Query 043064
Match_columns 196
No_of_seqs 203 out of 2109
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 22:00:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043064.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043064hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rk8_A CG8781-PA, CG8781-PA pr 99.9 3E-26 1E-30 170.8 12.1 93 80-172 63-155 (165)
2 4fxv_A ELAV-like protein 1; RN 99.9 3.9E-23 1.3E-27 141.3 11.6 82 87-168 17-98 (99)
3 3ex7_B RNA-binding protein 8A; 99.9 4E-23 1.4E-27 146.9 10.6 93 80-172 13-105 (126)
4 2kn4_A Immunoglobulin G-bindin 99.9 3.3E-22 1.1E-26 147.5 13.8 123 49-172 11-153 (158)
5 2dgo_A Cytotoxic granule-assoc 99.9 5.1E-21 1.7E-25 133.9 16.0 90 83-172 9-98 (115)
6 2fy1_A RNA-binding motif prote 99.9 1.4E-21 4.7E-26 137.3 13.1 86 86-172 4-89 (116)
7 2dgs_A DAZ-associated protein 99.9 5.1E-21 1.7E-25 130.4 13.3 87 85-172 6-92 (99)
8 2cq0_A Eukaryotic translation 99.9 5.2E-21 1.8E-25 131.3 13.5 88 85-172 11-98 (103)
9 1whw_A Hypothetical protein ri 99.9 4.1E-21 1.4E-25 130.9 12.8 88 85-172 4-91 (99)
10 3s8s_A Histone-lysine N-methyl 99.9 2.8E-21 9.5E-26 134.6 12.2 83 87-169 4-86 (110)
11 2dnz_A Probable RNA-binding pr 99.9 4.4E-21 1.5E-25 129.7 12.6 86 87-172 3-88 (95)
12 2do4_A Squamous cell carcinoma 99.9 7.7E-21 2.7E-25 129.7 13.8 89 83-172 11-99 (100)
13 1p27_B RNA-binding protein 8A; 99.9 2.8E-21 9.4E-26 133.3 11.7 92 80-171 14-105 (106)
14 2lxi_A RNA-binding protein 10; 99.9 3.8E-22 1.3E-26 134.3 6.9 84 89-172 1-86 (91)
15 2dnm_A SRP46 splicing factor; 99.9 2.8E-21 9.5E-26 132.7 11.3 90 83-172 7-96 (103)
16 2cqd_A RNA-binding region cont 99.9 1.3E-20 4.3E-25 132.1 14.7 90 82-172 10-99 (116)
17 3bs9_A Nucleolysin TIA-1 isofo 99.9 3.8E-21 1.3E-25 127.9 11.3 84 87-170 4-87 (87)
18 2cqb_A Peptidyl-prolyl CIS-tra 99.9 4.7E-21 1.6E-25 131.2 11.6 88 85-172 8-95 (102)
19 3md1_A Nuclear and cytoplasmic 99.9 6.6E-21 2.3E-25 125.5 11.9 82 89-170 1-82 (83)
20 1x4h_A RNA-binding protein 28; 99.9 9.9E-21 3.4E-25 131.5 13.4 92 81-172 7-104 (111)
21 1x5u_A Splicing factor 3B subu 99.9 8.2E-21 2.8E-25 130.7 12.7 90 83-172 9-98 (105)
22 1x5t_A Splicing factor 3B subu 99.9 3.6E-21 1.2E-25 130.4 10.6 86 87-172 3-89 (96)
23 1oo0_B CG8781-PA, drosophila Y 99.9 4.8E-21 1.7E-25 133.0 11.3 93 80-172 17-109 (110)
24 2qfj_A FBP-interacting repress 99.9 7.8E-21 2.7E-25 146.1 13.2 125 47-172 66-208 (216)
25 3md3_A Nuclear and cytoplasmic 99.9 1.2E-20 4.2E-25 138.9 13.5 120 48-168 38-166 (166)
26 1h2v_Z 20 kDa nuclear CAP bind 99.9 1.1E-20 3.8E-25 139.1 13.2 88 86-173 36-123 (156)
27 2cpz_A CUG triplet repeat RNA- 99.9 1.6E-20 5.3E-25 131.5 13.3 87 86-172 22-108 (115)
28 1x5s_A Cold-inducible RNA-bind 99.9 9.3E-21 3.2E-25 129.8 11.8 88 85-172 8-95 (102)
29 2lkz_A RNA-binding protein 5; 99.9 2.6E-21 8.8E-26 131.2 8.8 84 85-168 5-94 (95)
30 2cph_A RNA binding motif prote 99.8 1.7E-20 5.7E-25 129.5 13.0 90 83-172 9-100 (107)
31 2do0_A HnRNP M, heterogeneous 99.8 6.3E-20 2.2E-24 128.0 16.1 87 85-172 11-97 (114)
32 1l3k_A Heterogeneous nuclear r 99.8 4.3E-21 1.5E-25 145.4 10.9 133 33-172 41-186 (196)
33 1u6f_A Tcubp1, RNA-binding pro 99.8 1.6E-20 5.6E-25 135.6 13.4 88 85-172 38-125 (139)
34 1x4c_A Splicing factor, argini 99.8 2.8E-20 9.6E-25 128.9 13.8 82 83-171 9-95 (108)
35 2d9p_A Polyadenylate-binding p 99.8 2.8E-20 9.6E-25 127.6 13.6 86 85-172 11-96 (103)
36 2dnh_A Bruno-like 5, RNA bindi 99.8 3.9E-20 1.3E-24 127.3 14.0 87 85-172 11-100 (105)
37 1wi8_A EIF-4B, eukaryotic tran 99.8 2.4E-20 8.3E-25 128.2 12.9 88 83-172 9-97 (104)
38 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.2E-20 4.2E-25 124.8 10.8 82 86-167 4-85 (85)
39 2dng_A Eukaryotic translation 99.8 4.3E-20 1.5E-24 126.7 13.9 86 85-172 11-96 (103)
40 2cpe_A RNA-binding protein EWS 99.8 2.2E-20 7.4E-25 130.3 12.5 89 84-172 10-106 (113)
41 2cpf_A RNA binding motif prote 99.8 1.4E-20 4.7E-25 128.0 11.1 86 87-172 3-91 (98)
42 2x1f_A MRNA 3'-END-processing 99.8 1.4E-20 4.9E-25 127.5 11.1 84 88-171 1-84 (96)
43 2cqc_A Arginine/serine-rich sp 99.8 2.1E-20 7.3E-25 126.2 11.9 84 85-168 11-94 (95)
44 2e5h_A Zinc finger CCHC-type a 99.8 2.6E-20 8.8E-25 125.6 11.9 83 85-167 12-94 (94)
45 2div_A TRNA selenocysteine ass 99.8 1.5E-20 5.1E-25 128.0 10.7 87 86-172 6-97 (99)
46 2dgp_A Bruno-like 4, RNA bindi 99.8 1.9E-20 6.4E-25 129.1 11.3 89 83-171 7-98 (106)
47 2cq3_A RNA-binding protein 9; 99.8 9E-20 3.1E-24 125.1 14.6 88 83-172 9-96 (103)
48 2cjk_A Nuclear polyadenylated 99.8 2E-21 7E-26 143.6 6.7 133 31-169 29-166 (167)
49 1b7f_A Protein (SXL-lethal pro 99.8 2.6E-20 9E-25 137.6 12.6 119 47-166 41-168 (168)
50 2dhg_A TRNA selenocysteine ass 99.8 2.1E-20 7.2E-25 128.4 11.2 87 85-172 5-93 (104)
51 2g4b_A Splicing factor U2AF 65 99.8 2.9E-20 9.9E-25 138.0 12.8 116 49-166 49-171 (172)
52 4a8x_A RNA-binding protein wit 99.8 1.7E-20 5.8E-25 124.9 10.3 85 87-171 2-87 (88)
53 2la6_A RNA-binding protein FUS 99.8 4E-20 1.4E-24 126.0 12.3 85 83-167 7-99 (99)
54 2jrs_A RNA-binding protein 39; 99.8 2.3E-20 7.7E-25 129.5 11.2 86 85-170 22-107 (108)
55 4f25_A Polyadenylate-binding p 99.8 2.5E-20 8.5E-25 130.6 11.5 82 89-172 5-86 (115)
56 3p5t_L Cleavage and polyadenyl 99.8 2.9E-21 1E-25 129.5 6.4 83 90-172 2-86 (90)
57 4f02_A Polyadenylate-binding p 99.8 3.1E-21 1.1E-25 148.9 7.4 134 30-170 40-182 (213)
58 3beg_B Splicing factor, argini 99.8 2.9E-21 1E-25 135.4 6.1 82 83-171 10-96 (115)
59 2dgu_A Heterogeneous nuclear r 99.8 8.6E-20 2.9E-24 125.3 13.2 81 85-173 7-87 (103)
60 3ns6_A Eukaryotic translation 99.8 7.6E-21 2.6E-25 130.1 7.6 82 88-169 5-93 (100)
61 2lea_A Serine/arginine-rich sp 99.8 7.1E-21 2.4E-25 137.2 7.7 90 83-172 41-130 (135)
62 2dh8_A DAZ-associated protein 99.8 4E-20 1.4E-24 127.3 11.0 88 84-172 11-98 (105)
63 2cqg_A TDP-43, TAR DNA-binding 99.8 1.6E-19 5.6E-24 123.7 14.0 86 85-172 11-96 (103)
64 3ucg_A Polyadenylate-binding p 99.8 4.9E-20 1.7E-24 122.9 11.0 82 89-171 6-87 (89)
65 2dgv_A HnRNP M, heterogeneous 99.8 5.9E-20 2E-24 123.4 11.4 87 84-172 3-89 (92)
66 2yh0_A Splicing factor U2AF 65 99.8 5.3E-20 1.8E-24 139.5 12.6 122 48-171 48-196 (198)
67 2kxn_B Transformer-2 protein h 99.8 2.7E-20 9.3E-25 133.1 9.9 87 85-171 42-128 (129)
68 2cqi_A Nucleolysin TIAR; RNA r 99.8 2E-19 6.7E-24 123.4 13.8 86 84-171 10-95 (103)
69 3ulh_A THO complex subunit 4; 99.8 7.4E-20 2.5E-24 126.3 11.7 84 83-167 23-106 (107)
70 1x4a_A Splicing factor, argini 99.8 2.1E-19 7.2E-24 124.5 13.6 86 83-171 16-101 (109)
71 1fxl_A Paraneoplastic encephal 99.8 6.3E-20 2.2E-24 135.2 11.5 119 47-166 40-167 (167)
72 2dgw_A Probable RNA-binding pr 99.8 1.7E-19 5.9E-24 120.9 12.5 84 86-172 7-90 (91)
73 2ywk_A Putative RNA-binding pr 99.8 6.7E-20 2.3E-24 123.8 10.5 84 84-168 11-94 (95)
74 2cpi_A CCR4-NOT transcription 99.8 9E-20 3.1E-24 126.9 11.3 88 85-172 11-104 (111)
75 3s7r_A Heterogeneous nuclear r 99.8 1.3E-19 4.4E-24 120.5 11.6 81 85-166 7-87 (87)
76 2dis_A Unnamed protein product 99.8 9.8E-20 3.3E-24 126.1 11.4 87 86-172 5-95 (109)
77 2m2b_A RNA-binding protein 10; 99.8 4.6E-20 1.6E-24 132.1 9.4 89 83-172 17-111 (131)
78 1p1t_A Cleavage stimulation fa 99.8 2.4E-20 8.1E-25 128.1 7.5 85 87-171 6-90 (104)
79 2dgx_A KIAA0430 protein; RRM d 99.8 1.2E-19 4.3E-24 123.0 10.8 82 87-171 7-92 (96)
80 3nmr_A Cugbp ELAV-like family 99.8 1.3E-19 4.4E-24 134.6 11.8 133 31-167 29-175 (175)
81 2khc_A Testis-specific RNP-typ 99.8 1E-19 3.4E-24 127.8 10.6 83 85-167 36-118 (118)
82 2cqp_A RNA-binding protein 12; 99.8 1.1E-19 3.9E-24 123.4 10.4 84 86-169 12-95 (98)
83 1x4b_A Heterogeneous nuclear r 99.8 1.3E-19 4.4E-24 126.9 10.7 84 88-172 26-109 (116)
84 3n9u_C Cleavage and polyadenyl 99.8 1.3E-19 4.3E-24 133.7 10.7 83 88-170 54-138 (156)
85 1s79_A Lupus LA protein; RRM, 99.8 9E-20 3.1E-24 125.4 9.1 82 85-168 7-88 (103)
86 1sjq_A Polypyrimidine tract-bi 99.8 9.5E-20 3.3E-24 125.2 9.1 81 86-172 13-95 (105)
87 1why_A Hypothetical protein ri 99.8 3.3E-19 1.1E-23 121.0 11.7 82 85-172 13-96 (97)
88 2fc8_A NCL protein; structure 99.8 5.8E-19 2E-23 120.7 13.0 86 84-172 10-95 (102)
89 2jwn_A Embryonic polyadenylate 99.8 2.1E-19 7.3E-24 127.2 11.1 82 89-171 36-117 (124)
90 2cq1_A PTB-like protein L; RRM 99.8 7.7E-19 2.6E-23 120.3 13.5 82 85-172 11-94 (101)
91 1fje_B Nucleolin RBD12, protei 99.8 1.6E-19 5.3E-24 134.6 10.7 117 47-170 50-175 (175)
92 2kt5_A RNA and export factor-b 99.8 6.8E-19 2.3E-23 124.7 13.5 87 85-172 31-117 (124)
93 1x5o_A RNA binding motif, sing 99.8 6.2E-19 2.1E-23 123.0 13.0 84 85-169 21-112 (114)
94 2dgt_A RNA-binding protein 30; 99.8 6.3E-19 2.1E-23 118.4 12.4 80 85-172 6-85 (92)
95 1x4d_A Matrin 3; structural ge 99.8 2.3E-19 8E-24 123.0 10.4 80 85-170 11-93 (102)
96 1wez_A HnRNP H', FTP-3, hetero 99.8 4.1E-19 1.4E-23 121.9 11.5 84 85-171 11-94 (102)
97 3pgw_S U1-70K; protein-RNA com 99.8 3.3E-19 1.1E-23 151.3 13.3 89 86-174 99-187 (437)
98 2dnq_A RNA-binding protein 4B; 99.8 5.7E-19 1.9E-23 118.2 11.8 79 86-172 5-83 (90)
99 2fc9_A NCL protein; structure 99.8 7.8E-19 2.7E-23 119.9 12.7 83 85-171 11-93 (101)
100 1x4e_A RNA binding motif, sing 99.8 3.3E-20 1.1E-24 122.8 5.3 81 87-167 3-83 (85)
101 2ek1_A RNA-binding protein 12; 99.8 1.1E-19 3.8E-24 122.7 8.1 81 88-168 14-94 (95)
102 2j76_E EIF-4B, EIF4B, eukaryot 99.8 8.3E-20 2.8E-24 124.8 7.1 84 85-170 15-99 (100)
103 2cq4_A RNA binding motif prote 99.8 1.8E-19 6.1E-24 125.8 8.9 83 88-171 24-106 (114)
104 2mss_A Protein (musashi1); RNA 99.8 7.9E-20 2.7E-24 118.2 6.6 75 91-166 1-75 (75)
105 3r27_A HnRNP L, heterogeneous 99.8 3.3E-19 1.1E-23 121.5 9.9 79 85-169 17-97 (100)
106 2rs2_A Musashi-1, RNA-binding 99.8 3.2E-19 1.1E-23 123.8 10.0 86 85-171 21-106 (109)
107 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 5.9E-19 2E-23 127.2 11.5 82 85-166 59-140 (140)
108 3q2s_C Cleavage and polyadenyl 99.8 1.3E-19 4.5E-24 141.5 8.5 81 88-168 67-149 (229)
109 2ad9_A Polypyrimidine tract-bi 99.8 9.5E-19 3.2E-23 123.0 11.8 81 86-172 28-110 (119)
110 2err_A Ataxin-2-binding protei 99.8 5E-19 1.7E-23 122.8 10.4 85 84-170 24-108 (109)
111 2wbr_A GW182, gawky, LD47780P; 99.8 2.7E-19 9.1E-24 118.3 8.4 73 89-167 7-79 (89)
112 2ki2_A SS-DNA binding protein 99.8 4.6E-20 1.6E-24 123.5 4.7 82 90-172 2-83 (90)
113 2hvz_A Splicing factor, argini 99.8 3.9E-19 1.3E-23 121.4 9.4 77 90-171 1-77 (101)
114 2cpx_A Hypothetical protein FL 99.8 1.2E-19 4E-24 126.9 6.9 87 86-172 22-108 (115)
115 2nlw_A Eukaryotic translation 99.8 5.3E-19 1.8E-23 121.8 10.0 83 86-170 12-101 (105)
116 2cpj_A Non-POU domain-containi 99.8 1.4E-18 4.8E-23 118.3 11.9 83 84-172 10-92 (99)
117 2dnp_A RNA-binding protein 14; 99.8 1E-18 3.5E-23 116.9 10.9 80 85-172 5-84 (90)
118 1wex_A Hypothetical protein (r 99.8 1.8E-18 6.1E-23 119.1 12.2 82 85-172 11-94 (104)
119 3smz_A Protein raver-1, ribonu 99.8 6.7E-19 2.3E-23 141.0 11.4 124 46-171 132-266 (284)
120 1x4g_A Nucleolysin TIAR; struc 99.8 1.1E-18 3.9E-23 120.8 11.1 81 86-172 22-102 (109)
121 2a3j_A U1 small nuclear ribonu 99.8 7.4E-19 2.5E-23 125.2 10.2 84 85-171 25-112 (127)
122 1wg5_A Heterogeneous nuclear r 99.8 2E-18 6.7E-23 118.7 12.0 84 85-170 11-95 (104)
123 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.6E-19 5.6E-24 117.1 6.2 77 90-167 1-77 (77)
124 2cpy_A RNA-binding protein 12; 99.8 6.5E-19 2.2E-23 123.1 9.7 83 86-170 12-95 (114)
125 2cpd_A Apobec-1 stimulating pr 99.8 4.1E-18 1.4E-22 115.9 13.4 79 85-171 11-91 (99)
126 2ytc_A PRE-mRNA-splicing facto 99.8 1.3E-18 4.5E-23 115.0 10.4 79 83-167 6-85 (85)
127 2ghp_A U4/U6 snRNA-associated 99.8 6.1E-19 2.1E-23 141.8 10.4 121 48-170 156-292 (292)
128 1fj7_A Nucleolin RBD1, protein 99.8 1.2E-19 4.1E-24 124.0 4.7 85 86-172 14-98 (101)
129 2e5j_A Methenyltetrahydrofolat 99.8 2E-18 7E-23 117.1 10.8 82 85-171 15-96 (97)
130 2i2y_A Fusion protein consists 99.8 2E-18 6.8E-23 126.2 11.5 81 85-170 69-149 (150)
131 3smz_A Protein raver-1, ribonu 99.8 1.8E-18 6.2E-23 138.5 12.3 123 48-171 54-177 (284)
132 2lcw_A RNA-binding protein FUS 99.6 1.5E-20 5.1E-25 131.8 0.0 87 86-172 4-98 (116)
133 2db1_A Heterogeneous nuclear r 99.8 1.4E-18 4.7E-23 122.3 10.0 84 85-170 13-99 (118)
134 1nu4_A U1A RNA binding domain; 99.8 5.7E-19 1.9E-23 119.6 7.8 84 85-171 4-91 (97)
135 2kvi_A Nuclear polyadenylated 99.8 1E-18 3.5E-23 118.4 8.9 79 86-172 7-86 (96)
136 1fjc_A Nucleolin RBD2, protein 99.8 1.2E-18 4.2E-23 117.8 9.2 83 85-172 12-94 (96)
137 2cqh_A IGF-II mRNA-binding pro 99.8 1.3E-18 4.4E-23 117.1 9.2 79 86-171 5-85 (93)
138 1wel_A RNA-binding protein 12; 99.8 5.4E-19 1.8E-23 125.3 7.2 84 86-170 22-105 (124)
139 2jvr_A Nucleolar protein 3; RN 99.8 1.1E-18 3.9E-23 121.4 8.6 80 88-171 27-107 (111)
140 1x4f_A Matrin 3; structural ge 99.8 1.9E-18 6.7E-23 120.1 9.8 81 85-171 21-104 (112)
141 2hgl_A HNRPF protein, heteroge 99.8 1.2E-18 3.9E-23 125.6 8.7 83 85-169 40-125 (136)
142 3egn_A RNA-binding protein 40; 99.8 3.6E-19 1.2E-23 129.2 5.9 86 86-172 42-133 (143)
143 2e5g_A U6 snRNA-specific termi 99.8 4.7E-18 1.6E-22 114.6 11.0 80 86-171 5-84 (94)
144 2jvo_A Nucleolar protein 3; nu 99.8 3.2E-18 1.1E-22 118.6 10.1 79 85-171 27-105 (108)
145 1wf1_A RNA-binding protein RAL 99.8 8.4E-18 2.9E-22 116.6 12.1 77 87-171 25-102 (110)
146 2la4_A Nuclear and cytoplasmic 99.8 1.6E-18 5.5E-23 118.4 8.3 77 87-169 25-101 (101)
147 2xnq_A Nuclear polyadenylated 99.8 6.1E-18 2.1E-22 114.9 11.1 78 85-170 18-96 (97)
148 1x5p_A Negative elongation fac 99.8 1.6E-17 5.4E-22 112.6 13.1 81 84-172 10-90 (97)
149 2krb_A Eukaryotic translation 99.8 9.8E-19 3.3E-23 114.8 6.7 73 89-163 1-80 (81)
150 4f02_A Polyadenylate-binding p 99.8 6.5E-18 2.2E-22 130.3 11.9 85 86-170 12-96 (213)
151 3lqv_A PRE-mRNA branch site pr 99.8 4.4E-18 1.5E-22 118.8 10.0 81 87-170 6-86 (115)
152 1iqt_A AUF1, heterogeneous nuc 99.8 5.3E-19 1.8E-23 114.2 4.9 75 91-166 1-75 (75)
153 2hgn_A Heterogeneous nuclear r 99.8 3.9E-19 1.3E-23 128.5 4.6 84 86-172 43-126 (139)
154 2lmi_A GRSF-1, G-rich sequence 99.8 1E-18 3.4E-23 120.8 6.4 84 85-170 7-93 (107)
155 2f3j_A RNA and export factor b 99.8 3.8E-18 1.3E-22 128.2 9.8 85 85-170 84-168 (177)
156 2xs2_A Deleted in azoospermia- 99.8 1.5E-18 5.3E-23 118.6 6.8 83 86-171 6-88 (102)
157 1whx_A Hypothetical protein ri 99.7 5.4E-18 1.8E-22 118.0 9.5 78 88-171 9-86 (111)
158 2dnn_A RNA-binding protein 12; 99.7 5.3E-18 1.8E-22 117.7 9.3 79 88-169 15-93 (109)
159 1fxl_A Paraneoplastic encephal 99.7 1.3E-17 4.6E-22 122.6 12.0 83 88-170 1-83 (167)
160 3pgw_A U1-A; protein-RNA compl 99.7 1.1E-17 3.7E-22 133.8 12.3 75 88-167 206-281 (282)
161 2e44_A Insulin-like growth fac 99.7 7.2E-18 2.5E-22 114.0 9.3 81 86-170 12-93 (96)
162 1b7f_A Protein (SXL-lethal pro 99.7 1.1E-17 3.9E-22 123.3 10.8 84 88-171 2-85 (168)
163 3sde_A Paraspeckle component 1 99.7 1.4E-17 4.8E-22 132.2 10.9 121 49-171 56-181 (261)
164 2ghp_A U4/U6 snRNA-associated 99.7 6.9E-18 2.4E-22 135.6 8.8 119 50-171 80-199 (292)
165 1wg1_A KIAA1579 protein, homol 99.7 2E-17 7E-22 110.2 9.2 76 88-170 4-79 (88)
166 2cq2_A Hypothetical protein LO 99.7 1.8E-17 6.3E-22 115.4 9.3 80 86-171 22-108 (114)
167 2j8a_A Histone-lysine N-methyl 99.7 1.1E-17 3.8E-22 117.8 8.1 77 90-166 3-93 (136)
168 2diu_A KIAA0430 protein; struc 99.7 2.4E-17 8.2E-22 110.0 9.0 76 87-172 6-87 (96)
169 1qm9_A Polypyrimidine tract-bi 99.7 1.9E-17 6.6E-22 125.7 9.6 77 88-169 119-197 (198)
170 3zzy_A Polypyrimidine tract-bi 99.7 5.2E-17 1.8E-21 115.6 10.9 80 87-171 26-108 (130)
171 3tyt_A Heterogeneous nuclear r 99.7 1.3E-17 4.5E-22 128.1 8.3 78 88-167 122-205 (205)
172 2adc_A Polypyrimidine tract-bi 99.7 3.6E-17 1.2E-21 127.4 10.9 77 88-169 150-228 (229)
173 2dha_A FLJ20171 protein; RRM d 99.7 1.2E-17 4.2E-22 118.2 7.1 81 87-169 21-105 (123)
174 2hgm_A HNRPF protein, heteroge 99.7 1.2E-17 4.1E-22 118.7 7.0 82 85-169 38-121 (126)
175 1sjr_A Polypyrimidine tract-bi 99.7 7.7E-17 2.6E-21 118.9 11.5 81 86-170 43-125 (164)
176 1l3k_A Heterogeneous nuclear r 99.7 5.6E-17 1.9E-21 122.6 10.8 87 84-171 8-94 (196)
177 2e5i_A Heterogeneous nuclear r 99.7 1.7E-16 6E-21 112.2 11.5 77 89-171 25-104 (124)
178 3d2w_A TAR DNA-binding protein 99.7 9.6E-17 3.3E-21 107.3 9.4 77 86-171 8-86 (89)
179 3md3_A Nuclear and cytoplasmic 99.7 1.4E-16 4.9E-21 117.0 11.0 81 90-171 1-81 (166)
180 3tyt_A Heterogeneous nuclear r 99.7 1E-16 3.5E-21 123.1 10.3 77 88-169 3-80 (205)
181 2dnl_A Cytoplasmic polyadenyla 99.7 5.6E-17 1.9E-21 113.2 8.0 79 86-167 5-86 (114)
182 1wf0_A TDP-43, TAR DNA-binding 99.7 4.6E-17 1.6E-21 108.3 7.0 79 87-172 3-81 (88)
183 2qfj_A FBP-interacting repress 99.7 1.6E-16 5.4E-21 121.9 9.8 83 88-170 27-109 (216)
184 2bz2_A Negative elongation fac 99.7 2E-16 7E-21 111.6 9.3 79 86-172 36-114 (121)
185 2pe8_A Splicing factor 45; RRM 99.7 5.3E-16 1.8E-20 106.8 11.1 83 86-168 5-93 (105)
186 2hzc_A Splicing factor U2AF 65 99.7 1.8E-16 6.1E-21 105.0 7.9 72 87-165 4-86 (87)
187 3nmr_A Cugbp ELAV-like family 99.7 6.5E-16 2.2E-20 114.5 10.5 84 88-171 2-90 (175)
188 3u1l_A PRE-mRNA-splicing facto 99.7 3.9E-16 1.3E-20 122.1 9.3 81 86-172 131-232 (240)
189 2cjk_A Nuclear polyadenylated 99.6 3.2E-16 1.1E-20 115.5 8.2 80 88-169 2-81 (167)
190 3pgw_A U1-A; protein-RNA compl 99.6 1E-15 3.5E-20 122.3 11.5 83 85-170 5-91 (282)
191 2voo_A Lupus LA protein; RNA-b 99.6 1.6E-15 5.3E-20 115.4 10.8 79 89-169 109-187 (193)
192 2dit_A HIV TAT specific factor 99.6 9.7E-15 3.3E-19 101.5 13.0 83 85-171 11-104 (112)
193 2adc_A Polypyrimidine tract-bi 99.6 1.3E-15 4.5E-20 118.5 8.8 81 85-170 30-111 (229)
194 1qm9_A Polypyrimidine tract-bi 99.6 1.5E-15 5.2E-20 115.2 7.5 78 88-170 2-80 (198)
195 3sde_A Paraspeckle component 1 99.6 6.7E-15 2.3E-19 116.7 10.9 80 83-168 16-95 (261)
196 1fje_B Nucleolin RBD12, protei 99.6 8.5E-16 2.9E-20 114.2 3.6 85 85-171 9-93 (175)
197 3v4m_A Splicing factor U2AF 65 99.6 1.2E-14 3.9E-19 100.1 9.0 83 87-169 3-97 (105)
198 2yh0_A Splicing factor U2AF 65 99.5 1E-13 3.5E-18 104.7 12.1 77 88-171 3-90 (198)
199 1jmt_A Splicing factor U2AF 35 99.5 8E-15 2.7E-19 100.7 5.3 72 94-166 20-103 (104)
200 2g4b_A Splicing factor U2AF 65 99.5 3.1E-14 1.1E-18 105.2 9.0 76 88-170 3-89 (172)
201 3ue2_A Poly(U)-binding-splicin 99.5 7E-14 2.4E-18 98.1 9.9 81 88-168 19-108 (118)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 3.4E-13 1.2E-17 91.8 11.8 76 89-171 10-92 (100)
203 3tht_A Alkylated DNA repair pr 99.4 3.3E-13 1.1E-17 110.7 9.1 77 85-167 14-97 (345)
204 3s6e_A RNA-binding protein 39; 99.4 3.4E-12 1.2E-16 88.9 9.7 79 86-168 4-92 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.3 2.5E-11 8.4E-16 80.2 8.4 76 88-172 6-89 (91)
206 1owx_A Lupus LA protein, SS-B, 99.2 7.7E-11 2.6E-15 82.5 9.9 79 82-166 11-93 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.0 7.4E-10 2.5E-14 73.5 5.5 72 88-168 14-94 (95)
208 3dxb_A Thioredoxin N-terminall 99.0 2.6E-09 8.8E-14 82.3 8.9 80 89-168 124-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.7 1.4E-07 4.8E-12 63.9 8.2 71 88-164 20-95 (117)
210 1wey_A Calcipressin 1; structu 98.2 5.2E-06 1.8E-10 55.9 6.9 76 89-170 5-85 (104)
211 2dhx_A Poly (ADP-ribose) polym 97.8 0.00038 1.3E-08 46.6 10.6 76 86-170 5-85 (104)
212 1uw4_A UPF3X; nonsense mediate 97.8 0.00022 7.5E-09 47.0 8.7 77 90-166 2-85 (91)
213 1whv_A Poly(A)-specific ribonu 97.4 0.00065 2.2E-08 45.0 7.2 56 88-152 15-70 (100)
214 1wwh_A Nucleoporin 35, nucleop 97.3 0.0016 5.4E-08 44.9 8.5 72 87-166 22-94 (119)
215 3ctr_A Poly(A)-specific ribonu 97.3 0.00058 2E-08 45.4 5.5 54 90-152 7-60 (101)
216 4f25_A Polyadenylate-binding p 97.0 8.4E-05 2.9E-09 51.0 -0.3 56 49-105 43-113 (115)
217 2l08_A Regulator of nonsense t 97.0 0.0023 7.9E-08 42.4 6.3 78 89-166 9-93 (97)
218 3p3d_A Nucleoporin 53; structu 96.2 0.013 4.5E-07 40.9 6.2 75 90-166 8-96 (132)
219 3pq1_A Poly(A) RNA polymerase; 96.0 0.0035 1.2E-07 53.1 3.1 55 89-149 53-107 (464)
220 2i2y_A Fusion protein consists 95.3 0.007 2.4E-07 43.0 2.0 42 127-169 9-51 (150)
221 2kn4_A Immunoglobulin G-bindin 95.2 0.025 8.6E-07 40.3 4.8 34 119-154 3-36 (158)
222 3lqv_A PRE-mRNA branch site pr 94.0 0.0048 1.6E-07 41.7 -1.5 65 49-115 45-109 (115)
223 2hvz_A Splicing factor, argini 93.4 0.053 1.8E-06 35.5 2.9 48 50-98 36-100 (101)
224 2wbr_A GW182, gawky, LD47780P; 91.7 0.16 5.5E-06 33.0 3.4 47 50-111 42-88 (89)
225 3d45_A Poly(A)-specific ribonu 90.2 0.93 3.2E-05 38.8 7.7 56 89-153 440-495 (507)
226 3p5t_L Cleavage and polyadenyl 90.0 0.27 9.4E-06 31.2 3.3 44 31-79 29-72 (90)
227 2lkz_A RNA-binding protein 5; 87.9 0.22 7.4E-06 32.5 1.7 37 33-74 39-75 (95)
228 2lxi_A RNA-binding protein 10; 87.8 0.29 9.8E-06 31.4 2.2 31 32-66 29-59 (91)
229 3ns6_A Eukaryotic translation 86.2 0.24 8.1E-06 32.4 1.1 40 32-76 39-78 (100)
230 2krb_A Eukaryotic translation 85.3 0.63 2.2E-05 28.8 2.8 32 47-79 43-74 (81)
231 3s8s_A Histone-lysine N-methyl 83.9 0.26 9.1E-06 32.9 0.5 41 30-75 31-71 (110)
232 2m2b_A RNA-binding protein 10; 83.5 0.88 3E-05 31.1 3.1 35 35-75 55-89 (131)
233 1uaw_A Mouse-musashi-1; RNP-ty 83.0 1.4 4.7E-05 26.6 3.7 33 30-66 25-57 (77)
234 2mss_A Protein (musashi1); RNA 82.4 1.5 5.3E-05 26.3 3.7 30 32-65 26-55 (75)
235 1x5s_A Cold-inducible RNA-bind 82.3 1.5 5.1E-05 28.2 3.8 31 46-77 49-79 (102)
236 2a3j_A U1 small nuclear ribonu 81.6 1.1 3.9E-05 30.7 3.1 31 47-78 68-98 (127)
237 4fxv_A ELAV-like protein 1; RN 81.5 0.31 1.1E-05 31.8 0.1 41 30-75 44-84 (99)
238 2ki2_A SS-DNA binding protein 80.8 1.2 4E-05 28.0 2.8 41 33-79 29-69 (90)
239 1s79_A Lupus LA protein; RRM, 80.7 0.92 3.2E-05 29.8 2.3 31 31-66 37-67 (103)
240 2dgp_A Bruno-like 4, RNA bindi 78.6 2 6.7E-05 27.8 3.4 38 33-75 41-78 (106)
241 1x5u_A Splicing factor 3B subu 78.3 1.1 3.9E-05 29.0 2.2 30 47-77 53-82 (105)
242 2lmi_A GRSF-1, G-rich sequence 78.2 2.6 8.8E-05 27.5 3.9 30 32-66 41-70 (107)
243 2hgl_A HNRPF protein, heteroge 78.1 4.2 0.00015 28.1 5.2 62 32-114 74-135 (136)
244 2div_A TRNA selenocysteine ass 77.3 1.1 3.9E-05 28.6 1.9 39 34-77 39-77 (99)
245 2lea_A Serine/arginine-rich sp 77.1 2.8 9.4E-05 28.8 4.0 30 47-77 85-114 (135)
246 1p1t_A Cleavage stimulation fa 77.0 1.4 4.9E-05 28.4 2.3 41 31-76 34-74 (104)
247 2dnz_A Probable RNA-binding pr 77.0 1.4 4.8E-05 27.9 2.2 31 46-77 42-72 (95)
248 2cqb_A Peptidyl-prolyl CIS-tra 76.6 1.6 5.6E-05 28.0 2.6 40 30-74 37-76 (102)
249 1x5t_A Splicing factor 3B subu 76.6 1.8 6.1E-05 27.4 2.7 28 46-74 43-70 (96)
250 2la6_A RNA-binding protein FUS 76.6 1.5 5E-05 28.2 2.3 30 46-76 58-87 (99)
251 2kxn_B Transformer-2 protein h 76.1 1.7 5.8E-05 29.7 2.6 32 46-78 83-114 (129)
252 1x4e_A RNA binding motif, sing 76.1 1 3.5E-05 27.9 1.4 33 46-79 42-74 (85)
253 1iqt_A AUF1, heterogeneous nuc 76.0 2.1 7.3E-05 25.6 2.8 21 46-66 36-56 (75)
254 2cpx_A Hypothetical protein FL 75.3 2.1 7.2E-05 28.1 2.9 30 47-77 63-92 (115)
255 1wel_A RNA-binding protein 12; 74.2 2.2 7.5E-05 28.7 2.8 21 46-66 62-82 (124)
256 1jmt_A Splicing factor U2AF 35 74.2 0.57 2E-05 30.9 -0.3 42 30-77 52-93 (104)
257 3n9u_C Cleavage and polyadenyl 73.9 0.78 2.7E-05 32.6 0.4 37 33-74 85-121 (156)
258 1x5o_A RNA binding motif, sing 73.9 5.3 0.00018 26.1 4.6 33 47-80 62-94 (114)
259 2j76_E EIF-4B, EIF4B, eukaryot 73.9 2.2 7.4E-05 27.5 2.6 30 47-78 57-86 (100)
260 2fy1_A RNA-binding motif prote 72.9 2.5 8.5E-05 28.1 2.8 39 31-75 33-71 (116)
261 2jrs_A RNA-binding protein 39; 72.5 1.2 3.9E-05 29.4 0.9 30 47-77 64-93 (108)
262 2nlw_A Eukaryotic translation 72.4 1.1 3.9E-05 29.2 0.9 28 47-75 57-84 (105)
263 2x1f_A MRNA 3'-END-processing 72.3 1.3 4.5E-05 28.2 1.2 28 47-75 40-67 (96)
264 2dgs_A DAZ-associated protein 72.0 1.8 6.1E-05 27.7 1.8 21 46-66 47-67 (99)
265 2cqp_A RNA-binding protein 12; 72.0 1.8 6E-05 27.6 1.8 38 32-74 42-79 (98)
266 1p27_B RNA-binding protein 8A; 72.0 1.2 4E-05 29.0 0.9 30 46-76 60-89 (106)
267 2dnm_A SRP46 splicing factor; 71.8 1.4 4.7E-05 28.5 1.2 30 47-77 51-80 (103)
268 1wg5_A Heterogeneous nuclear r 71.5 3 0.0001 27.0 2.8 21 46-66 52-72 (104)
269 2cpi_A CCR4-NOT transcription 71.3 1.4 4.7E-05 29.1 1.1 44 30-75 43-86 (111)
270 3ex7_B RNA-binding protein 8A; 71.2 2 6.9E-05 28.8 2.0 27 47-74 60-86 (126)
271 1whw_A Hypothetical protein ri 70.8 1.7 5.7E-05 27.8 1.4 27 47-74 46-72 (99)
272 3q2s_C Cleavage and polyadenyl 70.1 1.1 3.8E-05 34.0 0.5 28 46-74 107-134 (229)
273 2jvr_A Nucleolar protein 3; RN 70.0 1.7 5.8E-05 29.0 1.4 26 49-75 65-90 (111)
274 2e5j_A Methenyltetrahydrofolat 69.7 3.5 0.00012 26.2 2.9 28 49-77 54-81 (97)
275 1fj7_A Nucleolin RBD1, protein 69.7 2.4 8.2E-05 27.1 2.0 30 47-78 54-83 (101)
276 2cpz_A CUG triplet repeat RNA- 69.3 1.9 6.5E-05 28.4 1.5 27 47-74 63-89 (115)
277 2dis_A Unnamed protein product 68.2 3.3 0.00011 26.8 2.5 26 46-72 47-72 (109)
278 2g0c_A ATP-dependent RNA helic 68.2 13 0.00044 22.5 5.2 68 91-167 2-75 (76)
279 1x4h_A RNA-binding protein 28; 67.9 2 6.8E-05 28.0 1.3 26 47-73 53-78 (111)
280 2cpe_A RNA-binding protein EWS 67.9 4.2 0.00014 26.5 3.0 29 46-75 60-88 (113)
281 2cph_A RNA binding motif prote 67.8 3.2 0.00011 26.8 2.4 29 47-76 54-83 (107)
282 2dhg_A TRNA selenocysteine ass 67.8 4.5 0.00016 25.9 3.1 29 47-76 47-75 (104)
283 1oo0_B CG8781-PA, drosophila Y 67.7 1.9 6.5E-05 28.1 1.2 29 46-75 63-91 (110)
284 3ue2_A Poly(U)-binding-splicin 66.9 0.34 1.2E-05 33.0 -2.7 48 28-76 48-95 (118)
285 3dxb_A Thioredoxin N-terminall 66.8 0.7 2.4E-05 34.6 -1.3 50 29-79 153-202 (222)
286 2pe8_A Splicing factor 45; RRM 66.3 2.1 7.2E-05 28.2 1.2 43 30-76 38-80 (105)
287 2hgn_A Heterogeneous nuclear r 65.2 5.3 0.00018 27.7 3.2 22 47-69 82-103 (139)
288 4eyt_A Telomerase associated p 65.1 25 0.00084 22.6 7.4 69 88-164 11-86 (129)
289 2ku7_A MLL1 PHD3-CYP33 RRM chi 63.3 2 6.9E-05 29.2 0.7 27 47-74 101-127 (140)
290 1x4b_A Heterogeneous nuclear r 63.3 4.6 0.00016 26.5 2.5 32 31-66 53-84 (116)
291 2bz2_A Negative elongation fac 61.8 4.9 0.00017 27.0 2.4 27 49-76 71-97 (121)
292 1u6f_A Tcubp1, RNA-binding pro 61.5 1.8 6.1E-05 29.6 0.1 27 47-74 80-106 (139)
293 3v4m_A Splicing factor U2AF 65 61.1 2.5 8.6E-05 27.8 0.8 44 30-76 40-83 (105)
294 3pgw_S U1-70K; protein-RNA com 60.8 3.9 0.00013 34.1 2.1 29 47-76 140-168 (437)
295 2kt5_A RNA and export factor-b 59.3 4.4 0.00015 27.0 1.8 28 47-75 72-99 (124)
296 3egn_A RNA-binding protein 40; 55.2 3.7 0.00013 28.2 0.9 28 47-75 88-115 (143)
297 1rk8_A CG8781-PA, CG8781-PA pr 55.1 2.8 9.5E-05 29.7 0.2 27 47-74 110-136 (165)
298 4e8u_A Putative uncharacterize 54.7 34 0.0012 24.7 5.9 57 90-149 13-81 (172)
299 1h2v_Z 20 kDa nuclear CAP bind 54.3 3 0.0001 29.1 0.3 20 47-66 77-96 (156)
300 2f3j_A RNA and export factor b 53.8 7.9 0.00027 27.8 2.5 30 47-77 125-154 (177)
301 3tht_A Alkylated DNA repair pr 35.3 15 0.00052 29.6 1.7 25 50-75 55-79 (345)
302 3h7h_B Transcription elongatio 28.7 1E+02 0.0034 20.2 4.6 36 115-155 40-75 (106)
303 3uzu_A Ribosomal RNA small sub 24.4 53 0.0018 25.4 3.0 33 90-122 115-147 (279)
304 3ts2_A Protein LIN-28 homolog 21.9 17 0.0006 25.4 -0.2 27 105-139 3-29 (148)
305 2exu_A Transcription initiatio 20.1 1.6E+02 0.0055 21.6 4.7 26 130-155 148-173 (200)
No 1
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.94 E-value=3e-26 Score=170.76 Aligned_cols=93 Identities=62% Similarity=1.140 Sum_probs=83.3
Q ss_pred CCCCCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCc
Q 043064 80 GPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQ 159 (196)
Q Consensus 80 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~ 159 (196)
.+.+....+.++|||+|||+.+++++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.++|+.||..||+..|.|+
T Consensus 63 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 142 (165)
T 1rk8_A 63 EPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 142 (165)
T ss_dssp ---CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 44566677789999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred EeEEEEcccCCCC
Q 043064 160 TLTVDWAFSNGPS 172 (196)
Q Consensus 160 ~l~v~~a~~~~~~ 172 (196)
.|.|.|+.++.+.
T Consensus 143 ~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 143 TIQVDWCFVKGPK 155 (165)
T ss_dssp ECEEEESEECC--
T ss_pred EEEEEEecCCCCC
Confidence 9999999887754
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.90 E-value=3.9e-23 Score=141.35 Aligned_cols=82 Identities=27% Similarity=0.513 Sum_probs=78.7
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEc
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a 166 (196)
..+++|||+|||+++|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|++.|||..|.|++|+|.||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 043064 167 FS 168 (196)
Q Consensus 167 ~~ 168 (196)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 76
No 3
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.89 E-value=4e-23 Score=146.92 Aligned_cols=93 Identities=61% Similarity=1.204 Sum_probs=86.0
Q ss_pred CCCCCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCc
Q 043064 80 GPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQ 159 (196)
Q Consensus 80 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~ 159 (196)
.+.+....+.++|||+|||+.+|+++|+.+|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|.|+
T Consensus 13 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 13 EPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp -CCBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 34455667789999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred EeEEEEcccCCCC
Q 043064 160 TLTVDWAFSNGPS 172 (196)
Q Consensus 160 ~l~v~~a~~~~~~ 172 (196)
.|.|.|+.++...
T Consensus 93 ~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 93 PISVDWCFVRGPP 105 (126)
T ss_dssp BCEEEESEESSSC
T ss_pred EEEEEEecCCCCC
Confidence 9999999988765
No 4
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=3.3e-22 Score=147.47 Aligned_cols=123 Identities=22% Similarity=0.341 Sum_probs=98.8
Q ss_pred CCcCcccccCCCcHHHHHHhhhhccc-C-------------------CCCCCCCCCCCCCCCEEEEcCCCccCcHHHHHH
Q 043064 49 KTKGRGFREEADSERHSRLADRNFES-L-------------------GTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQN 108 (196)
Q Consensus 49 ~~kG~gf~~~~~~~~~~~~~~~~~~~-~-------------------~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~ 108 (196)
+++|||||.|.+...+.+.. ..++. . ..............++|||+|||+.+++++|+.
T Consensus 11 ~~~G~~fV~f~~~~~A~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~ 89 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVF-KQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRR 89 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHH-HHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHH-HhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 68999999999655554432 11110 0 000011122334578999999999999999999
Q ss_pred hhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccCCCC
Q 043064 109 VFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPS 172 (196)
Q Consensus 109 ~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~~~~ 172 (196)
+|++||.|..|.|+.++.+|.++|||||+|.+.++|+.||..|||..|.|+.|.|.|+.+..+.
T Consensus 90 ~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 90 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp HHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred HHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 9999999999999999889999999999999999999999999999999999999999876544
No 5
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.87 E-value=5.1e-21 Score=133.89 Aligned_cols=90 Identities=26% Similarity=0.459 Sum_probs=83.9
Q ss_pred CCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeE
Q 043064 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLT 162 (196)
Q Consensus 83 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~ 162 (196)
.....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..||+..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 33456789999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEEcccCCCC
Q 043064 163 VDWAFSNGPS 172 (196)
Q Consensus 163 v~~a~~~~~~ 172 (196)
|.|+.++...
T Consensus 89 V~~a~~~~~~ 98 (115)
T 2dgo_A 89 TNWATRKPPA 98 (115)
T ss_dssp EEESSCCCCC
T ss_pred EEEccCCCCC
Confidence 9999887765
No 6
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=137.34 Aligned_cols=86 Identities=31% Similarity=0.440 Sum_probs=80.3
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
..+.++|||+|||.++++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456889999999999999999999999999999999987 999999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 043064 166 AFSNGPS 172 (196)
Q Consensus 166 a~~~~~~ 172 (196)
+.+....
T Consensus 83 a~~~~~~ 89 (116)
T 2fy1_A 83 AKKPSFQ 89 (116)
T ss_dssp CCCSSCS
T ss_pred CCCCCCC
Confidence 9876654
No 7
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=5.1e-21 Score=130.43 Aligned_cols=87 Identities=17% Similarity=0.352 Sum_probs=81.2
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||. |++..|.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999998 99999999999999
Q ss_pred EcccCCCC
Q 043064 165 WAFSNGPS 172 (196)
Q Consensus 165 ~a~~~~~~ 172 (196)
|+.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99877654
No 8
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.2e-21 Score=131.32 Aligned_cols=88 Identities=34% Similarity=0.522 Sum_probs=82.8
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45567999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCCCC
Q 043064 165 WAFSNGPS 172 (196)
Q Consensus 165 ~a~~~~~~ 172 (196)
|+.++...
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99887654
No 9
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=4.1e-21 Score=130.86 Aligned_cols=88 Identities=24% Similarity=0.325 Sum_probs=82.4
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|+..||+..|.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCCCC
Q 043064 165 WAFSNGPS 172 (196)
Q Consensus 165 ~a~~~~~~ 172 (196)
|+.++...
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99887654
No 10
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=2.8e-21 Score=134.56 Aligned_cols=83 Identities=14% Similarity=0.251 Sum_probs=78.9
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEc
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a 166 (196)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++.|||..|.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 043064 167 FSN 169 (196)
Q Consensus 167 ~~~ 169 (196)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 11
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=4.4e-21 Score=129.65 Aligned_cols=86 Identities=29% Similarity=0.396 Sum_probs=81.2
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEc
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a 166 (196)
.+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|+..||+..|.|+.|+|.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35689999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 043064 167 FSNGPS 172 (196)
Q Consensus 167 ~~~~~~ 172 (196)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 877654
No 12
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=7.7e-21 Score=129.74 Aligned_cols=89 Identities=26% Similarity=0.419 Sum_probs=82.4
Q ss_pred CCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeE
Q 043064 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLT 162 (196)
Q Consensus 83 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~ 162 (196)
.....+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|+..||+..|.|+.|+
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445667899999999999999999999999999999999997 899999999999999999999999999999999999
Q ss_pred EEEcccCCCC
Q 043064 163 VDWAFSNGPS 172 (196)
Q Consensus 163 v~~a~~~~~~ 172 (196)
|.|+.++..+
T Consensus 90 v~~a~~~~~~ 99 (100)
T 2do4_A 90 VAISNSGPSS 99 (100)
T ss_dssp EEECCCCSCC
T ss_pred EEECCCCCCC
Confidence 9999887653
No 13
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.8e-21 Score=133.30 Aligned_cols=92 Identities=62% Similarity=1.216 Sum_probs=85.0
Q ss_pred CCCCCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCc
Q 043064 80 GPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQ 159 (196)
Q Consensus 80 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~ 159 (196)
.+.+....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|+..||+..|.|+
T Consensus 14 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 93 (106)
T 1p27_B 14 EPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 93 (106)
T ss_dssp -CCBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence 34455667789999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred EeEEEEcccCCC
Q 043064 160 TLTVDWAFSNGP 171 (196)
Q Consensus 160 ~l~v~~a~~~~~ 171 (196)
.|.|.|+.++++
T Consensus 94 ~l~V~~a~~~~~ 105 (106)
T 1p27_B 94 PISVDWCFVRGP 105 (106)
T ss_dssp BCEEEESEESSC
T ss_pred EEEEEeecCCCC
Confidence 999999988764
No 14
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=3.8e-22 Score=134.34 Aligned_cols=84 Identities=19% Similarity=0.392 Sum_probs=77.4
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC-CceeCCcEeEEEEc
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYG-EIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMN-GGELLTQTLTVDWA 166 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~-~~~l~g~~l~v~~a 166 (196)
+++|||+|||+.+|+++|+++|++|| .|.+|.|+.++.++.++|||||+|.+.++|++||+.++ +..|+|++|+|.||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999998875 56799999999999
Q ss_pred ccCCCC
Q 043064 167 FSNGPS 172 (196)
Q Consensus 167 ~~~~~~ 172 (196)
.|++..
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 887654
No 15
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2.8e-21 Score=132.66 Aligned_cols=90 Identities=23% Similarity=0.333 Sum_probs=83.2
Q ss_pred CCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeE
Q 043064 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLT 162 (196)
Q Consensus 83 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~ 162 (196)
++...+.++|||+|||+.+++++|+.+|++||.|..|.|+.++.++.++|||||+|.+.++|++|+..||+..|.|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34456689999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEEcccCCCC
Q 043064 163 VDWAFSNGPS 172 (196)
Q Consensus 163 v~~a~~~~~~ 172 (196)
|.|+.+....
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dnm_A 87 VQVARYGRRD 96 (103)
T ss_dssp EEECSSCCSC
T ss_pred EEECCcCCCC
Confidence 9999876544
No 16
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.3e-20 Score=132.15 Aligned_cols=90 Identities=22% Similarity=0.343 Sum_probs=82.6
Q ss_pred CCCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEe
Q 043064 82 GPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTL 161 (196)
Q Consensus 82 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l 161 (196)
.+....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..|++ .|.|+.|
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 345566789999999999999999999999999999999999988999999999999999999999999998 8999999
Q ss_pred EEEEcccCCCC
Q 043064 162 TVDWAFSNGPS 172 (196)
Q Consensus 162 ~v~~a~~~~~~ 172 (196)
+|.|+.+....
T Consensus 89 ~V~~a~~~~~~ 99 (116)
T 2cqd_A 89 NVNLAYLGAKP 99 (116)
T ss_dssp EEEESTTTCCC
T ss_pred EEEEcccCCCc
Confidence 99999876543
No 17
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.86 E-value=3.8e-21 Score=127.86 Aligned_cols=84 Identities=25% Similarity=0.397 Sum_probs=77.0
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEc
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a 166 (196)
.+.++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|+..||+..|.|+.|+|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35688999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCC
Q 043064 167 FSNG 170 (196)
Q Consensus 167 ~~~~ 170 (196)
.+++
T Consensus 84 ~~kp 87 (87)
T 3bs9_A 84 TRKP 87 (87)
T ss_dssp C---
T ss_pred CCCC
Confidence 8764
No 18
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.7e-21 Score=131.23 Aligned_cols=88 Identities=30% Similarity=0.463 Sum_probs=82.2
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|+..||+..|.|+.|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567889999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCCCC
Q 043064 165 WAFSNGPS 172 (196)
Q Consensus 165 ~a~~~~~~ 172 (196)
|+.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99877654
No 19
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.86 E-value=6.6e-21 Score=125.55 Aligned_cols=82 Identities=24% Similarity=0.514 Sum_probs=78.3
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEccc
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~ 168 (196)
+++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|+..|||..|.|+.|+|.|+.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred CC
Q 043064 169 NG 170 (196)
Q Consensus 169 ~~ 170 (196)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 20
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=9.9e-21 Score=131.48 Aligned_cols=92 Identities=24% Similarity=0.399 Sum_probs=84.5
Q ss_pred CCCCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC------Cc
Q 043064 81 PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMN------GG 154 (196)
Q Consensus 81 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~------~~ 154 (196)
+.+....+.++|||+|||+.+++++|+.+|++||.|..|.|+.++.++.++|||||+|.+.++|++||..|| +.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~ 86 (111)
T 1x4h_A 7 GLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGL 86 (111)
T ss_dssp CCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCE
T ss_pred CCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCc
Confidence 334455678899999999999999999999999999999999998899999999999999999999999999 99
Q ss_pred eeCCcEeEEEEcccCCCC
Q 043064 155 ELLTQTLTVDWAFSNGPS 172 (196)
Q Consensus 155 ~l~g~~l~v~~a~~~~~~ 172 (196)
.|.|+.|+|.|+.++...
T Consensus 87 ~~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 87 KLDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp ESSSCEEEEECCCCCCCC
T ss_pred EEcCEEEEEEECCCCccC
Confidence 999999999999877654
No 21
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=8.2e-21 Score=130.69 Aligned_cols=90 Identities=27% Similarity=0.350 Sum_probs=83.4
Q ss_pred CCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeE
Q 043064 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLT 162 (196)
Q Consensus 83 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~ 162 (196)
+....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|+..||+..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34456688999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEEcccCCCC
Q 043064 163 VDWAFSNGPS 172 (196)
Q Consensus 163 v~~a~~~~~~ 172 (196)
|.|+.++...
T Consensus 89 v~~a~~~~~~ 98 (105)
T 1x5u_A 89 VNKASAHNKN 98 (105)
T ss_dssp EEETTTTSCC
T ss_pred EEECCCCCcC
Confidence 9999877653
No 22
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.6e-21 Score=130.35 Aligned_cols=86 Identities=31% Similarity=0.494 Sum_probs=81.1
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCCeeEE-EEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNL-HLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v-~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
.+.++|||+|||+.+++++|+.+|++||.|..| .|+.++.++.++|||||+|.+.++|++|+..||+..|.|+.|+|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 043064 166 AFSNGPS 172 (196)
Q Consensus 166 a~~~~~~ 172 (196)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9877654
No 23
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.85 E-value=4.8e-21 Score=132.99 Aligned_cols=93 Identities=62% Similarity=1.140 Sum_probs=85.7
Q ss_pred CCCCCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCc
Q 043064 80 GPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQ 159 (196)
Q Consensus 80 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~ 159 (196)
.+.+....+.++|||+|||+.+++++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|.|+
T Consensus 17 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 96 (110)
T 1oo0_B 17 EPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 96 (110)
T ss_dssp -CCBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 34556677789999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred EeEEEEcccCCCC
Q 043064 160 TLTVDWAFSNGPS 172 (196)
Q Consensus 160 ~l~v~~a~~~~~~ 172 (196)
.|+|.|+.++.++
T Consensus 97 ~l~V~~a~~~~~~ 109 (110)
T 1oo0_B 97 TIQVDWCFVKGPK 109 (110)
T ss_dssp ECEEEESEESSCC
T ss_pred EEEEEEcccCCCC
Confidence 9999999887653
No 24
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.85 E-value=7.8e-21 Score=146.07 Aligned_cols=125 Identities=31% Similarity=0.378 Sum_probs=101.8
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcccCCCCCCCCC-----C-------------CCCCCCEEEEcCCCccCcHHHHHH
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFESLGTDGGPGP-----Q-------------RSIEGWIILVTGVHEEAQEDDLQN 108 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-------------~~~~~~~l~V~nLp~~~te~~L~~ 108 (196)
+++++||+||.|.+. ..+..+...++.....+.... . .....++|||+|||..+++++|++
T Consensus 66 ~g~~~g~afV~f~~~-~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~ 144 (216)
T 2qfj_A 66 TMKHKGFAFVEYEVP-EAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKS 144 (216)
T ss_dssp C-CCCSEEEEEESSH-HHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHH
T ss_pred CCccCceEEEEeCCH-HHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHH
Confidence 457899999999954 444444445555544443211 0 123458999999999999999999
Q ss_pred hhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccCCCC
Q 043064 109 VFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPS 172 (196)
Q Consensus 109 ~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~~~~ 172 (196)
+|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+..||+..|+|+.|.|.|+.+.+..
T Consensus 145 ~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 145 VFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred HHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 9999999999999999889999999999999999999999999999999999999999877543
No 25
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.2e-20 Score=138.92 Aligned_cols=120 Identities=22% Similarity=0.413 Sum_probs=98.5
Q ss_pred CCCcCcccccCCCcHHHHHHhhhhcccCCCCCC---------CCCCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeE
Q 043064 48 KKTKGRGFREEADSERHSRLADRNFESLGTDGG---------PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRN 118 (196)
Q Consensus 48 ~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~ 118 (196)
.+++|+|||.|.+.+. +..+...+++....+. .......+.++|||+|||..+++++|+++|++||.|..
T Consensus 38 ~~~~g~afV~f~~~~~-a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~ 116 (166)
T 3md3_A 38 NKNVNYAFVEYHQSHD-ANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLS 116 (166)
T ss_dssp -CCEEEEEEEESSHHH-HHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEE
T ss_pred CCCCCEEEEEeCCHHH-HHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeE
Confidence 4688999999995444 4434344444333221 12234456789999999999999999999999999999
Q ss_pred EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEccc
Q 043064 119 LHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168 (196)
Q Consensus 119 v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~ 168 (196)
+.++.++.++.++|||||+|.+.++|.+|+..|||..|+|+.|+|.||.+
T Consensus 117 ~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 117 GHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 99999988999999999999999999999999999999999999999863
No 26
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.85 E-value=1.1e-20 Score=139.10 Aligned_cols=88 Identities=20% Similarity=0.394 Sum_probs=82.3
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..||+..|.|+.|+|.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCCCCC
Q 043064 166 AFSNGPST 173 (196)
Q Consensus 166 a~~~~~~~ 173 (196)
+.+.....
T Consensus 116 a~~~~~~~ 123 (156)
T 1h2v_Z 116 DAGFKEGR 123 (156)
T ss_dssp ESCCCTTC
T ss_pred CCCCCCcC
Confidence 98766543
No 27
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=1.6e-20 Score=131.47 Aligned_cols=87 Identities=26% Similarity=0.406 Sum_probs=81.5
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
..+.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..||+..|.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 043064 166 AFSNGPS 172 (196)
Q Consensus 166 a~~~~~~ 172 (196)
+.++...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpz_A 102 KRSKNDS 108 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCcC
Confidence 9877653
No 28
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.3e-21 Score=129.75 Aligned_cols=88 Identities=27% Similarity=0.485 Sum_probs=82.2
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCCCC
Q 043064 165 WAFSNGPS 172 (196)
Q Consensus 165 ~a~~~~~~ 172 (196)
|+.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99877653
No 29
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=2.6e-21 Score=131.24 Aligned_cols=84 Identities=18% Similarity=0.300 Sum_probs=77.0
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCC--eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCc----eeCC
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGE--IRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGG----ELLT 158 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~--i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~----~l~g 158 (196)
....-.+|||+|||+.+|+++|+++|++||. +..|.+++++.+|+++|||||+|.+.++|++|++.||+. .|+|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3445678999999999999999999999995 678999999999999999999999999999999999986 5999
Q ss_pred cEeEEEEccc
Q 043064 159 QTLTVDWAFS 168 (196)
Q Consensus 159 ~~l~v~~a~~ 168 (196)
++|.|.||++
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999964
No 30
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.7e-20 Score=129.49 Aligned_cols=90 Identities=21% Similarity=0.442 Sum_probs=83.1
Q ss_pred CCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeec-CCCCCcceEEEEEecCHHHHHHHHHHh-CCceeCCcE
Q 043064 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLD-RRTGFVKGYALIEYENFEEAQNAITAM-NGGELLTQT 160 (196)
Q Consensus 83 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~~~g~~~g~afv~f~~~~~a~~al~~l-~~~~l~g~~ 160 (196)
+....+.++|||+|||+.+++++|+.+|++||.|..|.|+.+ +.++.++|||||+|.+.++|++||..| |+..|.|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 345567889999999999999999999999999999999988 779999999999999999999999999 999999999
Q ss_pred eEEEEcccCCCC
Q 043064 161 LTVDWAFSNGPS 172 (196)
Q Consensus 161 l~v~~a~~~~~~ 172 (196)
|+|.|+.++...
T Consensus 89 l~v~~a~~~~~~ 100 (107)
T 2cph_A 89 LVLEWADSEVTV 100 (107)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999999887654
No 31
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=6.3e-20 Score=128.03 Aligned_cols=87 Identities=22% Similarity=0.290 Sum_probs=80.2
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|+..||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34557889999999999999999999999999999999986 69999999999999999999999999999999999999
Q ss_pred EcccCCCC
Q 043064 165 WAFSNGPS 172 (196)
Q Consensus 165 ~a~~~~~~ 172 (196)
|+.+..+.
T Consensus 90 ~a~~~~~~ 97 (114)
T 2do0_A 90 MDERALPK 97 (114)
T ss_dssp ECSCCCCC
T ss_pred EcccCCCC
Confidence 99765544
No 32
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.85 E-value=4.3e-21 Score=145.41 Aligned_cols=133 Identities=21% Similarity=0.364 Sum_probs=97.3
Q ss_pred CCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCCCCC-------------CCCCCCCCCCEEEEcCCCc
Q 043064 33 APQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDGG-------------PGPQRSIEGWIILVTGVHE 99 (196)
Q Consensus 33 ~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~V~nLp~ 99 (196)
..+..+++. .+++++|||||.|.+.+.+.. +... +.....+. ..+......++|||+|||+
T Consensus 41 ~~v~i~~~~----~~g~~~g~afV~f~~~~~A~~-A~~~-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~ 114 (196)
T 1l3k_A 41 TDCVVMRDP----NTKRSRGFGFVTYATVEEVDA-AMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKE 114 (196)
T ss_dssp EEEEEEECT----TTCCEEEEEEEEESSHHHHHH-HHHT-CSCEETTEECEEEECCC-----------CCSEEEEECCTT
T ss_pred EEEEEEEcC----CCCCccceEEEEeCCHHHHHH-HHhc-CCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCC
Confidence 344444444 345789999999995554444 3222 22111111 1112233468999999999
Q ss_pred cCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccCCCC
Q 043064 100 EAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPS 172 (196)
Q Consensus 100 ~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~~~~ 172 (196)
.+++++|+++|+.||.|..|.++.+..++.++|||||+|.+.++|.+|+.. ++..|+|+.|.|.|+.++...
T Consensus 115 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 115 DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred CCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 999999999999999999999999988999999999999999999999976 899999999999999887754
No 33
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.85 E-value=1.6e-20 Score=135.56 Aligned_cols=88 Identities=26% Similarity=0.396 Sum_probs=82.5
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
.....++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCCCC
Q 043064 165 WAFSNGPS 172 (196)
Q Consensus 165 ~a~~~~~~ 172 (196)
|+.++..+
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99887654
No 34
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.8e-20 Score=128.87 Aligned_cols=82 Identities=17% Similarity=0.287 Sum_probs=74.7
Q ss_pred CCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC----
Q 043064 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLT---- 158 (196)
Q Consensus 83 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g---- 158 (196)
++.....++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.||+..|.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~ 81 (108)
T 1x4c_A 9 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 81 (108)
T ss_dssp CCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCc
Confidence 334456889999999999999999999999999999999864 799999999999999999999999999
Q ss_pred -cEeEEEEcccCCC
Q 043064 159 -QTLTVDWAFSNGP 171 (196)
Q Consensus 159 -~~l~v~~a~~~~~ 171 (196)
+.|+|.++.++..
T Consensus 82 ~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 82 TAYIRVKVDGPRSP 95 (108)
T ss_dssp EEEEEEEESSCCSC
T ss_pred ceEEEEEeCCCCCC
Confidence 9999999988654
No 35
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2.8e-20 Score=127.61 Aligned_cols=86 Identities=23% Similarity=0.392 Sum_probs=80.1
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3456789999999999999999999999999999999987 88999999999999999999999999999999999999
Q ss_pred EcccCCCC
Q 043064 165 WAFSNGPS 172 (196)
Q Consensus 165 ~a~~~~~~ 172 (196)
|+.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2d9p_A 89 LAQRKEER 96 (103)
T ss_dssp ECSSCCCC
T ss_pred EecccccC
Confidence 99887654
No 36
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=3.9e-20 Score=127.26 Aligned_cols=87 Identities=25% Similarity=0.413 Sum_probs=80.6
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC---cEe
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLT---QTL 161 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g---~~l 161 (196)
...+.++|||+|||+.+++++|+.+|++||.|..|.|+.++ ++.++|||||+|.+.++|++||..||+..|.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34457899999999999999999999999999999999987 89999999999999999999999999999988 999
Q ss_pred EEEEcccCCCC
Q 043064 162 TVDWAFSNGPS 172 (196)
Q Consensus 162 ~v~~a~~~~~~ 172 (196)
+|.|+.++..+
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999887654
No 37
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.4e-20 Score=128.20 Aligned_cols=88 Identities=16% Similarity=0.279 Sum_probs=80.7
Q ss_pred CCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCcEe
Q 043064 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRT-GFVKGYALIEYENFEEAQNAITAMNGGELLTQTL 161 (196)
Q Consensus 83 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l 161 (196)
+....+.++|||+|||+.+++++|+.+|++|| |..|.|+.++.+ +.++|||||+|.+.++|++|| .||+..|.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 33445678999999999999999999999999 999999999877 999999999999999999999 999999999999
Q ss_pred EEEEcccCCCC
Q 043064 162 TVDWAFSNGPS 172 (196)
Q Consensus 162 ~v~~a~~~~~~ 172 (196)
.|.|+.++...
T Consensus 87 ~V~~a~~~~~~ 97 (104)
T 1wi8_A 87 RVDVADQAQDK 97 (104)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999877654
No 38
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.84 E-value=1.2e-20 Score=124.80 Aligned_cols=82 Identities=32% Similarity=0.525 Sum_probs=78.0
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
..+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cc
Q 043064 166 AF 167 (196)
Q Consensus 166 a~ 167 (196)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 39
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=4.3e-20 Score=126.74 Aligned_cols=86 Identities=21% Similarity=0.375 Sum_probs=79.8
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+.+++++|+++|++|| |..|.|+.++.++.++|||||+|.+.++|++|| .||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 445678999999999999999999999997 999999999889999999999999999999999 899999999999999
Q ss_pred EcccCCCC
Q 043064 165 WAFSNGPS 172 (196)
Q Consensus 165 ~a~~~~~~ 172 (196)
|+.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dng_A 89 IAEGRKQD 96 (103)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 99876643
No 40
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.2e-20 Score=130.27 Aligned_cols=89 Identities=28% Similarity=0.461 Sum_probs=82.8
Q ss_pred CCCCCCCEEEEcCCCccCcHHHHHHhhccCCCee--------EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCce
Q 043064 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIR--------NLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGE 155 (196)
Q Consensus 84 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~ 155 (196)
....+.++|||+|||+.+++++|+++|++||.|. .|.|+.++.++.++|||||+|.+.++|++||..||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3556789999999999999999999999999999 69999998899999999999999999999999999999
Q ss_pred eCCcEeEEEEcccCCCC
Q 043064 156 LLTQTLTVDWAFSNGPS 172 (196)
Q Consensus 156 l~g~~l~v~~a~~~~~~ 172 (196)
|.|+.|+|.|+.++...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999887654
No 41
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=128.00 Aligned_cols=86 Identities=19% Similarity=0.329 Sum_probs=79.3
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCC---CCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEE
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRR---TGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v 163 (196)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.++. ++.++|||||+|.+.++|++|+..||+..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568899999999999999999999999999999998765 5689999999999999999999999999999999999
Q ss_pred EEcccCCCC
Q 043064 164 DWAFSNGPS 172 (196)
Q Consensus 164 ~~a~~~~~~ 172 (196)
.|+.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876644
No 42
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=1.4e-20 Score=127.52 Aligned_cols=84 Identities=23% Similarity=0.455 Sum_probs=79.7
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
+.++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|.|+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46789999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred cCCC
Q 043064 168 SNGP 171 (196)
Q Consensus 168 ~~~~ 171 (196)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7654
No 43
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.1e-20 Score=126.18 Aligned_cols=84 Identities=27% Similarity=0.412 Sum_probs=79.3
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|+..||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567889999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred Eccc
Q 043064 165 WAFS 168 (196)
Q Consensus 165 ~a~~ 168 (196)
|+++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 44
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=125.60 Aligned_cols=83 Identities=23% Similarity=0.354 Sum_probs=78.2
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34457889999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred Ecc
Q 043064 165 WAF 167 (196)
Q Consensus 165 ~a~ 167 (196)
||+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 984
No 45
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=128.04 Aligned_cols=87 Identities=23% Similarity=0.408 Sum_probs=81.1
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCee-EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcE----
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIR-NLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQT---- 160 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~-~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~---- 160 (196)
..+.++|||+|||+.+++++|+++|++||.|. .|.|+.++.++.++|||||+|.+.++|++|+..||+..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34578999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred eEEEEcccCCCC
Q 043064 161 LTVDWAFSNGPS 172 (196)
Q Consensus 161 l~v~~a~~~~~~ 172 (196)
|+|.|+.+....
T Consensus 86 l~v~~a~~~~~~ 97 (99)
T 2div_A 86 FKLNYATYSGPS 97 (99)
T ss_dssp CCEEETTCCSSS
T ss_pred EEEeecCCCCCC
Confidence 999999776543
No 46
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.84 E-value=1.9e-20 Score=129.09 Aligned_cols=89 Identities=26% Similarity=0.378 Sum_probs=82.1
Q ss_pred CCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee---CCc
Q 043064 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGEL---LTQ 159 (196)
Q Consensus 83 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l---~g~ 159 (196)
+....+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..+ .|+
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 33455678999999999999999999999999999999999988999999999999999999999999999987 899
Q ss_pred EeEEEEcccCCC
Q 043064 160 TLTVDWAFSNGP 171 (196)
Q Consensus 160 ~l~v~~a~~~~~ 171 (196)
.|+|.|+.++..
T Consensus 87 ~l~v~~a~~~~~ 98 (106)
T 2dgp_A 87 PIQVKPADSESR 98 (106)
T ss_dssp CCEEEECCCCSC
T ss_pred eEEEEECCcccc
Confidence 999999987654
No 47
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9e-20 Score=125.06 Aligned_cols=88 Identities=19% Similarity=0.356 Sum_probs=79.8
Q ss_pred CCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeE
Q 043064 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLT 162 (196)
Q Consensus 83 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~ 162 (196)
+....+.++|||+|||+.+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|++|+..||+..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456679999999999999999999999999999999998753 3789999999999999999999999999999999
Q ss_pred EEEcccCCCC
Q 043064 163 VDWAFSNGPS 172 (196)
Q Consensus 163 v~~a~~~~~~ 172 (196)
|.|+.++...
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cq3_A 87 VNNATARVMT 96 (103)
T ss_dssp EEECCSSCCC
T ss_pred EEEcccCCCC
Confidence 9999887754
No 48
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.84 E-value=2e-21 Score=143.62 Aligned_cols=133 Identities=15% Similarity=0.285 Sum_probs=101.7
Q ss_pred CCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhh---cccCCCCCCC--CCCCCCCCCEEEEcCCCccCcHHH
Q 043064 31 PRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRN---FESLGTDGGP--GPQRSIEGWIILVTGVHEEAQEDD 105 (196)
Q Consensus 31 ~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~l~V~nLp~~~te~~ 105 (196)
+...+..+++. .+++++|||||.|.+.+.+.... .. +++....... ......+.++|||+|||+.+++++
T Consensus 29 ~i~~v~i~~~~----~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~g~~i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~ 103 (167)
T 2cjk_A 29 TVTDLKIMKDP----ATGRSRGFGFLSFEKPSSVDEVV-KTQHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKE 103 (167)
T ss_dssp CEEEEECCCCT----TTSSCCSCEEEEESSTHHHHHHH-HSCCEETTEECCCEECCCHHHHHHCEEEEEEEECTTCCHHH
T ss_pred CEEEEEEEECC----CCCCccceEEEEEccHHHHHHHH-hcccccCCeEcccccccchhhccCCCeEEECCCCCCCCHHH
Confidence 33444445554 35678999999999655554432 22 1111111111 111123467899999999999999
Q ss_pred HHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccC
Q 043064 106 LQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSN 169 (196)
Q Consensus 106 L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~ 169 (196)
|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++ +++..|+|+.|.|.||.|+
T Consensus 104 l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 104 FEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 99999999999999999998899999999999999999999997 8999999999999999876
No 49
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.84 E-value=2.6e-20 Score=137.63 Aligned_cols=119 Identities=28% Similarity=0.347 Sum_probs=97.9
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcccCCCCCC-------CCCCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEE
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFESLGTDGG-------PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNL 119 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v 119 (196)
+++++|++|+.|.+.+. +..+...++.....+. .......+.++|||+|||..+++++|+.+|++||.|..+
T Consensus 41 ~~~~~g~afV~f~~~~~-A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~ 119 (168)
T 1b7f_A 41 TGYSYGYAFVDFTSEMD-SQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQK 119 (168)
T ss_dssp TTEECSEEEEEESSHHH-HHHHHHHHTTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEE
T ss_pred CCccceEEEEEECCHHH-HHHHHHhcCCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEE
Confidence 45788999999995444 4434444444433322 122334567899999999999999999999999999999
Q ss_pred EEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--cEeEEEEc
Q 043064 120 HLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLT--QTLTVDWA 166 (196)
Q Consensus 120 ~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g--~~l~v~~a 166 (196)
.++.+..++.++|||||+|.+.++|.+|+..|||..+.| ++|+|.||
T Consensus 120 ~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 120 NILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999998899999999999999999999999999999988 99999986
No 50
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=128.41 Aligned_cols=87 Identities=22% Similarity=0.366 Sum_probs=80.8
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhcc-CCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCce-eCCcEeE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGE-YGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGE-LLTQTLT 162 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~-l~g~~l~ 162 (196)
...+.++|||+|||+.+++++|+.+|++ ||.|..|.|+.++ ++.++|||||+|.+.++|.+||..||+.. |.|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456788999999999999999999999 9999999999997 99999999999999999999999999999 9999999
Q ss_pred EEEcccCCCC
Q 043064 163 VDWAFSNGPS 172 (196)
Q Consensus 163 v~~a~~~~~~ 172 (196)
|.|+.++...
T Consensus 84 v~~a~~~~~~ 93 (104)
T 2dhg_A 84 LSVAIPKASR 93 (104)
T ss_dssp CCBCCCCCSC
T ss_pred EEEccCCCcC
Confidence 9999776644
No 51
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.84 E-value=2.9e-20 Score=138.02 Aligned_cols=116 Identities=24% Similarity=0.397 Sum_probs=96.5
Q ss_pred CCcCcccccCCCcHHHHHHhhhhcccCCCCCCC-------CCCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEE
Q 043064 49 KTKGRGFREEADSERHSRLADRNFESLGTDGGP-------GPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHL 121 (196)
Q Consensus 49 ~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 121 (196)
+++|+|||.|.+.+.+.. +. .+++....+.+ ........++|||+|||+.+++++|+++|++||.|..+.+
T Consensus 49 ~~~g~afV~f~~~~~A~~-A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i 126 (172)
T 2g4b_A 49 QDKNFAFLEFRSVDETTQ-AM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 126 (172)
T ss_dssp TTTTEEEEEESSHHHHHH-HG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred CCCCEEEEEeCCHHHHHH-HH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEE
Confidence 578999999995554444 43 45554333321 1122334688999999999999999999999999999999
Q ss_pred eecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEc
Q 043064 122 NLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166 (196)
Q Consensus 122 ~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a 166 (196)
+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.||
T Consensus 127 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 127 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp EECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 999889999999999999999999999999999999999999997
No 52
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=124.86 Aligned_cols=85 Identities=26% Similarity=0.515 Sum_probs=78.3
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCC-cceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGF-VKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~-~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
...++|||+|||+++++++|+++|++||.|..|.|+.+..++. ++|||||+|.+.++|++|+..|||..|.|+.|+|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4568899999999999999999999999999999998876665 899999999999999999999999999999999999
Q ss_pred cccCCC
Q 043064 166 AFSNGP 171 (196)
Q Consensus 166 a~~~~~ 171 (196)
+.+..+
T Consensus 82 a~~~~~ 87 (88)
T 4a8x_A 82 VLAPWP 87 (88)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 976553
No 53
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.84 E-value=4e-20 Score=126.00 Aligned_cols=85 Identities=26% Similarity=0.427 Sum_probs=79.8
Q ss_pred CCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeE--------EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCc
Q 043064 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRN--------LHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGG 154 (196)
Q Consensus 83 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~ 154 (196)
+....+.++|||+|||+++++++|+++|++||.|.. |.++.++.+|.++|||||+|.+.++|++|++.|||.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 445566899999999999999999999999999999 999999889999999999999999999999999999
Q ss_pred eeCCcEeEEEEcc
Q 043064 155 ELLTQTLTVDWAF 167 (196)
Q Consensus 155 ~l~g~~l~v~~a~ 167 (196)
.|.|+.|+|.||+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999984
No 54
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=2.3e-20 Score=129.48 Aligned_cols=86 Identities=29% Similarity=0.453 Sum_probs=81.1
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+.+++++|+.+|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|+|..|.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCC
Q 043064 165 WAFSNG 170 (196)
Q Consensus 165 ~a~~~~ 170 (196)
|+.++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998764
No 55
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=2.5e-20 Score=130.63 Aligned_cols=82 Identities=24% Similarity=0.340 Sum_probs=75.3
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEccc
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~ 168 (196)
..+|||+|||+.+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|++||..|++..|.|+.|+|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5679999999999999999999999999999999884 44789999999999999999999999999999999999987
Q ss_pred CCCC
Q 043064 169 NGPS 172 (196)
Q Consensus 169 ~~~~ 172 (196)
+...
T Consensus 83 ~~~~ 86 (115)
T 4f25_A 83 RKER 86 (115)
T ss_dssp CCC-
T ss_pred cccc
Confidence 6543
No 56
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.84 E-value=2.9e-21 Score=129.53 Aligned_cols=83 Identities=17% Similarity=0.205 Sum_probs=72.8
Q ss_pred CEEEEcCCCccCcHHHHHHhhccCC--CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 90 WIILVTGVHEEAQEDDLQNVFGEYG--EIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 90 ~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
.+|||+|||+++++++|+++|++|| .|..+.++.++.+|+++|||||+|.+.++|++|++.|||..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4699999999999999999999999 99999999998899999999999999999999999999999999999999998
Q ss_pred cCCCC
Q 043064 168 SNGPS 172 (196)
Q Consensus 168 ~~~~~ 172 (196)
+.++.
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 87654
No 57
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.84 E-value=3.1e-21 Score=148.94 Aligned_cols=134 Identities=19% Similarity=0.233 Sum_probs=102.6
Q ss_pred CCCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCCCCCCC---------CCCCCCCCEEEEcCCCcc
Q 043064 30 SPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDGGPG---------PQRSIEGWIILVTGVHEE 100 (196)
Q Consensus 30 ~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~V~nLp~~ 100 (196)
+++..+..+++. .+++++|||||.|.+... +..+...++.....+... ........+|||+|||+.
T Consensus 40 G~I~~v~i~~d~----~tg~~~G~afV~F~~~~~-A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~ 114 (213)
T 4f02_A 40 GPILSIRVCRDM----ITRRSLGYAYVNFQQPAD-AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKS 114 (213)
T ss_dssp SCEEEEEEEECT----TTCCEEEEEEEEESSHHH-HHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEESCCTT
T ss_pred CCEEEEEEeccc----CCCCccccccceeCCHHH-HHHHHHHhhhhhcCCcccccccccccccccccccccceECCcccc
Confidence 344455555555 456899999999995444 443444444433322211 111224578999999999
Q ss_pred CcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccCC
Q 043064 101 AQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNG 170 (196)
Q Consensus 101 ~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~~ 170 (196)
+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+||+.|||..|+|+.|.|.||.++.
T Consensus 115 ~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 115 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred cHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 9999999999999999999999874 4479999999999999999999999999999999999998764
No 58
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.83 E-value=2.9e-21 Score=135.41 Aligned_cols=82 Identities=17% Similarity=0.300 Sum_probs=66.5
Q ss_pred CCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcE--
Q 043064 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQT-- 160 (196)
Q Consensus 83 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~-- 160 (196)
|+.....++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.||+..|.|+.
T Consensus 10 pp~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 10 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp -------CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 333455788999999999999999999999999999998754 89999999999999999999999999998
Q ss_pred ---eEEEEcccCCC
Q 043064 161 ---LTVDWAFSNGP 171 (196)
Q Consensus 161 ---l~v~~a~~~~~ 171 (196)
|+|..+.++..
T Consensus 83 ~~~i~v~~~~~~~~ 96 (115)
T 3beg_B 83 TAYIRVKVDGPRSP 96 (115)
T ss_dssp CCBCEEEECC----
T ss_pred eEEEEeccCCCCCC
Confidence 77777766543
No 59
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.83 E-value=8.6e-20 Score=125.27 Aligned_cols=81 Identities=20% Similarity=0.387 Sum_probs=73.9
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+.+++++|+++|++||.|..|.++ ++||||+|.+.++|++|+..||+..|.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 34557889999999999999999999999999999886 4699999999999999999999999999999999
Q ss_pred EcccCCCCC
Q 043064 165 WAFSNGPST 173 (196)
Q Consensus 165 ~a~~~~~~~ 173 (196)
|+.++....
T Consensus 79 ~a~~~~~~~ 87 (103)
T 2dgu_A 79 FAKPPDQKR 87 (103)
T ss_dssp ECCCCCCCC
T ss_pred EcCCCcccc
Confidence 998876553
No 60
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.83 E-value=7.6e-21 Score=130.06 Aligned_cols=82 Identities=22% Similarity=0.364 Sum_probs=78.3
Q ss_pred CCCEEEEcCCCc------cCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC-cE
Q 043064 88 EGWIILVTGVHE------EAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLT-QT 160 (196)
Q Consensus 88 ~~~~l~V~nLp~------~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g-~~ 160 (196)
..++|||+|||. .+++++|+++|++||.|..|.|+.++.+|+++|||||+|.+.++|++||+.|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 357899999999 99999999999999999999999999899999999999999999999999999999999 99
Q ss_pred eEEEEcccC
Q 043064 161 LTVDWAFSN 169 (196)
Q Consensus 161 l~v~~a~~~ 169 (196)
|+|.++.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999764
No 61
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.83 E-value=7.1e-21 Score=137.17 Aligned_cols=90 Identities=26% Similarity=0.404 Sum_probs=83.2
Q ss_pred CCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeE
Q 043064 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLT 162 (196)
Q Consensus 83 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~ 162 (196)
+....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..||+..|.|+.|+
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34455678899999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEEcccCCCC
Q 043064 163 VDWAFSNGPS 172 (196)
Q Consensus 163 v~~a~~~~~~ 172 (196)
|.|+++..+.
T Consensus 121 V~~a~~~~~~ 130 (135)
T 2lea_A 121 VQMARYGRPP 130 (135)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999877654
No 62
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4e-20 Score=127.26 Aligned_cols=88 Identities=15% Similarity=0.265 Sum_probs=81.7
Q ss_pred CCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEE
Q 043064 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163 (196)
Q Consensus 84 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v 163 (196)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||.. ++..|.|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3455678999999999999999999999999999999999988999999999999999999999998 999999999999
Q ss_pred EEcccCCCC
Q 043064 164 DWAFSNGPS 172 (196)
Q Consensus 164 ~~a~~~~~~ 172 (196)
.|+.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 2dh8_A 90 KPCTPRGMQ 98 (105)
T ss_dssp CCSCCSSCC
T ss_pred EEccCCCCC
Confidence 999877654
No 63
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-19 Score=123.74 Aligned_cols=86 Identities=17% Similarity=0.324 Sum_probs=79.3
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+.+++++|+.+|++||.|..|.|+.++.++.++|||||+|.+.++|++||. +++.|.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 44567889999999999999999999999999999999998899999999999999999999997 5789999999999
Q ss_pred EcccCCCC
Q 043064 165 WAFSNGPS 172 (196)
Q Consensus 165 ~a~~~~~~ 172 (196)
|+.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99887654
No 64
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.83 E-value=4.9e-20 Score=122.90 Aligned_cols=82 Identities=23% Similarity=0.365 Sum_probs=77.6
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEccc
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~ 168 (196)
.++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|+ .||+..|.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 478999999999999999999999999999999999889999999999999999999999 9999999999999999977
Q ss_pred CCC
Q 043064 169 NGP 171 (196)
Q Consensus 169 ~~~ 171 (196)
..+
T Consensus 85 ~~p 87 (89)
T 3ucg_A 85 NRP 87 (89)
T ss_dssp TSC
T ss_pred CCC
Confidence 543
No 65
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.83 E-value=5.9e-20 Score=123.35 Aligned_cols=87 Identities=22% Similarity=0.284 Sum_probs=79.6
Q ss_pred CCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEE
Q 043064 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163 (196)
Q Consensus 84 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v 163 (196)
....+.++|||+|||+.+++++|+.+|++||.|..|.|+.+ ++.++|||||+|.+.++|++|+..||+..|.|+.|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 3 SGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80 (92)
T ss_dssp CSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34556789999999999999999999999999999999874 7889999999999999999999999999999999999
Q ss_pred EEcccCCCC
Q 043064 164 DWAFSNGPS 172 (196)
Q Consensus 164 ~~a~~~~~~ 172 (196)
.|+.+....
T Consensus 81 ~~a~~~~~~ 89 (92)
T 2dgv_A 81 RIDRNASGP 89 (92)
T ss_dssp EECSCCSSC
T ss_pred EEcCCCCCC
Confidence 999876643
No 66
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.83 E-value=5.3e-20 Score=139.55 Aligned_cols=122 Identities=21% Similarity=0.359 Sum_probs=99.4
Q ss_pred CCCcCcccccCCCcHHHHHHhhhhcccCCCCCC---------C------------------CCCCCCCCCEEEEcCCCcc
Q 043064 48 KKTKGRGFREEADSERHSRLADRNFESLGTDGG---------P------------------GPQRSIEGWIILVTGVHEE 100 (196)
Q Consensus 48 ~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~---------~------------------~~~~~~~~~~l~V~nLp~~ 100 (196)
.+++|||||.|.+.+.+...- .+++....+. . ......+.++|||+|||+.
T Consensus 48 ~~~~g~afV~F~~~~~A~~Al--~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~ 125 (198)
T 2yh0_A 48 NQDKNFAFLEFRSVDETTQAM--AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNY 125 (198)
T ss_dssp ETTTTEEEEEESCSHHHHHHG--GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTT
T ss_pred cCCCCEEEEEeCCHHHHHHHH--HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCC
Confidence 367899999999655555533 3333222111 0 0011245799999999999
Q ss_pred CcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccCCC
Q 043064 101 AQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGP 171 (196)
Q Consensus 101 ~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~~~ 171 (196)
+++++|+.+|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..||+..|+|+.|.|.|+.++..
T Consensus 126 ~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 126 LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp CCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999988999999999999999999999999999999999999999988764
No 67
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=2.7e-20 Score=133.09 Aligned_cols=87 Identities=28% Similarity=0.486 Sum_probs=81.7
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|++||..||+..|.|+.|+|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567889999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCCC
Q 043064 165 WAFSNGP 171 (196)
Q Consensus 165 ~a~~~~~ 171 (196)
|+.++.+
T Consensus 122 ~a~~~~p 128 (129)
T 2kxn_B 122 FSITKRP 128 (129)
T ss_dssp CCSSSSC
T ss_pred EecCCCC
Confidence 9987664
No 68
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2e-19 Score=123.36 Aligned_cols=86 Identities=19% Similarity=0.392 Sum_probs=78.0
Q ss_pred CCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEE
Q 043064 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163 (196)
Q Consensus 84 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v 163 (196)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+ ++|||||+|.+.++|++|+..||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 34556799999999999999999999999999999999987433 5899999999999999999999999999999999
Q ss_pred EEcccCCC
Q 043064 164 DWAFSNGP 171 (196)
Q Consensus 164 ~~a~~~~~ 171 (196)
.|+.++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqi_A 88 NWATTPSS 95 (103)
T ss_dssp EECCCTTC
T ss_pred EECCCCcc
Confidence 99987654
No 69
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=7.4e-20 Score=126.28 Aligned_cols=84 Identities=23% Similarity=0.371 Sum_probs=78.5
Q ss_pred CCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeE
Q 043064 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLT 162 (196)
Q Consensus 83 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~ 162 (196)
+....+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3345668999999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred EEEcc
Q 043064 163 VDWAF 167 (196)
Q Consensus 163 v~~a~ 167 (196)
|.|+.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99985
No 70
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.1e-19 Score=124.51 Aligned_cols=86 Identities=22% Similarity=0.339 Sum_probs=77.2
Q ss_pred CCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeE
Q 043064 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLT 162 (196)
Q Consensus 83 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~ 162 (196)
+....+.++|||+|||+.+++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++||+.||+..|.|+.|+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 33455678999999999999999999999999999999864 455789999999999999999999999999999999
Q ss_pred EEEcccCCC
Q 043064 163 VDWAFSNGP 171 (196)
Q Consensus 163 v~~a~~~~~ 171 (196)
|.|+.++..
T Consensus 93 V~~a~~~~~ 101 (109)
T 1x4a_A 93 VEFPRSGRG 101 (109)
T ss_dssp EECCCCCCC
T ss_pred EEEcccCCC
Confidence 999977654
No 71
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.82 E-value=6.3e-20 Score=135.21 Aligned_cols=119 Identities=24% Similarity=0.403 Sum_probs=96.5
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcccCCCCCC-------CCCCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEE
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFESLGTDGG-------PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNL 119 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v 119 (196)
+++++|++|+.|.+.+. +..+...+++....+. .........++|||+|||..+++++|+.+|++||.|..+
T Consensus 40 ~~~~~g~afV~f~~~~~-A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~ 118 (167)
T 1fxl_A 40 TGQSLGYGFVNYIDPKD-AEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 118 (167)
T ss_dssp TCCEEEEEEEEESSHHH-HHHHHHHHTTCEETTEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEE
T ss_pred CCcceeEEEEEECCHHH-HHHHHHHcCCCccCCceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEE
Confidence 45788999999995444 4434444444333322 112234457889999999999999999999999999999
Q ss_pred EEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCc--EeEEEEc
Q 043064 120 HLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQ--TLTVDWA 166 (196)
Q Consensus 120 ~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~--~l~v~~a 166 (196)
.++.+..+|.++|||||+|.+.++|.+|+..|||..|.|+ +|.|.||
T Consensus 119 ~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 119 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 9999888999999999999999999999999999999996 4888886
No 72
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.7e-19 Score=120.90 Aligned_cols=84 Identities=15% Similarity=0.200 Sum_probs=78.5
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
....++|||+|||+.+++++|+++|+.| .|..|.|+.+ .+|+++|||||+|.+.++|++||. ||+..|.|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4567899999999999999999999999 9999999998 789999999999999999999999 999999999999999
Q ss_pred cccCCCC
Q 043064 166 AFSNGPS 172 (196)
Q Consensus 166 a~~~~~~ 172 (196)
+.+++..
T Consensus 84 a~~~~~s 90 (91)
T 2dgw_A 84 EKSGPSS 90 (91)
T ss_dssp ESSCCCC
T ss_pred CCcCCCC
Confidence 9887643
No 73
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=6.7e-20 Score=123.79 Aligned_cols=84 Identities=20% Similarity=0.315 Sum_probs=77.5
Q ss_pred CCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEE
Q 043064 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163 (196)
Q Consensus 84 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v 163 (196)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|+..||+..|.|+.|+|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 344567899999999999999999999999999999999987 4899999999999999999999999999999999999
Q ss_pred EEccc
Q 043064 164 DWAFS 168 (196)
Q Consensus 164 ~~a~~ 168 (196)
.|++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99854
No 74
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=9e-20 Score=126.94 Aligned_cols=88 Identities=20% Similarity=0.300 Sum_probs=79.7
Q ss_pred CCCCCCEEEEcCCCccCcHHHHH---HhhccCCCeeEEEEeecCCCC---CcceEEEEEecCHHHHHHHHHHhCCceeCC
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQ---NVFGEYGEIRNLHLNLDRRTG---FVKGYALIEYENFEEAQNAITAMNGGELLT 158 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~---~~F~~~G~i~~v~i~~~~~~g---~~~g~afv~f~~~~~a~~al~~l~~~~l~g 158 (196)
+....++|||+|||+.+++++|+ ++|++||.|..|.|+.+..++ .++|||||+|.+.++|++||+.||+..|.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 45567889999999999999999 999999999999998886643 556999999999999999999999999999
Q ss_pred cEeEEEEcccCCCC
Q 043064 159 QTLTVDWAFSNGPS 172 (196)
Q Consensus 159 ~~l~v~~a~~~~~~ 172 (196)
+.|+|.||.++...
T Consensus 91 r~l~V~~a~~k~~~ 104 (111)
T 2cpi_A 91 RTLKASLGTTKYCS 104 (111)
T ss_dssp EEEEEESCCCCSCS
T ss_pred EEEEEEeccccccc
Confidence 99999999888754
No 75
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=1.3e-19 Score=120.50 Aligned_cols=81 Identities=17% Similarity=0.373 Sum_probs=75.7
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++ +++..|.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999995 58889999999999
Q ss_pred Ec
Q 043064 165 WA 166 (196)
Q Consensus 165 ~a 166 (196)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 76
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.8e-20 Score=126.08 Aligned_cols=87 Identities=17% Similarity=0.271 Sum_probs=80.0
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCC-eeEEEEe-ecCCCCCcceEEEEEecCHHHHHHHHHHhC--CceeCCcEe
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGE-IRNLHLN-LDRRTGFVKGYALIEYENFEEAQNAITAMN--GGELLTQTL 161 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~-~~~~~g~~~g~afv~f~~~~~a~~al~~l~--~~~l~g~~l 161 (196)
+.+.++|||+|||+.+++++|+.+|.+||. |..|.|+ .++.++.++|||||+|.+.++|..|+..|+ +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 456789999999999999999999999998 9999998 787888999999999999999999999996 589999999
Q ss_pred EEEEcccCCCC
Q 043064 162 TVDWAFSNGPS 172 (196)
Q Consensus 162 ~v~~a~~~~~~ 172 (196)
+|.|+.++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999887654
No 77
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.82 E-value=4.6e-20 Score=132.09 Aligned_cols=89 Identities=16% Similarity=0.321 Sum_probs=81.4
Q ss_pred CCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeE--EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCc----ee
Q 043064 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRN--LHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGG----EL 156 (196)
Q Consensus 83 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~----~l 156 (196)
+......++|||+|||+.+|+++|+++|++||.|.. |.|+.++.+|+++|||||+|.+. +|.+|+..||+. .|
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 344566789999999999999999999999999976 99999988999999999999999 999999999999 99
Q ss_pred CCcEeEEEEcccCCCC
Q 043064 157 LTQTLTVDWAFSNGPS 172 (196)
Q Consensus 157 ~g~~l~v~~a~~~~~~ 172 (196)
.|+.|.|.|+.+....
T Consensus 96 ~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 96 DGKTINVEFAKGSKRD 111 (131)
T ss_dssp GGCCCCCEECCCSCCC
T ss_pred CCEEEEEEECCCCCCC
Confidence 9999999999876543
No 78
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.4e-20 Score=128.07 Aligned_cols=85 Identities=34% Similarity=0.490 Sum_probs=80.1
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEc
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a 166 (196)
.+.++|||+|||+.+++++|+.+|++||.|..|.++.++.+|.++|||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34578999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 043064 167 FSNGP 171 (196)
Q Consensus 167 ~~~~~ 171 (196)
.++..
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 87654
No 79
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=122.99 Aligned_cols=82 Identities=17% Similarity=0.278 Sum_probs=75.8
Q ss_pred CCCCEEEEcCCCccCcHHHHH----HhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeE
Q 043064 87 IEGWIILVTGVHEEAQEDDLQ----NVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLT 162 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~ 162 (196)
.+.++|||+|||+.+++++|+ ++|++||.|..|.|+.++.+ +|||||+|.+.++|++|+..||+..|.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356889999999999999999 99999999999999988655 78999999999999999999999999999999
Q ss_pred EEEcccCCC
Q 043064 163 VDWAFSNGP 171 (196)
Q Consensus 163 v~~a~~~~~ 171 (196)
|.|+.+.+.
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999977654
No 80
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.82 E-value=1.3e-19 Score=134.64 Aligned_cols=133 Identities=18% Similarity=0.308 Sum_probs=100.2
Q ss_pred CCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCCCCC-----------CCCCCCCCCCEEEEcCCCc
Q 043064 31 PRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDGG-----------PGPQRSIEGWIILVTGVHE 99 (196)
Q Consensus 31 ~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~V~nLp~ 99 (196)
++..+..+++..+ +..+++|||||.|.+.+ .+..+...++....... .........++|||+|||+
T Consensus 29 ~i~~v~i~~~~~~--~~~~~~g~afV~f~~~~-~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~ 105 (175)
T 3nmr_A 29 AVYEINVLRDRSQ--NPPQSKGCCFVTFYTRK-AALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISK 105 (175)
T ss_dssp CEEEEEEEEECSS--SSCEEEEEEEEEESSHH-HHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCSCGGGSEEEEESCCT
T ss_pred CEEEEEEEecCCC--CCCCcceEEEEEECCHH-HHHHHHHHhcCcEEccCCccceEEccccccccccCCCCeEEEcCCCC
Confidence 3344555555422 12378999999999544 44444444544332211 1122233578999999999
Q ss_pred cCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC---CcEeEEEEcc
Q 043064 100 EAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELL---TQTLTVDWAF 167 (196)
Q Consensus 100 ~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~---g~~l~v~~a~ 167 (196)
.+|+++|+++|++||.|..+.++.+. +|.++|||||+|.+.++|.+|+..|||..+. +++|.|.||.
T Consensus 106 ~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 106 KCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred cCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99999999999999999999999885 6899999999999999999999999998765 4999999983
No 81
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=1e-19 Score=127.84 Aligned_cols=83 Identities=27% Similarity=0.427 Sum_probs=78.0
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred Ecc
Q 043064 165 WAF 167 (196)
Q Consensus 165 ~a~ 167 (196)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 984
No 82
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=123.40 Aligned_cols=84 Identities=18% Similarity=0.186 Sum_probs=77.9
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
....++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|+..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34468899999999999999999999999999888888888999999999999999999999999999999999999999
Q ss_pred cccC
Q 043064 166 AFSN 169 (196)
Q Consensus 166 a~~~ 169 (196)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8654
No 83
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=126.95 Aligned_cols=84 Identities=15% Similarity=0.316 Sum_probs=79.0
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
+.++|||+|||+.+++++|+.+|++||.|..|.|+.++.++.++|||||+|.+.++|++||.. ++..|.|+.|.|.|+.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 458999999999999999999999999999999999988999999999999999999999987 9999999999999998
Q ss_pred cCCCC
Q 043064 168 SNGPS 172 (196)
Q Consensus 168 ~~~~~ 172 (196)
++...
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 87653
No 84
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=133.69 Aligned_cols=83 Identities=18% Similarity=0.217 Sum_probs=77.9
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCC--CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYG--EIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
..++|||+|||+++++++|+++|+.|| .|..|.|+.++.+|+++|||||+|.+.++|++||..|||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 043064 166 AFSNG 170 (196)
Q Consensus 166 a~~~~ 170 (196)
+.++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 97643
No 85
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9e-20 Score=125.42 Aligned_cols=82 Identities=15% Similarity=0.312 Sum_probs=76.2
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.++. +.++|||||+|.+.++|.+||. +++..|+|+.|.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 344568899999999999999999999999999999999976 9999999999999999999998 89999999999999
Q ss_pred Eccc
Q 043064 165 WAFS 168 (196)
Q Consensus 165 ~a~~ 168 (196)
|+..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 9765
No 86
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.5e-20 Score=125.25 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=73.2
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC--ceeCCcEeEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNG--GELLTQTLTV 163 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~--~~l~g~~l~v 163 (196)
..+.++|||+|||+.+|+++|+++|++||.|.+|.|+.+ +|||||+|.+.++|+.|++.|++ ..|.|++|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345788999999999999999999999999999999865 79999999999999999998864 7899999999
Q ss_pred EEcccCCCC
Q 043064 164 DWAFSNGPS 172 (196)
Q Consensus 164 ~~a~~~~~~ 172 (196)
.|+.++...
T Consensus 87 ~~A~~~~~~ 95 (105)
T 1sjq_A 87 QFSNHKELK 95 (105)
T ss_dssp CCCSSSSCC
T ss_pred EEcCCCCCC
Confidence 999877654
No 87
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.3e-19 Score=120.96 Aligned_cols=82 Identities=28% Similarity=0.378 Sum_probs=74.7
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC--CcEeE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELL--TQTLT 162 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~--g~~l~ 162 (196)
...+.++|||+|||+.+++++|+++|++||.|..|.+..+ +|||||+|.+.++|++|+..||+..|. |+.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 4456788999999999999999999999999999988754 689999999999999999999999999 99999
Q ss_pred EEEcccCCCC
Q 043064 163 VDWAFSNGPS 172 (196)
Q Consensus 163 v~~a~~~~~~ 172 (196)
|.|+.+++.+
T Consensus 87 V~~a~~~~~~ 96 (97)
T 1why_A 87 VDFAKSGPSS 96 (97)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999887653
No 88
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=5.8e-19 Score=120.74 Aligned_cols=86 Identities=30% Similarity=0.526 Sum_probs=77.3
Q ss_pred CCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEE
Q 043064 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163 (196)
Q Consensus 84 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v 163 (196)
....+.++|||+|||+.+++++|+++|+.|+ .|.++.++.++.++|||||+|.+.++|++||..||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3456678999999999999999999999874 6777788789999999999999999999999999999999999999
Q ss_pred EEcccCCCC
Q 043064 164 DWAFSNGPS 172 (196)
Q Consensus 164 ~~a~~~~~~ 172 (196)
.|++++...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2fc8_A 87 DWAKPKGEG 95 (102)
T ss_dssp EECCCCCSS
T ss_pred EEecCCCCC
Confidence 999877653
No 89
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.81 E-value=2.1e-19 Score=127.21 Aligned_cols=82 Identities=27% Similarity=0.367 Sum_probs=77.8
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEccc
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~ 168 (196)
.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|+ .||+..|.|+.|+|.|+.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 578999999999999999999999999999999999889999999999999999999999 7999999999999999976
Q ss_pred CCC
Q 043064 169 NGP 171 (196)
Q Consensus 169 ~~~ 171 (196)
..+
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 554
No 90
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.7e-19 Score=120.26 Aligned_cols=82 Identities=13% Similarity=0.175 Sum_probs=73.4
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh--CCceeCCcEeE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM--NGGELLTQTLT 162 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l--~~~~l~g~~l~ 162 (196)
...+.++|||+|||+.+++++|+.+|++||.|..|.|+.+ +|||||+|.+.++|..|+..| ++..|.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3456789999999999999999999999999999988754 799999999999999999976 46789999999
Q ss_pred EEEcccCCCC
Q 043064 163 VDWAFSNGPS 172 (196)
Q Consensus 163 v~~a~~~~~~ 172 (196)
|.|+.++...
T Consensus 85 V~~a~~~~~~ 94 (101)
T 2cq1_A 85 IQYSNHKELK 94 (101)
T ss_dssp EEECSCSSCC
T ss_pred EEEcCcccCc
Confidence 9999877654
No 91
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.81 E-value=1.6e-19 Score=134.63 Aligned_cols=117 Identities=21% Similarity=0.325 Sum_probs=93.4
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcccCCCCCC---------CCCCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCee
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFESLGTDGG---------PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIR 117 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 117 (196)
.++++|||||.|.+.+.+.. +. .++.....+. .......+.++|||+|||+.+++++|+.+|++||.|.
T Consensus 50 ~~~~~g~afV~f~~~~~a~~-A~-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~ 127 (175)
T 1fje_B 50 TGTNRKFGYVDFESAEDLEK-AL-ELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIR 127 (175)
T ss_dssp EETTTTEEEEEESSHHHHHH-HH-HGGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEE
T ss_pred CCccccEEEEEECCHHHHHH-HH-hcCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEE
Confidence 34689999999995555444 33 2554433321 1122334578999999999999999999999999887
Q ss_pred EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccCC
Q 043064 118 NLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNG 170 (196)
Q Consensus 118 ~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~~ 170 (196)
.+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.+++
T Consensus 128 ~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 128 LV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp EE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred Ee-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 66 3588899999999999999999999999999999999999998764
No 92
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.81 E-value=6.8e-19 Score=124.69 Aligned_cols=87 Identities=22% Similarity=0.340 Sum_probs=81.0
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++ +|.++|||||+|.+.++|++|+..||+..|.|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999987 99999999999999999999999999999999999999
Q ss_pred EcccCCCC
Q 043064 165 WAFSNGPS 172 (196)
Q Consensus 165 ~a~~~~~~ 172 (196)
||.+....
T Consensus 110 ~a~~~~~~ 117 (124)
T 2kt5_A 110 LVASQIDL 117 (124)
T ss_dssp EECCTTCC
T ss_pred EeCCCCCC
Confidence 99876654
No 93
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.2e-19 Score=123.03 Aligned_cols=84 Identities=17% Similarity=0.310 Sum_probs=78.1
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee--------
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGEL-------- 156 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l-------- 156 (196)
...+.++|||+|||+.+++++|+.+|++||.|..|.|+.++ ++.++|||||+|.+.++|++|+..|||..|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 44567899999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred CCcEeEEEEcccC
Q 043064 157 LTQTLTVDWAFSN 169 (196)
Q Consensus 157 ~g~~l~v~~a~~~ 169 (196)
.+++|.|.|+.|.
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999999754
No 94
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=6.3e-19 Score=118.44 Aligned_cols=80 Identities=21% Similarity=0.333 Sum_probs=73.6
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+.+++++|+++|++||.|..|.++ ++||||+|.+.++|++|+..||+..|.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 45567899999999999999999999999999999987 4499999999999999999999999999999999
Q ss_pred EcccCCCC
Q 043064 165 WAFSNGPS 172 (196)
Q Consensus 165 ~a~~~~~~ 172 (196)
|+.++...
T Consensus 78 ~a~~~~~~ 85 (92)
T 2dgt_A 78 LSTSRLRT 85 (92)
T ss_dssp ESSCCCSC
T ss_pred EccCCCCC
Confidence 99877654
No 95
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.3e-19 Score=122.96 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=72.2
Q ss_pred CCCCCCEEEEcCCCc-cCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCc--eeCCcEe
Q 043064 85 RSIEGWIILVTGVHE-EAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGG--ELLTQTL 161 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~--~l~g~~l 161 (196)
...+.++|||+|||+ .+|+++|+.+|++||.|.+|.|+.+ +|||||+|.+.++|..|+..||+. .|.|++|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 445788999999999 9999999999999999999999865 589999999999999999998864 5999999
Q ss_pred EEEEcccCC
Q 043064 162 TVDWAFSNG 170 (196)
Q Consensus 162 ~v~~a~~~~ 170 (196)
.|.||.+..
T Consensus 85 ~V~~a~~~~ 93 (102)
T 1x4d_A 85 RVHLSQKYK 93 (102)
T ss_dssp EEEEECCCT
T ss_pred EEEECCCCC
Confidence 999998654
No 96
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.1e-19 Score=121.89 Aligned_cols=84 Identities=23% Similarity=0.360 Sum_probs=76.0
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
.....++|||+|||+.+|+++|+++|++|| +..|.|+.++ +++++|||||+|.+.++|++|| .+|+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 445678999999999999999999999999 4599999997 9999999999999999999999 479999999999999
Q ss_pred EcccCCC
Q 043064 165 WAFSNGP 171 (196)
Q Consensus 165 ~a~~~~~ 171 (196)
++.+...
T Consensus 88 ~~~~~~~ 94 (102)
T 1wez_A 88 LNSTAGT 94 (102)
T ss_dssp EECCCCC
T ss_pred ECCCCCC
Confidence 9876553
No 97
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=3.3e-19 Score=151.31 Aligned_cols=89 Identities=25% Similarity=0.377 Sum_probs=82.4
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
..+.++|||+|||+.+|+++|..+|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 043064 166 AFSNGPSTG 174 (196)
Q Consensus 166 a~~~~~~~~ 174 (196)
+.++....+
T Consensus 179 a~~~~~~~~ 187 (437)
T 3pgw_S 179 ERGRTVKGW 187 (437)
T ss_pred eCCCCCCCC
Confidence 988765433
No 98
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.7e-19 Score=118.18 Aligned_cols=79 Identities=19% Similarity=0.345 Sum_probs=73.4
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
..+.++|||+|||+++++++|+++|++||.|..|.++ ++||||+|.+.++|++|+..||+..|.|+.|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999987 57999999999999999999999999999999999
Q ss_pred cccCCCC
Q 043064 166 AFSNGPS 172 (196)
Q Consensus 166 a~~~~~~ 172 (196)
+.++...
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9877654
No 99
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=7.8e-19 Score=119.94 Aligned_cols=83 Identities=28% Similarity=0.436 Sum_probs=75.1
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+.+++++|+++|++||.| .++.+ .+++++|||||+|.+.++|++||..||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45568999999999999999999999999987 45555 588899999999999999999999999999999999999
Q ss_pred EcccCCC
Q 043064 165 WAFSNGP 171 (196)
Q Consensus 165 ~a~~~~~ 171 (196)
|+.++..
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9987654
No 100
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.3e-20 Score=122.83 Aligned_cols=81 Identities=22% Similarity=0.354 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEc
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a 166 (196)
.+.++|||+|||+.+++++|+.+|++||.|..|.|+.++.++.++|||||+|.+.++|++|+..||+..|.|+.|+|.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999988765
Q ss_pred c
Q 043064 167 F 167 (196)
Q Consensus 167 ~ 167 (196)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 101
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=1.1e-19 Score=122.68 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=75.6
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
+.++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++||+.||+..|.|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 35889999999999999999999999999988888888899999999999999999999999999999999999999985
Q ss_pred c
Q 043064 168 S 168 (196)
Q Consensus 168 ~ 168 (196)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 102
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.80 E-value=8.3e-20 Score=124.77 Aligned_cols=84 Identities=17% Similarity=0.304 Sum_probs=75.4
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecC-CCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDR-RTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v 163 (196)
.....++|||+|||+.+++++|+.+|++|| |..|.|+.++ .+|+++|||||+|.+.++|.+|+ .|++..|.|+.|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 445679999999999999999999999999 9999999887 58999999999999999999999 89999999999999
Q ss_pred EEcccCC
Q 043064 164 DWAFSNG 170 (196)
Q Consensus 164 ~~a~~~~ 170 (196)
.++.++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9997754
No 103
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=125.84 Aligned_cols=83 Identities=20% Similarity=0.375 Sum_probs=78.4
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|| .||+..|.|+.|.|.|+.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3579999999999999999999999999999999999888999999999999999999999 999999999999999998
Q ss_pred cCCC
Q 043064 168 SNGP 171 (196)
Q Consensus 168 ~~~~ 171 (196)
++..
T Consensus 103 ~~~~ 106 (114)
T 2cq4_A 103 AEKN 106 (114)
T ss_dssp HHHH
T ss_pred CCcc
Confidence 7643
No 104
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.80 E-value=7.9e-20 Score=118.17 Aligned_cols=75 Identities=17% Similarity=0.379 Sum_probs=71.9
Q ss_pred EEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEc
Q 043064 91 IILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166 (196)
Q Consensus 91 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a 166 (196)
+|||+|||+.+++++|+.+|++||.|..|.++.++.++.++|||||+|.+.++|++|++ |++..|+|+.|.|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999998899999999999999999999997 9999999999999986
No 105
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.80 E-value=3.3e-19 Score=121.45 Aligned_cols=79 Identities=22% Similarity=0.330 Sum_probs=71.6
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCce--eCCcEeE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGE--LLTQTLT 162 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~--l~g~~l~ 162 (196)
...++++|||+|||..+|+++|+.+|++||.|.+|.++.. +|||||+|.+.++|.+|+..|++.. |.|++|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 3446789999999999999999999999999999998753 7899999999999999999999875 8899999
Q ss_pred EEEcccC
Q 043064 163 VDWAFSN 169 (196)
Q Consensus 163 v~~a~~~ 169 (196)
|+|++++
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9999765
No 106
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.80 E-value=3.2e-19 Score=123.81 Aligned_cols=86 Identities=17% Similarity=0.365 Sum_probs=76.6
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+.+++++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||..+ +..|+|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3445788999999999999999999999999999999999888999999999999999999999876 589999999999
Q ss_pred EcccCCC
Q 043064 165 WAFSNGP 171 (196)
Q Consensus 165 ~a~~~~~ 171 (196)
++.++..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987664
No 107
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.80 E-value=5.9e-19 Score=127.22 Aligned_cols=82 Identities=32% Similarity=0.538 Sum_probs=77.0
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+.+++++|+++|++||.|..+.|+.++.++.++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34467899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred Ec
Q 043064 165 WA 166 (196)
Q Consensus 165 ~a 166 (196)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 108
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.79 E-value=1.3e-19 Score=141.54 Aligned_cols=81 Identities=17% Similarity=0.227 Sum_probs=76.6
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCC--CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYG--EIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
..++|||+||++.+|+++|+++|++|| .|..|.|+.++.+++++|||||+|.+.++|++||+.||+..|.|+.|+|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 043064 166 AFS 168 (196)
Q Consensus 166 a~~ 168 (196)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 109
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.5e-19 Score=123.00 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC--ceeCCcEeEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNG--GELLTQTLTV 163 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~--~~l~g~~l~v 163 (196)
..++++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|++.|++ ..|.|++|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 446789999999999999999999999999999999865 79999999999999999998874 6799999999
Q ss_pred EEcccCCCC
Q 043064 164 DWAFSNGPS 172 (196)
Q Consensus 164 ~~a~~~~~~ 172 (196)
.|+.++...
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999887655
No 110
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5e-19 Score=122.78 Aligned_cols=85 Identities=19% Similarity=0.357 Sum_probs=77.6
Q ss_pred CCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEE
Q 043064 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163 (196)
Q Consensus 84 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v 163 (196)
....+.++|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|++|+..|||..|.|+.|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345567899999999999999999999999999999998874 347899999999999999999999999999999999
Q ss_pred EEcccCC
Q 043064 164 DWAFSNG 170 (196)
Q Consensus 164 ~~a~~~~ 170 (196)
.|+.++.
T Consensus 102 ~~a~~~~ 108 (109)
T 2err_A 102 NNATARV 108 (109)
T ss_dssp EECCCSC
T ss_pred EECCCCc
Confidence 9997753
No 111
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.79 E-value=2.7e-19 Score=118.30 Aligned_cols=73 Identities=23% Similarity=0.304 Sum_probs=69.2
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
+..|||+||++.+|+++|+++|.+||+|.++.++.+ +|||||+|.+.++|.+|++.||+..|.|++|+|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~------kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN------QGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC------CcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 567999999999999999999999999999998763 8999999999999999999999999999999999983
No 112
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=4.6e-20 Score=123.45 Aligned_cols=82 Identities=22% Similarity=0.375 Sum_probs=73.9
Q ss_pred CEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccC
Q 043064 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSN 169 (196)
Q Consensus 90 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~ 169 (196)
++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.+ |..|+..||+..|.|+.|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999888999999999999999 99999999999999999999999877
Q ss_pred CCC
Q 043064 170 GPS 172 (196)
Q Consensus 170 ~~~ 172 (196)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 113
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=3.9e-19 Score=121.44 Aligned_cols=77 Identities=19% Similarity=0.421 Sum_probs=72.3
Q ss_pred CEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccC
Q 043064 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSN 169 (196)
Q Consensus 90 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~ 169 (196)
++|||+|||+.+++++|+++|++||.|..|.++.+ ++|||||+|.+.++|++|+..||+..|.|+.|+|.|+.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999866 5899999999999999999999999999999999999887
Q ss_pred CC
Q 043064 170 GP 171 (196)
Q Consensus 170 ~~ 171 (196)
..
T Consensus 76 ~~ 77 (101)
T 2hvz_A 76 PR 77 (101)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 114
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-19 Score=126.85 Aligned_cols=87 Identities=21% Similarity=0.344 Sum_probs=74.9
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
..+.++|||+|||+.+|+++|+++|++||.|..+.+..+..++.++|||||+|.+.++|++|+..||+..|.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34678999999999999999999999999984432222223788899999999999999999999999999999999999
Q ss_pred cccCCCC
Q 043064 166 AFSNGPS 172 (196)
Q Consensus 166 a~~~~~~ 172 (196)
+.++...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9877654
No 115
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.79 E-value=5.3e-19 Score=121.85 Aligned_cols=83 Identities=24% Similarity=0.361 Sum_probs=75.7
Q ss_pred CCCCCEEEEcCCCccC------cHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCc
Q 043064 86 SIEGWIILVTGVHEEA------QEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQ 159 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~------te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~ 159 (196)
....++|||+|||+.+ |+++|+.+|++||.|..|.|+ +.+|.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3447899999999999 889999999999999999988 36889999999999999999999999999999998
Q ss_pred -EeEEEEcccCC
Q 043064 160 -TLTVDWAFSNG 170 (196)
Q Consensus 160 -~l~v~~a~~~~ 170 (196)
.|+|.|+....
T Consensus 90 ~~l~V~~a~~~~ 101 (105)
T 2nlw_A 90 HTFRVNLFTDFD 101 (105)
T ss_dssp CEEEEECSCCCC
T ss_pred ceEEEEEcchHh
Confidence 99999996543
No 116
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-18 Score=118.28 Aligned_cols=83 Identities=19% Similarity=0.344 Sum_probs=75.4
Q ss_pred CCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEE
Q 043064 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163 (196)
Q Consensus 84 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v 163 (196)
....+.++|||+|||+.+++++|+.+|++||.|..|.++.+ +|||||+|.+.++|++|+..||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 34456789999999999999999999999999999998754 789999999999999999999999999999999
Q ss_pred EEcccCCCC
Q 043064 164 DWAFSNGPS 172 (196)
Q Consensus 164 ~~a~~~~~~ 172 (196)
.|+.++...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2cpj_A 84 RFACHSASL 92 (99)
T ss_dssp EESSCCSCC
T ss_pred EEcCCCCCC
Confidence 999876643
No 117
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=116.90 Aligned_cols=80 Identities=24% Similarity=0.419 Sum_probs=72.8
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+.+++++|+.+|++||.|..|.++ ++||||+|.+.++|++|+..||+..|.|+.|+|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567889999999999999999999999999999987 3499999999999999999999999999999999
Q ss_pred EcccCCCC
Q 043064 165 WAFSNGPS 172 (196)
Q Consensus 165 ~a~~~~~~ 172 (196)
|+.+....
T Consensus 77 ~a~~~~~~ 84 (90)
T 2dnp_A 77 LSTKGQKK 84 (90)
T ss_dssp ESCCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 118
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-18 Score=119.09 Aligned_cols=82 Identities=22% Similarity=0.279 Sum_probs=72.6
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCc--eeCCcEeE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGG--ELLTQTLT 162 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~--~l~g~~l~ 162 (196)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|++. .|.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4456789999999999999999999999999999988754 789999999999999999988654 59999999
Q ss_pred EEEcccCCCC
Q 043064 163 VDWAFSNGPS 172 (196)
Q Consensus 163 v~~a~~~~~~ 172 (196)
|.|+.++...
T Consensus 85 V~~a~~~~~~ 94 (104)
T 1wex_A 85 FNYSTSKRIT 94 (104)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCcccc
Confidence 9999876543
No 119
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.79 E-value=6.7e-19 Score=141.03 Aligned_cols=124 Identities=20% Similarity=0.225 Sum_probs=100.5
Q ss_pred CCCCCcCcccccCCCcHHHHHHhhhhcccCCCCCC----------CCCCCCCCCCEEEEcCCCccC-cHHHHHHhhccCC
Q 043064 46 APKKTKGRGFREEADSERHSRLADRNFESLGTDGG----------PGPQRSIEGWIILVTGVHEEA-QEDDLQNVFGEYG 114 (196)
Q Consensus 46 ~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~V~nLp~~~-te~~L~~~F~~~G 114 (196)
.+++++|+|||.|.+...+ ..+...+++....+. ..+....+.++|||+|||+.+ ++++|+.+|+.||
T Consensus 132 ~~g~~~g~afV~f~~~~~a-~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G 210 (284)
T 3smz_A 132 RTGQSKGYGFAEYMKKDSA-ARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVH 210 (284)
T ss_dssp TTCCEEEEEEEEESSHHHH-HHHHHHHTTCEETTEECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSS
T ss_pred CCCccceEEEEEECCHHHH-HHHHHHhCCCEeCCcEEEEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCC
Confidence 3557899999999954444 334334444333221 112334567899999999995 9999999999999
Q ss_pred CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccCCC
Q 043064 115 EIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGP 171 (196)
Q Consensus 115 ~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~~~ 171 (196)
.|..+.|+.+. +|.++|+|||+|.+.++|.+|+..|||..|+|+.|.|.|+.++..
T Consensus 211 ~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 211 SPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp CCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred CeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 99999999885 899999999999999999999999999999999999999987764
No 120
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=120.82 Aligned_cols=81 Identities=19% Similarity=0.424 Sum_probs=74.8
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
....++|||+|||+.+++++|+.+|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|++..|.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345689999999999999999999999999999999865 78999999999999999999999999999999999
Q ss_pred cccCCCC
Q 043064 166 AFSNGPS 172 (196)
Q Consensus 166 a~~~~~~ 172 (196)
+.+++..
T Consensus 96 a~~~~~~ 102 (109)
T 1x4g_A 96 GKESPDM 102 (109)
T ss_dssp CCCCCSS
T ss_pred cCCCCCC
Confidence 9887654
No 121
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=7.4e-19 Score=125.19 Aligned_cols=84 Identities=19% Similarity=0.304 Sum_probs=75.0
Q ss_pred CCCCCCEEEEcCCCccCcHHHHH----HhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQ----NVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQT 160 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~ 160 (196)
...+.++|||+|||+.+++++|+ .+|++||.|..|.+. .+++++|||||+|.+.++|..|+..|||..|.|++
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 34567899999999999998876 699999999998775 36788999999999999999999999999999999
Q ss_pred eEEEEcccCCC
Q 043064 161 LTVDWAFSNGP 171 (196)
Q Consensus 161 l~v~~a~~~~~ 171 (196)
|+|.||.++..
T Consensus 102 l~V~~a~~~~~ 112 (127)
T 2a3j_A 102 LVITFSETPQS 112 (127)
T ss_dssp CEEEECCCCCH
T ss_pred EEEEEccCcch
Confidence 99999987653
No 122
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2e-18 Score=118.74 Aligned_cols=84 Identities=13% Similarity=0.211 Sum_probs=76.6
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeE-EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRN-LHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v 163 (196)
.....++|||+|||+.+++++|+++|++||.|.. |.|+.+ .+|+++|||||+|.+.++|++||.. ++..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3456789999999999999999999999999987 888888 6999999999999999999999987 999999999999
Q ss_pred EEcccCC
Q 043064 164 DWAFSNG 170 (196)
Q Consensus 164 ~~a~~~~ 170 (196)
.++.+..
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 9986544
No 123
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-19 Score=117.12 Aligned_cols=77 Identities=18% Similarity=0.396 Sum_probs=73.2
Q ss_pred CEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 90 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
++|||+|||+.+++++|+.+|++||.|..+.++.++.++.++|||||+|.+.++|++|+..++ ..|+|+.|.|.+|.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a~ 77 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVAF 77 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEecC
Confidence 469999999999999999999999999999999998889999999999999999999999999 99999999999873
No 124
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.5e-19 Score=123.14 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=77.3
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCe-eEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEI-RNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
..+.++|||+|||+.+|+++|+++|+.||.| ..|.|+.++ +|+++|||||+|.+.++|++||.. |+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3457889999999999999999999999999 889999997 999999999999999999999986 9999999999999
Q ss_pred EcccCC
Q 043064 165 WAFSNG 170 (196)
Q Consensus 165 ~a~~~~ 170 (196)
++.++.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 998765
No 125
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.1e-18 Score=115.94 Aligned_cols=79 Identities=22% Similarity=0.309 Sum_probs=72.2
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccC--CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEY--GEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLT 162 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~ 162 (196)
...+.++|||+|||+.+++++|+.+|++| |.|..|.+. +|||||+|.+.++|++|+..||+..|.|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34567899999999999999999999999 899988765 67999999999999999999999999999999
Q ss_pred EEEcccCCC
Q 043064 163 VDWAFSNGP 171 (196)
Q Consensus 163 v~~a~~~~~ 171 (196)
|.|+.++..
T Consensus 83 v~~a~~~~~ 91 (99)
T 2cpd_A 83 VTLAKPVDK 91 (99)
T ss_dssp EECCCCCCC
T ss_pred EEECCCCCC
Confidence 999987654
No 126
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=114.99 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=72.3
Q ss_pred CCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh-CCceeCCcEe
Q 043064 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAM-NGGELLTQTL 161 (196)
Q Consensus 83 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l-~~~~l~g~~l 161 (196)
+....+.++|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|+..| ++..+.|+.|
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 334556788999999999999999999999999999999864 789999999999999999988 9999999999
Q ss_pred EEEEcc
Q 043064 162 TVDWAF 167 (196)
Q Consensus 162 ~v~~a~ 167 (196)
+|.||+
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 999984
No 127
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.78 E-value=6.1e-19 Score=141.81 Aligned_cols=121 Identities=21% Similarity=0.364 Sum_probs=93.5
Q ss_pred CCCcCcccccCCCcHHHHHHhhhhcccCCCCCC--------CCC------CCCCCCCEEEEcCCCcc-CcHHHHHHhhcc
Q 043064 48 KKTKGRGFREEADSERHSRLADRNFESLGTDGG--------PGP------QRSIEGWIILVTGVHEE-AQEDDLQNVFGE 112 (196)
Q Consensus 48 ~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~------~~~~~~~~l~V~nLp~~-~te~~L~~~F~~ 112 (196)
++++|||||.|.+... +..+...+++....+. +.. ....+.++|||+|||+. +++++|+.+|++
T Consensus 156 ~~~~g~afV~f~~~~~-a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~ 234 (292)
T 2ghp_A 156 NTSRRFAYIDVTSKED-ARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEG 234 (292)
T ss_dssp ---CCEEEEECSSHHH-HHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGG
T ss_pred CCcceEEEEEECCHHH-HHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhc
Confidence 4688999999995444 4434444444333221 110 22345789999999999 999999999999
Q ss_pred CCCeeEEEEeecCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccCC
Q 043064 113 YGEIRNLHLNLDRR-TGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNG 170 (196)
Q Consensus 113 ~G~i~~v~i~~~~~-~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~~ 170 (196)
||.|..|.|+.+.. +|.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.|+.+++
T Consensus 235 ~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 235 FGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp GSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred cCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 99999999998765 4899999999999999999999 999999999999999998864
No 128
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-19 Score=124.03 Aligned_cols=85 Identities=13% Similarity=0.270 Sum_probs=76.6
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
..+.++|||+|||+.+++++|+.+|++||.|.. .++.+..++.++|||||+|.+.++|++||+ ||+..|.|+.|+|.|
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345789999999999999999999999999887 566666688899999999999999999998 999999999999999
Q ss_pred cccCCCC
Q 043064 166 AFSNGPS 172 (196)
Q Consensus 166 a~~~~~~ 172 (196)
+.++...
T Consensus 92 a~~~~~~ 98 (101)
T 1fj7_A 92 PKGRDGT 98 (101)
T ss_dssp CSCCCCS
T ss_pred cCCCCCC
Confidence 9876654
No 129
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=117.08 Aligned_cols=82 Identities=24% Similarity=0.279 Sum_probs=72.9
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
.....++|||+|||+.+++++|+.+|++||.|. +.++. +.++|||||+|.+.++|++|+..||+..|.|+.|+|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 344578999999999999999999999999996 66654 3568999999999999999999999999999999999
Q ss_pred EcccCCC
Q 043064 165 WAFSNGP 171 (196)
Q Consensus 165 ~a~~~~~ 171 (196)
|+.++.+
T Consensus 90 ~a~~~~~ 96 (97)
T 2e5j_A 90 LARQQRD 96 (97)
T ss_dssp ECCCCCC
T ss_pred EcCCCCC
Confidence 9987654
No 130
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.78 E-value=2e-18 Score=126.21 Aligned_cols=81 Identities=20% Similarity=0.418 Sum_probs=74.9
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+.+++++|+.+|++||.|..|.|+.+ ++|||||+|.+.++|..|+..||+..|.|++|+|.
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 4456799999999999999999999999999999999876 38999999999999999999999999999999999
Q ss_pred EcccCC
Q 043064 165 WAFSNG 170 (196)
Q Consensus 165 ~a~~~~ 170 (196)
|+.++.
T Consensus 144 ~a~~~~ 149 (150)
T 2i2y_A 144 LSNGEK 149 (150)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 997764
No 131
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.78 E-value=1.8e-18 Score=138.50 Aligned_cols=123 Identities=21% Similarity=0.289 Sum_probs=100.8
Q ss_pred CCCcCcccccCCCcHHHHHHhhhhcccCCCCCCCCC-CCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCC
Q 043064 48 KKTKGRGFREEADSERHSRLADRNFESLGTDGGPGP-QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRR 126 (196)
Q Consensus 48 ~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~ 126 (196)
.+++|+|||.|.+. ..+..+...+++....+.+.. ......++|||+|||+.+++++|+.+|+.||.|..+.++.+..
T Consensus 54 ~~~~g~afV~f~~~-~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 132 (284)
T 3smz_A 54 DKYKGTAFVTLLNG-EQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSER 132 (284)
T ss_dssp ETTTTEEEEEESSH-HHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred ecCCCEEEEEeCCH-HHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCC
Confidence 36789999999954 444444445555444332221 1233567899999999999999999999999999999999988
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccCCC
Q 043064 127 TGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGP 171 (196)
Q Consensus 127 ~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~~~ 171 (196)
+|.++|||||+|.+.++|.+|+..|++..|.|+.|.|.|+.+...
T Consensus 133 ~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 133 TGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGC
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 999999999999999999999999999999999999999987653
No 132
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=1.5e-20 Score=131.83 Aligned_cols=87 Identities=25% Similarity=0.411 Sum_probs=80.8
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeE--------EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRN--------LHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELL 157 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~ 157 (196)
..+.++|||+|||+.+++++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|++|+..||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345788999999999999999999999999998 889988888999999999999999999999999999999
Q ss_pred CcEeEEEEcccCCCC
Q 043064 158 TQTLTVDWAFSNGPS 172 (196)
Q Consensus 158 g~~l~v~~a~~~~~~ 172 (196)
|+.|+|.|+.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999887653
No 133
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.78 E-value=1.4e-18 Score=122.28 Aligned_cols=84 Identities=18% Similarity=0.285 Sum_probs=77.1
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCC---eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEe
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGE---IRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTL 161 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l 161 (196)
.....++|||+|||+++|+++|+++|+.||. |..|.|+.++. |+++|||||+|.+.++|++||+ +|+..|+|+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 3456789999999999999999999999999 89999999875 9999999999999999999998 99999999999
Q ss_pred EEEEcccCC
Q 043064 162 TVDWAFSNG 170 (196)
Q Consensus 162 ~v~~a~~~~ 170 (196)
.|.++.++.
T Consensus 91 ~V~~a~~~~ 99 (118)
T 2db1_A 91 EVFKSHRTE 99 (118)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999986553
No 134
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.78 E-value=5.7e-19 Score=119.62 Aligned_cols=84 Identities=18% Similarity=0.432 Sum_probs=75.6
Q ss_pred CCCCCCEEEEcCCCccCcHHHHH----HhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQ----NVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQT 160 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~ 160 (196)
...++++|||+|||+.+++++|+ .+|++||.|..|.++. ++.++|||||+|.+.++|..|+..|||..|.|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 34567899999999999999999 9999999999998863 5677899999999999999999999999999999
Q ss_pred eEEEEcccCCC
Q 043064 161 LTVDWAFSNGP 171 (196)
Q Consensus 161 l~v~~a~~~~~ 171 (196)
|+|.|+.++..
T Consensus 81 l~v~~a~~~~~ 91 (97)
T 1nu4_A 81 MRIQYAKTDSD 91 (97)
T ss_dssp CEEEECSSCCT
T ss_pred EEEEEccCCCc
Confidence 99999987653
No 135
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=1e-18 Score=118.37 Aligned_cols=79 Identities=16% Similarity=0.336 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCc-cCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 86 SIEGWIILVTGVHE-EAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 86 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
..+.++|||+|||+ .+++++|+.+|++||.|..|.|. +|||||+|.+.++|+.|+..||+..+.|+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999998 99999999999999999999884 6899999999999999999999999999999999
Q ss_pred EcccCCCC
Q 043064 165 WAFSNGPS 172 (196)
Q Consensus 165 ~a~~~~~~ 172 (196)
|+.++...
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99876643
No 136
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=117.80 Aligned_cols=83 Identities=23% Similarity=0.375 Sum_probs=74.7
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+.+++++|+.+|++||.|..+ ..++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34467899999999999999999999999988766 2478889999999999999999999999999999999999
Q ss_pred EcccCCCC
Q 043064 165 WAFSNGPS 172 (196)
Q Consensus 165 ~a~~~~~~ 172 (196)
|+.++...
T Consensus 87 ~a~~~~~~ 94 (96)
T 1fjc_A 87 YTGEKGGT 94 (96)
T ss_dssp ECSSSCCC
T ss_pred EcCCCCCC
Confidence 99877654
No 137
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=117.07 Aligned_cols=79 Identities=25% Similarity=0.369 Sum_probs=70.2
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCC-eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC-ceeCCcEeEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGE-IRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNG-GELLTQTLTV 163 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~-~~l~g~~l~v 163 (196)
..+.++|||+|||+++++++|+.+|++||. |..+.+. ++|||||+|.+.++|++|+..||+ ..|.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 345688999999999999999999999999 6555553 378999999999999999999999 9999999999
Q ss_pred EEcccCCC
Q 043064 164 DWAFSNGP 171 (196)
Q Consensus 164 ~~a~~~~~ 171 (196)
.|+.++..
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 99987654
No 138
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.4e-19 Score=125.32 Aligned_cols=84 Identities=14% Similarity=0.206 Sum_probs=76.1
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
....++|||+|||+.+|+++|+.+|+.||.|..+.++.+..+|+++|||||+|.+.++|++||. ||+..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999999886666666799999999999999999999999 999999999999999
Q ss_pred cccCC
Q 043064 166 AFSNG 170 (196)
Q Consensus 166 a~~~~ 170 (196)
+.++.
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87643
No 139
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.77 E-value=1.1e-18 Score=121.39 Aligned_cols=80 Identities=20% Similarity=0.208 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEc
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYG-EIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a 166 (196)
..++|||+|||+.+++++|+++|++|| .|..+.+.. ..++|||||+|.+.++|++||+.|||..|.|+.|+|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 468999999999999999999999999 899998853 246899999999999999999999999999999999999
Q ss_pred ccCCC
Q 043064 167 FSNGP 171 (196)
Q Consensus 167 ~~~~~ 171 (196)
...++
T Consensus 103 ~~~p~ 107 (111)
T 2jvr_A 103 DNPPP 107 (111)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 75543
No 140
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=120.15 Aligned_cols=81 Identities=20% Similarity=0.201 Sum_probs=72.1
Q ss_pred CCCCCCEEEEcCCCcc-CcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC--CceeCCcEe
Q 043064 85 RSIEGWIILVTGVHEE-AQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMN--GGELLTQTL 161 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~--~~~l~g~~l 161 (196)
...++++|||+|||++ +++++|+.+|++||.|..|.|+.. +|||||+|.+.++|+.|+..|+ +..|.|++|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3556889999999998 999999999999999999998743 7999999999999999999886 456999999
Q ss_pred EEEEcccCCC
Q 043064 162 TVDWAFSNGP 171 (196)
Q Consensus 162 ~v~~a~~~~~ 171 (196)
+|.|+.++..
T Consensus 95 ~V~~a~~~~~ 104 (112)
T 1x4f_A 95 KVDLSEKYKK 104 (112)
T ss_dssp EEEEECSCSS
T ss_pred EEEECccccc
Confidence 9999977654
No 141
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.77 E-value=1.2e-18 Score=125.60 Aligned_cols=83 Identities=17% Similarity=0.263 Sum_probs=76.8
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCC---eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEe
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGE---IRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTL 161 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l 161 (196)
.....++|||+|||+++|+++|+++|++||. |..|.|+.++. |+++|||||+|.+.++|++||+ ||+..|+|+.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999999999999999999999 88999999975 9999999999999999999998 99999999999
Q ss_pred EEEEcccC
Q 043064 162 TVDWAFSN 169 (196)
Q Consensus 162 ~v~~a~~~ 169 (196)
.|.++.++
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99998654
No 142
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.77 E-value=3.6e-19 Score=129.19 Aligned_cols=86 Identities=29% Similarity=0.429 Sum_probs=74.2
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEE------EEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCc
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNL------HLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQ 159 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v------~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~ 159 (196)
..+.++|||+|||+.+|+++|+.+|++||.|..+ .+.. ..++.++|||||+|.+.++|.+||..|||..|.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 4457899999999999999999999999998764 1111 14788899999999999999999999999999999
Q ss_pred EeEEEEcccCCCC
Q 043064 160 TLTVDWAFSNGPS 172 (196)
Q Consensus 160 ~l~v~~a~~~~~~ 172 (196)
.|.|.||.+..++
T Consensus 121 ~l~V~~a~~~~~~ 133 (143)
T 3egn_A 121 PMVVQFARSARPK 133 (143)
T ss_dssp ECEEEECCCSCC-
T ss_pred EEEEEECCCCCCc
Confidence 9999999876544
No 143
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=4.7e-18 Score=114.63 Aligned_cols=80 Identities=16% Similarity=0.252 Sum_probs=70.7
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
....++|||+|||+.+++++|+.+|++||.|..| +.++.++. ||||+|.+.++|++||. ||+..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456799999999999999999999999999987 55555655 99999999999999999 999999999999998
Q ss_pred cccCCC
Q 043064 166 AFSNGP 171 (196)
Q Consensus 166 a~~~~~ 171 (196)
+.++..
T Consensus 79 a~~~~~ 84 (94)
T 2e5g_A 79 REQKEF 84 (94)
T ss_dssp SCCSCC
T ss_pred CCcCCC
Confidence 866554
No 144
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.76 E-value=3.2e-18 Score=118.59 Aligned_cols=79 Identities=24% Similarity=0.476 Sum_probs=72.7
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+.+++++|+.+|++||.|..|.++ +|||||+|.+.++|++|+..|||..|.|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 45567999999999999999999999999999999987 6899999999999999999999999999999999
Q ss_pred EcccCCC
Q 043064 165 WAFSNGP 171 (196)
Q Consensus 165 ~a~~~~~ 171 (196)
|+.+...
T Consensus 99 ~a~~~~~ 105 (108)
T 2jvo_A 99 YSKLPAK 105 (108)
T ss_dssp SCSCCC-
T ss_pred EecCCCC
Confidence 9987664
No 145
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.76 E-value=8.4e-18 Score=116.59 Aligned_cols=77 Identities=26% Similarity=0.467 Sum_probs=70.7
Q ss_pred CCCCEEEEcCCCcc-CcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 87 IEGWIILVTGVHEE-AQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 87 ~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
...++|||+|||+. +++++|+.+|++||.|..|.| .+|||||+|.+.++|+.|+..||+..|.|+.|+|.|
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34589999999999 999999999999999999988 378999999999999999999999999999999999
Q ss_pred cccCCC
Q 043064 166 AFSNGP 171 (196)
Q Consensus 166 a~~~~~ 171 (196)
+.+...
T Consensus 97 a~~~~~ 102 (110)
T 1wf1_A 97 AGEPKP 102 (110)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 975443
No 146
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.6e-18 Score=118.37 Aligned_cols=77 Identities=22% Similarity=0.314 Sum_probs=71.3
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEc
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a 166 (196)
...++|||+|||..+++++|+.+|++||.|..|.+.. .+|||||+|.+.++|.+|+..||+..|.|+.|+|.|+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 3468999999999999999999999999999999873 3799999999999999999999999999999999999
Q ss_pred ccC
Q 043064 167 FSN 169 (196)
Q Consensus 167 ~~~ 169 (196)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 147
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=6.1e-18 Score=114.88 Aligned_cols=78 Identities=18% Similarity=0.346 Sum_probs=71.5
Q ss_pred CCCCCCEEEEcCCCc-cCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEE
Q 043064 85 RSIEGWIILVTGVHE-EAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v 163 (196)
...+.++|||+|||+ .+++++|+.+|++||.|..|.+. +|||||+|.+.++|.+|+..||+..|.|+.|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345678999999998 99999999999999999999883 789999999999999999999999999999999
Q ss_pred EEcccCC
Q 043064 164 DWAFSNG 170 (196)
Q Consensus 164 ~~a~~~~ 170 (196)
.|++++.
T Consensus 90 ~~a~~~~ 96 (97)
T 2xnq_A 90 EVSSSNA 96 (97)
T ss_dssp EECCCCC
T ss_pred EecCCCC
Confidence 9997654
No 148
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-17 Score=112.64 Aligned_cols=81 Identities=23% Similarity=0.387 Sum_probs=72.6
Q ss_pred CCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEE
Q 043064 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163 (196)
Q Consensus 84 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v 163 (196)
....+.++|||+|| .+++++|+.+|++||.|..|.|. .++|||||+|.+.++|++||..||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34456789999996 89999999999999999999885 34789999999999999999999999999999999
Q ss_pred EEcccCCCC
Q 043064 164 DWAFSNGPS 172 (196)
Q Consensus 164 ~~a~~~~~~ 172 (196)
.|+.++...
T Consensus 82 ~~a~~~~~~ 90 (97)
T 1x5p_A 82 NIARKQPML 90 (97)
T ss_dssp ECCSSCCCC
T ss_pred EECCCCCCC
Confidence 999887654
No 149
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.76 E-value=9.8e-19 Score=114.80 Aligned_cols=73 Identities=27% Similarity=0.466 Sum_probs=67.9
Q ss_pred CCEEEEcCCCccC------cHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCc-Ee
Q 043064 89 GWIILVTGVHEEA------QEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQ-TL 161 (196)
Q Consensus 89 ~~~l~V~nLp~~~------te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~-~l 161 (196)
+++|||+|||..+ ++++|+.+|++||.|..|.|+ +.+|+++|||||+|.+.++|++|+..|||..|.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 789999999999999999987 35889999999999999999999999999999999 88
Q ss_pred EE
Q 043064 162 TV 163 (196)
Q Consensus 162 ~v 163 (196)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 150
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.76 E-value=6.5e-18 Score=130.26 Aligned_cols=85 Identities=21% Similarity=0.293 Sum_probs=78.3
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
..+.++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|.+||..+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 043064 166 AFSNG 170 (196)
Q Consensus 166 a~~~~ 170 (196)
+....
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 86543
No 151
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.76 E-value=4.4e-18 Score=118.83 Aligned_cols=81 Identities=22% Similarity=0.406 Sum_probs=74.4
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEc
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a 166 (196)
.++++|||+|||+.+++++|+.+|++||.|..|.|+.+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45689999999999999999999999999999999854 445899999999999999999999999999999999999
Q ss_pred ccCC
Q 043064 167 FSNG 170 (196)
Q Consensus 167 ~~~~ 170 (196)
.+..
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 8654
No 152
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.76 E-value=5.3e-19 Score=114.17 Aligned_cols=75 Identities=20% Similarity=0.441 Sum_probs=71.3
Q ss_pred EEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEc
Q 043064 91 IILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166 (196)
Q Consensus 91 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a 166 (196)
+|||+|||+.+++++|+.+|++||.|..|.++.++.++.++|||||+|.+.++|++|+. +++..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999998889999999999999999999997 4889999999999886
No 153
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.76 E-value=3.9e-19 Score=128.53 Aligned_cols=84 Identities=24% Similarity=0.370 Sum_probs=75.1
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
....++|||+|||+++|+++|+++|++|| |..|.|+.++. ++++|||||+|.+.++|++|| .+|+..|+|+.|.|.+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999 77999999974 999999999999999999999 7899999999999999
Q ss_pred cccCCCC
Q 043064 166 AFSNGPS 172 (196)
Q Consensus 166 a~~~~~~ 172 (196)
+.+....
T Consensus 120 a~~~~~~ 126 (139)
T 2hgn_A 120 NSTTGAS 126 (139)
T ss_dssp CCCSCC-
T ss_pred CCCCCCC
Confidence 9776543
No 154
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.75 E-value=1e-18 Score=120.84 Aligned_cols=84 Identities=21% Similarity=0.243 Sum_probs=77.1
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCC---eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEe
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGE---IRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTL 161 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l 161 (196)
.....++|||+|||+.+|+++|+++|+.||. |..|.|+.++. |+++|||||+|.+.++|++||. +|+..|+|+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3456789999999999999999999999988 89999999875 9999999999999999999998 99999999999
Q ss_pred EEEEcccCC
Q 043064 162 TVDWAFSNG 170 (196)
Q Consensus 162 ~v~~a~~~~ 170 (196)
.|.++.++.
T Consensus 85 ~V~~a~~~~ 93 (107)
T 2lmi_A 85 EVYEINNED 93 (107)
T ss_dssp CCEECCHHH
T ss_pred EEEECCHHH
Confidence 999987643
No 155
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.75 E-value=3.8e-18 Score=128.23 Aligned_cols=85 Identities=22% Similarity=0.359 Sum_probs=79.5
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34557899999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred EcccCC
Q 043064 165 WAFSNG 170 (196)
Q Consensus 165 ~a~~~~ 170 (196)
||.+..
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 997654
No 156
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.75 E-value=1.5e-18 Score=118.64 Aligned_cols=83 Identities=22% Similarity=0.418 Sum_probs=76.9
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
....++|||+|||+.+++++|+.+|++||.|..|.|+.++ ++.++|||||+|.+.++|++|+. ++..|+|+.|.|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3456889999999999999999999999999999999997 99999999999999999999997 99999999999999
Q ss_pred cccCCC
Q 043064 166 AFSNGP 171 (196)
Q Consensus 166 a~~~~~ 171 (196)
+.++..
T Consensus 83 a~~~~~ 88 (102)
T 2xs2_A 83 AIRKQN 88 (102)
T ss_dssp EEECC-
T ss_pred CCcCcc
Confidence 987654
No 157
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=5.4e-18 Score=117.97 Aligned_cols=78 Identities=18% Similarity=0.236 Sum_probs=71.8
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
..++|||+|||+.+++++|+.+|++||.|..|.|+. .+|||||+|.+.++|+.|+..||+..|.|+.|.|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467899999999999999999999999999998874 37899999999999999999999999999999999997
Q ss_pred cCCC
Q 043064 168 SNGP 171 (196)
Q Consensus 168 ~~~~ 171 (196)
....
T Consensus 83 ~~~~ 86 (111)
T 1whx_A 83 IGVF 86 (111)
T ss_dssp TTTT
T ss_pred CCcc
Confidence 6543
No 158
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.3e-18 Score=117.66 Aligned_cols=79 Identities=20% Similarity=0.301 Sum_probs=73.2
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
..++|||+|||+.+|+++|+++|+.| .|..|.|+.++ .|+++|||||+|.+.++|++|| .+|+..|+|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 45789999999999999999999999 89999999986 5999999999999999999999 699999999999998886
Q ss_pred cC
Q 043064 168 SN 169 (196)
Q Consensus 168 ~~ 169 (196)
++
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 53
No 159
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.75 E-value=1.3e-17 Score=122.64 Aligned_cols=83 Identities=28% Similarity=0.485 Sum_probs=78.8
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
+.++|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|++..+.|+.|.|.|+.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 35789999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred cCC
Q 043064 168 SNG 170 (196)
Q Consensus 168 ~~~ 170 (196)
+..
T Consensus 81 ~~~ 83 (167)
T 1fxl_A 81 PSS 83 (167)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 160
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.75 E-value=1.1e-17 Score=133.82 Aligned_cols=75 Identities=23% Similarity=0.383 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-CcEeEEEEc
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELL-TQTLTVDWA 166 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~-g~~l~v~~a 166 (196)
+.++|||+|||..+++++|+++|++||.|..|.|+.++ +|||||+|.+.++|.+|+..|||..|. |+.|+|.|+
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 46889999999999999999999999999999998654 689999999999999999999999999 999999998
Q ss_pred c
Q 043064 167 F 167 (196)
Q Consensus 167 ~ 167 (196)
+
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 5
No 161
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=7.2e-18 Score=113.96 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEE-EEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNL-HLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v-~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
....++|||+|||+.+++++|+.+|++||.|..| .|+.++.++ .|||+|.+.++|..|+..||+..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456889999999999999999999999999999 577765443 39999999999999999999999999999999
Q ss_pred EcccCC
Q 043064 165 WAFSNG 170 (196)
Q Consensus 165 ~a~~~~ 170 (196)
|+.++.
T Consensus 88 ~a~~~~ 93 (96)
T 2e44_A 88 YIPDEM 93 (96)
T ss_dssp ECCCCC
T ss_pred EcCccc
Confidence 998773
No 162
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.74 E-value=1.1e-17 Score=123.34 Aligned_cols=84 Identities=24% Similarity=0.436 Sum_probs=79.4
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
+.++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|+..|++..+.|+.|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46889999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred cCCC
Q 043064 168 SNGP 171 (196)
Q Consensus 168 ~~~~ 171 (196)
+...
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 6653
No 163
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.73 E-value=1.4e-17 Score=132.23 Aligned_cols=121 Identities=16% Similarity=0.251 Sum_probs=96.0
Q ss_pred CCcCcccccCCCcHHHHHHhhhhcccCCCCCCCCC-CCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCC
Q 043064 49 KTKGRGFREEADSERHSRLADRNFESLGTDGGPGP-QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRT 127 (196)
Q Consensus 49 ~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~ 127 (196)
+++|||||.|.+ ...+..+...+++....+.... ....+..+|||+|||..+|+++|+++|+.||.|..|.|+.+ .+
T Consensus 56 ~~kg~afV~f~~-~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~ 133 (261)
T 3sde_A 56 RDRGFGFIRLES-RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DR 133 (261)
T ss_dssp TTTTEEEEECSS-HHHHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TT
T ss_pred CCCcEEEEEECC-HHHHHHHHHHcCCcEECCceeEeeecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CC
Confidence 468999999995 4444444445555444432221 12345789999999999999999999999999999999999 58
Q ss_pred CCcceEEEEEecCHHHHHHHHHHhCC-ceeC---CcEeEEEEcccCCC
Q 043064 128 GFVKGYALIEYENFEEAQNAITAMNG-GELL---TQTLTVDWAFSNGP 171 (196)
Q Consensus 128 g~~~g~afv~f~~~~~a~~al~~l~~-~~l~---g~~l~v~~a~~~~~ 171 (196)
|.++|||||+|.+.++|.+|+..||+ ..+. +++|.|.++.+...
T Consensus 134 g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 134 GRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEES
T ss_pred CCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccCc
Confidence 99999999999999999999999954 4444 99999999987643
No 164
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.73 E-value=6.9e-18 Score=135.60 Aligned_cols=119 Identities=12% Similarity=0.032 Sum_probs=92.4
Q ss_pred CcCcccccCCCcHHHHHHhhhhcccCCCCCCCCCCCCCCCCEEEEcCCCccCcHHHHHHhhccCC-CeeEEEEeecCCCC
Q 043064 50 TKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYG-EIRNLHLNLDRRTG 128 (196)
Q Consensus 50 ~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g 128 (196)
++|+|||.|.+.+.+.. +. .++.....+.+........++|||+|||+.+++++|+.+|+.|| .|..|.++.++ .+
T Consensus 80 ~~g~afV~f~~~~~A~~-A~-~~~~~~~~g~~i~v~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~ 156 (292)
T 2ghp_A 80 NFRFARIEFARYDGALA-AI-TKTHKVVGQNEIIVSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FN 156 (292)
T ss_dssp SSEEEEEEESSHHHHHH-HH-TTTTCEETTEECEEEECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC------
T ss_pred CcEEEEEEECCHHHHHH-HH-HhCCcEeCCcEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CC
Confidence 57999999995555444 33 24554444444333445688999999999999999999999999 99999998875 47
Q ss_pred CcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccCCC
Q 043064 129 FVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGP 171 (196)
Q Consensus 129 ~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~~~ 171 (196)
.++|||||+|.+.++|..|+..|++..|.|+.|.|.|+.+...
T Consensus 157 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 157 TSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp --CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC--
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcc
Confidence 8899999999999999999999999999999999999987654
No 165
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.73 E-value=2e-17 Score=110.16 Aligned_cols=76 Identities=20% Similarity=0.265 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
..++|||+|||+.+++++|+++|++| .|..+.+. +++|||||+|.+.++|++|+..||+..+.|+.|+|.|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46789999999999999999999999 99999885 458999999999999999999999999999999999996
Q ss_pred cCC
Q 043064 168 SNG 170 (196)
Q Consensus 168 ~~~ 170 (196)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 554
No 166
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=115.39 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=71.2
Q ss_pred CCCCCEEEE--cCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee-----CC
Q 043064 86 SIEGWIILV--TGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGEL-----LT 158 (196)
Q Consensus 86 ~~~~~~l~V--~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l-----~g 158 (196)
..+.++||| +||++.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|++.|||..| .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 445788999 779999999999999999999999987642 78999999999999999999999988 68
Q ss_pred cEeEEEEcccCCC
Q 043064 159 QTLTVDWAFSNGP 171 (196)
Q Consensus 159 ~~l~v~~a~~~~~ 171 (196)
++|.|.|+...+-
T Consensus 96 ~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 96 ITLYLNFVEKVQW 108 (114)
T ss_dssp EECEEEEESCCCC
T ss_pred cEEEEEecccCcc
Confidence 9999999976543
No 167
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.1e-17 Score=117.79 Aligned_cols=77 Identities=22% Similarity=0.291 Sum_probs=70.4
Q ss_pred CEEEEcCC----CccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecC----HHH----HHHHHH--HhCCce
Q 043064 90 WIILVTGV----HEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN----FEE----AQNAIT--AMNGGE 155 (196)
Q Consensus 90 ~~l~V~nL----p~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~----~~~----a~~al~--~l~~~~ 155 (196)
+.|||+|| |+.+++.+|+.+|+.||+|.+|.++.|+.||.++|||||+|.+ ... |.+|+. .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999995 322 888988 789999
Q ss_pred eCCcEeEEEEc
Q 043064 156 LLTQTLTVDWA 166 (196)
Q Consensus 156 l~g~~l~v~~a 166 (196)
|+|+.|+|.+-
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999975
No 168
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=110.00 Aligned_cols=76 Identities=16% Similarity=0.268 Sum_probs=67.3
Q ss_pred CCCCE-EEEcCCCccCcHHH----HHHhhccC-CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcE
Q 043064 87 IEGWI-ILVTGVHEEAQEDD----LQNVFGEY-GEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQT 160 (196)
Q Consensus 87 ~~~~~-l~V~nLp~~~te~~----L~~~F~~~-G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~ 160 (196)
.++.+ |||+|||+.+++++ |..+|++| |+|.+| ++ |+|||.|.+.++|++|++.|||..|.|++
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34566 99999999999987 55899999 599887 33 89999999999999999999999999999
Q ss_pred eEEEEcccCCCC
Q 043064 161 LTVDWAFSNGPS 172 (196)
Q Consensus 161 l~v~~a~~~~~~ 172 (196)
|+|.||+.++.-
T Consensus 76 i~v~~A~~~sd~ 87 (96)
T 2diu_A 76 IIVSFTPKNREL 87 (96)
T ss_dssp CEEESSCCSCCC
T ss_pred EEEEecCCCcce
Confidence 999999887653
No 169
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=125.73 Aligned_cols=77 Identities=21% Similarity=0.351 Sum_probs=71.3
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-CcEeEEEE
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYG-EIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELL-TQTLTVDW 165 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~-g~~l~v~~ 165 (196)
+.++|||+|||..+++++|+++|++|| .|..|.++.+. +|+|||+|.+.++|.+|+..|||..|+ |+.|+|.|
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 478999999999999999999999999 99999986542 789999999999999999999999999 99999999
Q ss_pred cccC
Q 043064 166 AFSN 169 (196)
Q Consensus 166 a~~~ 169 (196)
+++.
T Consensus 194 a~~~ 197 (198)
T 1qm9_A 194 SKST 197 (198)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9764
No 170
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.72 E-value=5.2e-17 Score=115.59 Aligned_cols=80 Identities=20% Similarity=0.323 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceE-EEEEecCHHHHHHHHHHhCCceeCC--cEeEE
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGY-ALIEYENFEEAQNAITAMNGGELLT--QTLTV 163 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~-afv~f~~~~~a~~al~~l~~~~l~g--~~l~v 163 (196)
.....|||+||+..+|+++|..+|++||.|.+|.|.... +|| |||+|.+.++|+.|++.|||..|.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 345678899999999999999999999999999887542 677 9999999999999999999999988 89999
Q ss_pred EEcccCCC
Q 043064 164 DWAFSNGP 171 (196)
Q Consensus 164 ~~a~~~~~ 171 (196)
.|+++..-
T Consensus 101 ~~ak~~~l 108 (130)
T 3zzy_A 101 DFSKLTSL 108 (130)
T ss_dssp EECSCSSC
T ss_pred EecCCCce
Confidence 99987643
No 171
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.72 E-value=1.3e-17 Score=128.09 Aligned_cols=78 Identities=13% Similarity=0.203 Sum_probs=69.1
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCe--eEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCc----Ee
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEI--RNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQ----TL 161 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i--~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~----~l 161 (196)
++++|||+|||+.+|+++|+++|++||.| ..+.++.+. +..+|+|||+|.+.++|.+||..|||..|.|. ++
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 46789999999999999999999999999 888887664 55579999999999999999999999999876 67
Q ss_pred EEEEcc
Q 043064 162 TVDWAF 167 (196)
Q Consensus 162 ~v~~a~ 167 (196)
.|.|++
T Consensus 200 ~vk~~f 205 (205)
T 3tyt_A 200 TLKLCF 205 (205)
T ss_dssp ECEEEC
T ss_pred EEEecC
Confidence 777763
No 172
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.72 E-value=3.6e-17 Score=127.40 Aligned_cols=77 Identities=21% Similarity=0.339 Sum_probs=70.9
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-CcEeEEEE
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYG-EIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELL-TQTLTVDW 165 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~-g~~l~v~~ 165 (196)
+.++|||+|||+.+++++|+++|++|| .|..|.++.. .+|||||+|.+.++|.+|+..|||..|. |+.|+|.|
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 368999999999999999999999999 9999998643 2689999999999999999999999999 99999999
Q ss_pred cccC
Q 043064 166 AFSN 169 (196)
Q Consensus 166 a~~~ 169 (196)
+++.
T Consensus 225 a~~~ 228 (229)
T 2adc_A 225 SKST 228 (229)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 9764
No 173
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=118.22 Aligned_cols=81 Identities=19% Similarity=0.175 Sum_probs=73.3
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCCe----eEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeE
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEI----RNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLT 162 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i----~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~ 162 (196)
...++|||+|||+++|+++|+++|++||.| ..|.|+.+ .+|+++|||||+|.+.++|++||+. |+..|+|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 346789999999999999999999999875 68999988 4899999999999999999999985 99999999999
Q ss_pred EEEcccC
Q 043064 163 VDWAFSN 169 (196)
Q Consensus 163 v~~a~~~ 169 (196)
|..+.++
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9987544
No 174
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.71 E-value=1.2e-17 Score=118.66 Aligned_cols=82 Identities=17% Similarity=0.261 Sum_probs=73.4
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCee--EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIR--NLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLT 162 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~ 162 (196)
.....++|||+|||+.+|+++|+++|++| .|. .|.|+.++. |+++|||||+|.+.++|++||+ +++..|+|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 34457889999999999999999999999 677 899999875 9999999999999999999997 477999999999
Q ss_pred EEEcccC
Q 043064 163 VDWAFSN 169 (196)
Q Consensus 163 v~~a~~~ 169 (196)
|.++.++
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988543
No 175
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.71 E-value=7.7e-17 Score=118.89 Aligned_cols=81 Identities=20% Similarity=0.264 Sum_probs=72.0
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--cEeEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLT--QTLTV 163 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g--~~l~v 163 (196)
.....+|||+||++.+|+++|+++|++||.|.+|.|... ..+|||||+|.+.++|+.|++.|||..|.| +.|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 344577999999999999999999999999999998643 247899999999999999999999999965 99999
Q ss_pred EEcccCC
Q 043064 164 DWAFSNG 170 (196)
Q Consensus 164 ~~a~~~~ 170 (196)
.|++++.
T Consensus 119 ~~Ak~~~ 125 (164)
T 1sjr_A 119 DFSKLTS 125 (164)
T ss_dssp EECSSSS
T ss_pred EEecCCc
Confidence 9998864
No 176
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.71 E-value=5.6e-17 Score=122.61 Aligned_cols=87 Identities=17% Similarity=0.309 Sum_probs=78.3
Q ss_pred CCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEE
Q 043064 84 QRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163 (196)
Q Consensus 84 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v 163 (196)
....+.++|||+|||+++|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||.. ++..|.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 3445678999999999999999999999999999999999988999999999999999999999975 899999999999
Q ss_pred EEcccCCC
Q 043064 164 DWAFSNGP 171 (196)
Q Consensus 164 ~~a~~~~~ 171 (196)
.++.+...
T Consensus 87 ~~~~~~~~ 94 (196)
T 1l3k_A 87 KRAVSRED 94 (196)
T ss_dssp EECCC---
T ss_pred ecccCccc
Confidence 99876543
No 177
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=1.7e-16 Score=112.23 Aligned_cols=77 Identities=23% Similarity=0.337 Sum_probs=68.5
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceE-EEEEecCHHHHHHHHHHhCCceeCC--cEeEEEE
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGY-ALIEYENFEEAQNAITAMNGGELLT--QTLTVDW 165 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~-afv~f~~~~~a~~al~~l~~~~l~g--~~l~v~~ 165 (196)
...|||+||++.+++++|..+|++||.|..|.|.. + .|| |||+|.+.++|..|++.|||..|.| +.|+|.|
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 34578999999999999999999999999998864 2 376 9999999999999999999999987 6999999
Q ss_pred cccCCC
Q 043064 166 AFSNGP 171 (196)
Q Consensus 166 a~~~~~ 171 (196)
|+++.-
T Consensus 99 Ak~~~l 104 (124)
T 2e5i_A 99 ARPTRL 104 (124)
T ss_dssp CSCSCC
T ss_pred ecCCcc
Confidence 987753
No 178
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.70 E-value=9.6e-17 Score=107.26 Aligned_cols=77 Identities=18% Similarity=0.365 Sum_probs=62.8
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCce--eCCcEeEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGE--LLTQTLTV 163 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~--l~g~~l~v 163 (196)
..+.++|||+|||+++|+++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|++ +++.. +.|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 446789999999999999999999999999999999864 58999999999999984 45554 56999999
Q ss_pred EEcccCCC
Q 043064 164 DWAFSNGP 171 (196)
Q Consensus 164 ~~a~~~~~ 171 (196)
.+|.++..
T Consensus 79 ~~a~~k~~ 86 (89)
T 3d2w_A 79 SNAEPKHN 86 (89)
T ss_dssp EECC----
T ss_pred EEcCCCCc
Confidence 99987653
No 179
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.4e-16 Score=116.95 Aligned_cols=81 Identities=25% Similarity=0.496 Sum_probs=75.0
Q ss_pred CEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcccC
Q 043064 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSN 169 (196)
Q Consensus 90 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~~ 169 (196)
++|||+|||+.+|+++|+++|++||.|..|.++.++ +++++|||||+|.+.++|..|+..|++..+.|+.|.|.|+.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 479999999999999999999999999999999885 6778999999999999999999999999999999999999766
Q ss_pred CC
Q 043064 170 GP 171 (196)
Q Consensus 170 ~~ 171 (196)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 180
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.69 E-value=1e-16 Score=123.13 Aligned_cols=77 Identities=22% Similarity=0.342 Sum_probs=71.7
Q ss_pred CCCEEEEcCCC-ccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEc
Q 043064 88 EGWIILVTGVH-EEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166 (196)
Q Consensus 88 ~~~~l~V~nLp-~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a 166 (196)
++++|||+||| +.+++++|+.+|++||.|.+|.|+.++ +|||||+|.+.++|+.||+.|||..|.|+.|+|.|+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46899999999 799999999999999999999998653 799999999999999999999999999999999999
Q ss_pred ccC
Q 043064 167 FSN 169 (196)
Q Consensus 167 ~~~ 169 (196)
+..
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 754
No 181
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=5.6e-17 Score=113.21 Aligned_cols=79 Identities=19% Similarity=0.211 Sum_probs=67.6
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCC---CCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRT---GFVKGYALIEYENFEEAQNAITAMNGGELLTQTLT 162 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~---g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~ 162 (196)
....++|||+|||+.+++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|++||+.|+ .++|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34568899999999999999999999999999 888877666 7999999999999999999999883 36677666
Q ss_pred EEEcc
Q 043064 163 VDWAF 167 (196)
Q Consensus 163 v~~a~ 167 (196)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 65443
No 182
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.6e-17 Score=108.33 Aligned_cols=79 Identities=15% Similarity=0.254 Sum_probs=67.0
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEc
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a 166 (196)
.+.++|||+|||+.+++++|+.+|++||.|..|.|+.+ ++|||||+|.+.++|++++. ....+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 45689999999999999999999999999999998764 48999999999999986532 134568999999999
Q ss_pred ccCCCC
Q 043064 167 FSNGPS 172 (196)
Q Consensus 167 ~~~~~~ 172 (196)
.++...
T Consensus 76 ~~~~~~ 81 (88)
T 1wf0_A 76 EPKHNS 81 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876643
No 183
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.68 E-value=1.6e-16 Score=121.86 Aligned_cols=83 Identities=29% Similarity=0.354 Sum_probs=74.8
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
+.++|||+|||+++|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 35789999999999999999999999999999999988899999999999999999999999999999999999998876
Q ss_pred cCC
Q 043064 168 SNG 170 (196)
Q Consensus 168 ~~~ 170 (196)
...
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 543
No 184
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.67 E-value=2e-16 Score=111.64 Aligned_cols=79 Identities=24% Similarity=0.393 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDW 165 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~ 165 (196)
..+.++|||+|| ++++++|+.+|++||.|..|.|. .++|||||+|.+.++|++|+..||+..|.|+.|+|.|
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346789999996 69999999999999999999886 3479999999999999999999999999999999999
Q ss_pred cccCCCC
Q 043064 166 AFSNGPS 172 (196)
Q Consensus 166 a~~~~~~ 172 (196)
+.++...
T Consensus 108 a~~~~~~ 114 (121)
T 2bz2_A 108 ARKQPML 114 (121)
T ss_dssp CCSSCC-
T ss_pred eCCCCCC
Confidence 9877543
No 185
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.67 E-value=5.3e-16 Score=106.83 Aligned_cols=83 Identities=14% Similarity=0.136 Sum_probs=73.2
Q ss_pred CCCCCEEEEcCCCc-----cCcHHHHHHhhccCCCeeEEEEeecCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCc
Q 043064 86 SIEGWIILVTGVHE-----EAQEDDLQNVFGEYGEIRNLHLNLDRRT-GFVKGYALIEYENFEEAQNAITAMNGGELLTQ 159 (196)
Q Consensus 86 ~~~~~~l~V~nLp~-----~~te~~L~~~F~~~G~i~~v~i~~~~~~-g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~ 159 (196)
..++++|+|.||.. +-++++|+++|++||.|.+|.|+.++.+ +.++||+||+|.+.++|.+|+..|||..+.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34678999999963 2368999999999999999999987644 67899999999999999999999999999999
Q ss_pred EeEEEEccc
Q 043064 160 TLTVDWAFS 168 (196)
Q Consensus 160 ~l~v~~a~~ 168 (196)
.|.|.|+.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999965
No 186
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.67 E-value=1.8e-16 Score=104.99 Aligned_cols=72 Identities=21% Similarity=0.382 Sum_probs=66.7
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccC----C-------CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCce
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEY----G-------EIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGE 155 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~ 155 (196)
.+.++|||+|||+.+++++|+++|++| | .|..+.+..+ +|||||+|.+.++|++|+ .||+..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 356889999999999999999999999 8 8999988755 799999999999999999 999999
Q ss_pred eCCcEeEEEE
Q 043064 156 LLTQTLTVDW 165 (196)
Q Consensus 156 l~g~~l~v~~ 165 (196)
|.|+.|+|..
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 187
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.65 E-value=6.5e-16 Score=114.47 Aligned_cols=84 Identities=21% Similarity=0.323 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCC--CcceEEEEEecCHHHHHHHHHHhCCceeC---CcEeE
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTG--FVKGYALIEYENFEEAQNAITAMNGGELL---TQTLT 162 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g--~~~g~afv~f~~~~~a~~al~~l~~~~l~---g~~l~ 162 (196)
+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.++ .++|||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46789999999999999999999999999999999998776 89999999999999999999999998865 67888
Q ss_pred EEEcccCCC
Q 043064 163 VDWAFSNGP 171 (196)
Q Consensus 163 v~~a~~~~~ 171 (196)
+.++.+...
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 888876543
No 188
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.65 E-value=3.9e-16 Score=122.09 Aligned_cols=81 Identities=21% Similarity=0.313 Sum_probs=71.3
Q ss_pred CCCCCEEEEcCCCccC---------cHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q 043064 86 SIEGWIILVTGVHEEA---------QEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGEL 156 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~---------te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l 156 (196)
....++|||+||+..+ ++++|+.+|++||.|..|.|+.+ +|||||+|.+.++|+.|++.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567899999999998 79999999999999999999854 79999999999999999999999999
Q ss_pred ------------CCcEeEEEEcccCCCC
Q 043064 157 ------------LTQTLTVDWAFSNGPS 172 (196)
Q Consensus 157 ------------~g~~l~v~~a~~~~~~ 172 (196)
.|+.|.|.||...+..
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred eccccccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876643
No 189
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.65 E-value=3.2e-16 Score=115.46 Aligned_cols=80 Identities=21% Similarity=0.452 Sum_probs=73.9
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEcc
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAF 167 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~ 167 (196)
+.++|||+|||+.+|+++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|+. ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46789999999999999999999999999999999998899999999999999999999998 4678999999999886
Q ss_pred cC
Q 043064 168 SN 169 (196)
Q Consensus 168 ~~ 169 (196)
+.
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 53
No 190
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.65 E-value=1e-15 Score=122.33 Aligned_cols=83 Identities=18% Similarity=0.445 Sum_probs=76.0
Q ss_pred CCCCCCEEEEcCCCccCcHHHHH----HhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQ----NVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQT 160 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~ 160 (196)
...+.++|||+|||+.+++++|+ .+|++||.|..|.++. +++++|||||+|.+.++|.+||..||+..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 44568899999999999999976 8999999999998874 7788999999999999999999999999999999
Q ss_pred eEEEEcccCC
Q 043064 161 LTVDWAFSNG 170 (196)
Q Consensus 161 l~v~~a~~~~ 170 (196)
|+|.|+.+..
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999997655
No 191
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.63 E-value=1.6e-15 Score=115.44 Aligned_cols=79 Identities=15% Similarity=0.291 Sum_probs=72.3
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEccc
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFS 168 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a~~ 168 (196)
.++|||+|||+.+|+++|+.+|++||.|..|.|+.+. ++.++|||||+|.+.++|++|+..+ +..|+|+.|.|.|+..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 5789999999999999999999999999999999885 6889999999999999999999765 5699999999998764
Q ss_pred C
Q 043064 169 N 169 (196)
Q Consensus 169 ~ 169 (196)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 192
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.7e-15 Score=101.48 Aligned_cols=83 Identities=22% Similarity=0.341 Sum_probs=70.8
Q ss_pred CCCCCCEEEEcCCCccC-----------cHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 043064 85 RSIEGWIILVTGVHEEA-----------QEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNG 153 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~-----------te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~ 153 (196)
...++++|+|.||.... ++++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|+..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 44568899999994433 25899999999999999965 443 2689999999999999999999999
Q ss_pred ceeCCcEeEEEEcccCCC
Q 043064 154 GELLTQTLTVDWAFSNGP 171 (196)
Q Consensus 154 ~~l~g~~l~v~~a~~~~~ 171 (196)
..|.|+.|+|.|+.++..
T Consensus 87 ~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp CEETTEECEEEECCSCCC
T ss_pred CEECCcEEEEEEeCCCCC
Confidence 999999999999987654
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.62 E-value=1.3e-15 Score=118.52 Aligned_cols=81 Identities=20% Similarity=0.397 Sum_probs=74.7
Q ss_pred CCCCCCEEEEcCCCc-cCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEE
Q 043064 85 RSIEGWIILVTGVHE-EAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v 163 (196)
...+.++|||+|||+ .+++++|+++|++||.|..|.|+.++ +|||||+|.+.++|++|+..|++..|.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345678999999999 99999999999999999999998775 789999999999999999999999999999999
Q ss_pred EEcccCC
Q 043064 164 DWAFSNG 170 (196)
Q Consensus 164 ~~a~~~~ 170 (196)
.|+.+..
T Consensus 105 ~~a~~~~ 111 (229)
T 2adc_A 105 TLSKHQN 111 (229)
T ss_dssp ECCSCCC
T ss_pred EEecCcc
Confidence 9998653
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.60 E-value=1.5e-15 Score=115.17 Aligned_cols=78 Identities=21% Similarity=0.416 Sum_probs=72.8
Q ss_pred CCCEEEEcCCCc-cCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEEEc
Q 043064 88 EGWIILVTGVHE-EAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWA 166 (196)
Q Consensus 88 ~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~~a 166 (196)
.+++|||+|||+ .+++++|+++|++||.|..|.++.++ +|||||+|.+.++|.+|+..||+..|.|+.|.|.|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468899999999 99999999999999999999998765 789999999999999999999999999999999999
Q ss_pred ccCC
Q 043064 167 FSNG 170 (196)
Q Consensus 167 ~~~~ 170 (196)
.+..
T Consensus 77 ~~~~ 80 (198)
T 1qm9_A 77 KHQN 80 (198)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8653
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.59 E-value=6.7e-15 Score=116.71 Aligned_cols=80 Identities=23% Similarity=0.420 Sum_probs=72.9
Q ss_pred CCCCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeE
Q 043064 83 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLT 162 (196)
Q Consensus 83 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~ 162 (196)
.....+.++|||+|||+++|+++|+.+|+.||.|..|.|..+ +|||||+|.+.++|..|+..|++..|.|+.|.
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 89 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLR 89 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeE
Confidence 334456789999999999999999999999999999998654 78999999999999999999999999999999
Q ss_pred EEEccc
Q 043064 163 VDWAFS 168 (196)
Q Consensus 163 v~~a~~ 168 (196)
|.|+.+
T Consensus 90 v~~a~~ 95 (261)
T 3sde_A 90 IRFATH 95 (261)
T ss_dssp EEECCC
T ss_pred eeeccc
Confidence 999865
No 196
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.57 E-value=8.5e-16 Score=114.23 Aligned_cols=85 Identities=14% Similarity=0.297 Sum_probs=73.1
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 85 RSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 85 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
...+.++|||+|||+.+++++|+++|..||.+..+ ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 44567899999999999999999999999887662 3334457888999999999999999999 599999999999999
Q ss_pred EcccCCC
Q 043064 165 WAFSNGP 171 (196)
Q Consensus 165 ~a~~~~~ 171 (196)
++.++..
T Consensus 87 ~~~~~~~ 93 (175)
T 1fje_B 87 KPKGRDS 93 (175)
T ss_dssp CCCCSSC
T ss_pred cCCCccc
Confidence 9976543
No 197
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.57 E-value=1.2e-14 Score=100.07 Aligned_cols=83 Identities=12% Similarity=0.247 Sum_probs=71.4
Q ss_pred CCCCEEEEcCC--CccCc--------HHHHHHhhccCCCeeEEEEeecCCC--CCcceEEEEEecCHHHHHHHHHHhCCc
Q 043064 87 IEGWIILVTGV--HEEAQ--------EDDLQNVFGEYGEIRNLHLNLDRRT--GFVKGYALIEYENFEEAQNAITAMNGG 154 (196)
Q Consensus 87 ~~~~~l~V~nL--p~~~t--------e~~L~~~F~~~G~i~~v~i~~~~~~--g~~~g~afv~f~~~~~a~~al~~l~~~ 154 (196)
.+++.|.|.|+ |..+. +++|++.|++||.|.+|.|+.++.+ +.++|++||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35788999998 43443 4799999999999999999887644 367899999999999999999999999
Q ss_pred eeCCcEeEEEEcccC
Q 043064 155 ELLTQTLTVDWAFSN 169 (196)
Q Consensus 155 ~l~g~~l~v~~a~~~ 169 (196)
.++|+.|+|.|+...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998543
No 198
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.53 E-value=1e-13 Score=104.71 Aligned_cols=77 Identities=19% Similarity=0.356 Sum_probs=67.1
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccC----C-------CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEY----G-------EIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGEL 156 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l 156 (196)
..++|||+|||+.+++++|+++|++| | .|..+.+. ..+|||||+|.+.++|++|+ .||+..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46789999999999999999999999 5 56666553 34899999999999999999 8999999
Q ss_pred CCcEeEEEEcccCCC
Q 043064 157 LTQTLTVDWAFSNGP 171 (196)
Q Consensus 157 ~g~~l~v~~a~~~~~ 171 (196)
.|+.|.|.++.+...
T Consensus 76 ~g~~i~v~~~~~~~~ 90 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQP 90 (198)
T ss_dssp TTEEEEEECCCCCCC
T ss_pred cCceEEEeCCCCCCC
Confidence 999999999877643
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.53 E-value=8e-15 Score=100.70 Aligned_cols=72 Identities=15% Similarity=0.366 Sum_probs=64.1
Q ss_pred EcCCCccCcHHHHHHhh------------ccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEe
Q 043064 94 VTGVHEEAQEDDLQNVF------------GEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTL 161 (196)
Q Consensus 94 V~nLp~~~te~~L~~~F------------~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l 161 (196)
+.||++.+++++|++.| ++||.|.+|.|+.+. ++.++|||||+|.+.++|.+|+..|||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777778887777666 999999999999875 57889999999999999999999999999999999
Q ss_pred EEEEc
Q 043064 162 TVDWA 166 (196)
Q Consensus 162 ~v~~a 166 (196)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99987
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.53 E-value=3.1e-14 Score=105.21 Aligned_cols=76 Identities=20% Similarity=0.375 Sum_probs=67.6
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccC----C-------CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEY----G-------EIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGEL 156 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l 156 (196)
+.++|||+|||+.+|+++|+++|++| | .|..+.+..+ +|||||+|.+.++|.+|+ .||+..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 45789999999999999999999999 6 6777766543 799999999999999999 8999999
Q ss_pred CCcEeEEEEcccCC
Q 043064 157 LTQTLTVDWAFSNG 170 (196)
Q Consensus 157 ~g~~l~v~~a~~~~ 170 (196)
.|+.|.|.++.+..
T Consensus 76 ~g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQ 89 (172)
T ss_dssp TTEECEEECCSSCC
T ss_pred cCceeeecCCcccC
Confidence 99999999986554
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.52 E-value=7e-14 Score=98.07 Aligned_cols=81 Identities=14% Similarity=0.284 Sum_probs=70.8
Q ss_pred CCCEEEEcCCCc--cC---cHHHHHHhhccCCCeeEEEEeecCC----CCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q 043064 88 EGWIILVTGVHE--EA---QEDDLQNVFGEYGEIRNLHLNLDRR----TGFVKGYALIEYENFEEAQNAITAMNGGELLT 158 (196)
Q Consensus 88 ~~~~l~V~nLp~--~~---te~~L~~~F~~~G~i~~v~i~~~~~----~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g 158 (196)
++++|+|.|+-. .+ .+++|++.|++||.|.+|.|+.++. ++..+|++||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578899999832 22 3689999999999999999998754 35678999999999999999999999999999
Q ss_pred cEeEEEEccc
Q 043064 159 QTLTVDWAFS 168 (196)
Q Consensus 159 ~~l~v~~a~~ 168 (196)
+.|+|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999854
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3.4e-13 Score=91.82 Aligned_cols=76 Identities=22% Similarity=0.316 Sum_probs=63.5
Q ss_pred CCEEEEcCCC-------ccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEe
Q 043064 89 GWIILVTGVH-------EEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTL 161 (196)
Q Consensus 89 ~~~l~V~nLp-------~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l 161 (196)
.++|-|.... ..+++++|+++|++||.|..|.|+ ++++|||||+|.+.++|+.|+..+++ +.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4556666544 468999999999999999999987 35689999999999999999987544 679999
Q ss_pred EEEEcccCCC
Q 043064 162 TVDWAFSNGP 171 (196)
Q Consensus 162 ~v~~a~~~~~ 171 (196)
+|.|+.+++.
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999987764
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.43 E-value=3.3e-13 Score=110.71 Aligned_cols=77 Identities=23% Similarity=0.348 Sum_probs=66.4
Q ss_pred CCCCCCEEEEcC--CCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC---Cc
Q 043064 85 RSIEGWIILVTG--VHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELL---TQ 159 (196)
Q Consensus 85 ~~~~~~~l~V~n--Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~---g~ 159 (196)
.+.++.+|||+| |+..+|+++|+++|++||.|..|.+.. .+|||||+|.+.++|++|++.|||..+. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 356788999999 578899999999999999999987753 3799999999999999999999999873 44
Q ss_pred --EeEEEEcc
Q 043064 160 --TLTVDWAF 167 (196)
Q Consensus 160 --~l~v~~a~ 167 (196)
.|.|.|+.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 68888874
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.37 E-value=3.4e-12 Score=88.86 Aligned_cols=79 Identities=11% Similarity=0.219 Sum_probs=66.4
Q ss_pred CCCCCEEEEcCCCccC----------cHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCce
Q 043064 86 SIEGWIILVTGVHEEA----------QEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGE 155 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~----------te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~ 155 (196)
..+++.|.|.|+=..- .+++|++.|++||.|.+|.|..+. .+|++||+|.+.++|.+|+..|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3467789999883211 236889999999999999886542 48999999999999999999999999
Q ss_pred eCCcEeEEEEccc
Q 043064 156 LLTQTLTVDWAFS 168 (196)
Q Consensus 156 l~g~~l~v~~a~~ 168 (196)
++|+.|+|.|+..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999999854
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=2.5e-11 Score=80.19 Aligned_cols=76 Identities=28% Similarity=0.454 Sum_probs=64.3
Q ss_pred CCCEEEEcCCCc----cCcH----HHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCc
Q 043064 88 EGWIILVTGVHE----EAQE----DDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQ 159 (196)
Q Consensus 88 ~~~~l~V~nLp~----~~te----~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~ 159 (196)
+..+|+|.-++. ++.. .+|...|++||.|..++++.++ +||+|.+.++|.+||. |||..++|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 345788877662 2323 6789999999999999998763 8999999999999998 999999999
Q ss_pred EeEEEEcccCCCC
Q 043064 160 TLTVDWAFSNGPS 172 (196)
Q Consensus 160 ~l~v~~a~~~~~~ 172 (196)
.|+|.++.|.+..
T Consensus 77 ~LkV~lkt~dW~~ 89 (91)
T 2dnr_A 77 TITIALKSPSGPS 89 (91)
T ss_dssp EEEEEECCCSSCS
T ss_pred EEEEEeCCCCccc
Confidence 9999999988764
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=7.7e-11 Score=82.47 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=68.2
Q ss_pred CCCCCCCCCEEEEcCCCcc-CcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecC-HHHHHHHHHHhC--CceeC
Q 043064 82 GPQRSIEGWIILVTGVHEE-AQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYEN-FEEAQNAITAMN--GGELL 157 (196)
Q Consensus 82 ~~~~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~-~~~a~~al~~l~--~~~l~ 157 (196)
+...-.+++.|||+||+.. ++.++|+++|++||.|..|.+..+. ..|||.|.+ ..+|..|+..|+ +..|.
T Consensus 11 ~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 11 GSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp CCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred CcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 3445667899999999999 9999999999999999999998764 259999999 899999999985 67799
Q ss_pred CcEeEEEEc
Q 043064 158 TQTLTVDWA 166 (196)
Q Consensus 158 g~~l~v~~a 166 (196)
|..+++...
T Consensus 85 g~~~~~evL 93 (121)
T 1owx_A 85 NKEVTWEVL 93 (121)
T ss_dssp SSSEEEEEC
T ss_pred CcEEEEEEC
Confidence 988888643
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=7.4e-10 Score=73.49 Aligned_cols=72 Identities=15% Similarity=0.259 Sum_probs=60.6
Q ss_pred CCCEEEEcCCCcc-----CcH----HHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q 043064 88 EGWIILVTGVHEE-----AQE----DDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLT 158 (196)
Q Consensus 88 ~~~~l~V~nLp~~-----~te----~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g 158 (196)
+..+|+|.-++.. +.. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+||. |+|..++|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 4567999887632 222 5689999999999999999773 9999999999999998 99999999
Q ss_pred cEeEEEEccc
Q 043064 159 QTLTVDWAFS 168 (196)
Q Consensus 159 ~~l~v~~a~~ 168 (196)
+.|+|.+..+
T Consensus 85 r~L~V~~k~~ 94 (95)
T 1ufw_A 85 RAVKISGPSS 94 (95)
T ss_dssp EEEEEECCCC
T ss_pred eEEEEeccCC
Confidence 9999997643
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.96 E-value=2.6e-09 Score=82.35 Aligned_cols=80 Identities=13% Similarity=0.270 Sum_probs=65.7
Q ss_pred CCEEEEcCCCc-----cCcHHHHHHhhccCCCeeEEEEeecC----CCCCcceEEEEEecCHHHHHHHHHHhCCceeCCc
Q 043064 89 GWIILVTGVHE-----EAQEDDLQNVFGEYGEIRNLHLNLDR----RTGFVKGYALIEYENFEEAQNAITAMNGGELLTQ 159 (196)
Q Consensus 89 ~~~l~V~nLp~-----~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~ 159 (196)
...+.+.|+-. .-.+++|...|++||.|.++.|+.+. .++..+|++||+|.+.++|.+|+..|||..++|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 34455555422 33568999999999999999998554 3458899999999999999999999999999999
Q ss_pred EeEEEEccc
Q 043064 160 TLTVDWAFS 168 (196)
Q Consensus 160 ~l~v~~a~~ 168 (196)
.|.|.|...
T Consensus 204 ~i~~~~~~~ 212 (222)
T 3dxb_A 204 KVVAEVYDQ 212 (222)
T ss_dssp BCEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999753
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.65 E-value=1.4e-07 Score=63.91 Aligned_cols=71 Identities=15% Similarity=0.193 Sum_probs=65.5
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccC-----CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeE
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEY-----GEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLT 162 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~ 162 (196)
..++|-|-|||..++...|+.++..+ |.|..+.+..+ .+-|+|+|.+...|-+|.-.|+|..|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 35779999999999999999999999 99999999877 45699999999999999999999999999999
Q ss_pred EE
Q 043064 163 VD 164 (196)
Q Consensus 163 v~ 164 (196)
+.
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 86
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.19 E-value=5.2e-06 Score=55.87 Aligned_cols=76 Identities=12% Similarity=0.153 Sum_probs=63.2
Q ss_pred CCEEEEcCCCccC-c----HHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEE
Q 043064 89 GWIILVTGVHEEA-Q----EDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTV 163 (196)
Q Consensus 89 ~~~l~V~nLp~~~-t----e~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v 163 (196)
.++|+|.||+..+ . ...++.+|..|+++....+...- .-..|.|.+.++|.+|-..||+..+.|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3569999998865 2 25789999999998887766542 23689999999999999999999999999999
Q ss_pred EEcccCC
Q 043064 164 DWAFSNG 170 (196)
Q Consensus 164 ~~a~~~~ 170 (196)
-|+.+..
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9998543
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=0.00038 Score=46.63 Aligned_cols=76 Identities=16% Similarity=0.146 Sum_probs=60.5
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHhhcc-----CCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcE
Q 043064 86 SIEGWIILVTGVHEEAQEDDLQNVFGE-----YGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQT 160 (196)
Q Consensus 86 ~~~~~~l~V~nLp~~~te~~L~~~F~~-----~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~ 160 (196)
+.-..+|.|.|||+.+.++.|.-+|.. -|+|..+.... +-|+|+|.+...|++.|+. ..+.|.+..
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~ 75 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQ 75 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSB
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeE
Confidence 344678999999999999999999976 36788876642 3589999999999999853 478899999
Q ss_pred eEEEEcccCC
Q 043064 161 LTVDWAFSNG 170 (196)
Q Consensus 161 l~v~~a~~~~ 170 (196)
|.|.-..++.
T Consensus 76 LsV~P~~~~~ 85 (104)
T 2dhx_A 76 LSLRPAPPRA 85 (104)
T ss_dssp CEEEECCCCC
T ss_pred EEEEcCCCCC
Confidence 9996544443
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.77 E-value=0.00022 Score=46.99 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=59.2
Q ss_pred CEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCC--CcceEEEEEecCHHHHHHHHHHhCCceeCC-----cEeE
Q 043064 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTG--FVKGYALIEYENFEEAQNAITAMNGGELLT-----QTLT 162 (196)
Q Consensus 90 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g--~~~g~afv~f~~~~~a~~al~~l~~~~l~g-----~~l~ 162 (196)
++|.|++||+.+|++++.+.++.+..+....++....+. ...+-|||.|.+.+++..-...++|+.+.. .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 478999999999999999999998776655555443332 234569999999999999999999998632 2345
Q ss_pred EEEc
Q 043064 163 VDWA 166 (196)
Q Consensus 163 v~~a 166 (196)
|++|
T Consensus 82 VE~A 85 (91)
T 1uw4_A 82 VEFA 85 (91)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6666
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.42 E-value=0.00065 Score=44.99 Aligned_cols=56 Identities=21% Similarity=0.335 Sum_probs=46.5
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMN 152 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~ 152 (196)
..+.++| +.|+.+...+|..+|+.||.| .|.|+-+- .|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3566777 999999999999999999954 56666552 69999999999999998663
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.32 E-value=0.0016 Score=44.90 Aligned_cols=72 Identities=17% Similarity=0.255 Sum_probs=56.5
Q ss_pred CCCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC-cEeEEEE
Q 043064 87 IEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLT-QTLTVDW 165 (196)
Q Consensus 87 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g-~~l~v~~ 165 (196)
...+.|.|-+.|+.. -..+...|++||.|.+.... .+ ..+.+|.|.+..+|++||. .||..|+| ..|-|..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~~--~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----NT--GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----SS--SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----CC--CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 346778999999985 56677899999999987652 12 3589999999999999995 59999975 5666655
Q ss_pred c
Q 043064 166 A 166 (196)
Q Consensus 166 a 166 (196)
-
T Consensus 94 ~ 94 (119)
T 1wwh_A 94 C 94 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.26 E-value=0.00058 Score=45.36 Aligned_cols=54 Identities=19% Similarity=0.275 Sum_probs=45.5
Q ss_pred CEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 043064 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMN 152 (196)
Q Consensus 90 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~ 152 (196)
+.++| +.|+.+...+|..+|+.|| -..|.|+-+- .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999998 4467776552 69999999999999998764
No 216
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.04 E-value=8.4e-05 Score=50.97 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=18.0
Q ss_pred CCcCcccccCCCcHHHHHHhhhhcccCCCCCCC---------------CCCCCCCCCEEEEcCCCccCcHHH
Q 043064 49 KTKGRGFREEADSERHSRLADRNFESLGTDGGP---------------GPQRSIEGWIILVTGVHEEAQEDD 105 (196)
Q Consensus 49 ~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~l~V~nLp~~~te~~ 105 (196)
+++|||||.|.+.+. +..+...++.....+.. ........++|||+|||+.+|++.
T Consensus 43 ~~kg~afV~f~~~~~-A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 43 GSKGYGFVHFETQEA-AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp EEEEEEEEEESCHHH-HHHHHHHHTTCEETTEECEEEESSCCCC----------------------------
T ss_pred CCCceEEEEECCHHH-HHHHHHHcCCCEECCEEEEEEECCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 478999999995444 44344444443332211 011223356799999999998764
No 217
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.98 E-value=0.0023 Score=42.43 Aligned_cols=78 Identities=10% Similarity=0.135 Sum_probs=53.8
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCC--CcceEEEEEecCHHHHHHHHHHhCCceeCC-----cEe
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTG--FVKGYALIEYENFEEAQNAITAMNGGELLT-----QTL 161 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g--~~~g~afv~f~~~~~a~~al~~l~~~~l~g-----~~l 161 (196)
+-+|.|+.||+.+|++++.+.++.+-.+....++....+. ..-.-|||.|.+.++...-.+.++|+.+.. .+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 4569999999999999998888775443222222211111 122458999999999999999999998632 245
Q ss_pred EEEEc
Q 043064 162 TVDWA 166 (196)
Q Consensus 162 ~v~~a 166 (196)
.|+||
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 56666
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.19 E-value=0.013 Score=40.91 Aligned_cols=75 Identities=24% Similarity=0.210 Sum_probs=53.4
Q ss_pred CEEEEcCCCccCcHHHHHHhhccCCCeeE-EEEeec------------CCCC-CcceEEEEEecCHHHHHHHHHHhCCce
Q 043064 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRN-LHLNLD------------RRTG-FVKGYALIEYENFEEAQNAITAMNGGE 155 (196)
Q Consensus 90 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~------------~~~g-~~~g~afv~f~~~~~a~~al~~l~~~~ 155 (196)
..|.|-+.|+..+ ..+...|++||.|.+ +.+... +-.. ....+..|.|.+..+|.+||. .||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 4577888988755 556778999999866 211110 0000 124588999999999999995 69999
Q ss_pred eCCcEeEEEEc
Q 043064 156 LLTQTLTVDWA 166 (196)
Q Consensus 156 l~g~~l~v~~a 166 (196)
|+|..|-|...
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 99988777654
No 219
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.02 E-value=0.0035 Score=53.10 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=41.2
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAIT 149 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~ 149 (196)
.+.|+|. .|..+++.+|.++|++||+|.++.+..+. .-|+.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 4679997 79999999999999999999998776543 3699999999988887753
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.31 E-value=0.007 Score=43.02 Aligned_cols=42 Identities=19% Similarity=0.076 Sum_probs=37.7
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHh-CCceeCCcEeEEEEcccC
Q 043064 127 TGFVKGYALIEYENFEEAQNAITAM-NGGELLTQTLTVDWAFSN 169 (196)
Q Consensus 127 ~g~~~g~afv~f~~~~~a~~al~~l-~~~~l~g~~l~v~~a~~~ 169 (196)
..+.+|+++|+|.+.+.|++|++.+ |+..|+| .|.+.++.++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 4467899999999999999999999 9999999 9999988654
No 221
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.22 E-value=0.025 Score=40.29 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=27.4
Q ss_pred EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCc
Q 043064 119 LHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGG 154 (196)
Q Consensus 119 v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~ 154 (196)
+.|..+. .+.+||+||+|.+.++|++|+..+++.
T Consensus 3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 4555553 367999999999999999999887754
No 222
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=94.02 E-value=0.0048 Score=41.74 Aligned_cols=65 Identities=12% Similarity=0.101 Sum_probs=38.5
Q ss_pred CCcCcccccCCCcHHHHHHhhhhcccCCCCCCCCCCCCCCCCEEEEcCCCccCcHHHHHHhhccCCC
Q 043064 49 KTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGE 115 (196)
Q Consensus 49 ~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~ 115 (196)
.++|+|||.|.+ ..++..+...+++....+......-.... --..+++...++++|..+|++||.
T Consensus 45 ~~~g~afV~f~~-~~~A~~A~~~l~g~~~~g~~l~v~~a~~~-~~~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 45 ETRGTAYVVYED-IFDAKNAVDHLSGFNVSNRYLVVLYYNAN-RAFQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp TTTTCEEEEESS-HHHHHHHHHHHTTCBSSSCBCEEEECCHH-HHTTTSCHHHHHHHHHHHHHHHCC
T ss_pred CCCcEEEEEECC-HHHHHHHHHHcCCCEECCeEEEEEEecCC-hhhhhhhHhHhHHHHHHHHHHhCC
Confidence 468999999994 44444454556655443322110000000 001567788899999999999974
No 223
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=93.44 E-value=0.053 Score=35.46 Aligned_cols=48 Identities=19% Similarity=0.123 Sum_probs=27.1
Q ss_pred CcCcccccCCCcHHHHHHhhhhcccCCCCCCC-----------------CCCCCCCCCEEEEcCCC
Q 043064 50 TKGRGFREEADSERHSRLADRNFESLGTDGGP-----------------GPQRSIEGWIILVTGVH 98 (196)
Q Consensus 50 ~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~V~nLp 98 (196)
++|||||.|.+.+.+ ..+...++.....+.. .+.......+|||+||+
T Consensus 36 ~~g~afV~f~~~~~a-~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDA-EDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SSSEEEEECSSHHHH-HHHHHHHHHSCSSSCCCEEEESSSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCCEEEEEECCHHHH-HHHHHHHCCCeECCcEEEEEEccCCCCcccCCCCCccccCCCceecCCCC
Confidence 689999999954444 3333334433222211 11122236789999986
No 224
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=91.74 E-value=0.16 Score=32.97 Aligned_cols=47 Identities=11% Similarity=0.224 Sum_probs=32.2
Q ss_pred CcCcccccCCCcHHHHHHhhhhcccCCCCCCCCCCCCCCCCEEEEcCCCccCcHHHHHHhhc
Q 043064 50 TKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFG 111 (196)
Q Consensus 50 ~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~ 111 (196)
+||||||+|. +...+.++...++... ..+++|.|. ..++.++..+|.
T Consensus 42 ~kGfaFVey~-~~~eA~~Ai~~Ln~~~----------l~gr~I~V~----~A~e~~~~~~~~ 88 (89)
T 2wbr_A 42 NQGIALCKYT-TREEANKAQMALNNCV----------LANTTIFAE----SPSENEVQSIMQ 88 (89)
T ss_dssp TTTEEEEEES-SHHHHHHHHHHHTTEE----------ETTEEEEEE----CCCHHHHHHHHC
T ss_pred CCcEEEEEEC-CHHHHHHHHHHhcCCE----------ECCcEEEEE----ECCHHHHHHHhh
Confidence 7999999999 5556666666666533 345667774 237788887775
No 225
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.25 E-value=0.93 Score=38.79 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=45.2
Q ss_pred CCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 043064 89 GWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNG 153 (196)
Q Consensus 89 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~ 153 (196)
.+.++|+ +|..+...+|.++|+.||. ..|.++-+ ..|||.|.+.+.|..++..+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 4667776 8888999999999999995 45666543 3599999999999999988753
No 226
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=90.00 E-value=0.27 Score=31.24 Aligned_cols=44 Identities=14% Similarity=0.033 Sum_probs=27.1
Q ss_pred CCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCCCC
Q 043064 31 PRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDG 79 (196)
Q Consensus 31 ~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~ 79 (196)
.+..+..+++. .+++++|||||.|.+ ..++..+...+++....+
T Consensus 29 ~v~~v~i~~~~----~~g~~kG~afV~f~~-~~~a~~Ai~~l~g~~~~g 72 (90)
T 3p5t_L 29 DILEIKFFENR----ANGQSKGFALVGVGS-EASSKKLMDLLPKRELHG 72 (90)
T ss_dssp CCCCEEEEECT----TTCCEEEEEEECC-C-HHHHHHHHHHGGGSCSSS
T ss_pred ceEEEEEEecC----CCCccCcEEEEEECC-HHHHHHHHHHcCCCeeCC
Confidence 34556666665 355889999999994 444444555666654443
No 227
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=87.92 E-value=0.22 Score=32.50 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=24.0
Q ss_pred CCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhccc
Q 043064 33 APQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFES 74 (196)
Q Consensus 33 ~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~ 74 (196)
..+..+++. .++++||||||.|.+.+.+.+ +...++.
T Consensus 39 ~~v~i~~d~----~tg~srG~aFV~f~~~~~A~~-Ai~~lng 75 (95)
T 2lkz_A 39 NNIRLIKDK----QTQQNRGFAFVQLSSAMDASQ-LLQILQS 75 (95)
T ss_dssp GGEECCCCS----SSSSCSSEEEEECSSSHHHHH-HHHHHHS
T ss_pred EEEEEEecC----CCCCCceEeEEEECCHHHHHH-HHHHhcC
Confidence 355666665 456899999999996555444 3344443
No 228
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=87.81 E-value=0.29 Score=31.40 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=21.6
Q ss_pred CCCcccccccccCCCCCCCcCcccccCCCcHHHHH
Q 043064 32 RAPQPKLKSAITGGAPKKTKGRGFREEADSERHSR 66 (196)
Q Consensus 32 ~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~ 66 (196)
+..+..+++. .+++++|||||.|.+.+.+.+
T Consensus 29 v~~v~i~~d~----~t~~~rg~aFV~F~~~~~A~~ 59 (91)
T 2lxi_A 29 AREVRLMRNK----SSGQSRGFAFVEFSHLQDATR 59 (91)
T ss_dssp CSBCCSSSCS----SSCCCSSEEEEECSSHHHHHH
T ss_pred eEEEEEEecC----CCCCcCceEEEEecCHHHHHH
Confidence 4456666665 456899999999995555444
No 229
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=86.21 E-value=0.24 Score=32.35 Aligned_cols=40 Identities=20% Similarity=0.073 Sum_probs=24.7
Q ss_pred CCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCC
Q 043064 32 RAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLG 76 (196)
Q Consensus 32 ~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~ 76 (196)
+..+..+++. .+++++|||||.|.+ ...+..+...+++..
T Consensus 39 i~~v~i~~d~----~tg~~kG~afV~f~~-~~~A~~Ai~~lng~~ 78 (100)
T 3ns6_A 39 VVNMEFPIDE----ATGKTKGFLFVECGS-MNDAKKIIKSFHGKR 78 (100)
T ss_dssp EEEEECCEET----TTTEECSEEEEEESS-HHHHHHHHHHHTTCB
T ss_pred EeEEEEEEcC----CCCccceEEEEEECC-HHHHHHHHHHhCCcc
Confidence 3445555554 446899999999994 444444444555543
No 230
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=85.35 E-value=0.63 Score=28.76 Aligned_cols=32 Identities=34% Similarity=0.252 Sum_probs=21.2
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcccCCCCC
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFESLGTDG 79 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~ 79 (196)
+++++||||+.|.+ ..++..+...+++....+
T Consensus 43 ~g~~~g~afV~f~~-~~~A~~Ai~~lng~~~~g 74 (81)
T 2krb_A 43 DGKTKGYIFLEYAS-PAHAVDAVKNADGYKLDK 74 (81)
T ss_dssp TTBCCCEEEEEESS-HHHHHHHHTTSSSCCCSS
T ss_pred CCcEeEEEEEEECC-HHHHHHHHHHhcCcccCC
Confidence 45789999999994 444554555566554443
No 231
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=83.90 E-value=0.26 Score=32.91 Aligned_cols=41 Identities=12% Similarity=0.001 Sum_probs=26.0
Q ss_pred CCCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccC
Q 043064 30 SPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESL 75 (196)
Q Consensus 30 ~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~ 75 (196)
+++..+..+++. .+++++|||||.|.+ ..++..+...++..
T Consensus 31 G~i~~v~i~~d~----~tg~~rG~aFV~f~~-~~~A~~Ai~~lng~ 71 (110)
T 3s8s_A 31 GEVEEVEILLHP----RTRKHLGLARVLFTS-TRGAKETVKNLHLT 71 (110)
T ss_dssp SCEEEEEEEECT----TTCCEEEEEEEEESS-HHHHHHHHHHHTTC
T ss_pred CCeeEEEEEECC----CCCceeeEEEEEECC-HHHHHHHHHHhCCC
Confidence 444455555555 456899999999995 44444454555554
No 232
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=83.48 E-value=0.88 Score=31.07 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=23.0
Q ss_pred cccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccC
Q 043064 35 QPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESL 75 (196)
Q Consensus 35 ~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~ 75 (196)
+..+++. .+++++|||||.|.+. .+..+...++..
T Consensus 55 v~i~~d~----~tg~~rG~aFV~f~~~--~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 55 VRVIKDK----QTQLNRGFAFIQLSTI--EAAQLLQILQAL 89 (131)
T ss_dssp EECCBCS----SSSSBCSCEEEECCHH--HHHHHHHHHTTC
T ss_pred EEEEEcC----CCCCcceEEEEEECCH--HHHHHHHHhcCC
Confidence 5555555 3568999999999944 444444555554
No 233
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=83.00 E-value=1.4 Score=26.61 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=21.4
Q ss_pred CCCCCcccccccccCCCCCCCcCcccccCCCcHHHHH
Q 043064 30 SPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSR 66 (196)
Q Consensus 30 ~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~ 66 (196)
++...+..+++. .+++++|+||+.|.+.+.+..
T Consensus 25 G~v~~v~i~~~~----~~~~~~g~afV~f~~~~~a~~ 57 (77)
T 1uaw_A 25 GEVKECLVMRDP----LTKRSRGFGFVTFMDQAGVDK 57 (77)
T ss_dssp SCCCCEEEECCC----CSSSCSSEEEECCCCTTHHHH
T ss_pred CCEEEEEEecCC----CCCCcCceEEEEEcCHHHHHH
Confidence 344455555554 356789999999995555444
No 234
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=82.41 E-value=1.5 Score=26.32 Aligned_cols=30 Identities=10% Similarity=0.099 Sum_probs=18.9
Q ss_pred CCCcccccccccCCCCCCCcCcccccCCCcHHHH
Q 043064 32 RAPQPKLKSAITGGAPKKTKGRGFREEADSERHS 65 (196)
Q Consensus 32 ~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~ 65 (196)
...+..+++. .+++++|++|+.|.+...+.
T Consensus 26 i~~v~i~~~~----~~~~~~g~afV~f~~~~~a~ 55 (75)
T 2mss_A 26 VDDAMLMFDK----TTNRHRGFGFVTFESEDIVE 55 (75)
T ss_dssp CSEECCCBCS----SSTTSCBEEEEECSCHHHHH
T ss_pred EEEEEEEecC----CCCCcCcEEEEEECCHHHHH
Confidence 3344444443 34578999999999554443
No 235
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.28 E-value=1.5 Score=28.21 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=19.9
Q ss_pred CCCCCcCcccccCCCcHHHHHHhhhhcccCCC
Q 043064 46 APKKTKGRGFREEADSERHSRLADRNFESLGT 77 (196)
Q Consensus 46 ~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~ 77 (196)
.+.+++||+||.|.+ ...+..+...++....
T Consensus 49 ~~~~~~g~afV~f~~-~~~A~~A~~~l~g~~~ 79 (102)
T 1x5s_A 49 ETQRSRGFGFVTFEN-IDDAKDAMMAMNGKSV 79 (102)
T ss_dssp SSCSCCSEEEEECSS-HHHHHHHHHHHTTCCT
T ss_pred CCCCcccEEEEEECC-HHHHHHHHHHhCCCEE
Confidence 345789999999994 4444444445555443
No 236
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=81.60 E-value=1.1 Score=30.67 Aligned_cols=31 Identities=10% Similarity=0.169 Sum_probs=20.6
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcccCCCC
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFESLGTD 78 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~ 78 (196)
+.+++|||||.|.+ ..++..+...+++....
T Consensus 68 ~~~~rG~aFV~F~~-~~~A~~Ai~~lng~~l~ 98 (127)
T 2a3j_A 68 SDDNSGKAYIVFAT-QESAQAFVEAFQGYPFQ 98 (127)
T ss_dssp CCSSCCCEEEEESS-HHHHHHHHHHSTTCCCT
T ss_pred CCCcCCEEEEEECC-HHHHHHHHHHHCCCEeC
Confidence 34789999999994 44455455566665443
No 237
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=81.53 E-value=0.31 Score=31.84 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=24.8
Q ss_pred CCCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccC
Q 043064 30 SPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESL 75 (196)
Q Consensus 30 ~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~ 75 (196)
+++..+..+++. .+++++|||||.|.+. .++..+...+++.
T Consensus 44 G~I~~v~i~~d~----~tg~~kG~afV~f~~~-~~A~~Ai~~lng~ 84 (99)
T 4fxv_A 44 GEVESAKLIRDK----VAGHSLGYGFVNYVTA-KDAERAINTLNGL 84 (99)
T ss_dssp SCEEEEEEEECS----SSCCEEEEEEEEESSH-HHHHHHHHHHTTC
T ss_pred CCEEEeEeeecC----CCCcccccEEEEECCH-HHHHHHHHHhCCC
Confidence 334445555554 4568899999999954 4444444455443
No 238
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=80.84 E-value=1.2 Score=27.99 Aligned_cols=41 Identities=22% Similarity=0.190 Sum_probs=24.9
Q ss_pred CCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCCCC
Q 043064 33 APQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDG 79 (196)
Q Consensus 33 ~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~ 79 (196)
..+..+++. .+++++|||||.|.+.+ +..+...+++....+
T Consensus 29 ~~v~i~~~~----~~~~~~g~afV~f~~~~--a~~a~~~l~g~~~~g 69 (90)
T 2ki2_A 29 FNVKLIYDR----ETKKPKGFGFVEMQEES--VSEAIAKLDNTDFMG 69 (90)
T ss_dssp SEEEECCCS----SSCCCCEEEEEEECTTH--HHHHHHTSCSSCCSS
T ss_pred EEEEEEEcC----CCCCcceEEEEEECCHH--HHHHHHHhCCCEECC
Confidence 344444444 34578999999999655 444445555554433
No 239
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.72 E-value=0.92 Score=29.79 Aligned_cols=31 Identities=16% Similarity=0.009 Sum_probs=19.9
Q ss_pred CCCCcccccccccCCCCCCCcCcccccCCCcHHHHH
Q 043064 31 PRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSR 66 (196)
Q Consensus 31 ~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~ 66 (196)
++..+..+++. .++++|||||.|.+.+.+..
T Consensus 37 ~v~~v~i~~d~-----~g~~rG~aFV~F~~~e~a~~ 67 (103)
T 1s79_A 37 QVLNIQMRRTL-----HKAFKGSIFVVFDSIESAKK 67 (103)
T ss_dssp CEEEEEEECCC-----TTSCCCEEEEEESSHHHHHH
T ss_pred CEEEEEEEECC-----CCCCccEEEEEECCHHHHHH
Confidence 33445555543 26799999999995444444
No 240
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=78.63 E-value=2 Score=27.82 Aligned_cols=38 Identities=18% Similarity=0.119 Sum_probs=22.7
Q ss_pred CCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccC
Q 043064 33 APQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESL 75 (196)
Q Consensus 33 ~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~ 75 (196)
..+..+++. .+++++||+||.|.+... +..+...++..
T Consensus 41 ~~v~i~~~~----~~g~~~g~afV~f~~~~~-A~~A~~~l~g~ 78 (106)
T 2dgp_A 41 YELTVLKDR----FTGMHKGCAFLTYCERES-ALKAQSALHEQ 78 (106)
T ss_dssp CEEECCCCS----SSCSCCSEEEEEESSHHH-HHHHHHHHTTT
T ss_pred eEEEEEecC----CCCCcceEEEEEECCHHH-HHHHHHHhcCC
Confidence 344444443 345789999999995444 44444455543
No 241
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.34 E-value=1.1 Score=28.96 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=19.7
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcccCCC
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFESLGT 77 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~ 77 (196)
+.+++||+||.|.+ ...+..+...++....
T Consensus 53 ~~~~~g~afV~f~~-~~~a~~A~~~l~g~~~ 82 (105)
T 1x5u_A 53 TGQHQGYGFVEFLS-EEDADYAIKIMDMIKL 82 (105)
T ss_dssp SCSBCSCEEEEESS-HHHHHHHHHHSSSCBC
T ss_pred CCcCCcEEEEEECC-HHHHHHHHHHhCCCeE
Confidence 56789999999995 4444444455555433
No 242
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=78.18 E-value=2.6 Score=27.51 Aligned_cols=30 Identities=13% Similarity=0.106 Sum_probs=19.6
Q ss_pred CCCcccccccccCCCCCCCcCcccccCCCcHHHHH
Q 043064 32 RAPQPKLKSAITGGAPKKTKGRGFREEADSERHSR 66 (196)
Q Consensus 32 ~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~ 66 (196)
+..+..+++. .++++|||||.|.+.+.+..
T Consensus 41 v~~v~i~~~~-----~g~~~G~afV~F~~~~~a~~ 70 (107)
T 2lmi_A 41 ENGIHFLLNR-----DGKRRGDALIEMESEQDVQK 70 (107)
T ss_dssp TTTEECCCCT-----TSTTCSEEEEEBSSHHHHHH
T ss_pred cceEEEEECC-----CCCEeeEEEEEECCHHHHHH
Confidence 3455555554 36889999999995444443
No 243
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=78.07 E-value=4.2 Score=28.09 Aligned_cols=62 Identities=15% Similarity=0.167 Sum_probs=34.2
Q ss_pred CCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCCCCCCCCCCCCCCCEEEEcCCCccCcHHHHHHhhc
Q 043064 32 RAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFG 111 (196)
Q Consensus 32 ~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~ 111 (196)
+..+..+++. .++++|||||.|.+.+. +..+.. ++... ..++.|.|.- .+..++.....
T Consensus 74 v~~v~i~~d~-----~g~srG~aFV~F~~~e~-a~~Al~-~~g~~----------l~gr~i~V~~----a~~~e~~~~~~ 132 (136)
T 2hgl_A 74 AAGVHFIYTR-----EGRQSGEAFVELGSEDD-VKMALK-KDRES----------MGHRYIEVFK----SHRTEMDWVLK 132 (136)
T ss_dssp STTEEEEECS-----SSCEEEEEEEECSSHHH-HHHHHT-TTEEE----------SSSSEEEEEE----CCHHHHHHHHT
T ss_pred eeEEEEEECC-----CCCCCeEEEEEECCHHH-HHHHHh-cCCCE----------ECCEEEEEEE----CChHHHHHHHh
Confidence 3455555554 36889999999995444 443433 43322 2345666642 24455555554
Q ss_pred cCC
Q 043064 112 EYG 114 (196)
Q Consensus 112 ~~G 114 (196)
..|
T Consensus 133 ~~~ 135 (136)
T 2hgl_A 133 HSG 135 (136)
T ss_dssp TSC
T ss_pred hcC
Confidence 443
No 244
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.35 E-value=1.1 Score=28.61 Aligned_cols=39 Identities=13% Similarity=0.033 Sum_probs=23.6
Q ss_pred CcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCC
Q 043064 34 PQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGT 77 (196)
Q Consensus 34 ~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~ 77 (196)
.+..+++. .+++++||+||.|.+. ..+..+...++....
T Consensus 39 ~v~i~~~~----~~g~~~g~afV~f~~~-~~a~~A~~~l~g~~~ 77 (99)
T 2div_A 39 SVKIIRNR----LTGIPAGYCFVEFADL-ATAEKCLHKINGKPL 77 (99)
T ss_dssp EEEEEECS----SSCCEEEEEEEECSCH-HHHHHHHHTTTTSEE
T ss_pred EEEEeecC----CCCCcCCEEEEEeCCH-HHHHHHHHHHcCCcc
Confidence 45555554 3557899999999944 444444444554433
No 245
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=77.13 E-value=2.8 Score=28.81 Aligned_cols=30 Identities=20% Similarity=0.219 Sum_probs=19.3
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcccCCC
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFESLGT 77 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~ 77 (196)
+++++||+||.|.+ ...+..+...++....
T Consensus 85 ~g~~~G~afV~F~~-~~~A~~Ai~~l~g~~i 114 (135)
T 2lea_A 85 TKESRGFAFVRFHD-KRDAEDAMDAMDGAVL 114 (135)
T ss_dssp SSSCCSCCEEECSC-HHHHHHHHTTTTTCCS
T ss_pred CCccceEEEEEECC-HHHHHHHHHHcCCCEE
Confidence 56789999999995 4444444444554433
No 246
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.96 E-value=1.4 Score=28.37 Aligned_cols=41 Identities=27% Similarity=0.278 Sum_probs=24.3
Q ss_pred CCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCC
Q 043064 31 PRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLG 76 (196)
Q Consensus 31 ~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~ 76 (196)
+...+..+++. .+++++|||||.|.+ ...+..+...+++..
T Consensus 34 ~i~~~~i~~~~----~~g~~~g~afV~f~~-~~~a~~A~~~l~g~~ 74 (104)
T 1p1t_A 34 PVVSFRLVYDR----ETGKPKGYGFCEYQD-QETALSAMRNLNGRE 74 (104)
T ss_dssp CCSEEEEEEET----TTTEEEEEEEEECSC-HHHHHHHHHHSSSBS
T ss_pred CeeEEEEEeCC----CCCccceEEEEEECC-HHHHHHHHHHhCCCe
Confidence 33445555554 345789999999994 444444444555443
No 247
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.96 E-value=1.4 Score=27.89 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=20.0
Q ss_pred CCCCCcCcccccCCCcHHHHHHhhhhcccCCC
Q 043064 46 APKKTKGRGFREEADSERHSRLADRNFESLGT 77 (196)
Q Consensus 46 ~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~ 77 (196)
.+.+++||+||.|.+ ...+..+...++....
T Consensus 42 ~~~~~~g~afV~f~~-~~~a~~A~~~l~g~~~ 72 (95)
T 2dnz_A 42 DTGRSKGYGFITFSD-SECARRALEQLNGFEL 72 (95)
T ss_dssp SSCCCCSEEEEEESC-HHHHHHHHHHHTTCCS
T ss_pred CCCceeeEEEEEECC-HHHHHHHHHHhCCCee
Confidence 345789999999995 4444444455555443
No 248
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.64 E-value=1.6 Score=27.98 Aligned_cols=40 Identities=18% Similarity=0.060 Sum_probs=23.8
Q ss_pred CCCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhccc
Q 043064 30 SPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFES 74 (196)
Q Consensus 30 ~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~ 74 (196)
.++..+..+++. .+++++||+||.|.+.+. +..+...++.
T Consensus 37 G~i~~v~i~~~~----~~~~~~g~afV~f~~~~~-A~~A~~~l~g 76 (102)
T 2cqb_A 37 GDITDIQIPLDY----ETEKHRGFAFVEFELAED-AAAAIDNMNE 76 (102)
T ss_dssp SCCCCEECCCCS----SSCCCSSEEEECCSSHHH-HHHHHHHHTT
T ss_pred CCEEEEEEEecC----CCCCcceEEEEEECCHHH-HHHHHHHhCC
Confidence 344455555554 345789999999995444 4434444443
No 249
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.60 E-value=1.8 Score=27.40 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=18.1
Q ss_pred CCCCCcCcccccCCCcHHHHHHhhhhccc
Q 043064 46 APKKTKGRGFREEADSERHSRLADRNFES 74 (196)
Q Consensus 46 ~~~~~kG~gf~~~~~~~~~~~~~~~~~~~ 74 (196)
.+++++||+||.|.+.+ .+..+...++.
T Consensus 43 ~~g~~~g~afV~f~~~~-~A~~A~~~l~g 70 (96)
T 1x5t_A 43 DTGNSKGYAFINFASFD-ASDAAIEAMNG 70 (96)
T ss_dssp TTCSCCSEEEEEBSSHH-HHHHHHHTTTT
T ss_pred CCCCcCeEEEEEECCHH-HHHHHHHHcCC
Confidence 35578999999999544 44444444444
No 250
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=76.59 E-value=1.5 Score=28.16 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=19.4
Q ss_pred CCCCCcCcccccCCCcHHHHHHhhhhcccCC
Q 043064 46 APKKTKGRGFREEADSERHSRLADRNFESLG 76 (196)
Q Consensus 46 ~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~ 76 (196)
.+++++|||||.|.+.+ .+..+...+++..
T Consensus 58 ~~g~~~G~afV~f~~~~-~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 58 ETGKLKGEATVSFDDPP-SAKAAIDWFDGKE 87 (99)
T ss_dssp TTCSEEEEEEEEBSSHH-HHHHHHHHHTTCB
T ss_pred CCCCeeeEEEEEECCHH-HHHHHHHHhCCCE
Confidence 34578999999999544 4444444555543
No 251
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=76.10 E-value=1.7 Score=29.69 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=20.7
Q ss_pred CCCCCcCcccccCCCcHHHHHHhhhhcccCCCC
Q 043064 46 APKKTKGRGFREEADSERHSRLADRNFESLGTD 78 (196)
Q Consensus 46 ~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~ 78 (196)
.+++++|||||.|.+ ...+..+...++.....
T Consensus 83 ~tg~~~G~afV~F~~-~~~A~~Ai~~lng~~i~ 114 (129)
T 2kxn_B 83 QSRRSRGFAFVYFEN-VDDAKEAKERANGMELD 114 (129)
T ss_dssp SSSCCCCEEEEEESC-HHHHHHHHHHHTTCCSS
T ss_pred CCCccceEEEEEECC-HHHHHHHHHHhCCCEEC
Confidence 345789999999994 44444454555554443
No 252
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.06 E-value=1 Score=27.90 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=20.6
Q ss_pred CCCCCcCcccccCCCcHHHHHHhhhhcccCCCCC
Q 043064 46 APKKTKGRGFREEADSERHSRLADRNFESLGTDG 79 (196)
Q Consensus 46 ~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~ 79 (196)
.+++++|||||.|.+ ...+..+...++.....+
T Consensus 42 ~~~~~~g~afV~f~~-~~~a~~A~~~l~g~~~~g 74 (85)
T 1x4e_A 42 TTNKCKGYGFVDFDS-PSAAQKAVTALKASGVQA 74 (85)
T ss_dssp SSCSCCSEEEEEESC-HHHHHHHHHHHHHHTCCE
T ss_pred CCCCcCcEEEEEECC-HHHHHHHHHHhcCCeEee
Confidence 345789999999995 444444444555544433
No 253
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=76.01 E-value=2.1 Score=25.60 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=15.9
Q ss_pred CCCCCcCcccccCCCcHHHHH
Q 043064 46 APKKTKGRGFREEADSERHSR 66 (196)
Q Consensus 46 ~~~~~kG~gf~~~~~~~~~~~ 66 (196)
.+++++|+||+.|.+...+..
T Consensus 36 ~~~~~~g~afV~f~~~~~a~~ 56 (75)
T 1iqt_A 36 KTNKRRGFCFITFKEEEPVKK 56 (75)
T ss_dssp CCSSSCCCEEEECSSSHHHHH
T ss_pred CCCCcCCEEEEEECCHHHHHH
Confidence 345789999999996665554
No 254
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.26 E-value=2.1 Score=28.12 Aligned_cols=30 Identities=10% Similarity=0.089 Sum_probs=19.2
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcccCCC
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFESLGT 77 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~ 77 (196)
+++++|||||.|.+ ...+..+...++....
T Consensus 63 ~g~~~g~afV~f~~-~~~a~~Ai~~l~g~~~ 92 (115)
T 2cpx_A 63 TGRMRGQAFITFPN-KEIAWQALHLVNGYKL 92 (115)
T ss_dssp CSSSCSEEEEECSS-HHHHHHHHHHSTTCBC
T ss_pred CCccceEEEEEECC-HHHHHHHHHHhCCCEe
Confidence 45789999999995 4444444445555433
No 255
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.24 E-value=2.2 Score=28.65 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=15.6
Q ss_pred CCCCCcCcccccCCCcHHHHH
Q 043064 46 APKKTKGRGFREEADSERHSR 66 (196)
Q Consensus 46 ~~~~~kG~gf~~~~~~~~~~~ 66 (196)
.+++++|||||.|.+.+.+..
T Consensus 62 ~~g~~~G~afV~F~~~~~a~~ 82 (124)
T 1wel_A 62 PNGKATGEGFVEFRNEADYKA 82 (124)
T ss_dssp TTSSEEEEEEEEBSSSHHHHH
T ss_pred CCCCCCeEEEEEECCHHHHHH
Confidence 356789999999996555444
No 256
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=74.16 E-value=0.57 Score=30.91 Aligned_cols=42 Identities=7% Similarity=-0.072 Sum_probs=24.7
Q ss_pred CCCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCC
Q 043064 30 SPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGT 77 (196)
Q Consensus 30 ~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~ 77 (196)
+++..+..+++. ..+++|||||.|.+ ..++..+...+++...
T Consensus 52 G~V~~v~i~~~~-----~~~~~G~~fV~f~~-~~~A~~A~~~lng~~~ 93 (104)
T 1jmt_A 52 GEVEEMNVCDNL-----GDHLVGNVYVKFRR-EEDAEKAVIDLNNRWF 93 (104)
T ss_dssp CCEEEEEECCSS-----SSSSEEEEEEEESC-HHHHHHHHHHHTTCEE
T ss_pred CceEEEEEEeCC-----CCCccEEEEEEECC-HHHHHHHHHHHCCCEE
Confidence 344444444443 34789999999994 4444444455555433
No 257
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=73.93 E-value=0.78 Score=32.64 Aligned_cols=37 Identities=14% Similarity=-0.044 Sum_probs=22.9
Q ss_pred CCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhccc
Q 043064 33 APQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFES 74 (196)
Q Consensus 33 ~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~ 74 (196)
..+..+++. .+++++|||||.|.+ ..++..+...+++
T Consensus 85 ~~v~i~~d~----~tg~skGfaFV~f~~-~~~A~~Ai~~lng 121 (156)
T 3n9u_C 85 VELKFAENR----ANGQSKGYAEVVVAS-ENSVHKLLELLPG 121 (156)
T ss_dssp EEEEEEECT----TTCCEEEEEEEEESC-HHHHHHHHHHSTT
T ss_pred EEEEEEecC----CCCccceEEEEEECC-HHHHHHHHHHcCC
Confidence 344445554 456889999999994 4444444445444
No 258
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.88 E-value=5.3 Score=26.06 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=22.0
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcccCCCCCC
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFESLGTDGG 80 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (196)
.++++|||||.|.+ ...+..+...++.....+.
T Consensus 62 ~g~~~g~afV~f~~-~~~a~~A~~~l~g~~~~~~ 94 (114)
T 1x5o_A 62 SGTSRGVGFARMES-TEKCEAVIGHFNGKFIKTP 94 (114)
T ss_dssp SSCEEEEEEEEESC-HHHHHHHHHHHBTCCCCCC
T ss_pred CCCcceEEEEEECC-HHHHHHHHHHhCCCEEcCC
Confidence 45789999999994 4444445556666655443
No 259
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=73.86 E-value=2.2 Score=27.47 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=19.3
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcccCCCC
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFESLGTD 78 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~ 78 (196)
+++++|||||.|.+...+.+ +. .+++....
T Consensus 57 ~g~~~g~afV~f~~~~~a~~-Ai-~l~g~~~~ 86 (100)
T 2j76_E 57 PERLKGFGYAEFEDLDSLLS-AL-SLNEESLG 86 (100)
T ss_dssp TCCCCSCEEEEECCHHHHHH-HH-HTTTCCBT
T ss_pred CCccCeEEEEEECCHHHHHH-HH-hcCCCEEC
Confidence 45789999999995444444 43 45554433
No 260
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=72.90 E-value=2.5 Score=28.14 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=23.2
Q ss_pred CCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccC
Q 043064 31 PRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESL 75 (196)
Q Consensus 31 ~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~ 75 (196)
.+..+..+++. +++++|||||.|.+ ..++..+...++..
T Consensus 33 ~i~~v~i~~~~-----~g~~~g~afV~F~~-~~~A~~Ai~~l~g~ 71 (116)
T 2fy1_A 33 PISEVLLIKDR-----TSKSRGFAFITFEN-PADAKNAAKDMNGK 71 (116)
T ss_dssp CCSEEEEECST-----TTTCCCEEEEECSS-HHHHHHHHHHCSSC
T ss_pred CEEEEEEEECC-----CCCcccEEEEEECC-HHHHHHHHHHhCCC
Confidence 33444444443 45789999999995 44444444445443
No 261
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=72.46 E-value=1.2 Score=29.43 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=19.5
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcccCCC
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFESLGT 77 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~ 77 (196)
+++++|||||.|.+ ...+..+...+++...
T Consensus 64 ~g~~~g~afV~F~~-~~~A~~Ai~~l~g~~i 93 (108)
T 2jrs_A 64 TGRSKGYGFITFSD-SECAKKALEQLNGFEL 93 (108)
T ss_dssp TTEEEEEEEEEESC-HHHHHHHHHHHTTCCS
T ss_pred CCccceEEEEEECC-HHHHHHHHHHcCCCEE
Confidence 45789999999995 4444444455555443
No 262
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=72.41 E-value=1.1 Score=29.18 Aligned_cols=28 Identities=32% Similarity=0.260 Sum_probs=18.4
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcccC
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFESL 75 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~~ 75 (196)
+++++|||||.|.+...+.. +...+++.
T Consensus 57 ~g~~~G~afV~f~~~~~A~~-Ai~~l~g~ 84 (105)
T 2nlw_A 57 DGKTKGYIFLEYASPAHAVD-AVKNADGY 84 (105)
T ss_dssp TTBSCCEEEEEECSSSHHHH-HHHHCSSE
T ss_pred CCCeeeEEEEEECCHHHHHH-HHHHhCCc
Confidence 45789999999995554443 43445443
No 263
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=72.25 E-value=1.3 Score=28.19 Aligned_cols=28 Identities=36% Similarity=0.385 Sum_probs=18.1
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcccC
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFESL 75 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~~ 75 (196)
+++++|||||.|.+... +..+...+++.
T Consensus 40 ~g~~~g~afV~f~~~~~-A~~Ai~~l~g~ 67 (96)
T 2x1f_A 40 TGRSKGYAFIEFRDLES-SASAVRNLNGY 67 (96)
T ss_dssp TCCBCSEEEEEESSHHH-HHHHHHHHTTC
T ss_pred CCccceEEEEEECCHHH-HHHHHHHhCCC
Confidence 45789999999995444 44344445443
No 264
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.01 E-value=1.8 Score=27.66 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=15.1
Q ss_pred CCCCCcCcccccCCCcHHHHH
Q 043064 46 APKKTKGRGFREEADSERHSR 66 (196)
Q Consensus 46 ~~~~~kG~gf~~~~~~~~~~~ 66 (196)
.+.+++||+||.|.+...+..
T Consensus 47 ~~~~~~g~afV~f~~~~~a~~ 67 (99)
T 2dgs_A 47 EKQRPRGFGFITFEDEQSVDQ 67 (99)
T ss_dssp TTCSCCSEEEEEESSHHHHHH
T ss_pred CCCCCCceEEEEECCHHHHHH
Confidence 345789999999995444444
No 265
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=71.99 E-value=1.8 Score=27.60 Aligned_cols=38 Identities=11% Similarity=0.029 Sum_probs=22.3
Q ss_pred CCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhccc
Q 043064 32 RAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFES 74 (196)
Q Consensus 32 ~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~ 74 (196)
+..+..+++. .+.+++||+||.|.+.+ .+..+...++.
T Consensus 42 v~~~~~~~~~----~~g~~~g~afV~f~~~~-~a~~Ai~~l~g 79 (98)
T 2cqp_A 42 IPGSVCLKYN----EKGMPTGEAMVAFESRD-EATAAVIDLND 79 (98)
T ss_dssp CTTTCEEEEC----SSSCEEEEEEEEESCHH-HHHHHHHHTTT
T ss_pred ccceEEEEEC----CCCCeeeEEEEEECCHH-HHHHHHHHhCC
Confidence 3334444443 35578999999999544 44444444444
No 266
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=71.96 E-value=1.2 Score=28.98 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=19.1
Q ss_pred CCCCCcCcccccCCCcHHHHHHhhhhcccCC
Q 043064 46 APKKTKGRGFREEADSERHSRLADRNFESLG 76 (196)
Q Consensus 46 ~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~ 76 (196)
.+++++|||||.|.+... +..+...+++..
T Consensus 60 ~~~~~~g~afV~f~~~~~-a~~A~~~l~g~~ 89 (106)
T 1p27_B 60 RTGYLKGYTLVEYETYKE-AQAAMEGLNGQD 89 (106)
T ss_dssp TTSSEEEEEEEEESCHHH-HHHHHHHHTTCB
T ss_pred CCCceeeEEEEEECCHHH-HHHHHHHhcCCE
Confidence 346789999999995444 444444455443
No 267
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.83 E-value=1.4 Score=28.47 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=19.2
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcccCCC
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFESLGT 77 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~ 77 (196)
+.+++||+||.|.+.+.+.. +...++....
T Consensus 51 ~~~~~g~afV~f~~~~~A~~-A~~~l~g~~~ 80 (103)
T 2dnm_A 51 TKAPRGFAFVRFHDRRDAQD-AEAAMDGAEL 80 (103)
T ss_dssp SCSBCSCEEEEESSSSHHHH-HHHHHSSCCB
T ss_pred CCCCCeEEEEEECCHHHHHH-HHHHcCCCEE
Confidence 45789999999995544443 4344554433
No 268
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.53 E-value=3 Score=27.03 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=15.3
Q ss_pred CCCCCcCcccccCCCcHHHHH
Q 043064 46 APKKTKGRGFREEADSERHSR 66 (196)
Q Consensus 46 ~~~~~kG~gf~~~~~~~~~~~ 66 (196)
.+++++|||||.|.+.+.+..
T Consensus 52 ~~g~~~G~afV~F~~~~~a~~ 72 (104)
T 1wg5_A 52 FQGRSTGEAFVQFASQEIAEK 72 (104)
T ss_dssp SSSCBCSEEEEEESSHHHHHH
T ss_pred CCCCcceEEEEEECCHHHHHH
Confidence 356889999999995444444
No 269
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=71.31 E-value=1.4 Score=29.11 Aligned_cols=44 Identities=5% Similarity=-0.079 Sum_probs=24.9
Q ss_pred CCCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccC
Q 043064 30 SPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESL 75 (196)
Q Consensus 30 ~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~ 75 (196)
+++..+..+++..++ ..++++|||||.|.+ ..++..+...++..
T Consensus 43 G~i~~v~i~~~~~~~-~~~~~~G~afV~f~~-~~~A~~Ai~~lng~ 86 (111)
T 2cpi_A 43 GKIHKVVINNSTSYA-GSQGPSASAYVTYIR-SEDALRAIQCVNNV 86 (111)
T ss_dssp SCEEEEEEECCSSCC-SSSCCCEEEEEEESS-HHHHHHHHHHHTTE
T ss_pred CCEEEEEEecCCCcC-ccCCCCeEEEEEECc-HHHHHHHHHHhCCC
Confidence 444444444544222 345778999999995 44444444455443
No 270
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=71.19 E-value=2 Score=28.77 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=17.7
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhccc
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFES 74 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~ 74 (196)
+++++||+||.|.+. ..+..+...++.
T Consensus 60 ~~~~~g~afV~f~~~-~~a~~A~~~l~g 86 (126)
T 3ex7_B 60 TGYLKGYTLVEYETY-KEAQAAMEGLNG 86 (126)
T ss_dssp TSSBCSCEEEEESSH-HHHHHHHHHHTT
T ss_pred CCccceEEEEEECCH-HHHHHHHHHhCC
Confidence 567899999999954 444444444444
No 271
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=70.75 E-value=1.7 Score=27.78 Aligned_cols=27 Identities=30% Similarity=0.244 Sum_probs=17.9
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhccc
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFES 74 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~ 74 (196)
+++++||+||.|.+.+ .+..+...++.
T Consensus 46 ~~~~~g~afV~f~~~~-~a~~A~~~l~g 72 (99)
T 1whw_A 46 TKKPKGFAFVTFMFPE-HAVKAYAEVDG 72 (99)
T ss_dssp TCCCCSEEEEEESSHH-HHHHHHHHTTT
T ss_pred CCCcCeEEEEEECCHH-HHHHHHHHhCC
Confidence 5678999999999544 44444444444
No 272
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=70.14 E-value=1.1 Score=33.97 Aligned_cols=28 Identities=11% Similarity=0.042 Sum_probs=18.3
Q ss_pred CCCCCcCcccccCCCcHHHHHHhhhhccc
Q 043064 46 APKKTKGRGFREEADSERHSRLADRNFES 74 (196)
Q Consensus 46 ~~~~~kG~gf~~~~~~~~~~~~~~~~~~~ 74 (196)
.+.+++|||||.|.+...+ ..+...++.
T Consensus 107 ~tg~skGfaFV~f~~~~~a-~~Ai~~lng 134 (229)
T 3q2s_C 107 ANGQSKGFALVGVGSEASS-KKLMDLLPK 134 (229)
T ss_dssp TTCCEEEEEEEEESCTTHH-HHHHTTSTT
T ss_pred CCCccceEEEEEECCHHHH-HHHHHHcCC
Confidence 3568899999999954444 434344444
No 273
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=70.04 E-value=1.7 Score=29.03 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=17.4
Q ss_pred CCcCcccccCCCcHHHHHHhhhhcccC
Q 043064 49 KTKGRGFREEADSERHSRLADRNFESL 75 (196)
Q Consensus 49 ~~kG~gf~~~~~~~~~~~~~~~~~~~~ 75 (196)
+++|||||.|.+ ..++..+...+++.
T Consensus 65 ~~rGfaFV~F~~-~e~A~~Ai~~lng~ 90 (111)
T 2jvr_A 65 DFDGTGALEFPS-EEILVEALERLNNI 90 (111)
T ss_dssp SSSCCEEEEESS-HHHHHHHHHHTTTE
T ss_pred CCCCEEEEEECC-HHHHHHHHHHcCCC
Confidence 588999999994 44454444455543
No 274
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.67 E-value=3.5 Score=26.16 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=18.5
Q ss_pred CCcCcccccCCCcHHHHHHhhhhcccCCC
Q 043064 49 KTKGRGFREEADSERHSRLADRNFESLGT 77 (196)
Q Consensus 49 ~~kG~gf~~~~~~~~~~~~~~~~~~~~~~ 77 (196)
+++||+||.|.+ ...+..+...++....
T Consensus 54 ~~~g~afV~f~~-~~~a~~A~~~l~g~~~ 81 (97)
T 2e5j_A 54 GPRRRAFLHYPD-SAAAQQAVSCLQGLRL 81 (97)
T ss_dssp TTTTEEEEECSS-HHHHHHHHHHHTTCCS
T ss_pred CCCcEEEEEECC-HHHHHHHHHHhCCCEE
Confidence 678999999994 4444444455555444
No 275
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=69.66 E-value=2.4 Score=27.14 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=19.4
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcccCCCC
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFESLGTD 78 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~ 78 (196)
+++++|||||.|.+...+.. +.. ++.....
T Consensus 54 ~g~~~g~afV~f~~~~~a~~-A~~-l~g~~~~ 83 (101)
T 1fj7_A 54 TGTNRKFGYVDFESAEDLEK-ALE-LTGLKVF 83 (101)
T ss_dssp EETTTTEEEEEESSHHHHHH-HHH-GGGCCBT
T ss_pred CCCcCcEEEEEECCHHHHHH-HHh-cCCcEEC
Confidence 34789999999995444444 434 6655443
No 276
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=69.28 E-value=1.9 Score=28.42 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=17.8
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhccc
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFES 74 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~ 74 (196)
+.+++||+||.|.+.+. +..+...++.
T Consensus 63 ~g~~~g~afV~f~~~~~-a~~A~~~l~g 89 (115)
T 2cpz_A 63 TNLSKCFGFVSYDNPVS-AQAAIQSMNG 89 (115)
T ss_dssp SCSEEEEEEEECSSHHH-HHHHHHHHTT
T ss_pred CCCcCccEEEEECCHHH-HHHHHHHcCC
Confidence 56789999999995444 4434444444
No 277
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.24 E-value=3.3 Score=26.83 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=17.2
Q ss_pred CCCCCcCcccccCCCcHHHHHHhhhhc
Q 043064 46 APKKTKGRGFREEADSERHSRLADRNF 72 (196)
Q Consensus 46 ~~~~~kG~gf~~~~~~~~~~~~~~~~~ 72 (196)
.+++++||+||.|.+ ...+..+...+
T Consensus 47 ~~g~~~g~afV~f~~-~~~A~~A~~~l 72 (109)
T 2dis_A 47 DKMKNRGFAFVEYES-HRAAAMARRKL 72 (109)
T ss_dssp TTTTTCCEEEEEESS-HHHHHHHHTTT
T ss_pred CCCCcCcEEEEEecC-HHHHHHHHHHh
Confidence 345789999999995 44444444444
No 278
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=68.22 E-value=13 Score=22.53 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=40.7
Q ss_pred EEEEcC-CCccCcHHHHHHhhccCCC-----eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcEeEEE
Q 043064 91 IILVTG-VHEEAQEDDLQNVFGEYGE-----IRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVD 164 (196)
Q Consensus 91 ~l~V~n-Lp~~~te~~L~~~F~~~G~-----i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~l~g~~l~v~ 164 (196)
++||.. --..+...+|..++..-+. |-.+.+. ..|.||+-.. ..+..++..|++..+.|+.+.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 455531 1224566677777765433 4455554 2378888874 56788888999999999999988
Q ss_pred Ecc
Q 043064 165 WAF 167 (196)
Q Consensus 165 ~a~ 167 (196)
.+.
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 763
No 279
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=67.91 E-value=2 Score=28.02 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=17.2
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcc
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFE 73 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~ 73 (196)
+++++||+||.|.+... +..+...++
T Consensus 53 ~g~~~g~afV~f~~~~~-A~~A~~~~~ 78 (111)
T 1x4h_A 53 TEHSKGCAFAQFMTQEA-AQKCLAAAS 78 (111)
T ss_dssp SCCBCSEEEEEESSHHH-HHHHHHHHC
T ss_pred CCCCccEEEEEECCHHH-HHHHHHHhc
Confidence 45789999999995444 443444444
No 280
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.91 E-value=4.2 Score=26.52 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=18.7
Q ss_pred CCCCCcCcccccCCCcHHHHHHhhhhcccC
Q 043064 46 APKKTKGRGFREEADSERHSRLADRNFESL 75 (196)
Q Consensus 46 ~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~ 75 (196)
.+.+++||+||.|.+.+ .+..+...++..
T Consensus 60 ~~g~~~g~afV~f~~~~-~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 60 ETGKPKGDATVSYEDPP-TAKAAVEWFDGK 88 (113)
T ss_dssp TTCSBCSEEEEEBSSHH-HHHHHHHHHTTC
T ss_pred CCCCeeeEEEEEECCHH-HHHHHHHHcCCC
Confidence 34578999999999544 444444444443
No 281
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=67.82 E-value=3.2 Score=26.76 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=18.8
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhc-ccCC
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNF-ESLG 76 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~-~~~~ 76 (196)
..+++||+||.|.+.+ .+..+...+ +...
T Consensus 54 ~~~~~g~afV~f~~~~-~a~~A~~~l~~~~~ 83 (107)
T 2cph_A 54 TGAHRGFGFVDFITKQ-DAKKAFNALCHSTH 83 (107)
T ss_dssp SCSSCSEEEEEESSHH-HHHHHHHHHHTCCB
T ss_pred CCCcCceEEEEECCHH-HHHHHHHHhccCCe
Confidence 5578999999999544 444444455 4443
No 282
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.80 E-value=4.5 Score=25.87 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=18.7
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcccCC
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFESLG 76 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~ 76 (196)
+++++|||||.|.+.+ .+..+...++...
T Consensus 47 ~g~~~g~afV~f~~~~-~a~~A~~~l~g~~ 75 (104)
T 2dhg_A 47 TGVSKGYGFVKFTDEL-EQKRALTECQGAV 75 (104)
T ss_dssp TCCEEEEEEEEESCHH-HHHHHHHHTTTCC
T ss_pred CCCccceEEEEECCHH-HHHHHHHHccCCc
Confidence 4468999999999544 4444444555443
No 283
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=67.74 E-value=1.9 Score=28.14 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=18.4
Q ss_pred CCCCCcCcccccCCCcHHHHHHhhhhcccC
Q 043064 46 APKKTKGRGFREEADSERHSRLADRNFESL 75 (196)
Q Consensus 46 ~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~ 75 (196)
.+++++|||||.|.+... +..+...+++.
T Consensus 63 ~~~~~~g~afV~f~~~~~-A~~Ai~~l~g~ 91 (110)
T 1oo0_B 63 RTGFSKGYALVEYETHKQ-ALAAKEALNGA 91 (110)
T ss_dssp TTSSBCSEEEEEESSHHH-HHHHHHHHTTC
T ss_pred CCCCcceEEEEEECCHHH-HHHHHHHcCCC
Confidence 356789999999995444 44344444443
No 284
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=66.88 E-value=0.34 Score=32.97 Aligned_cols=48 Identities=6% Similarity=-0.148 Sum_probs=29.2
Q ss_pred CCCCCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCC
Q 043064 28 SSSPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLG 76 (196)
Q Consensus 28 ~~~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~ 76 (196)
..+++..+..+++..+...+.+++|++||.|.+.+ .+..+...+++..
T Consensus 48 k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e-~A~~Ai~~LnGr~ 95 (118)
T 3ue2_A 48 KFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIAS-ETHKAIQALNGRW 95 (118)
T ss_dssp TTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHH-HHHHHHHHHTTCE
T ss_pred ccCCEeEEEEeecCCCcccCCcceEEEEEEECCHH-HHHHHHHHHCCCE
Confidence 34555666666665332234567899999999544 4444555666543
No 285
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=66.81 E-value=0.7 Score=34.58 Aligned_cols=50 Identities=8% Similarity=-0.126 Sum_probs=31.3
Q ss_pred CCCCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCCCCC
Q 043064 29 SSPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLGTDG 79 (196)
Q Consensus 29 ~~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~~~ 79 (196)
-+.+..+...+..-++..+.+++|++||.|.+ ...+..+...+++....+
T Consensus 153 ~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~-~~~a~~a~~~l~gr~~~g 202 (222)
T 3dxb_A 153 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSI-ASETHKAIQALNGRWFAG 202 (222)
T ss_dssp TSCEEEEEEEEEECCSSTTCCEEEEEEEEESS-HHHHHHHHHHHTTCBSSS
T ss_pred cCCeEEEEEecCCCCcccCcCceeEEEEEECC-HHHHHHHHHHhcCceECC
Confidence 34445555555554444566899999999994 444444556666655443
No 286
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=66.27 E-value=2.1 Score=28.18 Aligned_cols=43 Identities=16% Similarity=-0.028 Sum_probs=24.5
Q ss_pred CCCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCC
Q 043064 30 SPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLG 76 (196)
Q Consensus 30 ~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~ 76 (196)
+.+..+..+++.- .+.+++|++||.|.+.+. +..+...+++..
T Consensus 38 G~V~~v~i~~~~~---~~~~~~G~~FV~f~~~~~-A~~Ai~~lnG~~ 80 (105)
T 2pe8_A 38 GKVGKCVIFEIPG---APDDEAVRIFLEFERVES-AIKAVVDLNGRY 80 (105)
T ss_dssp SCEEEEEEEECSS---CCTTTSEEEEEEESSHHH-HHHHHHHHTTCE
T ss_pred CCEEEEEEecCCC---CCCCCcEEEEEEECCHHH-HHHHHHHHCCCE
Confidence 3444454444421 124689999999995444 444445555543
No 287
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=65.22 E-value=5.3 Score=27.72 Aligned_cols=22 Identities=18% Similarity=0.042 Sum_probs=15.5
Q ss_pred CCCCcCcccccCCCcHHHHHHhh
Q 043064 47 PKKTKGRGFREEADSERHSRLAD 69 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~ 69 (196)
..+++||+||+|.+ ..++..+.
T Consensus 82 ~g~srGfaFV~F~~-~e~A~~Al 103 (139)
T 2hgn_A 82 DGRVTGEADVEFAT-HEEAVAAM 103 (139)
T ss_dssp SSCSSCCCEEECSH-HHHHHHHT
T ss_pred CCCCceEEEEEeCC-HHHHHHHH
Confidence 36889999999994 44444343
No 288
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=65.07 E-value=25 Score=22.62 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=49.8
Q ss_pred CCCEEEEcCCCccCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCc-------eeCCcE
Q 043064 88 EGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGG-------ELLTQT 160 (196)
Q Consensus 88 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~-------~l~g~~ 160 (196)
..+-|-|-|+|..+-..++.-.....|---.|..+ -|.|.|.|.+..+...|+..|-++ .|.|+.
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqi 82 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQI 82 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEccee
Confidence 45778889999999888777666666655556554 356899999999999999876322 245666
Q ss_pred eEEE
Q 043064 161 LTVD 164 (196)
Q Consensus 161 l~v~ 164 (196)
+.|-
T Consensus 83 cdvi 86 (129)
T 4eyt_A 83 CDVI 86 (129)
T ss_dssp EEEE
T ss_pred eeee
Confidence 6554
No 289
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=63.31 E-value=2 Score=29.23 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=17.5
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhccc
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFES 74 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~ 74 (196)
+++++||+||.|.+... +..+...++.
T Consensus 101 ~~~~~g~afV~f~~~~~-a~~A~~~l~g 127 (140)
T 2ku7_A 101 TEKHRGFAFVEFELAED-AAAAIDNMNE 127 (140)
T ss_dssp TCCCCSEEEEEESCHHH-HHHHHHHSTE
T ss_pred CCCcCcEEEEEECCHHH-HHHHHHHhCC
Confidence 45789999999995444 4434444443
No 290
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.30 E-value=4.6 Score=26.53 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=20.0
Q ss_pred CCCCcccccccccCCCCCCCcCcccccCCCcHHHHH
Q 043064 31 PRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSR 66 (196)
Q Consensus 31 ~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~ 66 (196)
.+..+..+++. .+++++||+||.|.+...+..
T Consensus 53 ~i~~v~i~~~~----~~g~~~g~afV~f~~~~~a~~ 84 (116)
T 1x4b_A 53 KLTDCVVMRDP----ASKRSRGFGFVTFSSMAEVDA 84 (116)
T ss_dssp CCSEEEEECCT----TTSSCCSEEEEECSSHHHHHH
T ss_pred CEEEEEEEECC----CCCCcCceEEEEeCCHHHHHH
Confidence 33444444443 345789999999995544444
No 291
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=61.85 E-value=4.9 Score=26.97 Aligned_cols=27 Identities=7% Similarity=0.025 Sum_probs=17.5
Q ss_pred CCcCcccccCCCcHHHHHHhhhhcccCC
Q 043064 49 KTKGRGFREEADSERHSRLADRNFESLG 76 (196)
Q Consensus 49 ~~kG~gf~~~~~~~~~~~~~~~~~~~~~ 76 (196)
+++|||||.|.+ ...+..+...++...
T Consensus 71 ~~kg~aFV~f~~-~~~A~~Ai~~lng~~ 97 (121)
T 2bz2_A 71 PPRNCAFVTYEK-MESADQAVAELNGTQ 97 (121)
T ss_dssp TTTTEEEEECSS-HHHHHHHHHHHTTCB
T ss_pred CCCCEEEEEECC-HHHHHHHHHHhCCCE
Confidence 578999999994 444444444555443
No 292
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=61.50 E-value=1.8 Score=29.63 Aligned_cols=27 Identities=15% Similarity=0.318 Sum_probs=17.6
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhccc
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFES 74 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~ 74 (196)
+++++|||||.|.+.+. +..+...++.
T Consensus 80 ~~~~~g~afV~f~~~~~-a~~A~~~l~g 106 (139)
T 1u6f_A 80 TRQSRGYGFVKFQSGSS-AQQAIAGLNG 106 (139)
T ss_dssp TTEEEEEEEEEESSHHH-HHHHHHHTTT
T ss_pred CCCcceEEEEEECCHHH-HHHHHHHhCC
Confidence 45789999999995444 4434444444
No 293
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=61.09 E-value=2.5 Score=27.75 Aligned_cols=44 Identities=9% Similarity=-0.091 Sum_probs=25.4
Q ss_pred CCCCCcccccccccCCCCCCCcCcccccCCCcHHHHHHhhhhcccCC
Q 043064 30 SPRAPQPKLKSAITGGAPKKTKGRGFREEADSERHSRLADRNFESLG 76 (196)
Q Consensus 30 ~~~~~~~~~r~~~~gg~~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~ 76 (196)
+++..+..+++.-+ ...+++|++||.|.+. .++..+...+++..
T Consensus 40 G~V~~v~i~~~~~~--~~~~~~G~~fV~f~~~-~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 40 GLVKSIEIPRPVDG--VEVPGCGKIFVEFTSV-FDCQKAMQGLTGRK 83 (105)
T ss_dssp SCEEEEECCCCBTT--BCCTTTTEEEEEESSH-HHHHHHHHHHTTCE
T ss_pred CCEEEEEEeccCCC--CCcCCcEEEEEEECCH-HHHHHHHHHhCCCE
Confidence 44445544444311 2346899999999954 44444555666543
No 294
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=60.77 E-value=3.9 Score=34.14 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=19.2
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcccCC
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFESLG 76 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~ 76 (196)
+.+++|||||.|.+ ...+..+...++...
T Consensus 140 tg~~kG~aFV~F~~-~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 140 SGKPRGYAFIEYEH-ERDMHSAYKHADGKK 168 (437)
T ss_pred CCCccceEEEeecc-HHHHHHHHHHcCCCE
Confidence 55789999999994 444444444555543
No 295
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=59.28 E-value=4.4 Score=27.00 Aligned_cols=28 Identities=7% Similarity=0.077 Sum_probs=18.0
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcccC
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFESL 75 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~~ 75 (196)
.++++|||||.|.+.+ .+..+...++..
T Consensus 72 ~g~~~g~afV~f~~~~-~A~~Ai~~l~g~ 99 (124)
T 2kt5_A 72 SGRSLGTADVHFERRA-DALKAMKQYKGV 99 (124)
T ss_dssp SSSCCSEEEEEESSHH-HHHHHHHHHTTE
T ss_pred CCCEeeEEEEEECCHH-HHHHHHHHcCCC
Confidence 4568999999999544 444444445443
No 296
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=55.19 E-value=3.7 Score=28.19 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=18.0
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcccC
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFESL 75 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~~ 75 (196)
+++++|||||.|.+.. .+..+...+++.
T Consensus 88 ~g~~~g~afV~f~~~~-~A~~Ai~~lng~ 115 (143)
T 3egn_A 88 EGRMKGQAFIGLPNEK-AAAKALKEANGY 115 (143)
T ss_dssp ETTTEEEEEEECSSHH-HHHHHHHHHTTB
T ss_pred CCCcccEEEEEeCCHH-HHHHHHHHhCCC
Confidence 3578999999999544 444344445543
No 297
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=55.06 E-value=2.8 Score=29.74 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=17.7
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhccc
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFES 74 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~ 74 (196)
+++++|||||.|.+ ...+..+...++.
T Consensus 110 ~g~~~g~afV~f~~-~~~A~~Ai~~l~g 136 (165)
T 1rk8_A 110 TGFSKGYALVEYET-HKQALAAKEALNG 136 (165)
T ss_dssp TSSEEEEEEEEESS-HHHHHHHHHHHTT
T ss_pred CCcEeeEEEEEECC-HHHHHHHHHHhCC
Confidence 55678999999994 4444444444444
No 298
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=54.68 E-value=34 Score=24.70 Aligned_cols=57 Identities=16% Similarity=0.318 Sum_probs=37.3
Q ss_pred CEEEEcCCCcc---------CcHHHHHHhh--ccCCCeeEEEEeecCCCCCcceEEEEEecC-HHHHHHHHH
Q 043064 90 WIILVTGVHEE---------AQEDDLQNVF--GEYGEIRNLHLNLDRRTGFVKGYALIEYEN-FEEAQNAIT 149 (196)
Q Consensus 90 ~~l~V~nLp~~---------~te~~L~~~F--~~~G~i~~v~i~~~~~~g~~~g~afv~f~~-~~~a~~al~ 149 (196)
.++.|.|+|.. .+...|.+.| +.|.++.-..+ .. ...+.|++.|.|.+ ..-...|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l-~~--~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPL-WN--YLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEE-EC--SSBEEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEec-cc--CCCCceeEEEEecCChHHHHHHHH
Confidence 34667788761 3457899977 99988654433 33 23357899999984 455555553
No 299
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=54.27 E-value=3 Score=29.14 Aligned_cols=20 Identities=20% Similarity=0.091 Sum_probs=14.4
Q ss_pred CCCCcCcccccCCCcHHHHH
Q 043064 47 PKKTKGRGFREEADSERHSR 66 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~ 66 (196)
+.+++||+||.|.+.+.+..
T Consensus 77 ~~~~~g~afV~f~~~~~A~~ 96 (156)
T 1h2v_Z 77 KKTACGFCFVEYYSRADAEN 96 (156)
T ss_dssp TCCEEEEEEEEESSHHHHHH
T ss_pred CCccceEEEEEECCHHHHHH
Confidence 45788999999995444433
No 300
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=53.79 E-value=7.9 Score=27.84 Aligned_cols=30 Identities=7% Similarity=0.040 Sum_probs=19.5
Q ss_pred CCCCcCcccccCCCcHHHHHHhhhhcccCCC
Q 043064 47 PKKTKGRGFREEADSERHSRLADRNFESLGT 77 (196)
Q Consensus 47 ~~~~kG~gf~~~~~~~~~~~~~~~~~~~~~~ 77 (196)
+++++||+||.|.+ ..++..+...++....
T Consensus 125 ~g~~kG~afV~F~~-~~~A~~Ai~~lng~~l 154 (177)
T 2f3j_A 125 SGRSLGTADVHFER-RADALKAMKQYKGVPL 154 (177)
T ss_dssp TSSCSCCEEEEESC-HHHHHHHHHHSTTCBC
T ss_pred CCCEeeEEEEEeCC-HHHHHHHHHHhCCCEE
Confidence 45789999999994 4444444455555433
No 301
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=35.33 E-value=15 Score=29.63 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=17.1
Q ss_pred CcCcccccCCCcHHHHHHhhhhcccC
Q 043064 50 TKGRGFREEADSERHSRLADRNFESL 75 (196)
Q Consensus 50 ~kG~gf~~~~~~~~~~~~~~~~~~~~ 75 (196)
+||||||+|.+ ..++..+...+++.
T Consensus 55 ~kgfaFV~f~~-~~~A~~Ai~~lnG~ 79 (345)
T 3tht_A 55 NKPYSFARYRT-TEESKRAYVTLNGK 79 (345)
T ss_dssp TCSEEEEEESS-HHHHHHHHHHTTTC
T ss_pred CCCEEEEEECC-HHHHHHHHHHhCCC
Confidence 67999999994 44455455555554
No 302
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=28.74 E-value=1e+02 Score=20.17 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=26.7
Q ss_pred CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCce
Q 043064 115 EIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGE 155 (196)
Q Consensus 115 ~i~~v~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~ 155 (196)
.|.++..+.+ .+||.||+=.+..+...|+..+.+..
T Consensus 40 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecCC-----CceEEEEEeCCHHHHHHHHhccccee
Confidence 3666655433 38999999999999999997665543
No 303
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=24.36 E-value=53 Score=25.37 Aligned_cols=33 Identities=6% Similarity=0.003 Sum_probs=25.2
Q ss_pred CEEEEcCCCccCcHHHHHHhhccCCCeeEEEEe
Q 043064 90 WIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLN 122 (196)
Q Consensus 90 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~ 122 (196)
..+.|+|||..++..-|..++.....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 457899999999999999999765455554443
No 304
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=21.88 E-value=17 Score=25.45 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=13.3
Q ss_pred HHHHhhccCCCeeEEEEeecCCCCCcceEEEEEec
Q 043064 105 DLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYE 139 (196)
Q Consensus 105 ~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afv~f~ 139 (196)
++..+|...|.|+. .... +||+||.-.
T Consensus 3 ~~~~l~~~~G~Vkw---fn~~-----kGfGFI~~~ 29 (148)
T 3ts2_A 3 DEPQLLHGAGICKW---FNVR-----MGFGFLSMT 29 (148)
T ss_dssp ---CCEEEEEEEEE---EETT-----TTEEEEEEE
T ss_pred cccccccceeEEEE---EECC-----CCeeEEeeC
Confidence 44455655565433 2221 678888754
No 305
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=20.06 E-value=1.6e+02 Score=21.65 Aligned_cols=26 Identities=12% Similarity=-0.032 Sum_probs=22.4
Q ss_pred cceEEEEEecCHHHHHHHHHHhCCce
Q 043064 130 VKGYALIEYENFEEAQNAITAMNGGE 155 (196)
Q Consensus 130 ~~g~afv~f~~~~~a~~al~~l~~~~ 155 (196)
.+||.||+=.+......||..+.+..
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy 173 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIY 173 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhh
Confidence 48999999999999999998777653
Done!