BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043065
(89 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SI61|ASE1_ARATH Amidophosphoribosyltransferase 1, chloroplastic OS=Arabidopsis
thaliana GN=ASE1 PE=2 SV=1
Length = 566
Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 79/119 (66%), Positives = 83/119 (69%), Gaps = 32/119 (26%)
Query: 1 MLKNVQPFVAGY--------------------------------SSDTVVVLHLIPISKA 28
MLKNVQPFVAGY SSDT VVLHLI ISKA
Sbjct: 171 MLKNVQPFVAGYRFGSIGVAHNGNLVNYKTLRAMLEENGSIFNTSSDTEVVLHLIAISKA 230
Query: 29 RPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87
RPFF+RI+D CEKL+GAYSMVFVTEDKLVAVRDPYGF PLVMGRRSNGA+VFASETCAL
Sbjct: 231 RPFFMRIIDACEKLQGAYSMVFVTEDKLVAVRDPYGFRPLVMGRRSNGAVVFASETCAL 289
>sp|Q9STG9|ASE2_ARATH Amidophosphoribosyltransferase 2, chloroplastic OS=Arabidopsis
thaliana GN=ASE2 PE=1 SV=1
Length = 561
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/119 (65%), Positives = 83/119 (69%), Gaps = 32/119 (26%)
Query: 1 MLKNVQPFVAGY--------------------------------SSDTVVVLHLIPISKA 28
MLKNVQPFVAGY SSDT VVLHLI ISKA
Sbjct: 167 MLKNVQPFVAGYRFGSVGVAHNGNLVNYTKLRADLEENGSIFNTSSDTEVVLHLIAISKA 226
Query: 29 RPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87
RPFF+RI+D CEKL+GAYSMVFVTEDKLVAVRDP+GF PLVMGRRSNGA+VFASETCAL
Sbjct: 227 RPFFMRIVDACEKLQGAYSMVFVTEDKLVAVRDPHGFRPLVMGRRSNGAVVFASETCAL 285
>sp|P52418|PUR1_SOYBN Amidophosphoribosyltransferase, chloroplastic OS=Glycine max
GN=PUR1 PE=2 SV=1
Length = 569
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/120 (57%), Positives = 77/120 (64%), Gaps = 33/120 (27%)
Query: 1 MLKNVQPFVAGY---------------------------------SSDTVVVLHLIPISK 27
MLKNVQPF+A Y +SDT VVLHLI SK
Sbjct: 160 MLKNVQPFLADYRFAAVAVAHNGNFVNYRSLRARLEHNNGSIFNTTSDTEVVLHLIATSK 219
Query: 28 ARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87
RPF LRI+D CE L+GAYS+VFVTEDKLVAVRDP+GF PLVMGRR+NGA+V ASETCAL
Sbjct: 220 HRPFLLRIVDACEHLQGAYSLVFVTEDKLVAVRDPFGFRPLVMGRRTNGAVVLASETCAL 279
>sp|Q9T0J5|ASE3_ARATH Amidophosphoribosyltransferase 3, chloroplastic OS=Arabidopsis
thaliana GN=ASE3 PE=1 SV=1
Length = 532
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/119 (57%), Positives = 76/119 (63%), Gaps = 32/119 (26%)
Query: 1 MLKNVQPFVAG--------------------------------YSSDTVVVLHLIPISKA 28
MLKNVQPF+A SSDT +VLHLI SKA
Sbjct: 156 MLKNVQPFIASCKLGSLAVAHNGNFVNYKQLKTKLEEMGSIFITSSDTELVLHLIAKSKA 215
Query: 29 RPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87
+ F LR++D CEKL GAYSMVFV EDKL+AVRDP+GF PLVMGRRSNGA+VFASETCAL
Sbjct: 216 KTFLLRVIDACEKLRGAYSMVFVFEDKLIAVRDPFGFRPLVMGRRSNGAVVFASETCAL 274
>sp|P52419|PUR1_VIGAC Amidophosphoribosyltransferase, chloroplastic (Fragment) OS=Vigna
aconitifolia GN=PUR1 PE=2 SV=1
Length = 485
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/118 (56%), Positives = 75/118 (63%), Gaps = 33/118 (27%)
Query: 2 LKNVQPFVAGY--------------------------------SSDTVVVLHLIPISKAR 29
L NVQPFVAGY +SDT VVLHLI SK R
Sbjct: 99 LVNVQPFVAGYRFGSVAVAHNGNFVNYRSLRAKLEDNGSIFNTTSDTEVVLHLIATSKHR 158
Query: 30 PFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87
PF LR++D CE L+GAYS+VF+TEDKLVAVRD +GF PLVMGRR NGA+VFASETCAL
Sbjct: 159 PFLLRVVDACENLKGAYSLVFLTEDKLVAVRD-FGFRPLVMGRRKNGAVVFASETCAL 215
>sp|P77935|PUR1_RHIEC Amidophosphoribosyltransferase OS=Rhizobium etli (strain CFN 42 /
ATCC 51251) GN=purF PE=3 SV=2
Length = 496
Score = 73.2 bits (178), Expect = 5e-13, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGR 72
+SDT VVLHLI S+ R +D ++EG YSM+ +T KL+A RDP G PLVMG
Sbjct: 146 TSDTEVVLHLIARSRHASTSDRFIDAIRQMEGGYSMLAMTRTKLIAARDPTGIRPLVMGE 205
Query: 73 RSNGALVFASETCAL 87
+G +F SETCAL
Sbjct: 206 L-DGKPIFCSETCAL 219
>sp|Q8CT30|PUR1_STAES Amidophosphoribosyltransferase OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=purF PE=3 SV=1
Length = 494
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 46/75 (61%)
Query: 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGR 72
SSDT V++HLI SKA F + + ++G ++ +T+D L V DP PLV+G+
Sbjct: 135 SSDTEVIMHLIRRSKAPTFEEALKESLRLIKGGFTFAILTKDALYGVVDPNAIRPLVVGK 194
Query: 73 RSNGALVFASETCAL 87
NGA + ASETCA+
Sbjct: 195 MENGAYILASETCAI 209
>sp|Q5HQA0|PUR1_STAEQ Amidophosphoribosyltransferase OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=purF PE=3 SV=1
Length = 494
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 46/75 (61%)
Query: 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGR 72
SSDT V++HLI SKA F + + ++G ++ +T+D L V DP PLV+G+
Sbjct: 135 SSDTEVIMHLIRRSKAPTFEEALKESLRLIKGGFTFAILTKDALYGVVDPNAIRPLVVGK 194
Query: 73 RSNGALVFASETCAL 87
NGA + ASETCA+
Sbjct: 195 MENGAYILASETCAI 209
>sp|Q6GI14|PUR1_STAAR Amidophosphoribosyltransferase OS=Staphylococcus aureus (strain
MRSA252) GN=purF PE=3 SV=1
Length = 494
Score = 62.8 bits (151), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGR 72
SSDT V++HLI SKA F + + K++G ++ +T+D L DP PLV+G+
Sbjct: 135 SSDTEVIMHLIRRSKAPTFEEALKESLRKIKGGFTFAILTKDALYGAVDPNAIRPLVVGK 194
Query: 73 RSNGALVFASETCAL 87
+G + ASETCA+
Sbjct: 195 MKDGTYILASETCAI 209
>sp|Q8NX91|PUR1_STAAW Amidophosphoribosyltransferase OS=Staphylococcus aureus (strain
MW2) GN=purF PE=3 SV=1
Length = 494
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGR 72
SSDT V++HLI SKA F + + K++G ++ +T+D L DP PLV+G+
Sbjct: 135 SSDTEVIMHLIRRSKAPTFEEALKESLRKVKGGFTFAILTKDALYGAVDPNAIRPLVVGK 194
Query: 73 RSNGALVFASETCAL 87
+G + ASETCA+
Sbjct: 195 MKDGTYILASETCAI 209
>sp|Q6GAE3|PUR1_STAAS Amidophosphoribosyltransferase OS=Staphylococcus aureus (strain
MSSA476) GN=purF PE=3 SV=1
Length = 494
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGR 72
SSDT V++HLI SKA F + + K++G ++ +T+D L DP PLV+G+
Sbjct: 135 SSDTEVIMHLIRRSKAPTFEEALKESLRKVKGGFTFAILTKDALYGAVDPNAIRPLVVGK 194
Query: 73 RSNGALVFASETCAL 87
+G + ASETCA+
Sbjct: 195 MKDGTYILASETCAI 209
>sp|P99164|PUR1_STAAN Amidophosphoribosyltransferase OS=Staphylococcus aureus (strain
N315) GN=purF PE=1 SV=1
Length = 494
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGR 72
SSDT V++HLI SKA F + + K++G ++ +T+D L DP PLV+G+
Sbjct: 135 SSDTEVIMHLIRRSKAPTFEEALKESLRKVKGGFTFAILTKDALYGAVDPNAIRPLVVGK 194
Query: 73 RSNGALVFASETCAL 87
+G + ASETCA+
Sbjct: 195 MKDGTYILASETCAI 209
>sp|P65831|PUR1_STAAM Amidophosphoribosyltransferase OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=purF PE=1 SV=1
Length = 494
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGR 72
SSDT V++HLI SKA F + + K++G ++ +T+D L DP PLV+G+
Sbjct: 135 SSDTEVIMHLIRRSKAPTFEEALKESLRKVKGGFTFAILTKDALYGAVDPNAIRPLVVGK 194
Query: 73 RSNGALVFASETCAL 87
+G + ASETCA+
Sbjct: 195 MKDGTYILASETCAI 209
>sp|Q5HH14|PUR1_STAAC Amidophosphoribosyltransferase OS=Staphylococcus aureus (strain
COL) GN=purF PE=3 SV=1
Length = 494
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGR 72
SSDT V++HLI SKA F + + K++G ++ +T+D L DP PLV+G+
Sbjct: 135 SSDTEVIMHLIRRSKAPTFEEALKESLRKVKGGFTFAILTKDALYGAVDPNAIRPLVVGK 194
Query: 73 RSNGALVFASETCAL 87
+G + ASETCA+
Sbjct: 195 MKDGTYILASETCAI 209
>sp|Q57657|PUR1_METJA Probable amidophosphoribosyltransferase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=purF PE=3 SV=3
Length = 471
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 8 FVAGYSSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMP 67
F + S+ + L + + K I + +KL GAYS++ + D L+AVRDP+GF P
Sbjct: 124 FTSSTDSEVIAQLLVRELLKTSDKIEAIKNTLKKLVGAYSLLIMFNDSLIAVRDPWGFKP 183
Query: 68 LVMGRRSNGALVFASETCAL 87
L +GR + + +SE CAL
Sbjct: 184 LCIGRDESNIYI-SSEDCAL 202
>sp|P00497|PUR1_BACSU Amidophosphoribosyltransferase OS=Bacillus subtilis (strain 168)
GN=purF PE=1 SV=2
Length = 476
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGR 72
SSDT V+ HLI S +I + L+GAY+ + +TE +++ DP G PL +G
Sbjct: 136 SSDTEVLAHLIKRSGHFTLKDQIKNSLSMLKGAYAFLIMTETEMIVALDPNGLRPLSIGM 195
Query: 73 RSNGALVFASETCALFD 89
+ A V ASETCA FD
Sbjct: 196 MGD-AYVVASETCA-FD 210
>sp|P35853|PUR1_LACCA Amidophosphoribosyltransferase (Fragment) OS=Lactobacillus casei
GN=purF PE=3 SV=2
Length = 194
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMG 71
+SDT V++HLI +P+ ++ ++ G ++ V +TE L A DP+GF P+V+G
Sbjct: 136 TSDTEVLMHLIRRQVGQPWLTQLKTALNEVHGGFAFVLLTEHGLYAAVDPHGFRPMVVG 194
>sp|P65829|PUR1_MYCTU Amidophosphoribosyltransferase OS=Mycobacterium tuberculosis
GN=purF PE=3 SV=1
Length = 527
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 36 LDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87
LD+ + GA+ + F+ E+ L A RDPYG PL +GR G +V ASET AL
Sbjct: 189 LDLLPTVRGAFCLTFMDENTLYACRDPYGVRPLSLGRLDRGWVV-ASETAAL 239
>sp|P65830|PUR1_MYCBO Amidophosphoribosyltransferase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=purF PE=3 SV=1
Length = 527
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 36 LDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87
LD+ + GA+ + F+ E+ L A RDPYG PL +GR G +V ASET AL
Sbjct: 189 LDLLPTVRGAFCLTFMDENTLYACRDPYGVRPLSLGRLDRGWVV-ASETAAL 239
>sp|Q55621|PUR1_SYNY3 Amidophosphoribosyltransferase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=purF PE=3 SV=1
Length = 495
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 3 KNVQPFVAGYSSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDP 62
+ + FV S+ + V + K + + + GAYS+V T + ++ VRDP
Sbjct: 146 RGCEDFVTTTDSEMIAVAIANEVDKGKDWVEGTIAALTLCAGAYSLVIGTPEGIIGVRDP 205
Query: 63 YGFMPLVMG--RRSNGALVFASETCAL 87
+G PLV+G V ASETCAL
Sbjct: 206 HGIRPLVIGVLEEETPRYVLASETCAL 232
>sp|O29388|PUR1_ARCFU Probable amidophosphoribosyltransferase OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=purF PE=3 SV=3
Length = 457
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 14 SDTVVVLHLIPISKARPFFLRILDVCEKLE-------GAYSMVFVTEDKLVAVRDPYGFM 66
SDT V+ L+ F + D+ LE G+Y+M + +D ++ RDP GF
Sbjct: 127 SDTEVISQLLS-----KFLIEEGDIINALERLNESLVGSYTMTMLVDDAVIGYRDPLGFK 181
Query: 67 PLVMGRRSNGALVFASETCAL 87
PL +GR +G V SE+CA+
Sbjct: 182 PLCVGRIDDG-YVICSESCAI 201
>sp|Q50028|PUR1_MYCLE Amidophosphoribosyltransferase OS=Mycobacterium leprae (strain TN)
GN=purF PE=3 SV=1
Length = 556
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 36 LDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87
L++ + GA+ + F+ E+ L A RDPYG PL +GR G +V ASET L
Sbjct: 212 LELLPTVRGAFCLTFMDENTLYACRDPYGVRPLSLGRLDRGWVV-ASETAGL 262
>sp|Q9V253|PUR1_PYRAB Amidophosphoribosyltransferase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=purF PE=3 SV=1
Length = 447
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 8 FVAGYSSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMP 67
F + ++ + + L S+ + F + V E+++GAYS++ + + K++A RDP GF P
Sbjct: 126 FHSSVDTEVIGISFLNHYSQVKDEFEAMRRVFEEVKGAYSILILFDGKIIAARDPVGFRP 185
Query: 68 LVMGRRSNGALVFASETCAL 87
LV G FASE AL
Sbjct: 186 LVFG--EGDGYYFASEDSAL 203
>sp|O57979|PUR1_PYRHO Amidophosphoribosyltransferase OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=purF PE=3 SV=1
Length = 449
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 8 FVAGYSSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMP 67
F + ++ + V L S+ + F + V E+++GAYS++ + KL+AVRDP GF P
Sbjct: 126 FRSSIDTEVIAVSFLNHYSELKDEFEAMSRVFEEVKGAYSVLMLFNGKLIAVRDPVGFRP 185
Query: 68 LVMGRRSNGALVFASETCAL 87
L G + F+SE AL
Sbjct: 186 LSFG--AGDGYYFSSEDSAL 203
>sp|O26742|PUR1_METTH Amidophosphoribosyltransferase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=purF PE=3 SV=1
Length = 474
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 13 SSDTVVVLHLIPIS-KARP-FFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVM 70
++D+ V+ HL+ +P I V E+L G+YS+V + L VRDP G PL
Sbjct: 137 TTDSEVICHLLSREYDEKPNMIYSIKRVSEQLVGSYSLVVLLNQDLYVVRDPVGIKPLAF 196
Query: 71 GRRSNGALVFASETCALFD 89
R+ + +V ASET A FD
Sbjct: 197 ARKGSTQIV-ASETVA-FD 213
>sp|Q55038|PUR1_SYNE7 Amidophosphoribosyltransferase OS=Synechococcus elongatus (strain
PCC 7942) GN=purF PE=3 SV=1
Length = 493
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 35 ILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGR-RSNGA--LVFASETCAL 87
I C + +GA+S+ T + L RDP G PLV+G SNG V +SETC L
Sbjct: 175 IESACRRSQGAFSLTIGTPEALYGTRDPNGIRPLVLGTLESNGQTRYVLSSETCGL 230
>sp|P43854|PUR1_HAEIN Amidophosphoribosyltransferase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=purF PE=3 SV=2
Length = 505
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 21 HLIPISKARPFFLRILDVCEKLEGAYS-MVFVTEDKLVAVRDPYGFMPLVMGRR-SNGA- 77
HL P + F + + + GAY+ + + +VA RDP+G PLV+G+R NG
Sbjct: 147 HLDP----QDIFYAVRKTHKDVRGAYACLAMIIGHGMVAFRDPFGIRPLVLGKREENGKT 202
Query: 78 -LVFASETCAL 87
+FASET AL
Sbjct: 203 DYMFASETVAL 213
>sp|P35433|PUR1_RAT Amidophosphoribosyltransferase OS=Rattus norvegicus GN=Ppat PE=1
SV=1
Length = 517
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 13 SSDTVVVLHLIPISKARP------FFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFM 66
SSD+ ++ L+ + + + RI ++ ++ AYS+V + D + AVRDPYG
Sbjct: 145 SSDSEMITQLLAYTPPQEQDDTPDWVARIKNLMKEAPAAYSLVIMHRDVIYAVRDPYGNR 204
Query: 67 PLVMGR 72
PL +GR
Sbjct: 205 PLCIGR 210
>sp|Q06203|PUR1_HUMAN Amidophosphoribosyltransferase OS=Homo sapiens GN=PPAT PE=1 SV=1
Length = 517
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 13 SSDTVVVLHLIPISKARP------FFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFM 66
SSD+ ++ L+ + + + RI ++ ++ AYS++ + D + AVRDPYG
Sbjct: 145 SSDSEMITQLLAYTPPQEQDDTPDWVARIKNLMKEAPTAYSLLIMHRDVIYAVRDPYGNR 204
Query: 67 PLVMGR 72
PL +GR
Sbjct: 205 PLCIGR 210
>sp|Q9L6B8|PUR1_PASMU Amidophosphoribosyltransferase OS=Pasteurella multocida (strain
Pm70) GN=purF PE=3 SV=3
Length = 504
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 40 EKLEGAYSMV-FVTEDKLVAVRDPYGFMPLVMGRR-SNGA--LVFASETCAL 87
+ + GAY+ + + +VA RDP G PLV+G+R NG +FASE+ AL
Sbjct: 162 QDIRGAYACIAMIIGHGMVAFRDPNGIRPLVLGKREENGKTEYMFASESIAL 213
>sp|P28173|PUR1_CHICK Amidophosphoribosyltransferase OS=Gallus gallus GN=PPAT PE=2 SV=1
Length = 510
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 13 SSDTVVVLHLIPIS------KARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFM 66
SSD+ ++ L+ + + RI ++ + +YS++ + +D + AVRDPYG
Sbjct: 145 SSDSELITQLLAFTPPLENDDTADWVARIKNLMNETPTSYSLLIMHKDIIYAVRDPYGNR 204
Query: 67 PLVMGR 72
PL +GR
Sbjct: 205 PLCIGR 210
>sp|P49089|ASNS1_YEAST Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ASN1 PE=1
SV=2
Length = 572
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 30 PFFLR-ILDVCEKLEG--AYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNG--ALVFASET 84
P +L+ +D + L+G A+++ +D++VA RDP G L MGR S + FASE
Sbjct: 103 PMYLKHDIDAPKYLDGMFAWTLYDAKQDRIVAARDPIGITTLYMGRSSASPKTVYFASEL 162
Query: 85 CALFD 89
L D
Sbjct: 163 KCLTD 167
>sp|P49094|ASNS_MAIZE Asparagine synthetase [glutamine-hydrolyzing] OS=Zea mays GN=ASN1
PE=2 SV=2
Length = 586
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 40 EKLEGAYSMVFV-TEDK-LVAVRDPYGFMPLVMGRRSNGALVFASETCALFD 89
+ L+G +S V + T DK +A RD G PL MG +G++ F+SE AL D
Sbjct: 115 DMLDGMFSFVLLDTRDKSFIAARDAIGICPLYMGWGLDGSVWFSSEMKALSD 166
>sp|Q54MB4|ASNS_DICDI Probable asparagine synthetase [glutamine-hydrolyzing]
OS=Dictyostelium discoideum GN=asns PE=1 SV=1
Length = 557
Score = 36.6 bits (83), Expect = 0.053, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 37 DVCEKLEGAYSMVFVTE--DKLVAVRDPYGFMPLVMGRRSNGALVFASETCALFD 89
D L+G ++ V + + +A RDP G +PL +G +G++ F+SE A+ D
Sbjct: 115 DFVHMLDGDFAFVVYNKKANSFLAARDPIGVVPLYIGWHKDGSIWFSSEMKAIKD 169
>sp|P49090|ASNS2_YEAST Asparagine synthetase [glutamine-hydrolyzing] 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ASN2 PE=1
SV=2
Length = 572
Score = 35.8 bits (81), Expect = 0.086, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 30 PFFLR-ILDVCEKLEG--AYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNG--ALVFASET 84
P +L +D + L+G A+ + +D++VA RDP G + L MGR S + FASE
Sbjct: 103 PLYLEHDIDAPKYLDGMFAFCLYDSKKDRIVAARDPIGVVTLYMGRSSQSPETVYFASEL 162
Query: 85 CALFD 89
L D
Sbjct: 163 KCLTD 167
>sp|Q9LFU1|ASNS3_ARATH Asparagine synthetase [glutamine-hydrolyzing] 3 OS=Arabidopsis
thaliana GN=ASN3 PE=2 SV=1
Length = 578
Score = 35.8 bits (81), Expect = 0.089, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 40 EKLEGAYSMVFV-TEDK-LVAVRDPYGFMPLVMGRRSNGALVFASETCALFD 89
+ L+G ++ V + T DK +A RD G PL +G +G++ FASE AL D
Sbjct: 115 DMLDGMFAFVLLDTRDKSFIAARDAIGITPLYIGWGLDGSVWFASEMKALSD 166
>sp|Q9LV77|ASNS2_ARATH Asparagine synthetase [glutamine-hydrolyzing] 2 OS=Arabidopsis
thaliana GN=ASN2 PE=2 SV=1
Length = 578
Score = 35.8 bits (81), Expect = 0.089, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 40 EKLEGAYSMVFV-TEDK-LVAVRDPYGFMPLVMGRRSNGALVFASETCALFD 89
+ L+G ++ V + T DK +A RD G PL +G +G++ FASE AL D
Sbjct: 115 DMLDGMFAFVLLDTRDKSFIAARDAIGITPLYIGWGLDGSVWFASEMKALSD 166
>sp|Q27601|PUR1_DROME Amidophosphoribosyltransferase OS=Drosophila melanogaster GN=Prat
PE=1 SV=2
Length = 546
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 45 AYSMVFVTEDKLVAVRDPYGFMPLVMGR 72
+YS+V + +DK+ AVRD YG PL +G+
Sbjct: 225 SYSLVIMLKDKIYAVRDTYGNRPLCIGK 252
>sp|Q43011|ASNS2_ORYSJ Asparagine synthetase [glutamine-hydrolyzing] 2 OS=Oryza sativa
subsp. japonica GN=Os06g0265000 PE=2 SV=3
Length = 591
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 42 LEGAYSMVFV-TEDK-LVAVRDPYGFMPLVMGRRSNGALVFASETCALFD 89
L+G ++ V + T DK +A RD G PL MG +G++ F+SE AL D
Sbjct: 117 LDGMFAFVLLDTRDKSFIAARDAIGICPLYMGWGLDGSVWFSSEMKALSD 166
>sp|P0AG17|PUR1_SHIFL Amidophosphoribosyltransferase OS=Shigella flexneri GN=purF PE=3
SV=2
Length = 505
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 42 LEGAYSMV-FVTEDKLVAVRDPYGFMPLVMGRR----SNGALVFASETCAL 87
+ GAY+ V + +VA RDP G PLV+G+R + + ASE+ AL
Sbjct: 164 IRGAYACVAMIIGHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVAL 214
>sp|P0AG16|PUR1_ECOLI Amidophosphoribosyltransferase OS=Escherichia coli (strain K12)
GN=purF PE=1 SV=2
Length = 505
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 42 LEGAYSMV-FVTEDKLVAVRDPYGFMPLVMGRR----SNGALVFASETCAL 87
+ GAY+ V + +VA RDP G PLV+G+R + + ASE+ AL
Sbjct: 164 IRGAYACVAMIIGHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVAL 214
>sp|Q86A85|PUR1_DICDI Amidophosphoribosyltransferase OS=Dictyostelium discoideum GN=purF
PE=3 SV=1
Length = 521
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
Query: 34 RILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGR----------RSNGALVFASE 83
RI K E AY++ +T + + VRD G PL +G ++ V SE
Sbjct: 174 RIAHFMSKAEAAYALCLMTPNGIYGVRDSLGMRPLCLGSLEVPCKDDPTKTITRYVLTSE 233
Query: 84 TCAL 87
+CA+
Sbjct: 234 SCAI 237
>sp|Q10MX3|ASNS1_ORYSJ Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Oryza sativa
subsp. japonica GN=Os03g0291500 PE=2 SV=1
Length = 604
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 37 DVCEKLEGAYSMV-FVTEDK-LVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87
D + L+G ++ V + T K +A RD G PL +GR S+GA+ +SE AL
Sbjct: 113 DFVDMLDGVFAFVLYDTRTKTYMAARDAIGVNPLYIGRGSDGAVWISSEMKAL 165
>sp|O68956|GLMS_MYCS2 Glutamine--fructose-6-phosphate aminotransferase [isomerizing]
OS=Mycobacterium smegmatis (strain ATCC 700084 /
mc(2)155) GN=glmS PE=3 SV=3
Length = 628
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Query: 14 SDTVVVLHLIPIS-----KARPFFLRILDVCEKLEGAYSMVFVTED---KLVAVRDPYGF 65
+DT V +HL+ A F +L V ++LEG +++VF + D +VA R
Sbjct: 131 TDTEVAVHLVARQYTQGDTAGDFPASVLAVLQRLEGHFTLVFASADDPGTIVAARRS--- 187
Query: 66 MPLVMGRRSNGALVFASETCALFD 89
PLV+G +G + S+ A +
Sbjct: 188 TPLVLG-IGDGEMFVGSDVAAFIE 210
>sp|P78753|ASNS_SCHPO Probable asparagine synthetase [glutamine-hydrolyzing]
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=asn1 PE=1 SV=3
Length = 557
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 42 LEGAYSMVFVTEDK--LVAVRDPYGFMPLVMGRRSNG--ALVFASETCAL 87
L+G +S V +DK +VA RDP G L G S+ FASE AL
Sbjct: 118 LDGMFSWVLYDQDKDKVVAARDPIGITTLYQGFSSDSPDTAYFASELKAL 167
>sp|Q5UQE1|ASNS_MIMIV Probable asparagine synthetase [glutamine-hydrolyzing]
OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R475 PE=3
SV=3
Length = 550
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 22 LIPISKARPFFLRILDVCEKLEGAYSMVFVTE--DKLVAVRDPYGFMPLVMGRRSNGALV 79
L+P+ R F + D L+ ++ V V + KL A RD YG PL G L+
Sbjct: 104 LLPLFNLRGFEGLLSD----LDAEFATVIVDKYNSKLYAARDKYGVRPLYYGYNCEKGLI 159
Query: 80 -FASETCAL 87
FASE AL
Sbjct: 160 GFASELKAL 168
>sp|P57138|GLMS_BUCAI Glutamine--fructose-6-phosphate aminotransferase [isomerizing]
OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=glmS PE=3 SV=2
Length = 609
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Query: 6 QPFVAGYSSDTVVVLHLI--PISKARPFFLRIL-DVCEKLEGAYSMVFVTED---KLVAV 59
Q ++ +DT V+ HL+ +K + ++++ + +KL+G YSMV + ++ KL+A
Sbjct: 115 QGYIFSSDTDTEVIAHLLHWEQNKKKDSLIKVIQNSIKKLDGNYSMVVIDQNNPSKLIAA 174
Query: 60 RDPYGFMPLVMGRRSNGALVFASETCALF 88
R PL++G + + AS+ AL
Sbjct: 175 RSG---SPLIIGLGTEENFI-ASDQIALL 199
>sp|Q8TZ14|GLMS_METKA Glutamine--fructose-6-phosphate aminotransferase [isomerizing]
OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM
9639 / NBRC 100938) GN=glmS PE=3 SV=3
Length = 614
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 14 SDTVVVLHLIP--ISKARPFFLRILDVCEKLEGAYSMVFVTE---DKLVAVRDPYGFMPL 68
+DT VV HLI + + + FF ++ +LEG+Y++ + D ++A R PL
Sbjct: 128 TDTEVVPHLIEQGMKEGKSFFEAFVEAVRRLEGSYAIAAICTREPDVILAARKE---SPL 184
Query: 69 VMGRRSNGALVFASETCALF 88
V+G +G + AS+ A+
Sbjct: 185 VVGLGDDGNFL-ASDIPAIL 203
>sp|Q51342|PUR1_PSEAE Amidophosphoribosyltransferase OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=purF
PE=3 SV=3
Length = 501
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 38 VCEKLEGAYSMV-FVTEDKLVAVRDPYGFMPLVMGRR--SNGA-LVFASETCAL 87
V ++ G Y++V +T +V RDP P+V G+R NG + ASE+ AL
Sbjct: 159 VHDRCVGGYAVVAMITGHGIVGFRDPNAIRPIVFGQRHTENGVEYMIASESVAL 212
>sp|P22106|ASNB_ECOLI Asparagine synthetase B [glutamine-hydrolyzing] OS=Escherichia coli
(strain K12) GN=asnB PE=1 SV=3
Length = 554
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 14 SDTVVVLHLIPISKARPFFLRILDVCEKLEG--AYSMVFVTEDKLVAVRDPYGFMPLVMG 71
SD V+L L + P FL + L+G A+++ +D + RD G +PL MG
Sbjct: 98 SDCEVILALY--QEKGPEFL------DDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMG 149
Query: 72 RRSNGALVFASETCAL 87
+G L ASE AL
Sbjct: 150 YDEHGQLYVASEMKAL 165
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.142 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,236,600
Number of Sequences: 539616
Number of extensions: 1055714
Number of successful extensions: 2505
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2456
Number of HSP's gapped (non-prelim): 67
length of query: 89
length of database: 191,569,459
effective HSP length: 59
effective length of query: 30
effective length of database: 159,732,115
effective search space: 4791963450
effective search space used: 4791963450
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)