Query 043064
Match_columns 196
No_of_seqs 203 out of 2109
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 12:29:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043064.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043064hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0130 RNA-binding protein RB 99.9 6.5E-25 1.4E-29 153.8 10.0 136 34-174 22-157 (170)
2 TIGR01659 sex-lethal sex-letha 99.9 4E-21 8.6E-26 159.0 13.1 139 28-171 130-277 (346)
3 PLN03134 glycine-rich RNA-bind 99.9 2.2E-20 4.8E-25 136.7 14.9 87 86-172 31-117 (144)
4 KOG0148 Apoptosis-promoting RN 99.8 1.5E-19 3.3E-24 140.3 12.2 133 28-171 85-240 (321)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 4.7E-19 1E-23 147.4 14.9 82 90-171 270-351 (352)
6 TIGR01645 half-pint poly-U bin 99.8 2.2E-19 4.8E-24 156.6 12.6 139 29-172 131-287 (612)
7 TIGR01622 SF-CC1 splicing fact 99.7 1.8E-17 4E-22 142.5 13.6 129 33-167 117-264 (457)
8 KOG0131 Splicing factor 3b, su 99.7 2E-18 4.4E-23 127.0 6.5 140 29-173 33-181 (203)
9 KOG4207 Predicted splicing fac 99.7 1.5E-17 3.3E-22 124.7 9.3 89 83-171 7-95 (256)
10 TIGR01659 sex-lethal sex-letha 99.7 4.7E-17 1E-21 134.8 11.7 87 83-169 101-187 (346)
11 TIGR01648 hnRNP-R-Q heterogene 99.7 1.2E-16 2.7E-21 139.2 14.3 117 47-172 178-310 (578)
12 TIGR01642 U2AF_lg U2 snRNP aux 99.7 8.1E-17 1.8E-21 140.2 13.0 83 88-170 294-376 (509)
13 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.1E-16 2.4E-21 133.3 12.7 138 28-170 26-172 (352)
14 KOG0122 Translation initiation 99.7 4.3E-17 9.4E-22 125.0 9.3 83 87-169 187-269 (270)
15 PF00076 RRM_1: RNA recognitio 99.7 1.3E-16 2.8E-21 102.1 9.5 70 92-162 1-70 (70)
16 TIGR01628 PABP-1234 polyadenyl 99.7 1.8E-16 3.9E-21 139.8 12.5 122 47-170 215-365 (562)
17 KOG0107 Alternative splicing f 99.7 2.1E-16 4.6E-21 115.7 10.1 78 89-171 10-87 (195)
18 KOG0117 Heterogeneous nuclear 99.7 9.8E-17 2.1E-21 132.1 9.2 117 47-172 204-334 (506)
19 KOG0144 RNA-binding protein CU 99.7 7.9E-17 1.7E-21 132.2 8.0 142 29-175 58-212 (510)
20 KOG0145 RNA-binding protein EL 99.7 1.2E-16 2.6E-21 123.8 7.9 135 31-170 67-210 (360)
21 KOG0121 Nuclear cap-binding pr 99.7 2.5E-16 5.5E-21 109.8 7.6 82 87-168 34-115 (153)
22 TIGR01628 PABP-1234 polyadenyl 99.7 6.3E-16 1.4E-20 136.3 11.4 136 29-170 24-168 (562)
23 KOG0127 Nucleolar protein fibr 99.7 1.1E-15 2.4E-20 128.8 11.5 83 88-171 116-198 (678)
24 KOG0113 U1 small nuclear ribon 99.6 4.5E-15 9.7E-20 116.9 12.5 89 86-174 98-186 (335)
25 PF14259 RRM_6: RNA recognitio 99.6 4.6E-15 9.9E-20 95.3 9.8 70 92-162 1-70 (70)
26 KOG0149 Predicted RNA-binding 99.6 2E-15 4.4E-20 115.4 9.2 83 85-168 8-90 (247)
27 PLN03120 nucleic acid binding 99.6 8.5E-15 1.8E-19 115.1 11.0 77 89-169 4-80 (260)
28 KOG0117 Heterogeneous nuclear 99.6 4.7E-15 1E-19 122.3 8.9 151 18-173 96-252 (506)
29 TIGR01645 half-pint poly-U bin 99.6 6.2E-15 1.3E-19 129.0 10.1 81 88-168 106-186 (612)
30 KOG0145 RNA-binding protein EL 99.6 4.5E-14 9.8E-19 109.6 13.0 84 87-170 276-359 (360)
31 KOG0105 Alternative splicing f 99.6 1.6E-14 3.4E-19 107.0 9.4 80 88-170 5-84 (241)
32 KOG0126 Predicted RNA-binding 99.6 6.7E-16 1.4E-20 113.8 1.3 83 85-167 31-113 (219)
33 TIGR01648 hnRNP-R-Q heterogene 99.6 1.4E-14 3E-19 126.4 9.5 139 27-171 80-224 (578)
34 KOG0111 Cyclophilin-type pepti 99.6 4.7E-15 1E-19 112.5 5.5 92 85-176 6-97 (298)
35 KOG0124 Polypyrimidine tract-b 99.6 3.3E-14 7.1E-19 115.0 10.3 135 29-168 137-289 (544)
36 PLN03213 repressor of silencin 99.6 2E-14 4.4E-19 120.1 9.3 78 88-169 9-88 (759)
37 KOG0123 Polyadenylate-binding 99.5 7.4E-14 1.6E-18 116.6 11.4 135 27-172 20-156 (369)
38 smart00362 RRM_2 RNA recogniti 99.5 8.5E-14 1.8E-18 88.4 8.9 72 91-164 1-72 (72)
39 KOG0125 Ataxin 2-binding prote 99.5 4.5E-14 9.7E-19 112.6 8.9 81 89-171 96-176 (376)
40 TIGR01622 SF-CC1 splicing fact 99.5 1.1E-13 2.4E-18 119.1 11.2 83 86-169 86-168 (457)
41 PLN03121 nucleic acid binding 99.5 1.3E-13 2.8E-18 106.9 10.2 76 88-167 4-79 (243)
42 KOG0148 Apoptosis-promoting RN 99.5 8.1E-14 1.8E-18 108.6 8.7 86 85-170 58-143 (321)
43 KOG0114 Predicted RNA-binding 99.5 1.6E-13 3.4E-18 92.5 8.6 79 89-170 18-96 (124)
44 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 1.4E-13 3.1E-18 119.3 10.4 80 88-169 393-480 (481)
45 KOG0415 Predicted peptidyl pro 99.5 8.2E-14 1.8E-18 112.2 8.0 87 85-171 235-321 (479)
46 smart00360 RRM RNA recognition 99.5 2E-13 4.4E-18 86.3 8.4 71 94-164 1-71 (71)
47 KOG0127 Nucleolar protein fibr 99.5 4.4E-13 9.6E-18 113.2 11.8 84 87-170 290-379 (678)
48 COG0724 RNA-binding proteins ( 99.5 2.9E-13 6.2E-18 107.2 9.9 80 89-168 115-194 (306)
49 KOG0131 Splicing factor 3b, su 99.5 9.6E-14 2.1E-18 102.5 6.3 81 87-167 7-87 (203)
50 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 4.6E-13 1E-17 116.1 11.3 78 87-169 273-351 (481)
51 KOG0109 RNA-binding protein LA 99.5 1.2E-13 2.6E-18 108.7 6.4 115 51-174 36-155 (346)
52 KOG0147 Transcriptional coacti 99.5 1.5E-13 3.2E-18 116.1 7.4 82 88-169 277-358 (549)
53 KOG0108 mRNA cleavage and poly 99.5 2.3E-13 4.9E-18 114.9 8.5 83 90-172 19-101 (435)
54 cd00590 RRM RRM (RNA recogniti 99.4 1.2E-12 2.5E-17 83.5 9.7 74 91-165 1-74 (74)
55 TIGR01642 U2AF_lg U2 snRNP aux 99.4 7.8E-13 1.7E-17 115.3 10.2 81 88-168 408-501 (509)
56 KOG0110 RNA-binding protein (R 99.4 5.6E-13 1.2E-17 115.5 7.2 120 50-170 559-694 (725)
57 PF13893 RRM_5: RNA recognitio 99.4 4.9E-12 1.1E-16 77.7 8.0 56 106-166 1-56 (56)
58 KOG0124 Polypyrimidine tract-b 99.4 7.1E-13 1.5E-17 107.3 5.0 77 89-165 113-189 (544)
59 KOG4205 RNA-binding protein mu 99.3 3.5E-12 7.6E-17 103.6 8.5 134 35-173 36-180 (311)
60 KOG0109 RNA-binding protein LA 99.3 2.1E-12 4.6E-17 101.7 5.8 73 90-170 3-75 (346)
61 KOG4206 Spliceosomal protein s 99.3 6.2E-12 1.4E-16 96.0 8.2 83 87-172 7-93 (221)
62 KOG0153 Predicted RNA-binding 99.3 1.4E-11 2.9E-16 99.2 9.6 83 80-168 219-302 (377)
63 KOG0144 RNA-binding protein CU 99.3 5E-12 1.1E-16 104.3 7.3 85 87-171 32-119 (510)
64 smart00361 RRM_1 RNA recogniti 99.3 1.6E-11 3.4E-16 79.0 8.0 61 103-163 2-69 (70)
65 KOG0146 RNA-binding protein ET 99.3 7.3E-12 1.6E-16 97.8 6.0 88 85-172 281-368 (371)
66 KOG4208 Nucleolar RNA-binding 99.2 3.7E-11 8.1E-16 90.5 8.4 87 83-169 43-130 (214)
67 KOG4212 RNA-binding protein hn 99.2 3.8E-11 8.3E-16 99.4 9.1 79 88-167 43-122 (608)
68 KOG0123 Polyadenylate-binding 99.2 5.5E-11 1.2E-15 99.4 8.8 136 28-170 190-350 (369)
69 KOG0132 RNA polymerase II C-te 99.1 1.1E-10 2.4E-15 102.3 7.5 82 86-173 418-499 (894)
70 KOG4212 RNA-binding protein hn 99.1 2.3E-10 5.1E-15 94.8 8.0 80 82-166 529-608 (608)
71 KOG4661 Hsp27-ERE-TATA-binding 99.1 9.7E-10 2.1E-14 93.8 11.4 87 85-171 401-487 (940)
72 KOG0116 RasGAP SH3 binding pro 99.1 7.4E-10 1.6E-14 93.3 9.7 82 89-171 288-369 (419)
73 KOG0533 RRM motif-containing p 99.0 1.5E-09 3.3E-14 85.2 8.0 80 89-169 83-162 (243)
74 KOG4205 RNA-binding protein mu 99.0 6E-10 1.3E-14 90.6 5.5 85 88-173 5-89 (311)
75 KOG0110 RNA-binding protein (R 99.0 2.1E-09 4.6E-14 93.6 8.1 76 92-167 518-596 (725)
76 KOG4209 Splicing factor RNPS1, 99.0 3.5E-09 7.6E-14 83.1 8.2 87 84-171 96-182 (231)
77 KOG1457 RNA binding protein (c 98.9 1.5E-08 3.3E-13 77.5 10.2 86 87-172 32-121 (284)
78 KOG0146 RNA-binding protein ET 98.9 3E-09 6.4E-14 83.3 6.5 83 88-171 18-103 (371)
79 KOG0106 Alternative splicing f 98.9 2.9E-09 6.2E-14 82.0 5.8 73 90-170 2-74 (216)
80 KOG1548 Transcription elongati 98.8 1.4E-08 3.1E-13 82.0 7.8 80 88-168 133-220 (382)
81 PF04059 RRM_2: RNA recognitio 98.8 4.9E-08 1.1E-12 66.3 9.1 79 90-168 2-86 (97)
82 KOG0151 Predicted splicing reg 98.8 1.7E-08 3.6E-13 88.2 6.5 81 88-168 173-256 (877)
83 KOG4660 Protein Mei2, essentia 98.7 1.2E-08 2.6E-13 87.0 4.0 73 85-162 71-143 (549)
84 KOG4211 Splicing factor hnRNP- 98.6 3.5E-07 7.5E-12 77.2 10.0 118 47-166 45-179 (510)
85 KOG4454 RNA binding protein (R 98.5 5E-08 1.1E-12 74.5 2.3 79 89-169 9-87 (267)
86 KOG1190 Polypyrimidine tract-b 98.5 7.7E-07 1.7E-11 73.6 8.2 75 89-168 297-372 (492)
87 KOG0226 RNA-binding proteins [ 98.5 2.3E-07 5E-12 72.3 4.7 85 85-169 186-270 (290)
88 KOG0106 Alternative splicing f 98.5 3.2E-07 6.9E-12 70.8 5.4 73 86-166 96-168 (216)
89 KOG4211 Splicing factor hnRNP- 98.4 1.7E-06 3.7E-11 73.1 9.5 80 87-170 8-87 (510)
90 KOG0120 Splicing factor U2AF, 98.4 2.1E-07 4.5E-12 79.8 4.2 84 87-170 287-370 (500)
91 PF11608 Limkain-b1: Limkain b 98.4 1.7E-06 3.7E-11 56.5 6.4 68 90-167 3-75 (90)
92 KOG4210 Nuclear localization s 98.4 1.9E-06 4.2E-11 69.9 8.1 83 89-172 184-267 (285)
93 KOG0105 Alternative splicing f 98.4 1.7E-05 3.7E-10 59.4 12.3 71 80-157 106-176 (241)
94 KOG1995 Conserved Zn-finger pr 98.3 6E-07 1.3E-11 73.1 4.5 87 85-171 62-156 (351)
95 KOG0147 Transcriptional coacti 98.1 8.8E-07 1.9E-11 75.6 1.8 82 85-167 175-256 (549)
96 PF08777 RRM_3: RNA binding mo 98.1 6.5E-06 1.4E-10 56.9 5.8 70 89-164 1-75 (105)
97 KOG4206 Spliceosomal protein s 98.1 1.2E-05 2.7E-10 61.8 7.8 77 86-167 143-220 (221)
98 KOG1457 RNA binding protein (c 98.1 2.6E-06 5.5E-11 65.5 3.8 68 86-157 207-274 (284)
99 COG5175 MOT2 Transcriptional r 98.1 1.3E-05 2.8E-10 65.1 7.2 86 85-170 110-204 (480)
100 KOG4849 mRNA cleavage factor I 98.0 7.2E-06 1.6E-10 66.8 3.7 75 89-163 80-156 (498)
101 KOG2314 Translation initiation 97.8 6.5E-05 1.4E-09 64.8 7.2 75 89-164 58-139 (698)
102 KOG3152 TBP-binding protein, a 97.8 1.9E-05 4.2E-10 61.8 3.5 73 88-160 73-157 (278)
103 KOG2416 Acinus (induces apopto 97.8 8.6E-05 1.9E-09 64.4 7.6 80 82-167 437-520 (718)
104 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00011 2.4E-09 44.3 4.9 52 90-148 2-53 (53)
105 KOG1456 Heterogeneous nuclear 97.7 0.00045 9.7E-09 57.1 9.4 81 84-169 282-363 (494)
106 KOG1456 Heterogeneous nuclear 97.6 0.00045 9.8E-09 57.0 8.9 84 82-170 113-200 (494)
107 KOG1190 Polypyrimidine tract-b 97.6 0.00024 5.3E-09 59.2 6.6 77 88-168 413-490 (492)
108 KOG0112 Large RNA-binding prot 97.5 0.00015 3.3E-09 65.6 5.2 80 85-170 451-532 (975)
109 KOG4307 RNA binding protein RB 97.5 0.00044 9.6E-09 61.2 7.9 75 90-165 868-943 (944)
110 KOG0128 RNA-binding protein SA 97.5 4.6E-05 1E-09 68.4 1.9 110 47-168 705-814 (881)
111 KOG0120 Splicing factor U2AF, 97.4 0.00053 1.2E-08 59.3 7.5 65 104-168 424-491 (500)
112 KOG1855 Predicted RNA-binding 97.3 0.00033 7.1E-09 58.7 4.8 71 85-155 227-310 (484)
113 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0018 3.9E-08 44.3 7.6 77 89-167 6-90 (100)
114 KOG1548 Transcription elongati 97.2 0.0046 1E-07 50.7 10.4 84 82-169 258-352 (382)
115 KOG1365 RNA-binding protein Fu 97.2 0.00063 1.4E-08 56.4 4.8 78 87-165 278-358 (508)
116 PF08952 DUF1866: Domain of un 97.1 0.0027 5.7E-08 46.2 7.3 59 104-171 51-109 (146)
117 KOG0129 Predicted RNA-binding 97.0 0.0027 5.9E-08 54.5 7.1 67 84-150 365-432 (520)
118 KOG0129 Predicted RNA-binding 96.8 0.0034 7.3E-08 53.9 6.2 63 87-150 257-325 (520)
119 KOG2193 IGF-II mRNA-binding pr 96.8 0.0014 3.1E-08 55.0 3.8 76 90-171 2-78 (584)
120 KOG4676 Splicing factor, argin 96.7 0.0032 7E-08 52.4 5.0 75 91-166 9-87 (479)
121 KOG2202 U2 snRNP splicing fact 96.5 0.0014 3E-08 51.6 1.6 61 105-166 84-145 (260)
122 KOG1365 RNA-binding protein Fu 96.4 0.011 2.3E-07 49.3 6.4 73 89-163 161-237 (508)
123 KOG0128 RNA-binding protein SA 96.3 0.00024 5.1E-09 64.0 -3.7 69 89-157 667-735 (881)
124 PF03467 Smg4_UPF3: Smg-4/UPF3 96.3 0.0095 2.1E-07 45.1 5.3 81 88-168 6-97 (176)
125 KOG0115 RNA-binding protein p5 96.3 0.0085 1.8E-07 47.3 4.9 61 90-151 32-92 (275)
126 KOG1996 mRNA splicing factor [ 96.2 0.018 3.8E-07 46.4 6.5 64 104-167 301-365 (378)
127 PF08675 RNA_bind: RNA binding 96.2 0.03 6.5E-07 36.8 6.3 56 89-153 9-64 (87)
128 PF10309 DUF2414: Protein of u 96.0 0.046 1E-06 33.9 6.4 55 89-151 5-62 (62)
129 KOG2135 Proteins containing th 96.0 0.0057 1.2E-07 52.1 3.2 77 87-170 370-447 (526)
130 KOG4307 RNA binding protein RB 96.0 0.0064 1.4E-07 54.1 3.4 75 89-164 434-509 (944)
131 KOG2068 MOT2 transcription fac 96.0 0.0028 6.1E-08 51.7 1.0 84 87-171 75-165 (327)
132 PF15023 DUF4523: Protein of u 95.9 0.067 1.4E-06 38.8 7.5 75 85-167 82-160 (166)
133 PF04847 Calcipressin: Calcipr 95.9 0.025 5.5E-07 43.0 5.7 63 102-170 8-72 (184)
134 KOG0112 Large RNA-binding prot 95.8 0.0027 5.9E-08 57.7 0.4 80 88-168 371-450 (975)
135 KOG4454 RNA binding protein (R 95.6 0.0053 1.1E-07 47.4 1.1 109 38-155 37-149 (267)
136 KOG2193 IGF-II mRNA-binding pr 95.3 0.0015 3.2E-08 54.9 -2.8 112 51-166 37-154 (584)
137 KOG4660 Protein Mei2, essentia 94.5 0.077 1.7E-06 46.2 5.2 82 89-170 388-474 (549)
138 KOG2253 U1 snRNP complex, subu 94.0 0.043 9.4E-07 48.7 2.7 73 84-165 35-107 (668)
139 PF07576 BRAP2: BRCA1-associat 93.8 1.6 3.4E-05 30.4 10.1 74 90-165 13-91 (110)
140 KOG4574 RNA-binding protein (c 93.8 0.043 9.3E-07 50.1 2.3 74 92-171 301-376 (1007)
141 KOG4285 Mitotic phosphoprotein 93.7 0.26 5.6E-06 40.0 6.5 64 89-160 197-260 (350)
142 PF03880 DbpA: DbpA RNA bindin 93.7 0.48 1E-05 30.3 6.6 67 91-166 2-74 (74)
143 KOG4210 Nuclear localization s 93.2 0.072 1.6E-06 43.4 2.7 81 88-168 87-167 (285)
144 COG0724 RNA-binding proteins ( 93.0 0.23 5E-06 38.6 5.2 93 46-139 152-275 (306)
145 KOG2591 c-Mpl binding protein, 92.2 0.32 7E-06 42.6 5.3 70 87-163 173-246 (684)
146 PF11767 SET_assoc: Histone ly 91.3 1.4 3E-05 27.7 6.2 55 100-163 11-65 (66)
147 KOG0804 Cytoplasmic Zn-finger 91.0 0.96 2.1E-05 38.8 6.8 69 88-158 73-142 (493)
148 KOG4208 Nucleolar RNA-binding 90.5 0.26 5.6E-06 37.9 2.8 66 39-119 84-151 (214)
149 KOG0122 Translation initiation 86.8 0.33 7.2E-06 38.3 1.2 57 15-76 199-255 (270)
150 KOG4410 5-formyltetrahydrofola 85.6 3.3 7.3E-05 33.6 6.3 47 89-141 330-377 (396)
151 KOG2318 Uncharacterized conser 85.6 4.2 9.1E-05 36.1 7.3 83 83-165 168-304 (650)
152 KOG0149 Predicted RNA-binding 84.4 0.55 1.2E-05 36.8 1.4 25 42-66 45-69 (247)
153 KOG4019 Calcineurin-mediated s 81.9 1.6 3.5E-05 33.0 2.9 75 91-171 12-92 (193)
154 smart00361 RRM_1 RNA recogniti 79.5 1.1 2.4E-05 28.0 1.3 28 48-76 34-61 (70)
155 KOG0125 Ataxin 2-binding prote 78.9 2.1 4.5E-05 35.4 2.9 32 47-79 132-163 (376)
156 PF15387 DUF4611: Domain of un 78.2 2.3 5.1E-05 28.3 2.5 16 6-21 63-79 (96)
157 KOG1999 RNA polymerase II tran 77.4 13 0.00027 35.3 7.7 27 131-157 210-236 (1024)
158 KOG4483 Uncharacterized conser 77.2 5.5 0.00012 33.9 5.0 56 88-150 390-446 (528)
159 PLN03134 glycine-rich RNA-bind 74.4 1 2.2E-05 32.8 0.1 38 30-72 59-96 (144)
160 KOG0113 U1 small nuclear ribon 73.2 2.7 5.9E-05 34.2 2.2 41 28-73 124-164 (335)
161 PF09026 CENP-B_dimeris: Centr 72.0 1.2 2.7E-05 29.9 0.0 13 28-40 39-51 (101)
162 PF10567 Nab6_mRNP_bdg: RNA-re 71.5 13 0.00029 30.3 5.7 80 88-167 14-106 (309)
163 PRK11634 ATP-dependent RNA hel 70.6 46 0.001 30.4 9.7 70 91-169 488-563 (629)
164 KOG0111 Cyclophilin-type pepti 64.2 3.5 7.5E-05 32.3 1.0 33 46-79 47-79 (298)
165 KOG4676 Splicing factor, argin 61.1 1.1 2.4E-05 37.8 -2.2 74 90-168 152-225 (479)
166 KOG0226 RNA-binding proteins [ 61.1 7.1 0.00015 31.2 2.3 29 46-75 227-255 (290)
167 KOG0126 Predicted RNA-binding 59.8 7.1 0.00015 29.7 2.0 27 30-60 60-86 (219)
168 PF03468 XS: XS domain; Inter 55.5 15 0.00033 25.7 3.0 55 91-148 10-74 (116)
169 PF15513 DUF4651: Domain of un 55.1 26 0.00057 21.6 3.6 19 104-122 9-27 (62)
170 KOG2295 C2H2 Zn-finger protein 52.4 2.1 4.5E-05 37.8 -2.1 73 89-161 231-303 (648)
171 KOG0108 mRNA cleavage and poly 51.9 17 0.00036 31.6 3.2 46 28-78 41-86 (435)
172 PF07530 PRE_C2HC: Associated 50.5 35 0.00076 21.4 3.8 61 105-168 3-64 (68)
173 KOG4365 Uncharacterized conser 49.0 2.9 6.4E-05 35.9 -1.7 78 90-168 4-81 (572)
174 PRK11901 hypothetical protein; 48.6 75 0.0016 26.5 6.4 64 87-155 243-308 (327)
175 PF07292 NID: Nmi/IFP 35 domai 45.0 50 0.0011 21.9 4.0 25 86-110 49-73 (88)
176 KOG1295 Nonsense-mediated deca 45.0 33 0.00071 29.1 3.8 67 89-156 7-77 (376)
177 KOG2891 Surface glycoprotein [ 41.6 20 0.00042 29.2 2.0 33 90-122 150-194 (445)
178 smart00596 PRE_C2HC PRE_C2HC d 38.3 56 0.0012 20.6 3.3 61 104-167 2-63 (69)
179 PF05764 YL1: YL1 nuclear prot 38.0 25 0.00054 27.9 2.1 10 3-12 36-45 (240)
180 KOG4008 rRNA processing protei 33.1 35 0.00077 27.0 2.1 34 85-118 36-69 (261)
181 PF03439 Spt5-NGN: Early trans 31.8 1.2E+02 0.0025 19.7 4.2 26 130-155 43-68 (84)
182 KOG4032 Uncharacterized conser 28.4 46 0.001 25.2 2.0 21 11-31 135-155 (184)
183 PF11411 DNA_ligase_IV: DNA li 26.4 47 0.001 18.1 1.3 16 99-114 19-34 (36)
184 KOG1631 Translocon-associated 26.3 55 0.0012 25.8 2.1 9 4-12 27-35 (261)
185 KOG4213 RNA-binding protein La 26.2 1E+02 0.0022 23.5 3.4 44 104-150 124-169 (205)
186 PF02714 DUF221: Domain of unk 26.1 88 0.0019 25.6 3.6 33 134-168 1-33 (325)
187 PF09707 Cas_Cas2CT1978: CRISP 25.7 1.7E+02 0.0038 19.3 4.2 46 91-139 27-72 (86)
188 PF11823 DUF3343: Protein of u 22.6 1.2E+02 0.0026 18.9 2.9 25 133-157 3-27 (73)
189 COG5638 Uncharacterized conser 21.7 2.2E+02 0.0049 24.7 5.0 41 82-122 139-184 (622)
190 PF04931 DNA_pol_phi: DNA poly 21.6 55 0.0012 30.7 1.6 8 105-112 740-747 (784)
191 KOG0156 Cytochrome P450 CYP2 s 20.4 2E+02 0.0043 25.5 4.7 59 93-161 36-97 (489)
No 1
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.92 E-value=6.5e-25 Score=153.84 Aligned_cols=136 Identities=60% Similarity=1.034 Sum_probs=123.0
Q ss_pred CcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCCCCCCCCCCCCCCCEEEEcCCCccCcHHHHHHhhccC
Q 043064 34 PQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEY 113 (196)
Q Consensus 34 ~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~ 113 (196)
.+..++. .++++||+||.+...+....+..-...........++|+.+..++.|||+++....|+++|.+.|..|
T Consensus 22 ~i~~~~e-----~Akk~kGRGf~~e~~sr~r~r~~yd~vee~~s~~~pgPqrSVEGwIi~VtgvHeEatEedi~d~F~dy 96 (170)
T KOG0130|consen 22 AIAGLKE-----KAKKRKGRGFGSEKDSRRRRRLSYDDVEEDGSDMRPGPQRSVEGWIIFVTGVHEEATEEDIHDKFADY 96 (170)
T ss_pred HHHHHHH-----HHHhhcCCCcccccchHHHhhhhhhhHhhcccccCCCCccceeeEEEEEeccCcchhHHHHHHHHhhc
Confidence 5677776 48899999999988777777766666666677778999999999999999999999999999999999
Q ss_pred CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccCCCCCC
Q 043064 114 GEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTG 174 (196)
Q Consensus 114 G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~~~~~~ 174 (196)
|+|+.+.+..++.||..+|||+|+|.+...|+.|+..+||..|.|++|.|.|++.+.+..+
T Consensus 97 GeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~gp~~g 157 (170)
T KOG0130|consen 97 GEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKGPERG 157 (170)
T ss_pred ccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecCCccC
Confidence 9999999999999999999999999999999999999999999999999999998887543
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.86 E-value=4e-21 Score=159.04 Aligned_cols=139 Identities=27% Similarity=0.337 Sum_probs=109.7
Q ss_pred CCCCCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCCCCCCC-------CCCCCCCCEEEEcCCCcc
Q 043064 28 SSSPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDGGPG-------PQRSIEGWIILVTGVHEE 100 (196)
Q Consensus 28 ~~~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~V~nLp~~ 100 (196)
...++..+..+++. .+++++||+||+|. ...++..+...++...+...+. .......++|||+|||+.
T Consensus 130 ~~G~V~~v~i~~d~----~tg~srGyaFVeF~-~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~ 204 (346)
T TIGR01659 130 TIGPINTCRIMRDY----KTGYSFGYAFVDFG-SEADSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 204 (346)
T ss_pred hcCCEEEEEEEecC----CCCccCcEEEEEEc-cHHHHHHHHHHcCCCccCCceeeeecccccccccccceeEEeCCCCc
Confidence 34455556666665 45689999999998 4444544555566554443322 112345678999999999
Q ss_pred CcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--cEeEEEEcccCCC
Q 043064 101 AQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLT--QTLTVDWAFSNGP 171 (196)
Q Consensus 101 ~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g--~~l~v~~a~~~~~ 171 (196)
+|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.||+..|.+ ++|+|.|+.....
T Consensus 205 vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 205 ITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred ccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 9999999999999999999999998899999999999999999999999999998865 7999999986544
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.86 E-value=2.2e-20 Score=136.74 Aligned_cols=87 Identities=21% Similarity=0.431 Sum_probs=81.6
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
....++|||+|||+.+++++|+++|.+||.|..|.|+.++.+++++|||||+|.+.++|+.||+.||+..|.|+.|+|.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 043064 166 AFSNGPS 172 (196)
Q Consensus 166 a~~~~~~ 172 (196)
+.+++..
T Consensus 111 a~~~~~~ 117 (144)
T PLN03134 111 ANDRPSA 117 (144)
T ss_pred CCcCCCC
Confidence 9876653
No 4
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.5e-19 Score=140.26 Aligned_cols=133 Identities=22% Similarity=0.302 Sum_probs=110.1
Q ss_pred CCCCCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCCCCCCC-----------------------CC
Q 043064 28 SSSPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDGGPG-----------------------PQ 84 (196)
Q Consensus 28 ~~~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~ 84 (196)
.-+.+...+.+|+. .+.++||||||+|.....+ +-+...+++.++..+.. -+
T Consensus 85 pFGevS~akvirD~----~T~KsKGYgFVSf~~k~dA-EnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQ 159 (321)
T KOG0148|consen 85 PFGEVSDAKVIRDM----NTGKSKGYGFVSFPNKEDA-ENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQ 159 (321)
T ss_pred cccccccceEeecc----cCCcccceeEEeccchHHH-HHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhcc
Confidence 33445567778887 7789999999999954444 44556777766654321 13
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
.+.+.++|||+||+..+|++.|+..|+.||.|.+|++.++ +||+||.|.+++.|..||..+||.+|.|+.+++.
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 4567899999999999999999999999999999999887 7999999999999999999999999999999999
Q ss_pred EcccCCC
Q 043064 165 WAFSNGP 171 (196)
Q Consensus 165 ~a~~~~~ 171 (196)
|.+....
T Consensus 234 WGKe~~~ 240 (321)
T KOG0148|consen 234 WGKEGDD 240 (321)
T ss_pred ccccCCC
Confidence 9876553
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.81 E-value=4.7e-19 Score=147.44 Aligned_cols=82 Identities=28% Similarity=0.488 Sum_probs=78.5
Q ss_pred CEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccC
Q 043064 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSN 169 (196)
Q Consensus 90 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~ 169 (196)
.+|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|+|+.|+|.|+.++
T Consensus 270 ~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 270 YCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence 46999999999999999999999999999999999889999999999999999999999999999999999999999877
Q ss_pred CC
Q 043064 170 GP 171 (196)
Q Consensus 170 ~~ 171 (196)
..
T Consensus 350 ~~ 351 (352)
T TIGR01661 350 AY 351 (352)
T ss_pred CC
Confidence 53
No 6
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.81 E-value=2.2e-19 Score=156.60 Aligned_cols=139 Identities=27% Similarity=0.282 Sum_probs=108.3
Q ss_pred CCCCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCCCCCCC--------C----------CCCCCCC
Q 043064 29 SSPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDGGPG--------P----------QRSIEGW 90 (196)
Q Consensus 29 ~~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~----------~~~~~~~ 90 (196)
.++...+..+++. .+++++|||||+|.+ ...+..+...+++....+... + ......+
T Consensus 131 fG~I~sV~I~~D~----~TgkskGfAFVeF~s-~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~ 205 (612)
T TIGR01645 131 FGPIKSINMSWDP----ATGKHKGFAFVEYEV-PEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFN 205 (612)
T ss_pred cCCEEEEEEeecC----CCCCcCCeEEEEeCc-HHHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccc
Confidence 3455556666665 455899999999995 444444444444432222110 0 0112357
Q ss_pred EEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccCC
Q 043064 91 IILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNG 170 (196)
Q Consensus 91 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~~ 170 (196)
+|||+|||+.+++++|+.+|+.||.|.+|.|..++.+++++|||||+|.+.++|..||..||+..|+|+.|+|.++.+.+
T Consensus 206 rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 206 RIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred eEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 89999999999999999999999999999999998889999999999999999999999999999999999999998755
Q ss_pred CC
Q 043064 171 PS 172 (196)
Q Consensus 171 ~~ 172 (196)
..
T Consensus 286 ~~ 287 (612)
T TIGR01645 286 DA 287 (612)
T ss_pred cc
Confidence 43
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.75 E-value=1.8e-17 Score=142.52 Aligned_cols=129 Identities=26% Similarity=0.410 Sum_probs=99.8
Q ss_pred CCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCCCCCC-------------------CCCCCCCCCEEE
Q 043064 33 APQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDGGP-------------------GPQRSIEGWIIL 93 (196)
Q Consensus 33 ~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~l~ 93 (196)
..+..+++. .+++++|||||+|.+.+.+.... .+++....+.+ .+......++||
T Consensus 117 ~~v~i~~d~----~~~~skg~afVeF~~~e~A~~Al--~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~ 190 (457)
T TIGR01622 117 RDVQCIKDR----NSRRSKGVAYVEFYDVESVIKAL--ALTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLY 190 (457)
T ss_pred eEEEEeecC----CCCCcceEEEEEECCHHHHHHHH--HhCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEE
Confidence 344445544 45678999999999655444432 22322211110 001112258899
Q ss_pred EcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 94 VTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 94 V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
|+|||..+++++|+.+|++||.|..|.|+.+..+|+++|||||+|.+.++|..|+..|||..|.|+.|.|.|+.
T Consensus 191 v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 191 VGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred EcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999976
No 8
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.75 E-value=2e-18 Score=127.00 Aligned_cols=140 Identities=27% Similarity=0.395 Sum_probs=118.7
Q ss_pred CCCCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCCCCCCCC--------CCCCCCCEEEEcCCCcc
Q 043064 29 SSPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDGGPGP--------QRSIEGWIILVTGVHEE 100 (196)
Q Consensus 29 ~~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~V~nLp~~ 100 (196)
++|+..+...|+..+ ...+||||++|. ++.++.|+...++.+.+.+.+.. ....-+..|||+||.+.
T Consensus 33 agpVv~i~iPkDrv~----~~~qGygF~Ef~-~eedadYAikiln~VkLYgrpIrv~kas~~~~nl~vganlfvgNLd~~ 107 (203)
T KOG0131|consen 33 AGPVVNLHIPKDRVT----QKHQGYGFAEFR-TEEDADYAIKILNMVKLYGRPIRVNKASAHQKNLDVGANLFVGNLDPE 107 (203)
T ss_pred cCceeeeecchhhhc----ccccceeEEEEe-chhhhHHHHHHHHHHHhcCceeEEEecccccccccccccccccccCcc
Confidence 466777677777644 378999999999 88899999988887777765432 22334688999999999
Q ss_pred CcHHHHHHhhccCCCeeE-EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccCCCCC
Q 043064 101 AQEDDLQNVFGEYGEIRN-LHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPST 173 (196)
Q Consensus 101 ~te~~L~~~F~~~G~i~~-v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~~~~~ 173 (196)
+++..|.+.|+.||.|.. ..++++..||.++||+||.|.+.+.+.+|+..+||..+..++|+|.|++.+..++
T Consensus 108 vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 108 VDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred hhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 999999999999999876 4778888899999999999999999999999999999999999999999887654
No 9
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.73 E-value=1.5e-17 Score=124.73 Aligned_cols=89 Identities=27% Similarity=0.431 Sum_probs=81.9
Q ss_pred CCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeE
Q 043064 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLT 162 (196)
Q Consensus 83 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~ 162 (196)
|+.......|-|-||...++.++|+.+|.+||.|-+|.|+.++.|..++|||||.|....+|+.|+..|+|.+|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 44555568899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCCC
Q 043064 163 VDWAFSNGP 171 (196)
Q Consensus 163 v~~a~~~~~ 171 (196)
|++|+-...
T Consensus 87 Vq~arygr~ 95 (256)
T KOG4207|consen 87 VQMARYGRP 95 (256)
T ss_pred ehhhhcCCC
Confidence 998875443
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.72 E-value=4.7e-17 Score=134.84 Aligned_cols=87 Identities=23% Similarity=0.412 Sum_probs=81.4
Q ss_pred CCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeE
Q 043064 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLT 162 (196)
Q Consensus 83 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~ 162 (196)
.......++|||+|||+++|+++|+++|+.||.|+.|.|+.++.+++++|||||+|.+.++|++||+.|++..|.+++|+
T Consensus 101 ~~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~ 180 (346)
T TIGR01659 101 NDTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLK 180 (346)
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceee
Confidence 34555689999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEEcccC
Q 043064 163 VDWAFSN 169 (196)
Q Consensus 163 v~~a~~~ 169 (196)
|.|+.+.
T Consensus 181 V~~a~p~ 187 (346)
T TIGR01659 181 VSYARPG 187 (346)
T ss_pred eeccccc
Confidence 9998764
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.72 E-value=1.2e-16 Score=139.20 Aligned_cols=117 Identities=23% Similarity=0.365 Sum_probs=89.2
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhccc--CCCCCC--------C----CCCCCCCCCEEEEcCCCccCcHHHHHHhhcc
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFES--LGTDGG--------P----GPQRSIEGWIILVTGVHEEAQEDDLQNVFGE 112 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~--~~~~~~--------~----~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~ 112 (196)
..+++||+||.|.+...+ ..+...+.. +...+. + ........++|||+||++.+++++|+++|++
T Consensus 178 kgKnRGFAFVeF~s~edA-a~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~ 256 (578)
T TIGR01648 178 KKKNRGFAFVEYESHRAA-AMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSE 256 (578)
T ss_pred cCccCceEEEEcCCHHHH-HHHHHHhhccceEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHh
Confidence 346899999999954444 333332221 111110 1 1111234578999999999999999999999
Q ss_pred C--CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccCCCC
Q 043064 113 Y--GEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPS 172 (196)
Q Consensus 113 ~--G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~~~~ 172 (196)
| |.|+.|.++ ++||||+|.+.++|++|++.||+..|.|+.|+|.|++|....
T Consensus 257 f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 257 FKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred cCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcc
Confidence 9 999999775 469999999999999999999999999999999999886543
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.72 E-value=8.1e-17 Score=140.20 Aligned_cols=83 Identities=27% Similarity=0.398 Sum_probs=78.2
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
..++|||+|||..+++++|+++|..||.|..+.|+.+..+|.++|||||+|.+.+.|..||..|||..|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 35789999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred cCC
Q 043064 168 SNG 170 (196)
Q Consensus 168 ~~~ 170 (196)
...
T Consensus 374 ~~~ 376 (509)
T TIGR01642 374 VGA 376 (509)
T ss_pred cCC
Confidence 543
No 13
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.71 E-value=1.1e-16 Score=133.25 Aligned_cols=138 Identities=22% Similarity=0.346 Sum_probs=107.6
Q ss_pred CCCCCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCCCCCCC-------CCCCCCCCEEEEcCCCcc
Q 043064 28 SSSPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDGGPG-------PQRSIEGWIILVTGVHEE 100 (196)
Q Consensus 28 ~~~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~V~nLp~~ 100 (196)
..+++..+..++++ .+++++|||||.|.+. .++..+...++.....+... ........+|||+|||..
T Consensus 26 ~~G~i~~v~i~~d~----~~g~s~g~afV~f~~~-~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~~~~~~l~v~~l~~~ 100 (352)
T TIGR01661 26 SIGEIESCKLVRDK----VTGQSLGYGFVNYVRP-EDAEKAVNSLNGLRLQNKTIKVSYARPSSDSIKGANLYVSGLPKT 100 (352)
T ss_pred ccCCEEEEEEEEcC----CCCccceEEEEEECcH-HHHHHHHhhcccEEECCeeEEEEeecccccccccceEEECCcccc
Confidence 44566667777776 3457999999999954 44444444555544433211 122345678999999999
Q ss_pred CcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--cEeEEEEcccCC
Q 043064 101 AQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLT--QTLTVDWAFSNG 170 (196)
Q Consensus 101 ~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g--~~l~v~~a~~~~ 170 (196)
+++++|+.+|.+||.|..+.++.+..++.++|||||+|.+.++|+.||..|||..+.| .+|.|.|+....
T Consensus 101 ~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 101 MTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred CCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 9999999999999999999999888788999999999999999999999999999877 578888886544
No 14
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=4.3e-17 Score=125.02 Aligned_cols=83 Identities=31% Similarity=0.564 Sum_probs=80.1
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEc
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a 166 (196)
.+..+|-|+||+.++++.+|.+||..||.|..|.|.+++.||.++|||||.|.+.++|.+||..|||+-+++-.|+|.|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 043064 167 FSN 169 (196)
Q Consensus 167 ~~~ 169 (196)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 886
No 15
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.70 E-value=1.3e-16 Score=102.08 Aligned_cols=70 Identities=26% Similarity=0.601 Sum_probs=67.0
Q ss_pred EEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeE
Q 043064 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLT 162 (196)
Q Consensus 92 l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~ 162 (196)
|||+|||+++|+.+|+++|++||.|..+.+..+ .++..+++|||+|.+.++|+.|+..|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999887 6888999999999999999999999999999999885
No 16
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.70 E-value=1.8e-16 Score=139.75 Aligned_cols=122 Identities=24% Similarity=0.396 Sum_probs=97.5
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcccCCCC----CCC-----C--------------------CCCCCCCCEEEEcCC
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFESLGTD----GGP-----G--------------------PQRSIEGWIILVTGV 97 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~--------------------~~~~~~~~~l~V~nL 97 (196)
..+++|||||.|.+.+.+.+ +...++..... +.. . ......+.+|||+||
T Consensus 215 ~g~~~G~afV~F~~~e~A~~-Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl 293 (562)
T TIGR01628 215 SGRSRGFAFVNFEKHEDAAK-AVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNL 293 (562)
T ss_pred CCCcccEEEEEECCHHHHHH-HHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCC
Confidence 45789999999995544433 33344433332 110 0 001234678999999
Q ss_pred CccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccCC
Q 043064 98 HEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNG 170 (196)
Q Consensus 98 p~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~~ 170 (196)
++.+++++|+++|+.||.|.+|.++.+ .+|.++|||||+|.+.++|.+|+..||+..|+|++|.|.||..+.
T Consensus 294 ~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 294 DDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred CCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 999999999999999999999999998 689999999999999999999999999999999999999988653
No 17
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=2.1e-16 Score=115.71 Aligned_cols=78 Identities=19% Similarity=0.456 Sum_probs=72.6
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEccc
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~ 168 (196)
.++|||+||+..+++.+|+.+|..||+|..|+|-..+ .|||||+|.++.+|+.|+..|+|..|.|..|+|++..-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 6789999999999999999999999999999987655 89999999999999999999999999999999999876
Q ss_pred CCC
Q 043064 169 NGP 171 (196)
Q Consensus 169 ~~~ 171 (196)
.+.
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 554
No 18
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=9.8e-17 Score=132.13 Aligned_cols=117 Identities=24% Similarity=0.378 Sum_probs=92.4
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcccCCC----CC----------CCCCCCCCCCCEEEEcCCCccCcHHHHHHhhcc
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFESLGT----DG----------GPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGE 112 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~----~~----------~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~ 112 (196)
..+++||+||+|. ....+.++...+-.... .. .+........+.|||+||+.++|++.|+++|.+
T Consensus 204 k~KNRGFaFveYe-~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~ 282 (506)
T KOG0117|consen 204 KTKNRGFAFVEYE-SHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNE 282 (506)
T ss_pred cccccceEEEEee-cchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHh
Confidence 5588999999999 45555555544332211 11 111122334689999999999999999999999
Q ss_pred CCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccCCCC
Q 043064 113 YGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPS 172 (196)
Q Consensus 113 ~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~~~~ 172 (196)
||.|..|..++| ||||+|.+.++|.+|++.+|++.|+|..|.|.+|+|....
T Consensus 283 ~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 283 FGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred ccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 999999987744 9999999999999999999999999999999999886543
No 19
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=7.9e-17 Score=132.19 Aligned_cols=142 Identities=22% Similarity=0.321 Sum_probs=110.3
Q ss_pred CCCCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCCCCCCCC-------C---CCCCCCEEEEcCCC
Q 043064 29 SSPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDGGPGP-------Q---RSIEGWIILVTGVH 98 (196)
Q Consensus 29 ~~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~l~V~nLp 98 (196)
-.-+..+-.+|+++++ .++|++||.|.....+.+......+.....+...| . .....++|||+.|+
T Consensus 58 yg~V~einl~kDk~t~----~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~ls 133 (510)
T KOG0144|consen 58 YGNVYEINLIKDKSTG----QSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERIVEERKLFVGMLS 133 (510)
T ss_pred hCceeEEEeecccccC----cccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhccccchhhhhhhcc
Confidence 3446678889999665 79999999999555544433333333333332222 1 12236789999999
Q ss_pred ccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCce-eCC--cEeEEEEcccCCCCCCC
Q 043064 99 EEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGE-LLT--QTLTVDWAFSNGPSTGP 175 (196)
Q Consensus 99 ~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~-l~g--~~l~v~~a~~~~~~~~~ 175 (196)
+.+||.+++++|++||.|++|.|+++ ..+.+||||||.|.+.+.|..||+.||+.. +.| .+|.|.||.++.++...
T Consensus 134 K~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~ 212 (510)
T KOG0144|consen 134 KQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGK 212 (510)
T ss_pred ccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHH
Confidence 99999999999999999999999998 488999999999999999999999999974 665 68999999998876443
No 20
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=1.2e-16 Score=123.80 Aligned_cols=135 Identities=22% Similarity=0.376 Sum_probs=110.2
Q ss_pred CCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCCCCC-------CCCCCCCCCCEEEEcCCCccCcH
Q 043064 31 PRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDGG-------PGPQRSIEGWIILVTGVHEEAQE 103 (196)
Q Consensus 31 ~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~V~nLp~~~te 103 (196)
...+.+.+|++++| .+-|||||.|.+ ..++..+...++++.+... ...........|||++||+.+|.
T Consensus 67 eiEScKLvRDKitG----qSLGYGFVNYv~-p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtq 141 (360)
T KOG0145|consen 67 EIESCKLVRDKITG----QSLGYGFVNYVR-PKDAEKAINTLNGLRLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQ 141 (360)
T ss_pred ceeeeeeeeccccc----cccccceeeecC-hHHHHHHHhhhcceeeccceEEEEeccCChhhhcccceEEecCCccchH
Confidence 34467778888765 688999999994 5555555667777655432 22334566788999999999999
Q ss_pred HHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--cEeEEEEcccCC
Q 043064 104 DDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLT--QTLTVDWAFSNG 170 (196)
Q Consensus 104 ~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g--~~l~v~~a~~~~ 170 (196)
.+|+.+|++||.|..-+|+.+..+|.++|.+||.|....+|+.||+.|||..-.| .+|.|.||....
T Consensus 142 kelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 142 KELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPS 210 (360)
T ss_pred HHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcc
Confidence 9999999999999988999998999999999999999999999999999998655 589999986443
No 21
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=2.5e-16 Score=109.80 Aligned_cols=82 Identities=22% Similarity=0.465 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEc
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a 166 (196)
..+++|||+||+..++|++|.++|+++|+|..|.|-.++.+..+.|||||+|.+.++|+.|++-++++.|+.++|++.|-
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 45789999999999999999999999999999999999989999999999999999999999999999999999999986
Q ss_pred cc
Q 043064 167 FS 168 (196)
Q Consensus 167 ~~ 168 (196)
..
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 43
No 22
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.66 E-value=6.3e-16 Score=136.27 Aligned_cols=136 Identities=21% Similarity=0.309 Sum_probs=104.6
Q ss_pred CCCCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCCCCCCC--------C-CCCCCCCEEEEcCCCc
Q 043064 29 SSPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDGGPG--------P-QRSIEGWIILVTGVHE 99 (196)
Q Consensus 29 ~~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~l~V~nLp~ 99 (196)
.+++..+..+++. .+++++|||||.|.+...+.+ +...++.....+.+. + .......+|||+|||.
T Consensus 24 ~G~v~~v~v~~d~----~t~~s~G~afV~F~~~~~A~~-Al~~ln~~~i~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~ 98 (562)
T TIGR01628 24 FGPVLSVRVCRDS----VTRRSLGYGYVNFQNPADAER-ALETMNFKRLGGKPIRIMWSQRDPSLRRSGVGNIFVKNLDK 98 (562)
T ss_pred cCCEEEEEEEecC----CCCCcceEEEEEECCHHHHHH-HHHHhCCCEECCeeEEeecccccccccccCCCceEEcCCCc
Confidence 3455677777776 446899999999995444444 444444332222211 1 1122346799999999
Q ss_pred cCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccCC
Q 043064 100 EAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNG 170 (196)
Q Consensus 100 ~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~~ 170 (196)
++++++|+++|+.||.|..|.++.+ .+|+++|||||+|.+.++|..|+..|||..+.++.|.|....++.
T Consensus 99 ~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~ 168 (562)
T TIGR01628 99 SVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKH 168 (562)
T ss_pred cCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccccc
Confidence 9999999999999999999999887 488899999999999999999999999999999999998765543
No 23
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=1.1e-15 Score=128.76 Aligned_cols=83 Identities=22% Similarity=0.580 Sum_probs=76.7
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
+.++|.|.|||+.+...+|+.+|+.||.|..|.|+..+ .|+.+|||||+|....+|..||+.+|+..|+|++|-|.||-
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 36889999999999999999999999999999999664 56667999999999999999999999999999999999998
Q ss_pred cCCC
Q 043064 168 SNGP 171 (196)
Q Consensus 168 ~~~~ 171 (196)
++..
T Consensus 195 ~Kd~ 198 (678)
T KOG0127|consen 195 DKDT 198 (678)
T ss_pred cccc
Confidence 8764
No 24
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=4.5e-15 Score=116.93 Aligned_cols=89 Identities=26% Similarity=0.351 Sum_probs=82.5
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
..+-+||||+.|+.+++|..|+..|..||+|+.|.|+.++.||+++|||||+|.+..+...|.+..+|..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCCCCCC
Q 043064 166 AFSNGPSTG 174 (196)
Q Consensus 166 a~~~~~~~~ 174 (196)
-....-++|
T Consensus 178 ERgRTvkgW 186 (335)
T KOG0113|consen 178 ERGRTVKGW 186 (335)
T ss_pred ccccccccc
Confidence 766555444
No 25
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.63 E-value=4.6e-15 Score=95.30 Aligned_cols=70 Identities=26% Similarity=0.586 Sum_probs=64.6
Q ss_pred EEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeE
Q 043064 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLT 162 (196)
Q Consensus 92 l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~ 162 (196)
|||+|||+++++++|.++|+.||.|..+.+..++. +..+++|||+|.+.++|..|+..+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999875 89999999999999999999999999999999874
No 26
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=2e-15 Score=115.41 Aligned_cols=83 Identities=23% Similarity=0.305 Sum_probs=75.0
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
....-++|||++|+|.+..+.|+++|.+||+|.+..++.|+.+|+++||+||+|.+.++|++|++- .+..|+|++..|.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 344568899999999999999999999999999999999999999999999999999999999963 6678999998887
Q ss_pred Eccc
Q 043064 165 WAFS 168 (196)
Q Consensus 165 ~a~~ 168 (196)
+|.-
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 7643
No 27
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.60 E-value=8.5e-15 Score=115.12 Aligned_cols=77 Identities=19% Similarity=0.324 Sum_probs=70.8
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEccc
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~ 168 (196)
.++|||+|||+.+++.+|+++|+.||.|.+|.|+.+.. .+|||||+|.+.++|+.||. |+|..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57899999999999999999999999999999987753 46899999999999999995 999999999999999864
Q ss_pred C
Q 043064 169 N 169 (196)
Q Consensus 169 ~ 169 (196)
-
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 28
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=4.7e-15 Score=122.31 Aligned_cols=151 Identities=16% Similarity=0.227 Sum_probs=112.4
Q ss_pred CcCCccCCCCCCCCCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCCCCCC--CCCCCCCCCEEEEc
Q 043064 18 DEDGTADVDASSSPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDGGP--GPQRSIEGWIILVT 95 (196)
Q Consensus 18 ded~~~~~d~~~~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~V~ 95 (196)
.||+....-+..++.-.++.+.++++| .+|||+||.|.+.+. +..+...++...+..+. +-.-+...++|||+
T Consensus 96 ~EdeLvplfEkiG~I~elRLMmD~~sG----~nRGYAFVtf~~Ke~-Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG 170 (506)
T KOG0117|consen 96 FEDELVPLFEKIGKIYELRLMMDPFSG----DNRGYAFVTFCTKEE-AQEAIKELNNYEIRPGKLLGVCVSVANCRLFIG 170 (506)
T ss_pred cchhhHHHHHhccceeeEEEeecccCC----CCcceEEEEeecHHH-HHHHHHHhhCccccCCCEeEEEEeeecceeEec
Confidence 344445555566677778888888665 789999999995444 44455677776554322 22346678999999
Q ss_pred CCCccCcHHHHHHhhccCCC-eeEEEEeecC-CCCCcceEEEEEecCHHHHHHHHHHhCC--ceeCCcEeEEEEcccCCC
Q 043064 96 GVHEEAQEDDLQNVFGEYGE-IRNLHLNLDR-RTGFVKGYALIEYENFEEAQNAITAMNG--GELLTQTLTVDWAFSNGP 171 (196)
Q Consensus 96 nLp~~~te~~L~~~F~~~G~-i~~v~i~~~~-~~g~~~g~afv~f~~~~~a~~al~~l~~--~~l~g~~l~v~~a~~~~~ 171 (196)
|||++.++++|.+.|++.++ |..|.+.... ...+++|||||+|.++..|..|-..|-. ..|-|..+.|.||.|...
T Consensus 171 ~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e 250 (506)
T KOG0117|consen 171 NIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEE 250 (506)
T ss_pred cCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccC
Confidence 99999999999999999865 5566554443 3468999999999999999999877643 347899999999998775
Q ss_pred CC
Q 043064 172 ST 173 (196)
Q Consensus 172 ~~ 173 (196)
..
T Consensus 251 ~d 252 (506)
T KOG0117|consen 251 PD 252 (506)
T ss_pred CC
Confidence 43
No 29
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.59 E-value=6.2e-15 Score=128.97 Aligned_cols=81 Identities=31% Similarity=0.449 Sum_probs=76.9
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
..++|||+|||+.+++++|+++|.+||.|.+|.|+.++.+++++|||||+|.+.++|++|++.|||..|.|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred c
Q 043064 168 S 168 (196)
Q Consensus 168 ~ 168 (196)
.
T Consensus 186 ~ 186 (612)
T TIGR01645 186 N 186 (612)
T ss_pred c
Confidence 3
No 30
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=4.5e-14 Score=109.61 Aligned_cols=84 Identities=30% Similarity=0.518 Sum_probs=79.4
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEc
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a 166 (196)
..++.|||-||.++..|..|+.+|+.||.|..|++++|..+.+.+||+||...+-++|..||..|||+.++++.|.|.|.
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 34789999999999999999999999999999999999988999999999999999999999999999999999999997
Q ss_pred ccCC
Q 043064 167 FSNG 170 (196)
Q Consensus 167 ~~~~ 170 (196)
..+.
T Consensus 356 tnk~ 359 (360)
T KOG0145|consen 356 TNKA 359 (360)
T ss_pred cCCC
Confidence 6654
No 31
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=1.6e-14 Score=106.96 Aligned_cols=80 Identities=23% Similarity=0.382 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
..++|||+|||.++.+.+|.++|.+||.|..|.|... -....||||+|++..+|+.||..-+|+.++|+.|+|+|+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4678999999999999999999999999999987532 2236799999999999999999999999999999999987
Q ss_pred cCC
Q 043064 168 SNG 170 (196)
Q Consensus 168 ~~~ 170 (196)
.-.
T Consensus 82 ggr 84 (241)
T KOG0105|consen 82 GGR 84 (241)
T ss_pred CCC
Confidence 654
No 32
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=6.7e-16 Score=113.79 Aligned_cols=83 Identities=33% Similarity=0.511 Sum_probs=77.9
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
.-.++..|||+|||..+||.+|.-+|++||+|..|.+++++.||+++||||+.|.+..+-..|+..|||..|.|+.|+|.
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred Ecc
Q 043064 165 WAF 167 (196)
Q Consensus 165 ~a~ 167 (196)
...
T Consensus 111 Hv~ 113 (219)
T KOG0126|consen 111 HVS 113 (219)
T ss_pred ecc
Confidence 644
No 33
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.56 E-value=1.4e-14 Score=126.44 Aligned_cols=139 Identities=16% Similarity=0.258 Sum_probs=100.0
Q ss_pred CCCCCCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCCCC-C-CCCCCCCCCCEEEEcCCCccCcHH
Q 043064 27 ASSSPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDG-G-PGPQRSIEGWIILVTGVHEEAQED 104 (196)
Q Consensus 27 ~~~~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~V~nLp~~~te~ 104 (196)
....++..+..+++ .+++++||+||.|. ..+++..+...++...... . .....+...++|||+|||+.++++
T Consensus 80 ~~~G~I~~vrl~~D-----~sG~sRGfaFV~F~-~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~~~rLFVgNLP~~~Tee 153 (578)
T TIGR01648 80 EKAGPIYELRLMMD-----FSGQNRGYAFVTFC-GKEEAKEAVKLLNNYEIRPGRLLGVCISVDNCRLFVGGIPKNKKRE 153 (578)
T ss_pred HhhCCEEEEEEEEC-----CCCCccceEEEEeC-CHHHHHHHHHHcCCCeecCCccccccccccCceeEeecCCcchhhH
Confidence 34455555655566 25589999999999 4555554555666544421 1 112234557899999999999999
Q ss_pred HHHHhhccCCC-eeEEEE-eecCCCCCcceEEEEEecCHHHHHHHHHHhCC--ceeCCcEeEEEEcccCCC
Q 043064 105 DLQNVFGEYGE-IRNLHL-NLDRRTGFVKGYALIEYENFEEAQNAITAMNG--GELLTQTLTVDWAFSNGP 171 (196)
Q Consensus 105 ~L~~~F~~~G~-i~~v~i-~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~--~~l~g~~l~v~~a~~~~~ 171 (196)
+|.++|++++. +..+.+ ......++++|||||+|.++++|..|+..|+. ..|.|+.|.|.|+.+...
T Consensus 154 eL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~ 224 (578)
T TIGR01648 154 EILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEE 224 (578)
T ss_pred HHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccc
Confidence 99999999864 344333 23334567899999999999999999988764 358899999999987653
No 34
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=4.7e-15 Score=112.46 Aligned_cols=92 Identities=27% Similarity=0.465 Sum_probs=84.9
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
.....++|||++|...+++.-|...|-.||.|..|.++.+..+++++||+||+|...++|..||..||...|-|+.|+|.
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCCCCCCCC
Q 043064 165 WAFSNGPSTGPF 176 (196)
Q Consensus 165 ~a~~~~~~~~~~ 176 (196)
||+|..-..+++
T Consensus 86 ~AkP~kikegsq 97 (298)
T KOG0111|consen 86 LAKPEKIKEGSQ 97 (298)
T ss_pred ecCCccccCCCC
Confidence 999877654443
No 35
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=3.3e-14 Score=115.01 Aligned_cols=135 Identities=27% Similarity=0.275 Sum_probs=110.2
Q ss_pred CCCCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCCCCCCCC---C---------------CCCCCC
Q 043064 29 SSPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDGGPGP---Q---------------RSIEGW 90 (196)
Q Consensus 29 ~~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---------------~~~~~~ 90 (196)
.+|..++.-.=++ .+.++|||+||+|+ ....+.++...+++.-..++..+ + ....-.
T Consensus 137 FGPIKSInMSWDp----~T~kHKgFAFVEYE-vPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fn 211 (544)
T KOG0124|consen 137 FGPIKSINMSWDP----ATGKHKGFAFVEYE-VPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFN 211 (544)
T ss_pred CCCcceeeccccc----ccccccceEEEEEe-CcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhh
Confidence 3444444444455 45699999999999 77777788888887665553221 1 122357
Q ss_pred EEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEccc
Q 043064 91 IILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168 (196)
Q Consensus 91 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~ 168 (196)
+|||..+++++++.+|+..|..||+|..|.+-+.+..+.++||+||+|.+......|+..||-+.|+|+.|+|..+-.
T Consensus 212 RiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 212 RIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred eEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 899999999999999999999999999999999988889999999999999999999999999999999999976543
No 36
>PLN03213 repressor of silencing 3; Provisional
Probab=99.55 E-value=2e-14 Score=120.15 Aligned_cols=78 Identities=22% Similarity=0.373 Sum_probs=71.7
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCH--HHHHHHHHHhCCceeCCcEeEEEE
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENF--EEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~--~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
...+|||+||++.+++++|..+|+.||.|..|.|+ +.+| +|||||+|.+. .++.+||..|||..+.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 45789999999999999999999999999999998 4577 89999999987 789999999999999999999998
Q ss_pred cccC
Q 043064 166 AFSN 169 (196)
Q Consensus 166 a~~~ 169 (196)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 8664
No 37
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=7.4e-14 Score=116.58 Aligned_cols=135 Identities=21% Similarity=0.299 Sum_probs=108.4
Q ss_pred CCCCCCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCCCCCCCC--CCCCCCCEEEEcCCCccCcHH
Q 043064 27 ASSSPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDGGPGP--QRSIEGWIILVTGVHEEAQED 104 (196)
Q Consensus 27 ~~~~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~V~nLp~~~te~ 104 (196)
..++++++++.+|+. | +-||||+.|.+...+.+ +...++-....+.+.. ....+...|||.||++.++..
T Consensus 20 ~~~~~v~s~rvc~d~-t------slgy~yvnf~~~~da~~-A~~~~n~~~~~~~~~rim~s~rd~~~~~i~nl~~~~~~~ 91 (369)
T KOG0123|consen 20 SPAGPVLSIRVCRDA-T------SLGYAYVNFQQPADAER-ALDTMNFDVLKGKPIRIMWSQRDPSLVFIKNLDESIDNK 91 (369)
T ss_pred cccCCceeEEEeecC-C------ccceEEEecCCHHHHHH-HHHHcCCcccCCcEEEeehhccCCceeeecCCCcccCcH
Confidence 356788999999996 3 88999999995555444 4456666555554321 112223339999999999999
Q ss_pred HHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccCCCC
Q 043064 105 DLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPS 172 (196)
Q Consensus 105 ~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~~~~ 172 (196)
.|.++|+.||+|.+|.+..+. +| ++|| ||+|.+.+.|.+|+..+||..+.++.|.|.....+..+
T Consensus 92 ~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 92 SLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred HHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 999999999999999999884 66 7999 99999999999999999999999999999888776543
No 38
>smart00362 RRM_2 RNA recognition motif.
Probab=99.53 E-value=8.5e-14 Score=88.40 Aligned_cols=72 Identities=33% Similarity=0.640 Sum_probs=66.5
Q ss_pred EEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 91 IILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 91 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
+|||+|||..++..+|+.+|.+||.|..+.+..+. +.++++|||+|.+.+.|+.|+..+++..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999888764 6778999999999999999999999999999998873
No 39
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=4.5e-14 Score=112.62 Aligned_cols=81 Identities=17% Similarity=0.304 Sum_probs=74.4
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEccc
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~ 168 (196)
.++|+|+|||+...+.||+.+|.+||.|.+|.|+.+- - -++||+||+|.+.++|++|-..|||..|.|++|.|..|..
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE-R-GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE-R-GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEecc-C-CCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 5789999999999999999999999999999999762 3 3589999999999999999999999999999999999887
Q ss_pred CCC
Q 043064 169 NGP 171 (196)
Q Consensus 169 ~~~ 171 (196)
+-.
T Consensus 174 rV~ 176 (376)
T KOG0125|consen 174 RVH 176 (376)
T ss_pred hhc
Confidence 654
No 40
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.51 E-value=1.1e-13 Score=119.13 Aligned_cols=83 Identities=24% Similarity=0.392 Sum_probs=77.1
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
..+.++|||+|||..+++.+|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+||. |+|..|.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 4457899999999999999999999999999999999999899999999999999999999995 899999999999998
Q ss_pred cccC
Q 043064 166 AFSN 169 (196)
Q Consensus 166 a~~~ 169 (196)
+...
T Consensus 165 ~~~~ 168 (457)
T TIGR01622 165 SQAE 168 (457)
T ss_pred cchh
Confidence 7543
No 41
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.51 E-value=1.3e-13 Score=106.92 Aligned_cols=76 Identities=17% Similarity=0.281 Sum_probs=68.9
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
.+++|||+||++.+|+.+|+++|+.||.|.+|.|+.+. ...+||||+|.+.+.++.|+ .|+|..|.+++|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 46899999999999999999999999999999999774 33579999999999999999 699999999999997643
No 42
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=8.1e-14 Score=108.62 Aligned_cols=86 Identities=30% Similarity=0.526 Sum_probs=81.4
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
.......+||+-|.+.++-+.|++.|.+||+|.++++++|..|++++||+||.|.+.++|+.||..|||.-|+++.|+-.
T Consensus 58 t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTN 137 (321)
T KOG0148|consen 58 TSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTN 137 (321)
T ss_pred ccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecc
Confidence 33446779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCC
Q 043064 165 WAFSNG 170 (196)
Q Consensus 165 ~a~~~~ 170 (196)
||..++
T Consensus 138 WATRKp 143 (321)
T KOG0148|consen 138 WATRKP 143 (321)
T ss_pred ccccCc
Confidence 998887
No 43
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=1.6e-13 Score=92.50 Aligned_cols=79 Identities=20% Similarity=0.417 Sum_probs=71.9
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEccc
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~ 168 (196)
...|||.|||..+|.+++.++|.+||.|..|+|-..+ ..+|-|||.|++..+|.+|+..|+|+-+.++.|.|.|..+
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 6789999999999999999999999999999986443 4489999999999999999999999999999999998766
Q ss_pred CC
Q 043064 169 NG 170 (196)
Q Consensus 169 ~~ 170 (196)
..
T Consensus 95 ~~ 96 (124)
T KOG0114|consen 95 ED 96 (124)
T ss_pred HH
Confidence 43
No 44
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.49 E-value=1.4e-13 Score=119.29 Aligned_cols=80 Identities=23% Similarity=0.378 Sum_probs=69.8
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCC--eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcE-----
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGE--IRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQT----- 160 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~--i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~----- 160 (196)
++.+|||+|||..+++++|+++|+.||. |..+.+.... ++ .+++|||+|.+.++|..||..||++.|.++.
T Consensus 393 ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~ 470 (481)
T TIGR01649 393 PSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-NE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPY 470 (481)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-CC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccc
Confidence 4578999999999999999999999998 7888775432 33 4789999999999999999999999999885
Q ss_pred -eEEEEcccC
Q 043064 161 -LTVDWAFSN 169 (196)
Q Consensus 161 -l~v~~a~~~ 169 (196)
|+|.|++++
T Consensus 471 ~lkv~fs~~~ 480 (481)
T TIGR01649 471 HLKVSFSTSR 480 (481)
T ss_pred eEEEEeccCC
Confidence 999998664
No 45
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=8.2e-14 Score=112.24 Aligned_cols=87 Identities=25% Similarity=0.376 Sum_probs=81.1
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.+.|||-.|.+.+|.++|.-+|+.||.|.+|.+++++.||.+..||||+|.+.++++.|.-.|++..|+.+.|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 44556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCCC
Q 043064 165 WAFSNGP 171 (196)
Q Consensus 165 ~a~~~~~ 171 (196)
|+.+-..
T Consensus 315 FSQSVsk 321 (479)
T KOG0415|consen 315 FSQSVSK 321 (479)
T ss_pred hhhhhhh
Confidence 9776543
No 46
>smart00360 RRM RNA recognition motif.
Probab=99.49 E-value=2e-13 Score=86.29 Aligned_cols=71 Identities=35% Similarity=0.649 Sum_probs=66.4
Q ss_pred EcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 94 VTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 94 V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
|+|||..+++++|+.+|.+||.|..+.+..++.++.++++|||+|.+.+.|..|+..+++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999998887778899999999999999999999999999999998873
No 47
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=4.4e-13 Score=113.23 Aligned_cols=84 Identities=29% Similarity=0.442 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh-----CC-ceeCCcE
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM-----NG-GELLTQT 160 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l-----~~-~~l~g~~ 160 (196)
..+.+|||.|||+++|++.|...|++||+|..+.|+.++.|+.++|.|||.|.+..+|..||... .+ ..|.|+.
T Consensus 290 ~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~ 369 (678)
T KOG0127|consen 290 TEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRL 369 (678)
T ss_pred cccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccE
Confidence 34689999999999999999999999999999999999999999999999999999999999875 23 5689999
Q ss_pred eEEEEcccCC
Q 043064 161 LTVDWAFSNG 170 (196)
Q Consensus 161 l~v~~a~~~~ 170 (196)
|+|..|.++.
T Consensus 370 Lkv~~Av~Rk 379 (678)
T KOG0127|consen 370 LKVTLAVTRK 379 (678)
T ss_pred EeeeeccchH
Confidence 9999887664
No 48
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.47 E-value=2.9e-13 Score=107.20 Aligned_cols=80 Identities=33% Similarity=0.555 Sum_probs=76.8
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEccc
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~ 168 (196)
..+|||+|||..+++++|.++|..||.|..+.+..++.++..+|||||.|.+.+.|..|+..+++..|.|+.|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999999754
No 49
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.47 E-value=9.6e-14 Score=102.45 Aligned_cols=81 Identities=28% Similarity=0.365 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEc
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a 166 (196)
....+|||+||+..++++.|.++|-+.|+|..+.++.++.+...+|||||+|.+.++|+-|++.||...|.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred c
Q 043064 167 F 167 (196)
Q Consensus 167 ~ 167 (196)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 6
No 50
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.46 E-value=4.6e-13 Score=116.10 Aligned_cols=78 Identities=31% Similarity=0.435 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCc-cCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 87 IEGWIILVTGVHE-EAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 87 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
.++++|||+||++ .+|+++|+.+|+.||.|..|.|+.++ +|||||+|.+.++|..||..|||..|.|+.|+|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 3678999999998 69999999999999999999998764 68999999999999999999999999999999999
Q ss_pred cccC
Q 043064 166 AFSN 169 (196)
Q Consensus 166 a~~~ 169 (196)
++..
T Consensus 348 s~~~ 351 (481)
T TIGR01649 348 SKQQ 351 (481)
T ss_pred cccc
Confidence 8654
No 51
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.46 E-value=1.2e-13 Score=108.69 Aligned_cols=115 Identities=19% Similarity=0.299 Sum_probs=92.2
Q ss_pred cCcccccCCCcHHHHHHhhhhcccC-----CCCCCCCCCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecC
Q 043064 51 KGRGFREEADSERHSRLADRNFESL-----GTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDR 125 (196)
Q Consensus 51 kG~gf~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~ 125 (196)
|.||||..+ ...+++-+...++.. .++....+.++...++|+|+||.+.++..+|+..|.+||++.+|.|+
T Consensus 36 KNYgFVHiE-dktaaedairNLhgYtLhg~nInVeaSksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--- 111 (346)
T KOG0109|consen 36 KNYGFVHIE-DKTAAEDAIRNLHGYTLHGVNINVEASKSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--- 111 (346)
T ss_pred cccceEEee-cccccHHHHhhcccceecceEEEEEeccccCCCccccccCCCCccccCHHHhhhhcccCCceeeeee---
Confidence 579999887 333444333433333 33333344556678999999999999999999999999999999998
Q ss_pred CCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccCCCCCC
Q 043064 126 RTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTG 174 (196)
Q Consensus 126 ~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~~~~~~ 174 (196)
++|+||.|.-.++|..|++.|+|.++.|++++|+.+.++-....
T Consensus 112 -----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrtap 155 (346)
T KOG0109|consen 112 -----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAP 155 (346)
T ss_pred -----cceeEEEEeeccchHHHHhcccccccccceeeeeeeccccccCC
Confidence 55999999999999999999999999999999999887755433
No 52
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.46 E-value=1.5e-13 Score=116.13 Aligned_cols=82 Identities=30% Similarity=0.468 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
+...|||+||++++++..|+.+|..||.|..|.+.++..+|.++||+||+|.+.+.|.+|++.|||..|-|+.|+|....
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 33449999999999999999999999999999999998899999999999999999999999999999999999998655
Q ss_pred cC
Q 043064 168 SN 169 (196)
Q Consensus 168 ~~ 169 (196)
-+
T Consensus 357 ~r 358 (549)
T KOG0147|consen 357 ER 358 (549)
T ss_pred ee
Confidence 43
No 53
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.46 E-value=2.3e-13 Score=114.94 Aligned_cols=83 Identities=29% Similarity=0.478 Sum_probs=79.5
Q ss_pred CEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccC
Q 043064 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSN 169 (196)
Q Consensus 90 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~ 169 (196)
..|||+|||+++++++|..+|+..|.|.+++++.|+.+|+.+||+|++|.+.+.|..|+..|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999766
Q ss_pred CCC
Q 043064 170 GPS 172 (196)
Q Consensus 170 ~~~ 172 (196)
...
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 543
No 54
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.45 E-value=1.2e-12 Score=83.52 Aligned_cols=74 Identities=31% Similarity=0.640 Sum_probs=67.9
Q ss_pred EEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 91 IILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 91 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
+|+|+|||+.+++++|+.+|..+|.|..+.+..+..+ ..+++|||+|.+.+.|..|+..+++..+.|+.|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999877533 6789999999999999999999999999999999875
No 55
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.43 E-value=7.8e-13 Score=115.28 Aligned_cols=81 Identities=17% Similarity=0.300 Sum_probs=67.8
Q ss_pred CCCEEEEcCCCcc--C--------cHHHHHHhhccCCCeeEEEEeecC---CCCCcceEEEEEecCHHHHHHHHHHhCCc
Q 043064 88 EGWIILVTGVHEE--A--------QEDDLQNVFGEYGEIRNLHLNLDR---RTGFVKGYALIEYENFEEAQNAITAMNGG 154 (196)
Q Consensus 88 ~~~~l~V~nLp~~--~--------te~~L~~~F~~~G~i~~v~i~~~~---~~g~~~g~afv~f~~~~~a~~al~~l~~~ 154 (196)
+..+|+|.||... + ..++|+.+|.+||.|..|.|+.+. .++...|++||+|.+.++|++||..|||.
T Consensus 408 ~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr 487 (509)
T TIGR01642 408 PTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR 487 (509)
T ss_pred CceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC
Confidence 5678999999642 1 236789999999999999998652 34566799999999999999999999999
Q ss_pred eeCCcEeEEEEccc
Q 043064 155 ELLTQTLTVDWAFS 168 (196)
Q Consensus 155 ~l~g~~l~v~~a~~ 168 (196)
.|+|+.|.|.|...
T Consensus 488 ~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 488 KFNDRVVVAAFYGE 501 (509)
T ss_pred EECCeEEEEEEeCH
Confidence 99999999999754
No 56
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=5.6e-13 Score=115.48 Aligned_cols=120 Identities=25% Similarity=0.436 Sum_probs=93.6
Q ss_pred CcCcccccCCCcHHHHHHhhhhcccCCCCCC----------------CCCCCCCCCCEEEEcCCCccCcHHHHHHhhccC
Q 043064 50 TKGRGFREEADSERHSRLADRNFESLGTDGG----------------PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEY 113 (196)
Q Consensus 50 ~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~ 113 (196)
+.|||||+|.+.+.+.. +...+++..+.+. ........+++|.|.|||+..+-.+++.+|..|
T Consensus 559 SmGfgFVEF~~~e~A~~-a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aF 637 (725)
T KOG0110|consen 559 SMGFGFVEFAKPESAQA-ALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAF 637 (725)
T ss_pred ccceeEEEecCHHHHHH-HHHHhcCceecCceEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcc
Confidence 55999999995554433 2233332222211 111222236799999999999999999999999
Q ss_pred CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccCC
Q 043064 114 GEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNG 170 (196)
Q Consensus 114 G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~~ 170 (196)
|.|..|+|+.....+.++|||||.|-++.+|.+|+..|.++-|.|+.|.++||....
T Consensus 638 GqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 638 GQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred cceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 999999998765567789999999999999999999999888999999999997654
No 57
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.36 E-value=4.9e-12 Score=77.69 Aligned_cols=56 Identities=30% Similarity=0.699 Sum_probs=50.6
Q ss_pred HHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEc
Q 043064 106 LQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166 (196)
Q Consensus 106 L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a 166 (196)
|..+|++||.|..+.+.... +++|||+|.+.++|..|+..||+..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999987553 589999999999999999999999999999999986
No 58
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=7.1e-13 Score=107.34 Aligned_cols=77 Identities=32% Similarity=0.491 Sum_probs=74.7
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
-++|||+.|.+.+.|+.|+..|..||+|++|.+.+|+.|++++|||||+|.-++.|+.|++.|||..++|+.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999974
No 59
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.35 E-value=3.5e-12 Score=103.57 Aligned_cols=134 Identities=15% Similarity=0.307 Sum_probs=100.4
Q ss_pred cccccccccCCCCCCCcCcccccCCCcHHHHH-Hhhh--hcccCCCCCCC--------CCCCCCCCCEEEEcCCCccCcH
Q 043064 35 QPKLKSAITGGAPKKTKGRGFREEADSERHSR-LADR--NFESLGTDGGP--------GPQRSIEGWIILVTGVHEEAQE 103 (196)
Q Consensus 35 ~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~-~~~~--~~~~~~~~~~~--------~~~~~~~~~~l~V~nLp~~~te 103 (196)
.-.+++. .+++++||||+.|........ +... .+.+....... .........+|||++||.++++
T Consensus 36 ~~vm~d~----~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e 111 (311)
T KOG4205|consen 36 CVVMRDP----STGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTE 111 (311)
T ss_pred EEEeccC----CCCCcccccceecCCCcchheeecccccccCCccccceeccCcccccccccccceeEEEecCcCCCCch
Confidence 3445555 567999999999984443332 2211 11221111111 1112223569999999999999
Q ss_pred HHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccCCCCC
Q 043064 104 DDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPST 173 (196)
Q Consensus 104 ~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~~~~~ 173 (196)
.+|+.+|.+||.|..+.++.+..+..++||+||.|.+.+.+.+++. ..-+.|.++.+.|..|.|+.-..
T Consensus 112 ~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 112 EDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred HHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccchhhcc
Confidence 9999999999999999999999999999999999999999999985 47788999999999999987553
No 60
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.33 E-value=2.1e-12 Score=101.73 Aligned_cols=73 Identities=22% Similarity=0.409 Sum_probs=68.6
Q ss_pred CEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccC
Q 043064 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSN 169 (196)
Q Consensus 90 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~ 169 (196)
.+|||+|||..+++.+|+.+|.+||+|.+|.|++ .|+||..++...++.||..||+++|+|..|+|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK--------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec--------ccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 3599999999999999999999999999999995 48999999999999999999999999999999998877
Q ss_pred C
Q 043064 170 G 170 (196)
Q Consensus 170 ~ 170 (196)
.
T Consensus 75 s 75 (346)
T KOG0109|consen 75 S 75 (346)
T ss_pred C
Confidence 4
No 61
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.33 E-value=6.2e-12 Score=95.97 Aligned_cols=83 Identities=19% Similarity=0.406 Sum_probs=75.0
Q ss_pred CCCCEEEEcCCCccCcHHHHHH----hhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeE
Q 043064 87 IEGWIILVTGVHEEAQEDDLQN----VFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLT 162 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~----~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~ 162 (196)
.+..+|||.||+..+..++|+. +|++||.|..|... .+.+.+|.|||.|.+.+.|-.|+..|+|..+.|++++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3445999999999999988888 99999999998765 4778899999999999999999999999999999999
Q ss_pred EEEcccCCCC
Q 043064 163 VDWAFSNGPS 172 (196)
Q Consensus 163 v~~a~~~~~~ 172 (196)
|+||+.+.+.
T Consensus 84 iqyA~s~sdi 93 (221)
T KOG4206|consen 84 IQYAKSDSDI 93 (221)
T ss_pred eecccCccch
Confidence 9999988765
No 62
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=1.4e-11 Score=99.25 Aligned_cols=83 Identities=24% Similarity=0.415 Sum_probs=74.3
Q ss_pred CCCCCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHH-hCCceeCC
Q 043064 80 GPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITA-MNGGELLT 158 (196)
Q Consensus 80 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~-l~~~~l~g 158 (196)
...|++.....+|||++|...+++.+|+++|.+||+|.++.+... +++|||+|.+.++|+.|... ++...|+|
T Consensus 219 ~lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G 292 (377)
T KOG0153|consen 219 TLEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVING 292 (377)
T ss_pred ccCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecc
Confidence 355777888899999999999999999999999999999988765 56899999999999999876 56667999
Q ss_pred cEeEEEEccc
Q 043064 159 QTLTVDWAFS 168 (196)
Q Consensus 159 ~~l~v~~a~~ 168 (196)
++|+|.|+.+
T Consensus 293 ~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 293 FRLKIKWGRP 302 (377)
T ss_pred eEEEEEeCCC
Confidence 9999999988
No 63
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=5e-12 Score=104.27 Aligned_cols=85 Identities=27% Similarity=0.439 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCce-eC--CcEeEE
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGE-LL--TQTLTV 163 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~-l~--g~~l~v 163 (196)
.+.-++||+-||..++|.+|+.+|.+||.|.+|.|++|+.++.++|||||.|.+.++|.+|+..||+.. |- ..+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 445679999999999999999999999999999999999999999999999999999999999999876 43 578999
Q ss_pred EEcccCCC
Q 043064 164 DWAFSNGP 171 (196)
Q Consensus 164 ~~a~~~~~ 171 (196)
.||.....
T Consensus 112 k~Ad~E~e 119 (510)
T KOG0144|consen 112 KYADGERE 119 (510)
T ss_pred cccchhhh
Confidence 99876543
No 64
>smart00361 RRM_1 RNA recognition motif.
Probab=99.30 E-value=1.6e-11 Score=78.97 Aligned_cols=61 Identities=25% Similarity=0.488 Sum_probs=54.6
Q ss_pred HHHHHHhhc----cCCCeeEEE-EeecCCC--CCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEE
Q 043064 103 EDDLQNVFG----EYGEIRNLH-LNLDRRT--GFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163 (196)
Q Consensus 103 e~~L~~~F~----~~G~i~~v~-i~~~~~~--g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v 163 (196)
+++|+++|+ +||.|.++. ++.++.+ +.++||+||.|.+.++|.+|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999985 6666656 889999999999999999999999999999999986
No 65
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=7.3e-12 Score=97.77 Aligned_cols=88 Identities=25% Similarity=0.369 Sum_probs=82.8
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
+..++|.|||..||......+|...|-.||.|.+.++..|+.|..+++|+||.|.++.+|+.||..|||+.|+=++|+|+
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCCCC
Q 043064 165 WAFSNGPS 172 (196)
Q Consensus 165 ~a~~~~~~ 172 (196)
+.+|+...
T Consensus 361 LKRPkdan 368 (371)
T KOG0146|consen 361 LKRPKDAN 368 (371)
T ss_pred hcCccccC
Confidence 99887654
No 66
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.24 E-value=3.7e-11 Score=90.51 Aligned_cols=87 Identities=25% Similarity=0.358 Sum_probs=78.6
Q ss_pred CCCCCCCCEEEEcCCCccCcHHHHHHhhccC-CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEe
Q 043064 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEY-GEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTL 161 (196)
Q Consensus 83 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l 161 (196)
++.......+||..+|..+.+..|..+|.+| |.+..+++.+++.||.++|||||+|.+.+.|..|.+.||++.|.++.|
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 3344456679999999999999999999998 788888888999999999999999999999999999999999999999
Q ss_pred EEEEcccC
Q 043064 162 TVDWAFSN 169 (196)
Q Consensus 162 ~v~~a~~~ 169 (196)
.|.+-.|.
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 99988665
No 67
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.24 E-value=3.8e-11 Score=99.36 Aligned_cols=79 Identities=24% Similarity=0.398 Sum_probs=73.1
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhcc-CCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEc
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGE-YGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a 166 (196)
..+.+||+|||.++.+.+|+++|.. .|+|+.|.++.| .+|+.+|+|.|+|++++.+++|++.||.+.+.|++|.|.-.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 3456999999999999999999985 799999999999 59999999999999999999999999999999999999754
Q ss_pred c
Q 043064 167 F 167 (196)
Q Consensus 167 ~ 167 (196)
.
T Consensus 122 ~ 122 (608)
T KOG4212|consen 122 H 122 (608)
T ss_pred C
Confidence 3
No 68
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=5.5e-11 Score=99.42 Aligned_cols=136 Identities=23% Similarity=0.348 Sum_probs=105.5
Q ss_pred CCCCCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCCCCC-------------------------CC
Q 043064 28 SSSPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDGG-------------------------PG 82 (196)
Q Consensus 28 ~~~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~ 82 (196)
..++..++..+++. ..+++||||+.|.+ ...+..+...++....... ..
T Consensus 190 ~~g~i~s~~v~~~~-----~g~~~~~gfv~f~~-~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~ 263 (369)
T KOG0123|consen 190 AYGSITSVAVMRDS-----IGKSKGFGFVNFEN-PEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAK 263 (369)
T ss_pred ccCcceEEEEeecC-----CCCCCCccceeecC-hhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhh
Confidence 33445566666664 55699999999995 4444434444444333210 01
Q ss_pred CCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeE
Q 043064 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLT 162 (196)
Q Consensus 83 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~ 162 (196)
+........|||.||+..++...|..+|+.||.|..+.|+.+ ..++++||+||.|.+.++|..|+..+|+..+.+++|.
T Consensus 264 ~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~-~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~ 342 (369)
T KOG0123|consen 264 RSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVD-ENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLY 342 (369)
T ss_pred ccccccccccccccCccccchhHHHHHHhcccceeeEEEEec-cCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchh
Confidence 223566788999999999999999999999999999999887 5899999999999999999999999999999999999
Q ss_pred EEEcccCC
Q 043064 163 VDWAFSNG 170 (196)
Q Consensus 163 v~~a~~~~ 170 (196)
|.++..+.
T Consensus 343 vav~qr~~ 350 (369)
T KOG0123|consen 343 VAVAQRKE 350 (369)
T ss_pred hhHHhhhc
Confidence 99987433
No 69
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.14 E-value=1.1e-10 Score=102.34 Aligned_cols=82 Identities=28% Similarity=0.562 Sum_probs=75.7
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
+.-++||||+.|+..+++.+|..+|..||+|.+|.++.. +++|||......+|.+|+..|+++.+.++.|+|.|
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 334799999999999999999999999999999988765 78999999999999999999999999999999999
Q ss_pred cccCCCCC
Q 043064 166 AFSNGPST 173 (196)
Q Consensus 166 a~~~~~~~ 173 (196)
|..+..+.
T Consensus 492 a~g~G~ks 499 (894)
T KOG0132|consen 492 AVGKGPKS 499 (894)
T ss_pred eccCCcch
Confidence 98877664
No 70
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.11 E-value=2.3e-10 Score=94.77 Aligned_cols=80 Identities=20% Similarity=0.290 Sum_probs=71.7
Q ss_pred CCCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEe
Q 043064 82 GPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTL 161 (196)
Q Consensus 82 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l 161 (196)
.+......++|+|.|||.++|++.|++-|..||.|....|+ .+|+.+| .|.|.++++|++|+..|++..|+|+.|
T Consensus 529 a~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I 603 (608)
T KOG4212|consen 529 AVGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNI 603 (608)
T ss_pred cccccccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCcee
Confidence 34456678899999999999999999999999999999884 5677776 899999999999999999999999999
Q ss_pred EEEEc
Q 043064 162 TVDWA 166 (196)
Q Consensus 162 ~v~~a 166 (196)
+|.|.
T Consensus 604 ~V~y~ 608 (608)
T KOG4212|consen 604 KVTYF 608 (608)
T ss_pred eeeeC
Confidence 99874
No 71
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.10 E-value=9.7e-10 Score=93.83 Aligned_cols=87 Identities=23% Similarity=0.375 Sum_probs=79.2
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
.+.-++.|||++|...+...+|+.+|++||.|+-..++.+..+.-.++|+||++.+..+|.+||..||.+.|.|+.|.|.
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 45567899999999999999999999999999999999887777779999999999999999999999999999999999
Q ss_pred EcccCCC
Q 043064 165 WAFSNGP 171 (196)
Q Consensus 165 ~a~~~~~ 171 (196)
.++..+.
T Consensus 481 kaKNEp~ 487 (940)
T KOG4661|consen 481 KAKNEPG 487 (940)
T ss_pred ecccCcc
Confidence 8876543
No 72
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.08 E-value=7.4e-10 Score=93.33 Aligned_cols=82 Identities=26% Similarity=0.347 Sum_probs=68.9
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEccc
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~ 168 (196)
..+|||.|||.+++..+|+++|.+||.|+...|..-...++..+|+||+|.+.+.++.||.. +-..|++++|.|..-++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 45599999999999999999999999999987765433344449999999999999999975 56779999999998766
Q ss_pred CCC
Q 043064 169 NGP 171 (196)
Q Consensus 169 ~~~ 171 (196)
...
T Consensus 367 ~~~ 369 (419)
T KOG0116|consen 367 GFR 369 (419)
T ss_pred ccc
Confidence 543
No 73
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.00 E-value=1.5e-09 Score=85.19 Aligned_cols=80 Identities=23% Similarity=0.393 Sum_probs=73.8
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEccc
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~ 168 (196)
.++|+|.|||..++..+|+++|..||.+..+.+.+++ +|.+.|.|-|.|...++|..|++.||+..|+|++|++....+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 4779999999999999999999999999999999985 899999999999999999999999999999999999986554
Q ss_pred C
Q 043064 169 N 169 (196)
Q Consensus 169 ~ 169 (196)
.
T Consensus 162 ~ 162 (243)
T KOG0533|consen 162 P 162 (243)
T ss_pred c
Confidence 3
No 74
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.99 E-value=6e-10 Score=90.64 Aligned_cols=85 Identities=20% Similarity=0.357 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
..++|||++|+|.++++.|++.|.+||+|..|.++.++.++.++||+||+|.+.+....+|. ...+.|+|+.|.+.-|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 56889999999999999999999999999999999999999999999999999888888874 35677999999999888
Q ss_pred cCCCCC
Q 043064 168 SNGPST 173 (196)
Q Consensus 168 ~~~~~~ 173 (196)
++....
T Consensus 84 ~r~~~~ 89 (311)
T KOG4205|consen 84 SREDQT 89 (311)
T ss_pred Cccccc
Confidence 876543
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=2.1e-09 Score=93.63 Aligned_cols=76 Identities=20% Similarity=0.425 Sum_probs=69.4
Q ss_pred EEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCC---CcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTG---FVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 92 l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g---~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
|||.||++.+|...|..+|..+|.|..+.|...+... .+.|||||+|.+.++|+.|++.|+|+.|+|+.|.|.++.
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999999999999999999999999999887664322 245999999999999999999999999999999999998
No 76
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.95 E-value=3.5e-09 Score=83.12 Aligned_cols=87 Identities=22% Similarity=0.374 Sum_probs=79.6
Q ss_pred CCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEE
Q 043064 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163 (196)
Q Consensus 84 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v 163 (196)
....+...+||+|+...+|...+...|..||.|..+.|+.++.++.++||+||+|.+.+.++.++. |++..|.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 456678889999999999999999999999999999999999888999999999999999999998 9999999999999
Q ss_pred EEcccCCC
Q 043064 164 DWAFSNGP 171 (196)
Q Consensus 164 ~~a~~~~~ 171 (196)
.+.....+
T Consensus 175 t~~r~~~p 182 (231)
T KOG4209|consen 175 TLKRTNVP 182 (231)
T ss_pred eeeeeecC
Confidence 98776643
No 77
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.92 E-value=1.5e-08 Score=77.51 Aligned_cols=86 Identities=20% Similarity=0.271 Sum_probs=70.7
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeec-CCCCCcceEEEEEecCHHHHHHHHHHhCCceeC---CcEeE
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLD-RRTGFVKGYALIEYENFEEAQNAITAMNGGELL---TQTLT 162 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~---g~~l~ 162 (196)
...++|||++||.++...+|..+|..|-..+.+.|... +.....+-+||+.|.+.+.|..|+..|||..++ ++.|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34789999999999999999999999866666555432 222234579999999999999999999999986 78999
Q ss_pred EEEcccCCCC
Q 043064 163 VDWAFSNGPS 172 (196)
Q Consensus 163 v~~a~~~~~~ 172 (196)
+.+|++....
T Consensus 112 iElAKSNtK~ 121 (284)
T KOG1457|consen 112 IELAKSNTKR 121 (284)
T ss_pred eeehhcCccc
Confidence 9999887754
No 78
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=3e-09 Score=83.34 Aligned_cols=83 Identities=25% Similarity=0.469 Sum_probs=73.9
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCce-eC--CcEeEEE
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGE-LL--TQTLTVD 164 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~-l~--g~~l~v~ 164 (196)
+.++|||+.|.+.-.|++++.+|..||.|.+|.+.+.. .|.++|++||.|.+.-+|+.||..|||.. +- ...|.|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 46789999999999999999999999999999998874 88899999999999999999999999875 33 4679999
Q ss_pred EcccCCC
Q 043064 165 WAFSNGP 171 (196)
Q Consensus 165 ~a~~~~~ 171 (196)
|+.....
T Consensus 97 ~ADTdkE 103 (371)
T KOG0146|consen 97 FADTDKE 103 (371)
T ss_pred eccchHH
Confidence 9976654
No 79
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=2.9e-09 Score=82.01 Aligned_cols=73 Identities=25% Similarity=0.493 Sum_probs=67.0
Q ss_pred CEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccC
Q 043064 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSN 169 (196)
Q Consensus 90 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~ 169 (196)
..+||++||+.+.+.+|..||..||.|..+.+. .||+||+|.+..+|..|+.-||+..|.|..+.|.|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 459999999999999999999999999998875 578999999999999999999999999988999999764
Q ss_pred C
Q 043064 170 G 170 (196)
Q Consensus 170 ~ 170 (196)
.
T Consensus 74 ~ 74 (216)
T KOG0106|consen 74 R 74 (216)
T ss_pred c
Confidence 3
No 80
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.83 E-value=1.4e-08 Score=82.00 Aligned_cols=80 Identities=28% Similarity=0.322 Sum_probs=72.1
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCee--------EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCc
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIR--------NLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQ 159 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~ 159 (196)
..+.|||+|||.++|-+++.++|+++|-|. .|.|..+. .|..+|=|+|.|...++++.|++.|++..|.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 356799999999999999999999999875 37787774 699999999999999999999999999999999
Q ss_pred EeEEEEccc
Q 043064 160 TLTVDWAFS 168 (196)
Q Consensus 160 ~l~v~~a~~ 168 (196)
.|+|+.|+-
T Consensus 212 ~~rVerAkf 220 (382)
T KOG1548|consen 212 KLRVERAKF 220 (382)
T ss_pred EEEEehhhh
Confidence 999987753
No 81
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.82 E-value=4.9e-08 Score=66.28 Aligned_cols=79 Identities=16% Similarity=0.284 Sum_probs=69.6
Q ss_pred CEEEEcCCCccCcHHHHHHhhcc--CCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC----CcEeEE
Q 043064 90 WIILVTGVHEEAQEDDLQNVFGE--YGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELL----TQTLTV 163 (196)
Q Consensus 90 ~~l~V~nLp~~~te~~L~~~F~~--~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~----g~~l~v 163 (196)
++|.|+|||...|...|.+++.. .|..-.+.++.|..++-+.|||||.|.+++.|..-...++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998875 366777888999888999999999999999999999999999874 577888
Q ss_pred EEccc
Q 043064 164 DWAFS 168 (196)
Q Consensus 164 ~~a~~ 168 (196)
.||+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88854
No 82
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.75 E-value=1.7e-08 Score=88.20 Aligned_cols=81 Identities=15% Similarity=0.343 Sum_probs=72.6
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCC---CCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRR---TGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
..+.|||+||++.+++..|-..|+.||+|..+.|++.+. ....+-++||.|-+..+|++|++.|+|..+.+..+++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 468899999999999999999999999999999987752 23455689999999999999999999999999999999
Q ss_pred Eccc
Q 043064 165 WAFS 168 (196)
Q Consensus 165 ~a~~ 168 (196)
|+++
T Consensus 253 Wgk~ 256 (877)
T KOG0151|consen 253 WGKA 256 (877)
T ss_pred cccc
Confidence 9843
No 83
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=1.2e-08 Score=86.96 Aligned_cols=73 Identities=23% Similarity=0.527 Sum_probs=66.5
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLT 162 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~ 162 (196)
...+..+|+|-|||..+++++|..+|+.||+|+.|..-..+ +|..||+|.+..+|+.|++.|++..+.|+.|+
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-----RGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-----CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 46678899999999999999999999999999997654443 88999999999999999999999999999988
No 84
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.61 E-value=3.5e-07 Score=77.18 Aligned_cols=118 Identities=19% Similarity=0.320 Sum_probs=83.4
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcccCCCC----------------CCCCCCCCCCCCEEEEcCCCccCcHHHHHHhh
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFESLGTD----------------GGPGPQRSIEGWIILVTGVHEEAQEDDLQNVF 110 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F 110 (196)
..|..|-+||++.+.+............+... ....+..+.....|-+.+||+.||+++|.+||
T Consensus 45 ~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FF 124 (510)
T KOG4211|consen 45 NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFF 124 (510)
T ss_pred CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHh
Confidence 46788999999996665544332211111100 01122233456789999999999999999999
Q ss_pred ccCCCeeE-EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEc
Q 043064 111 GEYGEIRN-LHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166 (196)
Q Consensus 111 ~~~G~i~~-v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a 166 (196)
+..-.+.. +.++.++ .+++.|-|||+|++.+.|++||.. |...|+.+-|.|..+
T Consensus 125 aGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 125 AGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred cCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 98744444 4556664 677899999999999999999964 777899998888643
No 85
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.51 E-value=5e-08 Score=74.46 Aligned_cols=79 Identities=19% Similarity=0.191 Sum_probs=70.6
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEccc
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~ 168 (196)
..+|||.|+...++++-|.++|-+-|+|..|.|...+ .++.+ ||||.|.+.-...-|+..+||..+.+..|.|.+-..
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 5789999999999999999999999999999998775 56656 999999999999999999999999999998876543
Q ss_pred C
Q 043064 169 N 169 (196)
Q Consensus 169 ~ 169 (196)
.
T Consensus 87 ~ 87 (267)
T KOG4454|consen 87 N 87 (267)
T ss_pred C
Confidence 3
No 86
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.46 E-value=7.7e-07 Score=73.63 Aligned_cols=75 Identities=28% Similarity=0.482 Sum_probs=68.4
Q ss_pred CCEEEEcCCCcc-CcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 89 GWIILVTGVHEE-AQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 89 ~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
...|.|.||... +|.+.|..+|+.||.|.+|.|..++ +-.|+|+|.+...|+.|+..|+|+.|.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 577889999775 9999999999999999999999875 4569999999999999999999999999999999986
Q ss_pred c
Q 043064 168 S 168 (196)
Q Consensus 168 ~ 168 (196)
-
T Consensus 372 H 372 (492)
T KOG1190|consen 372 H 372 (492)
T ss_pred C
Confidence 3
No 87
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.45 E-value=2.3e-07 Score=72.31 Aligned_cols=85 Identities=19% Similarity=0.335 Sum_probs=76.0
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
......+||.+-|.-.++.+.|...|.+|-......+++++.+|+++||+||.|.+..++..|+..|+|..++.++|++.
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 34557889999999999999999999999877778889999999999999999999999999999999999999999876
Q ss_pred EcccC
Q 043064 165 WAFSN 169 (196)
Q Consensus 165 ~a~~~ 169 (196)
-...+
T Consensus 266 kS~wk 270 (290)
T KOG0226|consen 266 KSEWK 270 (290)
T ss_pred hhhHH
Confidence 54433
No 88
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.45 E-value=3.2e-07 Score=70.77 Aligned_cols=73 Identities=21% Similarity=0.408 Sum_probs=64.3
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
....+.|.|.|++..+.+.+|.+.|..+|++....+. .+++||+|...++|.+||..|++..+.++.|.+.+
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 4557889999999999999999999999998554442 67899999999999999999999999999999954
Q ss_pred c
Q 043064 166 A 166 (196)
Q Consensus 166 a 166 (196)
.
T Consensus 168 ~ 168 (216)
T KOG0106|consen 168 N 168 (216)
T ss_pred c
Confidence 4
No 89
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.43 E-value=1.7e-06 Score=73.11 Aligned_cols=80 Identities=21% Similarity=0.300 Sum_probs=67.9
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEc
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a 166 (196)
.....|-+.+|||.+|+++|.+||+.+ .|..+.+. +.+|+..|-|||+|.+.+++++|++ .+...++.+.|.|--+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIP--RRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEe--ccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 345668889999999999999999998 57775544 4589999999999999999999997 4888899999999877
Q ss_pred ccCC
Q 043064 167 FSNG 170 (196)
Q Consensus 167 ~~~~ 170 (196)
.+..
T Consensus 84 ~~~e 87 (510)
T KOG4211|consen 84 GGAE 87 (510)
T ss_pred CCcc
Confidence 6554
No 90
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.43 E-value=2.1e-07 Score=79.82 Aligned_cols=84 Identities=27% Similarity=0.393 Sum_probs=78.0
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEc
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a 166 (196)
...+.+||++||-.+++.++.+++..||.+....++.+..+|.++||||.+|.+......|+..|||..+++++|.|+.|
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 34688999999999999999999999999999999999888999999999999999999999999999999999999987
Q ss_pred ccCC
Q 043064 167 FSNG 170 (196)
Q Consensus 167 ~~~~ 170 (196)
....
T Consensus 367 ~~g~ 370 (500)
T KOG0120|consen 367 IVGA 370 (500)
T ss_pred hccc
Confidence 6543
No 91
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.37 E-value=1.7e-06 Score=56.51 Aligned_cols=68 Identities=16% Similarity=0.364 Sum_probs=46.1
Q ss_pred CEEEEcCCCccCcHHHHH----HhhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 90 WIILVTGVHEEAQEDDLQ----NVFGEYG-EIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 90 ~~l~V~nLp~~~te~~L~----~~F~~~G-~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
..|+|.|||.+.....++ .++..+| .|..|. .+.|+|.|.+.+.|.+|++.|+|..+.|..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 468999999988876554 4555664 555541 3569999999999999999999999999999999
Q ss_pred Ecc
Q 043064 165 WAF 167 (196)
Q Consensus 165 ~a~ 167 (196)
|..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 973
No 92
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.36 E-value=1.9e-06 Score=69.86 Aligned_cols=83 Identities=22% Similarity=0.277 Sum_probs=75.3
Q ss_pred CCEEE-EcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 89 GWIIL-VTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 89 ~~~l~-V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
..++| |++|+..+++++|+.+|..+|.|..+.++.+..++...||+||.|.+...+..++.. +...+.+.++.+.+..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 45566 999999999999999999999999999999999999999999999999999999876 7888999999999998
Q ss_pred cCCCC
Q 043064 168 SNGPS 172 (196)
Q Consensus 168 ~~~~~ 172 (196)
+.+..
T Consensus 263 ~~~~~ 267 (285)
T KOG4210|consen 263 PRPKS 267 (285)
T ss_pred CCccc
Confidence 87654
No 93
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.36 E-value=1.7e-05 Score=59.38 Aligned_cols=71 Identities=20% Similarity=0.379 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 043064 80 GPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELL 157 (196)
Q Consensus 80 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~ 157 (196)
...++.......|.|++||+..++++|+++..+-|.|....+.++ |.+.|+|...++.+-|+..|....+.
T Consensus 106 ~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 106 RRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 445666667788999999999999999999999999998887765 47899999999999999999887653
No 94
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.33 E-value=6e-07 Score=73.12 Aligned_cols=87 Identities=26% Similarity=0.351 Sum_probs=78.2
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCee--------EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIR--------NLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGEL 156 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l 156 (196)
......+|||-+||..+++++|.++|.++|.|. .|.|.+++.|+..++-|.|.|.+...|+.|+.-+++..+
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 344567899999999999999999999999874 367788889999999999999999999999999999999
Q ss_pred CCcEeEEEEcccCCC
Q 043064 157 LTQTLTVDWAFSNGP 171 (196)
Q Consensus 157 ~g~~l~v~~a~~~~~ 171 (196)
.+..|+|.+|..+..
T Consensus 142 ~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTG 156 (351)
T ss_pred cCCCchhhhhhhccC
Confidence 999999999887764
No 95
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.14 E-value=8.8e-07 Score=75.64 Aligned_cols=82 Identities=22% Similarity=0.334 Sum_probs=74.7
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
+.....++|+.-|...++..+|.+||+.+|.|..|.|+.++.++.++|.+||+|.+.+....|| .|.|..+.|.+|.|+
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEec
Confidence 3445678999999989999999999999999999999999999999999999999999999999 699999999999998
Q ss_pred Ecc
Q 043064 165 WAF 167 (196)
Q Consensus 165 ~a~ 167 (196)
...
T Consensus 254 ~sE 256 (549)
T KOG0147|consen 254 LSE 256 (549)
T ss_pred ccH
Confidence 643
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.14 E-value=6.5e-06 Score=56.94 Aligned_cols=70 Identities=19% Similarity=0.461 Sum_probs=43.7
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCc-----eeCCcEeEE
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGG-----ELLTQTLTV 163 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~-----~l~g~~l~v 163 (196)
++.|+|.+++..++.++|+.+|+.||.|..|.+... ...|||.|.+.+.|+.|+..+.-. .|.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 357899999999999999999999999999888643 236899999999999999876433 456665555
Q ss_pred E
Q 043064 164 D 164 (196)
Q Consensus 164 ~ 164 (196)
.
T Consensus 75 ~ 75 (105)
T PF08777_consen 75 E 75 (105)
T ss_dssp E
T ss_pred E
Confidence 4
No 97
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.14 E-value=1.2e-05 Score=61.78 Aligned_cols=77 Identities=21% Similarity=0.387 Sum_probs=68.4
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-CcEeEEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELL-TQTLTVD 164 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~-g~~l~v~ 164 (196)
..+...+|+.|||..++.+.|..+|.+|.....++++... .+.|||+|.+...|..|...|++..|. ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 4567889999999999999999999999999999888665 789999999999999999999999987 7788888
Q ss_pred Ecc
Q 043064 165 WAF 167 (196)
Q Consensus 165 ~a~ 167 (196)
++.
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 774
No 98
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.13 E-value=2.6e-06 Score=65.48 Aligned_cols=68 Identities=21% Similarity=0.406 Sum_probs=55.7
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELL 157 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~ 157 (196)
...+.+|||.||.++++|++|+.+|+.|-....++|.- .+| ...||++|.+.+.|..|+..|+|..|.
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~--~~g--~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA--RGG--MPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec--CCC--cceEeecHHHHHHHHHHHHHhhcceec
Confidence 33467899999999999999999999997766666542 234 347999999999999999999987753
No 99
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.08 E-value=1.3e-05 Score=65.07 Aligned_cols=86 Identities=21% Similarity=0.431 Sum_probs=65.6
Q ss_pred CCCCCCEEEEcCCCccCcHHH----H--HHhhccCCCeeEEEEeecCCC-CCcceE--EEEEecCHHHHHHHHHHhCCce
Q 043064 85 RSIEGWIILVTGVHEEAQEDD----L--QNVFGEYGEIRNLHLNLDRRT-GFVKGY--ALIEYENFEEAQNAITAMNGGE 155 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~----L--~~~F~~~G~i~~v~i~~~~~~-g~~~g~--afv~f~~~~~a~~al~~l~~~~ 155 (196)
+.....-+||-+||+.+..++ | .++|++||.|..|.+.+...+ ....++ .||+|.+.++|.+||...+|..
T Consensus 110 RVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~ 189 (480)
T COG5175 110 RVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL 189 (480)
T ss_pred eeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc
Confidence 344567789999988765544 3 589999999999887654211 111222 4999999999999999999999
Q ss_pred eCCcEeEEEEcccCC
Q 043064 156 LLTQTLTVDWAFSNG 170 (196)
Q Consensus 156 l~g~~l~v~~a~~~~ 170 (196)
++|+.|+..|...+-
T Consensus 190 ~DGr~lkatYGTTKY 204 (480)
T COG5175 190 LDGRVLKATYGTTKY 204 (480)
T ss_pred ccCceEeeecCchHH
Confidence 999999999876653
No 100
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.96 E-value=7.2e-06 Score=66.80 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=65.6
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCC--CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEE
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYG--EIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v 163 (196)
...+||+||-|++|.++|.+.+...| .|.++++..++.+|.++|||+|...+....+..++.|...+|.|+.-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 45689999999999999988887765 4677888888899999999999999999999999999999999986555
No 101
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=6.5e-05 Score=64.77 Aligned_cols=75 Identities=29% Similarity=0.535 Sum_probs=61.2
Q ss_pred CCEEEEcCCCccCc------HHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-CcEe
Q 043064 89 GWIILVTGVHEEAQ------EDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELL-TQTL 161 (196)
Q Consensus 89 ~~~l~V~nLp~~~t------e~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~-g~~l 161 (196)
...|+|-|+|---. ..-|..+|+++|+|..+.++.+..+| .+||.|++|.+...|+.|++.|||+.|+ .+.+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 45688888876322 25678899999999999998886555 8999999999999999999999999976 5566
Q ss_pred EEE
Q 043064 162 TVD 164 (196)
Q Consensus 162 ~v~ 164 (196)
.|.
T Consensus 137 ~v~ 139 (698)
T KOG2314|consen 137 FVR 139 (698)
T ss_pred Eee
Confidence 664
No 102
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.80 E-value=1.9e-05 Score=61.76 Aligned_cols=73 Identities=12% Similarity=0.213 Sum_probs=60.5
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCC--------CCcc----eEEEEEecCHHHHHHHHHHhCCce
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRT--------GFVK----GYALIEYENFEEAQNAITAMNGGE 155 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~--------g~~~----g~afv~f~~~~~a~~al~~l~~~~ 155 (196)
..-.||+++||+.+...-|+.+|+.||.|-.|.+-....+ |.+. .-++|+|.+...|..+...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5678999999999999999999999999998887544323 2222 236799999999999999999999
Q ss_pred eCCcE
Q 043064 156 LLTQT 160 (196)
Q Consensus 156 l~g~~ 160 (196)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 103
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.79 E-value=8.6e-05 Score=64.39 Aligned_cols=80 Identities=18% Similarity=0.299 Sum_probs=64.6
Q ss_pred CCCCCCCCCEEEEcCCCccCcHHHHHHhhcc-CCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee---C
Q 043064 82 GPQRSIEGWIILVTGVHEEAQEDDLQNVFGE-YGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGEL---L 157 (196)
Q Consensus 82 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l---~ 157 (196)
.|.....++.|||.||-.-.|.-+|+.++.. .|.|... |+ | +.+.+|||.|.+.++|...+..|||..+ +
T Consensus 437 SPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sN 510 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSN 510 (718)
T ss_pred CCCCCCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-H----HhhcceeEecccHHHHHHHHHHHhccccCCCC
Confidence 3446667899999999999999999999996 5556655 32 2 1367899999999999999999999975 6
Q ss_pred CcEeEEEEcc
Q 043064 158 TQTLTVDWAF 167 (196)
Q Consensus 158 g~~l~v~~a~ 167 (196)
.+.|.+.|+.
T Consensus 511 PK~L~adf~~ 520 (718)
T KOG2416|consen 511 PKHLIADFVR 520 (718)
T ss_pred CceeEeeecc
Confidence 7888888764
No 104
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.69 E-value=0.00011 Score=44.31 Aligned_cols=52 Identities=21% Similarity=0.439 Sum_probs=41.6
Q ss_pred CEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHH
Q 043064 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAI 148 (196)
Q Consensus 90 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al 148 (196)
+.|-|.+.++...+. +...|.+||+|..+.+... ..+.+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 468899999886655 4558889999999887622 457999999999999985
No 105
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.66 E-value=0.00045 Score=57.07 Aligned_cols=81 Identities=23% Similarity=0.351 Sum_probs=71.4
Q ss_pred CCCCCCCEEEEcCCCcc-CcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeE
Q 043064 84 QRSIEGWIILVTGVHEE-AQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLT 162 (196)
Q Consensus 84 ~~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~ 162 (196)
....+++.+.|.+|... ++-+-|..+|-.||.|..|.+++.+ .|-|.|+..+..+.++|+.-||+..+-|.+|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 44557899999999876 6778899999999999999999876 67899999999999999999999999999999
Q ss_pred EEEcccC
Q 043064 163 VDWAFSN 169 (196)
Q Consensus 163 v~~a~~~ 169 (196)
|.+++..
T Consensus 357 v~~SkQ~ 363 (494)
T KOG1456|consen 357 VCVSKQN 363 (494)
T ss_pred Eeecccc
Confidence 9887654
No 106
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.62 E-value=0.00045 Score=57.05 Aligned_cols=84 Identities=23% Similarity=0.370 Sum_probs=67.3
Q ss_pred CCCCCCCCCEEEEcCCCc--cCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC--
Q 043064 82 GPQRSIEGWIILVTGVHE--EAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELL-- 157 (196)
Q Consensus 82 ~~~~~~~~~~l~V~nLp~--~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~-- 157 (196)
++....+.+.|.++-|.+ -+|-+-|..+....|+|..|.|.+. +|. .|.|+|.+.+.|++|...|||..|.
T Consensus 113 g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsG 187 (494)
T KOG1456|consen 113 GDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSG 187 (494)
T ss_pred CCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhccccccccc
Confidence 344455567777665554 4888999999999999999988654 444 5899999999999999999999974
Q ss_pred CcEeEEEEcccCC
Q 043064 158 TQTLTVDWAFSNG 170 (196)
Q Consensus 158 g~~l~v~~a~~~~ 170 (196)
-+.|+|.||+|..
T Consensus 188 CCTLKIeyAkP~r 200 (494)
T KOG1456|consen 188 CCTLKIEYAKPTR 200 (494)
T ss_pred ceeEEEEecCcce
Confidence 4789999998864
No 107
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.55 E-value=0.00024 Score=59.17 Aligned_cols=77 Identities=23% Similarity=0.233 Sum_probs=63.2
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCc-EeEEEEc
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQ-TLTVDWA 166 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~-~l~v~~a 166 (196)
++.+|.++|+|+.++|++|+.+|..-|-..+.... -++.+-++++.+.+.+.|..|+..++++.++.. .|+|+|+
T Consensus 413 psatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 413 PSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred chhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence 46789999999999999999999988765443221 233356899999999999999999999998755 8999998
Q ss_pred cc
Q 043064 167 FS 168 (196)
Q Consensus 167 ~~ 168 (196)
++
T Consensus 489 ks 490 (492)
T KOG1190|consen 489 KS 490 (492)
T ss_pred cc
Confidence 65
No 108
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.51 E-value=0.00015 Score=65.57 Aligned_cols=80 Identities=30% Similarity=0.387 Sum_probs=70.4
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--cEeE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLT--QTLT 162 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g--~~l~ 162 (196)
.....+.++|++|++++....|...|..||.|..|.+- .| ..|++|.|.+...++.|+..|-+..|++ +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~----hg--q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR----HG--QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc----cC--CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 67788999999999999999999999999999998764 33 3599999999999999999999999986 6799
Q ss_pred EEEcccCC
Q 043064 163 VDWAFSNG 170 (196)
Q Consensus 163 v~~a~~~~ 170 (196)
|.|+.+..
T Consensus 525 vdla~~~~ 532 (975)
T KOG0112|consen 525 VDLASPPG 532 (975)
T ss_pred cccccCCC
Confidence 99987644
No 109
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.50 E-value=0.00044 Score=61.20 Aligned_cols=75 Identities=16% Similarity=0.360 Sum_probs=64.6
Q ss_pred CEEEEcCCCccCcHHHHHHhhccCCCeeE-EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRN-LHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 90 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
+.|-+.|+|++++-++|.+||..|-.+-. |.+.++ ..|+..|-|.|.|++.++|.+|...|++..|..+.++|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 37788999999999999999999966543 444443 6899999999999999999999999999999999988764
No 110
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.50 E-value=4.6e-05 Score=68.42 Aligned_cols=110 Identities=16% Similarity=0.243 Sum_probs=84.2
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcccCCCCCCCCCCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCC
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRR 126 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~ 126 (196)
.++-+|.+|+.|-.......... +..... .....|+|.|+|+..|.+.|+.+++.+|.++++.++.. .
T Consensus 705 ~~~~rG~~Y~~F~~~~~~~aaV~--f~d~~~---------~gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r 772 (881)
T KOG0128|consen 705 EKRFRGKAYVEFLKPEHAGAAVA--FRDSCF---------FGKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-R 772 (881)
T ss_pred ccccccceeeEeecCCchhhhhh--hhhhhh---------hhhhhhheeCCCCCCchHHHHhhccccCCccccchhhh-h
Confidence 45678999999975444433211 111111 11456999999999999999999999999999988777 4
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEccc
Q 043064 127 TGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168 (196)
Q Consensus 127 ~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~ 168 (196)
.|+++|.+||.|.+..++.+++.......+.-..+.|+.+.|
T Consensus 773 ~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 773 AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 899999999999999999999987777777767777776554
No 111
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.44 E-value=0.00053 Score=59.25 Aligned_cols=65 Identities=15% Similarity=0.350 Sum_probs=53.3
Q ss_pred HHHHHhhccCCCeeEEEEeecCC---CCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEccc
Q 043064 104 DDLQNVFGEYGEIRNLHLNLDRR---TGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168 (196)
Q Consensus 104 ~~L~~~F~~~G~i~~v~i~~~~~---~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~ 168 (196)
++++.-+++||.|..|.++.+.. ..-..|-.||+|.+.+++++|+..|+|.++.++.+...|-..
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 45566678999999999987721 223456689999999999999999999999999999988654
No 112
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.33 E-value=0.00033 Score=58.69 Aligned_cols=71 Identities=25% Similarity=0.468 Sum_probs=57.9
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeec---CCC--CC--------cceEEEEEecCHHHHHHHHHHh
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLD---RRT--GF--------VKGYALIEYENFEEAQNAITAM 151 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~---~~~--g~--------~~g~afv~f~~~~~a~~al~~l 151 (196)
...++++|.+-|||.+-.-+.|.++|+.+|.|+.|+|... ..+ +. .+-+|+|+|...+.|.+|.+.|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3467899999999999888999999999999999999766 222 11 1457999999999999999887
Q ss_pred CCce
Q 043064 152 NGGE 155 (196)
Q Consensus 152 ~~~~ 155 (196)
+...
T Consensus 307 ~~e~ 310 (484)
T KOG1855|consen 307 NPEQ 310 (484)
T ss_pred chhh
Confidence 5443
No 113
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.33 E-value=0.0018 Score=44.29 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=50.4
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCeeEEE-EeecC------CCCCcceEEEEEecCHHHHHHHHHHhCCceeCCc-E
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLH-LNLDR------RTGFVKGYALIEYENFEEAQNAITAMNGGELLTQ-T 160 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~-i~~~~------~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~-~ 160 (196)
.+.|.|-+.|+. ....+...|++||.|.+.. +..+. .......+..|.|.++.+|.+||. .||..|.|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 456888899988 4567888999999997764 11000 001124588999999999999995 599999885 4
Q ss_pred eEEEEcc
Q 043064 161 LTVDWAF 167 (196)
Q Consensus 161 l~v~~a~ 167 (196)
+-|.+..
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5566664
No 114
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.24 E-value=0.0046 Score=50.66 Aligned_cols=84 Identities=19% Similarity=0.331 Sum_probs=63.8
Q ss_pred CCCCCCCCCEEEEcCCCc----cCc-------HHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHH
Q 043064 82 GPQRSIEGWIILVTGVHE----EAQ-------EDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITA 150 (196)
Q Consensus 82 ~~~~~~~~~~l~V~nLp~----~~t-------e~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~ 150 (196)
.+......++|.|.||=. ..+ .++|.+-..+||.|.+|.+.-. -+.|.+-|.|.+.+.|..||+.
T Consensus 258 ~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~ 333 (382)
T KOG1548|consen 258 DPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQT 333 (382)
T ss_pred ccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHH
Confidence 345556678899998832 122 2455666778999999877521 1378899999999999999999
Q ss_pred hCCceeCCcEeEEEEcccC
Q 043064 151 MNGGELLTQTLTVDWAFSN 169 (196)
Q Consensus 151 l~~~~l~g~~l~v~~a~~~ 169 (196)
|+|..++|+.|..+....+
T Consensus 334 m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 334 MDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred hcCeeecceEEEEEEeCCc
Confidence 9999999999998765433
No 115
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.16 E-value=0.00063 Score=56.37 Aligned_cols=78 Identities=23% Similarity=0.294 Sum_probs=65.2
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCC-eeE--EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEE
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGE-IRN--LHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~--v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v 163 (196)
.....|-+++||...+.++|.++|..|.. |.. |.++.+ ..|...|-|||+|.+.+.|..|....+++....+.|.|
T Consensus 278 ~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 278 RSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred CCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEE
Confidence 33567899999999999999999998854 333 667666 57899999999999999999999998888888888888
Q ss_pred EE
Q 043064 164 DW 165 (196)
Q Consensus 164 ~~ 165 (196)
--
T Consensus 357 fp 358 (508)
T KOG1365|consen 357 FP 358 (508)
T ss_pred ee
Confidence 53
No 116
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.14 E-value=0.0027 Score=46.17 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=45.3
Q ss_pred HHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccCCC
Q 043064 104 DDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGP 171 (196)
Q Consensus 104 ~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~~~ 171 (196)
.+|...|..||.+.-++++.+ ..+|+|.+-+.|-+|+. ++|..+.|+.|+|....|.+-
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE------
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccHH
Confidence 367788889999888887743 47999999999999994 899999999999998877764
No 117
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.0027 Score=54.46 Aligned_cols=67 Identities=18% Similarity=0.300 Sum_probs=60.4
Q ss_pred CCCCCCCEEEEcCCCccCcHHHHHHhhc-cCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHH
Q 043064 84 QRSIEGWIILVTGVHEEAQEDDLQNVFG-EYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITA 150 (196)
Q Consensus 84 ~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~ 150 (196)
+.-.+.+||||++||.-++..+|-.+|. -||.|..+-|-.|+.-+.++|-|-|+|.+..+-.+||..
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 3445679999999999999999999999 599999999999988889999999999999999999964
No 118
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.0034 Score=53.91 Aligned_cols=63 Identities=19% Similarity=0.381 Sum_probs=46.9
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCC---CCCcce---EEEEEecCHHHHHHHHHH
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRR---TGFVKG---YALIEYENFEEAQNAITA 150 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~~~g---~afv~f~~~~~a~~al~~ 150 (196)
.-.++|||++||++++|+.|...|..||.+. |.|+.... -.-++| |+|+.|++......-|..
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 3468899999999999999999999999863 45542111 112455 999999998777766544
No 119
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.78 E-value=0.0014 Score=54.96 Aligned_cols=76 Identities=18% Similarity=0.304 Sum_probs=59.7
Q ss_pred CEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCce-eCCcEeEEEEccc
Q 043064 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGE-LLTQTLTVDWAFS 168 (196)
Q Consensus 90 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~-l~g~~l~v~~a~~ 168 (196)
.++||+||.+.++..+|..+|...----+-.++.. .||+||.+.+...|.+|++.+++.. +.|+++.|.+.-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 35999999999999999999985411111112221 5899999999999999999999875 8999999998877
Q ss_pred CCC
Q 043064 169 NGP 171 (196)
Q Consensus 169 ~~~ 171 (196)
+..
T Consensus 76 kkq 78 (584)
T KOG2193|consen 76 KKQ 78 (584)
T ss_pred HHH
Confidence 654
No 120
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.67 E-value=0.0032 Score=52.38 Aligned_cols=75 Identities=19% Similarity=0.368 Sum_probs=58.1
Q ss_pred EEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCC---CCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEE-EEc
Q 043064 91 IILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRR---TGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV-DWA 166 (196)
Q Consensus 91 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v-~~a 166 (196)
.|.|.||.+.+|.+++..||...|.|..+.|..... .....-.|||.|.+...+..|.. |.++++-++-|.| -|+
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 699999999999999999999999999988764321 12345689999999999998875 6666655555444 443
No 121
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.48 E-value=0.0014 Score=51.59 Aligned_cols=61 Identities=18% Similarity=0.331 Sum_probs=48.2
Q ss_pred HHHHhhc-cCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEc
Q 043064 105 DLQNVFG-EYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166 (196)
Q Consensus 105 ~L~~~F~-~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a 166 (196)
+|...|. +||+|..+.+..+. .--..|-+||.|...++|++|+..|||.-+.|++|...+.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 4444445 89999988665432 2234677999999999999999999999999999998764
No 122
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.40 E-value=0.011 Score=49.32 Aligned_cols=73 Identities=19% Similarity=0.237 Sum_probs=54.5
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccC----CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEE
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEY----GEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~----G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v 163 (196)
.-.|-+++||+++++.++.++|..- |....|.++.. .+|+..|-|||.|...++|+.||.. |...|+-+.|.+
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 3456678999999999999999742 23445555554 4889999999999999999999964 555555544443
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.33 E-value=0.00024 Score=64.00 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=59.8
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELL 157 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~ 157 (196)
..++||+||+..+.+.+|...|..+|.+..+.+..+...++.+|.||+.|...+.+.+|+....+..++
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 467899999999999999999999999888877766678999999999999999999999765555544
No 124
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.31 E-value=0.0095 Score=45.06 Aligned_cols=81 Identities=12% Similarity=0.167 Sum_probs=50.5
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhcc-CCCe---eEEEEeecCCC--CCcceEEEEEecCHHHHHHHHHHhCCceeCC---
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGE-YGEI---RNLHLNLDRRT--GFVKGYALIEYENFEEAQNAITAMNGGELLT--- 158 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i---~~v~i~~~~~~--g~~~g~afv~f~~~~~a~~al~~l~~~~l~g--- 158 (196)
...+|.|++||+++|++++...++. ++.. ..+.-.....+ -....-|||.|.+.+++..-+..++|+.+..
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4568999999999999999987776 5554 22221111111 1234569999999999999999999987532
Q ss_pred --cEeEEEEccc
Q 043064 159 --QTLTVDWAFS 168 (196)
Q Consensus 159 --~~l~v~~a~~ 168 (196)
....|.+|--
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 3566777643
No 125
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.25 E-value=0.0085 Score=47.26 Aligned_cols=61 Identities=20% Similarity=0.289 Sum_probs=53.6
Q ss_pred CEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh
Q 043064 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151 (196)
Q Consensus 90 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l 151 (196)
..|||.||+..++.+.|...|+.||+|....+..| ..++..+-++|.|...-.|.+|+..+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHh
Confidence 67999999999999999999999999988666666 36777888999999999999998776
No 126
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.22 E-value=0.018 Score=46.43 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=50.4
Q ss_pred HHHHHhhccCCCeeEEEEeecCCCCCc-ceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 104 DDLQNVFGEYGEIRNLHLNLDRRTGFV-KGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 104 ~~L~~~F~~~G~i~~v~i~~~~~~g~~-~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
.++++...+||.|..|.|...+..-.. ---.||+|...+.|.+|+--|||..++|+.++..|-.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 466777789999999887665432211 1237999999999999999999999999999887754
No 127
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.18 E-value=0.03 Score=36.76 Aligned_cols=56 Identities=18% Similarity=0.337 Sum_probs=42.0
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNG 153 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~ 153 (196)
.+..+|+ .|..+...+|..+|+.||.|. |.++-+ .-|||.....+.|..++..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 4666776 999999999999999999974 455543 2599999999999999988764
No 128
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.04 E-value=0.046 Score=33.89 Aligned_cols=55 Identities=24% Similarity=0.318 Sum_probs=43.5
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccC---CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEY---GEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM 151 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~---G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l 151 (196)
...|+|.++. +++.++++.+|..| .....|.|+-|. -|-|.|.+...|.+||..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3569999985 57889999999988 234678888663 3679999999999999754
No 129
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.03 E-value=0.0057 Score=52.07 Aligned_cols=77 Identities=18% Similarity=0.287 Sum_probs=60.9
Q ss_pred CCCCEEEEcCCCccC-cHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 87 IEGWIILVTGVHEEA-QEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~-te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
.+.+.|-+.-.|+.+ +-.+|...|.+||.|..|.+-.. .-.|.|+|.+..+|-.|.. .++..|+++.|+|.|
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFW 442 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEE
Confidence 344556666666664 55899999999999999987544 3458999999999977764 689999999999999
Q ss_pred cccCC
Q 043064 166 AFSNG 170 (196)
Q Consensus 166 a~~~~ 170 (196)
-.+.+
T Consensus 443 hnps~ 447 (526)
T KOG2135|consen 443 HNPSP 447 (526)
T ss_pred ecCCc
Confidence 88744
No 130
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.00 E-value=0.0064 Score=54.13 Aligned_cols=75 Identities=13% Similarity=0.046 Sum_probs=62.6
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCeeE-EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRN-LHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
+..|||..||..+++..+..+|+..-.|++ |.|... -+++.++.|||.|...+++..|+..-+.+.++.+.|+|.
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 678999999999999999999998666666 666555 377888999999999888888876667777888889986
No 131
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.96 E-value=0.0028 Score=51.74 Aligned_cols=84 Identities=23% Similarity=0.323 Sum_probs=63.6
Q ss_pred CCCCEEEEcCCCccCcHH-HH--HHhhccCCCeeEEEEeecCC----CCCcceEEEEEecCHHHHHHHHHHhCCceeCCc
Q 043064 87 IEGWIILVTGVHEEAQED-DL--QNVFGEYGEIRNLHLNLDRR----TGFVKGYALIEYENFEEAQNAITAMNGGELLTQ 159 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~-~L--~~~F~~~G~i~~v~i~~~~~----~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~ 159 (196)
.....+||-+|+..+..+ .| ...|.+||.|..|.+..+.. .+. ..-++|+|...++|..||...+|..+.|+
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~-~~s~yITy~~~eda~rci~~v~g~~~dg~ 153 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGG-TCSVYITYEEEEDADRCIDDVDGFVDDGR 153 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCC-CCcccccccchHhhhhHHHHhhhHHhhhh
Confidence 344668888888775443 33 36888999999998876541 122 22389999999999999999999999999
Q ss_pred EeEEEEcccCCC
Q 043064 160 TLTVDWAFSNGP 171 (196)
Q Consensus 160 ~l~v~~a~~~~~ 171 (196)
.|+..+..++-.
T Consensus 154 ~lka~~gttkyc 165 (327)
T KOG2068|consen 154 ALKASLGTTKYC 165 (327)
T ss_pred hhHHhhCCCcch
Confidence 988887766653
No 132
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.87 E-value=0.067 Score=38.77 Aligned_cols=75 Identities=16% Similarity=0.305 Sum_probs=55.8
Q ss_pred CCCCCCEEEEcCCCccCcH----HHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcE
Q 043064 85 RSIEGWIILVTGVHEEAQE----DDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQT 160 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te----~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~ 160 (196)
...+-.+|.|.-|..++.. ..+...++.||+|.+|.+. | +.-|.|.|.+..+|-.|+..++. ..-|..
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 3455678888877666533 4455667789999998763 2 34599999999999999988876 556778
Q ss_pred eEEEEcc
Q 043064 161 LTVDWAF 167 (196)
Q Consensus 161 l~v~~a~ 167 (196)
+.+.|-.
T Consensus 154 ~qCsWqq 160 (166)
T PF15023_consen 154 FQCSWQQ 160 (166)
T ss_pred EEeeccc
Confidence 8888754
No 133
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.86 E-value=0.025 Score=43.00 Aligned_cols=63 Identities=17% Similarity=0.184 Sum_probs=45.8
Q ss_pred cHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC--CceeCCcEeEEEEcccCC
Q 043064 102 QEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMN--GGELLTQTLTVDWAFSNG 170 (196)
Q Consensus 102 te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~--~~~l~g~~l~v~~a~~~~ 170 (196)
....|+.+|..|+.+..+.++.. -+-..|.|.+.+.|..|...|+ +..+.|..|+|.|+.+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 34789999999999888766643 3347899999999999999999 899999999999996544
No 134
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.80 E-value=0.0027 Score=57.75 Aligned_cols=80 Identities=13% Similarity=0.211 Sum_probs=67.8
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
.+.+||++||+..+++.+|+..|..+|.|..|.|-... -+.-.-|+||.|.+..++..|+..+.+..|..-.+++.+..
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 46889999999999999999999999999999986553 33335589999999999999999999988877677777765
Q ss_pred c
Q 043064 168 S 168 (196)
Q Consensus 168 ~ 168 (196)
+
T Consensus 450 ~ 450 (975)
T KOG0112|consen 450 P 450 (975)
T ss_pred c
Confidence 4
No 135
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=95.58 E-value=0.0053 Score=47.44 Aligned_cols=109 Identities=18% Similarity=0.259 Sum_probs=78.6
Q ss_pred ccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCCCCCCCCCCCCCCCEEEEcC----CCccCcHHHHHHhhccC
Q 043064 38 LKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTG----VHEEAQEDDLQNVFGEY 113 (196)
Q Consensus 38 ~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~te~~L~~~F~~~ 113 (196)
+|..|..+.-.+.| |+||.|. .+-..-++...+++......+.. .+++-++ |...++++.+...|++-
T Consensus 37 ~kv~ip~~~d~~~k-Fa~v~f~-~E~sv~~a~~L~ng~~l~~~e~q------~~~r~G~shapld~r~~~ei~~~v~s~a 108 (267)
T KOG4454|consen 37 YKVGIPSGQDQEQK-FAYVFFP-NENSVQLAGQLENGDDLEEDEEQ------RTLRCGNSHAPLDERVTEEILYEVFSQA 108 (267)
T ss_pred EEEeCCCCccCCCc-eeeeecc-cccchhhhhhhcccchhccchhh------cccccCCCcchhhhhcchhhheeeeccc
Confidence 44444444444556 9999998 45555666667776665543332 2355566 67788999999999999
Q ss_pred CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCce
Q 043064 114 GEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGE 155 (196)
Q Consensus 114 G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~ 155 (196)
+++..+++..+. .|.++.+.|+.+.-....-.++....+..
T Consensus 109 ~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 109 GPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred CCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 999999998875 58888899999988877777776665543
No 136
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.33 E-value=0.0015 Score=54.89 Aligned_cols=112 Identities=19% Similarity=0.292 Sum_probs=77.8
Q ss_pred cCcccccCCCcHHHHHHhhhhcccCCCCCC-----CCCCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEe-ec
Q 043064 51 KGRGFREEADSERHSRLADRNFESLGTDGG-----PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLN-LD 124 (196)
Q Consensus 51 kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-~~ 124 (196)
.||.|+...+..-+.+.....-....+.+. ..-++...++++.|.|+|+...++-|..|+..||.+..|..+ .+
T Consensus 37 ~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~ 116 (584)
T KOG2193|consen 37 SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTD 116 (584)
T ss_pred cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccc
Confidence 489999887444444322211111222221 112233346779999999999999999999999999888553 33
Q ss_pred CCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEc
Q 043064 125 RRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166 (196)
Q Consensus 125 ~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a 166 (196)
..+. ..-|+|...+.+..||..|++..+....++|.|.
T Consensus 117 ~eta----vvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 117 SETA----VVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred hHHH----HHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 2221 2347899999999999999999999999999885
No 137
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=94.48 E-value=0.077 Score=46.22 Aligned_cols=82 Identities=18% Similarity=0.209 Sum_probs=56.5
Q ss_pred CCEEEEcCCCccCcHHHHHHhhc-cCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee---C-CcEeEE
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFG-EYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGEL---L-TQTLTV 163 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l---~-g~~l~v 163 (196)
.+++.|.|+|-..|-.-|.+.-. ..|.-..+.++.|-.+..+.|||||.|.+.+++....+.+||..+ + .+.+.+
T Consensus 388 rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~i 467 (549)
T KOG4660|consen 388 RTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASI 467 (549)
T ss_pred hhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeee
Confidence 34455566665544444333322 245555677777766777899999999999999999999999874 3 466778
Q ss_pred EEcccCC
Q 043064 164 DWAFSNG 170 (196)
Q Consensus 164 ~~a~~~~ 170 (196)
.||+-..
T Consensus 468 tYArIQG 474 (549)
T KOG4660|consen 468 TYARIQG 474 (549)
T ss_pred ehhhhhc
Confidence 8876544
No 138
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.96 E-value=0.043 Score=48.68 Aligned_cols=73 Identities=10% Similarity=0.072 Sum_probs=61.6
Q ss_pred CCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEE
Q 043064 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163 (196)
Q Consensus 84 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v 163 (196)
+...+..++||+|+...+...-++.++..+|.|..+... -|+|+.|..+.....|+..++-..++|+.+.+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---------hhcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 344456789999999999999999999999988776543 28999999999999999999988898888776
Q ss_pred EE
Q 043064 164 DW 165 (196)
Q Consensus 164 ~~ 165 (196)
.-
T Consensus 106 ~~ 107 (668)
T KOG2253|consen 106 NV 107 (668)
T ss_pred cc
Confidence 53
No 139
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.76 E-value=1.6 Score=30.38 Aligned_cols=74 Identities=18% Similarity=0.159 Sum_probs=49.7
Q ss_pred CEEEEcCCCcc-CcHHHHHHhhccC-CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC---CcEeEEE
Q 043064 90 WIILVTGVHEE-AQEDDLQNVFGEY-GEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELL---TQTLTVD 164 (196)
Q Consensus 90 ~~l~V~nLp~~-~te~~L~~~F~~~-G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~---g~~l~v~ 164 (196)
..|.|--+|+. ++-+.|..+.+.+ ..|..++|+++. ..++-.+++.|.+...|..-...+||..++ ...++|-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Chvv 90 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVV 90 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEE
Confidence 44555455555 5555666555555 456778888763 224556889999999999999999999864 3445544
Q ss_pred E
Q 043064 165 W 165 (196)
Q Consensus 165 ~ 165 (196)
|
T Consensus 91 f 91 (110)
T PF07576_consen 91 F 91 (110)
T ss_pred E
Confidence 4
No 140
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.76 E-value=0.043 Score=50.07 Aligned_cols=74 Identities=19% Similarity=0.229 Sum_probs=61.3
Q ss_pred EEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCce--eCCcEeEEEEcccC
Q 043064 92 ILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGE--LLTQTLTVDWAFSN 169 (196)
Q Consensus 92 l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~--l~g~~l~v~~a~~~ 169 (196)
.++.|.+-..+-..|..+++.||.+.+.+.+++ ...|.|.|.+.+.|..|+..|+|.. ..|-+.+|.+|++-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 444555557778899999999999999887766 3579999999999999999999997 45888999999876
Q ss_pred CC
Q 043064 170 GP 171 (196)
Q Consensus 170 ~~ 171 (196)
+-
T Consensus 375 ~~ 376 (1007)
T KOG4574|consen 375 PM 376 (1007)
T ss_pred cc
Confidence 53
No 141
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.75 E-value=0.26 Score=40.04 Aligned_cols=64 Identities=20% Similarity=0.229 Sum_probs=47.3
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcE
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQT 160 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~ 160 (196)
...|-|-+.|+.- -..|..+|++||.|.+.... .+ -.+.+|.|.+..+|++||. .||..|+|..
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~---~n---gNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP---SN---GNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecC---CC---CceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 3456666777653 35577899999998775433 23 3489999999999999995 5888887753
No 142
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.68 E-value=0.48 Score=30.29 Aligned_cols=67 Identities=16% Similarity=0.353 Sum_probs=38.6
Q ss_pred EEEEc-CCCccCcHHHHHHhhccCCC-----eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 91 IILVT-GVHEEAQEDDLQNVFGEYGE-----IRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 91 ~l~V~-nLp~~~te~~L~~~F~~~G~-----i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
++||. +--..++..+|..++...+. |-.|.|. ..|+||+-.. +.|..++..|++..+.|++|+|.
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 35552 22335788889888887644 4456665 3378998874 57899999999999999999998
Q ss_pred Ec
Q 043064 165 WA 166 (196)
Q Consensus 165 ~a 166 (196)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 65
No 143
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=93.20 E-value=0.072 Score=43.40 Aligned_cols=81 Identities=14% Similarity=0.015 Sum_probs=64.1
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
..+++|++++.+.+.+.++..++..+|.+..+.+.....+..+++++++.|...+.+..|+.....+.+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46789999999999999888899999987776665555678889999999999999999997655556666665554443
Q ss_pred c
Q 043064 168 S 168 (196)
Q Consensus 168 ~ 168 (196)
.
T Consensus 167 ~ 167 (285)
T KOG4210|consen 167 R 167 (285)
T ss_pred c
Confidence 3
No 144
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=92.97 E-value=0.23 Score=38.62 Aligned_cols=93 Identities=17% Similarity=0.206 Sum_probs=57.3
Q ss_pred CCCCCcCcccccCCCcHHHHHHhhhhcccCCCCCC-----------------C--------------CCCCCCCCCEEEE
Q 043064 46 APKKTKGRGFREEADSERHSRLADRNFESLGTDGG-----------------P--------------GPQRSIEGWIILV 94 (196)
Q Consensus 46 ~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~--------------~~~~~~~~~~l~V 94 (196)
.+++++|++|+.|.+ ...+..+...++.....+. . ..........+++
T Consensus 152 ~~~~~~g~~~v~f~~-~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (306)
T COG0724 152 ETGKSRGFAFVEFES-EESAEKAIEELNGKELEGRPLRVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYV 230 (306)
T ss_pred ccCccCceEEEEecC-HHHHHHHHHHcCCCeECCceeEeeccccccccccccccccchhhhccccccccccccccceeec
Confidence 356899999999994 4444434434432211110 0 0112334678899
Q ss_pred cCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEec
Q 043064 95 TGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYE 139 (196)
Q Consensus 95 ~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~ 139 (196)
.+++..++...+..+|..+|.+....+...........+.++.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (306)
T COG0724 231 GNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNE 275 (306)
T ss_pred cccccccchhHHHHhccccccceeeeccCCCCCcccccccccchh
Confidence 999999999999999999999977666554333333333333333
No 145
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.20 E-value=0.32 Score=42.62 Aligned_cols=70 Identities=11% Similarity=0.184 Sum_probs=53.0
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhcc--CCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC--ceeCCcEeE
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGE--YGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNG--GELLTQTLT 162 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~--~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~--~~l~g~~l~ 162 (196)
...+.|.|+-||..+..++++.||.. +-++++|.+-.+- -=||+|.+..+|+.|.+.|.- .+|.|++|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 34577778999999999999999985 6677888776442 148999999999999876643 236666654
Q ss_pred E
Q 043064 163 V 163 (196)
Q Consensus 163 v 163 (196)
.
T Consensus 246 A 246 (684)
T KOG2591|consen 246 A 246 (684)
T ss_pred h
Confidence 3
No 146
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.33 E-value=1.4 Score=27.67 Aligned_cols=55 Identities=22% Similarity=0.361 Sum_probs=42.0
Q ss_pred cCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEE
Q 043064 100 EAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163 (196)
Q Consensus 100 ~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v 163 (196)
.++-.+++..+..|+- .. |..++ + | -||.|.+..+|++|....++..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3577899999999953 33 33443 2 2 489999999999999999999887777654
No 147
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.00 E-value=0.96 Score=38.78 Aligned_cols=69 Identities=14% Similarity=0.249 Sum_probs=56.7
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccC-CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEY-GEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLT 158 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g 158 (196)
+++.|+|-.+|..++-.+|-.|...+ -.|..++|+++.. . ++=..+|.|.+..+|..-.+.+||..++.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~-p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM-P-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC-C-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 38899999999999999999998875 4688899998532 2 23346899999999999999999998653
No 148
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=90.50 E-value=0.26 Score=37.87 Aligned_cols=66 Identities=18% Similarity=0.247 Sum_probs=41.7
Q ss_pred cccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCCCCCCCCCCCCCCCEEEEcCCCcc-CcHHHHHHhhcc-CCCe
Q 043064 39 KSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEE-AQEDDLQNVFGE-YGEI 116 (196)
Q Consensus 39 r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~te~~L~~~F~~-~G~i 116 (196)
|+. .++.+||||||+|+ ....+.++...|+..-..+ +.|.+.=||+. .-+..+...+.. +..+
T Consensus 84 Rnk----rTGNSKgYAFVEFE-s~eVA~IaAETMNNYLl~e----------~lL~c~vmppe~~v~~~~~k~~~~~~~~~ 148 (214)
T KOG4208|consen 84 RNK----RTGNSKGYAFVEFE-SEEVAKIAAETMNNYLLME----------HLLECHVMPPEQKVEKNLKKVSGTPFKPG 148 (214)
T ss_pred ccc----ccCCcCceEEEEec-cHHHHHHHHHHhhhhhhhh----------heeeeEEeCchhhhhhhhhhhcCCcCCCC
Confidence 665 45689999999999 6777777777777765433 44666677776 444444433332 3444
Q ss_pred eEE
Q 043064 117 RNL 119 (196)
Q Consensus 117 ~~v 119 (196)
..+
T Consensus 149 ~~~ 151 (214)
T KOG4208|consen 149 KTV 151 (214)
T ss_pred Ccc
Confidence 333
No 149
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=86.77 E-value=0.33 Score=38.29 Aligned_cols=57 Identities=16% Similarity=0.136 Sum_probs=32.1
Q ss_pred CCCCcCCccCCCCCCCCCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCC
Q 043064 15 DLMDEDGTADVDASSSPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLG 76 (196)
Q Consensus 15 d~~ded~~~~~d~~~~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~ 76 (196)
++|.|++.++.--.-++...+-..++. .++.+|||+||.|.+ ..++..+...+++..
T Consensus 199 ed~~E~dL~eLf~~fg~i~rvylardK----~TG~~kGFAFVtF~s-RddA~rAI~~LnG~g 255 (270)
T KOG0122|consen 199 EDMREDDLEELFRPFGPITRVYLARDK----ETGLSKGFAFVTFES-RDDAARAIADLNGYG 255 (270)
T ss_pred cccChhHHHHHhhccCccceeEEEEcc----ccCcccceEEEEEec-HHHHHHHHHHccCcc
Confidence 344444444433333444444445555 466899999999994 444444445555544
No 150
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=85.58 E-value=3.3 Score=33.57 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=34.9
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCe-eEEEEeecCCCCCcceEEEEEecCH
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEI-RNLHLNLDRRTGFVKGYALIEYENF 141 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~v~i~~~~~~g~~~g~afv~f~~~ 141 (196)
..-|+|+||+.++.-.+|+..+.+.+-+ .++.|.- +.|-||++|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCc
Confidence 3459999999999999999999886532 3444432 256799999764
No 151
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.56 E-value=4.2 Score=36.12 Aligned_cols=83 Identities=20% Similarity=0.306 Sum_probs=61.4
Q ss_pred CCCCCCCCEEEEcCCCcc-CcHHHHHHhhccC----CCeeEEEEeecC----------CCCC------------------
Q 043064 83 PQRSIEGWIILVTGVHEE-AQEDDLQNVFGEY----GEIRNLHLNLDR----------RTGF------------------ 129 (196)
Q Consensus 83 ~~~~~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~i~~v~i~~~~----------~~g~------------------ 129 (196)
|+....+++|-|-||.|+ +...+|..+|+.| |.|.+|.|.... .+|.
T Consensus 168 ~~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ 247 (650)
T KOG2318|consen 168 PVLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDD 247 (650)
T ss_pred cccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccch
Confidence 344556788999999997 7889999999876 578888765432 0111
Q ss_pred -------------------cceEEEEEecCHHHHHHHHHHhCCceeCC--cEeEEEE
Q 043064 130 -------------------VKGYALIEYENFEEAQNAITAMNGGELLT--QTLTVDW 165 (196)
Q Consensus 130 -------------------~~g~afv~f~~~~~a~~al~~l~~~~l~g--~~l~v~~ 165 (196)
..=||.|+|.+...|....+.++|..+.. ..|-+.|
T Consensus 248 ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 248 EEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 01278899999999999999999999864 4444444
No 152
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=84.41 E-value=0.55 Score=36.83 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=19.2
Q ss_pred ccCCCCCCCcCcccccCCCcHHHHH
Q 043064 42 ITGGAPKKTKGRGFREEADSERHSR 66 (196)
Q Consensus 42 ~~gg~~~~~kG~gf~~~~~~~~~~~ 66 (196)
|+...+.|+||||||.|.+.+.+.|
T Consensus 45 itd~~t~rskGyGfVTf~d~~aa~r 69 (247)
T KOG0149|consen 45 ITDKNTGRSKGYGFVTFRDAEAATR 69 (247)
T ss_pred EeccCCccccceeeEEeecHHHHHH
Confidence 4455788999999999996655555
No 153
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=81.85 E-value=1.6 Score=32.98 Aligned_cols=75 Identities=21% Similarity=0.257 Sum_probs=51.0
Q ss_pred EEEEcCCCccCcH-----HHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCc-EeEEE
Q 043064 91 IILVTGVHEEAQE-----DDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQ-TLTVD 164 (196)
Q Consensus 91 ~l~V~nLp~~~te-----~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~-~l~v~ 164 (196)
.+.+.+|+..+-. .....+|.+|-+.....+++. .++.-|.|.+.+.|..|...++...|.|+ .++.-
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 3666677665322 334455665554444344432 34566899999999999999999999988 88888
Q ss_pred EcccCCC
Q 043064 165 WAFSNGP 171 (196)
Q Consensus 165 ~a~~~~~ 171 (196)
|+.+.-.
T Consensus 86 faQ~~~~ 92 (193)
T KOG4019|consen 86 FAQPGHP 92 (193)
T ss_pred EccCCCc
Confidence 8876543
No 154
>smart00361 RRM_1 RNA recognition motif.
Probab=79.54 E-value=1.1 Score=28.04 Aligned_cols=28 Identities=7% Similarity=0.019 Sum_probs=18.6
Q ss_pred CCCcCcccccCCCcHHHHHHhhhhcccCC
Q 043064 48 KKTKGRGFREEADSERHSRLADRNFESLG 76 (196)
Q Consensus 48 ~~~kG~gf~~~~~~~~~~~~~~~~~~~~~ 76 (196)
.+++|++||.|.+ ..++..+...+++..
T Consensus 34 ~~~rG~~fV~f~~-~~dA~~A~~~l~g~~ 61 (70)
T smart00361 34 NHKRGNVYITFER-SEDAARAIVDLNGRY 61 (70)
T ss_pred CCCcEEEEEEECC-HHHHHHHHHHhCCCE
Confidence 5788999999994 444444445555543
No 155
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=78.91 E-value=2.1 Score=35.37 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=20.6
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcccCCCCC
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFESLGTDG 79 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~ 79 (196)
.+.+||||||.+++..++.| +...+++....+
T Consensus 132 ERGSKGFGFVTmen~~dadR-ARa~LHgt~VEG 163 (376)
T KOG0125|consen 132 ERGSKGFGFVTMENPADADR-ARAELHGTVVEG 163 (376)
T ss_pred cCCCCccceEEecChhhHHH-HHHHhhcceeec
Confidence 56699999999996555444 334555544333
No 156
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=78.24 E-value=2.3 Score=28.35 Aligned_cols=16 Identities=44% Similarity=0.588 Sum_probs=7.1
Q ss_pred cccCCCC-CCCCCCcCC
Q 043064 6 VDALDFE-DDDLMDEDG 21 (196)
Q Consensus 6 ~~~~~~~-~~d~~ded~ 21 (196)
.|.++.+ +||++||+.
T Consensus 63 ~E~ldg~deddaede~n 79 (96)
T PF15387_consen 63 DEALDGDDEDDAEDENN 79 (96)
T ss_pred hhhccCccccccccccC
Confidence 3444444 444444444
No 157
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=77.42 E-value=13 Score=35.29 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.3
Q ss_pred ceEEEEEecCHHHHHHHHHHhCCceeC
Q 043064 131 KGYALIEYENFEEAQNAITAMNGGELL 157 (196)
Q Consensus 131 ~g~afv~f~~~~~a~~al~~l~~~~l~ 157 (196)
+||.||+=........||+.+-+....
T Consensus 210 kGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 210 KGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred ceeEEEEechhHHHHHHHhhhhhheec
Confidence 789999998899999999988776655
No 158
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.20 E-value=5.5 Score=33.87 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=46.1
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCC-eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHH
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGE-IRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITA 150 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~ 150 (196)
=.+.|-|.++|.....++|...|..|+. --.|.|+-+ -++|..|.+...|..||-.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 4688999999999888999999999864 345677655 3799999999999999853
No 159
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=74.40 E-value=1 Score=32.79 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=22.9
Q ss_pred CCCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhc
Q 043064 30 SPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNF 72 (196)
Q Consensus 30 ~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~ 72 (196)
.++..+..+++. .+.+++|||||.|.+. .++..+...+
T Consensus 59 G~I~~v~i~~d~----~tg~~kGfaFV~F~~~-e~A~~Al~~l 96 (144)
T PLN03134 59 GDVVDAKVIVDR----ETGRSRGFGFVNFNDE-GAATAAISEM 96 (144)
T ss_pred CCeEEEEEEecC----CCCCcceEEEEEECCH-HHHHHHHHHc
Confidence 344445555554 4568999999999954 4444343333
No 160
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=73.21 E-value=2.7 Score=34.24 Aligned_cols=41 Identities=27% Similarity=0.380 Sum_probs=28.1
Q ss_pred CCCCCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcc
Q 043064 28 SSSPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFE 73 (196)
Q Consensus 28 ~~~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~ 73 (196)
..++...+..+++.+|| +++||+|++|. .+.+...+-....
T Consensus 124 ~YG~IkrirlV~d~vTg----kskGYAFIeye-~erdm~~AYK~ad 164 (335)
T KOG0113|consen 124 KYGPIKRIRLVRDKVTG----KSKGYAFIEYE-HERDMKAAYKDAD 164 (335)
T ss_pred hcCcceeEEEeeecccC----CccceEEEEec-cHHHHHHHHHhcc
Confidence 34566677778887554 89999999999 5555554443333
No 161
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=71.98 E-value=1.2 Score=29.88 Aligned_cols=13 Identities=8% Similarity=0.018 Sum_probs=3.0
Q ss_pred CCCCCCCcccccc
Q 043064 28 SSSPRAPQPKLKS 40 (196)
Q Consensus 28 ~~~~~~~~~~~r~ 40 (196)
.+-|+........
T Consensus 39 de~p~p~fgea~~ 51 (101)
T PF09026_consen 39 DEVPVPEFGEAMA 51 (101)
T ss_dssp -------HHHHHH
T ss_pred ccccchhHHHHHh
Confidence 3455555555544
No 162
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=71.54 E-value=13 Score=30.27 Aligned_cols=80 Identities=14% Similarity=0.186 Sum_probs=57.0
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecC-------CCCCcceEEEEEecCHHHHHHH----HHHhCCc--
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDR-------RTGFVKGYALIEYENFEEAQNA----ITAMNGG-- 154 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-------~~g~~~g~afv~f~~~~~a~~a----l~~l~~~-- 154 (196)
..+.|.+.|+...++-..+...|-+||+|++|.++.+. ...+...-..+-|-+.+.|-.- ++.|.-.
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 35668889999999999999999999999999998664 1122334567888888776543 2333322
Q ss_pred eeCCcEeEEEEcc
Q 043064 155 ELLTQTLTVDWAF 167 (196)
Q Consensus 155 ~l~g~~l~v~~a~ 167 (196)
.|....|.|.|..
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 3677788887765
No 163
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=70.60 E-value=46 Score=30.38 Aligned_cols=70 Identities=11% Similarity=0.200 Sum_probs=49.6
Q ss_pred EEEEc-CCCccCcHHHHHHhhccCCCee-----EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 91 IILVT-GVHEEAQEDDLQNVFGEYGEIR-----NLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 91 ~l~V~-nLp~~~te~~L~~~F~~~G~i~-----~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
++||. +-...++...|..++..-+.|. .|.|. ..|.||+.. ...|...+..|++..+.|+.|.|.
T Consensus 488 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--------~~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 558 (629)
T PRK11634 488 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF--------ASHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQ 558 (629)
T ss_pred EEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe--------CCceEEEcC-hhhHHHHHHHhccccccCCceEEE
Confidence 45542 2233578888888887655443 35554 347899887 567888999999999999999999
Q ss_pred EcccC
Q 043064 165 WAFSN 169 (196)
Q Consensus 165 ~a~~~ 169 (196)
.+...
T Consensus 559 ~~~~~ 563 (629)
T PRK11634 559 LLGDA 563 (629)
T ss_pred ECCCC
Confidence 87533
No 164
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=64.20 E-value=3.5 Score=32.26 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=22.7
Q ss_pred CCCCCcCcccccCCCcHHHHHHhhhhcccCCCCC
Q 043064 46 APKKTKGRGFREEADSERHSRLADRNFESLGTDG 79 (196)
Q Consensus 46 ~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~ 79 (196)
...+++|||||+|. ...++.++...++...+.+
T Consensus 47 esqkHRgFgFVefe-~aEDAaaAiDNMnesEL~G 79 (298)
T KOG0111|consen 47 ESQKHRGFGFVEFE-EAEDAAAAIDNMNESELFG 79 (298)
T ss_pred hcccccceeEEEee-ccchhHHHhhcCchhhhcc
Confidence 46689999999999 4445555556666554444
No 165
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=61.12 E-value=1.1 Score=37.77 Aligned_cols=74 Identities=14% Similarity=0.057 Sum_probs=52.8
Q ss_pred CEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEccc
Q 043064 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168 (196)
Q Consensus 90 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~ 168 (196)
.+|+|.+|+..+...++-++|..+|.+....|. .+....+|-|.|........|+. ++|..+.-+...+....|
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCc
Confidence 679999999999999999999999998776553 34344567788887777777774 566665544444433333
No 166
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=61.07 E-value=7.1 Score=31.25 Aligned_cols=29 Identities=31% Similarity=0.352 Sum_probs=19.2
Q ss_pred CCCCCcCcccccCCCcHHHHHHhhhhcccC
Q 043064 46 APKKTKGRGFREEADSERHSRLADRNFESL 75 (196)
Q Consensus 46 ~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~ 75 (196)
.+.+++|||||+|.+.....+ +...+++-
T Consensus 227 RTgKSkgygfVSf~~pad~~r-Amrem~gk 255 (290)
T KOG0226|consen 227 RTGKSKGYGFVSFRDPADYVR-AMREMNGK 255 (290)
T ss_pred cccccccceeeeecCHHHHHH-HHHhhccc
Confidence 567999999999995444444 33444443
No 167
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=59.79 E-value=7.1 Score=29.73 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=22.0
Q ss_pred CCCCCcccccccccCCCCCCCcCcccccCCC
Q 043064 30 SPRAPQPKLKSAITGGAPKKTKGRGFREEAD 60 (196)
Q Consensus 30 ~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~ 60 (196)
+.+..+-.+|+. .+++++||+|..|++
T Consensus 60 Ge~vdinLiRDk----~TGKSKGFaFLcYED 86 (219)
T KOG0126|consen 60 GEIVDINLIRDK----KTGKSKGFAFLCYED 86 (219)
T ss_pred CceEEEEEEecC----CCCcccceEEEEecC
Confidence 445678888888 677999999999984
No 168
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=55.46 E-value=15 Score=25.67 Aligned_cols=55 Identities=15% Similarity=0.414 Sum_probs=28.9
Q ss_pred EEEEcCCCcc---------CcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecC-HHHHHHHH
Q 043064 91 IILVTGVHEE---------AQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN-FEEAQNAI 148 (196)
Q Consensus 91 ~l~V~nLp~~---------~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~-~~~a~~al 148 (196)
++.|.|++.. ++.+.|.+.|+.|.+++ +..+.+. .-+.|+++|.|.+ ..-...|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHH
Confidence 4566777543 35588999999998765 4444443 2457899999974 45555555
No 169
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=55.06 E-value=26 Score=21.63 Aligned_cols=19 Identities=32% Similarity=0.621 Sum_probs=15.8
Q ss_pred HHHHHhhccCCCeeEEEEe
Q 043064 104 DDLQNVFGEYGEIRNLHLN 122 (196)
Q Consensus 104 ~~L~~~F~~~G~i~~v~i~ 122 (196)
.+|+.+|+..|.|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6799999999999776654
No 170
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=52.41 E-value=2.1 Score=37.75 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=50.4
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEe
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTL 161 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l 161 (196)
.+.|++.|++++++-.+|..+.+.+--+..+.+.....-.+...+.+|+|.---...-|+-.||+..+....+
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 5679999999999999999999987555555443322222334567888886666666666778776655443
No 171
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=51.88 E-value=17 Score=31.63 Aligned_cols=46 Identities=26% Similarity=0.257 Sum_probs=29.3
Q ss_pred CCCCCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCCC
Q 043064 28 SSSPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTD 78 (196)
Q Consensus 28 ~~~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~ 78 (196)
..+++++++..-+. -+++.+||||++|.+.+. +..+...+++....
T Consensus 41 ~~g~v~s~~~v~D~----~tG~~~G~~f~~~~~~~~-~~~a~~~lNg~~~~ 86 (435)
T KOG0108|consen 41 GVGPVLSFRLVYDR----ETGKPKGFGFCEFTDEET-AERAIRNLNGAEFN 86 (435)
T ss_pred ccCccceeeecccc----cCCCcCceeeEecCchhh-HHHHHHhcCCcccC
Confidence 34566677766666 455899999999994444 44444555554333
No 172
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=50.50 E-value=35 Score=21.37 Aligned_cols=61 Identities=18% Similarity=0.180 Sum_probs=38.6
Q ss_pred HHHHhhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEccc
Q 043064 105 DLQNVFGEYG-EIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168 (196)
Q Consensus 105 ~L~~~F~~~G-~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~ 168 (196)
+|.+-|...| +|..+.-+..+.+......-||+.....+ ..+.++=..|.++.++|.....
T Consensus 3 ~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 3 EIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCCC
Confidence 4555566554 56666656655566666777888775444 2223455668888888886644
No 173
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.99 E-value=2.9 Score=35.89 Aligned_cols=78 Identities=6% Similarity=-0.131 Sum_probs=56.1
Q ss_pred CEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEccc
Q 043064 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168 (196)
Q Consensus 90 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~ 168 (196)
.+.|+..||...++.++.-+|..||-|..+.+...-..+...-.+|++-.. ..+..||.-+.-..+.|..++|..+..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 345678889999999999999999998887765443444555567776653 456677766666667777788876643
No 174
>PRK11901 hypothetical protein; Reviewed
Probab=48.59 E-value=75 Score=26.46 Aligned_cols=64 Identities=19% Similarity=0.283 Sum_probs=42.9
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEE--EEecCHHHHHHHHHHhCCce
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYAL--IEYENFEEAQNAITAMNGGE 155 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~af--v~f~~~~~a~~al~~l~~~~ 155 (196)
....+|.|..+. .++.|..|..+++ +..+.+.....+|+. .|.. -.|.+.++|..|+..|....
T Consensus 243 ~~~YTLQL~Aas---~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 243 ASHYTLQLSSAS---RSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCCeEEEeecCC---CHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 345667776654 4677888877764 455666555556653 3443 38999999999999887543
No 175
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=45.04 E-value=50 Score=21.94 Aligned_cols=25 Identities=20% Similarity=0.514 Sum_probs=20.9
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhh
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVF 110 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F 110 (196)
....++|-|+|||..+.++.|++.+
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeE
Confidence 4457889999999999999998654
No 176
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=45.04 E-value=33 Score=29.07 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=44.4
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCC-eeEEEEeecC---CCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGE-IRNLHLNLDR---RTGFVKGYALIEYENFEEAQNAITAMNGGEL 156 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~~~~---~~g~~~g~afv~f~~~~~a~~al~~l~~~~l 156 (196)
-..|.|.+||+.+++.+|.+....+-. +....+.... .+.. .+.+||.|...++...-...++|+.+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~-ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHK-YSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhh-hhhhhhccccHHHHHHHHhhCCceEE
Confidence 356889999999999998887776532 1111121110 1112 46789999999987777777888773
No 177
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=41.59 E-value=20 Score=29.19 Aligned_cols=33 Identities=33% Similarity=0.551 Sum_probs=25.4
Q ss_pred CEEEEcCCCc------------cCcHHHHHHhhccCCCeeEEEEe
Q 043064 90 WIILVTGVHE------------EAQEDDLQNVFGEYGEIRNLHLN 122 (196)
Q Consensus 90 ~~l~V~nLp~------------~~te~~L~~~F~~~G~i~~v~i~ 122 (196)
.+||+.+||- -.++.-|+..|..||.|..|.|+
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 4577777653 24678899999999999988764
No 178
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=38.29 E-value=56 Score=20.65 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=37.5
Q ss_pred HHHHHhhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 104 DDLQNVFGEYG-EIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 104 ~~L~~~F~~~G-~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
.+|.+.|...| ++..+.-+..+.+..+...-+|+.....+-.. .|+-..|+|+.+.|.-..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 35666777766 46667666665556555666777654322111 355566888998887543
No 179
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=38.04 E-value=25 Score=27.88 Aligned_cols=10 Identities=40% Similarity=0.577 Sum_probs=5.5
Q ss_pred ccccccCCCC
Q 043064 3 NAEVDALDFE 12 (196)
Q Consensus 3 ~~~~~~~~~~ 12 (196)
++|+++.+|+
T Consensus 36 ~Eee~D~ef~ 45 (240)
T PF05764_consen 36 QEEEDDEEFE 45 (240)
T ss_pred cccCCCcccc
Confidence 3455555555
No 180
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=33.06 E-value=35 Score=27.04 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=27.7
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRN 118 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~ 118 (196)
......+||+-|||..+|++.|.++.++.|-+..
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 3445677999999999999999999998875443
No 181
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=31.75 E-value=1.2e+02 Score=19.67 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=21.5
Q ss_pred cceEEEEEecCHHHHHHHHHHhCCce
Q 043064 130 VKGYALIEYENFEEAQNAITAMNGGE 155 (196)
Q Consensus 130 ~~g~afv~f~~~~~a~~al~~l~~~~ 155 (196)
.+||-||+=.+..+...|+..+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 48999999999999999998776654
No 182
>KOG4032 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.44 E-value=46 Score=25.24 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=9.6
Q ss_pred CCCCCCCCcCCccCCCCCCCC
Q 043064 11 FEDDDLMDEDGTADVDASSSP 31 (196)
Q Consensus 11 ~~~~d~~ded~~~~~d~~~~~ 31 (196)
+||++++|+.+++++++..+.
T Consensus 135 dEDdedvd~~dd~evdae~~~ 155 (184)
T KOG4032|consen 135 DEDDEDVDEEDDEEVDAEDDE 155 (184)
T ss_pred cccccccccchhhhhcccCCC
Confidence 334444444444444444444
No 183
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=26.43 E-value=47 Score=18.12 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=10.2
Q ss_pred ccCcHHHHHHhhccCC
Q 043064 99 EEAQEDDLQNVFGEYG 114 (196)
Q Consensus 99 ~~~te~~L~~~F~~~G 114 (196)
.++++.+|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3678999999998764
No 184
>KOG1631 consensus Translocon-associated complex TRAP, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.26 E-value=55 Score=25.85 Aligned_cols=9 Identities=44% Similarity=0.342 Sum_probs=4.5
Q ss_pred cccccCCCC
Q 043064 4 AEVDALDFE 12 (196)
Q Consensus 4 ~~~~~~~~~ 12 (196)
.|+|.|+.|
T Consensus 27 ~eDD~v~~e 35 (261)
T KOG1631|consen 27 VEDDLVDGE 35 (261)
T ss_pred ccccccccc
Confidence 344555555
No 185
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=26.21 E-value=1e+02 Score=23.54 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=30.3
Q ss_pred HHHHHhhccCCCeeEEEEeecCCCC--CcceEEEEEecCHHHHHHHHHH
Q 043064 104 DDLQNVFGEYGEIRNLHLNLDRRTG--FVKGYALIEYENFEEAQNAITA 150 (196)
Q Consensus 104 ~~L~~~F~~~G~i~~v~i~~~~~~g--~~~g~afv~f~~~~~a~~al~~ 150 (196)
++|..+-+ |.+..+.+..+. .+ ..+|-.||+|.+.+.|.++++.
T Consensus 124 ~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 124 DDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh
Confidence 34444444 677777765443 22 4567789999999999998864
No 186
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=26.14 E-value=88 Score=25.56 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=23.9
Q ss_pred EEEEecCHHHHHHHHHHhCCceeCCcEeEEEEccc
Q 043064 134 ALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168 (196)
Q Consensus 134 afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~ 168 (196)
|||.|.+..+|+.|++.+.... ...+.+..|-.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC
Confidence 6999999999999998654433 34456666643
No 187
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=25.75 E-value=1.7e+02 Score=19.26 Aligned_cols=46 Identities=13% Similarity=0.141 Sum_probs=28.4
Q ss_pred EEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEec
Q 043064 91 IILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYE 139 (196)
Q Consensus 91 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~ 139 (196)
-|||+|++..+-+.-...+....+.-.-+ ++....+ ..||.|-.+-
T Consensus 27 GVyVg~~s~rVRe~lW~~v~~~~~~G~a~-m~~~~~n--eqG~~~~t~G 72 (86)
T PF09707_consen 27 GVYVGNVSARVRERLWERVTEWIGDGSAV-MVWSDNN--EQGFDFRTLG 72 (86)
T ss_pred CcEEcCCCHHHHHHHHHHHHhhCCCccEE-EEEccCC--CCCEEEEEeC
Confidence 39999999988877666555544333333 3332222 5788887773
No 188
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=22.64 E-value=1.2e+02 Score=18.89 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=20.1
Q ss_pred EEEEEecCHHHHHHHHHHhCCceeC
Q 043064 133 YALIEYENFEEAQNAITAMNGGELL 157 (196)
Q Consensus 133 ~afv~f~~~~~a~~al~~l~~~~l~ 157 (196)
+.+|.|.+...|.+|-+.|....+.
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCc
Confidence 5789999999999998877765443
No 189
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=21.67 E-value=2.2e+02 Score=24.67 Aligned_cols=41 Identities=15% Similarity=0.339 Sum_probs=30.7
Q ss_pred CCCCCCCCCEEEEcCCCcc-CcHHHHHHhhccC----CCeeEEEEe
Q 043064 82 GPQRSIEGWIILVTGVHEE-AQEDDLQNVFGEY----GEIRNLHLN 122 (196)
Q Consensus 82 ~~~~~~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~i~~v~i~ 122 (196)
.|....+...|-|-||.|+ +...+|...|+.| |.|..|.|.
T Consensus 139 ~pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iy 184 (622)
T COG5638 139 VPEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIY 184 (622)
T ss_pred ccCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEec
Confidence 3444566788999999997 7778999888865 567767654
No 190
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=21.64 E-value=55 Score=30.73 Aligned_cols=8 Identities=38% Similarity=0.708 Sum_probs=3.8
Q ss_pred HHHHhhcc
Q 043064 105 DLQNVFGE 112 (196)
Q Consensus 105 ~L~~~F~~ 112 (196)
.|-++|..
T Consensus 740 ~La~~Fk~ 747 (784)
T PF04931_consen 740 QLAAIFKE 747 (784)
T ss_pred HHHHHHHH
Confidence 34445543
No 191
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.43 E-value=2e+02 Score=25.48 Aligned_cols=59 Identities=14% Similarity=0.299 Sum_probs=42.0
Q ss_pred EEcCCCccC---cHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEe
Q 043064 93 LVTGVHEEA---QEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTL 161 (196)
Q Consensus 93 ~V~nLp~~~---te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l 161 (196)
.||||+.-. ....+.++=.+||+|-.+++-.- -.|.-.+.+.|+.|+.. |+..+.+++.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 367776543 34556666668999987766321 36788899999999965 7888888775
Done!