Query 043065
Match_columns 89
No_of_seqs 129 out of 1067
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 12:29:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043065.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043065hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07631 amidophosphoribosyltr 99.9 5.4E-23 1.2E-27 156.3 11.1 74 13-87 135-208 (475)
2 PRK07272 amidophosphoribosyltr 99.9 1.6E-22 3.5E-27 154.1 11.4 75 13-87 136-210 (484)
3 PRK06781 amidophosphoribosyltr 99.9 5.1E-22 1.1E-26 150.9 11.8 75 13-88 135-209 (471)
4 PRK08525 amidophosphoribosyltr 99.9 4.7E-22 1E-26 150.2 11.3 75 13-87 125-199 (445)
5 PRK06388 amidophosphoribosyltr 99.9 8.3E-22 1.8E-26 149.9 10.9 75 13-88 142-217 (474)
6 PRK09123 amidophosphoribosyltr 99.9 9.9E-22 2.1E-26 149.6 11.1 75 13-88 146-220 (479)
7 PLN02440 amidophosphoribosyltr 99.9 1.7E-21 3.7E-26 148.3 10.7 76 13-88 125-200 (479)
8 COG0034 PurF Glutamine phospho 99.9 1.6E-21 3.4E-26 146.7 10.2 76 13-88 131-207 (470)
9 PRK05793 amidophosphoribosyltr 99.9 3.6E-21 7.7E-26 146.2 10.5 75 13-88 140-214 (469)
10 PRK07349 amidophosphoribosyltr 99.9 5.3E-21 1.2E-25 146.2 11.0 75 13-87 158-237 (500)
11 cd03766 Gn_AT_II_novel Gn_AT_I 99.8 7.4E-21 1.6E-25 129.1 9.7 82 2-86 82-166 (181)
12 KOG0572 Glutamine phosphoribos 99.8 1.3E-20 2.8E-25 139.7 10.6 88 1-88 84-214 (474)
13 cd01909 betaLS_CarA_N Glutamin 99.8 4.1E-21 8.8E-26 132.4 6.3 68 11-88 78-146 (199)
14 TIGR01134 purF amidophosphorib 99.8 2.7E-20 5.8E-25 140.6 11.2 75 13-88 124-200 (442)
15 PRK08341 amidophosphoribosyltr 99.8 2.9E-20 6.2E-25 140.5 10.4 74 13-88 124-199 (442)
16 PRK09246 amidophosphoribosyltr 99.8 2.6E-20 5.7E-25 142.4 10.1 76 13-88 125-213 (501)
17 cd01907 GlxB Glutamine amidotr 99.8 4.4E-20 9.5E-25 130.5 10.1 76 12-88 132-228 (249)
18 PF13537 GATase_7: Glutamine a 99.8 2.2E-20 4.7E-25 119.7 6.5 68 13-88 52-124 (125)
19 cd00715 GPATase_N Glutamine am 99.8 1.6E-19 3.6E-24 127.3 11.6 76 13-88 124-200 (252)
20 cd00714 GFAT Glutamine amidotr 99.8 8.9E-20 1.9E-24 126.3 9.0 72 13-88 122-198 (215)
21 PLN02549 asparagine synthase ( 99.8 3.7E-20 8E-25 143.6 7.7 79 2-88 78-165 (578)
22 PRK07847 amidophosphoribosyltr 99.8 9.9E-20 2.1E-24 139.5 9.9 78 10-88 151-229 (510)
23 cd01910 Wali7 This domain is p 99.8 9.8E-20 2.1E-24 127.3 6.9 86 2-88 81-173 (224)
24 cd00712 AsnB Glutamine amidotr 99.8 3.8E-19 8.2E-24 122.9 9.1 68 12-88 95-164 (220)
25 PRK09431 asnB asparagine synth 99.8 1.4E-19 3E-24 139.8 7.4 71 10-88 94-166 (554)
26 PTZ00077 asparagine synthetase 99.8 3.4E-19 7.4E-24 138.4 9.0 71 10-88 100-173 (586)
27 cd00352 Gn_AT_II Glutamine ami 99.8 2.4E-18 5.2E-23 117.0 10.9 76 13-88 126-204 (220)
28 TIGR03104 trio_amidotrans aspa 99.8 1.4E-18 3E-23 134.9 7.6 70 10-88 95-166 (589)
29 PF13522 GATase_6: Glutamine a 99.8 7.2E-18 1.6E-22 109.3 9.0 62 13-83 70-133 (133)
30 TIGR01536 asn_synth_AEB aspara 99.8 3.1E-18 6.6E-23 129.3 7.9 69 11-88 94-164 (467)
31 COG0367 AsnB Asparagine syntha 99.8 3.7E-18 8E-23 131.6 8.4 71 9-88 93-165 (542)
32 TIGR01135 glmS glucosamine--fr 99.7 1.6E-17 3.4E-22 128.8 9.3 72 13-88 122-198 (607)
33 PRK00331 glucosamine--fructose 99.7 2.3E-17 5E-22 127.8 9.3 72 13-88 123-199 (604)
34 TIGR03108 eps_aminotran_1 exos 99.7 2E-17 4.2E-22 128.8 8.0 70 11-88 96-167 (628)
35 PTZ00295 glucosamine-fructose- 99.7 3.3E-17 7.2E-22 128.0 9.1 72 13-88 153-229 (640)
36 PLN02981 glucosamine:fructose- 99.7 1.8E-16 3.9E-21 124.8 8.9 73 13-88 145-251 (680)
37 PTZ00394 glucosamine-fructose- 99.7 2.7E-16 5.9E-21 123.7 8.8 73 13-88 155-254 (670)
38 COG0449 GlmS Glucosamine 6-pho 99.7 8.7E-17 1.9E-21 124.7 5.6 83 2-88 102-196 (597)
39 cd00713 GltS Glutamine amidotr 99.6 1.7E-15 3.7E-20 113.8 10.9 83 5-87 262-371 (413)
40 KOG0571 Asparagine synthase (g 99.6 1.5E-15 3.2E-20 114.3 2.7 73 10-89 92-166 (543)
41 PF00310 GATase_2: Glutamine a 99.5 1.4E-13 3E-18 102.1 8.8 81 4-84 254-361 (361)
42 cd01908 YafJ Glutamine amidotr 99.4 2.1E-12 4.6E-17 91.3 9.5 77 11-88 135-240 (257)
43 TIGR03442 conserved hypothetic 99.4 1.3E-12 2.9E-17 92.6 8.5 69 12-84 144-223 (251)
44 PRK11750 gltB glutamate syntha 99.2 9.7E-11 2.1E-15 98.1 9.6 84 4-87 271-381 (1485)
45 PF12481 DUF3700: Aluminium in 99.0 6.3E-10 1.4E-14 77.8 5.1 51 36-86 123-175 (228)
46 KOG0573 Asparagine synthase [A 98.8 3.8E-08 8.2E-13 75.0 8.3 64 13-79 88-153 (520)
47 KOG1268 Glucosamine 6-phosphat 98.0 3.2E-06 7E-11 65.8 3.0 61 10-73 135-203 (670)
48 PF13230 GATase_4: Glutamine a 97.7 0.00018 3.9E-09 51.7 7.1 49 13-61 127-187 (271)
49 PF09147 DUF1933: Domain of un 97.0 0.0052 1.1E-07 42.3 7.2 53 13-73 77-130 (201)
50 KOG0399 Glutamate synthase [Am 95.3 0.14 3E-06 44.4 8.4 82 5-86 345-454 (2142)
51 COG0067 GltB Glutamate synthas 95.2 0.045 9.8E-07 41.3 4.9 46 40-85 325-370 (371)
52 COG0067 GltB Glutamate synthas 94.7 0.085 1.8E-06 39.9 5.2 76 13-89 254-346 (371)
53 PF08973 TM1506: Domain of unk 77.9 0.8 1.7E-05 30.0 0.3 26 43-69 10-35 (134)
54 PF04028 DUF374: Domain of unk 76.0 6.9 0.00015 22.9 3.9 39 13-51 19-65 (74)
55 PHA02679 ORF091 IMV membrane p 56.8 4.3 9.3E-05 22.5 0.3 10 1-10 1-10 (53)
56 PF06269 DUF1029: Protein of u 55.2 4.8 0.0001 22.3 0.3 10 1-10 1-10 (53)
57 PF08144 CPL: CPL (NUC119) dom 51.3 6.2 0.00013 26.0 0.5 23 60-82 2-24 (148)
58 PF12594 DUF3764: Protein of u 51.3 7.1 0.00015 23.7 0.7 19 58-76 28-46 (86)
59 PHA03047 IMV membrane receptor 49.4 6.7 0.00014 21.7 0.3 10 1-10 1-10 (53)
60 PHA02724 hydrophobic IMV membr 49.4 6.7 0.00014 21.7 0.3 9 1-9 1-9 (53)
61 COG2121 Uncharacterized protei 46.9 50 0.0011 23.4 4.4 40 13-52 77-124 (214)
62 PRK02240 GTP cyclohydrolase II 45.8 48 0.001 24.0 4.3 55 1-62 8-63 (254)
63 cd00836 FERM_C FERM_C domain. 40.8 72 0.0016 18.7 4.0 22 55-77 5-26 (92)
64 COG4911 Uncharacterized conser 39.8 53 0.0012 21.0 3.3 40 13-52 50-91 (123)
65 PF08923 MAPKK1_Int: Mitogen-a 36.8 1E+02 0.0022 19.6 4.4 27 34-60 6-32 (119)
66 PRK10545 nucleotide excision r 35.7 33 0.00072 25.1 2.2 21 54-74 35-55 (286)
67 COG2996 Predicted RNA-bindinin 32.7 33 0.00072 25.3 1.8 38 13-50 224-267 (287)
68 COG4315 Uncharacterized protei 31.9 43 0.00094 21.8 2.1 32 39-73 86-117 (138)
69 PF14191 YodL: YodL-like 30.4 73 0.0016 19.8 2.9 59 2-68 35-99 (103)
70 PF06972 DUF1296: Protein of u 29.8 35 0.00075 19.4 1.2 34 3-39 10-43 (60)
71 smart00696 DM9 Repeats found i 28.4 63 0.0014 18.5 2.2 20 53-73 14-33 (71)
72 KOG0183 20S proteasome, regula 25.5 85 0.0019 22.5 2.8 28 59-86 124-152 (249)
73 PF06386 GvpL_GvpF: Gas vesicl 25.1 1.1E+02 0.0023 21.4 3.3 42 5-51 78-122 (249)
74 PF05742 NRDE: NRDE protein; 24.8 2.6E+02 0.0057 19.9 6.0 69 13-82 83-157 (273)
75 PF11990 DUF3487: Protein of u 24.1 82 0.0018 20.1 2.4 21 3-23 11-31 (121)
76 PF12221 HflK_N: Bacterial mem 24.0 62 0.0014 16.9 1.5 18 29-46 21-38 (42)
77 PRK03467 hypothetical protein; 23.4 2.3E+02 0.005 18.7 6.1 34 45-85 19-53 (144)
78 PF12447 DUF3683: Protein of u 23.0 56 0.0012 20.9 1.4 20 7-26 8-27 (115)
79 PF05165 GGDN: GGDN family; I 21.1 1.1E+02 0.0023 22.2 2.6 56 1-63 5-61 (246)
80 PF04566 RNA_pol_Rpb2_4: RNA p 20.6 1.7E+02 0.0038 16.3 4.7 28 42-70 30-60 (63)
No 1
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.89 E-value=5.4e-23 Score=156.34 Aligned_cols=74 Identities=43% Similarity=0.617 Sum_probs=70.8
Q ss_pred CChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEeCCEEEEEEcCCCCccEEEEEecCCeEEEEeccccc
Q 043065 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al 87 (89)
.||||++++++++++..++.+++++++++|+|+||++++++++++++|||+|+|||+||.. ++.++||||.+||
T Consensus 135 ~sDtEVi~~Li~~~~~~~~~eai~~~~~~l~G~yalvi~~~~~l~aaRDp~GirPL~~G~~-~~~~~~ASE~~Al 208 (475)
T PRK07631 135 TSDTEVLAHLIKRSGAPTLKEQIKNALSMLKGAYAFLLMTETELYVALDPNGLRPLSIGRL-GDAYVVASETCAF 208 (475)
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCceeeEEeCCEEEEEECCCCCCCEEEEEe-CCEEEEEeChHHH
Confidence 8999999999999887789999999999999999999999999999999999999999998 5789999999998
No 2
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.89 E-value=1.6e-22 Score=154.06 Aligned_cols=75 Identities=44% Similarity=0.752 Sum_probs=70.4
Q ss_pred CChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEeCCEEEEEEcCCCCccEEEEEecCCeEEEEeccccc
Q 043065 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al 87 (89)
.||||+|+|++.++...++.+++.+++++|+|+||++++++++++++|||+|+|||+||..+++.++||||.+||
T Consensus 136 ~sDtEVI~~Li~~~~~~~~~eai~~~~~~l~G~ya~~i~~~~~l~a~RDp~GirPL~~G~~~~~~~~~ASE~~Al 210 (484)
T PRK07272 136 SSDTEILMHLIRRSHNPTFMGKLKEALNTVKGGFAYLLLTEDKLIAALDPNGFRPLSIGKMKNGAYVVASETCAF 210 (484)
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHccCceeEEEEECCEEEEEECCCCCCcEEEEEecCCEEEEEECHHHH
Confidence 899999999999987778999999999999999999999999999999999999999998744579999999998
No 3
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.88 E-value=5.1e-22 Score=150.95 Aligned_cols=75 Identities=39% Similarity=0.635 Sum_probs=71.3
Q ss_pred CChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEeCCEEEEEEcCCCCccEEEEEecCCeEEEEecccccC
Q 043065 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCALF 88 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al~ 88 (89)
.||||+|++++++++..++.+++++++++|+|+||++++++++++++||++|.|||+||.. ++.++||||.+||.
T Consensus 135 ~sDtEvI~~Li~~~~~~~~~eai~~~~~~l~G~ya~vi~~~~~l~aaRD~~GirPL~~g~~-~~~~~~ASE~~Al~ 209 (471)
T PRK06781 135 SSDTEVLLHLIKRSTKDSLIESVKEALNKVKGAFAYLLLTGNEMIVALDPNGFRPLSIGKM-GDAYVVASETCAFD 209 (471)
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCcEEEEEEECCEEEEEECCCCCCCeEEEEE-CCEEEEEECchHhh
Confidence 8999999999999887889999999999999999999999999999999999999999998 57899999999985
No 4
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.88 E-value=4.7e-22 Score=150.22 Aligned_cols=75 Identities=41% Similarity=0.708 Sum_probs=70.2
Q ss_pred CChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEeCCEEEEEEcCCCCccEEEEEecCCeEEEEeccccc
Q 043065 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al 87 (89)
+||||++++++.++++.++.+++.+++++|+|+|||+++++++++++||++|+|||+||..+++.++||||.+||
T Consensus 125 ~sDtEvi~~l~~~~~~~~~~ea~~~~~~~L~G~fa~vi~~~~~l~~~RD~~GirPL~~g~~~~~~~~~ASE~~al 199 (445)
T PRK08525 125 NMDTENLIHLIARSKKESLKDRIIEALKKIIGAYCLVLLSRSKMFAIRDPHGVRPLSLGRLKDGGYIVASETCAF 199 (445)
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCceEEEEEeCCEEEEEECCCCCCCeEEEEecCCEEEEEECHHHh
Confidence 799999999999887778999999999999999999999999999999999999999998644689999999998
No 5
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.87 E-value=8.3e-22 Score=149.87 Aligned_cols=75 Identities=35% Similarity=0.534 Sum_probs=69.1
Q ss_pred CChHHHHHHHHHhhc-CCChHHHHHHHHhhccCceEEEEEeCCEEEEEEcCCCCccEEEEEecCCeEEEEecccccC
Q 043065 13 SSDTVVVLHLIPISK-ARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCALF 88 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~-~~~~~~a~~~~~~~l~G~fa~~i~~~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al~ 88 (89)
.|||||+++++++.. ..++.+++++++++|+|+||++++++++++++||++|+|||+||.. ++.++||||.+||.
T Consensus 142 ~sDtEVi~~li~~~~~~~~~~eai~~~~~~l~G~ya~vi~~~~~l~a~RDp~GiRPL~~G~~-~~~~~~ASE~~Al~ 217 (474)
T PRK06388 142 DSDTEVMLAELSRNISKYGLKEGFERSMERLRGAYACALMINDRLYAIRDPNGIRPLVLGKN-FDGYIIASESCAID 217 (474)
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCceeEEEEECCEEEEEECCCCCCceEEEec-CCEEEEEEChHHHH
Confidence 999999999997654 3578999999999999999999999999999999999999999998 57899999999975
No 6
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.87 E-value=9.9e-22 Score=149.61 Aligned_cols=75 Identities=49% Similarity=0.805 Sum_probs=70.5
Q ss_pred CChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEeCCEEEEEEcCCCCccEEEEEecCCeEEEEecccccC
Q 043065 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCALF 88 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al~ 88 (89)
.||||+|++++.++...++.+++.+++++|+|+||++++++++++++||++|+|||+||.. ++.++||||.+||.
T Consensus 146 ~sDSEvi~~Li~~~~~~~~~eai~~~~~~L~G~ya~vil~~~~l~a~RD~~GirPL~~g~~-~~~~~~ASE~~Al~ 220 (479)
T PRK09123 146 TSDTEVILHLIARSRKASFLDRFIDALRQVEGAYSLVALTNTKLIGARDPLGIRPLVLGEL-DGSPILASETCALD 220 (479)
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcceeEEEEECCEEEEEECCCCCCceEEEEE-CCEEEEEECchHHh
Confidence 7999999999998877789999999999999999999999999999999999999999998 57899999999973
No 7
>PLN02440 amidophosphoribosyltransferase
Probab=99.86 E-value=1.7e-21 Score=148.31 Aligned_cols=76 Identities=84% Similarity=1.244 Sum_probs=70.2
Q ss_pred CChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEeCCEEEEEEcCCCCccEEEEEecCCeEEEEecccccC
Q 043065 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCALF 88 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al~ 88 (89)
.||||+|++++.++.+.++.+++.+++++|+|+||++++++++++++||++|+|||+||..+++.++||||.+||.
T Consensus 125 ~sDsEvi~~li~~~~~~~~~~a~~~~~~~l~G~fa~vi~~~~~l~a~RD~~G~RPL~~g~~~~~~~~vASE~~al~ 200 (479)
T PLN02440 125 SSDTEVLLHLIAISKARPFFSRIVDACEKLKGAYSMVFLTEDKLVAVRDPHGFRPLVMGRRSNGAVVFASETCALD 200 (479)
T ss_pred CCHHHHHHHHHHHhhhhhHHHHHHHHHHHhccceeeeEEECCEEEEEECCCCCCceEEEEeCCCEEEEEECchHHh
Confidence 8999999999998876788999999999999999999999889999999999999999986456799999999975
No 8
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.86 E-value=1.6e-21 Score=146.67 Aligned_cols=76 Identities=43% Similarity=0.713 Sum_probs=70.8
Q ss_pred CChHHHHHHHHHhhcC-CChHHHHHHHHhhccCceEEEEEeCCEEEEEEcCCCCccEEEEEecCCeEEEEecccccC
Q 043065 13 SSDTVVVLHLIPISKA-RPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCALF 88 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~~-~~~~~a~~~~~~~l~G~fa~~i~~~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al~ 88 (89)
.+|||+++|+|.+... .++.++++.++++++|+||++++.+++++++|||.|.|||++|..+++.|++|||+|||-
T Consensus 131 ~sDsEvll~l~a~~~~~~~~~~a~~~~~~~v~G~ys~v~~~~~~lia~RDP~GiRPL~iG~~~dG~yvvaSEt~Ald 207 (470)
T COG0034 131 TSDSEVLLHLLARELDEDDIFEAVKEVLRRVKGAYALVALIKDGLIAVRDPNGIRPLVLGKLGDGFYVVASETCALD 207 (470)
T ss_pred CccHHHHHHHHHhhcccccHHHHHHHHHhhcCCcEEEEEEECCeEEEEECCCCCccceeeecCCCCEEEEechhhhh
Confidence 7999999999999875 799999999999999999999999889999999999999999998545599999999973
No 9
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.86 E-value=3.6e-21 Score=146.23 Aligned_cols=75 Identities=39% Similarity=0.683 Sum_probs=70.9
Q ss_pred CChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEeCCEEEEEEcCCCCccEEEEEecCCeEEEEecccccC
Q 043065 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCALF 88 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al~ 88 (89)
.||||++++++.++++.++.+|+.+++++|+|+||++++++++++++||++|.|||+||.. ++.++||||.+||.
T Consensus 140 ~sDSEvi~~li~~~~~~~~~~ai~~~~~~l~G~ya~vi~~~~~l~a~RD~~GirPL~~g~~-~~~~~vASE~~al~ 214 (469)
T PRK05793 140 SIDSEVILNLIARSAKKGLEKALVDAIQAIKGSYALVILTEDKLIGVRDPHGIRPLCLGKL-GDDYILSSESCALD 214 (469)
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhhceEEEEECCEEEEEECCCCCCCcEEEEE-CCEEEEEEChHHHh
Confidence 7999999999999877789999999999999999999999999999999999999999998 57899999999984
No 10
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.85 E-value=5.3e-21 Score=146.21 Aligned_cols=75 Identities=35% Similarity=0.612 Sum_probs=68.0
Q ss_pred CChHHHHHHHHHhhcC--CChHHHHHHHHhhccCceEEEEEeCCEEEEEEcCCCCccEEEEEec---CCeEEEEeccccc
Q 043065 13 SSDTVVVLHLIPISKA--RPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRS---NGALVFASETCAL 87 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~~--~~~~~a~~~~~~~l~G~fa~~i~~~~~l~~~rD~~G~rPL~~g~~~---~~~~~~aSE~~al 87 (89)
.||||+|++++++... .++.+++++++++|+|+|||+++++++++++||++|+|||+||..+ ++.++||||.+||
T Consensus 158 ~sDtEVi~~li~~~~~~~~~~~eai~~~~~~l~G~ya~vi~~~~~l~aaRDp~GiRPL~~G~~~~~~~~~~~~ASE~~Al 237 (500)
T PRK07349 158 TTDSEMIAFAIAQAVDAGKDWLEAAISAFQRCQGAFSLVIGTPEGLMGVRDPNGIRPLVIGTLGEGGPGRYVLASETCAL 237 (500)
T ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhEEEEEEeCCEEEEEECCCCCCCeEEEecccCCCCeEEEEeccchh
Confidence 9999999999987542 3789999999999999999999999999999999999999999862 2479999999998
No 11
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=99.85 E-value=7.4e-21 Score=129.10 Aligned_cols=82 Identities=24% Similarity=0.317 Sum_probs=68.2
Q ss_pred CccccceeeccCChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEeC--CEEEEEEcCCCCccEEEEEec-CCeE
Q 043065 2 LKNVQPFVAGYSSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTE--DKLVAVRDPYGFMPLVMGRRS-NGAL 78 (89)
Q Consensus 2 ~~n~qp~~~~~~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~~--~~l~~~rD~~G~rPL~~g~~~-~~~~ 78 (89)
|+|+..++. +.||||+++++|++++.. .+++.+++++|+|+|||+++|+ +++|++||++|+|||||+..+ ++.+
T Consensus 82 IyN~~~l~~-s~sDtEvi~~l~~~~g~~--~~~i~~~~~~L~G~fA~vi~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~l 158 (181)
T cd03766 82 LYNIDGVED-EENDTEVIFELLANCSSE--SQDILDVLSSIEGPFAFIYYDASENKLYFGRDCLGRRSLLYKLDPNGFEL 158 (181)
T ss_pred EECcccccC-CCCHHHHHHHHHHHHhhh--HHHHHHHHHhcccceEEEEEeCCCCEEEEEECCCCCcCcEEEeeCCCCcE
Confidence 445554443 589999999999988632 3677899999999999999994 899999999999999999984 5689
Q ss_pred EEEecccc
Q 043065 79 VFASETCA 86 (89)
Q Consensus 79 ~~aSE~~a 86 (89)
+|||+...
T Consensus 159 ~~aS~~~~ 166 (181)
T cd03766 159 SISSVSGS 166 (181)
T ss_pred EEEEccCC
Confidence 99999753
No 12
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.84 E-value=1.3e-20 Score=139.67 Aligned_cols=88 Identities=59% Similarity=0.880 Sum_probs=80.0
Q ss_pred CCccccceeecc--------------------------------CChHHHHHHHHHhhc-------CCChHHHHHHHHhh
Q 043065 1 MLKNVQPFVAGY--------------------------------SSDTVVVLHLIPISK-------ARPFFLRILDVCEK 41 (89)
Q Consensus 1 ~~~n~qp~~~~~--------------------------------~~DsEvi~~ll~~~~-------~~~~~~a~~~~~~~ 41 (89)
++.|.|||+..+ +||||+|++++.... ..++..+++.+++.
T Consensus 84 ~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~~~~~~~d~~~ri~~~~~~ 163 (474)
T KOG0572|consen 84 ALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDVYRVDAPDWFARIRDVMEL 163 (474)
T ss_pred ccccccceEeeccCceEEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHHHHhchHhhhcccCccHHHHHHHHHHh
Confidence 478999999877 999999999998862 47999999999999
Q ss_pred ccCceEEEEEeCCEEEEEEcCCCCccEEEEEecCC----eEEEEecccccC
Q 043065 42 LEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNG----ALVFASETCALF 88 (89)
Q Consensus 42 l~G~fa~~i~~~~~l~~~rD~~G~rPL~~g~~~~~----~~~~aSE~~al~ 88 (89)
+.|+||++++..+++|++|||+|.|||++|...+. .|++|||+|++.
T Consensus 164 ~~g~Yslv~m~~d~l~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~ 214 (474)
T KOG0572|consen 164 LPGAYSLVFMTADKLYAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFL 214 (474)
T ss_pred cCCceeEEEEEccEEEEEecCCCCccceEeeecCCCCcceEEEEecceeee
Confidence 99999999999999999999999999999988542 799999999985
No 13
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.84 E-value=4.1e-21 Score=132.42 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=63.3
Q ss_pred ccCChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEeC-CEEEEEEcCCCCccEEEEEecCCeEEEEecccccC
Q 043065 11 GYSSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTE-DKLVAVRDPYGFMPLVMGRRSNGALVFASETCALF 88 (89)
Q Consensus 11 ~~~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~~-~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al~ 88 (89)
.+.+|+|++++++++|+ .+++++|+|+|||++||+ ++++++||++|.|||||... +.++||||.++|+
T Consensus 78 ~t~sDtEvll~~y~~~G--------~~~l~~L~G~FAfai~D~~~~L~laRDr~GikPLYy~~~--~~l~FASEikaLl 146 (199)
T cd01909 78 AVLGDAELLLLLLTRLG--------LHAFRLAEGDFCFFIEDGNGRLTLATDHAGSVPVYLVQA--GEVWATTELKLLA 146 (199)
T ss_pred CCCCHHHHHHHHHHHHh--------HHHHHHcCEEEEEEEEcCCCEEEEEECCCCCcCeEEEEC--CeEEEEeCHHHHh
Confidence 56899999999999999 889999999999999995 88999999999999999876 5899999999985
No 14
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.84 E-value=2.7e-20 Score=140.57 Aligned_cols=75 Identities=44% Similarity=0.746 Sum_probs=69.8
Q ss_pred CChHHHHHHHHHhhc--CCChHHHHHHHHhhccCceEEEEEeCCEEEEEEcCCCCccEEEEEecCCeEEEEecccccC
Q 043065 13 SSDTVVVLHLIPISK--ARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCALF 88 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~--~~~~~~a~~~~~~~l~G~fa~~i~~~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al~ 88 (89)
.||||++++++.+++ +.++.+++.+++++|+|+||++++++++++++||++|.|||+||.. ++.++||||.+||.
T Consensus 124 ~sDSEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~falvi~~~~~L~a~RD~~G~rPL~~g~~-~~~~~~ASE~~al~ 200 (442)
T TIGR01134 124 TSDSEVLLHLLARERLEEDDLFEAIARVLKRVRGAYALVIMIGDGLIAVRDPHGIRPLVLGKR-GDGYVVASESCALD 200 (442)
T ss_pred CCHHHHHHHHHHHhhcccCCHHHHHHHHHHHhCccceEEEEECCEEEEEECCCCCCCcEEEEe-CCEEEEEeCchHhc
Confidence 899999999999875 4689999999999999999999999999999999999999999998 57899999999874
No 15
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.83 E-value=2.9e-20 Score=140.53 Aligned_cols=74 Identities=32% Similarity=0.450 Sum_probs=66.3
Q ss_pred CChHHHHHHHHHhhc-C-CChHHHHHHHHhhccCceEEEEEeCCEEEEEEcCCCCccEEEEEecCCeEEEEecccccC
Q 043065 13 SSDTVVVLHLIPISK-A-RPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCALF 88 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~-~-~~~~~a~~~~~~~l~G~fa~~i~~~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al~ 88 (89)
.||||+|+|++.+.. . +++.+++++++++|+|+||++++++++++++||++|+|||+||.. +.++||||.+||.
T Consensus 124 ~sDtEVI~~li~~~~~~~~~~~~ai~~~~~~l~G~yal~i~~~~~l~a~RD~~GirPL~~G~~--~~~~~ASE~~Al~ 199 (442)
T PRK08341 124 SVDTELIGISFLWHYSETGDEFEAMREVFNEVKGAYSVAILFDGKIIVARDPVGFRPLSYGEG--DGHYFASEDSALR 199 (442)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCceEEEEEECCEEEEEEcCCCceEEEEEEC--CEEEEEeCcHHHH
Confidence 899999999987643 2 477899999999999999999999999999999999999999984 4589999999974
No 16
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.83 E-value=2.6e-20 Score=142.42 Aligned_cols=76 Identities=36% Similarity=0.559 Sum_probs=67.2
Q ss_pred CChHHHHHHHHHhhcC---------CChHHHHHHHHhhccCceEEEEEe-CCEEEEEEcCCCCccEEEEEec---CCeEE
Q 043065 13 SSDTVVVLHLIPISKA---------RPFFLRILDVCEKLEGAYSMVFVT-EDKLVAVRDPYGFMPLVMGRRS---NGALV 79 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~~---------~~~~~a~~~~~~~l~G~fa~~i~~-~~~l~~~rD~~G~rPL~~g~~~---~~~~~ 79 (89)
.||||+|++++.++.. .++.+++.+++++++|+||++++. +++++++||++|+|||+||..+ ++.++
T Consensus 125 ~sDsEvi~~li~~~l~~~~g~~~~~~~l~eai~~~~~~l~Gays~v~~~~~~~l~a~RDp~GirPL~~g~~~~~~~~~~~ 204 (501)
T PRK09246 125 TSDSEVLLNVFAHELQKFRGLPLTPEDIFAAVAAVHRRVRGAYAVVAMIIGHGLVAFRDPHGIRPLVLGKRETEGGTEYM 204 (501)
T ss_pred CCHHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcccceeeEEEecCCcEEEEECCCCCCCeEEEeecCCCCCEEE
Confidence 8999999999988642 378899999999999999999776 7889999999999999999873 24799
Q ss_pred EEecccccC
Q 043065 80 FASETCALF 88 (89)
Q Consensus 80 ~aSE~~al~ 88 (89)
||||.+||.
T Consensus 205 ~ASE~~Al~ 213 (501)
T PRK09246 205 VASESVALD 213 (501)
T ss_pred EEECHHHHH
Confidence 999999984
No 17
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.83 E-value=4.4e-20 Score=130.49 Aligned_cols=76 Identities=24% Similarity=0.372 Sum_probs=65.4
Q ss_pred cCChHHHHHHHHHhhc--CCCh-------------------HHHHHHHHhhccCceEEEEEeCCEEEEEEcCCCCccEEE
Q 043065 12 YSSDTVVVLHLIPISK--ARPF-------------------FLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVM 70 (89)
Q Consensus 12 ~~~DsEvi~~ll~~~~--~~~~-------------------~~a~~~~~~~l~G~fa~~i~~~~~l~~~rD~~G~rPL~~ 70 (89)
+.||||+++++++... .++. .+++..++++|+|+||++++++++++++||++|.|||+|
T Consensus 132 ~~sDsEvi~~ll~~~~~~~g~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~~~~~RD~~G~rPL~~ 211 (249)
T cd01907 132 TETDTEVIAYYLDLLLRKGGLPLEYYKHIIRMPEEERELLLALRLTYRLADLDGPFTIIVGTPDGFIVIRDRIKLRPAVV 211 (249)
T ss_pred CCCHHHHHHHHHHHHHHhCCChHHHHHHHhcCCHhHHHHHHHHHHHhCcccCCCCEEEEEEeCCeEEEEecCCCCccEEE
Confidence 3999999999998643 2343 336668889999999999999999999999999999999
Q ss_pred EEecCCeEEEEecccccC
Q 043065 71 GRRSNGALVFASETCALF 88 (89)
Q Consensus 71 g~~~~~~~~~aSE~~al~ 88 (89)
|.. ++.++||||.+||.
T Consensus 212 g~~-~~~~~~ASE~~al~ 228 (249)
T cd01907 212 AET-DDYVAIASEECAIR 228 (249)
T ss_pred EEE-CCEEEEEEcHHHHh
Confidence 998 57899999999985
No 18
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.82 E-value=2.2e-20 Score=119.69 Aligned_cols=68 Identities=35% Similarity=0.587 Sum_probs=53.1
Q ss_pred CChHHHHHHHHHh---hcCCChHHHHHHHHhhccCceEEEEEeC--CEEEEEEcCCCCccEEEEEecCCeEEEEeccccc
Q 043065 13 SSDTVVVLHLIPI---SKARPFFLRILDVCEKLEGAYSMVFVTE--DKLVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87 (89)
Q Consensus 13 ~~DsEvi~~ll~~---~~~~~~~~a~~~~~~~l~G~fa~~i~~~--~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al 87 (89)
.+|+|++++++++ ++ .+++++|+|+||+++||+ ++++++||++|+|||||+..+++.++||||.++|
T Consensus 52 ~~D~e~i~~~~~~~~~~~--------~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~rpLyy~~~~g~~~~faSe~~~L 123 (125)
T PF13537_consen 52 DSDSELILHLYEEYREWG--------EDFLKRLDGPFAFVIWDKDKKRLFLARDRFGIRPLYYGRTDGNGLAFASEIKAL 123 (125)
T ss_dssp SSHHHHHHHHHHH---HG--------GGGGGT--EEEEEEEEETTE--EEEEE-TT--S--EEEEETT-EEEEESSHHHH
T ss_pred CCCHHHHHHHHHHHHHHH--------HHHHHhCCceEEEEEEeCCCcEEEEEECCCCCCCeEEEEeCCCEEEEEEcHHHh
Confidence 8999999999987 55 889999999999999995 4699999999999999999943599999999988
Q ss_pred C
Q 043065 88 F 88 (89)
Q Consensus 88 ~ 88 (89)
+
T Consensus 124 ~ 124 (125)
T PF13537_consen 124 L 124 (125)
T ss_dssp H
T ss_pred c
Confidence 5
No 19
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=99.82 E-value=1.6e-19 Score=127.27 Aligned_cols=76 Identities=50% Similarity=0.777 Sum_probs=69.9
Q ss_pred CChHHHHHHHHHhhcC-CChHHHHHHHHhhccCceEEEEEeCCEEEEEEcCCCCccEEEEEecCCeEEEEecccccC
Q 043065 13 SSDTVVVLHLIPISKA-RPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCALF 88 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~~-~~~~~a~~~~~~~l~G~fa~~i~~~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al~ 88 (89)
.||||++++++.+++. .++.+++++++++|+|.||++++++++++++||+.|.|||+|+..+++.++||||..+|.
T Consensus 124 ~tDSEvi~~l~~~~~~~~~~~~al~~~~~~l~G~~a~~~~d~~~l~~~RD~~G~~PL~~~~~~~~~~~vASE~~al~ 200 (252)
T cd00715 124 TSDSEVILHLIARSLAKDDLFEAIIDALERVKGAYSLVIMTADGLIAVRDPHGIRPLVLGKLEGDGYVVASESCALD 200 (252)
T ss_pred CCHHHHHHHHHHHhhccCCHHHHHHHHHHhccCceEEEEEECCEEEEEECCCCCCCeEEEEeCCCeEEEEECHHHhc
Confidence 7999999999999876 489999999999999999999999999999999999999999998437899999998764
No 20
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=99.82 E-value=8.9e-20 Score=126.27 Aligned_cols=72 Identities=33% Similarity=0.526 Sum_probs=65.2
Q ss_pred CChHHHHHHHHHhhcC--CChHHHHHHHHhhccCceEEEEEe---CCEEEEEEcCCCCccEEEEEecCCeEEEEeccccc
Q 043065 13 SSDTVVVLHLIPISKA--RPFFLRILDVCEKLEGAYSMVFVT---EDKLVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~~--~~~~~a~~~~~~~l~G~fa~~i~~---~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al 87 (89)
.||||++++++.+++. .++.+++++++++|+|.||+++++ +++++++||. ||||||.. ++.++||||.+||
T Consensus 122 ~sDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~fa~~~~d~~~~~~l~~~RD~---~PL~~~~~-~~~~~~aSE~~al 197 (215)
T cd00714 122 ETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGAYALAVISKDEPDEIVAARNG---SPLVIGIG-DGENFVASDAPAL 197 (215)
T ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhccceEEEEEEeCCCCEEEEEECC---CCcEEEEc-CCeEEEEECHHHH
Confidence 8999999999998764 378999999999999999999999 3589999994 99999998 5789999999998
Q ss_pred C
Q 043065 88 F 88 (89)
Q Consensus 88 ~ 88 (89)
.
T Consensus 198 ~ 198 (215)
T cd00714 198 L 198 (215)
T ss_pred H
Confidence 5
No 21
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=99.81 E-value=3.7e-20 Score=143.58 Aligned_cols=79 Identities=30% Similarity=0.474 Sum_probs=69.0
Q ss_pred Cccccce-------eeccCChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEe--CCEEEEEEcCCCCccEEEEE
Q 043065 2 LKNVQPF-------VAGYSSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVT--EDKLVAVRDPYGFMPLVMGR 72 (89)
Q Consensus 2 ~~n~qp~-------~~~~~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~--~~~l~~~rD~~G~rPL~~g~ 72 (89)
|+|++.| .+.+.||+|+|++++++++ .+++++|+|+|||+++| .++++++||++|+||||||.
T Consensus 78 IyN~~eLr~~L~~~~f~t~sD~Evil~ly~~~G--------~~~~~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyyg~ 149 (578)
T PLN02549 78 IYNHKELREKLKLHKFRTGSDCEVIAHLYEEHG--------EEFVDMLDGMFSFVLLDTRDNSFIAARDHIGITPLYIGW 149 (578)
T ss_pred EEcHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH--------HHHHHhCCCceEEEEEECCCCEEEEEECCCCCCCeEEEE
Confidence 5566554 3456899999999999998 78999999999999999 47899999999999999998
Q ss_pred ecCCeEEEEecccccC
Q 043065 73 RSNGALVFASETCALF 88 (89)
Q Consensus 73 ~~~~~~~~aSE~~al~ 88 (89)
..++.++||||.++|.
T Consensus 150 ~~~g~~~fASE~KaL~ 165 (578)
T PLN02549 150 GLDGSVWFASEMKALC 165 (578)
T ss_pred ecCCeEEEEecHHHHH
Confidence 7457899999999975
No 22
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.81 E-value=9.9e-20 Score=139.54 Aligned_cols=78 Identities=40% Similarity=0.557 Sum_probs=71.1
Q ss_pred eccCChHHHHHHHHHhhcC-CChHHHHHHHHhhccCceEEEEEeCCEEEEEEcCCCCccEEEEEecCCeEEEEecccccC
Q 043065 10 AGYSSDTVVVLHLIPISKA-RPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCALF 88 (89)
Q Consensus 10 ~~~~~DsEvi~~ll~~~~~-~~~~~a~~~~~~~l~G~fa~~i~~~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al~ 88 (89)
+++.||||+|++++..+.. .++.+++++++++++|+||++++++++++++||++|.|||+||.. ++.++||||.+||.
T Consensus 151 f~s~sDSEVI~~Li~~~~~~~~~~eai~~~~~~l~G~yA~vi~d~~~L~aaRDp~GirPL~~g~~-~~~~~vASE~~AL~ 229 (510)
T PRK07847 151 AGATTDTDLVTALLAHGAADSTLEQAALELLPTVRGAFCLVFMDEHTLYAARDPQGVRPLVLGRL-ERGWVVASETAALD 229 (510)
T ss_pred CCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhhhheEEEEEECCEEEEEECCCCCCCcEEEEE-CCeEEEEechHHHh
Confidence 3458999999999998763 489999999999999999999999999999999999999999998 57899999999875
No 23
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=99.80 E-value=9.8e-20 Score=127.32 Aligned_cols=86 Identities=20% Similarity=0.373 Sum_probs=68.2
Q ss_pred Cccccceee-----ccCChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEe--CCEEEEEEcCCCCccEEEEEec
Q 043065 2 LKNVQPFVA-----GYSSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVT--EDKLVAVRDPYGFMPLVMGRRS 74 (89)
Q Consensus 2 ~~n~qp~~~-----~~~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~--~~~l~~~rD~~G~rPL~~g~~~ 74 (89)
|+|++.|+. ++.+|+|+|+++++.+.+.... ...+++++|+|.|||++|| .++++++||++|.+|||||...
T Consensus 81 IyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y-~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYyg~~~ 159 (224)
T cd01910 81 LDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPY-PADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYWGIAA 159 (224)
T ss_pred EcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCc-cHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceEEEEeC
Confidence 556555432 5689999999999987211100 0136899999999999999 4899999999999999999875
Q ss_pred CCeEEEEecccccC
Q 043065 75 NGALVFASETCALF 88 (89)
Q Consensus 75 ~~~~~~aSE~~al~ 88 (89)
++.++||||.++|.
T Consensus 160 dG~l~FASElkaL~ 173 (224)
T cd01910 160 DGSVVFSDDVELVK 173 (224)
T ss_pred CCEEEEEeCHHHhh
Confidence 68999999999875
No 24
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=99.80 E-value=3.8e-19 Score=122.90 Aligned_cols=68 Identities=40% Similarity=0.595 Sum_probs=63.0
Q ss_pred cCChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEeC--CEEEEEEcCCCCccEEEEEecCCeEEEEecccccC
Q 043065 12 YSSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTE--DKLVAVRDPYGFMPLVMGRRSNGALVFASETCALF 88 (89)
Q Consensus 12 ~~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~~--~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al~ 88 (89)
+.||+|++++++.+++ .+++++|+|+||++++|+ ++++++||++|.|||||+.. ++.++||||.++|.
T Consensus 95 ~~sD~e~l~~~~~~~g--------~~~~~~l~G~fa~vi~d~~~~~l~~~rD~~G~~pLy~~~~-~~~~~~aSe~~~l~ 164 (220)
T cd00712 95 THSDTEVILHLYEEWG--------EDCLERLNGMFAFALWDKRKRRLFLARDRFGIKPLYYGRD-GGGLAFASELKALL 164 (220)
T ss_pred CCChHHHHHHHHHHHh--------HHHHHHhhheEEEEEEECCCCEEEEEECCCCCEeeEEEEE-CCEEEEEcchHHHH
Confidence 3789999999999998 789999999999999994 89999999999999999998 57899999999875
No 25
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=99.80 E-value=1.4e-19 Score=139.79 Aligned_cols=71 Identities=34% Similarity=0.522 Sum_probs=64.9
Q ss_pred eccCChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEe--CCEEEEEEcCCCCccEEEEEecCCeEEEEeccccc
Q 043065 10 AGYSSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVT--EDKLVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87 (89)
Q Consensus 10 ~~~~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~--~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al 87 (89)
+++.||+|+|++++++++ .+++++|+|+|||+++| .++++++||++|+|||||+..+++.++||||.++|
T Consensus 94 f~t~sD~Evil~ly~~~G--------~~~~~~L~G~FAf~i~D~~~~~l~laRD~~GikPLyy~~~~~~~~~faSE~kaL 165 (554)
T PRK09431 94 FQTGSDCEVILALYQEKG--------PDFLDDLDGMFAFALYDSEKDAYLIARDPIGIIPLYYGYDEHGNLYFASEMKAL 165 (554)
T ss_pred cCCCCHHHHHHHHHHHHH--------HHHHHhCCCceEEEEEECCCCEEEEEeCCCCCcceEEEEeCCCeEEEecchHHH
Confidence 356999999999999998 78999999999999999 38899999999999999999844789999999987
Q ss_pred C
Q 043065 88 F 88 (89)
Q Consensus 88 ~ 88 (89)
+
T Consensus 166 ~ 166 (554)
T PRK09431 166 V 166 (554)
T ss_pred H
Confidence 4
No 26
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=99.79 E-value=3.4e-19 Score=138.38 Aligned_cols=71 Identities=30% Similarity=0.465 Sum_probs=64.2
Q ss_pred eccCChHHHHHHHHHhhcCCChHHHHH-HHHhhccCceEEEEEe--CCEEEEEEcCCCCccEEEEEecCCeEEEEecccc
Q 043065 10 AGYSSDTVVVLHLIPISKARPFFLRIL-DVCEKLEGAYSMVFVT--EDKLVAVRDPYGFMPLVMGRRSNGALVFASETCA 86 (89)
Q Consensus 10 ~~~~~DsEvi~~ll~~~~~~~~~~a~~-~~~~~l~G~fa~~i~~--~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~a 86 (89)
+.+.||+|+|++++++++ . +++++|+|+|||++|| .++++++||++|+|||||+...++.++||||.++
T Consensus 100 f~t~sD~Evil~ly~~~G--------~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyy~~~~~g~~~faSE~ka 171 (586)
T PTZ00077 100 FSSNSDCEIIGHLYKEYG--------PKDFWNHLDGMFATVIYDMKTNTFFAARDHIGIIPLYIGYAKDGSIWFSSELKA 171 (586)
T ss_pred CCCCCHHHHHHHHHHHhC--------HHHHHHhcCCCEEEEEEECCCCEEEEEECCCCCcCeEEEEecCCeEEEEecHHH
Confidence 356899999999999998 6 8999999999999999 4799999999999999999754578999999998
Q ss_pred cC
Q 043065 87 LF 88 (89)
Q Consensus 87 l~ 88 (89)
|.
T Consensus 172 L~ 173 (586)
T PTZ00077 172 LH 173 (586)
T ss_pred HH
Confidence 75
No 27
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.78 E-value=2.4e-18 Score=116.99 Aligned_cols=76 Identities=37% Similarity=0.612 Sum_probs=68.6
Q ss_pred CChHHHHHHHHHhhcC-CChHHHHHHHHhhccCceEEEEEeC--CEEEEEEcCCCCccEEEEEecCCeEEEEecccccC
Q 043065 13 SSDTVVVLHLIPISKA-RPFFLRILDVCEKLEGAYSMVFVTE--DKLVAVRDPYGFMPLVMGRRSNGALVFASETCALF 88 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~~-~~~~~a~~~~~~~l~G~fa~~i~~~--~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al~ 88 (89)
.||||++++++.+++. ..+.+++.+++++++|+|+++++|+ ++++++||+.|.|||+|+...++.++||||..++.
T Consensus 126 ~tDse~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~d~~~~~l~~~rd~~G~~pL~~~~~~~~~~~~aSe~~~~~ 204 (220)
T cd00352 126 ESDSEVILHLLERLGREGGLFEAVEDALKRLDGPFAFALWDGKPDRLFAARDRFGIRPLYYGITKDGGLVFASEPKALL 204 (220)
T ss_pred CCHHHHHHHHHHHHhccCCHHHHHHHHHHhCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEeCCCeEEEEecHHHHh
Confidence 7999999999999874 3478899999999999999999996 99999999999999999998336899999998763
No 28
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=99.76 E-value=1.4e-18 Score=134.86 Aligned_cols=70 Identities=27% Similarity=0.368 Sum_probs=64.2
Q ss_pred eccCChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEeC--CEEEEEEcCCCCccEEEEEecCCeEEEEeccccc
Q 043065 10 AGYSSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTE--DKLVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87 (89)
Q Consensus 10 ~~~~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~~--~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al 87 (89)
+.+.||+|++++++.+++ .+++++|+|+|||++||+ ++++++||++|.|||||+.. ++.++||||.++|
T Consensus 95 f~~~sD~Evil~~y~~~G--------~~~~~~l~G~fa~~i~d~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaL 165 (589)
T TIGR03104 95 FFSDGDTEVILKAYHAWG--------RDCVSRFNGMFAFAIWERDSGRLLLARDRLGIKPLYYAED-AGRLRFASSLPAL 165 (589)
T ss_pred ccCCCHHHHHHHHHHHHH--------HHHHHHhhcceEEEEEeCCCCEEEEEecCCCCCCeEEEEe-CCEEEEEeCHHHH
Confidence 345899999999999998 889999999999999993 69999999999999999998 5799999999987
Q ss_pred C
Q 043065 88 F 88 (89)
Q Consensus 88 ~ 88 (89)
+
T Consensus 166 l 166 (589)
T TIGR03104 166 L 166 (589)
T ss_pred H
Confidence 5
No 29
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.75 E-value=7.2e-18 Score=109.31 Aligned_cols=62 Identities=35% Similarity=0.590 Sum_probs=57.9
Q ss_pred CChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEe--CCEEEEEEcCCCCccEEEEEecCCeEEEEec
Q 043065 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVT--EDKLVAVRDPYGFMPLVMGRRSNGALVFASE 83 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~--~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE 83 (89)
.||||++++++.+++ .+++++++|.|++++++ +++++++||++|.|||+++.. ++.++||||
T Consensus 70 ~tDSEii~~li~~~g--------~~~l~~l~G~~a~~~~~~~~~~l~~~rd~~g~~PL~~~~~-~~~~~~ASE 133 (133)
T PF13522_consen 70 DTDSEIIAALIHRWG--------EEALERLDGAFAFAVYDKTPNKLFLARDPLGIRPLYYGRD-GDGYVFASE 133 (133)
T ss_pred CCHHHHHHHHHHHHH--------HHHHHHhcCceEEEEEEcCCCEEEEEEcCCCCCCEEEEEc-CCEEEEEeC
Confidence 899999999997777 77889999999999998 689999999999999999999 589999998
No 30
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=99.75 E-value=3.1e-18 Score=129.26 Aligned_cols=69 Identities=33% Similarity=0.510 Sum_probs=64.0
Q ss_pred ccCChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEeC--CEEEEEEcCCCCccEEEEEecCCeEEEEecccccC
Q 043065 11 GYSSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTE--DKLVAVRDPYGFMPLVMGRRSNGALVFASETCALF 88 (89)
Q Consensus 11 ~~~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~~--~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al~ 88 (89)
.+.||+|++++++++|+ .+++++|+|+||+++||+ ++++++||++|.|||||+.. ++.++||||.++|.
T Consensus 94 ~~~~D~e~il~~y~~~g--------~~~~~~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaL~ 164 (467)
T TIGR01536 94 QTDSDTEVILHLYEEWG--------EECVDRLDGMFAFALWDSKKGELFLARDRFGIKPLYYAYD-GGQLYFASEIKALL 164 (467)
T ss_pred CCCCHHHHHHHHHHHHH--------HHHHHHcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEEE-CCEEEEEecHHHHH
Confidence 45899999999999998 889999999999999994 89999999999999999998 57999999998874
No 31
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=99.75 E-value=3.7e-18 Score=131.64 Aligned_cols=71 Identities=37% Similarity=0.483 Sum_probs=65.5
Q ss_pred eeccCChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEe--CCEEEEEEcCCCCccEEEEEecCCeEEEEecccc
Q 043065 9 VAGYSSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVT--EDKLVAVRDPYGFMPLVMGRRSNGALVFASETCA 86 (89)
Q Consensus 9 ~~~~~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~--~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~a 86 (89)
.+++.+|||+|++++++++ .+++++|+|.|||++|| +++++++||++|+|||||+.. ++.++||||.+|
T Consensus 93 ~f~t~sDtEvil~~y~~~g--------~~~~~~l~G~fAfai~d~~~~~l~laRD~~GikPLyy~~~-~~~l~faSE~Ka 163 (542)
T COG0367 93 EFRTYSDTEVILTLYEEWG--------EDCVEHLNGMFAFAIYDETRQKLFLARDPFGVKPLYYTSK-NENLAFASEIKA 163 (542)
T ss_pred eeccccchHHHHHHHHHHH--------HHHHHHhccceEEEEEECCCCEEEEEecCCCccccEEEec-CCceEEEechhh
Confidence 4566999999999999998 77999999999999999 578999999999999999999 467999999999
Q ss_pred cC
Q 043065 87 LF 88 (89)
Q Consensus 87 l~ 88 (89)
|+
T Consensus 164 l~ 165 (542)
T COG0367 164 LL 165 (542)
T ss_pred hh
Confidence 86
No 32
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.73 E-value=1.6e-17 Score=128.80 Aligned_cols=72 Identities=31% Similarity=0.478 Sum_probs=65.3
Q ss_pred CChHHHHHHHHHhhcC--CChHHHHHHHHhhccCceEEEEEe---CCEEEEEEcCCCCccEEEEEecCCeEEEEeccccc
Q 043065 13 SSDTVVVLHLIPISKA--RPFFLRILDVCEKLEGAYSMVFVT---EDKLVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~~--~~~~~a~~~~~~~l~G~fa~~i~~---~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al 87 (89)
.||||++++++.+++. .++.+|+.+++++|+|+|||++++ +++++++||+ ||||||.. ++.++||||.+||
T Consensus 122 ~tDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~~a~~i~~~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al 197 (607)
T TIGR01135 122 DTDTEVIAHLIEEYLREGGDLLEAVQKALKQLRGAYALAVLHADHPETLVAARSG---SPLIVGLG-DGENFVASDVTAL 197 (607)
T ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCceEEEEEecCCCCEEEEEECC---CceEEEEC-CCeEEEEEChHHH
Confidence 7999999999998764 589999999999999999999999 2569999996 99999997 5789999999987
Q ss_pred C
Q 043065 88 F 88 (89)
Q Consensus 88 ~ 88 (89)
.
T Consensus 198 ~ 198 (607)
T TIGR01135 198 L 198 (607)
T ss_pred H
Confidence 5
No 33
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=99.72 E-value=2.3e-17 Score=127.80 Aligned_cols=72 Identities=33% Similarity=0.530 Sum_probs=65.3
Q ss_pred CChHHHHHHHHHhhcC--CChHHHHHHHHhhccCceEEEEEe---CCEEEEEEcCCCCccEEEEEecCCeEEEEeccccc
Q 043065 13 SSDTVVVLHLIPISKA--RPFFLRILDVCEKLEGAYSMVFVT---EDKLVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~~--~~~~~a~~~~~~~l~G~fa~~i~~---~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al 87 (89)
.||||++++++.++.. .++.+++++++++|+|.|||+++| +++++++||+ ||||||.. ++.++||||.++|
T Consensus 123 ~sDsEvi~~l~~~~~~~g~~~~~a~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al 198 (604)
T PRK00331 123 ETDTEVIAHLIEEELKEGGDLLEAVRKALKRLEGAYALAVIDKDEPDTIVAARNG---SPLVIGLG-EGENFLASDALAL 198 (604)
T ss_pred CCHHHHHHHHHHHHHhhCCCHHHHHHHHHHhccCeeEEEEEecCCCCEEEEEECC---CceEEEEc-CCeEEEEECHHHH
Confidence 8999999999998742 489999999999999999999999 4799999996 99999998 5789999999987
Q ss_pred C
Q 043065 88 F 88 (89)
Q Consensus 88 ~ 88 (89)
.
T Consensus 199 ~ 199 (604)
T PRK00331 199 L 199 (604)
T ss_pred H
Confidence 4
No 34
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=99.72 E-value=2e-17 Score=128.77 Aligned_cols=70 Identities=27% Similarity=0.384 Sum_probs=63.3
Q ss_pred ccCChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEe--CCEEEEEEcCCCCccEEEEEecCCeEEEEecccccC
Q 043065 11 GYSSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVT--EDKLVAVRDPYGFMPLVMGRRSNGALVFASETCALF 88 (89)
Q Consensus 11 ~~~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~--~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al~ 88 (89)
.+.||+|++++++++++ .+++++|+|+|||++|| .++++++||++|.+||||+...++.++||||.++|+
T Consensus 96 ~~~sD~Evi~~~~~~~g--------~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~PLyy~~~~~~~~~faSe~~al~ 167 (628)
T TIGR03108 96 RTRSDTEVIVHAWEEWG--------EACVERFRGMFAFALWDRNQETLFLARDRLGIKPLYYALLADGWFIFGSELKALT 167 (628)
T ss_pred CCCChHHHHHHHHHHHH--------HHHHHHcCCCEEEEEEECCCCEEEEEECCCCCcceEEEEeCCCEEEEEecHHHHH
Confidence 45899999999999998 88999999999999999 478999999999999999976446799999998874
No 35
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.71 E-value=3.3e-17 Score=127.98 Aligned_cols=72 Identities=24% Similarity=0.454 Sum_probs=64.7
Q ss_pred CChHHHHHHHHHhhc--CCChHHHHHHHHhhccCceEEEEEe---CCEEEEEEcCCCCccEEEEEecCCeEEEEeccccc
Q 043065 13 SSDTVVVLHLIPISK--ARPFFLRILDVCEKLEGAYSMVFVT---EDKLVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~--~~~~~~a~~~~~~~l~G~fa~~i~~---~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al 87 (89)
.||||+|++++.+.. +.++.+++.+++++|+|+||+++++ +++++++||+ |||+||.. ++.++||||.+||
T Consensus 153 ~tDsEvi~~li~~~~~~g~~~~~a~~~~~~~l~G~~a~~~~~~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al 228 (640)
T PTZ00295 153 ETDSEVIANLIGLELDQGEDFQEAVKSAISRLQGTWGLCIIHKDNPDSLIVARNG---SPLLVGIG-DDSIYVASEPSAF 228 (640)
T ss_pred CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhceEEEEEeCCCCEEEEEECC---CceEEEEc-CceEEEEechHHH
Confidence 999999999998653 2478999999999999999999998 5799999997 99999998 5689999999987
Q ss_pred C
Q 043065 88 F 88 (89)
Q Consensus 88 ~ 88 (89)
.
T Consensus 229 ~ 229 (640)
T PTZ00295 229 A 229 (640)
T ss_pred H
Confidence 4
No 36
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.68 E-value=1.8e-16 Score=124.85 Aligned_cols=73 Identities=29% Similarity=0.517 Sum_probs=63.7
Q ss_pred CChHHHHHHHHHhhcC--------CChHHHHHHHHhhccCceEEEEEe---CCEEEEEEcCCCCccEEEEEec--C----
Q 043065 13 SSDTVVVLHLIPISKA--------RPFFLRILDVCEKLEGAYSMVFVT---EDKLVAVRDPYGFMPLVMGRRS--N---- 75 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~~--------~~~~~a~~~~~~~l~G~fa~~i~~---~~~l~~~rD~~G~rPL~~g~~~--~---- 75 (89)
+||||||+|++++... .++.+++++++++|+|+||+++++ +++++++||+ |||++|..+ +
T Consensus 145 ~tDtEvi~~li~~~~~~~~~~~~~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~~~~~~~~~ 221 (680)
T PLN02981 145 DTDTEVIPKLAKFVFDKLNEEEGDVTFSQVVMEVMRQLEGAYALIFKSPHYPNELVACKRG---SPLLLGVKELPEEKNS 221 (680)
T ss_pred CCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHhccCccceEEEecCCCCeEEEEecC---CceEEEecCccccccc
Confidence 9999999999765321 288999999999999999999998 7999999997 999999973 1
Q ss_pred -----------------CeEEEEecccccC
Q 043065 76 -----------------GALVFASETCALF 88 (89)
Q Consensus 76 -----------------~~~~~aSE~~al~ 88 (89)
+.+++|||.+||.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~aSe~~al~ 251 (680)
T PLN02981 222 SAVFTSEGFLTKNRDKPKEFFLASDASAVV 251 (680)
T ss_pred ccccccccccccccccCCcEEEEeCHHHHH
Confidence 3699999999985
No 37
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.67 E-value=2.7e-16 Score=123.72 Aligned_cols=73 Identities=26% Similarity=0.372 Sum_probs=64.3
Q ss_pred CChHHHHHHHHHhhc----CCChHHHHHHHHhhccCceEEEEEe---CCEEEEEEcCCCCccEEEEEecC----------
Q 043065 13 SSDTVVVLHLIPISK----ARPFFLRILDVCEKLEGAYSMVFVT---EDKLVAVRDPYGFMPLVMGRRSN---------- 75 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~----~~~~~~a~~~~~~~l~G~fa~~i~~---~~~l~~~rD~~G~rPL~~g~~~~---------- 75 (89)
+||||||+|+++... ..++.+++.+++++|+|+|||++++ +++++++||+ |||++|..++
T Consensus 155 ~tDtEvi~~li~~~~~~~g~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~~~~~~~~~~~~~ 231 (670)
T PTZ00394 155 DTDTEVISVLSEYLYTRKGIHNFADLALEVSRMVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGCVMKLQ 231 (670)
T ss_pred CChHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHccCceEEEEEecCCCCEEEEEEcC---CceEEEeccccccccccccc
Confidence 999999999987543 2389999999999999999999986 7999999998 9999999741
Q ss_pred ----------CeEEEEecccccC
Q 043065 76 ----------GALVFASETCALF 88 (89)
Q Consensus 76 ----------~~~~~aSE~~al~ 88 (89)
+.+++|||..||.
T Consensus 232 ~~~~~~~~~~~~~~~aSd~~a~~ 254 (670)
T PTZ00394 232 TYDLTDLSGPLEVFFSSDVNSFA 254 (670)
T ss_pred cccccccCCCCcEEEEeChHHHH
Confidence 4799999999875
No 38
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=8.7e-17 Score=124.74 Aligned_cols=83 Identities=30% Similarity=0.471 Sum_probs=73.7
Q ss_pred Ccccccee---------eccCChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEe---CCEEEEEEcCCCCccEE
Q 043065 2 LKNVQPFV---------AGYSSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVT---EDKLVAVRDPYGFMPLV 69 (89)
Q Consensus 2 ~~n~qp~~---------~~~~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~---~~~l~~~rD~~G~rPL~ 69 (89)
|+||++|+ +.++||||||+||+++..++.+++|+++++++|+|+||+++++ |++++++|.. .||+
T Consensus 102 IeN~~eLr~eL~~~G~~F~S~TDTEVi~hLi~~~~~~~~~~a~~~~l~~l~Gsyal~~~~~~~p~~i~~ar~~---sPL~ 178 (597)
T COG0449 102 IENFAELKEELEAKGYVFKSDTDTEVIAHLLEEIYDTSLLEAVKKVLKRLEGSYALLCTHSDFPDELVAARKG---SPLV 178 (597)
T ss_pred hhCHHHHHHHHHhcCCEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHhcceeEEEEEecCCCCeEEEEcCC---CCeE
Confidence 67776664 4569999999999999886669999999999999999999998 6899999996 9999
Q ss_pred EEEecCCeEEEEecccccC
Q 043065 70 MGRRSNGALVFASETCALF 88 (89)
Q Consensus 70 ~g~~~~~~~~~aSE~~al~ 88 (89)
+|.. ++..++||+..|++
T Consensus 179 iG~g-~~e~f~aSD~~a~l 196 (597)
T COG0449 179 IGVG-EGENFLASDVSALL 196 (597)
T ss_pred EEec-CCcceEecChhhhh
Confidence 9998 57889999998876
No 39
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=99.65 E-value=1.7e-15 Score=113.76 Aligned_cols=83 Identities=18% Similarity=0.305 Sum_probs=72.7
Q ss_pred ccceeeccCChHHHHHHHHHhhc--CCChHHHHH-------------------------HHHhhccCceEEEEEeCCEEE
Q 043065 5 VQPFVAGYSSDTVVVLHLIPISK--ARPFFLRIL-------------------------DVCEKLEGAYSMVFVTEDKLV 57 (89)
Q Consensus 5 ~qp~~~~~~~DsEvi~~ll~~~~--~~~~~~a~~-------------------------~~~~~l~G~fa~~i~~~~~l~ 57 (89)
.-|+.....||||++.++|+... +.++.+|++ .+++.++|+||+++.+++.++
T Consensus 262 ~~pi~~~~~SDS~~ld~~le~l~~~g~~l~~A~~mliPeaw~~~~~m~~~~r~fYey~~~~me~~dGp~aiv~~dg~~i~ 341 (413)
T cd00713 262 LKPIINPGGSDSASLDNVLELLVRSGRSLPEAMMMLIPEAWQNNPTMDPELRAFYEYHSSLMEPWDGPAAIAFTDGRQVG 341 (413)
T ss_pred cCCcCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHhCChhhccCccCCHHHHHHHHHHHHHhccCCCcEEEEEEeCCEEE
Confidence 45777778999999999997643 458888887 778999999999999999999
Q ss_pred EEEcCCCCccEEEEEecCCeEEEEeccccc
Q 043065 58 AVRDPYGFMPLVMGRRSNGALVFASETCAL 87 (89)
Q Consensus 58 ~~rD~~G~rPL~~g~~~~~~~~~aSE~~al 87 (89)
++||+.|.|||+|+..+++.+++|||.+++
T Consensus 342 a~rDrnGlRPl~~~~t~d~~~v~ASE~gal 371 (413)
T cd00713 342 ASLDRNGLRPARYVITKDGLLIMSSEVGVV 371 (413)
T ss_pred EEeCCCCCcceEEEEECCCEEEEEeCCccc
Confidence 999999999999998865579999999987
No 40
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=99.56 E-value=1.5e-15 Score=114.35 Aligned_cols=73 Identities=37% Similarity=0.533 Sum_probs=65.5
Q ss_pred eccCChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEe--CCEEEEEEcCCCCccEEEEEecCCeEEEEeccccc
Q 043065 10 AGYSSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVT--EDKLVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87 (89)
Q Consensus 10 ~~~~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~--~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al 87 (89)
+++.+|.|+|++++.+++ ..+++..|+|.|||+++| .++++++||++|++|||+|.+.++.++||||.+.|
T Consensus 92 ~~T~sDcEvIi~lY~khg-------~~~~~~~LDG~Fafvl~d~~~~kv~~aRDpiGv~~lY~g~~~~gs~~~aSe~k~l 164 (543)
T KOG0571|consen 92 FQTGSDCEVIIHLYEKHG-------GEQAICMLDGVFAFVLLDTKDDKVVAARDPIGVTPLYYGWDSDGSVYFASEMKCL 164 (543)
T ss_pred cccCCCceeeeehHhhcC-------chhHHHHhhhheEEEEecCCCCeEEeccCCcCceeeEEEecCCCcEEEeeehhhh
Confidence 345899999999999995 278999999999999999 46899999999999999999987899999999987
Q ss_pred CC
Q 043065 88 FD 89 (89)
Q Consensus 88 ~~ 89 (89)
.+
T Consensus 165 ~d 166 (543)
T KOG0571|consen 165 ED 166 (543)
T ss_pred hh
Confidence 53
No 41
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=99.49 E-value=1.4e-13 Score=102.13 Aligned_cols=81 Identities=27% Similarity=0.414 Sum_probs=57.5
Q ss_pred cccceeeccCChHHHHHHHHHhhcC---------------------------CChHHHHHHHHhhccCceEEEEEeCCEE
Q 043065 4 NVQPFVAGYSSDTVVVLHLIPISKA---------------------------RPFFLRILDVCEKLEGAYSMVFVTEDKL 56 (89)
Q Consensus 4 n~qp~~~~~~~DsEvi~~ll~~~~~---------------------------~~~~~a~~~~~~~l~G~fa~~i~~~~~l 56 (89)
...|+.....||||++.++++.... .++.+.+..+++.++|+|++++.+.+.+
T Consensus 254 ~~~pi~~~~~SDS~~l~~~le~l~~~g~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~~~~~~~~~dGPaai~~~~g~~~ 333 (361)
T PF00310_consen 254 ELLPIVNPGGSDSEVLDNLLELLLRRGRSLEEAMMMLIPPAWENDEDMSPEKRAFYEYHASLMEPWDGPAAIIFTDGNGV 333 (361)
T ss_dssp CC-SSS-TTS-HHHHHHHHHHHHHHTTSSHHHHHHHHSGG--TTSCCSTHHHHHHHHHHHHHHCC--CCEEEEEECSSEE
T ss_pred hcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHhhCCcccccCccCCHHHHHHHHHHHHhhccCCCceEEEEEeCCEE
Confidence 4456666669999999998876421 1244666777899999999999998899
Q ss_pred EEEEcCCCCccEEEEEecCCeEEEEecc
Q 043065 57 VAVRDPYGFMPLVMGRRSNGALVFASET 84 (89)
Q Consensus 57 ~~~rD~~G~rPL~~g~~~~~~~~~aSE~ 84 (89)
+++||+.|.||+.|+.++++.+++|||.
T Consensus 334 ~a~~Dr~GLRP~~~~~~~d~~~v~aSE~ 361 (361)
T PF00310_consen 334 GAFLDRNGLRPLRYGITEDGLVVLASEA 361 (361)
T ss_dssp EEEE-TT--S--EEEEETTCEEEEESST
T ss_pred EEEECCCCCcceEEEEECCCEEEEEeCC
Confidence 9999999999999999966789999995
No 42
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.41 E-value=2.1e-12 Score=91.32 Aligned_cols=77 Identities=19% Similarity=0.170 Sum_probs=64.4
Q ss_pred ccCChHHHHHHHHHhhcC---CC----hHHHHHHHHhhcc-----CceEEEEEeCCEEEEEEcCCCCccEEEEEec----
Q 043065 11 GYSSDTVVVLHLIPISKA---RP----FFLRILDVCEKLE-----GAYSMVFVTEDKLVAVRDPYGFMPLVMGRRS---- 74 (89)
Q Consensus 11 ~~~~DsEvi~~ll~~~~~---~~----~~~a~~~~~~~l~-----G~fa~~i~~~~~l~~~rD~~G~rPL~~g~~~---- 74 (89)
...||||++.+++.+... .+ +.+++.+++++|+ |.|++++.++++++++||+. .+||||+..+
T Consensus 135 ~~~tDSE~~~~li~~~l~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~n~~~~dg~~l~a~r~~~-~~~L~~~~~~~~~~ 213 (257)
T cd01908 135 VGTTDSELAFALLLSRLLERDPLDPAELLDAILQTLRELAALAPPGRLNLLLSDGEYLIATRYAS-APSLYYLTRRAPFG 213 (257)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhCcCeEEEEEEECCCEEEEEEeCC-CCceEEEecccccc
Confidence 348999999999987642 22 6899999999999 78888888899999999987 7899999863
Q ss_pred -------------CCeEEEEecccccC
Q 043065 75 -------------NGALVFASETCALF 88 (89)
Q Consensus 75 -------------~~~~~~aSE~~al~ 88 (89)
++.++||||..+..
T Consensus 214 ~~~~~~~~~~~~~~~~~vvaSE~l~~~ 240 (257)
T cd01908 214 CARLLFRSVTTPNDDGVVVASEPLTDD 240 (257)
T ss_pred ccccccccccCCCCCEEEEEeCCCCCC
Confidence 36899999998753
No 43
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.41 E-value=1.3e-12 Score=92.63 Aligned_cols=69 Identities=22% Similarity=0.190 Sum_probs=61.0
Q ss_pred cCChHHHHHHHHHhhc-C---CChHHHHHHHHhhccCc-------eEEEEEeCCEEEEEEcCCCCccEEEEEecCCeEEE
Q 043065 12 YSSDTVVVLHLIPISK-A---RPFFLRILDVCEKLEGA-------YSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVF 80 (89)
Q Consensus 12 ~~~DsEvi~~ll~~~~-~---~~~~~a~~~~~~~l~G~-------fa~~i~~~~~l~~~rD~~G~rPL~~g~~~~~~~~~ 80 (89)
..||||++.+++.+.. + .++.+++.++++.+.|. |++++.|++++++.||+ .||||+.. ++.++|
T Consensus 144 g~TDSE~i~~li~~~~~~~~~~~~~~ai~~~~~~l~~~~~~~~~~~n~~~sdg~~l~a~R~~---~~L~~~~~-~~~~vv 219 (251)
T TIGR03442 144 GSTDSAHLFALLLNRLLENDPRALEEALAEVLLILFSAAAAPRVRLNLLLTDGSRLVATRWA---DTLYWLKD-PEGVIV 219 (251)
T ss_pred CCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhCcccceEEEEEcCCEEEEEEeC---CeEEEEEc-CCEEEE
Confidence 4899999999988764 3 47889999999999988 99999999999999998 49999998 468999
Q ss_pred Eecc
Q 043065 81 ASET 84 (89)
Q Consensus 81 aSE~ 84 (89)
|||+
T Consensus 220 ASEp 223 (251)
T TIGR03442 220 ASEP 223 (251)
T ss_pred EeCC
Confidence 9997
No 44
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.20 E-value=9.7e-11 Score=98.06 Aligned_cols=84 Identities=18% Similarity=0.228 Sum_probs=64.9
Q ss_pred cccceeeccCChHHHHHHHHHhhc--CCChHHH---------------------HHH----HHhhccCceEEEEEeCCEE
Q 043065 4 NVQPFVAGYSSDTVVVLHLIPISK--ARPFFLR---------------------ILD----VCEKLEGAYSMVFVTEDKL 56 (89)
Q Consensus 4 n~qp~~~~~~~DsEvi~~ll~~~~--~~~~~~a---------------------~~~----~~~~l~G~fa~~i~~~~~l 56 (89)
..-|+.....|||+.+-+.++-.. +.++.+| +-+ .++-++|+||+++.+++.+
T Consensus 271 ~~~Pii~~~~SDSa~lDn~lElL~~~G~sl~~A~~mliPeaW~~~~~m~~~~r~fYeY~s~lmEpwdGpaaiv~~~g~~i 350 (1485)
T PRK11750 271 EAAPFVNETGSDSSSLDNMLELLLAGGMDLFRAMRLLVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGIVMTDGRYA 350 (1485)
T ss_pred hhCCcCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHhCCcccccCCCCCHHHHHHHHHHHhhcccCCCCEEEEEEeCCEE
Confidence 345777778999999877776421 1222222 222 3456899999999999999
Q ss_pred EEEEcCCCCccEEEEEecCCeEEEEeccccc
Q 043065 57 VAVRDPYGFMPLVMGRRSNGALVFASETCAL 87 (89)
Q Consensus 57 ~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al 87 (89)
++.|||.|.|||.|+..+++.+++|||.+++
T Consensus 351 ~A~~DrnGlRPlr~~~~~d~~~i~aSE~g~l 381 (1485)
T PRK11750 351 ACNLDRNGLRPARYVITKDKLITLASEVGIW 381 (1485)
T ss_pred EEecCCCCCccceEEEEcCCEEEEEecceee
Confidence 9999999999999999866679999999986
No 45
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=99.00 E-value=6.3e-10 Score=77.79 Aligned_cols=51 Identities=29% Similarity=0.532 Sum_probs=45.7
Q ss_pred HHHHhhccCceEEEEEe--CCEEEEEEcCCCCccEEEEEecCCeEEEEecccc
Q 043065 36 LDVCEKLEGAYSMVFVT--EDKLVAVRDPYGFMPLVMGRRSNGALVFASETCA 86 (89)
Q Consensus 36 ~~~~~~l~G~fa~~i~~--~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~a 86 (89)
.++++.|+|.|+|+++| .++++++||+.|.-|||||...+|.++||++...
T Consensus 123 dqvv~~L~G~FaFVlyD~~~~tvf~A~d~~G~vpLyWGi~~DGslv~Sdd~~~ 175 (228)
T PF12481_consen 123 DQVVKDLEGSFAFVLYDSKTGTVFVARDSDGSVPLYWGIAADGSLVFSDDLEL 175 (228)
T ss_pred HHHHHhccCceEEEEEecCCCcEEEeecCCCCcceEEEEeCCCCEEEcCCHHH
Confidence 46899999999999999 5899999999999999999998788888887543
No 46
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=98.78 E-value=3.8e-08 Score=74.96 Aligned_cols=64 Identities=23% Similarity=0.282 Sum_probs=52.0
Q ss_pred CChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEe--CCEEEEEEcCCCCccEEEEEecCCeEE
Q 043065 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVT--EDKLVAVRDPYGFMPLVMGRRSNGALV 79 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~--~~~l~~~rD~~G~rPL~~g~~~~~~~~ 79 (89)
..||.+++..+...... ..|.+.++.++|+|++++++ .+++|++||++|+|+|.|+..+.+..+
T Consensus 88 ~~d~~~l~~~l~~~~e~---~~Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~~GRrSLly~~~~~~f~~ 153 (520)
T KOG0573|consen 88 LFDTDILAEELSNLKES---GDILDIIKSLQGPWAFIYYDVRSDKLYFGRDDIGRRSLLYSLDPFNFSL 153 (520)
T ss_pred cchHHHHHHHHhcCCcc---ccHHHHHHhccCCceEEEEEccCcEEEEecccccceeeeEEeccCceeE
Confidence 66999999999876521 22455669999999999999 589999999999999999999654433
No 47
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=98.05 E-value=3.2e-06 Score=65.77 Aligned_cols=61 Identities=26% Similarity=0.398 Sum_probs=51.8
Q ss_pred eccCChHHHHHHHHHhhc-----CCChHHHHHHHHhhccCceEEEEEe---CCEEEEEEcCCCCccEEEEEe
Q 043065 10 AGYSSDTVVVLHLIPISK-----ARPFFLRILDVCEKLEGAYSMVFVT---EDKLVAVRDPYGFMPLVMGRR 73 (89)
Q Consensus 10 ~~~~~DsEvi~~ll~~~~-----~~~~~~a~~~~~~~l~G~fa~~i~~---~~~l~~~rD~~G~rPL~~g~~ 73 (89)
+.++||||++++|+.... +-++.+-+..++++++|+|++++.. |+++.+.|+. .||.+|..
T Consensus 135 FESdTDTEciaKL~~~~~D~~~~~~~F~~lv~~v~k~lEGaFalvfkS~hfP~e~Va~Rrg---SPlliGvK 203 (670)
T KOG1268|consen 135 FESDTDTECIAKLYKHIYDTSPEDLDFHVLVELVLKELEGAFGLLFKSSHFPGEVVAARKG---SPLLIGVK 203 (670)
T ss_pred eecccchHHHHHHHHHHHhhCCCcccHHHHHHHHHHHhhhHHHHHHHhhcCCcceeeeccC---Ccceeeec
Confidence 344999999999887654 2467777888999999999999976 8999999996 99999987
No 48
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=97.71 E-value=0.00018 Score=51.71 Aligned_cols=49 Identities=14% Similarity=0.306 Sum_probs=30.3
Q ss_pred CChHHHHHHHHHhhcCC----------ChHHHHHHHHhhcc--CceEEEEEeCCEEEEEEc
Q 043065 13 SSDTVVVLHLIPISKAR----------PFFLRILDVCEKLE--GAYSMVFVTEDKLVAVRD 61 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~~~----------~~~~a~~~~~~~l~--G~fa~~i~~~~~l~~~rD 61 (89)
.||||.+..++-..... ...+++.++.+.+. |.+.|++.|.+.+++.|+
T Consensus 127 ~TDSE~~F~lll~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~N~~lsDG~~l~a~~~ 187 (271)
T PF13230_consen 127 TTDSEHAFCLLLDQLRDRGPDAPPALEELFEALRELAKEINEYGSLNFLLSDGERLFAHRY 187 (271)
T ss_dssp --HHHHHHHHHHHTTTTT-HH--HHHHHHHHHHHHHHHS-SSSEEEEEEEE-SS-EEEEEE
T ss_pred CcHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhccCeeEEEEEECCceEEEEEc
Confidence 79999998887654321 12334555566655 567787788899999999
No 49
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=97.00 E-value=0.0052 Score=42.29 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=42.2
Q ss_pred CChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEe-CCEEEEEEcCCCCccEEEEEe
Q 043065 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVT-EDKLVAVRDPYGFMPLVMGRR 73 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~-~~~l~~~rD~~G~rPL~~g~~ 73 (89)
-+|+|++..+..+.+ ..++.--+|.|+|.+=+ ++++.+..|+.|..|.++-..
T Consensus 77 ~nd~ElL~~~~~~lG--------~~aLsLAEGdfcffiE~kng~L~l~Tds~G~~pv~lV~~ 130 (201)
T PF09147_consen 77 LNDAELLYTIFTRLG--------NSALSLAEGDFCFFIEDKNGELTLITDSRGFNPVYLVQS 130 (201)
T ss_dssp --HHHHHHHHHHHH---------GGGGGG--SSEEEEEEETTSEEEEEE-SSSSS-EEEEES
T ss_pred eccHHHHHHHHHHhh--------hhhhhhhcCceEEEEecCCCcEEEEecCCCCceEEEEec
Confidence 799999999999888 78899999999999998 589999999999999888776
No 50
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.32 E-value=0.14 Score=44.37 Aligned_cols=82 Identities=23% Similarity=0.245 Sum_probs=58.1
Q ss_pred ccceeeccCChHHHH---HHHHHhhcCCChHHHHH-------------------------HHHhhccCceEEEEEeCCEE
Q 043065 5 VQPFVAGYSSDTVVV---LHLIPISKARPFFLRIL-------------------------DVCEKLEGAYSMVFVTEDKL 56 (89)
Q Consensus 5 ~qp~~~~~~~DsEvi---~~ll~~~~~~~~~~a~~-------------------------~~~~~l~G~fa~~i~~~~~l 56 (89)
.-|+.....|||--+ +.++-+.+..++.||+. -.++-++|+--+.+-|.+.+
T Consensus 345 l~Pive~~~SDSa~lDnv~ElLvrsG~rslpEAvM~mVPEA~~nd~~~~~e~k~fYd~~a~~MEpWDGPALl~FsDGry~ 424 (2142)
T KOG0399|consen 345 LLPIVEEGGSDSAALDNVLELLVRSGGRSLPEAVMMMVPEAWQNDKNMDPEKKAFYDWAACQMEPWDGPALLTFSDGRYC 424 (2142)
T ss_pred hcccccCCCCchhhhhHHHHHHHHhCCCCcHHHHHHhChHHHhcCCCCCHHHHHHHHHHhhcCCCCCCceEEEecCCcee
Confidence 347777777887653 44444444333333332 23567999877777778899
Q ss_pred EEEEcCCCCccEEEEEecCCeEEEEecccc
Q 043065 57 VAVRDPYGFMPLVMGRRSNGALVFASETCA 86 (89)
Q Consensus 57 ~~~rD~~G~rPL~~g~~~~~~~~~aSE~~a 86 (89)
-+.-|+.|.||-=|..+.++.+++|||.-.
T Consensus 425 GA~LDRNGLRP~Ryy~Tsdd~v~~ASEVGv 454 (2142)
T KOG0399|consen 425 GAILDRNGLRPARYYITSDDRVICASEVGV 454 (2142)
T ss_pred eeeeccCCCcceeeEEecCCEEEEeecccc
Confidence 999999999999777776789999999643
No 51
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=95.19 E-value=0.045 Score=41.30 Aligned_cols=46 Identities=28% Similarity=0.357 Sum_probs=33.0
Q ss_pred hhccCceEEEEEeCCEEEEEEcCCCCccEEEEEecCCeEEEEeccc
Q 043065 40 EKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETC 85 (89)
Q Consensus 40 ~~l~G~fa~~i~~~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~ 85 (89)
+-++|+=++++.+..++-+.+|+.|.||.=|-..+++.++++||..
T Consensus 325 epwdGpa~~~f~dgse~gA~ldrngLrp~Ry~~t~d~~vv~~se~g 370 (371)
T COG0067 325 EPWDGPADIVFTDGSEEGAILDRNGLRPARYWITKDGEVVVASEAG 370 (371)
T ss_pred CCccCCcceeEEeeeeeeeeeccCCCCcceEEEecCCEEEEEEecc
Confidence 4466666666667777788888888888866666567788888754
No 52
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=94.67 E-value=0.085 Score=39.86 Aligned_cols=76 Identities=21% Similarity=0.138 Sum_probs=57.9
Q ss_pred CChHHHHHHHHHhhcCC-----ChHHHHH---------HHHhhccCceEEEEEe---CCEEEEEEcCCCCccEEEEEecC
Q 043065 13 SSDTVVVLHLIPISKAR-----PFFLRIL---------DVCEKLEGAYSMVFVT---EDKLVAVRDPYGFMPLVMGRRSN 75 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~~~-----~~~~a~~---------~~~~~l~G~fa~~i~~---~~~l~~~rD~~G~rPL~~g~~~~ 75 (89)
.+|+|++++++.....+ ++..++. .-...+.|+||..+-. ++...+.+|+.+.+|.+-|-. +
T Consensus 254 ~~~~e~~a~l~p~~~~~~sDs~~~dn~lE~l~~~G~~l~~a~~m~~P~aw~~~~~~~~~~~afye~~~~l~epwdGpa-~ 332 (371)
T COG0067 254 PTDGEVLAKLLPILMRGGSDSASLDNALELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPA-D 332 (371)
T ss_pred CccHHHHHHHHHHhcccCCcchhhhHHHHHHHhcCcCchhHHHhcCchhhccCCCCCcceEEEEehhhhCCCCccCCc-c
Confidence 89999999988654321 1111221 2235689999999976 789999999999999999988 5
Q ss_pred CeEEEEecccccCC
Q 043065 76 GALVFASETCALFD 89 (89)
Q Consensus 76 ~~~~~aSE~~al~~ 89 (89)
..+..+||..|+++
T Consensus 333 ~~f~dgse~gA~ld 346 (371)
T COG0067 333 IVFTDGSEEGAILD 346 (371)
T ss_pred eeEEeeeeeeeeec
Confidence 78899999988864
No 53
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=77.85 E-value=0.8 Score=29.97 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=18.8
Q ss_pred cCceEEEEEeCCEEEEEEcCCCCccEE
Q 043065 43 EGAYSMVFVTEDKLVAVRDPYGFMPLV 69 (89)
Q Consensus 43 ~G~fa~~i~~~~~l~~~rD~~G~rPL~ 69 (89)
+|.||++++.+++++-..+ .|.+|||
T Consensus 10 e~~~S~Vv~~~~~i~t~~~-rGv~pL~ 35 (134)
T PF08973_consen 10 EENYSCVVLKDGEIRTSDG-RGVKPLY 35 (134)
T ss_dssp HTT-SEEEESSSEEEEE---STTHHHH
T ss_pred hCCceEEEEeCCEEEEeCC-CChHHHH
Confidence 5789999999888665555 5999986
No 54
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=75.99 E-value=6.9 Score=22.93 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHhhcC--------CChHHHHHHHHhhccCceEEEEE
Q 043065 13 SSDTVVVLHLIPISKA--------RPFFLRILDVCEKLEGAYSMVFV 51 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~~--------~~~~~a~~~~~~~l~G~fa~~i~ 51 (89)
.-|.|+++.++++.+- ..=..|+++.++.++..+++++.
T Consensus 19 s~DGe~ia~~~~~~G~~~iRGSs~rgg~~Alr~~~~~lk~G~~~~it 65 (74)
T PF04028_consen 19 SRDGELIARVLERFGFRTIRGSSSRGGARALREMLRALKEGYSIAIT 65 (74)
T ss_pred CcCHHHHHHHHHHcCCCeEEeCCCCcHHHHHHHHHHHHHCCCeEEEe
Confidence 6799999999999862 23467888999999988888775
No 55
>PHA02679 ORF091 IMV membrane protein; Provisional
Probab=56.81 E-value=4.3 Score=22.48 Aligned_cols=10 Identities=30% Similarity=0.524 Sum_probs=8.1
Q ss_pred CCccccceee
Q 043065 1 MLKNVQPFVA 10 (89)
Q Consensus 1 ~~~n~qp~~~ 10 (89)
||-||||+.-
T Consensus 1 MItnYeP~iL 10 (53)
T PHA02679 1 MVSDYDPAVL 10 (53)
T ss_pred CCcccccHHH
Confidence 7889999853
No 56
>PF06269 DUF1029: Protein of unknown function (DUF1029); InterPro: IPR009372 This entry is represented by Vaccinia virus, A14.5L; it is a family of uncharacterised viral proteins.
Probab=55.15 E-value=4.8 Score=22.33 Aligned_cols=10 Identities=30% Similarity=0.770 Sum_probs=8.0
Q ss_pred CCccccceee
Q 043065 1 MLKNVQPFVA 10 (89)
Q Consensus 1 ~~~n~qp~~~ 10 (89)
||-||||+.-
T Consensus 1 MItnYeP~iL 10 (53)
T PF06269_consen 1 MITNYEPLIL 10 (53)
T ss_pred CCcccccHHH
Confidence 7889999853
No 57
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=51.34 E-value=6.2 Score=25.99 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=16.9
Q ss_pred EcCCCCccEEEEEecCCeEEEEe
Q 043065 60 RDPYGFMPLVMGRRSNGALVFAS 82 (89)
Q Consensus 60 rD~~G~rPL~~g~~~~~~~~~aS 82 (89)
.|++|+|||.|=..+.+.-+|+-
T Consensus 2 ~dk~gRr~llYLl~~~d~~~f~p 24 (148)
T PF08144_consen 2 NDKYGRRVLLYLLSPRDPRYFSP 24 (148)
T ss_pred CCccCceeeeeeccCCCcccCCH
Confidence 68999999999777544555543
No 58
>PF12594 DUF3764: Protein of unknown function (DUF3764); InterPro: IPR022240 This family of proteins is found in bacteria. Proteins in this family are typically between 89 and 101 amino acids in length.
Probab=51.31 E-value=7.1 Score=23.74 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=15.0
Q ss_pred EEEcCCCCccEEEEEecCC
Q 043065 58 AVRDPYGFMPLVMGRRSNG 76 (89)
Q Consensus 58 ~~rD~~G~rPL~~g~~~~~ 76 (89)
..++.+|++|||.|..+++
T Consensus 28 ~~~~e~gIk~lyrGvskdD 46 (86)
T PF12594_consen 28 AMHKEFGIKSLYRGVSKDD 46 (86)
T ss_pred HHHHhcCCeEEEEecccCC
Confidence 3456789999999998654
No 59
>PHA03047 IMV membrane receptor-like protein; Provisional
Probab=49.39 E-value=6.7 Score=21.71 Aligned_cols=10 Identities=30% Similarity=0.770 Sum_probs=7.9
Q ss_pred CCccccceee
Q 043065 1 MLKNVQPFVA 10 (89)
Q Consensus 1 ~~~n~qp~~~ 10 (89)
||-||||+.-
T Consensus 1 MItnYeP~iL 10 (53)
T PHA03047 1 MITNYEPLIL 10 (53)
T ss_pred CCcccccHHH
Confidence 7889999853
No 60
>PHA02724 hydrophobic IMV membrane protein; Provisional
Probab=49.39 E-value=6.7 Score=21.71 Aligned_cols=9 Identities=33% Similarity=0.851 Sum_probs=7.5
Q ss_pred CCcccccee
Q 043065 1 MLKNVQPFV 9 (89)
Q Consensus 1 ~~~n~qp~~ 9 (89)
||-||||+.
T Consensus 1 MItnYeP~i 9 (53)
T PHA02724 1 MISNYEPLL 9 (53)
T ss_pred CCcccccHH
Confidence 788999985
No 61
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.87 E-value=50 Score=23.36 Aligned_cols=40 Identities=13% Similarity=0.103 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHhhc--------CCChHHHHHHHHhhccCceEEEEEe
Q 043065 13 SSDTVVVLHLIPISK--------ARPFFLRILDVCEKLEGAYSMVFVT 52 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~--------~~~~~~a~~~~~~~l~G~fa~~i~~ 52 (89)
.-|.|+++.++++.| +..-..|+.+.++.|+-..++++.-
T Consensus 77 s~DGEliA~~l~kfG~~~IRGSs~Kgg~~Alr~l~k~Lk~G~~i~itp 124 (214)
T COG2121 77 SRDGELIARLLEKFGLRVIRGSSNKGGISALRALLKALKQGKSIAITP 124 (214)
T ss_pred CcCHHHHHHHHHHcCceEEeccCCcchHHHHHHHHHHHhCCCcEEEcC
Confidence 789999999999986 2445678889999999899999863
No 62
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=45.84 E-value=48 Score=24.04 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=36.7
Q ss_pred CCccccceeeccCChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEe-CCEEEEEEcC
Q 043065 1 MLKNVQPFVAGYSSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVT-EDKLVAVRDP 62 (89)
Q Consensus 1 ~~~n~qp~~~~~~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~-~~~l~~~rD~ 62 (89)
||.||=|-.....+|-|..++.++... ...+.+.+.+ .|. +++.. .+.+++..|.
T Consensus 8 qid~YgpWT~t~~prRE~dlQ~lQsrL----ya~L~~~~~~-~gg--l~Ff~RgDN~iavtNG 63 (254)
T PRK02240 8 QIDNYGPWTVTPNPRRESDLQALQSRL----YADLAQQFGA-RDG--YVFFTRFDNMIAVTNG 63 (254)
T ss_pred EecCCCcCcCCCCCccHHHHHHHHHHH----HHHHHHHHHh-CCC--EEEeccCceEEEEcCC
Confidence 588999999999999999999998864 1233344444 333 44444 3556666554
No 63
>cd00836 FERM_C FERM_C domain. The FERM_C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM_C domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAKand JAK, in addition to other proteins involved in signaling. This domain is structuraly similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Probab=40.82 E-value=72 Score=18.65 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=16.3
Q ss_pred EEEEEEcCCCCccEEEEEecCCe
Q 043065 55 KLVAVRDPYGFMPLVMGRRSNGA 77 (89)
Q Consensus 55 ~l~~~rD~~G~rPL~~g~~~~~~ 77 (89)
+++-++|..| .|+++|....|-
T Consensus 5 ~~~~vkd~~g-~~~~lGV~~~Gi 26 (92)
T cd00836 5 DLHPVKDKKG-TELLLGVTAEGI 26 (92)
T ss_pred eeEEEECCCC-CeEEEEEeCCCc
Confidence 5677888877 788888886443
No 64
>COG4911 Uncharacterized conserved protein [Function unknown]
Probab=39.79 E-value=53 Score=20.99 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=27.3
Q ss_pred CChHHHHHHHHHhhcC--CChHHHHHHHHhhccCceEEEEEe
Q 043065 13 SSDTVVVLHLIPISKA--RPFFLRILDVCEKLEGAYSMVFVT 52 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~~--~~~~~a~~~~~~~l~G~fa~~i~~ 52 (89)
.+.++-++.-+...|. .++...+.++.....|.|++..|-
T Consensus 50 e~q~k~~l~~i~e~G~iird~d~glVDFpa~~Ng~~~~lCWK 91 (123)
T COG4911 50 ESQTKKILDEIIEKGIIIRDIDIGLVDFPAIINGKPAFLCWK 91 (123)
T ss_pred HHHHHHHHHHHHHcCceeeccccccccchhhhCCceEEEEEe
Confidence 4455555555555542 355566678888889999999986
No 65
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.
Probab=36.80 E-value=1e+02 Score=19.58 Aligned_cols=27 Identities=11% Similarity=0.297 Sum_probs=19.9
Q ss_pred HHHHHHhhccCceEEEEEeCCEEEEEE
Q 043065 34 RILDVCEKLEGAYSMVFVTEDKLVAVR 60 (89)
Q Consensus 34 a~~~~~~~l~G~fa~~i~~~~~l~~~r 60 (89)
-+.+.+++.+|-+++++.|++.+-+++
T Consensus 6 ~L~~ll~~v~Gl~~I~itDrDGvpi~~ 32 (119)
T PF08923_consen 6 FLQKLLSRVDGLQAIVITDRDGVPIAK 32 (119)
T ss_dssp HHHHHGGGSTTEEEEEEEETTS-EEEE
T ss_pred HHHHHHhccCCeEEEEEECCCCcEEEE
Confidence 347888999999999999865544443
No 66
>PRK10545 nucleotide excision repair endonuclease; Provisional
Probab=35.69 E-value=33 Score=25.11 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=17.9
Q ss_pred CEEEEEEcCCCCccEEEEEec
Q 043065 54 DKLVAVRDPYGFMPLVMGRRS 74 (89)
Q Consensus 54 ~~l~~~rD~~G~rPL~~g~~~ 74 (89)
-.+|...|..|..|||+|...
T Consensus 35 PGVYlf~d~~g~~~LYVGKAk 55 (286)
T PRK10545 35 PGVYLFHGESDTMPLYIGKSV 55 (286)
T ss_pred CeEEEEEcCCCCEEEEEechH
Confidence 578999998888899999864
No 67
>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]
Probab=32.72 E-value=33 Score=25.27 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=29.9
Q ss_pred CChHHHHHHHHHhhc------CCChHHHHHHHHhhccCceEEEE
Q 043065 13 SSDTVVVLHLIPISK------ARPFFLRILDVCEKLEGAYSMVF 50 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~------~~~~~~a~~~~~~~l~G~fa~~i 50 (89)
..|+|+|+.++...+ +.+..++|++.+..=+|.|-=++
T Consensus 224 ~~daq~Il~yL~~~gG~mpf~DKSsPEdIk~~FgiSKg~FKrAi 267 (287)
T COG2996 224 DEDAQMILTYLESNGGFMPFNDKSSPEDIKATFGISKGQFKRAI 267 (287)
T ss_pred hhhHHHHHHHHHHcCCccccCCCCCHHHHHHHhCcCHHHHHHHH
Confidence 899999999999876 46778889888877777664443
No 68
>COG4315 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.95 E-value=43 Score=21.82 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=24.9
Q ss_pred HhhccCceEEEEEeCCEEEEEEcCCCCccEEEEEe
Q 043065 39 CEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRR 73 (89)
Q Consensus 39 ~~~l~G~fa~~i~~~~~l~~~rD~~G~rPL~~g~~ 73 (89)
-.+-+|.|+++.-.+++.=-+.|. +|||+=..
T Consensus 86 ~dka~Gdysii~RkDGt~QWa~dG---kPLY~w~k 117 (138)
T COG4315 86 ADKASGDYSIIARKDGTKQWAYDG---KPLYLWVK 117 (138)
T ss_pred ccccCCCeeeEEecCchhhhhcCC---ceeEEEee
Confidence 456799999999887666666675 89998765
No 69
>PF14191 YodL: YodL-like
Probab=30.42 E-value=73 Score=19.83 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=34.0
Q ss_pred CccccceeeccCChHHHHHHHHHhhcCCChHHHHHHHHhhccCce----EEEEEe--CCEEEEEEcCCCCccE
Q 043065 2 LKNVQPFVAGYSSDTVVVLHLIPISKARPFFLRILDVCEKLEGAY----SMVFVT--EDKLVAVRDPYGFMPL 68 (89)
Q Consensus 2 ~~n~qp~~~~~~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~f----a~~i~~--~~~l~~~rD~~G~rPL 68 (89)
.+||+-++...-.++|.+-.++.+.. ..-.+...|.. =+++++ .+.-+-.+|+.|.+++
T Consensus 35 ~~~Y~~VY~~~l~~~~~Le~iy~~FN--------~~~P~df~GhsLSvSDVV~l~~~g~~~~yYvDs~GF~ei 99 (103)
T PF14191_consen 35 PENYRLVYDGELDHTETLEDIYERFN--------VDHPEDFKGHSLSVSDVVELYDGGKSSFYYVDSFGFKEI 99 (103)
T ss_pred hHHceEEEEEecCCCCCHHHHHHHhC--------cCCCCCCCCCccChheEEEEEcCCceEEEEECCCCCeEC
Confidence 45777777776667777777776654 12234445533 133344 2444555788887764
No 70
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=29.85 E-value=35 Score=19.39 Aligned_cols=34 Identities=9% Similarity=0.021 Sum_probs=20.9
Q ss_pred ccccceeeccCChHHHHHHHHHhhcCCChHHHHHHHH
Q 043065 3 KNVQPFVAGYSSDTVVVLHLIPISKARPFFLRILDVC 39 (89)
Q Consensus 3 ~n~qp~~~~~~~DsEvi~~ll~~~~~~~~~~a~~~~~ 39 (89)
.|+..+.+. .||-|+-+.|.+... +..+++.+++
T Consensus 10 Q~iKEiv~~-hse~eIya~L~ecnM--Dpnea~qrLL 43 (60)
T PF06972_consen 10 QSIKEIVGC-HSEEEIYAMLKECNM--DPNEAVQRLL 43 (60)
T ss_pred HHHHHHhcC-CCHHHHHHHHHHhCC--CHHHHHHHHH
Confidence 344444444 789999988877765 3445555444
No 71
>smart00696 DM9 Repeats found in Drosophila proteins.
Probab=28.35 E-value=63 Score=18.53 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=15.0
Q ss_pred CCEEEEEEcCCCCccEEEEEe
Q 043065 53 EDKLVAVRDPYGFMPLVMGRR 73 (89)
Q Consensus 53 ~~~l~~~rD~~G~rPL~~g~~ 73 (89)
++-+-+.+|..| .|||+|+.
T Consensus 14 ~~AV~~G~~~~G-~~lYvgR~ 33 (71)
T smart00696 14 PNAVVGGTDSDG-EPLYVGRA 33 (71)
T ss_pred CCcEEcccCCCC-CEEEEEEE
Confidence 356777788777 78888875
No 72
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=25.52 E-value=85 Score=22.50 Aligned_cols=28 Identities=25% Similarity=0.545 Sum_probs=14.7
Q ss_pred EEcCCCCccEEEEEecCC-eEEEEecccc
Q 043065 59 VRDPYGFMPLVMGRRSNG-ALVFASETCA 86 (89)
Q Consensus 59 ~rD~~G~rPL~~g~~~~~-~~~~aSE~~a 86 (89)
+|.|+|.+.|..|.++++ --.+-.|+.+
T Consensus 124 grRPFGvs~Li~GfD~~g~p~lyqtePsG 152 (249)
T KOG0183|consen 124 GRRPFGVSTLIGGFDPDGTPRLYQTEPSG 152 (249)
T ss_pred CcccccceEEEEeeCCCCCeeeEeeCCCc
Confidence 455666666666666432 2333444444
No 73
>PF06386 GvpL_GvpF: Gas vesicle synthesis protein GvpL/GvpF; InterPro: IPR009430 Gas vesicles provide cells with buoyancy, enabling them to remain at the water surface. These organelles are generally synthesized by halophilic archaea and cyanobacteria, as well as some other prokaryotes. A cluster of 12-14 gvp genes (gvpMLKJIHGFEDACNO)is responsible for gas vesicle synthesis in Halobacterium sp. []. GvpF and GvpL are essential for gas vesicle formation and display sequence similarity to one another, both containing predicted coiled-coil domains that are often involved in self-oligomerisation; and are structural components of the vesicle [].; GO: 0031412 gas vesicle organization, 0031411 gas vesicle
Probab=25.12 E-value=1.1e+02 Score=21.41 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=27.7
Q ss_pred ccceeecc-CChHHHHHHHHHhhcCCChHHHHHHHHhhccC--ceEEEEE
Q 043065 5 VQPFVAGY-SSDTVVVLHLIPISKARPFFLRILDVCEKLEG--AYSMVFV 51 (89)
Q Consensus 5 ~qp~~~~~-~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G--~fa~~i~ 51 (89)
.=|+++++ -+|-|-+..+|..+. +.+.+.+.+|+| .|.+-++
T Consensus 78 vLP~rFGtv~~~~~~l~~~L~~~~-----~~~~~~L~~l~g~~E~~vkv~ 122 (249)
T PF06386_consen 78 VLPMRFGTVFSSEEELRELLAENY-----DEFRAALDRLEGKVEWGVKVY 122 (249)
T ss_pred eeeeeCccccCCHHHHHHHHHHhH-----HHHHHHHHHcCCceEEEEEEE
Confidence 45888877 334444556666654 567889999999 4566553
No 74
>PF05742 NRDE: NRDE protein; InterPro: IPR008551 This family is found in eukaryotes, prokaryotes and viruses and has no known function. P54797 from SWISSPROT has been found to be expressed during early embryogenesis in Mus sp [].
Probab=24.75 E-value=2.6e+02 Score=19.87 Aligned_cols=69 Identities=10% Similarity=0.152 Sum_probs=37.6
Q ss_pred CChHHHHHHHHHhhcC-CChHHHHHHHHhhccCceEEEEEeCC-----EEEEEEcCCCCccEEEEEecCCeEEEEe
Q 043065 13 SSDTVVVLHLIPISKA-RPFFLRILDVCEKLEGAYSMVFVTED-----KLVAVRDPYGFMPLVMGRRSNGALVFAS 82 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~~-~~~~~a~~~~~~~l~G~fa~~i~~~~-----~l~~~rD~~G~rPL~~g~~~~~~~~~aS 82 (89)
.|=.+++..+|..... .+..+.+..-..+. .+|.+++.|.+ .++...++....+..+-..+.+.+.+|+
T Consensus 83 ~SRG~Lv~~fL~~~~~~~~~~~~l~~~~~~y-~gFnLv~~d~~~~~~~~~~~~sn~~~~~~~~~~~l~~g~hglSN 157 (273)
T PF05742_consen 83 RSRGELVKDFLTSNASPEEYLEELAKEAHDY-NGFNLVVGDLSKTGGSELYYYSNRGDKDPIVIEELPPGVHGLSN 157 (273)
T ss_pred cCcchhhHhhhccCccHHHHHHHHHHhcCcc-CCEEEEEEEcccCCcceEEEEEeccCCCCceeEEccCCceEEcC
Confidence 4556677666654221 11222222222333 45999999944 7888888766445444333345566665
No 75
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=24.14 E-value=82 Score=20.10 Aligned_cols=21 Identities=19% Similarity=-0.023 Sum_probs=17.5
Q ss_pred ccccceeeccCChHHHHHHHH
Q 043065 3 KNVQPFVAGYSSDTVVVLHLI 23 (89)
Q Consensus 3 ~n~qp~~~~~~~DsEvi~~ll 23 (89)
-|-||..++--|.+|+.+...
T Consensus 11 LN~ePvV~rGlT~~El~~~a~ 31 (121)
T PF11990_consen 11 LNREPVVFRGLTADELGLAAG 31 (121)
T ss_pred hcCCCCeecCCCHHHHHHHHH
Confidence 489999999999999866544
No 76
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=24.05 E-value=62 Score=16.90 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=14.6
Q ss_pred CChHHHHHHHHhhccCce
Q 043065 29 RPFFLRILDVCEKLEGAY 46 (89)
Q Consensus 29 ~~~~~a~~~~~~~l~G~f 46 (89)
.++.+.++++.++|.|.|
T Consensus 21 PDLdel~r~l~~kl~~~f 38 (42)
T PF12221_consen 21 PDLDELFRKLQDKLGGLF 38 (42)
T ss_pred CCHHHHHHHHHHHHhccc
Confidence 478888899988888765
No 77
>PRK03467 hypothetical protein; Provisional
Probab=23.39 E-value=2.3e+02 Score=18.69 Aligned_cols=34 Identities=12% Similarity=0.048 Sum_probs=21.1
Q ss_pred ceEEEEEeCCEEEEEEcCCCCccEEEEEecCC-eEEEEeccc
Q 043065 45 AYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNG-ALVFASETC 85 (89)
Q Consensus 45 ~fa~~i~~~~~l~~~rD~~G~rPL~~g~~~~~-~~~~aSE~~ 85 (89)
-.+++..+++.++++ +.+|..++++ .++|.|+..
T Consensus 19 vltLa~~~~~~~w~A-------~cFY~fd~~~~~l~~~S~~~ 53 (144)
T PRK03467 19 VVTLCVGQEGELWCA-------NCFYVFDAQKVAFYLLTEEK 53 (144)
T ss_pred EEEEEEEcCCCcceE-------EEEEEEcCCCeEEEEEcCCC
Confidence 456666667777765 4577665433 567777654
No 78
>PF12447 DUF3683: Protein of unknown function (DUF3683); InterPro: IPR022153 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF02754 from PFAM, PF01565 from PFAM, PF02913 from PFAM.
Probab=23.04 E-value=56 Score=20.91 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=15.5
Q ss_pred ceeeccCChHHHHHHHHHhh
Q 043065 7 PFVAGYSSDTVVVLHLIPIS 26 (89)
Q Consensus 7 p~~~~~~~DsEvi~~ll~~~ 26 (89)
|.=..+-+|-|+|..++...
T Consensus 8 PYNYTS~sDReiV~rlLG~~ 27 (115)
T PF12447_consen 8 PYNYTSFSDREIVIRLLGEE 27 (115)
T ss_pred CCCCCCccHHHHHHHHcCHH
Confidence 44456789999999999764
No 79
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=21.12 E-value=1.1e+02 Score=22.16 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=33.4
Q ss_pred CCccccceeeccCChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEeC-CEEEEEEcCC
Q 043065 1 MLKNVQPFVAGYSSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTE-DKLVAVRDPY 63 (89)
Q Consensus 1 ~~~n~qp~~~~~~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~~-~~l~~~rD~~ 63 (89)
+|.||=|-......|-|..++.++... -..+.+.+....| +++..+ +.+++..|.+
T Consensus 5 ~l~~Y~eWTetlg~~RE~~iQ~lQa~l----~~~l~~~~~~~~g---~~~~~R~D~~iavtnGi 61 (246)
T PF05165_consen 5 QLDNYREWTETLGPDREWDIQTLQARL----YADLQQFFSSRGG---LVFPTRYDNMIAVTNGI 61 (246)
T ss_dssp EETTHHHHCCSSS---HHHHHHHHHHH----HHHHHHHHHTTT----EEE-TTSSEEEEE-TT-
T ss_pred EecCCccCcCCCCCchHHHHHHHHHHH----HHHHHHHHHhcCC---EEeeeeeeeEEEeecCC
Confidence 478899999999999999999998864 1222333333333 555554 7788887754
No 80
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=20.64 E-value=1.7e+02 Score=16.30 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=17.5
Q ss_pred ccCceEEEEEe-CCEEEEEEcCCCC--ccEEE
Q 043065 42 LEGAYSMVFVT-EDKLVAVRDPYGF--MPLVM 70 (89)
Q Consensus 42 l~G~fa~~i~~-~~~l~~~rD~~G~--rPL~~ 70 (89)
+.-.-++..-. .+++++..|. |+ |||++
T Consensus 30 i~~~vsi~~~~~~~ei~I~tD~-GR~~RPL~v 60 (63)
T PF04566_consen 30 ISKEVSIVYDIREKEIRINTDA-GRLCRPLFV 60 (63)
T ss_dssp S-TTSEEEEETTTTEEEEE-SS-CEEEEEEEE
T ss_pred CcceeEEEEeccCCEEEEEccC-CcccceeEE
Confidence 44455665433 5899999996 64 67765
Done!