BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043064
(196 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B5DGI7|RBM8A_SALSA RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=2 SV=1
Length = 175
Score = 145 bits (367), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/171 (46%), Positives = 107/171 (62%), Gaps = 23/171 (13%)
Query: 6 VDALDFED----DDLMDEDGTADVDASSSPRAPQPKLKSAITGGAPKKTKGRGFREEADS 61
D LD + D MDEDG + KLK K+ KGRGF E +
Sbjct: 2 ADVLDLHEAGGEDFAMDEDGDDSI----------HKLKEK-----AKRRKGRGFGSEEGA 46
Query: 62 ERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLH 120
R +++++ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + F E+GEI+NLH
Sbjct: 47 RSRVR---EDYDTVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEFGEIKNLH 103
Query: 121 LNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGP 171
LNLDRRTG++KGYAL+EYE ++EAQ A+ +NG +++ Q ++VDW F GP
Sbjct: 104 LNLDRRTGYLKGYALVEYETYKEAQAAMEGLNGQDMMGQPISVDWGFVRGP 154
>sp|Q5D018|RBM8A_DANRE RNA-binding protein 8A OS=Danio rerio GN=rbm8a PE=2 SV=1
Length = 174
Score = 143 bits (360), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 67/121 (55%), Positives = 90/121 (74%), Gaps = 4/121 (3%)
Query: 52 GRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVF 110
GRGF E + R +++++ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + F
Sbjct: 37 GRGFGSEEGARSRVR---EDYDTVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDVHDKF 93
Query: 111 GEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNG 170
E+GEI+NLHLNLDRRTG++KGYAL+EYE ++EAQ A+ +NG EL+ Q ++VDW F G
Sbjct: 94 AEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAMEGLNGQELMGQPISVDWCFVRG 153
Query: 171 P 171
P
Sbjct: 154 P 154
>sp|Q28BZ1|RBM8A_XENTR RNA-binding protein 8A OS=Xenopus tropicalis GN=rbm8a PE=2 SV=1
Length = 174
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 94/124 (75%), Gaps = 4/124 (3%)
Query: 52 GRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVF 110
GRGF AD +R+ + +++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + F
Sbjct: 37 GRGFG--ADEGTRARIRE-DYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKF 93
Query: 111 GEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNG 170
GE+GEI+N+HLNLDRRTGF+KGYAL+EYE ++EA A+ +NG +L+ Q ++VDW F G
Sbjct: 94 GEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPISVDWGFVRG 153
Query: 171 PSTG 174
P G
Sbjct: 154 PPKG 157
>sp|Q6PH90|RB8AB_XENLA RNA-binding protein 8A-B OS=Xenopus laevis GN=rbm8a-b PE=2 SV=1
Length = 174
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 94/124 (75%), Gaps = 4/124 (3%)
Query: 52 GRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVF 110
GRGF AD +R+ + +++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + F
Sbjct: 37 GRGFG--ADEGTRTRIRE-DYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKF 93
Query: 111 GEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNG 170
GE+GEI+N+HLNLDRRTGF+KGYAL+EYE ++EA A+ +NG +L+ Q ++VDW F G
Sbjct: 94 GEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFVRG 153
Query: 171 PSTG 174
P G
Sbjct: 154 PPKG 157
>sp|Q9V535|RBM8A_DROME RNA-binding protein 8A OS=Drosophila melanogaster GN=tsu PE=1 SV=1
Length = 165
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 90/128 (70%), Gaps = 8/128 (6%)
Query: 48 KKTKGRGFREEADSERHSRLADRNFESLGTDGG----PGPQRSIEGWIILVTGVHEEAQE 103
K KGRGF S+ ++R A ++E + + PGPQRS+EGWI+ VT +HEEAQE
Sbjct: 31 KHRKGRGF----GSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQE 86
Query: 104 DDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163
D++Q F +YGEI+N+HLNLDRRTGF KGYAL+EYE ++A A A+NG E++ QT+ V
Sbjct: 87 DEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146
Query: 164 DWAFSNGP 171
DW F GP
Sbjct: 147 DWCFVKGP 154
>sp|Q9DF42|RB8AA_XENLA RNA-binding protein 8A-A OS=Xenopus laevis GN=rbm8a-a PE=2 SV=1
Length = 174
Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 93/124 (75%), Gaps = 4/124 (3%)
Query: 52 GRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVF 110
GRGF AD +R+ + ++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + F
Sbjct: 37 GRGFG--ADEGTKTRIREV-YDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKF 93
Query: 111 GEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNG 170
GE+GEI+N+HLNLDRRTGF+KGYAL+EYE ++EA A+ +NG +L+ Q ++VDW F G
Sbjct: 94 GEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFVRG 153
Query: 171 PSTG 174
P G
Sbjct: 154 PPKG 157
>sp|Q27W01|RBM8A_RAT RNA-binding protein 8A OS=Rattus norvegicus GN=Rbm8a PE=2 SV=1
Length = 174
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 87/117 (74%), Gaps = 4/117 (3%)
Query: 52 GRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVF 110
GRGF E S R +++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + F
Sbjct: 37 GRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKF 93
Query: 111 GEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167
EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+ +NG +L+ Q ++VDW F
Sbjct: 94 AEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 150
>sp|Q9Y5S9|RBM8A_HUMAN RNA-binding protein 8A OS=Homo sapiens GN=RBM8A PE=1 SV=1
Length = 174
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 87/117 (74%), Gaps = 4/117 (3%)
Query: 52 GRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVF 110
GRGF E S R +++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + F
Sbjct: 37 GRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKF 93
Query: 111 GEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167
EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+ +NG +L+ Q ++VDW F
Sbjct: 94 AEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 150
>sp|Q3ZCE8|RBM8A_BOVIN RNA-binding protein 8A OS=Bos taurus GN=RBM8A PE=2 SV=2
Length = 174
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 87/117 (74%), Gaps = 4/117 (3%)
Query: 52 GRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVF 110
GRGF E S R +++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + F
Sbjct: 37 GRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKF 93
Query: 111 GEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167
EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+ +NG +L+ Q ++VDW F
Sbjct: 94 AEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 150
>sp|Q9CWZ3|RBM8A_MOUSE RNA-binding protein 8A OS=Mus musculus GN=Rbm8a PE=1 SV=3
Length = 174
Score = 137 bits (346), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 64/117 (54%), Positives = 87/117 (74%), Gaps = 4/117 (3%)
Query: 52 GRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVF 110
GRGF + S R +++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + F
Sbjct: 37 GRGFGSKEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKF 93
Query: 111 GEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167
EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+ +NG +L+ Q ++VDW F
Sbjct: 94 AEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 150
>sp|O42847|YFH9_SCHPO Uncharacterized RNA-binding protein C23A1.09 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC23A1.09 PE=4 SV=1
Length = 121
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 75/109 (68%), Gaps = 7/109 (6%)
Query: 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFE 142
P +S+EG+II+VTGVH EA E+ ++++F ++G ++NLHLNLDRRTG+VKGYALIEY E
Sbjct: 3 PAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLE 62
Query: 143 EAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNMRPGRTHRSRS 191
+AQ A+ N LL + L VD+AF P P RP + RSRS
Sbjct: 63 QAQKAVDEKNLS-LLDEKLEVDFAFLEPPERAP------RPSISTRSRS 104
>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60
PE=2 SV=2
Length = 564
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I V VH++ +DD+++VF +G+I++ L D TG KGY IEYE + +Q+A+++M
Sbjct: 233 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 292
Query: 152 NGGELLTQTLTVDWAFS 168
N +L Q L V A +
Sbjct: 293 NLFDLGGQYLRVGKAVT 309
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V ++ E ED ++ F +G I+++ ++ D T KG+A +EYE E AQ A+ M
Sbjct: 136 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 195
Query: 152 N 152
N
Sbjct: 196 N 196
>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2
SV=2
Length = 564
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I V VH++ +DD+++VF +G+I++ L D TG KGY IEYE + +Q+A+++M
Sbjct: 233 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 292
Query: 152 NGGELLTQTLTVDWAFS 168
N +L Q L V A +
Sbjct: 293 NLFDLGGQYLRVGKAVT 309
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V ++ E ED ++ F +G I+++ ++ D T KG+A +EYE E AQ A+ M
Sbjct: 136 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 195
Query: 152 N 152
N
Sbjct: 196 N 196
>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1
SV=1
Length = 559
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I V VH++ +DD+++VF +G+I++ L D TG KGY IEYE + +Q+A+++M
Sbjct: 228 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 287
Query: 152 NGGELLTQTLTVDWAFS 168
N +L Q L V A +
Sbjct: 288 NLFDLGGQYLRVGKAVT 304
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V ++ E ED ++ F +G I+++ ++ D T KG+A +EYE E AQ A+ M
Sbjct: 131 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 190
Query: 152 NGGEL 156
N L
Sbjct: 191 NSVML 195
>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2
SV=1
Length = 558
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I V VH++ +DD+++VF +G+I++ L D TG KGY IEYE + +Q+A+++M
Sbjct: 227 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 286
Query: 152 NGGELLTQTLTVDWAFS 168
N +L Q L V A +
Sbjct: 287 NLFDLGGQYLRVGKAVT 303
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V ++ E ED ++ F +G I+++ ++ D T KG+A +EYE E AQ A+ M
Sbjct: 130 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 189
Query: 152 NGGEL 156
N L
Sbjct: 190 NSVML 194
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2
SV=1
Length = 530
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I V VH++ +DD+++VF +G+I++ L D TG KGY IEYE + +Q+A+++M
Sbjct: 199 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 258
Query: 152 NGGELLTQTLTVDWAFS 168
N +L Q L V A +
Sbjct: 259 NLFDLGGQYLRVGKAVT 275
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V ++ E ED ++ F +G I+++ ++ D T KG+A +EYE E AQ A+ M
Sbjct: 102 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 161
Query: 152 NGGEL 156
N L
Sbjct: 162 NSVML 166
>sp|Q4P7G1|EIF3G_USTMA Eukaryotic translation initiation factor 3 subunit G OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=TIF35 PE=3 SV=1
Length = 308
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ VT + E+A +DDL+ +F +G + +++ DR TG KGYA + +EN E+A A +
Sbjct: 227 LRVTNLSEDADDDDLRELFMRFGRVVRVYVGRDRETGICKGYAFVSFENREDADRARQKV 286
Query: 152 NGGELLTQTLTVDWAFSNG 170
+G L+ W+ G
Sbjct: 287 DGRGYDNLILSCQWSLPRG 305
>sp|Q6C747|EIF3G_YARLI Eukaryotic translation initiation factor 3 subunit G OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TIF35 PE=3 SV=1
Length = 294
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ VT + EEA +DDL+ +FG+YG I +++ DR TG +G+A + Y AQ A+ AM
Sbjct: 216 LRVTNLSEEATDDDLRRMFGKYGMINRVYVAKDRDTGRPRGFAFVTYTLKSHAQAALEAM 275
Query: 152 NGGELLTQTLTVDWA 166
+G + VD++
Sbjct: 276 DGHGFDNLIMKVDYS 290
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus
GN=Cstf2t PE=1 SV=2
Length = 632
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V + EA E+ L+++F E G + + L DR TG KGY EY++ E A +A+ +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 152 NGGELLTQTLTVDWAFS 168
NG E + L VD A S
Sbjct: 78 NGREFSGRALRVDNAAS 94
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1
SV=2
Length = 580
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V + EA E+ L+++F E G + + L DR TG KGY EY++ E A +A+ +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 152 NGGELLTQTLTVDWAFS 168
NG E + L VD A S
Sbjct: 78 NGREFSGRALRVDNAAS 94
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1
SV=1
Length = 577
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V + EA E+ L+++F E G + + L DR TG KGY EY++ E A +A+ +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 152 NGGELLTQTLTVDWAFS 168
NG E + L VD A S
Sbjct: 78 NGREFSGRALRVDNAAS 94
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2
SV=1
Length = 572
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V + EA E+ L+++F E G + + L DR TG KGY EY++ E A +A+ +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 152 NGGELLTQTLTVDWAFS 168
NG E + L VD A S
Sbjct: 78 NGREFSGRALRVDNAAS 94
>sp|Q1JQ73|ELV1A_XENLA ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-a PE=1 SV=1
Length = 337
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAI 148
GW I V + ++A E L +FG +G + N+ + D T KG+ + N+EEA AI
Sbjct: 254 GWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 313
Query: 149 TAMNGGELLTQTLTVDW 165
++NG L +TL V +
Sbjct: 314 ASLNGYRLGDKTLQVSF 330
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 14/101 (13%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGF-----------VKGYALIEYEN 140
++V + + +D+L+++F GE+ + L D+ GF GY + Y N
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYLN 81
Query: 141 FEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
++A+ AI +NG L ++T+ V +A PS+ K N+
Sbjct: 82 AKDAERAINTLNGLRLQSKTIKVSFA---RPSSESIKDANL 119
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 9/113 (7%)
Query: 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQ 145
SI+ + ++G+ + D++++F +G I N + +D+ TG +G A I ++ EA+
Sbjct: 113 SIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAE 172
Query: 146 NAITAMNGGEL--LTQTLTVDWAFSNGPSTGPFKRKNMRPGRTHRSRSPRRRY 196
AI + NG + ++ +TV +A P + KN+ + SP RR+
Sbjct: 173 EAIASFNGHKPPGSSEPITVKFA------ANPNQNKNVAL-LSQICHSPARRF 218
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2
SV=1
Length = 577
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V + EA E+ L+++F E G + + L DR TG KGY EY++ E A +A+ +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 152 NGGELLTQTLTVDWAFS 168
NG E + L VD A S
Sbjct: 78 NGREFSGRALRVDNAAS 94
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens
GN=CSTF2T PE=1 SV=1
Length = 616
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V + EA E+ L+++F E G + + L DR TG KGY EY++ E A +A+ +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 152 NGGELLTQTLTVDWAFS 168
NG E + L VD A S
Sbjct: 78 NGREFSGRALRVDNAAS 94
>sp|P70372|ELAV1_MOUSE ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=2
Length = 326
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%)
Query: 76 GTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYAL 135
G G P + GW I + + ++A E L +FG +G + N+ + D T KG+
Sbjct: 230 GISGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGF 289
Query: 136 IEYENFEEAQNAITAMNGGELLTQTLTVDW 165
+ N+EEA AI ++NG L + L V +
Sbjct: 290 VTMTNYEEAAMAIASLNGYRLGDKILQVSF 319
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 9/107 (8%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ ++G+ + D++++F +G I N + +D+ TG +G A I ++ EA+ AIT+
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 152 NGGEL--LTQTLTVDWAFSNGPSTGPFKRKNMRPGRTHRSRSPRRRY 196
NG + ++ +TV +A P + KNM + SP RR+
Sbjct: 168 NGHKPPGSSEPITVKFA------ANPNQNKNMAL-LSQLYHSPARRF 207
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + + +++L+++F GE+ + L D+ G GY + Y ++A+ AI+ +
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
NG L ++T+ V +A PS+ K N+
Sbjct: 82 NGLRLQSKTIKVSYA---RPSSEVIKDANL 108
>sp|Q15717|ELAV1_HUMAN ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2
Length = 326
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%)
Query: 76 GTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYAL 135
G G P + GW I + + ++A E L +FG +G + N+ + D T KG+
Sbjct: 230 GLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGF 289
Query: 136 IEYENFEEAQNAITAMNGGELLTQTLTVDW 165
+ N+EEA AI ++NG L + L V +
Sbjct: 290 VTMTNYEEAAMAIASLNGYRLGDKILQVSF 319
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + + +D+L+++F GE+ + L D+ G GY + Y ++A+ AI +
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
NG L ++T+ V +A PS+ K N+
Sbjct: 82 NGLRLQSKTIKVSYA---RPSSEVIKDANL 108
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 9/107 (8%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ ++G+ + D++++F +G I N + +D+ TG +G A I ++ EA+ AIT+
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 152 NGGEL--LTQTLTVDWAFSNGPSTGPFKRKNMRPGRTHRSRSPRRRY 196
NG + ++ +TV +A P + KN+ + SP RR+
Sbjct: 168 NGHKPPGSSEPITVKFA------ANPNQNKNVAL-LSQLYHSPARRF 207
>sp|Q9NW13|RBM28_HUMAN RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE=1 SV=3
Length = 759
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRT-GFVKGYALIEYENFEEAQNAITA 150
+++ + + EDDL+ VF ++G + L +N+ R+ G ++G+ ++++N EA A+
Sbjct: 116 LIIRNLSFKCSEDDLKTVFAQFGAV--LEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKG 173
Query: 151 MNGGELLTQTLTVDWAFSN 169
MN E+ +T+ VDWA +
Sbjct: 174 MNMKEIKGRTVAVDWAVAK 192
>sp|Q5U259|ELV1B_XENLA ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-b PE=1 SV=1
Length = 326
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAI 148
GW I + + ++A E L +FG +G + N+ + D T KG+ + N+EEA AI
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 149 TAMNGGELLTQTLTVDW 165
++NG L +TL V +
Sbjct: 303 ASLNGYRLGDKTLQVSF 319
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + + +D+L+++F GE+ + L D+ G GY + Y N ++A+ AI +
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTL 81
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
NG L ++T+ V +A PS+ K N+
Sbjct: 82 NGLRLQSKTIKVSFA---RPSSETIKDANL 108
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ ++G+ + D++++F +G I N + +D+ TG +G A I ++ EA+ AI +
Sbjct: 108 LYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 167
Query: 152 NGGEL--LTQTLTVDWAFSNGPSTGPFKRKNMRPGRTHRSRSPRRRY 196
NG + ++ +TV +A P + KNM + SP RR+
Sbjct: 168 NGHKPPGSSEPITVKFA------ANPNQSKNMAL-LSQICHSPARRF 207
>sp|Q6DRC4|EIF3G_DANRE Eukaryotic translation initiation factor 3 subunit G OS=Danio rerio
GN=eif3g PE=1 SV=1
Length = 293
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEE 143
+R+ + I VT + E+ +E DLQ +F +G I ++L D+ TG KG+A I + E+
Sbjct: 206 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKNTGQSKGFAFISFHRRED 265
Query: 144 AQNAITAMNGGELLTQTLTVDWA 166
A AI ++G L V+WA
Sbjct: 266 AARAIAGVSGFGYDHLILNVEWA 288
>sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2
Length = 375
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 61 SERHSRLADRNFESLGTDGGPG-PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNL 119
++R SR + + + + G P + GW I V + +A E L +FG +G + N+
Sbjct: 262 AQRFSRFSPMTIDGMTSLAGINFPGHAGTGWCIFVYNLAPDADESILWQMFGPFGAVTNV 321
Query: 120 HLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168
+ D T KG+ + N++EA AI ++NG L + L V + S
Sbjct: 322 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTS 370
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + + +++L+++FG GEI + L D+ TG GY + Y + ++A+ AI +
Sbjct: 69 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 128
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
NG L T+T+ V +A PS+ + N+
Sbjct: 129 NGLRLQTKTIKVSYA---RPSSASIRDANL 155
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ V+G+ + + +L+ +F +YG I + +D+ TG +G I ++ EA+ AI +
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 214
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNMRPGRTHRSRSPRRRY 196
NG + T + F+N PS +K + +SP RRY
Sbjct: 215 NGQKPPGATEPITVKFANNPS-----QKVNHTILSQLYQSPNRRY 254
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I V V + EDDL++VFG++GE+ ++ + +R GFV +Y N A+ A++ +
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFV------QYANRACAEQALSVL 333
Query: 152 NGGELLTQTLTVDWAFS 168
NG +L Q++ + W S
Sbjct: 334 NGTQLGGQSIRLSWGRS 350
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 103 EDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLT--QT 160
E+ L NVFG GE + +++ G+ +GY IE+ N A+ + NG + + Q
Sbjct: 93 ENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQA 152
Query: 161 LTVDWA 166
++WA
Sbjct: 153 FRLNWA 158
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 61 SERHSRLADRNFESLGTDGGPGPQRSIEG--WIILVTGVHEEAQEDDLQNVF-GEYGEIR 117
SE+ RL N+ LG G +R EG + V + + + L F Y ++
Sbjct: 149 SEQAFRL---NWAQLGA----GERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVK 201
Query: 118 NLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNG 153
+ DR TG KGY + + + E A+T MNG
Sbjct: 202 GAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNG 237
>sp|Q6GLB5|ELAV1_XENTR ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1
Length = 326
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNA 147
GW I + + ++A E L +FG +G + N+ + D T KG+ + N+EEA A
Sbjct: 242 SGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMA 301
Query: 148 ITAMNGGELLTQTLTV 163
I ++NG L +TL V
Sbjct: 302 IASLNGYRLGDKTLQV 317
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
++V + + +D+L+++F GE+ + L D+ G GY + Y N ++A+ AI +
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTL 81
Query: 152 NGGELLTQTLTVDWAFSNGPSTGPFKRKNM 181
NG L ++T+ V A PS+ K N+
Sbjct: 82 NGLRLQSKTIKVSVA---RPSSESIKDANL 108
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 9/113 (7%)
Query: 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQ 145
SI+ + ++G+ + D++++F +G I N + +D+ TG +G A I ++ EA+
Sbjct: 102 SIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAE 161
Query: 146 NAITAMNGGEL--LTQTLTVDWAFSNGPSTGPFKRKNMRPGRTHRSRSPRRRY 196
AI + NG + ++ +TV +A P + KNM + SP RR+
Sbjct: 162 EAIASFNGHKPPGSSEPITVKFA------ANPNQNKNMAL-LSQLCHSPARRF 207
>sp|Q9Z1D1|EIF3G_MOUSE Eukaryotic translation initiation factor 3 subunit G OS=Mus
musculus GN=Eif3g PE=1 SV=2
Length = 320
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I VT + E+ +E DLQ +F +G I ++L D+ TG KG+A I + E+A AI +
Sbjct: 241 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 300
Query: 152 NGGELLTQTLTVDWAFSNGPST 173
+G L V+WA PST
Sbjct: 301 SGFGYDHLILNVEWA---KPST 319
>sp|Q641B2|EI3GB_XENLA Eukaryotic translation initiation factor 3 subunit G-B OS=Xenopus
laevis GN=eif3g-b PE=2 SV=1
Length = 308
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEE 143
+R+ + I VT + E+ +E DLQ +F +G I ++L D+ TG KG+A I + E+
Sbjct: 221 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 280
Query: 144 AQNAITAMNGGELLTQTLTVDWAFSNGPST 173
A AI ++G L V+WA PST
Sbjct: 281 AARAIAGVSGFGYDHLILNVEWA---KPST 307
>sp|O75821|EIF3G_HUMAN Eukaryotic translation initiation factor 3 subunit G OS=Homo
sapiens GN=EIF3G PE=1 SV=2
Length = 320
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEE 143
+R+ + I VT + E+ +E DLQ +F +G I ++L D+ TG KG+A I + E+
Sbjct: 233 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 292
Query: 144 AQNAITAMNGGELLTQTLTVDWAFSNGPST 173
A AI ++G L V+WA PST
Sbjct: 293 AARAIAGVSGFGYDHLILNVEWA---KPST 319
>sp|Q6DJI8|EI3GA_XENLA Eukaryotic translation initiation factor 3 subunit G-A OS=Xenopus
laevis GN=eif3g-a PE=2 SV=1
Length = 308
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEE 143
+R+ + I VT + E+ +E DLQ +F +G I ++L D+ TG KG+A I + E+
Sbjct: 221 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 280
Query: 144 AQNAITAMNGGELLTQTLTVDWAFSNGPST 173
A AI ++G L V+WA PST
Sbjct: 281 AARAIAGVSGFGYDHLILNVEWA---KPST 307
>sp|Q5RK09|EIF3G_RAT Eukaryotic translation initiation factor 3 subunit G OS=Rattus
norvegicus GN=Eif3g PE=2 SV=1
Length = 320
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEE 143
+R+ + I VT + E+ +E DLQ +F +G I ++L D+ TG KG+A I + E+
Sbjct: 233 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 292
Query: 144 AQNAITAMNGGELLTQTLTVDWAFSNGPST 173
A AI ++G L V+WA PST
Sbjct: 293 AARAIAGVSGFGYDHLILNVEWA---KPST 319
>sp|Q28CY2|EIF3G_XENTR Eukaryotic translation initiation factor 3 subunit G OS=Xenopus
tropicalis GN=eif3g PE=2 SV=1
Length = 310
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I VT + E+ +E DLQ +F +G I ++L D+ TG KG+A I + E+A AI +
Sbjct: 231 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 290
Query: 152 NGGELLTQTLTVDWAFSNGPST 173
+G L V+WA PST
Sbjct: 291 SGFGYDHLILNVEWA---KPST 309
>sp|Q3ZC12|EIF3G_BOVIN Eukaryotic translation initiation factor 3 subunit G OS=Bos taurus
GN=EIF3G PE=2 SV=1
Length = 320
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I VT + E+ +E DLQ +F +G I ++L D+ TG KG+A I + E+A AI +
Sbjct: 241 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 300
Query: 152 NGGELLTQTLTVDWAFSNGPST 173
+G L V+WA PST
Sbjct: 301 SGFGYDHLILNVEWA---KPST 319
>sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus
GN=Rbmxl1 PE=1 SV=1
Length = 388
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ + G++ E E L+ VFG+YG I + L DR T +G+A + +E+ +A++A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 152 NGGELLTQTLTVDWA 166
NG L + + V+ A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis
GN=RBMX PE=2 SV=1
Length = 391
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ + G++ E E L+ VFG+YG I + L DR T +G+A + +E+ +A++A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 152 NGGELLTQTLTVDWA 166
NG L + + V+ A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes GN=RBMX
PE=2 SV=1
Length = 391
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ + G++ E E L+ VFG+YG I + L DR T +G+A + +E+ +A++A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 152 NGGELLTQTLTVDWA 166
NG L + + V+ A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX
PE=1 SV=3
Length = 391
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ + G++ E E L+ VFG+YG I + L DR T +G+A + +E+ +A++A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 152 NGGELLTQTLTVDWA 166
NG L + + V+ A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ + G++ E E L+ VFG+YG I + L DR T +G+A + +E+ +A++A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 152 NGGELLTQTLTVDWA 166
NG L + + V+ A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ + G++ E E L+ VFG+YG I + L DR T +G+A + +E+ +A++A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 152 NGGELLTQTLTVDWA 166
NG L + + V+ A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>sp|Q9WX37|RBPE_NOSS1 Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpE PE=3 SV=3
Length = 99
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
I V + +DDL VF EYG + + L DR TG V+G+ +E E+ AI A+
Sbjct: 3 IYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQAL 62
Query: 152 NGGELLTQTLTVD 164
+G E + + L V+
Sbjct: 63 DGAEWMGRVLKVN 75
>sp|Q19706|EIF3G_CAEEL Eukaryotic translation initiation factor 3 subunit G
OS=Caenorhabditis elegans GN=eif-3.G PE=3 SV=1
Length = 256
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 57 EEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEI 116
EEAD+++ + DR + DG + + VT + +E ED+L+++FG+ G +
Sbjct: 144 EEADADKDTE-KDRMAMGMRPDGRQIDRNRSDENTCRVTNLPQEMNEDELRDLFGKIGRV 202
Query: 117 RNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165
+ + D+ TG KG+A + +E+ ++A AI +N + L V+W
Sbjct: 203 IRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELNDIRMYHMVLKVEW 251
>sp|Q96E39|RMXL1_HUMAN RNA binding motif protein, X-linked-like-1 OS=Homo sapiens
GN=RBMXL1 PE=1 SV=1
Length = 390
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151
+ + G++ E E L+ VFG+YG I + L DR T +G+A + +E+ +A++A M
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 152 NGGELLTQTLTVDWA 166
NG L + + V+ A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>sp|P62997|TRA2B_RAT Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b
PE=1 SV=1
Length = 288
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 61 SERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLH 120
S HS ++ R +G P P + V G+ E DL+ VF +YG I ++
Sbjct: 95 SHSHSPMSTRR-RHVGNRANPDPN-----CCLGVFGLSLYTTERDLREVFSKYGPIADVS 148
Query: 121 LNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPST 173
+ D+++ +G+A + +EN ++A+ A NG EL + + VD++ + P T
Sbjct: 149 IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHT 201
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,224,340
Number of Sequences: 539616
Number of extensions: 3672491
Number of successful extensions: 9680
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 265
Number of HSP's that attempted gapping in prelim test: 8470
Number of HSP's gapped (non-prelim): 1392
length of query: 196
length of database: 191,569,459
effective HSP length: 111
effective length of query: 85
effective length of database: 131,672,083
effective search space: 11192127055
effective search space used: 11192127055
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)