:2X1G KO:K12876
OMA:WILFVTS EMBL:AF173550 EMBL:AY071005 RefSeq:NP_610454.2
UniGene:Dm.19884 ProteinModelPortal:Q9V535 SMR:Q9V535
DIP:DIP-24075N IntAct:Q9V535 MINT:MINT-816263 STRING:Q9V535
PaxDb:Q9V535 PRIDE:Q9V535 EnsemblMetazoa:FBtr0088567 GeneID:35924
KEGG:dme:Dmel_CG8781 UCSC:CG8781-RA CTD:110124 FlyBase:FBgn0033378
InParanoid:Q9V535 OrthoDB:EOG4N02X6 PhylomeDB:Q9V535
EvolutionaryTrace:Q9V535 GenomeRNAi:35924 NextBio:795852
Bgee:Q9V535 GermOnline:CG8781 GO:GO:0046595 Uniprot:Q9V535
Length = 165
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 68/126 (53%), Positives = 89/126 (70%)
Query: 48 KKTKGRGFREEADSER--HSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDD 105
K KGRGF ++++ HS RN + + PGPQRS+EGWI+ VT +HEEAQED+
Sbjct: 31 KHRKGRGFGSDSNTREAIHSYERVRNEDDDELE--PGPQRSVEGWILFVTSIHEEAQEDE 88
Query: 106 LQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165
+Q F +YGEI+N+HLNLDRRTGF KGYAL+EYE ++A A A+NG E++ QT+ VDW
Sbjct: 89 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148
Query: 166 AFSNGP 171
F GP
Sbjct: 149 CFVKGP 154
>WB|WBGene00004387 [details] [associations]
symbol:rnp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0009790 "embryo development" evidence=IMP] [GO:0001703
"gastrulation with mouth forming first" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0005737 GO:GO:0040007 GO:GO:0006915
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0003723 GO:GO:0006396 GO:GO:0040035 GO:GO:0040022 HSSP:Q9V535
eggNOG:COG0724 GeneTree:ENSGT00550000074641 GO:GO:0001703
EMBL:Z32683 HOGENOM:HOG000183826 KO:K12876 PIR:F88427
RefSeq:NP_497891.1 ProteinModelPortal:Q21832 SMR:Q21832
DIP:DIP-26500N IntAct:Q21832 MINT:MINT-1100537 STRING:Q21832
PaxDb:Q21832 EnsemblMetazoa:R07E5.14.1 EnsemblMetazoa:R07E5.14.2
EnsemblMetazoa:R07E5.14.3 GeneID:175572 KEGG:cel:CELE_R07E5.14
UCSC:R07E5.14.2 CTD:175572 WormBase:R07E5.14 InParanoid:Q21832
OMA:NIHEEAT NextBio:888726 Uniprot:Q21832
Length = 142
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 65/127 (51%), Positives = 86/127 (67%)
Query: 48 KKTKGRGFREEADSERHSR-LADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDL 106
++++GRG + + ER + + D ES T G P QRS+EGWI+ VT +HEEA EDD+
Sbjct: 16 ERSRGRGLAQSRNRERITYDVVDE--ESSATSGAP--QRSVEGWIVFVTNIHEEATEDDV 71
Query: 107 QNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166
+ F EYG+I+N+HLNLDRRTGF+KGYAL+EYE +EA AI N +LL Q + VDW
Sbjct: 72 HDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTDLLGQNVKVDWC 131
Query: 167 FSNGPST 173
F G T
Sbjct: 132 FVKGKKT 138
>DICTYBASE|DDB_G0286007 [details] [associations]
symbol:rbm8A "RNA-binding motif protein 8A"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0286007
GenomeReviews:CM000153_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12876 EMBL:AAFI02000084 eggNOG:NOG246776
RefSeq:XP_637941.1 ProteinModelPortal:Q54ME8 SMR:Q54ME8
STRING:Q54ME8 EnsemblProtists:DDB0233616 GeneID:8625394
KEGG:ddi:DDB_G0286007 InParanoid:Q54ME8 OMA:SERYSGK Uniprot:Q54ME8
Length = 187
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 72/135 (53%), Positives = 86/135 (63%)
Query: 44 GGAPKKTKGRGFRE----EADS-ERHSRLADRNFESLGTDGGP--G-PQRSIEGWIILVT 95
G P K KGRG + DS ER+S F SL DGG G P +SIEGWII V
Sbjct: 18 GILPSKIKGRGANNSDSMDIDSSERYSGKGGE-FHSLNDDGGDKVGEPLKSIEGWIIFVR 76
Query: 96 GVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGE 155
+ EE QE DL ++F EYG+I+N+HLN+DRRTGF KGYALIEYE EA++AI +G E
Sbjct: 77 NIQEEVQEPDLMDIFAEYGQIKNIHLNIDRRTGFTKGYALIEYEKRSEAEDAIKNGSGYE 136
Query: 156 LLTQTLTVDWAFSNG 170
L L+VDWAF G
Sbjct: 137 LAGLKLSVDWAFITG 151
>ASPGD|ASPL0000076347 [details] [associations]
symbol:AN4505 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 EMBL:BN001303
EMBL:AACD01000078 HOGENOM:HOG000183826 KO:K12876 eggNOG:NOG246776
OrthoDB:EOG4M9523 RefSeq:XP_662109.1 ProteinModelPortal:Q5B4M5
SMR:Q5B4M5 STRING:Q5B4M5 EnsemblFungi:CADANIAT00005939
GeneID:2872307 KEGG:ani:AN4505.2 OMA:IEGWIII Uniprot:Q5B4M5
Length = 158
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 62/124 (50%), Positives = 77/124 (62%)
Query: 58 EADSERHSRLADRNFESLGTDG----GPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEY 113
E D A+ + GTD G RSIEGWII+ T +HEEA E+D+ ++F EY
Sbjct: 6 EIDPPVSQEQAEPQTSNSGTDARTHDGAVAVRSIEGWIIIATNIHEEASEEDVTDLFAEY 65
Query: 114 GEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPST 173
GEI+N LNLDRRTG+VKGYALIEY EA AI +NG +LL QT+ VD+AF P +
Sbjct: 66 GEIKNFSLNLDRRTGYVKGYALIEYSTLPEAAEAIKELNGTKLLDQTIEVDYAFVRPPPS 125
Query: 174 GPFK 177
K
Sbjct: 126 NKGK 129
>GENEDB_PFALCIPARUM|PF14_0057 [details] [associations]
symbol:PF14_0057 "RNA binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 EMBL:AE014187
HSSP:Q9V535 HOGENOM:HOG000183826 KO:K12876 OMA:NIHEEAT
RefSeq:XP_001348230.1 ProteinModelPortal:Q8IM34 SMR:Q8IM34
EnsemblProtists:PF14_0057:mRNA GeneID:811639 KEGG:pfa:PF14_0057
EuPathDB:PlasmoDB:PF3D7_1406000 ProtClustDB:CLSZ2446706
Uniprot:Q8IM34
Length = 107
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 49/85 (57%), Positives = 68/85 (80%)
Query: 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFE 142
P +S+EGWII++T +H EA++D ++ VF +G+I+NLHLN+DRRTGF+KGYA +EYENF
Sbjct: 16 PAKSVEGWIIIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYAFLEYENFV 75
Query: 143 EAQNAITAMNGGELLTQTLTVDWAF 167
+A+ AI M+G LL Q + VDWAF
Sbjct: 76 DAKRAIDEMDGTMLLNQEIHVDWAF 100
>UNIPROTKB|Q8IM34 [details] [associations]
symbol:PF14_0057 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 EMBL:AE014187
HSSP:Q9V535 HOGENOM:HOG000183826 KO:K12876 OMA:NIHEEAT
RefSeq:XP_001348230.1 ProteinModelPortal:Q8IM34 SMR:Q8IM34
EnsemblProtists:PF14_0057:mRNA GeneID:811639 KEGG:pfa:PF14_0057
EuPathDB:PlasmoDB:PF3D7_1406000 ProtClustDB:CLSZ2446706
Uniprot:Q8IM34
Length = 107
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 49/85 (57%), Positives = 68/85 (80%)
Query: 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFE 142
P +S+EGWII++T +H EA++D ++ VF +G+I+NLHLN+DRRTGF+KGYA +EYENF
Sbjct: 16 PAKSVEGWIIIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYAFLEYENFV 75
Query: 143 EAQNAITAMNGGELLTQTLTVDWAF 167
+A+ AI M+G LL Q + VDWAF
Sbjct: 76 DAKRAIDEMDGTMLLNQEIHVDWAF 100
>POMBASE|SPAC23A1.09 [details] [associations]
symbol:SPAC23A1.09 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=NAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC23A1.09
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045292 HOGENOM:HOG000183826
KO:K12876 HSSP:Q9Y5S9 PIR:T38229 RefSeq:NP_594439.1
ProteinModelPortal:O42847 SMR:O42847 STRING:O42847
EnsemblFungi:SPAC23A1.09.1 GeneID:2541998 KEGG:spo:SPAC23A1.09
eggNOG:NOG246776 OMA:ITETTEG OrthoDB:EOG4M9523 NextBio:20803079
Uniprot:O42847
Length = 121
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 50/93 (53%), Positives = 68/93 (73%)
Query: 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFE 142
P +S+EG+II+VTGVH EA E+ ++++F ++G ++NLHLNLDRRTG+VKGYALIEY E
Sbjct: 3 PAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLE 62
Query: 143 EAQNAITAMNGGELLTQTLTVDWAFSNGPSTGP 175
+AQ A+ N LL + L VD+AF P P
Sbjct: 63 QAQKAVDEKNLS-LLDEKLEVDFAFLEPPERAP 94
>UNIPROTKB|Q3ZC12 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9913 "Bos taurus" [GO:0006413 "translational
initiation" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0005852 "eukaryotic translation
initiation factor 3 complex" evidence=ISS] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0048471 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 GO:GO:0005852
KO:K03248 HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352
Pfam:PF12353 HOVERGEN:HBG026850 EMBL:BC102984 IPI:IPI00700187
RefSeq:NP_001073091.1 UniGene:Bt.49351 ProteinModelPortal:Q3ZC12
SMR:Q3ZC12 STRING:Q3ZC12 PRIDE:Q3ZC12 GeneID:615695 KEGG:bta:615695
CTD:8666 HOGENOM:HOG000239560 InParanoid:Q3ZC12 OrthoDB:EOG4Z0B62
NextBio:20899745 Uniprot:Q3ZC12
Length = 320
Score = 132 (51.5 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEE 143
+R+ + I VT + E+ +E DLQ +F +G I ++L D+ TG KG+A I + E+
Sbjct: 233 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 292
Query: 144 AQNAITAMNGGELLTQTLTVDWAFSNGPST 173
A AI ++G L V+WA PST
Sbjct: 293 AARAIAGVSGFGYDHLILNVEWA---KPST 319
Score = 35 (17.4 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 31 PRAPQPKLKSAITGGAPKKTKGR 53
P AP P K I G T+ R
Sbjct: 49 PGAPLPPPKEVINGNIKTVTEYR 71
>WB|WBGene00001230 [details] [associations]
symbol:eif-3.G species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00343 SMART:SM00360 GO:GO:0009792 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0000003
GO:GO:0003743 EMBL:Z50044 eggNOG:COG0724
GeneTree:ENSGT00510000047802 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOGENOM:HOG000239560 PIR:T21238 RefSeq:NP_495778.1
ProteinModelPortal:Q19706 SMR:Q19706 STRING:Q19706 PaxDb:Q19706
EnsemblMetazoa:F22B5.2.1 EnsemblMetazoa:F22B5.2.2
EnsemblMetazoa:F22B5.2.3 GeneID:174346 KEGG:cel:CELE_F22B5.2
CTD:174346 WormBase:F22B5.2 InParanoid:Q19706 OMA:TRTETAF
NextBio:883648 Uniprot:Q19706
Length = 256
Score = 141 (54.7 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 34/110 (30%), Positives = 59/110 (53%)
Query: 57 EEADSERHSRLADRNFESLGTDGGP-GPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGE 115
EEAD+++ + DR + DG RS E VT + +E ED+L+++FG+ G
Sbjct: 144 EEADADKDTE-KDRMAMGMRPDGRQIDRNRSDEN-TCRVTNLPQEMNEDELRDLFGKIGR 201
Query: 116 IRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165
+ + + D+ TG KG+A + +E+ ++A AI +N + L V+W
Sbjct: 202 VIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELNDIRMYHMVLKVEW 251
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 122 (48.0 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 26/89 (29%), Positives = 49/89 (55%)
Query: 68 ADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRT 127
A++N ++ ++ G + S + V +H E+DLQ+VF +GE+ + L D T
Sbjct: 251 AEKNRQARNSEASSGNKHSAPFHRLYVGNIHFSIDENDLQSVFEPFGELEFVQLQKDE-T 309
Query: 128 GFVKGYALIEYENFEEAQNAITAMNGGEL 156
G +GY +++ + +A+ A+ MNG +L
Sbjct: 310 GRSRGYGFVQFRDPNQAREALEKMNGYDL 338
Score = 44 (20.5 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 25 VDASSSPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDG 79
++++++P +P +S G + + R + + D R R DR S DG
Sbjct: 10 LESTAAPATQRPDDRSKAENGDRRDERDRSW--DRDRRRRDRSRDRR-RSKDVDG 61
Score = 38 (18.4 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 25 VDASSSPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDG 79
VD R+P+ + SA G+ + K R DS+R DR+ + ++G
Sbjct: 59 VDGDDDMRSPRSEHGSA--NGSHRSRKRSRSR---DSDRRRARRDRHGDDYRSNG 108
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 33/87 (37%), Positives = 48/87 (55%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I V + + D+LQ+ FG+YGEI L +DR TG KG+A I Y + AQ A++
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKA 79
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKR 178
NG +L + + V+ A N TG +R
Sbjct: 80 NGIDLQGRKIRVNIAREN---TGDRRR 103
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 33/87 (37%), Positives = 48/87 (55%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I V + + D+LQ+ FG+YGEI L +DR TG KG+A I Y + AQ A++
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKA 79
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKR 178
NG +L + + V+ A N TG +R
Sbjct: 80 NGIDLQGRKIRVNIAREN---TGDRRR 103
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 122 (48.0 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 29/85 (34%), Positives = 44/85 (51%)
Query: 79 GGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEY 138
GG GP R + V +H ED L+ +F +G+I + L +D TG KGY I +
Sbjct: 259 GGAGPMR------LYVGSLHFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISF 312
Query: 139 ENFEEAQNAITAMNGGELLTQTLTV 163
+ E A+ A+ +NG EL + + V
Sbjct: 313 ADAECAKKALEQLNGFELAGRPMKV 337
Score = 42 (19.8 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 29 SSPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADR 70
S R+P P + + +GG K + R R + + SR +R
Sbjct: 39 SHSRSPSPGRRRSRSGGRKKSRERR--RSRSRERKPSRSKER 78
>UNIPROTKB|E9PQ56 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
Uniprot:E9PQ56
Length = 323
Score = 138 (53.6 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I V VH++ +DD+++VF +G+I++ L D TG KGY IEYE + +Q+A+++M
Sbjct: 210 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 269
Query: 152 NGGELLTQTLTV 163
N +L Q L V
Sbjct: 270 NLFDLGGQYLRV 281
>UNIPROTKB|H0YEM1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
Ensembl:ENST00000527744 Uniprot:H0YEM1
Length = 336
Score = 138 (53.6 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I V VH++ +DD+++VF +G+I++ L D TG KGY IEYE + +Q+A+++M
Sbjct: 226 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 285
Query: 152 NGGELLTQTLTV 163
N +L Q L V
Sbjct: 286 NLFDLGGQYLRV 297
>UNIPROTKB|F1NA97 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:AADN02016569 EMBL:AADN02016570 EMBL:AADN02016571
EMBL:AADN02016572 EMBL:AADN02016573 EMBL:AADN02016574
IPI:IPI00596858 Ensembl:ENSGALT00000036523 ArrayExpress:F1NA97
Uniprot:F1NA97
Length = 366
Score = 138 (53.6 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I V VH++ +DD+++VF +G+I++ L D TG KGY IEYE + +Q+A+++M
Sbjct: 185 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 244
Query: 152 NGGELLTQTLTV 163
N +L Q L V
Sbjct: 245 NLFDLGGQYLRV 256
>UNIPROTKB|E2RIB8 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005794 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074976 KO:K14573 CTD:55131 OMA:KSMNMKE
EMBL:AAEX03009272 EMBL:AAEX03009273 RefSeq:XP_532435.3
ProteinModelPortal:E2RIB8 Ensembl:ENSCAFT00000002617 GeneID:475203
KEGG:cfa:475203 NextBio:20851079 Uniprot:E2RIB8
Length = 751
Score = 142 (55.0 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 27/76 (35%), Positives = 50/76 (65%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRT-GFVKGYALIEYENFEEAQNAITA 150
+++ + + EDDL+ VFG+YG + L +N+ R+ G ++G+A ++++N EA A+ +
Sbjct: 116 LIIRNLSFKCSEDDLKTVFGQYGAV--LEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKS 173
Query: 151 MNGGELLTQTLTVDWA 166
MN E+ +T+ VDWA
Sbjct: 174 MNMKEIKGRTVAVDWA 189
>UNIPROTKB|I3LVL9 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019907 "cyclin-dependent protein kinase activating
kinase holoenzyme complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 OMA:CLQQVNG
Ensembl:ENSSSCT00000029289 Uniprot:I3LVL9
Length = 406
Score = 138 (53.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I V VH++ +DD+++VF +G+I++ L D TG KGY IEYE + +Q+A+++M
Sbjct: 120 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 179
Query: 152 NGGELLTQTLTV 163
N +L Q L V
Sbjct: 180 NLFDLGGQYLRV 191
>ZFIN|ZDB-GENE-040426-960 [details] [associations]
symbol:rbm28 "RNA binding motif protein 28"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-960 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000124666 HOVERGEN:HBG073213 EMBL:BX901876
IPI:IPI00499330 UniGene:Dr.78227 ProteinModelPortal:Q1LV83
SMR:Q1LV83 STRING:Q1LV83 ArrayExpress:Q1LV83 Uniprot:Q1LV83
Length = 865
Score = 142 (55.0 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 33/129 (25%), Positives = 67/129 (51%)
Query: 48 KKTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIE-GWIILVTGVHEEAQEDDL 106
+K + ++ D+E + ++ E+ T+ P P + E GW+I + + + ++D+L
Sbjct: 86 RKKNAKTNKDSGDTEE----SQKSGETKNTEEIPSPTKKKENGWLI-IRNLSFKCEDDEL 140
Query: 107 QNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166
+ +F ++G + + L + G KG+A ++++ EA+ A AMN + + + VDW
Sbjct: 141 KQIFSKFGTVLETRIPL-KPDGKKKGFAFVQFKCVSEAEKARAAMNRKAIRDRPVEVDWT 199
Query: 167 FSNGPSTGP 175
SN S P
Sbjct: 200 TSNTESADP 208
Score = 126 (49.4 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 23/77 (29%), Positives = 46/77 (59%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+++ + + +EDDL+ +F E+G + + L + G +G+A + ++ EA A+TAM
Sbjct: 238 LIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPL-KPDGKKRGFAFVLFKRMPEAGKALTAM 296
Query: 152 NGGELLTQTLTVDWAFS 168
NG ++ + + VDWA +
Sbjct: 297 NGKKIKDRQVAVDWAIA 313
>ZFIN|ZDB-GENE-040426-1094 [details] [associations]
symbol:tra2b "transformer 2 beta homolog
(Drosophila)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-1094
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q9V535
HOVERGEN:HBG107480 KO:K12897 CTD:6434 EMBL:BC049051 IPI:IPI00493400
RefSeq:NP_957491.1 UniGene:Dr.9221 ProteinModelPortal:Q7ZUG9
SMR:Q7ZUG9 STRING:Q7ZUG9 PRIDE:Q7ZUG9 GeneID:394172 KEGG:dre:394172
InParanoid:Q7ZUG9 NextBio:20815117 ArrayExpress:Q7ZUG9 Bgee:Q7ZUG9
Uniprot:Q7ZUG9
Length = 278
Score = 134 (52.2 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 36/130 (27%), Positives = 68/130 (52%)
Query: 48 KKTKGRGFREE----ADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQE 103
++++ R + E S HS +++R +G P P + G V G+ E
Sbjct: 83 RRSRSRSYSSEYHRRRSSHSHSPMSNRR-RHIGDRANPDPNCCL-G----VFGLSLYTTE 136
Query: 104 DDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163
DL+ VF +YG + ++ + D+++ +G+AL+ +EN E+++ A NG EL + + V
Sbjct: 137 RDLREVFSKYGPLSDVCIVYDQQSRRSRGFALVYFENREDSKEAKERANGMELDGRRIRV 196
Query: 164 DWAFSNGPST 173
D++ + GP T
Sbjct: 197 DYSITKGPHT 206
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 25/83 (30%), Positives = 47/83 (56%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ + G+ + E L++ F +YG I N+H+ +R T +G+ + +EN ++A++A+ M
Sbjct: 7 LFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGM 66
Query: 152 NGGELLTQTLTVDWAFSNGPSTG 174
NG + +T+ VD A G G
Sbjct: 67 NGKSVDGRTIRVDEAGKGGGGGG 89
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 130 (50.8 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 26/86 (30%), Positives = 49/86 (56%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ + G+ + E L+ F +YG I + + DR T +G+ + +EN E+A++A+ AM
Sbjct: 25 LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAM 84
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFK 177
NG ++ + + VD A +G +G F+
Sbjct: 85 NGKQVDGRMIRVDEAGKSGGRSGGFR 110
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 138 (53.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I V VH++ +DD+++VF +G+I++ L D TG KGY IEYE + +Q+A+++M
Sbjct: 191 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 250
Query: 152 NGGELLTQTLTV 163
N +L Q L V
Sbjct: 251 NLFDLGGQYLRV 262
>UNIPROTKB|E2R2P7 [details] [associations]
symbol:RNPS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R2P7 Ensembl:ENSCAFT00000030839 Uniprot:E2R2P7
Length = 320
Score = 114 (45.2 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 103 EDDLQNVFGEYGEIRNLHLNLDRRTGFV-KGYALIEYENFEEAQNAITAMNGGELLTQTL 161
+D + +F YG+I+ + + ++R + KGYA +E+EN +EA+ A+ M+GG++ Q +
Sbjct: 173 KDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 232
Query: 162 TVDWAFSNGPSTGP 175
T + P P
Sbjct: 233 TATAVLAPWPRPPP 246
Score = 54 (24.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 29 SSPRAPQP-KLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDG---GPGP 83
SS RAP P K K + ++K +G +E+ + R R S + GPGP
Sbjct: 21 SSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSASHLSGPGP 79
Score = 37 (18.1 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 27 ASSSPRAP--QPKLKSA--ITGGAPKKTKGRGFREEADSERHS 65
A +P AP P L TGG+ K+K R+E + +R S
Sbjct: 113 AVPAPAAPLAHPVLLGVGMTTGGSRSKSKPPK-RDEKERKRRS 154
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 138 (53.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I V VH++ +DD+++VF +G+I++ L D TG KGY IEYE + +Q+A+++M
Sbjct: 199 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 258
Query: 152 NGGELLTQTLTV 163
N +L Q L V
Sbjct: 259 NLFDLGGQYLRV 270
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 138 (53.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I V VH++ +DD+++VF +G+I++ L D TG KGY IEYE + +Q+A+++M
Sbjct: 199 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 258
Query: 152 NGGELLTQTLTV 163
N +L Q L V
Sbjct: 259 NLFDLGGQYLRV 270
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 138 (53.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I V VH++ +DD+++VF +G+I++ L D TG KGY IEYE + +Q+A+++M
Sbjct: 212 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 271
Query: 152 NGGELLTQTLTV 163
N +L Q L V
Sbjct: 272 NLFDLGGQYLRV 283
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 138 (53.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I V VH++ +DD+++VF +G+I++ L D TG KGY IEYE + +Q+A+++M
Sbjct: 228 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 287
Query: 152 NGGELLTQTLTV 163
N +L Q L V
Sbjct: 288 NLFDLGGQYLRV 299
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 138 (53.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I V VH++ +DD+++VF +G+I++ L D TG KGY IEYE + +Q+A+++M
Sbjct: 229 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 288
Query: 152 NGGELLTQTLTV 163
N +L Q L V
Sbjct: 289 NLFDLGGQYLRV 300
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 138 (53.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I V VH++ +DD+++VF +G+I++ L D TG KGY IEYE + +Q+A+++M
Sbjct: 233 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 292
Query: 152 NGGELLTQTLTV 163
N +L Q L V
Sbjct: 293 NLFDLGGQYLRV 304
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 138 (53.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I V VH++ +DD+++VF +G+I++ L D TG KGY IEYE + +Q+A+++M
Sbjct: 233 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 292
Query: 152 NGGELLTQTLTV 163
N +L Q L V
Sbjct: 293 NLFDLGGQYLRV 304
>TAIR|locus:2176222 [details] [associations]
symbol:AT5G51300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00322 SMART:SM00343
SMART:SM00360 EMBL:CP002688 GO:GO:0008380 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
SUPFAM:SSF57756 HSSP:Q9BW01 KO:K13095 EMBL:AB023044 OMA:GDGPSHE
EMBL:AY142629 EMBL:AK316802 EMBL:AK317057 IPI:IPI00537668
RefSeq:NP_001032055.1 RefSeq:NP_199943.1 RefSeq:NP_851169.1
UniGene:At.22924 ProteinModelPortal:Q9LU44 SMR:Q9LU44 IntAct:Q9LU44
STRING:Q9LU44 PRIDE:Q9LU44 EnsemblPlants:AT5G51300.1
EnsemblPlants:AT5G51300.2 EnsemblPlants:AT5G51300.3 GeneID:835204
KEGG:ath:AT5G51300 TAIR:At5g51300 InParanoid:Q9LU44
PhylomeDB:Q9LU44 ProtClustDB:CLSN2687224 Genevestigator:Q9LU44
Uniprot:Q9LU44
Length = 804
Score = 119 (46.9 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 102 QEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTL 161
++D L N+F +GEI + DR TG KGY ++Y + + A A+ AMNG +TL
Sbjct: 492 EDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTL 551
Query: 162 TVDWAFSNGPSTGP 175
V A + P P
Sbjct: 552 AVRIAGKSPPPIAP 565
Score = 45 (20.9 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 43 TGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGW 90
+GG + T R R D + + + E GTD G G ++ W
Sbjct: 84 SGGEEETTSRRKRRSRWDPPPSESINNPSAEG-GTDSGTGTRKRKSRW 130
>ZFIN|ZDB-GENE-040426-1076 [details] [associations]
symbol:eif3g "eukaryotic translation initiation
factor 3, subunit G" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;ISS] [GO:0005852 "eukaryotic translation initiation
factor 3 complex" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1076 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 GO:GO:0005852
HSSP:O75821 GeneTree:ENSGT00510000047802 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
EMBL:AY648835 EMBL:BC049046 EMBL:BC153489 IPI:IPI00500209
RefSeq:NP_957293.1 UniGene:Dr.161 ProteinModelPortal:Q6DRC4
SMR:Q6DRC4 STRING:Q6DRC4 PRIDE:Q6DRC4 Ensembl:ENSDART00000018071
Ensembl:ENSDART00000127487 GeneID:393974 KEGG:dre:393974
InParanoid:Q7ZUH3 OMA:NSEFDAP NextBio:20814945 Bgee:Q6DRC4
Uniprot:Q6DRC4
Length = 293
Score = 133 (51.9 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 33/94 (35%), Positives = 49/94 (52%)
Query: 76 GTDGGPGPQ---RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKG 132
GT G Q R+ + I VT + E+ +E DLQ +F +G I ++L D+ TG KG
Sbjct: 195 GTRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKNTGQSKG 254
Query: 133 YALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166
+A I + E+A AI ++G L V+WA
Sbjct: 255 FAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 288
>UNIPROTKB|Q641B2 [details] [associations]
symbol:eif3g-b "Eukaryotic translation initiation factor 3
subunit G-B" species:8355 "Xenopus laevis" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
HSSP:O75821 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 HOVERGEN:HBG026850 EMBL:BC082427
RefSeq:NP_001087888.1 UniGene:Xl.3547 ProteinModelPortal:Q641B2
SMR:Q641B2 PRIDE:Q641B2 GeneID:447749 KEGG:xla:447749
Xenbase:XB-GENE-6070476 Uniprot:Q641B2
Length = 308
Score = 132 (51.5 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEE 143
+R+ + I VT + E+ +E DLQ +F +G I ++L D+ TG KG+A I + E+
Sbjct: 221 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 280
Query: 144 AQNAITAMNGGELLTQTLTVDWAFSNGPST 173
A AI ++G L V+WA PST
Sbjct: 281 AARAIAGVSGFGYDHLILNVEWA---KPST 307
>UNIPROTKB|Q6DJI8 [details] [associations]
symbol:eif3g-a "Eukaryotic translation initiation factor 3
subunit G-A" species:8355 "Xenopus laevis" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
HSSP:O75821 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 EMBL:BC075190 RefSeq:NP_001086477.1
UniGene:Xl.48772 ProteinModelPortal:Q6DJI8 SMR:Q6DJI8 GeneID:446311
KEGG:xla:446311 CTD:446311 Xenbase:XB-GENE-6251503
HOVERGEN:HBG026850 Uniprot:Q6DJI8
Length = 308
Score = 132 (51.5 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEE 143
+R+ + I VT + E+ +E DLQ +F +G I ++L D+ TG KG+A I + E+
Sbjct: 221 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 280
Query: 144 AQNAITAMNGGELLTQTLTVDWAFSNGPST 173
A AI ++G L V+WA PST
Sbjct: 281 AARAIAGVSGFGYDHLILNVEWA---KPST 307
>UNIPROTKB|Q28CY2 [details] [associations]
symbol:eif3g "Eukaryotic translation initiation factor 3
subunit G" species:8364 "Xenopus (Silurana) tropicalis" [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743
eggNOG:COG0724 GO:GO:0005852 GeneTree:ENSGT00510000047802 KO:K03248
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
CTD:446311 HOVERGEN:HBG026850 HOGENOM:HOG000239560 EMBL:CR855811
EMBL:BC158150 RefSeq:NP_001016749.1 UniGene:Str.41964
ProteinModelPortal:Q28CY2 SMR:Q28CY2 STRING:Q28CY2
Ensembl:ENSXETT00000047701 GeneID:549503 KEGG:xtr:549503
Xenbase:XB-GENE-6070198 Bgee:Q28CY2 Uniprot:Q28CY2
Length = 310
Score = 132 (51.5 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEE 143
+R+ + I VT + E+ +E DLQ +F +G I ++L D+ TG KG+A I + E+
Sbjct: 223 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 282
Query: 144 AQNAITAMNGGELLTQTLTVDWAFSNGPST 173
A AI ++G L V+WA PST
Sbjct: 283 AARAIAGVSGFGYDHLILNVEWA---KPST 309
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 126 (49.4 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 34/98 (34%), Positives = 49/98 (50%)
Query: 73 ESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKG 132
E G G P RS + V G+ EE E+ L+ F G IR + DR TG KG
Sbjct: 569 ELQGPRGSPNA-RSQPSKTLFVKGLSEETTEETLKESFD--GSIR-ARIVTDRETGSSKG 624
Query: 133 YALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNG 170
+ +++ + E+A+ A AM GE+ +T+DWA G
Sbjct: 625 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 662
Score = 35 (17.4 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 39 KSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTD 78
K+ G PKK E DSE D +S G +
Sbjct: 6 KAGKNQGDPKKMAPPPKEVEEDSEDEEMSDDEEDDSSGEE 45
>UNIPROTKB|F2Z4J5 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9913 "Bos taurus" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
GeneTree:ENSGT00510000047802 InterPro:IPR024675 PANTHER:PTHR10352
Pfam:PF12353 IPI:IPI00700187 UniGene:Bt.49351 OMA:NSEFDAP
EMBL:DAAA02019449 ProteinModelPortal:F2Z4J5 SMR:F2Z4J5 PRIDE:F2Z4J5
Ensembl:ENSBTAT00000003545 Uniprot:F2Z4J5
Length = 320
Score = 132 (51.5 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEE 143
+R+ + I VT + E+ +E DLQ +F +G I ++L D+ TG KG+A I + E+
Sbjct: 233 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 292
Query: 144 AQNAITAMNGGELLTQTLTVDWAFSNGPST 173
A AI ++G L V+WA PST
Sbjct: 293 AARAIAGVSGFGYDHLILNVEWA---KPST 319
>UNIPROTKB|E2RGG6 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9615 "Canis lupus familiaris" [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
GeneTree:ENSGT00510000047802 KO:K03248 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 CTD:8666 OMA:NSEFDAP
EMBL:AAEX03012427 RefSeq:XP_854113.1 ProteinModelPortal:E2RGG6
Ensembl:ENSCAFT00000028426 GeneID:612971 KEGG:cfa:612971
NextBio:20898427 Uniprot:E2RGG6
Length = 320
Score = 132 (51.5 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEE 143
+R+ + I VT + E+ +E DLQ +F +G I ++L D+ TG KG+A I + E+
Sbjct: 233 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 292
Query: 144 AQNAITAMNGGELLTQTLTVDWAFSNGPST 173
A AI ++G L V+WA PST
Sbjct: 293 AARAIAGVSGFGYDHLILNVEWA---KPST 319
>UNIPROTKB|O75821 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IC;IDA;TAS]
[GO:0003743 "translation initiation factor activity"
evidence=IC;IDA] [GO:0005852 "eukaryotic translation initiation
factor 3 complex" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005829 "cytosol" evidence=TAS] [GO:0006412
"translation" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0044267 "cellular protein metabolic process"
evidence=TAS] Reactome:REACT_71 Reactome:REACT_17015
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 GO:GO:0048471 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724
GO:GO:0005852 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 HOVERGEN:HBG026850
Reactome:REACT_1762 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
OMA:NSEFDAP EMBL:U96074 EMBL:AF020833 EMBL:AF092453 EMBL:AF094850
EMBL:BT006889 EMBL:BC000733 EMBL:BC008469 IPI:IPI00290460
RefSeq:NP_003746.2 UniGene:Hs.529059 PDB:2CQ0 PDBsum:2CQ0
ProteinModelPortal:O75821 SMR:O75821 DIP:DIP-31115N IntAct:O75821
MINT:MINT-3001737 STRING:O75821 PhosphoSite:O75821 PaxDb:O75821
PeptideAtlas:O75821 PRIDE:O75821 DNASU:8666 Ensembl:ENST00000253108
GeneID:8666 KEGG:hsa:8666 UCSC:uc002mnd.3 GeneCards:GC19M010225
HGNC:HGNC:3274 HPA:HPA041997 MIM:603913 neXtProt:NX_O75821
PharmGKB:PA162384827 InParanoid:O75821 PhylomeDB:O75821
ChiTaRS:EIF3G EvolutionaryTrace:O75821 GenomeRNAi:8666
NextBio:32507 Bgee:O75821 CleanEx:HS_EIF3G Genevestigator:O75821
GermOnline:ENSG00000130811 Uniprot:O75821
Length = 320
Score = 132 (51.5 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEE 143
+R+ + I VT + E+ +E DLQ +F +G I ++L D+ TG KG+A I + E+
Sbjct: 233 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 292
Query: 144 AQNAITAMNGGELLTQTLTVDWAFSNGPST 173
A AI ++G L V+WA PST
Sbjct: 293 AARAIAGVSGFGYDHLILNVEWA---KPST 319
>MGI|MGI:1858258 [details] [associations]
symbol:Eif3g "eukaryotic translation initiation factor 3,
subunit G" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISO;IDA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=ISO;IDA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1858258 GO:GO:0005634 GO:GO:0048471
GO:GO:0000166 GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743
eggNOG:COG0724 GO:GO:0005852 GeneTree:ENSGT00510000047802 KO:K03248
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
OMA:NSEFDAP ChiTaRS:EIF3G EMBL:U70733 EMBL:AF108214 EMBL:BC008511
IPI:IPI00622371 RefSeq:NP_058572.2 UniGene:Mm.427309
ProteinModelPortal:Q9Z1D1 SMR:Q9Z1D1 IntAct:Q9Z1D1
MINT:MINT-1572167 STRING:Q9Z1D1 PhosphoSite:Q9Z1D1
REPRODUCTION-2DPAGE:Q9Z1D1 PaxDb:Q9Z1D1 PRIDE:Q9Z1D1
Ensembl:ENSMUST00000004206 GeneID:53356 KEGG:mmu:53356
InParanoid:Q9Z1D1 NextBio:310169 Bgee:Q9Z1D1 Genevestigator:Q9Z1D1
GermOnline:ENSMUSG00000070319 Uniprot:Q9Z1D1
Length = 320
Score = 132 (51.5 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEE 143
+R+ + I VT + E+ +E DLQ +F +G I ++L D+ TG KG+A I + E+
Sbjct: 233 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 292
Query: 144 AQNAITAMNGGELLTQTLTVDWAFSNGPST 173
A AI ++G L V+WA PST
Sbjct: 293 AARAIAGVSGFGYDHLILNVEWA---KPST 319
>RGD|1307191 [details] [associations]
symbol:Eif3g "eukaryotic translation initiation factor 3,
subunit G" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISO;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005852 "eukaryotic translation
initiation factor 3 complex" evidence=IEA;ISO;ISS] [GO:0006413
"translational initiation" evidence=ISO;ISS] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 RGD:1307191
GO:GO:0005634 GO:GO:0048471 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 EMBL:CH473993
GO:GO:0005852 HSSP:O75821 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
EMBL:BC086383 IPI:IPI00365487 RefSeq:NP_001013113.1
UniGene:Rn.107880 ProteinModelPortal:Q5RK09 SMR:Q5RK09
STRING:Q5RK09 PhosphoSite:Q5RK09 PRIDE:Q5RK09 GeneID:298700
KEGG:rno:298700 UCSC:RGD:1307191 InParanoid:Q5RK09 NextBio:644231
ArrayExpress:Q5RK09 Genevestigator:Q5RK09 Uniprot:Q5RK09
Length = 320
Score = 132 (51.5 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEE 143
+R+ + I VT + E+ +E DLQ +F +G I ++L D+ TG KG+A I + E+
Sbjct: 233 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 292
Query: 144 AQNAITAMNGGELLTQTLTVDWAFSNGPST 173
A AI ++G L V+WA PST
Sbjct: 293 AARAIAGVSGFGYDHLILNVEWA---KPST 319
>UNIPROTKB|Q5RK09 [details] [associations]
symbol:Eif3g "Eukaryotic translation initiation factor 3
subunit G" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 RGD:1307191
GO:GO:0005634 GO:GO:0048471 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 EMBL:CH473993
GO:GO:0005852 HSSP:O75821 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
EMBL:BC086383 IPI:IPI00365487 RefSeq:NP_001013113.1
UniGene:Rn.107880 ProteinModelPortal:Q5RK09 SMR:Q5RK09
STRING:Q5RK09 PhosphoSite:Q5RK09 PRIDE:Q5RK09 GeneID:298700
KEGG:rno:298700 UCSC:RGD:1307191 InParanoid:Q5RK09 NextBio:644231
ArrayExpress:Q5RK09 Genevestigator:Q5RK09 Uniprot:Q5RK09
Length = 320
Score = 132 (51.5 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEE 143
+R+ + I VT + E+ +E DLQ +F +G I ++L D+ TG KG+A I + E+
Sbjct: 233 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 292
Query: 144 AQNAITAMNGGELLTQTLTVDWAFSNGPST 173
A AI ++G L V+WA PST
Sbjct: 293 AARAIAGVSGFGYDHLILNVEWA---KPST 319
>UNIPROTKB|F1S3I3 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9823 "Sus scrofa" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
GeneTree:ENSGT00510000047802 InterPro:IPR024675 PANTHER:PTHR10352
Pfam:PF12353 OMA:NSEFDAP EMBL:CU462940 Ensembl:ENSSSCT00000014925
Uniprot:F1S3I3
Length = 322
Score = 132 (51.5 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEE 143
+R+ + I VT + E+ +E DLQ +F +G I ++L D+ TG KG+A I + E+
Sbjct: 235 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 294
Query: 144 AQNAITAMNGGELLTQTLTVDWAFSNGPST 173
A AI ++G L V+WA PST
Sbjct: 295 AARAIAGVSGFGYDHLILNVEWA---KPST 321
>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
symbol:tra2a "transformer-2 alpha" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
Length = 297
Score = 131 (51.2 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 38/150 (25%), Positives = 69/150 (46%)
Query: 29 SSPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRN---FESLGTDGGPGPQR 85
S R+ + KS +P+ + R +S R R+ +S G R
Sbjct: 69 SRSRSHSHRKKSRSRSYSPESRRRRSRSASPNSNRRKHAGSRSSYSHDSKKDSHNQGDAR 128
Query: 86 SIE--GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEE 143
+ + V G+ E DL+ VF YG + +++ D+RTG +G+A + +E+ ++
Sbjct: 129 ANPDPNTCLGVFGLSLYTTERDLREVFSRYGSLAGVNVVYDQRTGRSRGFAFVYFEHIDD 188
Query: 144 AQNAITAMNGGELLTQTLTVDWAFSNGPST 173
A+ A+ NG EL + + VD++ + P T
Sbjct: 189 AKEAMERANGMELDGRRIRVDYSITKRPHT 218
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 134 (52.2 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 81 PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN 140
P RS+ + V + EA E+ L+++F E G + + L DR TG KGY EY++
Sbjct: 13 PAMDRSLRS--VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD 70
Query: 141 FEEAQNAITAMNGGELLTQTLTVDWAFS 168
E A +A+ +NG E + L VD A S
Sbjct: 71 QETALSAMRNLNGREFSGRALRVDNAAS 98
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 121 (47.7 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 32/98 (32%), Positives = 49/98 (50%)
Query: 73 ESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKG 132
E G G P RS + V G+ E+ E+ L+ F G +R + DR TG KG
Sbjct: 559 ELQGPRGSPNA-RSQPSKTLFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKG 614
Query: 133 YALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNG 170
+ +++ + E+A+ A AM GE+ +T+DWA G
Sbjct: 615 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 652
Score = 39 (18.8 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 11/47 (23%), Positives = 18/47 (38%)
Query: 27 ASSSPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFE 73
A + P P K A+T K +E++D + D + E
Sbjct: 113 AQAKALVPTPGKKGAVTPAKGAKNGKNAKKEDSDEDEDEEDEDDSDE 159
Score = 34 (17.0 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 25 VDASSSPRAPQPKLKSAITGG 45
V + P P K+A+T G
Sbjct: 66 VSQTKKAAVPTPAKKAAVTPG 86
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 121 (47.7 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 32/98 (32%), Positives = 49/98 (50%)
Query: 73 ESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKG 132
E G G P RS + V G+ E+ E+ L+ F G +R + DR TG KG
Sbjct: 560 ELQGPRGSPNA-RSQPSKTLFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKG 615
Query: 133 YALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNG 170
+ +++ + E+A+ A AM GE+ +T+DWA G
Sbjct: 616 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 653
Score = 39 (18.8 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 11/47 (23%), Positives = 18/47 (38%)
Query: 27 ASSSPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFE 73
A + P P K A+T K +E++D + D + E
Sbjct: 113 AQAKALVPTPGKKGAVTPAKGAKNGKNAKKEDSDEDEDEEDEDDSDE 159
Score = 34 (17.0 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 25 VDASSSPRAPQPKLKSAITGG 45
V + P P K+A+T G
Sbjct: 66 VSQTKKAAVPTPAKKAAVTPG 86
>UNIPROTKB|E1BV45 [details] [associations]
symbol:RNPS1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GeneTree:ENSGT00700000104336 EMBL:AADN02049470
IPI:IPI00602926 ProteinModelPortal:E1BV45
Ensembl:ENSGALT00000015109 OMA:LNPPKCT Uniprot:E1BV45
Length = 243
Score = 113 (44.8 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 21/61 (34%), Positives = 40/61 (65%)
Query: 103 EDDLQNVFGEYGEIRNLHLNLDRRTGFV-KGYALIEYENFEEAQNAITAMNGGELLTQTL 161
+D + +F YG+I+ + + +DR + KGYA +E+EN ++A+ A+ M+GG++ Q +
Sbjct: 174 KDHIMEIFSTYGKIKMIDMPVDRLNPHLSKGYAYVEFENPDDAEKALKHMDGGQIDGQEI 233
Query: 162 T 162
T
Sbjct: 234 T 234
Score = 48 (22.0 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 16/61 (26%), Positives = 24/61 (39%)
Query: 27 ASSSPRAPQPKLKSAITGGAPKKT-KGRGFREEADSERH-SRLADRNFESLGTDGGPGPQ 84
ASS + + + S + G+ T G + S R S R+ S + G P P
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSSSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
Query: 85 R 85
R
Sbjct: 128 R 128
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 135 (52.6 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I V VH + +DD+++VF +G I++ L D TG KGY IEY+ + AQ+A+++M
Sbjct: 192 IYVASVHPDLSDDDIKSVFEAFGRIKSCSLARDPTTGKHKGYGFIEYDKAQSAQDAVSSM 251
Query: 152 NGGELLTQTLTV 163
N +L Q L V
Sbjct: 252 NLFDLGGQYLRV 263
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 131 (51.2 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 34/120 (28%), Positives = 55/120 (45%)
Query: 46 APKKTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDD 105
+P + G +A R S + + L PG S GW I + + ++A E
Sbjct: 202 SPARRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASS--GWCIFIYNLGQDADEGI 259
Query: 106 LQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165
L +FG +G + N+ + D T KG+ + N+EEA AI ++NG L + L V +
Sbjct: 260 LWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASLNGYRLGDKILQVSF 319
Score = 110 (43.8 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 25/90 (27%), Positives = 48/90 (53%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + + +++L+++F GEI + L D+ G GY + Y ++A+ AI +
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
NG L ++T+ V +A PS+ K N+
Sbjct: 82 NGLRLQSKTIKVSYA---RPSSEVIKDANL 108
Score = 106 (42.4 bits), Expect = 0.00040, P = 0.00040
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ ++G+ + D++++F +G I N + +D+ TG +G A I ++ EA+ AIT+
Sbjct: 108 LYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 152 NG 153
NG
Sbjct: 168 NG 169
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 133 (51.9 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 81 PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN 140
P RS+ + V + EA E+ L+++F E G + + L DR TG KGY EY++
Sbjct: 9 PAVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 141 FEEAQNAITAMNGGELLTQTLTVDWAFS 168
E A +A+ +NG E + L VD A S
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAAS 94
>UNIPROTKB|E2R4B2 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:DRYEEYD EMBL:AAEX03009371
Ensembl:ENSCAFT00000004456 Uniprot:E2R4B2
Length = 278
Score = 129 (50.5 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 34/129 (26%), Positives = 66/129 (51%)
Query: 48 KKTKGRGFREEADSER---HSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQED 104
++++ R + E R HS +++R + G+ P P + G V G+ E
Sbjct: 80 RRSRSRSYTPEYRRRRSRSHSPMSNRRRHT-GSRANPDPNTCL-G----VFGLSLYTTER 133
Query: 105 DLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164
DL+ VF YG + +++ D+RTG +G+A + +E ++++ A+ NG EL + + VD
Sbjct: 134 DLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 193
Query: 165 WAFSNGPST 173
++ + T
Sbjct: 194 YSITKRAHT 202
>UNIPROTKB|Q06AA6 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:CU928731 EMBL:DQ972958 RefSeq:NP_001070691.1 UniGene:Ssc.14084
SMR:Q06AA6 Ensembl:ENSSSCT00000016762 GeneID:768110 KEGG:ssc:768110
Uniprot:Q06AA6
Length = 279
Score = 129 (50.5 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 34/129 (26%), Positives = 66/129 (51%)
Query: 48 KKTKGRGFREEADSER---HSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQED 104
++++ R + E R HS +++R + G+ P P + G V G+ E
Sbjct: 80 RRSRSRSYTPEYRRRRSRSHSPMSNRRRHT-GSRANPDPNTCL-G----VFGLSLYTTER 133
Query: 105 DLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164
DL+ VF YG + +++ D+RTG +G+A + +E ++++ A+ NG EL + + VD
Sbjct: 134 DLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 193
Query: 165 WAFSNGPST 173
++ + T
Sbjct: 194 YSITKRAHT 202
>UNIPROTKB|Q2KJ71 [details] [associations]
symbol:TRA2A "Transformer 2 alpha homolog (Drosophila)"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 CTD:29896 HOVERGEN:HBG102125 KO:K12897
OMA:DRYEEYD OrthoDB:EOG4BVRW2 EMBL:DAAA02010222 EMBL:BC105489
IPI:IPI00695902 RefSeq:NP_001039845.1 UniGene:Bt.43563 SMR:Q2KJ71
STRING:Q2KJ71 Ensembl:ENSBTAT00000016756 GeneID:534586
KEGG:bta:534586 InParanoid:Q2KJ71 NextBio:20876456 Uniprot:Q2KJ71
Length = 281
Score = 129 (50.5 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 34/129 (26%), Positives = 66/129 (51%)
Query: 48 KKTKGRGFREEADSER---HSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQED 104
++++ R + E R HS +++R + G+ P P + G V G+ E
Sbjct: 80 RRSRSRSYTPEYRRRRSRSHSPMSNRRRHT-GSRANPDPNTCL-G----VFGLSLYTTER 133
Query: 105 DLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164
DL+ VF YG + +++ D+RTG +G+A + +E ++++ A+ NG EL + + VD
Sbjct: 134 DLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 193
Query: 165 WAFSNGPST 173
++ + T
Sbjct: 194 YSITKRAHT 202
>MGI|MGI:1933972 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933972 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 ChiTaRS:TRA2A EMBL:BC057448
IPI:IPI01008014 UniGene:Mm.196598 ProteinModelPortal:Q6PFR5
SMR:Q6PFR5 IntAct:Q6PFR5 STRING:Q6PFR5 PhosphoSite:Q6PFR5
PaxDb:Q6PFR5 PRIDE:Q6PFR5 UCSC:uc009bwm.1 InParanoid:Q6PFR5
CleanEx:MM_TRA2A Genevestigator:Q6PFR5
GermOnline:ENSMUSG00000029817 Uniprot:Q6PFR5
Length = 281
Score = 129 (50.5 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 34/129 (26%), Positives = 66/129 (51%)
Query: 48 KKTKGRGFREEADSER---HSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQED 104
++++ R + E R HS +++R + G+ P P + G V G+ E
Sbjct: 78 RRSRSRSYTPEYRRRRSRSHSPMSNRRRHT-GSRANPDPNTCL-G----VFGLSLYTTER 131
Query: 105 DLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164
DL+ VF YG + +++ D+RTG +G+A + +E ++++ A+ NG EL + + VD
Sbjct: 132 DLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 191
Query: 165 WAFSNGPST 173
++ + T
Sbjct: 192 YSITKRAHT 200
>UNIPROTKB|Q13595 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:U53209 EMBL:BC017094
IPI:IPI00013891 IPI:IPI00220447 RefSeq:NP_037425.1
UniGene:Hs.445652 ProteinModelPortal:Q13595 SMR:Q13595
IntAct:Q13595 MINT:MINT-1683046 STRING:Q13595 PhosphoSite:Q13595
DMDM:4033480 PaxDb:Q13595 PRIDE:Q13595 DNASU:29896
Ensembl:ENST00000297071 GeneID:29896 KEGG:hsa:29896 UCSC:uc003swi.3
CTD:29896 GeneCards:GC07M023544 HGNC:HGNC:16645 HPA:HPA054018
MIM:602718 neXtProt:NX_Q13595 PharmGKB:PA164726707
HOVERGEN:HBG102125 InParanoid:Q13595 KO:K12897 OMA:DRYEEYD
OrthoDB:EOG4BVRW2 PhylomeDB:Q13595 ChiTaRS:TRA2A GenomeRNAi:29896
NextBio:52459 ArrayExpress:Q13595 Bgee:Q13595 Genevestigator:Q13595
GermOnline:ENSG00000164548 Uniprot:Q13595
Length = 282
Score = 129 (50.5 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 34/129 (26%), Positives = 66/129 (51%)
Query: 48 KKTKGRGFREEADSER---HSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQED 104
++++ R + E R HS +++R + G+ P P + G V G+ E
Sbjct: 80 RRSRSRSYTPEYRRRRSRSHSPMSNRRRHT-GSRANPDPNTCL-G----VFGLSLYTTER 133
Query: 105 DLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164
DL+ VF YG + +++ D+RTG +G+A + +E ++++ A+ NG EL + + VD
Sbjct: 134 DLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 193
Query: 165 WAFSNGPST 173
++ + T
Sbjct: 194 YSITKRAHT 202
>RGD|1562563 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
Uniprot:B1WC25
Length = 282
Score = 129 (50.5 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 34/129 (26%), Positives = 66/129 (51%)
Query: 48 KKTKGRGFREEADSER---HSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQED 104
++++ R + E R HS +++R + G+ P P + G V G+ E
Sbjct: 78 RRSRSRSYTPEYRRRRSRSHSPMSNRRRHT-GSRANPDPNTCL-G----VFGLSLYTTER 131
Query: 105 DLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164
DL+ VF YG + +++ D+RTG +G+A + +E ++++ A+ NG EL + + VD
Sbjct: 132 DLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 191
Query: 165 WAFSNGPST 173
++ + T
Sbjct: 192 YSITKRAHT 200
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 131 (51.2 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 42/148 (28%), Positives = 71/148 (47%)
Query: 28 SSSPRAP-QPKLKSAITGGAPKKTKG-RGFREEADSERHSRLADRNFESLGTDGGPGPQR 85
S+S +A P L + +T A T+ G A R+S LA + L PG
Sbjct: 212 SNSAKAQIAPPLTAYLTPQAAAATRRLAGALPSAGRIRYSPLAG---DLLANSILPGNAM 268
Query: 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQ 145
+ GW I V + E +E+ L +FG +G ++++ + D +T KG+ + N++EA
Sbjct: 269 TGSGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAV 328
Query: 146 NAITAMNGGELLTQTLTVDWAFSNGPST 173
AI ++NG L + L V + + +T
Sbjct: 329 VAIQSLNGYTLGNRVLQVSFKTNKTKTT 356
Score = 109 (43.4 bits), Expect = 0.00017, P = 0.00017
Identities = 25/87 (28%), Positives = 43/87 (49%)
Query: 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQ 145
SI+G + V+G+ + + DL+ +F +G+I + D +G KG I ++ EA+
Sbjct: 126 SIKGANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAE 185
Query: 146 NAITAMNGGELLTQTLTVDWAFSNGPS 172
AI +NG + F+N PS
Sbjct: 186 RAIQELNGKTPKGYAEPITVKFANNPS 212
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 133 (51.9 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 81 PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN 140
P RS+ + V + EA E+ L+++F E G + + L DR TG KGY EY++
Sbjct: 9 PAVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 141 FEEAQNAITAMNGGELLTQTLTVDWAFS 168
E A +A+ +NG E + L VD A S
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAAS 94
>UNIPROTKB|J9P8Y3 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
Length = 558
Score = 134 (52.2 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 81 PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN 140
P RS+ + V + EA E+ L+++F E G + + L DR TG KGY EY++
Sbjct: 9 PAMDRSLRS--VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 141 FEEAQNAITAMNGGELLTQTLTVDWAFS 168
E A +A+ +NG E + L VD A S
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAAS 94
>FB|FBgn0032822 [details] [associations]
symbol:CG10466 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:COG0724 KO:K13107 GeneTree:ENSGT00600000084414 HSSP:P33240
RefSeq:NP_610003.1 UniGene:Dm.28254 ProteinModelPortal:Q9VIS0
SMR:Q9VIS0 IntAct:Q9VIS0 MINT:MINT-903544 STRING:Q9VIS0
PaxDb:Q9VIS0 PRIDE:Q9VIS0 EnsemblMetazoa:FBtr0081291
EnsemblMetazoa:FBtr0332178 GeneID:35268 KEGG:dme:Dmel_CG10466
UCSC:CG10466-RA FlyBase:FBgn0032822 InParanoid:Q9VIS0 OMA:YMEGCAP
OrthoDB:EOG4ZPCBP PhylomeDB:Q9VIS0 GenomeRNAi:35268 NextBio:792713
ArrayExpress:Q9VIS0 Bgee:Q9VIS0 Uniprot:Q9VIS0
Length = 154
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAIT 149
WI V G E DL VF +YGE+ N++L D +TG KG+ + YE+ A+
Sbjct: 35 WIF-VAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCFLCYEDQRSTVLAVD 93
Query: 150 AMNGGELLTQTLTVD 164
+NG ++L +TL VD
Sbjct: 94 NLNGIKILDRTLRVD 108
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+LV G+ + E L+ VF +YG+I + + DR T +G+ + +EN ++A++A+ AM
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 152 NGGELLTQTLTVDWA 166
NG + + + VD A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+LV G+ + E L+ VF +YG+I + + DR T +G+ + +EN ++A++A+ AM
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 152 NGGELLTQTLTVDWA 166
NG + + + VD A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+LV G+ + E L+ VF +YG+I + + DR T +G+ + +EN ++A++A+ AM
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 152 NGGELLTQTLTVDWA 166
NG + + + VD A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 100 EAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQ 159
EA E+ L+++F E G + + L DR TG KGY EY++ E A +A+ +NG E +
Sbjct: 7 EATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR 66
Query: 160 TLTVDWAFS 168
L VD A S
Sbjct: 67 ALRVDNAAS 75
>UNIPROTKB|Q9DDU8 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 HSSP:Q9V535 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 OMA:YDDREYY
EMBL:AADN02024287 EMBL:AF282244 IPI:IPI00571265 RefSeq:NP_990009.1
UniGene:Gga.4158 SMR:Q9DDU8 Ensembl:ENSGALT00000010555
GeneID:395403 KEGG:gga:395403 InParanoid:Q9DDU8 NextBio:20815487
Uniprot:Q9DDU8
Length = 289
Score = 129 (50.5 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 36/125 (28%), Positives = 63/125 (50%)
Query: 49 KTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQN 108
++ R +R S HS ++ R +G P P + G V G+ E DL+
Sbjct: 84 RSYSRDYRRR-HSHSHSPMSTRR-RHIGNRANPDPNCCL-G----VFGLSLYTTERDLRE 136
Query: 109 VFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168
VF +YG I ++ + D+++ +G+A + +EN E+A+ A NG EL + + VD++ +
Sbjct: 137 VFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVEDAKEAKERANGMELDGRRIRVDFSIT 196
Query: 169 NGPST 173
P T
Sbjct: 197 KRPHT 201
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 130 (50.8 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 34/120 (28%), Positives = 55/120 (45%)
Query: 46 APKKTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDD 105
+P + G +A R S + + L PG S GW I + + ++A E
Sbjct: 202 SPARRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASS--GWCIFIYNLGQDADEGI 259
Query: 106 LQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165
L +FG +G + N+ + D T KG+ + N+EEA AI ++NG L + L V +
Sbjct: 260 LWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSF 319
Score = 113 (44.8 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 25/90 (27%), Positives = 48/90 (53%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + + +D+L+++F GE+ + L D+ G GY + Y ++A+ AI +
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
NG L ++T+ V +A PS+ K N+
Sbjct: 82 NGLRLQSKTIKVSYA---RPSSEVIKDANL 108
Score = 108 (43.1 bits), Expect = 0.00020, P = 0.00020
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ ++G+ + D++++F +G I N + +D+ TG +G A I ++ EA+ AIT+
Sbjct: 108 LYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 152 NG 153
NG
Sbjct: 168 NG 169
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 130 (50.8 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 34/120 (28%), Positives = 55/120 (45%)
Query: 46 APKKTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDD 105
+P + G +A R S + + L PG S GW I + + ++A E
Sbjct: 202 SPARRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASS--GWCIFIYNLGQDADEGI 259
Query: 106 LQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165
L +FG +G + N+ + D T KG+ + N+EEA AI ++NG L + L V +
Sbjct: 260 LWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSF 319
Score = 113 (44.8 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 25/90 (27%), Positives = 48/90 (53%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + + +D+L+++F GE+ + L D+ G GY + Y ++A+ AI +
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
NG L ++T+ V +A PS+ K N+
Sbjct: 82 NGLRLQSKTIKVSYA---RPSSEVIKDANL 108
Score = 107 (42.7 bits), Expect = 0.00027, P = 0.00027
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ ++G+ + D++++F +G I N + +D+ TG +G A I ++ EA+ AIT+
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 152 NG 153
NG
Sbjct: 168 NG 169
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 130 (50.8 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 34/120 (28%), Positives = 55/120 (45%)
Query: 46 APKKTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDD 105
+P + G +A R S + + L PG S GW I + + ++A E
Sbjct: 202 SPARRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASS--GWCIFIYNLGQDADEGI 259
Query: 106 LQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165
L +FG +G + N+ + D T KG+ + N+EEA AI ++NG L + L V +
Sbjct: 260 LWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSF 319
Score = 113 (44.8 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 25/90 (27%), Positives = 48/90 (53%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + + +D+L+++F GE+ + L D+ G GY + Y ++A+ AI +
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
NG L ++T+ V +A PS+ K N+
Sbjct: 82 NGLRLQSKTIKVSYA---RPSSEVIKDANL 108
Score = 105 (42.0 bits), Expect = 0.00054, P = 0.00054
Identities = 19/62 (30%), Positives = 36/62 (58%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ ++G+ + D++++F +G I N + +D+ TG +G A I ++ EA+ AIT
Sbjct: 108 LYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNF 167
Query: 152 NG 153
NG
Sbjct: 168 NG 169
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 130 (50.8 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 34/120 (28%), Positives = 55/120 (45%)
Query: 46 APKKTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDD 105
+P + G +A R S + + L PG S GW I + + ++A E
Sbjct: 210 SPARRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASS--GWCIFIYNLGQDADEGI 267
Query: 106 LQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165
L +FG +G + N+ + D T KG+ + N+EEA AI ++NG L + L V +
Sbjct: 268 LWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSF 327
Score = 113 (44.8 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 25/90 (27%), Positives = 48/90 (53%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + + +D+L+++F GE+ + L D+ G GY + Y ++A+ AI +
Sbjct: 30 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 89
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
NG L ++T+ V +A PS+ K N+
Sbjct: 90 NGLRLQSKTIKVSYA---RPSSEVIKDANL 116
Score = 107 (42.7 bits), Expect = 0.00029, P = 0.00029
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ ++G+ + D++++F +G I N + +D+ TG +G A I ++ EA+ AIT+
Sbjct: 116 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 175
Query: 152 NG 153
NG
Sbjct: 176 NG 177
>UNIPROTKB|H3BMM9 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC009065 HGNC:HGNC:10080 ChiTaRS:RNPS1 Ensembl:ENST00000561518
Bgee:H3BMM9 Uniprot:H3BMM9
Length = 284
Score = 114 (45.2 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 103 EDDLQNVFGEYGEIRNLHLNLDRRTGFV-KGYALIEYENFEEAQNAITAMNGGELLTQTL 161
+D + +F YG+I+ + + ++R + KGYA +E+EN +EA+ A+ M+GG++ Q +
Sbjct: 174 KDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
Query: 162 TVDWAFSNGPSTGP 175
T + P P
Sbjct: 234 TATAVLAPWPRPPP 247
Score = 47 (21.6 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 16/61 (26%), Positives = 24/61 (39%)
Query: 27 ASSSPRAPQPKLKSAITGGAPKKT-KGRGFREEADSERH-SRLADRNFESLGTDGGPGPQ 84
ASS + + + S + G+ T G + S R S R+ S + G P P
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
Query: 85 R 85
R
Sbjct: 128 R 128
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 133 (51.9 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 81 PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN 140
P RS+ + V + EA E+ L+++F E G + + L DR TG KGY EY++
Sbjct: 9 PAVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 141 FEEAQNAITAMNGGELLTQTLTVDWAFS 168
E A +A+ +NG E + L VD A S
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAAS 94
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 130 (50.8 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 35/123 (28%), Positives = 57/123 (46%)
Query: 46 APKKTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDD 105
+P + G +A R S + + S+ + S GW I V + ++A E
Sbjct: 213 SPARRFGGPVHHQAQRFRFSPMGVDHMSSISSVNVASSATS--GWCIFVYNLGQDADEGI 270
Query: 106 LQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165
L +FG +G + N+ + D T KG+ + N+EEA AI ++NG L +TL V +
Sbjct: 271 LWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVSF 330
Query: 166 AFS 168
S
Sbjct: 331 KTS 333
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 122 (48.0 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 32/98 (32%), Positives = 49/98 (50%)
Query: 73 ESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKG 132
E G G P RS + V G+ E+ E+ L+ F G +R + DR TG KG
Sbjct: 556 ELQGPRGSPNA-RSQPSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKG 611
Query: 133 YALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNG 170
+ +++ + E+A+ A AM GE+ +T+DWA G
Sbjct: 612 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 649
Score = 36 (17.7 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 39 KSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTD 78
K+ G PKK E DSE D +S G +
Sbjct: 6 KAGKNQGDPKKMAPPPKEVEEDSEDEEMSEDEEDDSSGEE 45
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 122 (48.0 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 32/98 (32%), Positives = 49/98 (50%)
Query: 73 ESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKG 132
E G G P RS + V G+ E+ E+ L+ F G +R + DR TG KG
Sbjct: 557 ELQGPRGSPNA-RSQPSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKG 612
Query: 133 YALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNG 170
+ +++ + E+A+ A AM GE+ +T+DWA G
Sbjct: 613 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 650
Score = 36 (17.7 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 39 KSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTD 78
K+ G PKK E DSE D +S G +
Sbjct: 6 KAGKNQGDPKKMAPPPKEVEEDSEDEEMSEDEEDDSSGEE 45
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 122 (48.0 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 32/98 (32%), Positives = 49/98 (50%)
Query: 73 ESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKG 132
E G G P RS + V G+ E+ E+ L+ F G +R + DR TG KG
Sbjct: 558 ELQGPRGSPNA-RSQPSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKG 613
Query: 133 YALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNG 170
+ +++ + E+A+ A AM GE+ +T+DWA G
Sbjct: 614 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 651
Score = 36 (17.7 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 39 KSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTD 78
K+ G PKK E DSE D +S G +
Sbjct: 6 KAGKNQGDPKKMAPPPKEVEEDSEDEEMSEDEEDDSSGEE 45
>UNIPROTKB|F1SD01 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
Uniprot:F1SD01
Length = 615
Score = 134 (52.2 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 81 PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN 140
P RS+ + V + EA E+ L+++F E G + + L DR TG KGY EY++
Sbjct: 9 PAMDRSLRS--VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 141 FEEAQNAITAMNGGELLTQTLTVDWAFS 168
E A +A+ +NG E + L VD A S
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAAS 94
>UNIPROTKB|Q9H0L4 [details] [associations]
symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
GermOnline:ENSG00000177613 Uniprot:Q9H0L4
Length = 616
Score = 134 (52.2 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 81 PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN 140
P RS+ + V + EA E+ L+++F E G + + L DR TG KGY EY++
Sbjct: 9 PAMDRSLRS--VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 141 FEEAQNAITAMNGGELLTQTLTVDWAFS 168
E A +A+ +NG E + L VD A S
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAAS 94
>TAIR|locus:2153659 [details] [associations]
symbol:EIF3G2 "eukaryotic translation initiation factor
3G2" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006413 "translational initiation"
evidence=TAS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005852 "eukaryotic translation initiation factor 3 complex"
evidence=ISS] [GO:0006333 "chromatin assembly or disassembly"
evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0042991 "transcription factor import into
nucleus" evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00343 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003743 GO:GO:0005852 EMBL:AB017060 KO:K03248
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOGENOM:HOG000239560 HSSP:P11940 IPI:IPI00528477 RefSeq:NP_196219.3
UniGene:At.20561 ProteinModelPortal:Q9FI86 SMR:Q9FI86 STRING:Q9FI86
PRIDE:Q9FI86 EnsemblPlants:AT5G06000.1 GeneID:830487
KEGG:ath:AT5G06000 TAIR:At5g06000 InParanoid:Q9FI86 OMA:KFNDEGK
PhylomeDB:Q9FI86 ProtClustDB:CLSN2925586 Genevestigator:Q9FI86
Uniprot:Q9FI86
Length = 308
Score = 117 (46.2 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 21/75 (28%), Positives = 41/75 (54%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ VT + E+ + DL +F +G + H+ +D++T +G+ + + + E+AQ AI +
Sbjct: 208 VRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKL 267
Query: 152 NGGELLTQTLTVDWA 166
NG L V+W+
Sbjct: 268 NGYGYDNLILRVEWS 282
Score = 36 (17.7 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 39 KSAITGGAPKKTKGRGFREEADSERHSRLADRNFESL 75
K A+T A ++ F + A E S L R+ E +
Sbjct: 66 KRALTKQAVERRSWNKFGDAAHEESSSYLTMRSTEDI 102
>UNIPROTKB|F1NPM7 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
Length = 277
Score = 128 (50.1 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 34/129 (26%), Positives = 66/129 (51%)
Query: 48 KKTKGRGFREEADSER---HSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQED 104
++++ R + E R HS +++R + G+ P P + G V G+ E
Sbjct: 82 RRSRSRSYTPEYRRRRSRSHSPMSNRRRHT-GSRANPDPNTCL-G----VFGLSLYTTER 135
Query: 105 DLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164
DL+ VF YG + +++ D+RTG +G+A + +E ++++ A+ NG EL + + VD
Sbjct: 136 DLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHANGMELDGRRIRVD 195
Query: 165 WAFSNGPST 173
++ + T
Sbjct: 196 YSITKRAHT 204
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 134 (52.2 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 81 PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN 140
P RS+ + V + EA E+ L+++F E G + + L DR TG KGY EY++
Sbjct: 9 PAMDRSLRS--VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 141 FEEAQNAITAMNGGELLTQTLTVDWAFS 168
E A +A+ +NG E + L VD A S
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAAS 94
>UNIPROTKB|G3MZ78 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
Length = 632
Score = 134 (52.2 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 81 PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN 140
P RS+ + V + EA E+ L+++F E G + + L DR TG KGY EY++
Sbjct: 9 PAMDRSLRS--VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 141 FEEAQNAITAMNGGELLTQTLTVDWAFS 168
E A +A+ +NG E + L VD A S
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAAS 94
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 134 (52.2 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 81 PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN 140
P RS+ + V + EA E+ L+++F E G + + L DR TG KGY EY++
Sbjct: 9 PAMDRSLRS--VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 141 FEEAQNAITAMNGGELLTQTLTVDWAFS 168
E A +A+ +NG E + L VD A S
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAAS 94
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 130 (50.8 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 34/120 (28%), Positives = 55/120 (45%)
Query: 46 APKKTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDD 105
+P + G +A R S + + L PG S GW I + + ++A E
Sbjct: 229 SPARRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASS--GWCIFIYNLGQDADEGI 286
Query: 106 LQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165
L +FG +G + N+ + D T KG+ + N+EEA AI ++NG L + L V +
Sbjct: 287 LWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSF 346
Score = 113 (44.8 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 25/90 (27%), Positives = 48/90 (53%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + + +D+L+++F GE+ + L D+ G GY + Y ++A+ AI +
Sbjct: 49 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 108
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
NG L ++T+ V +A PS+ K N+
Sbjct: 109 NGLRLQSKTIKVSYA---RPSSEVIKDANL 135
Score = 107 (42.7 bits), Expect = 0.00032, P = 0.00031
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ ++G+ + D++++F +G I N + +D+ TG +G A I ++ EA+ AIT+
Sbjct: 135 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 194
Query: 152 NG 153
NG
Sbjct: 195 NG 196
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 130 (50.8 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 40/122 (32%), Positives = 62/122 (50%)
Query: 55 FREEADSERHSRLAD----RNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVF 110
F E DS+R ++ + RN + PG + SI+ + VT + +D L +F
Sbjct: 173 FTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE-SIKDTNLYVTNLPRTITDDQLDTIF 231
Query: 111 GEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNG--GELLTQTLTVDWAFS 168
G+YG I ++ D+ TG +G A + Y EEAQ AI+A+N E +Q L+V A
Sbjct: 232 GKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAEE 291
Query: 169 NG 170
+G
Sbjct: 292 HG 293
>UNIPROTKB|F1S1L9 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
Uniprot:F1S1L9
Length = 551
Score = 133 (51.9 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 81 PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN 140
P RS+ + V + EA E+ L+++F E G + + L DR TG KGY EY++
Sbjct: 9 PAVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 141 FEEAQNAITAMNGGELLTQTLTVDWAFS 168
E A +A+ +NG E + L VD A S
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAAS 94
>UNIPROTKB|K7GQE7 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
Length = 555
Score = 133 (51.9 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 81 PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN 140
P RS+ + V + EA E+ L+++F E G + + L DR TG KGY EY++
Sbjct: 9 PAVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 141 FEEAQNAITAMNGGELLTQTLTVDWAFS 168
E A +A+ +NG E + L VD A S
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAAS 94
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 27/87 (31%), Positives = 50/87 (57%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ + G++ E ED L+ F +YG I + + DR T +G+ + +EN ++A++A+ AM
Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66
Query: 152 NGGELLTQTLTVDWAF-SNGPSTGPFK 177
NG + + + VD A S+G G ++
Sbjct: 67 NGKSVDGRQIRVDQAGKSSGERRGGYR 93
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 26/87 (29%), Positives = 52/87 (59%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ + G++ + E+ L+ VF +YG+I + + DR T +G+ + +EN ++A++A+ AM
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 152 NGGELLTQTLTVDWAF-SNGPSTGPFK 177
NG + + + VD A S+G G ++
Sbjct: 67 NGKAVDGRQIRVDQAGKSSGDRRGGYR 93
>UNIPROTKB|Q8HXM1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
Uniprot:Q8HXM1
Length = 572
Score = 133 (51.9 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 81 PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN 140
P RS+ + V + EA E+ L+++F E G + + L DR TG KGY EY++
Sbjct: 9 PAVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 141 FEEAQNAITAMNGGELLTQTLTVDWAFS 168
E A +A+ +NG E + L VD A S
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAAS 94
>UNIPROTKB|K7GS58 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
Length = 572
Score = 133 (51.9 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 81 PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN 140
P RS+ + V + EA E+ L+++F E G + + L DR TG KGY EY++
Sbjct: 9 PAVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 141 FEEAQNAITAMNGGELLTQTLTVDWAFS 168
E A +A+ +NG E + L VD A S
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAAS 94
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 130 (50.8 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 34/103 (33%), Positives = 49/103 (47%)
Query: 72 FESLGTDG-----GPGPQRSIEG-WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDR 125
F + DG G GP R G W I V + EA E L +FG +G + N+ + D
Sbjct: 260 FSPIAIDGMSGLAGVGPVRGCGGGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDF 319
Query: 126 RTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168
T KG+ + N++EA AI ++NG L + L V + S
Sbjct: 320 TTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTS 362
Score = 123 (48.4 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 30/107 (28%), Positives = 56/107 (52%)
Query: 75 LGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYA 134
LGT+G ++ ++V + + +D+ +++FG G+I + L D+ TG GY
Sbjct: 28 LGTNGATDDSKTN----LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 83
Query: 135 LIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
+ Y + +A AI +NG +L T+T+ V +A PS+ + N+
Sbjct: 84 FVNYSDPNDADKAINTLNGLKLQTKTIKVSYA---RPSSASIRDANL 127
Score = 108 (43.1 bits), Expect = 0.00024, P = 0.00024
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQ 145
SI + V+G+ + + +++ +F +YG I + +D+ TG +G I ++ EA+
Sbjct: 121 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180
Query: 146 NAITAMNGGELLTQTLTVDWAFSNGPS 172
AI +NG + L + F+N PS
Sbjct: 181 EAIKGLNGQKPLGAAEPITVKFANNPS 207
>UNIPROTKB|E2RP40 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
KEGG:cfa:492015 Uniprot:E2RP40
Length = 577
Score = 133 (51.9 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 81 PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN 140
P RS+ + V + EA E+ L+++F E G + + L DR TG KGY EY++
Sbjct: 9 PAVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 141 FEEAQNAITAMNGGELLTQTLTVDWAFS 168
E A +A+ +NG E + L VD A S
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAAS 94
>UNIPROTKB|P33240 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
Uniprot:P33240
Length = 577
Score = 133 (51.9 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 81 PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN 140
P RS+ + V + EA E+ L+++F E G + + L DR TG KGY EY++
Sbjct: 9 PAVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 141 FEEAQNAITAMNGGELLTQTLTVDWAFS 168
E A +A+ +NG E + L VD A S
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAAS 94
>UNIPROTKB|Q5RDA3 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
Length = 577
Score = 133 (51.9 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 81 PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN 140
P RS+ + V + EA E+ L+++F E G + + L DR TG KGY EY++
Sbjct: 9 PAVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 141 FEEAQNAITAMNGGELLTQTLTVDWAFS 168
E A +A+ +NG E + L VD A S
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAAS 94
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 133 (51.9 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 81 PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN 140
P RS+ + V + EA E+ L+++F E G + + L DR TG KGY EY++
Sbjct: 9 PAVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 141 FEEAQNAITAMNGGELLTQTLTVDWAFS 168
E A +A+ +NG E + L VD A S
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAAS 94
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 129 (50.5 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 34/123 (27%), Positives = 57/123 (46%)
Query: 46 APKKTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDD 105
+P + G +A R S + + S+ + S GW I + + ++A E
Sbjct: 202 SPARRFGGPVHHQAQRFRFSPMGVDHMSSISSVNVASSASS--GWCIFIYNLGQDADEGI 259
Query: 106 LQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165
L +FG +G + N+ + D T KG+ + N+EEA AI ++NG L +TL V +
Sbjct: 260 LWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVSF 319
Query: 166 AFS 168
S
Sbjct: 320 KTS 322
Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/90 (28%), Positives = 49/90 (54%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + + +D+L+++F GE+ + L D+ G GY + Y N ++A+ AI +
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTL 81
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
NG L ++T+ V +A PS+ K N+
Sbjct: 82 NGLRLQSKTIKVSFA---RPSSETIKDANL 108
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 133 (51.9 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 81 PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN 140
P RS+ + V + EA E+ L+++F E G + + L DR TG KGY EY++
Sbjct: 9 PAVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 141 FEEAQNAITAMNGGELLTQTLTVDWAFS 168
E A +A+ +NG E + L VD A S
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAAS 94
>UNIPROTKB|F1MVI1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
Uniprot:F1MVI1
Length = 592
Score = 133 (51.9 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 81 PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN 140
P RS+ + V + EA E+ L+++F E G + + L DR TG KGY EY++
Sbjct: 9 PAVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 141 FEEAQNAITAMNGGELLTQTLTVDWAFS 168
E A +A+ +NG E + L VD A S
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAAS 94
>UNIPROTKB|I3LE23 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
Length = 592
Score = 133 (51.9 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 81 PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN 140
P RS+ + V + EA E+ L+++F E G + + L DR TG KGY EY++
Sbjct: 9 PAVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 141 FEEAQNAITAMNGGELLTQTLTVDWAFS 168
E A +A+ +NG E + L VD A S
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAAS 94
>UNIPROTKB|E7EWR4 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
Uniprot:E7EWR4
Length = 597
Score = 133 (51.9 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 81 PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN 140
P RS+ + V + EA E+ L+++F E G + + L DR TG KGY EY++
Sbjct: 9 PAVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 141 FEEAQNAITAMNGGELLTQTLTVDWAFS 168
E A +A+ +NG E + L VD A S
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAAS 94
>UNIPROTKB|H3BTC0 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC009065 HGNC:HGNC:10080 ChiTaRS:RNPS1 Ensembl:ENST00000565870
Bgee:H3BTC0 Uniprot:H3BTC0
Length = 302
Score = 114 (45.2 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 103 EDDLQNVFGEYGEIRNLHLNLDRRTGFV-KGYALIEYENFEEAQNAITAMNGGELLTQTL 161
+D + +F YG+I+ + + ++R + KGYA +E+EN +EA+ A+ M+GG++ Q +
Sbjct: 174 KDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
Query: 162 TVDWAFSNGPSTGP 175
T + P P
Sbjct: 234 TATAVLAPWPRPPP 247
Score = 47 (21.6 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 16/61 (26%), Positives = 24/61 (39%)
Query: 27 ASSSPRAPQPKLKSAITGGAPKKT-KGRGFREEADSERH-SRLADRNFESLGTDGGPGPQ 84
ASS + + + S + G+ T G + S R S R+ S + G P P
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
Query: 85 R 85
R
Sbjct: 128 R 128
>UNIPROTKB|E1C8T0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
Uniprot:E1C8T0
Length = 608
Score = 133 (51.9 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 81 PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN 140
P RS+ + V + EA E+ L+++F E G + + L DR TG KGY EY++
Sbjct: 9 PAVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 141 FEEAQNAITAMNGGELLTQTLTVDWAFS 168
E A +A+ +NG E + L VD A S
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAAS 94
>UNIPROTKB|A6QR16 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9913 "Bos taurus" [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003730 GeneTree:ENSGT00700000104336 EMBL:BC150075
IPI:IPI00867269 RefSeq:NP_001095311.1 UniGene:Bt.20502
ProteinModelPortal:A6QR16 STRING:A6QR16 Ensembl:ENSBTAT00000013151
GeneID:504506 KEGG:bta:504506 CTD:10921 eggNOG:NOG331533
HOGENOM:HOG000044325 InParanoid:A6QR16 KO:K14325 OMA:TKRKDRT
OrthoDB:EOG44J2KM NextBio:20866696 Uniprot:A6QR16
Length = 305
Score = 114 (45.2 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 103 EDDLQNVFGEYGEIRNLHLNLDRRTGFV-KGYALIEYENFEEAQNAITAMNGGELLTQTL 161
+D + +F YG+I+ + + ++R + KGYA +E+EN +EA+ A+ M+GG++ Q +
Sbjct: 174 KDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
Query: 162 TVDWAFSNGPSTGP 175
T + P P
Sbjct: 234 TATAVLAPWPRPPP 247
Score = 47 (21.6 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 16/61 (26%), Positives = 24/61 (39%)
Query: 27 ASSSPRAPQPKLKSAITGGAPKKT-KGRGFREEADSERH-SRLADRNFESLGTDGGPGPQ 84
ASS + + + S + G+ T G + S R S R+ S + G P P
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
Query: 85 R 85
R
Sbjct: 128 R 128
>UNIPROTKB|F6XEW2 [details] [associations]
symbol:RNPS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 CTD:10921 KO:K14325 OMA:TKRKDRT
Ensembl:ENSCAFT00000030839 EMBL:AAEX03004619 RefSeq:XP_537005.1
ProteinModelPortal:F6XEW2 GeneID:479880 KEGG:cfa:479880
Uniprot:F6XEW2
Length = 305
Score = 114 (45.2 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 103 EDDLQNVFGEYGEIRNLHLNLDRRTGFV-KGYALIEYENFEEAQNAITAMNGGELLTQTL 161
+D + +F YG+I+ + + ++R + KGYA +E+EN +EA+ A+ M+GG++ Q +
Sbjct: 174 KDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
Query: 162 TVDWAFSNGPSTGP 175
T + P P
Sbjct: 234 TATAVLAPWPRPPP 247
Score = 47 (21.6 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 16/61 (26%), Positives = 24/61 (39%)
Query: 27 ASSSPRAPQPKLKSAITGGAPKKT-KGRGFREEADSERH-SRLADRNFESLGTDGGPGPQ 84
ASS + + + S + G+ T G + S R S R+ S + G P P
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
Query: 85 R 85
R
Sbjct: 128 R 128
>UNIPROTKB|Q15287 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0035145
"exon-exon junction complex" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IMP;IDA;TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0016607
Reactome:REACT_1675 Gene3D:3.30.70.330 EMBL:CH471112
TCDB:3.A.18.1.1 GO:GO:0003730 GO:GO:0006406 GO:GO:0000398
Reactome:REACT_1788 EMBL:AC009065 GO:GO:0006369 GO:GO:0031124
Reactome:REACT_78 CTD:10921 eggNOG:NOG331533 KO:K14325 OMA:TKRKDRT
OrthoDB:EOG44J2KM EMBL:L37368 EMBL:AF015608 EMBL:AF274003
EMBL:AK289955 EMBL:AK293343 EMBL:AK303100 EMBL:AK316132
EMBL:BC001659 EMBL:BC001838 EMBL:BC108316 EMBL:AF247662
IPI:IPI00033561 IPI:IPI00479871 IPI:IPI00783594 PIR:JC4525
RefSeq:NP_006702.1 RefSeq:NP_542161.1 UniGene:Hs.355643
UniGene:Hs.507343 UniGene:Hs.733012 PDB:4A8X PDBsum:4A8X
ProteinModelPortal:Q15287 SMR:Q15287 DIP:DIP-32943N IntAct:Q15287
MINT:MINT-1474621 STRING:Q15287 PhosphoSite:Q15287 DMDM:74754492
PaxDb:Q15287 PRIDE:Q15287 DNASU:10921 Ensembl:ENST00000301730
Ensembl:ENST00000320225 Ensembl:ENST00000397086
Ensembl:ENST00000565678 Ensembl:ENST00000566458
Ensembl:ENST00000568631 GeneID:10921 KEGG:hsa:10921 UCSC:uc002cpt.3
UCSC:uc002cpx.3 GeneCards:GC16M002303 H-InvDB:HIX0031789
HGNC:HGNC:10080 HPA:HPA044014 MIM:606447 neXtProt:NX_Q15287
PharmGKB:PA34453 HOVERGEN:HBG053138 InParanoid:Q15287 ChiTaRS:RNPS1
GenomeRNAi:10921 NextBio:41487 ArrayExpress:Q15287 Bgee:Q15287
CleanEx:HS_RNPS1 Genevestigator:Q15287 GermOnline:ENSG00000205937
Uniprot:Q15287
Length = 305
Score = 114 (45.2 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 103 EDDLQNVFGEYGEIRNLHLNLDRRTGFV-KGYALIEYENFEEAQNAITAMNGGELLTQTL 161
+D + +F YG+I+ + + ++R + KGYA +E+EN +EA+ A+ M+GG++ Q +
Sbjct: 174 KDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
Query: 162 TVDWAFSNGPSTGP 175
T + P P
Sbjct: 234 TATAVLAPWPRPPP 247
Score = 47 (21.6 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 16/61 (26%), Positives = 24/61 (39%)
Query: 27 ASSSPRAPQPKLKSAITGGAPKKT-KGRGFREEADSERH-SRLADRNFESLGTDGGPGPQ 84
ASS + + + S + G+ T G + S R S R+ S + G P P
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
Query: 85 R 85
R
Sbjct: 128 R 128
>MGI|MGI:97960 [details] [associations]
symbol:Rnps1 "ribonucleic acid binding protein S1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=ISO] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:97960 GO:GO:0005737
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00700000104336 CTD:10921 eggNOG:NOG331533
HOGENOM:HOG000044325 KO:K14325 OMA:TKRKDRT OrthoDB:EOG44J2KM
HOVERGEN:HBG053138 ChiTaRS:RNPS1 EMBL:AK146443 EMBL:AK151150
EMBL:AK165905 EMBL:BC002061 EMBL:BC008089 IPI:IPI00462424
IPI:IPI00656166 RefSeq:NP_001073596.1 RefSeq:NP_001073597.1
RefSeq:NP_033096.2 UniGene:Mm.1951 ProteinModelPortal:Q99M28
SMR:Q99M28 STRING:Q99M28 PhosphoSite:Q99M28 PaxDb:Q99M28
PRIDE:Q99M28 Ensembl:ENSMUST00000088512 Ensembl:ENSMUST00000115371
Ensembl:ENSMUST00000163717 GeneID:19826 KEGG:mmu:19826
UCSC:uc008avs.1 UCSC:uc008avu.1 NextBio:297301 Bgee:Q99M28
CleanEx:MM_RNPS1 Genevestigator:Q99M28
GermOnline:ENSMUSG00000034681 Uniprot:Q99M28
Length = 305
Score = 114 (45.2 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 103 EDDLQNVFGEYGEIRNLHLNLDRRTGFV-KGYALIEYENFEEAQNAITAMNGGELLTQTL 161
+D + +F YG+I+ + + ++R + KGYA +E+EN +EA+ A+ M+GG++ Q +
Sbjct: 174 KDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
Query: 162 TVDWAFSNGPSTGP 175
T + P P
Sbjct: 234 TATAVLAPWPRPPP 247
Score = 47 (21.6 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 16/61 (26%), Positives = 24/61 (39%)
Query: 27 ASSSPRAPQPKLKSAITGGAPKKT-KGRGFREEADSERH-SRLADRNFESLGTDGGPGPQ 84
ASS + + + S + G+ T G + S R S R+ S + G P P
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
Query: 85 R 85
R
Sbjct: 128 R 128
>RGD|1307522 [details] [associations]
symbol:Rnps1 "ribonucleic acid binding protein S1" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307522
GO:GO:0005737 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00700000104336 CTD:10921 eggNOG:NOG331533
HOGENOM:HOG000044325 KO:K14325 OrthoDB:EOG44J2KM HOVERGEN:HBG053138
EMBL:BC079014 IPI:IPI00464732 RefSeq:NP_001011890.1 UniGene:Rn.7235
ProteinModelPortal:Q6AYK1 STRING:Q6AYK1 Ensembl:ENSRNOT00000010915
GeneID:287113 KEGG:rno:287113 UCSC:RGD:1307522 NextBio:625524
ArrayExpress:Q6AYK1 Genevestigator:Q6AYK1
GermOnline:ENSRNOG00000008703 Uniprot:Q6AYK1
Length = 305
Score = 114 (45.2 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 103 EDDLQNVFGEYGEIRNLHLNLDRRTGFV-KGYALIEYENFEEAQNAITAMNGGELLTQTL 161
+D + +F YG+I+ + + ++R + KGYA +E+EN +EA+ A+ M+GG++ Q +
Sbjct: 174 KDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
Query: 162 TVDWAFSNGPSTGP 175
T + P P
Sbjct: 234 TATAVLAPWPRPPP 247
Score = 47 (21.6 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 16/61 (26%), Positives = 24/61 (39%)
Query: 27 ASSSPRAPQPKLKSAITGGAPKKT-KGRGFREEADSERH-SRLADRNFESLGTDGGPGPQ 84
ASS + + + S + G+ T G + S R S R+ S + G P P
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
Query: 85 R 85
R
Sbjct: 128 R 128
>UNIPROTKB|Q6AYK1 [details] [associations]
symbol:Rnps1 "RNA-binding protein with serine-rich domain
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307522
GO:GO:0005737 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00700000104336 CTD:10921 eggNOG:NOG331533
HOGENOM:HOG000044325 KO:K14325 OrthoDB:EOG44J2KM HOVERGEN:HBG053138
EMBL:BC079014 IPI:IPI00464732 RefSeq:NP_001011890.1 UniGene:Rn.7235
ProteinModelPortal:Q6AYK1 STRING:Q6AYK1 Ensembl:ENSRNOT00000010915
GeneID:287113 KEGG:rno:287113 UCSC:RGD:1307522 NextBio:625524
ArrayExpress:Q6AYK1 Genevestigator:Q6AYK1
GermOnline:ENSRNOG00000008703 Uniprot:Q6AYK1
Length = 305
Score = 114 (45.2 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 103 EDDLQNVFGEYGEIRNLHLNLDRRTGFV-KGYALIEYENFEEAQNAITAMNGGELLTQTL 161
+D + +F YG+I+ + + ++R + KGYA +E+EN +EA+ A+ M+GG++ Q +
Sbjct: 174 KDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
Query: 162 TVDWAFSNGPSTGP 175
T + P P
Sbjct: 234 TATAVLAPWPRPPP 247
Score = 47 (21.6 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 16/61 (26%), Positives = 24/61 (39%)
Query: 27 ASSSPRAPQPKLKSAITGGAPKKT-KGRGFREEADSERH-SRLADRNFESLGTDGGPGPQ 84
ASS + + + S + G+ T G + S R S R+ S + G P P
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
Query: 85 R 85
R
Sbjct: 128 R 128
>UNIPROTKB|I3LBN9 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
GeneTree:ENSGT00700000104309 OMA:YDDREYY Ensembl:ENSSSCT00000025696
Uniprot:I3LBN9
Length = 280
Score = 127 (49.8 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 35/125 (28%), Positives = 63/125 (50%)
Query: 49 KTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQN 108
++ R +R S HS ++ R +G P P + G V G+ E DL+
Sbjct: 76 RSYSRDYRRR-HSHSHSPMSTRR-RHVGNRANPDPNCCL-G----VFGLSLYTTESDLRE 128
Query: 109 VFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168
VF +YG I ++ + D+++ +G+A + +EN ++A+ A NG EL + + VD++ +
Sbjct: 129 VFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT 188
Query: 169 NGPST 173
P T
Sbjct: 189 KRPHT 193
>UNIPROTKB|G1K177 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
Uniprot:G1K177
Length = 644
Score = 133 (51.9 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 81 PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN 140
P RS+ + V + EA E+ L+++F E G + + L DR TG KGY EY++
Sbjct: 9 PAVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 141 FEEAQNAITAMNGGELLTQTLTVDWAFS 168
E A +A+ +NG E + L VD A S
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAAS 94
>FB|FBgn0260456 [details] [associations]
symbol:CG4806 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE013599 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:Q9V535
GeneTree:ENSGT00550000074976 KO:K14573 OMA:MHALECL ChiTaRS:CG33228
FlyBase:FBgn0260456 EMBL:BT023833 RefSeq:NP_611955.2
UniGene:Dm.2200 SMR:Q9W124 STRING:Q9W124 EnsemblMetazoa:FBtr0072332
GeneID:37948 KEGG:dme:Dmel_CG4806 UCSC:CG4806-RA InParanoid:Q9W124
GenomeRNAi:37948 NextBio:806205 Uniprot:Q9W124
Length = 657
Score = 133 (51.9 bits), Expect = 8.5e-08, P = 8.5e-08
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + ++ ED L+ FG++G + ++H+ L R G + G A ++YE +A AI
Sbjct: 50 LIVRNISYKSTEDSLREHFGQWGTLEDVHI-LKRGDGKLVGCAFVQYETINQATKAILNS 108
Query: 152 NGGELLTQTLTVDWA 166
NG ELL + + VDWA
Sbjct: 109 NGKELLGRKVFVDWA 123
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 24/76 (31%), Positives = 46/76 (60%)
Query: 91 IILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITA 150
I+ V G+ E E L ++F +G+IRN+ + L+ T +G+A +EY ++A++A+
Sbjct: 9 ILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHALYN 68
Query: 151 MNGGELLTQTLTVDWA 166
MN EL + + V+++
Sbjct: 69 MNNFELNGKRIHVNYS 84
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 24/76 (31%), Positives = 46/76 (60%)
Query: 91 IILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITA 150
I+ V G+ E E L ++F +G+IRN+ + L+ T +G+A +EY ++A++A+
Sbjct: 9 ILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHALYN 68
Query: 151 MNGGELLTQTLTVDWA 166
MN EL + + V+++
Sbjct: 69 MNNFELNGKRIHVNYS 84
>TAIR|locus:2080772 [details] [associations]
symbol:EIF3G1 "eukaryotic translation initiation factor
3G1" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS;TAS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006413 "translational
initiation" evidence=TAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005852 "eukaryotic translation initiation factor
3 complex" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0009853 "photorespiration" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
[GO:0080129 "proteasome core complex assembly" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00343 SMART:SM00360 GO:GO:0005886 EMBL:CP002686
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003743
GO:GO:0005852 KO:K03248 OMA:SNLSEAM InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 IPI:IPI00938678
RefSeq:NP_001154607.1 UniGene:At.25153 ProteinModelPortal:F4J6A1
SMR:F4J6A1 PRIDE:F4J6A1 EnsemblPlants:AT3G11400.2 GeneID:820313
KEGG:ath:AT3G11400 Uniprot:F4J6A1
Length = 321
Score = 128 (50.1 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 23/75 (30%), Positives = 44/75 (58%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ VT + E+ +E DL +F +G + +++ +D++TG +G+ + + + E+AQ AI +
Sbjct: 242 VRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKL 301
Query: 152 NGGELLTQTLTVDWA 166
NG L V+WA
Sbjct: 302 NGYGYDNLILRVEWA 316
>ZFIN|ZDB-GENE-031118-2 [details] [associations]
symbol:cstf2 "cleavage stimulation factor, 3'
pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
Uniprot:Q6P0U7
Length = 488
Score = 131 (51.2 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 81 PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN 140
P RS+ + V + EA E+ L+++F E G + + L DR TG KGY EY++
Sbjct: 17 PAVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQD 74
Query: 141 FEEAQNAITAMNGGELLTQTLTVDWAFS 168
E A +A+ +NG E + L VD A S
Sbjct: 75 QETALSAMRNLNGREFSGRALRVDNAAS 102
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 128 (50.1 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 33/120 (27%), Positives = 55/120 (45%)
Query: 46 APKKTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDD 105
+P + G +A R S + + + PG S GW I + + ++A E
Sbjct: 202 SPARRFGGPVHHQAQRFRFSPMGVDHMSGISGVNVPGNASS--GWCIFIYNLGQDADEGI 259
Query: 106 LQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165
L +FG +G + N+ + D T KG+ + N+EEA AI ++NG L + L V +
Sbjct: 260 LWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSF 319
Score = 110 (43.8 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 24/90 (26%), Positives = 49/90 (54%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + + +++L+++F GE+ + L D+ G GY + Y ++A+ AI+ +
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
NG L ++T+ V +A PS+ K N+
Sbjct: 82 NGLRLQSKTIKVSYA---RPSSEVIKDANL 108
Score = 109 (43.4 bits), Expect = 0.00014, P = 0.00014
Identities = 26/92 (28%), Positives = 50/92 (54%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ ++G+ + D++++F +G I N + +D+ TG +G A I ++ EA+ AIT+
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 152 NGGEL--LTQTLTVDWAFSNGPSTGPFKRKNM 181
NG + ++ +TV +A P + KNM
Sbjct: 168 NGHKPPGSSEPITVKFA------ANPNQNKNM 193
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 128 (50.1 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 33/120 (27%), Positives = 55/120 (45%)
Query: 46 APKKTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDD 105
+P + G +A R S + + + PG S GW I + + ++A E
Sbjct: 202 SPARRFGGPVHHQAQRFRFSPMGVDHMSGISGVNVPGNASS--GWCIFIYNLGQDADEGI 259
Query: 106 LQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165
L +FG +G + N+ + D T KG+ + N+EEA AI ++NG L + L V +
Sbjct: 260 LWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSF 319
Score = 110 (43.8 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 24/90 (26%), Positives = 49/90 (54%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + + +++L+++F GE+ + L D+ G GY + Y ++A+ AI+ +
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
NG L ++T+ V +A PS+ K N+
Sbjct: 82 NGLRLQSKTIKVSYA---RPSSEVIKDANL 108
Score = 109 (43.4 bits), Expect = 0.00014, P = 0.00014
Identities = 26/92 (28%), Positives = 50/92 (54%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ ++G+ + D++++F +G I N + +D+ TG +G A I ++ EA+ AIT+
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 152 NGGEL--LTQTLTVDWAFSNGPSTGPFKRKNM 181
NG + ++ +TV +A P + KNM
Sbjct: 168 NGHKPPGSSEPITVKFA------ANPNQNKNM 193
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/90 (30%), Positives = 51/90 (56%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + + +++L+++FG GEI + L D+ TG GY + Y + ++A+ AI +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
NG L T+T+ V +A PS+ + N+
Sbjct: 101 NGLRLQTKTIKVSYA---RPSSASIRDANL 127
>WB|WBGene00004388 [details] [associations]
symbol:rnp-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040011
"locomotion" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0007281 GO:GO:0040020 EMBL:FO080195
GeneTree:ENSGT00700000104336 eggNOG:NOG331533 KO:K14325
RefSeq:NP_497276.2 ProteinModelPortal:Q21155 SMR:Q21155
IntAct:Q21155 STRING:Q21155 PaxDb:Q21155 EnsemblMetazoa:K02F3.11.1
EnsemblMetazoa:K02F3.11.2 GeneID:175244 KEGG:cel:CELE_K02F3.11
UCSC:K02F3.11.1 CTD:175244 WormBase:K02F3.11 HOGENOM:HOG000015855
InParanoid:Q21155 OMA:MIDMPVN NextBio:887378 Uniprot:Q21155
Length = 289
Score = 126 (49.4 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 30/120 (25%), Positives = 57/120 (47%)
Query: 62 ERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHL 121
+R R R P + + +++ + + L+ +F YG I+N+ L
Sbjct: 105 DRRDRSGSRQRRRASPRRSPAARSASPAKRVVIKNLSRNVLKTHLEEIFSIYGAIKNVDL 164
Query: 122 NLDRRTGFV-KGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKN 180
DR V +GY +EY+N E+A+ +I M+GG++ + V+ G + PF+R++
Sbjct: 165 PPDRFHNHVHRGYGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVEMTI--GRQSVPFQRRS 222
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 127 (49.8 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 33/118 (27%), Positives = 55/118 (46%)
Query: 46 APKKTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDD 105
+P + G +A R S + + S+ G + GW I + + ++A E
Sbjct: 202 SPARRFGGPVHHQAQRFRFSPMGVDHMSSIS--GVNVASSASSGWCIFIYNLGQDADEGI 259
Query: 106 LQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163
L +FG +G + N+ + D T KG+ + N+EEA AI ++NG L +TL V
Sbjct: 260 LWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQV 317
Score = 114 (45.2 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 26/90 (28%), Positives = 48/90 (53%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + + +D+L+++F GE+ + L D+ G GY + Y N ++A+ AI +
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTL 81
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
NG L ++T+ V A PS+ K N+
Sbjct: 82 NGLRLQSKTIKVSVA---RPSSESIKDANL 108
>TAIR|locus:2173338 [details] [associations]
symbol:SC35 "ortholog of human splicing factor SC35"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016020
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AB008268 HSSP:P19339 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276233 KO:K12891 OMA:DHRRRTR EMBL:AY063890
EMBL:AY122917 EMBL:AY127004 EMBL:AY143851 IPI:IPI00549029
RefSeq:NP_201225.1 RefSeq:NP_851261.1 UniGene:At.23698
UniGene:At.49215 ProteinModelPortal:Q9FMG4 SMR:Q9FMG4 STRING:Q9FMG4
PaxDb:Q9FMG4 PRIDE:Q9FMG4 EnsemblPlants:AT5G64200.1
EnsemblPlants:AT5G64200.2 GeneID:836541 KEGG:ath:AT5G64200
TAIR:At5g64200 InParanoid:Q9FMG4 ProtClustDB:CLSN2914827
ArrayExpress:Q9FMG4 Genevestigator:Q9FMG4 Uniprot:Q9FMG4
Length = 303
Score = 126 (49.4 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 28/94 (29%), Positives = 52/94 (55%)
Query: 79 GGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEY 138
G GP + + +LV + DDL +F +YG++ ++ + DRRTG +G+A + Y
Sbjct: 5 GRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRY 64
Query: 139 ENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPS 172
+ +EA A+ ++G + + +TV +A GP+
Sbjct: 65 KYKDEAHKAVERLDGRVVDGREITVQFA-KYGPN 97
>UNIPROTKB|E1BLD4 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074976
EMBL:DAAA02011496 IPI:IPI00697406 ProteinModelPortal:E1BLD4
Ensembl:ENSBTAT00000022610 OMA:KSMNMKE Uniprot:E1BLD4
Length = 756
Score = 132 (51.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 26/76 (34%), Positives = 48/76 (63%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRT-GFVKGYALIEYENFEEAQNAITA 150
+++ + + EDDL+ VF ++G I L +N+ R+ G ++G+A ++++N EA A+
Sbjct: 116 LIIRNLSFKCSEDDLKTVFSQFGTI--LEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKG 173
Query: 151 MNGGELLTQTLTVDWA 166
MN E+ +T+ VDWA
Sbjct: 174 MNMKEIKGRTVAVDWA 189
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V G+ + E L+ VF +YG+I + + DR T +G+ + +EN ++A++A+ AM
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 152 NGGELLTQTLTVDWA 166
NG + + + VD A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V G+ + E L+ VF +YG+I + + DR T +G+ + +EN ++A++A+ AM
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 152 NGGELLTQTLTVDWA 166
NG + + + VD A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V G+ + E L+ VF +YG+I + + DR T +G+ + +EN ++A++A+ AM
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 152 NGGELLTQTLTVDWA 166
NG + + + VD A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V G+ + E L+ VF +YG+I + + DR T +G+ + +EN ++A++A+ AM
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 152 NGGELLTQTLTVDWA 166
NG + + + VD A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V G+ + E L+ VF +YG+I + + DR T +G+ + +EN ++A++A+ AM
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 152 NGGELLTQTLTVDWA 166
NG + + + VD A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V G+ + E L+ VF +YG+I + + DR T +G+ + +EN ++A++A+ AM
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 152 NGGELLTQTLTVDWA 166
NG + + + VD A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V G+ + E L+ VF +YG+I + + DR T +G+ + +EN ++A++A+ AM
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 152 NGGELLTQTLTVDWA 166
NG + + + VD A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V G+ + E L+ VF +YG+I + + DR T +G+ + +EN ++A++A+ AM
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 152 NGGELLTQTLTVDWA 166
NG + + + VD A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 24/75 (32%), Positives = 46/75 (61%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V G++ E E+ L+ VF +YG++ + + DR + +G+ + +EN E+A++A+ AM
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 152 NGGELLTQTLTVDWA 166
NG + + + VD A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V G+ + E L+ VF +YG+I + + DR T +G+ + +EN ++A++A+ AM
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 152 NGGELLTQTLTVDWA 166
NG + + + VD A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|Q3ZBT6 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9913 "Bos taurus" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P62995 KO:K12897
OrthoDB:EOG4BVRW2 EMBL:BC103113 IPI:IPI00717759
RefSeq:NP_001029948.1 UniGene:Bt.49333 ProteinModelPortal:Q3ZBT6
SMR:Q3ZBT6 STRING:Q3ZBT6 PRIDE:Q3ZBT6 Ensembl:ENSBTAT00000002225
GeneID:615156 KEGG:bta:615156 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 InParanoid:Q3ZBT6 OMA:YDDREYY NextBio:20899475
Uniprot:Q3ZBT6
Length = 288
Score = 125 (49.1 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 35/125 (28%), Positives = 63/125 (50%)
Query: 49 KTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQN 108
++ R +R S HS ++ R +G P P + G V G+ E DL+
Sbjct: 84 RSYSRDYRRR-HSHSHSPMSTRR-RHVGNRANPDPNCCL-G----VFGLSLYTTERDLRE 136
Query: 109 VFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168
VF +YG I ++ + D+++ +G+A + +EN ++A+ A NG EL + + VD++ +
Sbjct: 137 VFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT 196
Query: 169 NGPST 173
P T
Sbjct: 197 KRPHT 201
>UNIPROTKB|E2RD37 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:YDDREYY EMBL:AAEX03017294
ProteinModelPortal:E2RD37 PRIDE:E2RD37 Ensembl:ENSCAFT00000021194
NextBio:20853966 Uniprot:E2RD37
Length = 288
Score = 125 (49.1 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 35/125 (28%), Positives = 63/125 (50%)
Query: 49 KTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQN 108
++ R +R S HS ++ R +G P P + G V G+ E DL+
Sbjct: 84 RSYSRDYRRR-HSHSHSPMSTRR-RHVGNRANPDPNCCL-G----VFGLSLYTTERDLRE 136
Query: 109 VFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168
VF +YG I ++ + D+++ +G+A + +EN ++A+ A NG EL + + VD++ +
Sbjct: 137 VFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT 196
Query: 169 NGPST 173
P T
Sbjct: 197 KRPHT 201
>UNIPROTKB|P62995 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=TAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
EMBL:CH471052 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:U61267 EMBL:U87836 EMBL:AF057159 EMBL:U68063
EMBL:AK301118 EMBL:BC000160 EMBL:BC000451 EMBL:BC005898
IPI:IPI00220938 IPI:IPI00301503 IPI:IPI00472633
RefSeq:NP_001230808.1 RefSeq:NP_004584.1 UniGene:Hs.533122 PDB:2CQC
PDB:2KXN PDB:2RRA PDB:2RRB PDBsum:2CQC PDBsum:2KXN PDBsum:2RRA
PDBsum:2RRB ProteinModelPortal:P62995 SMR:P62995 DIP:DIP-42278N
IntAct:P62995 MINT:MINT-5004415 STRING:P62995 PhosphoSite:P62995
DMDM:51703330 PaxDb:P62995 PRIDE:P62995 DNASU:6434
Ensembl:ENST00000342294 Ensembl:ENST00000382191
Ensembl:ENST00000453386 Ensembl:ENST00000456380 GeneID:6434
KEGG:hsa:6434 UCSC:uc003fpv.3 GeneCards:GC03M185632
H-InvDB:HIX0003928 HGNC:HGNC:10781 HPA:CAB011692 MIM:602719
neXtProt:NX_P62995 PharmGKB:PA35697 InParanoid:P62995
PhylomeDB:P62995 ChiTaRS:TRA2B EvolutionaryTrace:P62995
GenomeRNAi:6434 NextBio:24991 Bgee:P62995 CleanEx:HS_SFRS10
Genevestigator:P62995 GermOnline:ENSG00000136527 Uniprot:P62995
Length = 288
Score = 125 (49.1 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 35/125 (28%), Positives = 63/125 (50%)
Query: 49 KTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQN 108
++ R +R S HS ++ R +G P P + G V G+ E DL+
Sbjct: 84 RSYSRDYRRR-HSHSHSPMSTRR-RHVGNRANPDPNCCL-G----VFGLSLYTTERDLRE 136
Query: 109 VFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168
VF +YG I ++ + D+++ +G+A + +EN ++A+ A NG EL + + VD++ +
Sbjct: 137 VFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT 196
Query: 169 NGPST 173
P T
Sbjct: 197 KRPHT 201
>MGI|MGI:106016 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:106016 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:X80232 EMBL:AK049573 EMBL:AK077418 EMBL:AK080378
EMBL:BC061177 IPI:IPI00139259 IPI:IPI00457594 PIR:S68798
RefSeq:NP_033212.1 UniGene:Mm.210352 UniGene:Mm.389440
UniGene:Mm.442193 ProteinModelPortal:P62996 SMR:P62996
STRING:P62996 PhosphoSite:P62996 PaxDb:P62996 PRIDE:P62996
Ensembl:ENSMUST00000161286 Ensembl:ENSMUST00000162413 GeneID:20462
KEGG:mmu:20462 UCSC:uc007ysc.1 InParanoid:P62996 NextBio:298551
Bgee:P62996 Genevestigator:P62996 GermOnline:ENSMUSG00000022858
Uniprot:P62996
Length = 288
Score = 125 (49.1 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 35/125 (28%), Positives = 63/125 (50%)
Query: 49 KTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQN 108
++ R +R S HS ++ R +G P P + G V G+ E DL+
Sbjct: 84 RSYSRDYRRR-HSHSHSPMSTRR-RHVGNRANPDPNCCL-G----VFGLSLYTTERDLRE 136
Query: 109 VFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168
VF +YG I ++ + D+++ +G+A + +EN ++A+ A NG EL + + VD++ +
Sbjct: 137 VFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT 196
Query: 169 NGPST 173
P T
Sbjct: 197 KRPHT 201
>RGD|619886 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000302 "response to reactive oxygen species"
evidence=IEP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO;ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO;ISS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISO;ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000302 GO:GO:0000398 GO:GO:0048026
GO:GO:0000381 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
KO:K12897 OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 EMBL:D49708 EMBL:BC070948 IPI:IPI00202484
RefSeq:NP_476460.1 UniGene:Rn.8538 ProteinModelPortal:P62997
SMR:P62997 IntAct:P62997 STRING:P62997 PhosphoSite:P62997
PRIDE:P62997 Ensembl:ENSRNOT00000002429 GeneID:117259
KEGG:rno:117259 UCSC:RGD:619886 InParanoid:P62997 NextBio:620130
Genevestigator:P62997 GermOnline:ENSRNOG00000001783 Uniprot:P62997
Length = 288
Score = 125 (49.1 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 35/125 (28%), Positives = 63/125 (50%)
Query: 49 KTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQN 108
++ R +R S HS ++ R +G P P + G V G+ E DL+
Sbjct: 84 RSYSRDYRRR-HSHSHSPMSTRR-RHVGNRANPDPNCCL-G----VFGLSLYTTERDLRE 136
Query: 109 VFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168
VF +YG I ++ + D+++ +G+A + +EN ++A+ A NG EL + + VD++ +
Sbjct: 137 VFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT 196
Query: 169 NGPST 173
P T
Sbjct: 197 KRPHT 201
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 120 (47.3 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V G+ + E L+ VF +YG+I + + DR T +G+ + +EN ++A++A+ AM
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 152 NGGELLTQTLTVDWA 166
NG + + + VD A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 126 (49.4 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 29/93 (31%), Positives = 46/93 (49%)
Query: 76 GTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYAL 135
G G P S GW I + + ++A E L +FG +G + N+ + D T KG+
Sbjct: 244 GMSGVNVPGNSSSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGF 303
Query: 136 IEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168
+ ++EEA AI ++NG L + L V + S
Sbjct: 304 VTMTHYEEAAMAIASLNGYRLGDKILQVSFKTS 336
Score = 119 (46.9 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 26/90 (28%), Positives = 49/90 (54%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + + +D+L+++F GE+ + L D+ G GY + Y N +A+ AI+ +
Sbjct: 36 LIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAISTL 95
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
NG L ++T+ V +A PS+ K N+
Sbjct: 96 NGLRLQSKTIKVSYA---RPSSDSIKDANL 122
Score = 110 (43.8 bits), Expect = 0.00010, P = 0.00010
Identities = 25/85 (29%), Positives = 49/85 (57%)
Query: 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQ 145
SI+ + ++G+ + + D++ +FG YG I N + +D+ +G +G A I ++ EA+
Sbjct: 116 SIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAE 175
Query: 146 NAITAMNGGEL--LTQTLTVDWAFS 168
+AI +NG + + +TV +A S
Sbjct: 176 DAIKDLNGQKPPGAAEQMTVKFAAS 200
>UNIPROTKB|K7EP16 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 Gene3D:3.30.70.330
EMBL:AC020931 PANTHER:PTHR10352 HGNC:HGNC:3274
Ensembl:ENST00000593054 Uniprot:K7EP16
Length = 118
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 99 EEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLT 158
E+ +E DLQ +F +G I ++L D+ TG KG+A I + E+A AI ++G
Sbjct: 46 EDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH 105
Query: 159 QTLTVDWAFSNGPST 173
L V+WA PST
Sbjct: 106 LILNVEWA---KPST 117
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 126 (49.4 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 34/98 (34%), Positives = 49/98 (50%)
Query: 73 ESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKG 132
E G G P RS + V G+ EE E+ L+ F G IR + DR TG KG
Sbjct: 210 ELQGPRGSPNA-RSQPSKTLFVKGLSEETTEETLKESFD--GSIR-ARIVTDRETGSSKG 265
Query: 133 YALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNG 170
+ +++ + E+A+ A AM GE+ +T+DWA G
Sbjct: 266 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 303
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 126 (49.4 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 28/83 (33%), Positives = 44/83 (53%)
Query: 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQ 145
S GW I V + ++A E L +FG +G + N+ + D T KG+ + N+EEA
Sbjct: 282 SSSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAA 341
Query: 146 NAITAMNGGELLTQTLTVDWAFS 168
AI+++NG L + L V + S
Sbjct: 342 MAISSLNGYRLGDKVLQVSFKSS 364
>UNIPROTKB|H3BV80 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC009065 HGNC:HGNC:10080 ChiTaRS:RNPS1
ProteinModelPortal:H3BV80 SMR:H3BV80 Ensembl:ENST00000569598
Bgee:H3BV80 Uniprot:H3BV80
Length = 211
Score = 114 (45.2 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 103 EDDLQNVFGEYGEIRNLHLNLDRRTGFV-KGYALIEYENFEEAQNAITAMNGGELLTQTL 161
+D + +F YG+I+ + + ++R + KGYA +E+EN +EA+ A+ M+GG++ Q +
Sbjct: 80 KDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 139
Query: 162 TVDWAFSNGPSTGP 175
T + P P
Sbjct: 140 TATAVLAPWPRPPP 153
Score = 35 (17.4 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 69 DRNFESLGTDGGPGPQR 85
++N S + G P P R
Sbjct: 18 NKNSSSSSSSGSPSPSR 34
>GENEDB_PFALCIPARUM|MAL8P1.83 [details] [associations]
symbol:MAL8P1.83 "eukaryotictranslation
initiation factor, putative" species:5833 "Plasmodium falciparum"
[GO:0006412 "translation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003743 HSSP:P19339
KO:K03248 PANTHER:PTHR10352 HOGENOM:HOG000239560 EMBL:AL844507
RefSeq:XP_001349368.1 ProteinModelPortal:Q8IAZ3 IntAct:Q8IAZ3
MINT:MINT-1709542 EnsemblProtists:MAL8P1.83:mRNA GeneID:2655434
KEGG:pfa:MAL8P1.83 EuPathDB:PlasmoDB:PF3D7_0815600 OMA:WAKPSNR
ProtClustDB:CLSZ2435783 Uniprot:Q8IAZ3
Length = 266
Score = 123 (48.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ VT + E+ E++L N+FG+ G I + L + T KG+A I Y EEA+ AI +
Sbjct: 187 VRVTNLSEDVNENELSNLFGKVGNIVRMFLAKHKETQNSKGFAFITYSKREEAKRAIEKL 246
Query: 152 NGGELLTQTLTVDWA 166
N L+V+WA
Sbjct: 247 NRHGFENLLLSVEWA 261
>UNIPROTKB|Q8IAZ3 [details] [associations]
symbol:MAL8P1.83 "Eukaryotic translation initiation factor
3 subunit G" species:36329 "Plasmodium falciparum 3D7" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 HSSP:P19339 KO:K03248 PANTHER:PTHR10352
HOGENOM:HOG000239560 EMBL:AL844507 RefSeq:XP_001349368.1
ProteinModelPortal:Q8IAZ3 IntAct:Q8IAZ3 MINT:MINT-1709542
EnsemblProtists:MAL8P1.83:mRNA GeneID:2655434 KEGG:pfa:MAL8P1.83
EuPathDB:PlasmoDB:PF3D7_0815600 OMA:WAKPSNR ProtClustDB:CLSZ2435783
Uniprot:Q8IAZ3
Length = 266
Score = 123 (48.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ VT + E+ E++L N+FG+ G I + L + T KG+A I Y EEA+ AI +
Sbjct: 187 VRVTNLSEDVNENELSNLFGKVGNIVRMFLAKHKETQNSKGFAFITYSKREEAKRAIEKL 246
Query: 152 NGGELLTQTLTVDWA 166
N L+V+WA
Sbjct: 247 NRHGFENLLLSVEWA 261
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 120 (47.3 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V G+ + E L+ VF +YG+I + + DR T +G+ + +EN ++A++A+ AM
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 152 NGGELLTQTLTVDWA 166
NG + + + VD A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 23/73 (31%), Positives = 43/73 (58%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V G+ + E L+ VF +YG+I + + DR T +G+ + +EN ++A++A+ AM
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 152 NGGELLTQTLTVD 164
NG + + + VD
Sbjct: 68 NGKSVDGRQIRVD 80
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V G+ + E L+ VF +YG+I + + DR T +G+ + +EN ++A++A+ AM
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 152 NGGELLTQTLTVDWA 166
NG + + + VD A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V G+ + E L+ VF +YG+I + + DR T +G+ + +EN ++A++A+ AM
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 152 NGGELLTQTLTVDWA 166
NG + + + VD A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V G+ + E L+ VF +YG+I + + DR T +G+ + +EN ++A++A+ AM
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 152 NGGELLTQTLTVDWA 166
NG + + + VD A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 100 EAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQ 159
+ E++L N F G+I N+ + DR TG +G+A IE+ AQ A+ MNG E +
Sbjct: 15 QTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGR 74
Query: 160 TLTVDWA 166
L V+ A
Sbjct: 75 PLRVNLA 81
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQN 146
+ G+ + V + EDDL N F + G + N+ + DR TG +G+A +E+ AQ
Sbjct: 1 MSGFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQR 60
Query: 147 AITAMNGGELLTQTLTVDWA 166
A+ NG + + L V+ A
Sbjct: 61 AVDQFNGVDFNGRALRVNLA 80
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQN 146
+ G+ + V + EDDL N F + G + N+ + DR TG +G+A +E+ AQ
Sbjct: 1 MSGFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQR 60
Query: 147 AITAMNGGELLTQTLTVDWA 166
A+ NG + + L V+ A
Sbjct: 61 AVDQFNGVDFNGRALRVNLA 80
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 122 (48.0 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 32/98 (32%), Positives = 49/98 (50%)
Query: 73 ESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKG 132
E G G P RS + V G+ E+ E+ L+ F G +R + DR TG KG
Sbjct: 181 ELQGPRGSPNA-RSQPSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKG 236
Query: 133 YALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNG 170
+ +++ + E+A+ A AM GE+ +T+DWA G
Sbjct: 237 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 274
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 123 (48.4 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 80 GPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYE 139
G G RS + V + + ED ++++F + G + ++ + DR TG KGY IE+
Sbjct: 10 GVGNDRSQRS--VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFP 67
Query: 140 NFEEAQNAITAMNGGELLTQTLTVDWA 166
+ + A+ AI +NG EL + L VD A
Sbjct: 68 DIQTAEVAIRNLNGYELSGRILRVDSA 94
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 94 VTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNG 153
V G+ + LQN F +YG++ + + DR TG +G+ + + + E + AI AMNG
Sbjct: 10 VGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNG 69
Query: 154 GELLTQTLTVDWAFSNGPSTG 174
+L + +TV+ A S G
Sbjct: 70 QDLDGRNITVNEAQSRRSDGG 90
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V G+ + E L+ VF +YG+I+ + + DR T +G+ + +EN E+A++A+ M
Sbjct: 8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGM 67
Query: 152 NGGELLTQTLTVDWA 166
NG + + + VD A
Sbjct: 68 NGKTVDGRQIRVDQA 82
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 117 (46.2 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 29/94 (30%), Positives = 49/94 (52%)
Query: 75 LGTDGGPGPQRSIEG--WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKG 132
L TD P S G + V+G+ ED L++ F ++G + ++++ +D+ KG
Sbjct: 60 LSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKG 119
Query: 133 YALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166
+A + YE EEA AI M+G L + + V+ A
Sbjct: 120 FAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEA 153
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 123 (48.4 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 33/107 (30%), Positives = 51/107 (47%)
Query: 62 ERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHL 121
+R S + + SL GP + GW I V + EA E L +FG +G + N+ +
Sbjct: 250 KRFSPITIDSMTSLAGVNLTGPTGA--GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKV 307
Query: 122 NLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168
D T KG+ + N++EA AI ++NG L + L V + S
Sbjct: 308 IRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTS 354
Score = 116 (45.9 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 26/90 (28%), Positives = 49/90 (54%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + + +++ +++FG GEI + L D+ TG GY + Y + +A AI +
Sbjct: 40 LIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTL 99
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
NG +L T+T+ V +A PS+ + N+
Sbjct: 100 NGLKLQTKTIKVSYA---RPSSASIRDANL 126
Score = 107 (42.7 bits), Expect = 0.00032, P = 0.00032
Identities = 25/88 (28%), Positives = 45/88 (51%)
Query: 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRT-GFVKGYALIEYENFEEA 144
SI + V+G+ + + D++ +F +YG I + +D+ T G +G I ++ EA
Sbjct: 120 SIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEA 179
Query: 145 QNAITAMNGGELLTQTLTVDWAFSNGPS 172
+ AI +NG + L + F+N PS
Sbjct: 180 EEAIKGLNGQKPLGAAEPITVKFANNPS 207
>ZFIN|ZDB-GENE-030131-5228 [details] [associations]
symbol:rnps1 "RNA binding protein S1, serine-rich
domain" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-5228 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q9V535 GeneTree:ENSGT00700000104336 CTD:10921
eggNOG:NOG331533 HOGENOM:HOG000044325 KO:K14325 EMBL:BC057251
EMBL:BC065953 IPI:IPI00490683 RefSeq:NP_956055.1 UniGene:Dr.75879
ProteinModelPortal:Q6PG31 STRING:Q6PG31 Ensembl:ENSDART00000128731
GeneID:327020 KEGG:dre:327020 InParanoid:Q6PG31 NextBio:20809844
Bgee:Q6PG31 Uniprot:Q6PG31
Length = 283
Score = 121 (47.7 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 38/137 (27%), Positives = 66/137 (48%)
Query: 27 ASSSPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRS 86
+SSS R+ S+ + G+P ++ R S S+ R E P P+ +
Sbjct: 83 SSSSSRSSS----SSGSSGSPSPSRRRHDNRRR-SRSKSKSQKRTDEKERKRRSPSPKPT 137
Query: 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDR-RTGFVKGYALIEYENFEEAQ 145
+ + + +D +Q +F YG+I+ + + DR KGYA +EYE+ E+AQ
Sbjct: 138 K----LYLGRLTRNVTKDHIQEIFATYGKIKMIDMPSDRLHPNVSKGYAYVEYESPEDAQ 193
Query: 146 NAITAMNGGELLTQTLT 162
A+ M+GG++ Q +T
Sbjct: 194 KALKHMDGGQIDGQEIT 210
>UNIPROTKB|D4A5K7 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28 (Predicted),
isoform CRA_b" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1311336 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473959 EMBL:AC096035 GeneTree:ENSGT00550000074976 KO:K14573
CTD:55131 IPI:IPI00949364 RefSeq:NP_001101320.1 UniGene:Rn.50022
Ensembl:ENSRNOT00000064007 GeneID:312182 KEGG:rno:312182
NextBio:664628 Uniprot:D4A5K7
Length = 700
Score = 127 (49.8 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRT-GFVKGYALIEYENFEEAQNAITA 150
+++ + + EDDL++VF YG + L +N+ R+ G ++G+A I+++N EA A+
Sbjct: 116 LIIRNLSFKCSEDDLKSVFTHYGTV--LEVNIPRKPDGKMRGFAFIQFKNLLEAGKALKG 173
Query: 151 MNGGELLTQTLTVDWA 166
N E+ +T+ VDWA
Sbjct: 174 ANMKEIKGRTVAVDWA 189
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 123 (48.4 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 30/107 (28%), Positives = 56/107 (52%)
Query: 75 LGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYA 134
LGT+G ++ ++V + + +D+ +++FG G+I + L D+ TG GY
Sbjct: 28 LGTNGATDDSKTN----LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 83
Query: 135 LIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
+ Y + +A AI +NG +L T+T+ V +A PS+ + N+
Sbjct: 84 FVNYSDPNDADKAINTLNGLKLQTKTIKVSYA---RPSSASIRDANL 127
Score = 121 (47.7 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAI 148
GW I V + EA E L +FG +G + N+ + D T KG+ + N++EA AI
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 149 TAMNGGELLTQTLTVDWAFS 168
++NG L + L V + S
Sbjct: 343 ASLNGYRLGERVLQVSFKTS 362
Score = 113 (44.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQ 145
SI + V+G+ + + +++ +F +YG I + LD+ TG +G I ++ EA+
Sbjct: 121 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAE 180
Query: 146 NAITAMNGGELLTQTLTVDWAFSNGPS 172
AI +NG + L + F+N PS
Sbjct: 181 EAIKGLNGQKPLGAAEPITVKFANNPS 207
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 123 (48.4 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 30/107 (28%), Positives = 56/107 (52%)
Query: 75 LGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYA 134
LGT+G ++ ++V + + +D+ +++FG G+I + L D+ TG GY
Sbjct: 28 LGTNGATDDSKTN----LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 83
Query: 135 LIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
+ Y + +A AI +NG +L T+T+ V +A PS+ + N+
Sbjct: 84 FVNYSDPNDADKAINTLNGLKLQTKTIKVSYA---RPSSASIRDANL 127
Score = 121 (47.7 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAI 148
GW I V + EA E L +FG +G + N+ + D T KG+ + N++EA AI
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 149 TAMNGGELLTQTLTVDWAFS 168
++NG L + L V + S
Sbjct: 343 ASLNGYRLGERVLQVSFKTS 362
Score = 113 (44.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQ 145
SI + V+G+ + + +++ +F +YG I + LD+ TG +G I ++ EA+
Sbjct: 121 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAE 180
Query: 146 NAITAMNGGELLTQTLTVDWAFSNGPS 172
AI +NG + L + F+N PS
Sbjct: 181 EAIKGLNGQKPLGAAEPITVKFANNPS 207
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 123 (48.4 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 30/107 (28%), Positives = 56/107 (52%)
Query: 75 LGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYA 134
LGT+G ++ ++V + + +D+ +++FG G+I + L D+ TG GY
Sbjct: 28 LGTNGATDDSKTN----LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 83
Query: 135 LIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
+ Y + +A AI +NG +L T+T+ V +A PS+ + N+
Sbjct: 84 FVNYSDPNDADKAINTLNGLKLQTKTIKVSYA---RPSSASIRDANL 127
Score = 121 (47.7 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAI 148
GW I V + EA E L +FG +G + N+ + D T KG+ + N++EA AI
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 149 TAMNGGELLTQTLTVDWAFS 168
++NG L + L V + S
Sbjct: 343 ASLNGYRLGERVLQVSFKTS 362
Score = 108 (43.1 bits), Expect = 0.00024, P = 0.00024
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQ 145
SI + V+G+ + + +++ +F +YG I + +D+ TG +G I ++ EA+
Sbjct: 121 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180
Query: 146 NAITAMNGGELLTQTLTVDWAFSNGPS 172
AI +NG + L + F+N PS
Sbjct: 181 EAIKGLNGQKPLGAAEPITVKFANNPS 207
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 123 (48.4 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 30/107 (28%), Positives = 56/107 (52%)
Query: 75 LGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYA 134
LGT+G ++ ++V + + +D+ +++FG G+I + L D+ TG GY
Sbjct: 28 LGTNGATDDSKTN----LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 83
Query: 135 LIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
+ Y + +A AI +NG +L T+T+ V +A PS+ + N+
Sbjct: 84 FVNYSDPNDADKAINTLNGLKLQTKTIKVSYA---RPSSASIRDANL 127
Score = 121 (47.7 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAI 148
GW I V + EA E L +FG +G + N+ + D T KG+ + N++EA AI
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 149 TAMNGGELLTQTLTVDWAFS 168
++NG L + L V + S
Sbjct: 343 ASLNGYRLGERVLQVSFKTS 362
Score = 108 (43.1 bits), Expect = 0.00024, P = 0.00024
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQ 145
SI + V+G+ + + +++ +F +YG I + +D+ TG +G I ++ EA+
Sbjct: 121 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180
Query: 146 NAITAMNGGELLTQTLTVDWAFSNGPS 172
AI +NG + L + F+N PS
Sbjct: 181 EAIKGLNGQKPLGAAEPITVKFANNPS 207
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 123 (48.4 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 30/107 (28%), Positives = 56/107 (52%)
Query: 75 LGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYA 134
LGT+G ++ ++V + + +D+ +++FG G+I + L D+ TG GY
Sbjct: 28 LGTNGATDDSKTN----LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 83
Query: 135 LIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
+ Y + +A AI +NG +L T+T+ V +A PS+ + N+
Sbjct: 84 FVNYSDPNDADKAINTLNGLKLQTKTIKVSYA---RPSSASIRDANL 127
Score = 121 (47.7 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAI 148
GW I V + EA E L +FG +G + N+ + D T KG+ + N++EA AI
Sbjct: 284 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 343
Query: 149 TAMNGGELLTQTLTVDWAFS 168
++NG L + L V + S
Sbjct: 344 ASLNGYRLGERVLQVSFKTS 363
Score = 108 (43.1 bits), Expect = 0.00025, P = 0.00025
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQ 145
SI + V+G+ + + +++ +F +YG I + +D+ TG +G I ++ EA+
Sbjct: 121 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180
Query: 146 NAITAMNGGELLTQTLTVDWAFSNGPS 172
AI +NG + L + F+N PS
Sbjct: 181 EAIKGLNGQKPLGAAEPITVKFANNPS 207
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 120 (47.3 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V G+ + E L+ VF +YG+I + + DR T +G+ + +EN ++A++A+ AM
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 152 NGGELLTQTLTVDWA 166
NG + + + VD A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 124 (48.7 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V + EA E+ L+ +F E G + +L L DR +G KG+ EY++ E A +A+ +
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 152 NGGELLTQTLTVD 164
NG E+ +TL VD
Sbjct: 78 NGYEIGGRTLRVD 90
>RGD|1311336 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005794 "Golgi apparatus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311336 GO:GO:0005794
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC096035 OrthoDB:EOG4SN1NH IPI:IPI00373266
ProteinModelPortal:D4A618 Ensembl:ENSRNOT00000007777
UCSC:RGD:1311336 ArrayExpress:D4A618 Uniprot:D4A618
Length = 749
Score = 127 (49.8 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRT-GFVKGYALIEYENFEEAQNAITA 150
+++ + + EDDL++VF YG + L +N+ R+ G ++G+A I+++N EA A+
Sbjct: 116 LIIRNLSFKCSEDDLKSVFTHYGTV--LEVNIPRKPDGKMRGFAFIQFKNLLEAGKALKG 173
Query: 151 MNGGELLTQTLTVDWA 166
N E+ +T+ VDWA
Sbjct: 174 ANMKEIKGRTVAVDWA 189
>UNIPROTKB|Q9NW13 [details] [associations]
symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 EMBL:CH471070 EMBL:CH236947 eggNOG:COG0724
EMBL:AC010655 KO:K14573 EMBL:AK001239 EMBL:AK222716 EMBL:AC018635
EMBL:BC013889 IPI:IPI00304187 RefSeq:NP_001159607.1
RefSeq:NP_060547.2 UniGene:Hs.274263 ProteinModelPortal:Q9NW13
SMR:Q9NW13 IntAct:Q9NW13 STRING:Q9NW13 PhosphoSite:Q9NW13
DMDM:55976611 SWISS-2DPAGE:Q9NW13 PaxDb:Q9NW13 PeptideAtlas:Q9NW13
PRIDE:Q9NW13 Ensembl:ENST00000223073 GeneID:55131 KEGG:hsa:55131
UCSC:uc003vmp.2 CTD:55131 GeneCards:GC07M127951 HGNC:HGNC:21863
HPA:HPA019058 HPA:HPA026672 MIM:612074 MIM:612079
neXtProt:NX_Q9NW13 Orphanet:157954 PharmGKB:PA134867266
HOGENOM:HOG000124666 HOVERGEN:HBG073213 InParanoid:Q9NW13
OMA:MRSKPAT OrthoDB:EOG4SN1NH PhylomeDB:Q9NW13 ChiTaRS:RBM28
GenomeRNAi:55131 NextBio:58802 ArrayExpress:Q9NW13 Bgee:Q9NW13
CleanEx:HS_RBM28 Genevestigator:Q9NW13 GermOnline:ENSG00000106344
Uniprot:Q9NW13
Length = 759
Score = 127 (49.8 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 24/76 (31%), Positives = 47/76 (61%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRT-GFVKGYALIEYENFEEAQNAITA 150
+++ + + EDDL+ VF ++G + L +N+ R+ G ++G+ ++++N EA A+
Sbjct: 116 LIIRNLSFKCSEDDLKTVFAQFGAV--LEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKG 173
Query: 151 MNGGELLTQTLTVDWA 166
MN E+ +T+ VDWA
Sbjct: 174 MNMKEIKGRTVAVDWA 189
>DICTYBASE|DDB_G0277353 [details] [associations]
symbol:DDB_G0277353 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0277353 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000019 eggNOG:NOG321849
RefSeq:XP_642758.1 ProteinModelPortal:Q54ZV8
EnsemblProtists:DDB0232331 GeneID:8620947 KEGG:ddi:DDB_G0277353
InParanoid:Q54ZV8 OMA:FNGTHLD Uniprot:Q54ZV8
Length = 633
Score = 126 (49.4 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 37/139 (26%), Positives = 63/139 (45%)
Query: 34 PQPKLKSAITGGAPKKTK--GRGFREEADSERHSRLADRNFESLGTDGGP-----GPQRS 86
P+ +S+ GG + GRG ++ S H + S G P P
Sbjct: 236 PRDSYRSSYRGGYDSRPHHGGRGGYRDSGSYHHPYGGGGSGGSGGRFQRPRREPVDPAEK 295
Query: 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQN 146
+ I V + Q+ L+++FG++G + N+++ D+R G KGYA +E+EN +A
Sbjct: 296 EKSKCIFVGNLPYHFQKQHLEDLFGKFGPLVNINVGFDKRNGQSKGYAFVEFENKPDADA 355
Query: 147 AITAMNGGELLTQTLTVDW 165
A E+ + L +DW
Sbjct: 356 AFNEYLVKEVENRKLRLDW 374
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 122 (48.0 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 37/135 (27%), Positives = 58/135 (42%)
Query: 34 PQPKLKSAITGG---APKKTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGW 90
P K AI +P + ++A R S + SL PG + GW
Sbjct: 206 PSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGT--GW 263
Query: 91 IILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITA 150
I V + +A E L +FG +G + N+ + D T KG+ + N++EA AI +
Sbjct: 264 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 323
Query: 151 MNGGELLTQTLTVDW 165
+NG L + L V +
Sbjct: 324 LNGYRLGDRVLQVSF 338
Score = 121 (47.7 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 27/90 (30%), Positives = 51/90 (56%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + + +++L+++FG GEI + L D+ TG GY + Y + ++A+ AI +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
NG L T+T+ V +A PS+ + N+
Sbjct: 101 NGLRLQTKTIKVSYA---RPSSASIRDANL 127
Score = 108 (43.1 bits), Expect = 0.00022, P = 0.00022
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQ 145
SI + V+G+ + + +L+ +F +YG I + +D+ TG +G I ++ EA+
Sbjct: 121 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180
Query: 146 NAITAMNGGELLTQTLTVDWAFSNGPS 172
AI +NG + T + F+N PS
Sbjct: 181 EAIKGLNGQKPPGATEPITVKFANNPS 207
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNA 147
+G+ + V V + E+++ N F G + N+ + DR TG +G+A +E+ AQ A
Sbjct: 4 QGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRA 63
Query: 148 ITAMNGGELLTQTLTVDWA 166
+ +NG + L V++A
Sbjct: 64 VEQLNGVAFNGRNLRVNYA 82
>UNIPROTKB|G3N117 [details] [associations]
symbol:LOC508834 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 EMBL:DAAA02019492
Ensembl:ENSBTAT00000063470 OMA:QIMATAV Uniprot:G3N117
Length = 272
Score = 115 (45.5 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 34/137 (24%), Positives = 62/137 (45%)
Query: 40 SAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHE 99
S+ + G+P+ + R R + S+ S D E P P + + V +
Sbjct: 88 SSSSPGSPRPWRPRDHRRRSGSKPKSPRPDEK-ERRRRSPAPKPTK------VHVARLTR 140
Query: 100 EAQEDDLQNVFGEYGEIRNLHLNLDR-RTGFVKGYALIEYENFEEAQNAITAMNGGELLT 158
+ + ++ +F +G +R + L DR R +G+A +E+EN EEA A+ M+GG++
Sbjct: 141 KVTREHIREIFSTFGRVRKIDLRRDRMRAHPSQGHAYVEFENPEEAAKALKHMDGGQIDG 200
Query: 159 QTLTVDWAFSNGPSTGP 175
Q + + P P
Sbjct: 201 QQIMATAVLAPWPQPPP 217
Score = 34 (17.0 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 27 ASSSPRAPQP 36
+SSSP +P+P
Sbjct: 88 SSSSPGSPRP 97
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 120 (47.3 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V G+ + E L+ VF +YG+I + + DR T +G+ + +EN ++A++A+ AM
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 152 NGGELLTQTLTVDWA 166
NG + + + VD A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 122 (48.0 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 27/90 (30%), Positives = 51/90 (56%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + + +++L+++FG GEI + L D+ TG GY + Y + ++A+ AI +
Sbjct: 69 LIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTL 128
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
NG L T+T+ V +A PS+ + N+
Sbjct: 129 NGLRLQTKTIKVSYA---RPSSASIRDANL 155
Score = 118 (46.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFE 142
P + GW I V + +A E L +FG +G + N+ + D T KG+ + N++
Sbjct: 298 PGHAGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 357
Query: 143 EAQNAITAMNGGELLTQTLTVDW 165
EA AI ++NG L + L V +
Sbjct: 358 EAAMAIASLNGYRLGDRVLQVSF 380
Score = 110 (43.8 bits), Expect = 0.00013, P = 0.00013
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQ 145
SI + V+G+ + + +L+ +F +YG I + +D+ TG +G I ++ EA+
Sbjct: 149 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAE 208
Query: 146 NAITAMNGGELLTQTLTVDWAFSNGPS 172
AI +NG + T + F+N PS
Sbjct: 209 EAIKGLNGQKPPAATEPITVKFANNPS 235
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 122 (48.0 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 33/106 (31%), Positives = 50/106 (47%)
Query: 63 RHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLN 122
R S +A SL PG + GW I V + +A E L +FG +G + N+ +
Sbjct: 281 RFSPMAIDGMTSLAGINFPGHAGT--GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVI 338
Query: 123 LDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168
D T KG+ + N++EA AI ++NG L + L V + S
Sbjct: 339 RDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTS 384
Score = 112 (44.5 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 27/91 (29%), Positives = 51/91 (56%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRT-GFVKGYALIEYENFEEAQNAITA 150
++V + + +++L+++FG GEI + L D+ T G GY + Y + ++A+ AI
Sbjct: 68 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINT 127
Query: 151 MNGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
+NG L T+T+ V +A PS+ + N+
Sbjct: 128 LNGLRLQTKTIKVSYA---RPSSASIRDANL 155
Score = 107 (42.7 bits), Expect = 0.00037, P = 0.00037
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQ 145
SI + V+G+ + + +L+ +F +YG I + +D+ TG +G I ++ EA+
Sbjct: 149 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 208
Query: 146 NAITAMNGGELLTQTLTVDWAFSNGPS 172
AI +NG + T + F+N PS
Sbjct: 209 EAIKGLNGQKPPGATEPITVKFANNPS 235
>UNIPROTKB|H0YCP8 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC105219 EMBL:AC105049 HGNC:HGNC:17042 Ensembl:ENST00000532884
Uniprot:H0YCP8
Length = 273
Score = 119 (46.9 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 25/65 (38%), Positives = 42/65 (64%)
Query: 99 EEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLT 158
++ +DD+++VF +G+I++ L D TG KGY IEYE + +Q+A+++MN +L
Sbjct: 105 QDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGG 164
Query: 159 QTLTV 163
Q L V
Sbjct: 165 QYLRV 169
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 21/62 (33%), Positives = 38/62 (61%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V G+ + E L+ VF +YG+I + + DR T +G+ + +EN ++A++A+ AM
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 152 NG 153
NG
Sbjct: 68 NG 69
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 21/62 (33%), Positives = 38/62 (61%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V G+ + E L+ VF +YG+I + + DR T +G+ + +EN ++A++A+ AM
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 152 NG 153
NG
Sbjct: 68 NG 69
>TAIR|locus:2075676 [details] [associations]
symbol:AT3G47120 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL133292
EMBL:BT002472 EMBL:BT010369 IPI:IPI00540994 PIR:T45648
RefSeq:NP_190296.1 UniGene:At.35841 HSSP:Q9V535
ProteinModelPortal:Q9SD61 SMR:Q9SD61 IntAct:Q9SD61 PaxDb:Q9SD61
PRIDE:Q9SD61 EnsemblPlants:AT3G47120.1 GeneID:823865
KEGG:ath:AT3G47120 TAIR:At3g47120 eggNOG:COG0724
HOGENOM:HOG000174091 InParanoid:Q9SD61 KO:K13107 OMA:GHEEDRS
PhylomeDB:Q9SD61 ProtClustDB:CLSN2915690 Genevestigator:Q9SD61
Uniprot:Q9SD61
Length = 352
Score = 121 (47.7 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V G+ + E DL VF +YGEI +++L D+ TG KG+A + YE+ A+ +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 152 NGGELLTQTLTVD 164
NG +L +T+ VD
Sbjct: 98 NGALVLGRTIKVD 110
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 115 (45.5 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 24/85 (28%), Positives = 43/85 (50%)
Query: 82 GPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENF 141
G Q S E + V + A ED + VFG G + + L D +G KG+ ++Y +
Sbjct: 376 GDQTSPESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSV 435
Query: 142 EEAQNAITAMNGGELLTQTLTVDWA 166
+EA+ A + G E+ + + +D++
Sbjct: 436 DEARKAYNELQGAEIDGRPIRLDFS 460
Score = 43 (20.2 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 46 APKKTKG--RGFREEADSERHSR--LADRNFESLGTDG 79
AP K KG + +EE+DS+ S +D + ES G+ G
Sbjct: 205 APAKAKGDAKTSKEESDSDSDSSESSSDSDEES-GSSG 241
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 121 (47.7 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 27/90 (30%), Positives = 51/90 (56%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + + +++L+++FG GEI + L D+ TG GY + Y + ++A+ AI +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
NG L T+T+ V +A PS+ + N+
Sbjct: 101 NGLRLQTKTIKVSYA---RPSSASIRDANL 127
Score = 117 (46.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAI 148
GW I V + +A E L +FG +G + N+ + D T KG+ + N++EA AI
Sbjct: 275 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Query: 149 TAMNGGELLTQTLTVDW 165
++NG L + L V +
Sbjct: 335 ASLNGYRLGDRVLQVSF 351
Score = 108 (43.1 bits), Expect = 0.00024, P = 0.00024
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQ 145
SI + V+G+ + + +L+ +F +YG I + +D+ TG +G I ++ EA+
Sbjct: 121 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180
Query: 146 NAITAMNGGELLTQTLTVDWAFSNGPS 172
AI +NG + T + F+N PS
Sbjct: 181 EAIKGLNGQKPPGATEPITVKFANNPS 207
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 121 (47.7 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 27/90 (30%), Positives = 51/90 (56%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + + +++L+++FG GEI + L D+ TG GY + Y + ++A+ AI +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
NG L T+T+ V +A PS+ + N+
Sbjct: 101 NGLRLQTKTIKVSYA---RPSSASIRDANL 127
Score = 117 (46.2 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAI 148
GW I V + +A E L +FG +G + N+ + D T KG+ + N++EA AI
Sbjct: 276 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 335
Query: 149 TAMNGGELLTQTLTVDW 165
++NG L + L V +
Sbjct: 336 ASLNGYRLGDRVLQVSF 352
Score = 108 (43.1 bits), Expect = 0.00024, P = 0.00024
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQ 145
SI + V+G+ + + +L+ +F +YG I + +D+ TG +G I ++ EA+
Sbjct: 121 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180
Query: 146 NAITAMNGGELLTQTLTVDWAFSNGPS 172
AI +NG + T + F+N PS
Sbjct: 181 EAIKGLNGQKPPGATEPITVKFANNPS 207
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 119 (46.9 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I V G+ E L+ F +YGE+ + + +DR TG +G+A + + + EEA NA+ +
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-L 94
Query: 152 NGGELLTQTLTVDWAFSNGPSTG 174
+G +L + + V++A G G
Sbjct: 95 DGQDLHGRRIRVNYATERGSGFG 117
>MGI|MGI:1919414 [details] [associations]
symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1919414 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
EMBL:AL672042 GeneTree:ENSGT00600000084414 CTD:51634
HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:AK076115 EMBL:AK168018
EMBL:BC026976 IPI:IPI00261255 RefSeq:NP_775552.1 UniGene:Mm.32561
ProteinModelPortal:Q8R0F5 SMR:Q8R0F5 STRING:Q8R0F5
PhosphoSite:Q8R0F5 PRIDE:Q8R0F5 Ensembl:ENSMUST00000033433
GeneID:209003 KEGG:mmu:209003 UCSC:uc009tct.1 InParanoid:A2AF74
NextBio:372506 Bgee:Q8R0F5 CleanEx:MM_RBMX2 Genevestigator:Q8R0F5
GermOnline:ENSMUSG00000031107 Uniprot:Q8R0F5
Length = 326
Score = 120 (47.3 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAIT 149
WI V G+ E E D+ VF +YGEI N++L D++TG KG+ + YE+ A+
Sbjct: 37 WIF-VGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVD 95
Query: 150 AMNGGELLTQTLTVD 164
NG ++ +T+ VD
Sbjct: 96 NFNGIKIKGRTIRVD 110
>UNIPROTKB|F1LMQ9 [details] [associations]
symbol:Rbmx2 "RNA-binding motif protein, X-linked 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00600000084414
OMA:HRHKRAR IPI:IPI00361641 Ensembl:ENSRNOT00000048922
Uniprot:F1LMQ9
Length = 327
Score = 120 (47.3 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAIT 149
WI L G+ E E D+ VF +YGEI N++L D++TG KG+ + YE+ A+
Sbjct: 36 WIFL-GGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVD 94
Query: 150 AMNGGELLTQTLTVD 164
NG ++ +T+ VD
Sbjct: 95 NFNGIKIKGRTIRVD 109
>RGD|1562693 [details] [associations]
symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1562693 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107 CTD:51634
HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:BC158684 IPI:IPI00361641
RefSeq:NP_001107258.2 UniGene:Rn.67383 ProteinModelPortal:B0BN49
STRING:B0BN49 GeneID:367930 KEGG:rno:367930 UCSC:RGD:1562693
NextBio:691882 Genevestigator:B0BN49 Uniprot:B0BN49
Length = 328
Score = 120 (47.3 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAIT 149
WI L G+ E E D+ VF +YGEI N++L D++TG KG+ + YE+ A+
Sbjct: 37 WIFL-GGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVD 95
Query: 150 AMNGGELLTQTLTVD 164
NG ++ +T+ VD
Sbjct: 96 NFNGIKIKGRTIRVD 110
>UNIPROTKB|G3X6K3 [details] [associations]
symbol:LOC534630 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13107
GeneTree:ENSGT00600000084414 OMA:VFSQNRY EMBL:DAAA02072184
RefSeq:NP_001193477.1 UniGene:Bt.88830 Ensembl:ENSBTAT00000008205
GeneID:534630 KEGG:bta:534630 NextBio:20876482 Uniprot:G3X6K3
Length = 330
Score = 120 (47.3 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAIT 149
WI L G+ E E D+ VF +YGEI N++L D++TG KG+ + YE+ A+
Sbjct: 37 WIFL-GGLPYELTEGDIICVFSQYGEIVNINLVWDKKTGKSKGFCFLCYEDQRSTVLAVD 95
Query: 150 AMNGGELLTQTLTVD 164
NG ++ +T+ VD
Sbjct: 96 NFNGIKIKGRTIRVD 110
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 121 (47.7 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 27/90 (30%), Positives = 51/90 (56%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + + +++L+++FG GEI + L D+ TG GY + Y + ++A+ AI +
Sbjct: 69 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 128
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
NG L T+T+ V +A PS+ + N+
Sbjct: 129 NGLRLQTKTIKVSYA---RPSSASIRDANL 155
Score = 117 (46.2 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAI 148
GW I V + +A E L +FG +G + N+ + D T KG+ + N++EA AI
Sbjct: 303 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 362
Query: 149 TAMNGGELLTQTLTVDW 165
++NG L + L V +
Sbjct: 363 ASLNGYRLGDRVLQVSF 379
Score = 108 (43.1 bits), Expect = 0.00027, P = 0.00027
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQ 145
SI + V+G+ + + +L+ +F +YG I + +D+ TG +G I ++ EA+
Sbjct: 149 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 208
Query: 146 NAITAMNGGELLTQTLTVDWAFSNGPS 172
AI +NG + T + F+N PS
Sbjct: 209 EAIKGLNGQKPPGATEPITVKFANNPS 235
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 121 (47.7 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 27/90 (30%), Positives = 51/90 (56%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + + +++L+++FG GEI + L D+ TG GY + Y + ++A+ AI +
Sbjct: 70 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 129
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
NG L T+T+ V +A PS+ + N+
Sbjct: 130 NGLRLQTKTIKVSYA---RPSSASIRDANL 156
Score = 117 (46.2 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAI 148
GW I V + +A E L +FG +G + N+ + D T KG+ + N++EA AI
Sbjct: 304 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 363
Query: 149 TAMNGGELLTQTLTVDW 165
++NG L + L V +
Sbjct: 364 ASLNGYRLGDRVLQVSF 380
Score = 108 (43.1 bits), Expect = 0.00027, P = 0.00027
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQ 145
SI + V+G+ + + +L+ +F +YG I + +D+ TG +G I ++ EA+
Sbjct: 150 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 209
Query: 146 NAITAMNGGELLTQTLTVDWAFSNGPS 172
AI +NG + T + F+N PS
Sbjct: 210 EAIKGLNGQKPPGATEPITVKFANNPS 236
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 121 (47.7 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 27/90 (30%), Positives = 51/90 (56%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + + +++L+++FG GEI + L D+ TG GY + Y + ++A+ AI +
Sbjct: 70 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 129
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
NG L T+T+ V +A PS+ + N+
Sbjct: 130 NGLRLQTKTIKVSYA---RPSSASIRDANL 156
Score = 116 (45.9 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAI 148
GW I V + +A E L +FG +G + N+ + D T KG+ + N++EA AI
Sbjct: 305 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 364
Query: 149 TAMNGGELLTQTLTV 163
++NG L + L V
Sbjct: 365 ASLNGYRLGDRVLQV 379
Score = 108 (43.1 bits), Expect = 0.00027, P = 0.00027
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQ 145
SI + V+G+ + + +L+ +F +YG I + +D+ TG +G I ++ EA+
Sbjct: 150 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 209
Query: 146 NAITAMNGGELLTQTLTVDWAFSNGPS 172
AI +NG + T + F+N PS
Sbjct: 210 EAIKGLNGQKPPGATEPITVKFANNPS 236
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 121 (47.7 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 27/90 (30%), Positives = 50/90 (55%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + + +++L+++FG GEI + L D+ TG GY + Y ++A+ AI +
Sbjct: 70 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTL 129
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
NG L T+T+ V +A PS+ + N+
Sbjct: 130 NGLRLQTKTIKVSYA---RPSSASIRDANL 156
Score = 119 (46.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFE 142
P + GW I V + +A E+ L +FG +G + N+ + D T KG+ + N++
Sbjct: 298 PAHAGTGWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 357
Query: 143 EAQNAITAMNGGELLTQTLTVDW 165
EA AI ++NG L + L V +
Sbjct: 358 EAAVAIASLNGYRLGDRVLQVSF 380
>UNIPROTKB|G5E5I0 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:DAAA02067479
Ensembl:ENSBTAT00000019649 Uniprot:G5E5I0
Length = 338
Score = 120 (47.3 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAIT 149
WI L G+ E E D+ VF +YGEI N++L D++TG KG+ + YE+ A+
Sbjct: 37 WIFL-GGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVD 95
Query: 150 AMNGGELLTQTLTVD 164
NG ++ +T+ VD
Sbjct: 96 NFNGIKIKGRTIRVD 110
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 116 (45.9 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 94 VTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNG 153
V G+ E DL+ VF YG + +++ D+RTG +G+A + +E ++++ A+ NG
Sbjct: 22 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 81
Query: 154 GELLTQTLTVDWAFSNGPST 173
EL + + VD++ + T
Sbjct: 82 MELDGRRIRVDYSITKRAHT 101
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 116 (45.9 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 94 VTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNG 153
V G+ E DL+ VF YG + +++ D+RTG +G+A + +E ++++ A+ NG
Sbjct: 22 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 81
Query: 154 GELLTQTLTVDWAFSNGPST 173
EL + + VD++ + T
Sbjct: 82 MELDGRRIRVDYSITKRAHT 101
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ + G++ E E L+ VFG+YG I + L DR T +G+A + +E+ +A++A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 152 NGGELLTQTLTVDWA 166
NG L + + V+ A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 100 EAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQ 159
EA EDDL+ +F G + ++H+ D TG KG + EEA+ AI ++G L +
Sbjct: 13 EATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETLDGALLRNR 72
Query: 160 TLTVDWAFSNGPSTGPFKRK 179
+TV A +T P R+
Sbjct: 73 VITVSVARPQKQATRPAPRR 92
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 100 EAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQ 159
EA EDDL+ +F G + ++H+ D TG KG + EEA+ AI ++G L +
Sbjct: 13 EATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETLDGALLRNR 72
Query: 160 TLTVDWAFSNGPSTGPFKRK 179
+TV A +T P R+
Sbjct: 73 VITVSVARPQKQATRPAPRR 92
>TAIR|locus:2027438 [details] [associations]
symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
Genevestigator:Q9FZ84 Uniprot:Q9FZ84
Length = 155
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I V G+ + L+ FG +G+I + + LDR +G +G+ + Y++ E A NA+ AM
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAM 97
Query: 152 NGGELLTQTLTVDWAFSNGPSTGP-FKRK 179
EL + + V A S G G F R+
Sbjct: 98 QNKELDGRIIGVHPADSGGGGGGGGFARR 126
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 119 (46.9 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 26/85 (30%), Positives = 49/85 (57%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ + G+ ED L+ F +YGE+ + + LDR TG +G+ + + + E A +AI A+
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPF 176
+G +L + + V++A ++ S G F
Sbjct: 102 DGRDLHGRVVKVNYA-NDRTSGGGF 125
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 123 (48.4 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 32/98 (32%), Positives = 49/98 (50%)
Query: 73 ESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKG 132
E G G P RS + V G+ E+ E+ L+ F G +R + DR TG KG
Sbjct: 413 ELQGPRGSPNA-RSQPSKTLFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKG 468
Query: 133 YALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNG 170
+ +++ + E+A+ A AM GE+ +T+DWA G
Sbjct: 469 FGFVDFNSEEDAKTAKEAMEDGEIDGNKVTLDWAKPKG 506
>UNIPROTKB|Q9Y388 [details] [associations]
symbol:RBMX2 "RNA-binding motif protein, X-linked 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471107 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
EMBL:AL035423 EMBL:AF151837 EMBL:AL050405 EMBL:AK292855
EMBL:BC033750 IPI:IPI00032597 RefSeq:NP_057108.2 UniGene:Hs.740515
ProteinModelPortal:Q9Y388 SMR:Q9Y388 STRING:Q9Y388
PhosphoSite:Q9Y388 DMDM:62512110 PRIDE:Q9Y388
Ensembl:ENST00000305536 GeneID:51634 KEGG:hsa:51634 UCSC:uc004evt.3
CTD:51634 GeneCards:GC0XP129535 HGNC:HGNC:24282 HPA:HPA026609
neXtProt:NX_Q9Y388 PharmGKB:PA134872051 HOVERGEN:HBG056427
InParanoid:Q9Y388 OMA:HRHKRAR OrthoDB:EOG4FJ8B4 GenomeRNAi:51634
NextBio:55565 ArrayExpress:Q9Y388 Bgee:Q9Y388 CleanEx:HS_RBMX2
Genevestigator:Q9Y388 GermOnline:ENSG00000134597 Uniprot:Q9Y388
Length = 322
Score = 119 (46.9 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAIT 149
WI L G+ E E D+ VF +YGEI N++L D++TG KG+ + YE+ A+
Sbjct: 37 WIFL-GGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVD 95
Query: 150 AMNGGELLTQTLTVD 164
NG ++ +T+ VD
Sbjct: 96 NFNGIKIKGRTIRVD 110
>CGD|CAL0003946 [details] [associations]
symbol:orf19.1389 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016071 "mRNA metabolic process"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003946 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000101 KO:K14396
RefSeq:XP_714561.1 ProteinModelPortal:Q59YD7 GeneID:3643794
KEGG:cal:CaO19.1389 Uniprot:Q59YD7
Length = 163
Score = 114 (45.2 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 29/88 (32%), Positives = 43/88 (48%)
Query: 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEE 143
Q I+G + V V ++ + L+ F G I + + DR +G KGYA IE+E E
Sbjct: 22 QEEIDGRSVYVGNVDYQSTPEQLEEFFHGVGVIERVTILFDRFSGLPKGYAYIEFEQTES 81
Query: 144 AQNAITAMNGGELLTQTLTVDWAFSNGP 171
Q AI ++G E + L V +N P
Sbjct: 82 VQKAIDELHGKEFRGRELRVTAKRTNLP 109
>UNIPROTKB|F1PRG0 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 EMBL:AAEX03026906
Ensembl:ENSCAFT00000029787 Uniprot:F1PRG0
Length = 326
Score = 119 (46.9 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAIT 149
WI L G+ E E D+ VF +YGEI N++L D++TG KG+ + YE+ A+
Sbjct: 36 WIFL-GGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVD 94
Query: 150 AMNGGELLTQTLTVD 164
NG ++ +T+ VD
Sbjct: 95 NFNGIKIKGRTIRVD 109
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 123 (48.4 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 33/98 (33%), Positives = 49/98 (50%)
Query: 73 ESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKG 132
E G G P RS + V G+ E+ E+ L+ F G IR + DR TG KG
Sbjct: 471 ELQGPRGSPNA-RSQPSKTLFVKGLSEDTTEETLKESFD--GSIR-ARIVTDRETGSSKG 526
Query: 133 YALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNG 170
+ +++ + E+A+ A AM GE+ +T+DWA G
Sbjct: 527 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 564
>UNIPROTKB|F1NZD3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
Uniprot:F1NZD3
Length = 385
Score = 120 (47.3 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 29/88 (32%), Positives = 48/88 (54%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ + G++ E E L+ VFG+YG I + L DR T +G+A + +E+ +A++A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 152 NGGELLTQTLTVDWA----FSNGPSTGP 175
NG L + + V+ A F +G GP
Sbjct: 70 NGKSLDGKAIKVEQATKPSFESGGRRGP 97
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 123 (48.4 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 33/98 (33%), Positives = 49/98 (50%)
Query: 73 ESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKG 132
E G G P RS + V G+ E+ E+ L+ F G IR + DR TG KG
Sbjct: 476 ELQGPRGSPNA-RSQPSKTLFVKGLSEDTTEETLKESFD--GSIR-ARIVTDRETGSSKG 531
Query: 133 YALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNG 170
+ +++ + E+A+ A AM GE+ +T+DWA G
Sbjct: 532 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 569
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 123 (48.4 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 33/98 (33%), Positives = 49/98 (50%)
Query: 73 ESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKG 132
E G G P RS + V G+ E+ E+ L+ F G IR + DR TG KG
Sbjct: 476 ELQGPRGSPNA-RSQPSKTLFVKGLSEDTTEETLKESFD--GSIR-ARIVTDRETGSSKG 531
Query: 133 YALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNG 170
+ +++ + E+A+ A AM GE+ +T+DWA G
Sbjct: 532 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 569
>UNIPROTKB|J9P250 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:AAEX03026906
ProteinModelPortal:J9P250 Ensembl:ENSCAFT00000043973 Uniprot:J9P250
Length = 341
Score = 119 (46.9 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAIT 149
WI L G+ E E D+ VF +YGEI N++L D++TG KG+ + YE+ A+
Sbjct: 37 WIFL-GGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVD 95
Query: 150 AMNGGELLTQTLTVD 164
NG ++ +T+ VD
Sbjct: 96 NFNGIKIKGRTIRVD 110
>UNIPROTKB|A4RHN3 [details] [associations]
symbol:TIF35 "Eukaryotic translation initiation factor 3
subunit G" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 EMBL:CM001232 eggNOG:COG0724 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
RefSeq:XP_003715298.1 ProteinModelPortal:A4RHN3 STRING:A4RHN3
GeneID:2682994 KEGG:mgr:MGG_07109 OrthoDB:EOG4QJVX7 Uniprot:A4RHN3
Length = 303
Score = 118 (46.6 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 94 VTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNG 153
VT V E A+E +L+++F +G + + L DR TG KG+A I + + E+A A M+G
Sbjct: 227 VTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADREDAVKACNKMDG 286
Query: 154 GELLTQTLTVDWA 166
L V++A
Sbjct: 287 WGFKHLILRVEFA 299
>UNIPROTKB|G4MR34 [details] [associations]
symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
Length = 305
Score = 118 (46.6 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 91 IILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITA 150
++ V + E+ + ++F G++ N L DR TG KG+ EY + + A +A+
Sbjct: 9 VVFVGNIPYGLSEEQITDIFSRAGKVLNFRLVYDRETGKPKGFGFAEYPDNDSAASAVRN 68
Query: 151 MNGGELLTQTLTVDWAFSNG-PST 173
+N E++ + L VD FSN PST
Sbjct: 69 LNDTEIMGRKLRVD--FSNEKPST 90
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 123 (48.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 33/98 (33%), Positives = 49/98 (50%)
Query: 73 ESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKG 132
E G G P RS + V G+ E+ E+ L+ F G IR + DR TG KG
Sbjct: 566 ELQGPRGSPNA-RSQPSKTLFVKGLSEDTTEETLKESFD--GSIR-ARIVTDRETGSSKG 621
Query: 133 YALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNG 170
+ +++ + E+A+ A AM GE+ +T+DWA G
Sbjct: 622 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 659
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 119 (46.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 31/100 (31%), Positives = 52/100 (52%)
Query: 77 TDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALI 136
T G G + I V V + EDDL++VFG++GE+ ++ + +R GFV
Sbjct: 266 TQGNSG-ESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFV------ 318
Query: 137 EYENFEEAQNAITAMNGGELLTQTLTVDWAFS-NGPSTGP 175
+Y N A+ A++ +NG +L Q++ + W S + T P
Sbjct: 319 QYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQTQP 358
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 122 (48.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 32/98 (32%), Positives = 49/98 (50%)
Query: 73 ESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKG 132
E G G P RS + V G+ E+ E+ L+ F G +R + DR TG KG
Sbjct: 561 ELQGPRGSPNA-RSQPSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKG 616
Query: 133 YALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNG 170
+ +++ + E+A+ A AM GE+ +T+DWA G
Sbjct: 617 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 654
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 118 (46.6 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 32/106 (30%), Positives = 53/106 (50%)
Query: 58 EADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIR 117
+A+ R + +A+ N + G GP R + V +H ED L+ +F +G I
Sbjct: 72 QAEKNRAAAMAN-NLQK----GSAGPMR------LYVGSLHFNITEDMLRGIFEPFGRIE 120
Query: 118 NLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163
++ L +D TG KGY I + + E A+ A+ +NG EL + + V
Sbjct: 121 SIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 166
>FB|FBgn0085383 [details] [associations]
symbol:CG34354 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
Uniprot:A8JPX0
Length = 525
Score = 120 (47.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNA 147
E + I V + E + L++ F +GEI + + D +T KGY + + EA+ A
Sbjct: 94 EQFHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETA 153
Query: 148 ITAMNGGELLTQTLTVDWAFSNGPST 173
ITAMNG L ++++ +WA P+T
Sbjct: 154 ITAMNGQWLGSRSIRTNWATRKPPAT 179
>UNIPROTKB|F2Z2U1 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010141 HGNC:HGNC:9912
HGNC:HGNC:23914 EMBL:AC007322 HGNC:HGNC:23915 HGNC:HGNC:23916
IPI:IPI00916472 SMR:F2Z2U1 Ensembl:ENST00000358944
Ensembl:ENST00000361046 Ensembl:ENST00000382639
Ensembl:ENST00000382653 Uniprot:F2Z2U1
Length = 81
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ + G++ E E L+ VFG++G I + L DR T +G+A I +EN +A+NA M
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 152 NGGELLTQTLTV 163
NG +++ TL +
Sbjct: 69 NG-KMMVDTLLI 79
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V ++ + DL+ F YG +++ + +DR TG +G+ +E + +EAQ AI +
Sbjct: 5 LYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGL 64
Query: 152 NGGELLTQTLTVDWA 166
NG E+ + L V+ A
Sbjct: 65 NGKEMDGRNLMVNEA 79
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 119 (46.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 77 TDGGPGPQRSIEGWI-ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYAL 135
T G P+ I I V + E + + L+ F +GEI N + D T KGYA
Sbjct: 81 TSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAF 140
Query: 136 IEYENFEEAQNAITAMNGGELLTQTLTVDWA 166
+ + EA+NAI AMNG + ++++ +W+
Sbjct: 141 VSFVKKAEAENAIQAMNGQWIGSRSIRTNWS 171
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 118 (46.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 32/106 (30%), Positives = 53/106 (50%)
Query: 58 EADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIR 117
+A+ R + +A+ N + G GP R + V +H ED L+ +F +G I
Sbjct: 229 QAEKNRAAAMAN-NLQK----GSAGPMR------LYVGSLHFNITEDMLRGIFEPFGRIE 277
Query: 118 NLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163
++ L +D TG KGY I + + E A+ A+ +NG EL + + V
Sbjct: 278 SIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 121 (47.7 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 32/98 (32%), Positives = 49/98 (50%)
Query: 73 ESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKG 132
E G G P RS + V G+ E+ E+ L+ F G +R + DR TG KG
Sbjct: 556 ELQGPRGSPNA-RSQPSKTLFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKG 611
Query: 133 YALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNG 170
+ +++ + E+A+ A AM GE+ +T+DWA G
Sbjct: 612 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 649
>UNIPROTKB|E1C875 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
IPI:IPI00681985 ProteinModelPortal:E1C875
Ensembl:ENSGALT00000031186 Uniprot:E1C875
Length = 182
Score = 115 (45.5 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 94 VTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNG 153
V G+ E DL+ VF YG + +++ D+RTG +G+A + +E ++++ A+ NG
Sbjct: 22 VFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHANG 81
Query: 154 GELLTQTLTVDWAFSNGPST 173
EL + + VD++ + T
Sbjct: 82 MELDGRRIRVDYSITKRAHT 101
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 120 (47.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEA 144
R++E I V +H + E LQ++F ++G+I ++ + D +G +G+ + +E E+A
Sbjct: 186 RALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDD-SGHSRGFGFVNFEKHEDA 244
Query: 145 QNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRK 179
Q A+T MNG E+ + L V A KR+
Sbjct: 245 QKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRR 279
>UNIPROTKB|F1P133 [details] [associations]
symbol:F1P133 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:YMEGCAP EMBL:AADN02013152
IPI:IPI00575891 ProteinModelPortal:F1P133
Ensembl:ENSGALT00000006408 Uniprot:F1P133
Length = 166
Score = 113 (44.8 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 24/75 (32%), Positives = 43/75 (57%)
Query: 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAIT 149
W+ + G+ + E D+ VF +YGE+ N++L D++TG KG+ + YE+ A+
Sbjct: 37 WVF-IGGLPYQLTEGDVICVFSQYGEVVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVD 95
Query: 150 AMNGGELLTQTLTVD 164
NG ++ +T+ VD
Sbjct: 96 NFNGIKIKGRTIRVD 110
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 118 (46.6 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 24/77 (31%), Positives = 46/77 (59%)
Query: 104 DDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163
D L+++F +GEI + + +D TG +G+ +++++ AQ AI +MNG ++ +TL V
Sbjct: 113 DTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINSMNGAKVENKTLLV 172
Query: 164 DWAFSNGPSTGPFKRKN 180
+A S+ P++ N
Sbjct: 173 RFANSD-PNSNNTNNSN 188
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 119 (46.9 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V +H ED L+ +F +G+I + L +D TG KGY I Y N ++A+ A+ +
Sbjct: 337 LYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQL 396
Query: 152 NGGELLTQTLTV 163
NG EL + + V
Sbjct: 397 NGFELAGRLMKV 408
>MGI|MGI:2655711 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2655711
GO:GO:0005794 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
eggNOG:COG0724 GeneTree:ENSGT00550000074976 KO:K14573 EMBL:AC153909
CTD:55131 HOVERGEN:HBG073213 OrthoDB:EOG4SN1NH EMBL:AK012408
EMBL:AK013047 EMBL:AK019296 EMBL:AK019436 EMBL:AK156773
EMBL:BC018373 EMBL:BC040811 IPI:IPI00229472 RefSeq:NP_598686.2
UniGene:Mm.40802 PDB:1X4H PDBsum:1X4H ProteinModelPortal:Q8CGC6
SMR:Q8CGC6 DIP:DIP-58949N STRING:Q8CGC6 PhosphoSite:Q8CGC6
PaxDb:Q8CGC6 PRIDE:Q8CGC6 Ensembl:ENSMUST00000007993 GeneID:68272
KEGG:mmu:68272 UCSC:uc009bcx.2 InParanoid:Q8CGC6 OMA:SASASXA
EvolutionaryTrace:Q8CGC6 NextBio:326882 Bgee:Q8CGC6
CleanEx:MM_RBM28 Genevestigator:Q8CGC6
GermOnline:ENSMUSG00000029701 Uniprot:Q8CGC6
Length = 750
Score = 120 (47.3 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 24/76 (31%), Positives = 46/76 (60%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRT-GFVKGYALIEYENFEEAQNAITA 150
+++ + + EDDL+ VF YG + L +N+ ++ G ++G+A ++++N EA A+
Sbjct: 116 LIIRNLSFKCSEDDLKAVFTHYGTV--LEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKG 173
Query: 151 MNGGELLTQTLTVDWA 166
N E+ +T+ VDWA
Sbjct: 174 ANMKEIKGRTVAVDWA 189
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 118 (46.6 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 33/106 (31%), Positives = 53/106 (50%)
Query: 58 EADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIR 117
+A+ R + LA+ N + G GP R + V +H ED L+ +F +G I
Sbjct: 225 QAEKNRAAALAN-NLQK----GSAGPMR------LYVGSLHFNITEDMLRGIFEPFGRID 273
Query: 118 NLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163
++ L +D TG KGY I + + E A+ A+ +NG EL + + V
Sbjct: 274 SIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPMKV 319
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 118 (46.6 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 32/106 (30%), Positives = 53/106 (50%)
Query: 58 EADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIR 117
+A+ R + +A+ N + G GP R + V +H ED L+ +F +G I
Sbjct: 229 QAEKNRAAAMAN-NLQK----GSAGPMR------LYVGSLHFNITEDMLRGIFEPFGRIE 277
Query: 118 NLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163
++ L +D TG KGY I + + E A+ A+ +NG EL + + V
Sbjct: 278 SIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 118 (46.6 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 32/106 (30%), Positives = 53/106 (50%)
Query: 58 EADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIR 117
+A+ R + +A+ N + G GP R + V +H ED L+ +F +G I
Sbjct: 229 QAEKNRAAAMAN-NLQK----GSAGPMR------LYVGSLHFNITEDMLRGIFEPFGRIE 277
Query: 118 NLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163
++ L +D TG KGY I + + E A+ A+ +NG EL + + V
Sbjct: 278 SIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 118 (46.6 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 32/106 (30%), Positives = 53/106 (50%)
Query: 58 EADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIR 117
+A+ R + +A+ N + G GP R + V +H ED L+ +F +G I
Sbjct: 229 QAEKNRAAAMAN-NLQK----GSAGPMR------LYVGSLHFNITEDMLRGIFEPFGRIE 277
Query: 118 NLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163
++ L +D TG KGY I + + E A+ A+ +NG EL + + V
Sbjct: 278 SIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 118 (46.6 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 32/106 (30%), Positives = 53/106 (50%)
Query: 58 EADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIR 117
+A+ R + +A+ N + G GP R + V +H ED L+ +F +G I
Sbjct: 229 QAEKNRAAAMAN-NLQK----GSAGPMR------LYVGSLHFNITEDMLRGIFEPFGRIE 277
Query: 118 NLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163
++ L +D TG KGY I + + E A+ A+ +NG EL + + V
Sbjct: 278 SIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 118 (46.6 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 32/106 (30%), Positives = 53/106 (50%)
Query: 58 EADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIR 117
+A+ R + +A+ N + G GP R + V +H ED L+ +F +G I
Sbjct: 229 QAEKNRAAAMAN-NLQK----GSAGPMR------LYVGSLHFNITEDMLRGIFEPFGRIE 277
Query: 118 NLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163
++ L +D TG KGY I + + E A+ A+ +NG EL + + V
Sbjct: 278 SIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 118 (46.6 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 32/106 (30%), Positives = 53/106 (50%)
Query: 58 EADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIR 117
+A+ R + +A+ N + G GP R + V +H ED L+ +F +G I
Sbjct: 229 QAEKNRAAAMAN-NLQK----GSAGPMR------LYVGSLHFNITEDMLRGIFEPFGRIE 277
Query: 118 NLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163
++ L +D TG KGY I + + E A+ A+ +NG EL + + V
Sbjct: 278 SIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 118 (46.6 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 32/106 (30%), Positives = 53/106 (50%)
Query: 58 EADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIR 117
+A+ R + +A+ N + G GP R + V +H ED L+ +F +G I
Sbjct: 229 QAEKNRAAAMAN-NLQK----GSAGPMR------LYVGSLHFNITEDMLRGIFEPFGRIE 277
Query: 118 NLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163
++ L +D TG KGY I + + E A+ A+ +NG EL + + V
Sbjct: 278 SIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 118 (46.6 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 32/106 (30%), Positives = 53/106 (50%)
Query: 58 EADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIR 117
+A+ R + +A+ N + G GP R + V +H ED L+ +F +G I
Sbjct: 229 QAEKNRAAAMAN-NLQK----GSAGPMR------LYVGSLHFNITEDMLRGIFEPFGRIE 277
Query: 118 NLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163
++ L +D TG KGY I + + E A+ A+ +NG EL + + V
Sbjct: 278 SIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 118 (46.6 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 28/99 (28%), Positives = 50/99 (50%)
Query: 80 GPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYE 139
G G + +G + + + ++ + DL N F +G I + + +D+ T K + + YE
Sbjct: 493 GNGDVKGPDGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYE 552
Query: 140 NFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKR 178
N + A NAI+AMNG ++ ++ L V G P+ R
Sbjct: 553 NAQSATNAISAMNGFQIGSKRLKVQLKVDRG---NPYNR 588
>DICTYBASE|DDB_G0276725 [details] [associations]
symbol:DDB_G0276725 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0276725 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000019 eggNOG:COG0724
RefSeq:XP_643007.1 ProteinModelPortal:Q550X7
EnsemblProtists:DDB0202911 GeneID:8620667 KEGG:ddi:DDB_G0276725
InParanoid:Q550X7 Uniprot:Q550X7
Length = 78
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I V G++ ++ L+ F YGEI++L + TG +GYA IEY N E+A AI +
Sbjct: 6 IYVGGLNSHISKEILKTKFSVYGEIQSLVFVKGKETGISEGYAYIEYNNKEDAVKAIDDL 65
Query: 152 N 152
N
Sbjct: 66 N 66
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ + G++ E E L+ VFG+YG I + L DR T +G+A + +E+ +A++A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 152 NG 153
NG
Sbjct: 70 NG 71
WARNING: HSPs involving 278 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.133 0.387 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 196 161 0.00074 107 3 11 23 0.45 32
30 0.44 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 528
No. of states in DFA: 573 (61 KB)
Total size of DFA: 140 KB (2087 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.91u 0.12s 18.03t Elapsed: 00:00:01
Total cpu time: 17.92u 0.12s 18.04t Elapsed: 00:00:01
Start: Tue May 21 04:11:49 2013 End: Tue May 21 04:11:50 2013
WARNINGS ISSUED: 2