BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043065
(89 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GPH|1 Chain 1, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|2 Chain 2, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|3 Chain 3, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|4 Chain 4, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
Length = 465
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGR 72
SSDT V+ HLI S +I + L+GAY+ + +TE +++ DP G PL +G
Sbjct: 125 SSDTEVLAHLIKRSGHFTLKDQIKNSLSMLKGAYAFLIMTETEMIVALDPNGLRPLSIGM 184
Query: 73 RSNGALVFASETCALFD 89
+ A V ASETCA FD
Sbjct: 185 MGD-AYVVASETCA-FD 199
>pdb|1AO0|A Chain A, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|B Chain B, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|C Chain C, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|D Chain D, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
Length = 459
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGR 72
SSDT V+ HLI S +I + L+GAY+ + +TE +++ DP G PL +G
Sbjct: 125 SSDTEVLAHLIKRSGHFTLKDQIKNSLSMLKGAYAFLIMTETEMIVALDPNGLRPLSIGM 184
Query: 73 RSNGALVFASETCALFD 89
+ A V ASETCA FD
Sbjct: 185 MGD-AYVVASETCA-FD 199
>pdb|1ECF|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase
pdb|1ECF|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase
pdb|1ECG|A Chain A, Don Inactivated Escherichia Coli Glutamine
Phosphoribosylpyrophosphate (Prpp) Amidotransferase
pdb|1ECG|B Chain B, Don Inactivated Escherichia Coli Glutamine
Phosphoribosylpyrophosphate (Prpp) Amidotransferase
pdb|1ECB|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|C Chain C, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|D Chain D, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECC|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With Mn-Cprpp And
5-Oxo- Norleucine
pdb|1ECC|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With Mn-Cprpp And
5-Oxo- Norleucine
pdb|1ECJ|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|C Chain C, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|D Chain D, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
Length = 504
Score = 34.3 bits (77), Expect = 0.021, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 42 LEGAYSMV-FVTEDKLVAVRDPYGFMPLVMGRR----SNGALVFASETCAL 87
+ GAY+ V + +VA RDP G PLV+G+R + + ASE+ AL
Sbjct: 163 IRGAYACVAMIIGHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVAL 213
>pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|B Chain B, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|C Chain C, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|D Chain D, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
Length = 553
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 14 SDTVVVLHLIPISKARPFFLRILDVCEKLEG--AYSMVFVTEDKLVAVRDPYGFMPLVMG 71
SD V+L L + P FL + L+G A+++ +D + RD G +PL MG
Sbjct: 97 SDCEVILALY--QEKGPEFL------DDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMG 148
Query: 72 RRSNGALVFASETCAL 87
+G L ASE AL
Sbjct: 149 YDEHGQLYVASEMKAL 164
>pdb|4FCU|A Chain A, 1.9 Angstrom Crystal Structure Of
3-Deoxy-Manno-Octulosonate Cytidylyltransferase (Kdsb)
From Acinetobacter Baumannii Without His- Tag Bound To
The Active Site
Length = 253
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 29 RPFFLRILDVCEKLEGAYSMVFVTEDKLVA 58
RP LR++D +K+EG + T+D+ +A
Sbjct: 26 RPMILRVVDQAKKVEGFDDLCVATDDERIA 55
>pdb|3POL|A Chain A, 2.3 Angstrom Crystal Structure Of
3-deoxy-manno-octulosonate Cytidylyltransferase (kdsb)
From Acinetobacter Baumannii
Length = 276
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 29 RPFFLRILDVCEKLEGAYSMVFVTEDKLVA 58
RP LR++D +K+EG + T+D+ +A
Sbjct: 49 RPMILRVVDQAKKVEGFDDLCVATDDERIA 78
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 2 LKNVQPFVAGYSSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTED 54
+ +V PF A +S+D ++ L P + L+ V + G+ SMV++ ++
Sbjct: 303 VASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDN 355
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 2 LKNVQPFVAGYSSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTED 54
+ +V PF A +S+D ++ L P + L+ V + G+ SMV++ ++
Sbjct: 303 VASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDN 355
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.142 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,438,273
Number of Sequences: 62578
Number of extensions: 81533
Number of successful extensions: 187
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 179
Number of HSP's gapped (non-prelim): 8
length of query: 89
length of database: 14,973,337
effective HSP length: 56
effective length of query: 33
effective length of database: 11,468,969
effective search space: 378475977
effective search space used: 378475977
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)